Query 003404
Match_columns 823
No_of_seqs 304 out of 2553
Neff 7.9
Searched_HMMs 29240
Date Tue Mar 26 00:05:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4arc_A Leucine--tRNA ligase; l 100.0 4E-176 1E-180 1575.7 61.5 781 1-814 88-880 (880)
2 2v0c_A Aminoacyl-tRNA syntheta 100.0 9E-168 3E-172 1516.7 50.2 788 1-814 68-877 (878)
3 1ffy_A Isoleucyl-tRNA syntheta 100.0 1E-114 5E-119 1055.4 18.8 610 1-746 83-789 (917)
4 1ile_A Ilers, isoleucyl-tRNA s 100.0 1E-112 4E-117 1037.1 31.1 603 1-750 73-795 (821)
5 1gax_A Valrs, valyl-tRNA synth 100.0 9E-112 3E-116 1022.0 37.8 542 1-745 69-709 (862)
6 1wz2_A Leucyl-tRNA synthetase; 100.0 1E-101 5E-106 950.6 28.2 604 1-750 69-829 (967)
7 1wkb_A Leucyl-tRNA synthetase; 100.0 3.6E-95 1.2E-99 884.7 32.9 585 1-731 69-810 (810)
8 1rqg_A Methionyl-tRNA syntheta 100.0 2E-72 6.7E-77 672.1 25.5 418 1-744 38-530 (722)
9 3u1f_A Methionyl-tRNA syntheta 100.0 8.7E-72 3E-76 652.7 25.4 425 1-744 44-515 (542)
10 2x1l_A Methionyl-tRNA syntheta 100.0 3.9E-68 1.3E-72 618.7 24.1 406 1-733 47-492 (524)
11 2d5b_A Methionyl-tRNA syntheta 100.0 1.1E-66 3.7E-71 603.8 22.7 400 1-733 38-470 (500)
12 2csx_A Methionyl-tRNA syntheta 100.0 1.5E-66 5.1E-71 601.6 20.3 396 1-733 40-469 (497)
13 3kfl_A Methionyl-tRNA syntheta 100.0 1.4E-65 4.8E-70 599.4 20.2 411 1-733 61-516 (564)
14 4dlp_A Aminoacyl-tRNA syntheta 100.0 1.3E-64 4.3E-69 589.7 27.0 406 1-734 60-500 (536)
15 3h99_A Methionyl-tRNA syntheta 100.0 1.9E-64 6.5E-69 591.2 21.2 416 1-746 53-530 (560)
16 3o0a_A Leucyl-tRNA synthetase 100.0 2E-39 6.9E-44 330.0 18.6 197 157-361 1-219 (219)
17 2ajg_A Leucyl-tRNA synthetase; 100.0 9.1E-37 3.1E-41 307.0 18.6 185 159-356 10-195 (196)
18 3c8z_A Cysteinyl-tRNA syntheta 100.0 1.1E-35 3.7E-40 334.2 14.6 145 472-699 243-390 (414)
19 1wny_A Isoleucyl-tRNA syntheta 100.0 3.3E-34 1.1E-38 285.9 10.9 178 158-359 2-183 (186)
20 3sp1_A Cysteinyl-tRNA syntheta 100.0 8.5E-34 2.9E-38 319.2 12.2 92 1-95 76-177 (501)
21 3tqo_A Cysteinyl-tRNA syntheta 100.0 4.8E-32 1.7E-36 303.9 15.0 93 1-96 59-152 (462)
22 1wka_A Valyl-tRNA synthetase; 100.0 1.6E-31 5.5E-36 255.6 15.7 143 159-359 4-146 (147)
23 2wfd_A Leucyl-tRNA synthetase, 100.0 1.2E-29 4E-34 264.5 12.1 184 163-355 9-249 (252)
24 1li5_A Cysrs, cysteinyl-tRNA s 100.0 1.2E-28 4.1E-33 279.7 19.2 150 472-701 219-370 (461)
25 2wfg_A Cytosolic leucyl-tRNA s 100.0 1.1E-29 3.9E-34 265.4 8.2 174 177-359 32-252 (261)
26 3pz6_A Leurs, leucyl-tRNA synt 99.9 1.3E-27 4.3E-32 248.0 8.7 172 177-355 79-303 (311)
27 1iq0_A Arginyl-tRNA synthetase 99.6 3.1E-15 1E-19 175.1 13.5 119 578-701 392-543 (592)
28 1irx_A Lysyl-tRNA synthetase; 99.5 3E-15 1E-19 173.0 3.1 60 578-638 277-337 (523)
29 2zue_A Arginyl-tRNA synthetase 99.5 2E-13 6.7E-18 160.3 17.3 123 578-701 422-587 (629)
30 3fnr_A Arginyl-tRNA synthetase 99.4 8.4E-14 2.9E-18 157.1 8.6 123 578-701 283-414 (464)
31 1f7u_A Arginyl-tRNA synthetase 97.9 1.6E-05 5.5E-10 92.6 9.3 121 580-701 407-565 (607)
32 3aii_A Glutamyl-tRNA synthetas 96.5 0.00062 2.1E-08 77.4 1.1 53 577-629 326-394 (553)
33 2cyb_A Tyrosyl-tRNA synthetase 96.0 0.0031 1.1E-07 67.8 3.7 29 577-610 211-239 (323)
34 3tzl_A Tryptophanyl-tRNA synth 93.8 0.051 1.7E-06 58.1 5.1 24 472-496 138-161 (322)
35 2cfo_A Glutamyl-tRNA synthetas 93.6 0.029 9.9E-07 63.5 3.0 52 29-84 44-96 (492)
36 1ile_A Ilers, isoleucyl-tRNA s 93.6 0.016 5.4E-07 70.3 0.9 76 67-156 361-438 (821)
37 1qtq_A GLNRS, protein (glutami 93.2 0.012 4.1E-07 66.9 -1.0 54 576-629 263-332 (553)
38 2yxn_A Tyrosyl-tRNA synthetase 93.0 0.037 1.3E-06 59.2 2.5 30 577-608 232-261 (322)
39 2el7_A Tryptophanyl-tRNA synth 92.8 0.089 3.1E-06 56.6 5.2 24 472-496 140-163 (337)
40 1y42_X Tyrosyl-tRNA synthetase 92.8 0.075 2.6E-06 58.3 4.6 17 577-593 290-306 (392)
41 2g36_A Tryptophanyl-tRNA synth 92.6 0.1 3.4E-06 56.3 5.3 28 577-609 202-229 (340)
42 1gax_A Valrs, valyl-tRNA synth 92.4 0.075 2.6E-06 64.4 4.3 75 68-156 317-394 (862)
43 2jan_A Tyrosyl-tRNA synthetase 92.1 0.08 2.7E-06 58.7 3.7 17 577-593 228-245 (432)
44 2ts1_A Tyrosyl-tRNA synthetase 91.6 0.057 2E-06 59.7 1.8 17 577-593 227-243 (419)
45 1n3l_A Tyrosyl-tRNA synthetase 91.5 0.075 2.6E-06 58.0 2.6 27 577-608 219-246 (372)
46 1jil_A Tyrrs, tyrosyl-tRNA syn 91.5 0.065 2.2E-06 59.4 2.1 17 577-593 228-244 (420)
47 2pid_A Tyrosyl-tRNA synthetase 91.4 0.05 1.7E-06 59.0 1.1 30 577-608 251-280 (356)
48 2hz7_A Glutaminyl-tRNA synthet 91.2 0.046 1.6E-06 65.0 0.7 53 577-629 304-372 (851)
49 1yi8_B Tryptophanyl-tRNA synth 91.2 0.19 6.6E-06 54.3 5.5 25 472-497 161-185 (351)
50 1ffy_A Isoleucyl-tRNA syntheta 91.1 0.048 1.6E-06 66.6 0.6 52 106-157 394-446 (917)
51 1h3f_A Tyrosyl-tRNA synthetase 90.8 0.088 3E-06 58.5 2.4 27 578-609 229-256 (432)
52 2yy5_A Tryptophanyl-tRNA synth 90.7 0.24 8.2E-06 53.5 5.6 25 472-497 146-170 (348)
53 1i6k_A TRPRS, tryptophanyl-tRN 90.5 0.26 8.8E-06 52.8 5.6 24 472-496 136-159 (328)
54 1wkb_A Leucyl-tRNA synthetase; 90.4 0.029 9.8E-07 68.0 -2.2 93 63-156 391-500 (810)
55 2o5r_A Glutamyl-tRNA synthetas 90.3 0.11 3.9E-06 58.5 2.8 34 577-611 259-293 (481)
56 2zp1_A Tyrosyl-tRNA synthetase 90.1 0.17 5.8E-06 53.9 3.7 16 578-593 201-217 (314)
57 2dlc_X Tyrosyl-tRNA synthetase 88.7 0.15 5.1E-06 56.1 2.1 16 578-593 225-241 (394)
58 1f7u_A Arginyl-tRNA synthetase 88.2 0.46 1.6E-05 55.2 5.8 55 31-89 267-322 (607)
59 3vgj_A Tyrosyl-tRNA synthetase 87.6 0.24 8.3E-06 53.9 2.9 23 472-495 199-221 (373)
60 2ip1_A Tryptophanyl-tRNA synth 86.6 0.36 1.2E-05 53.6 3.5 15 579-593 294-309 (432)
61 1wz2_A Leucyl-tRNA synthetase; 85.4 0.14 4.6E-06 63.2 -0.7 51 106-156 446-500 (967)
62 3sz3_A Tryptophanyl-tRNA synth 85.4 0.57 1.9E-05 50.3 4.2 26 472-498 142-167 (341)
63 1j09_A Glutamyl-tRNA synthetas 85.1 0.22 7.6E-06 55.9 0.9 54 29-84 44-104 (468)
64 2cya_A Tyrosyl-tRNA synthetase 84.7 0.34 1.2E-05 52.6 2.1 16 578-593 236-252 (364)
65 3al0_C Glutamyl-tRNA(Gln) amid 84.2 0.37 1.3E-05 55.7 2.2 35 577-612 356-391 (592)
66 3afh_A Glutamyl-tRNA synthetas 84.2 0.43 1.5E-05 53.8 2.7 35 577-612 252-287 (488)
67 3i05_A Tryptophanyl-tRNA synth 84.2 0.28 9.6E-06 53.7 1.2 15 579-593 269-283 (395)
68 2ja2_A Glutamyl-tRNA synthetas 84.0 0.86 2.9E-05 51.4 5.1 53 28-84 48-109 (498)
69 2j5b_A Tyrosyl-tRNA synthetase 83.8 0.68 2.3E-05 49.9 4.0 21 473-494 186-206 (348)
70 3tze_A Tryptophanyl-tRNA synth 82.4 0.7 2.4E-05 50.7 3.4 22 473-495 243-264 (406)
71 3n9i_A Tryptophanyl-tRNA synth 82.2 1.2 4.2E-05 47.7 5.1 26 472-498 151-176 (346)
72 3hzr_A Tryptophanyl-tRNA synth 81.9 0.82 2.8E-05 49.8 3.7 15 579-593 268-283 (386)
73 3prh_A Tryptophanyl-tRNA synth 81.2 1.5 5E-05 47.8 5.4 26 472-498 170-195 (388)
74 3hv0_A Tryptophanyl-tRNA synth 81.1 0.52 1.8E-05 51.6 1.8 13 579-591 265-278 (393)
75 1r6t_A Tryptophanyl-tRNA synth 80.9 0.77 2.6E-05 51.6 3.1 15 579-593 348-363 (477)
76 1r6u_A Tryptophanyl-tRNA synth 80.9 0.77 2.6E-05 50.9 3.1 15 579-593 301-316 (437)
77 2cyc_A Tyrosyl-tRNA synthetase 80.3 0.86 2.9E-05 49.6 3.2 15 579-593 250-265 (375)
78 3jxe_A Tryptophanyl-tRNA synth 79.6 0.95 3.2E-05 49.5 3.2 13 579-591 252-265 (392)
79 3p0j_A Tyrosyl-tRNA synthetase 72.5 1.4 4.9E-05 51.7 2.3 22 472-494 182-203 (690)
80 1nzj_A Hypothetical protein YA 67.5 3.4 0.00011 43.4 3.7 52 29-84 48-100 (298)
81 3foc_A Tryptophanyl-tRNA synth 63.7 3.8 0.00013 45.4 3.4 12 579-590 332-344 (451)
82 4g6z_A Glutamate-tRNA ligase; 51.7 8.2 0.00028 43.3 3.4 54 28-84 67-120 (490)
83 3a04_A Tryptophanyl-tRNA synth 47.7 7.9 0.00027 41.9 2.5 14 577-590 253-267 (372)
84 1nzj_A Hypothetical protein YA 43.6 18 0.0006 37.8 4.3 12 577-588 225-236 (298)
85 4g6z_A Glutamate-tRNA ligase; 40.0 32 0.0011 38.5 5.8 34 578-612 262-296 (490)
86 3fnr_A Arginyl-tRNA synthetase 39.1 30 0.001 38.5 5.5 46 36-85 146-191 (464)
87 1qtq_A GLNRS, protein (glutami 36.2 37 0.0013 38.5 5.6 54 28-84 68-121 (553)
88 1pft_A TFIIB, PFTFIIBN; N-term 30.2 28 0.00095 25.6 2.3 33 80-112 15-47 (50)
89 2hz7_A Glutaminyl-tRNA synthet 27.6 59 0.002 38.8 5.6 54 28-84 108-161 (851)
90 8tfv_A Protein (thanatin); bac 27.2 19 0.00066 20.7 0.7 10 374-383 4-13 (21)
91 2cfo_A Glutamyl-tRNA synthetas 25.9 67 0.0023 35.9 5.5 35 577-612 244-279 (492)
92 2ja2_A Glutamyl-tRNA synthetas 25.5 1E+02 0.0036 34.4 6.9 35 577-612 254-289 (498)
93 3aii_A Glutamyl-tRNA synthetas 24.8 64 0.0022 36.6 5.0 53 28-84 138-190 (553)
94 3afh_A Glutamyl-tRNA synthetas 24.4 83 0.0029 35.1 5.9 54 28-85 67-129 (488)
95 4ayb_P DNA-directed RNA polyme 23.2 53 0.0018 23.9 2.5 30 90-119 4-36 (48)
96 4gri_A Glutamate--tRNA ligase; 22.7 1.2E+02 0.004 34.2 6.7 57 28-84 66-127 (512)
97 1j09_A Glutamyl-tRNA synthetas 22.3 84 0.0029 34.9 5.4 35 577-612 240-275 (468)
No 1
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=3.9e-176 Score=1575.67 Aligned_cols=781 Identities=41% Similarity=0.735 Sum_probs=659.5
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+||+|+|+|||||||+|||++|++.|++|++|+.++++.|++||++||+++||+|+++||||+|++++||+|.+|+++|
T Consensus 88 m~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekG 167 (880)
T 4arc_A 88 MLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKG 167 (880)
T ss_dssp HTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTT
T ss_pred HcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCC-CChHHHHHHHHhhhccc
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL-DWPESVKEMQRNWIGRS 159 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l-~wp~~v~~~q~~wig~s 159 (823)
|||++.++|||||.|+|+|||+||++|+||+||++|++++++|||||||+|+++|+++|+.+ +||++|+.||+||||+|
T Consensus 168 liY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wig~s 247 (880)
T 4arc_A 168 LVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRS 247 (880)
T ss_dssp CEEEEEECC------------------------------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHHCEE
T ss_pred CEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999 59999999999999999
Q ss_pred CCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhhhcc
Q 003404 160 EGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEK 239 (823)
Q Consensus 160 ~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (823)
+|++|+|++.+. +.+|.|||||||||||++||||||+|+|+..++..+ ..+++|+..+...+..++......+
T Consensus 248 ~g~~v~f~~~~~-----~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (880)
T 4arc_A 248 EGVEITFNVNDY-----DNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENN--PELAAFIDECRNTKVAEAEMATMEK 320 (880)
T ss_dssp EEEEEEEEETTC-----SSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGC--HHHHHHHTC----------------
T ss_pred cceEEEEEecCC-----CceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcCh--HHHHHHHHHHhccCchhhhhcccee
Confidence 999999999532 468999999999999999999999999998876533 4567788777666665555445578
Q ss_pred cceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCC-Cccccccccccce
Q 003404 240 TGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDES-SSQSEKAYTGEGL 318 (823)
Q Consensus 240 ~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~-~~~~~~~~~~~g~ 318 (823)
.|.++|.+++||++|+++|||+++||+++|||||||+|||||++||+||++||||+++||++.++. ......+|+++|+
T Consensus 321 ~g~~~g~~~~~P~~~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~ 400 (880)
T 4arc_A 321 KGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGV 400 (880)
T ss_dssp CEEEEEEEEECTTTCCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCC
T ss_pred eccccCcEEecCCCCCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCce
Confidence 899999999999999999999999999999999999999999999999999999999999875332 1123567999999
Q ss_pred EecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCc
Q 003404 319 IVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLT 398 (823)
Q Consensus 319 ~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~ 398 (823)
++++.. ++||+..+|+++|+++|++.|.+.+.++|+|||||||||||||+|||+|||++|| .+++++++||+.
T Consensus 401 ~~ns~~------~~Gl~~~eA~~~ii~~L~~~g~~~~~v~yrlrDW~iSRQRyWG~PIPi~~c~~cg-~v~v~~~~Lpv~ 473 (880)
T 4arc_A 401 LFNSGE------FNGLDHEAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGT-VMPTPDDQLPVI 473 (880)
T ss_dssp BCSSGG------GTTCCHHHHHHHHHHHHHHTTSEEEEEEESCCCEECEESCSSSCBCCEEEETTSC-EEECCGGGCSCC
T ss_pred eecCcc------cCCCCHHHHHHHHHHHHHHcCCcceeEEEEcccceeeeeeccCCcceEEEECCCC-eEeCChHHCccc
Confidence 988765 9999999999999999999999999999999999999999999999999997765 788999999999
Q ss_pred CCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhhhcCCCCChhhhhhhhccccCCceeee
Q 003404 399 LPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYV 478 (823)
Q Consensus 399 lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v 478 (823)
||+. +.+.|.| +||..+++|.++.|| |++++||+|||||||||||||+||++|+|.+.+++++..++|+|+|+|+
T Consensus 474 lp~~--~~~~~~g-~pl~~~~~w~~~~cp--g~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi 548 (880)
T 4arc_A 474 LPED--VVMDGIT-SPIKADPEWAKTTVN--GMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANYWLPVDIYI 548 (880)
T ss_dssp CCSS--CCCCSSS-CHHHHSTTTTEEESS--SSEEEECCCEECTTTGGGTHHHHTTSTTCCSSSCCHHHHHHHCSEEEEE
T ss_pred cchh--cccCCCC-CchHhCccceeeccC--CCcceeCCCcCCCcccCcHHHHhhcCCCccccccChHHHhccCCceEee
Confidence 9984 3445555 799999999999999 8899999999999999999999999999988899988889999999999
Q ss_pred cChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCc--cccCCCCCccccccccccchhh
Q 003404 479 GGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGS--YISADSTDTLGEYEQESIPEEK 556 (823)
Q Consensus 479 ~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~--~~~~~~~~~~~~~~~~~~~~~~ 556 (823)
||+||+++||||+||||++|.++|++..++||++|++||||+++++| .+|++|+ |++|++|+..+......+.
T Consensus 549 gG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~--~~d~~G~~~~~~~~~v~~~~~~~~~~~~--- 623 (880)
T 4arc_A 549 GGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFY--YVGENGERNWVSPVDAIVERDEKGRIVK--- 623 (880)
T ss_dssp CCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEE--EECTTSCEEEECSTTCEEEECTTCCEEE---
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHeEEeceEeeccee--ccccCCcccccCHHHhcccccccccccc---
Confidence 99999999999999999999999999999999999999999988632 2688897 9999998764432211110
Q ss_pred hcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHH
Q 003404 557 VMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWR 636 (823)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~ 636 (823)
.+..+|...+...-+|||||+||+|+|.++|++||||++|||+|+.++++++++|+++.+++++||++|+|+
T Consensus 624 --------~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn 695 (880)
T 4arc_A 624 --------AKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWK 695 (880)
T ss_dssp --------EECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHH
T ss_pred --------ccccCCccccccccccccCcCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 011233333333456999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhccc-------cchHHHH
Q 003404 637 LIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIE-GTRFNTGISAMMEFINAAYKWE-------KHPRKII 708 (823)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e-~~~f~~ai~~l~~~~~~~~~~~-------~~~~~~l 708 (823)
++...... ..............|+++++++++++++|+++|+ +|+|++|++++|+|++.++++. ...++++
T Consensus 696 ~~~~~~~~-~~~~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~k~~~~~~~~~~~l~~~l 774 (880)
T 4arc_A 696 LVYEHTAK-GDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAPTDGEQDRALMQEAL 774 (880)
T ss_dssp HHHHHHHT-CCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHH
T ss_pred HHHHHHhc-ccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Confidence 87432100 0000000111245688999999999999999998 7999999999999999999863 2356899
Q ss_pred HHHHHHhCccchhhHHHHHHHcCCCCCccccCCCCCCcccccccccEEeEEEcceEEEEEEecCCCCHHHHHHHHhcChh
Q 003404 709 EPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEK 788 (823)
Q Consensus 709 ~~l~~lLaPi~P~~aEelw~~L~~~~sv~~~~WP~~~e~~l~~~~~~~~vqvngk~r~~i~v~~~~s~e~~~~~~~~~~~ 788 (823)
+.+++||+|||||+|||||+.|+..+||+.++||+++++++.++++++.||||||+|++++++.+++++++++++++++.
T Consensus 775 ~~ll~LLaPf~PhiaEElW~~Lg~~~sv~~~~wP~~d~~~l~~~~~~~~vqvngk~r~~~~v~~~~~~~~~~~~~~~~~~ 854 (880)
T 4arc_A 775 LAVVRMLNPFTPHICFTLWQELKGEGDIDNAPWPVADEKAMVEDSTLVVVQVNGKVRAKITVPVDATEEQVRERAGQEHL 854 (880)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHTTCSSCGGGSCCCCCCHHHHCCSEEEEEEEETTEEEEEEEEETTCCHHHHHHHHHHCHH
T ss_pred HHHHHHHhhccHHHHHHHHHHcCCCCeEEeCCCCCCCHHHhccCceEEEEEEecceEEEEEcCCCCCHHHHHHHHhcCHH
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCeEEEEEeCCCEEEEEec
Q 003404 789 LSKFLDGKSIKKRIYVPGRILNVILD 814 (823)
Q Consensus 789 ~~~~l~gk~i~kvi~v~~kivN~v~~ 814 (823)
++++|+||+|+|+|+|||||||||++
T Consensus 855 ~~~~~~~~~~~k~i~v~~k~vn~v~~ 880 (880)
T 4arc_A 855 VAKYLDGVTVRKVIYVPGKLLNLVVG 880 (880)
T ss_dssp HHTTTTTCCCCEEEEETTTEEEEECC
T ss_pred HHHHhCCCCceEEEEECCCEEEEEeC
Confidence 99999999999999999999999985
No 2
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=9.3e-168 Score=1516.73 Aligned_cols=788 Identities=44% Similarity=0.770 Sum_probs=632.3
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+||+|+|++||||||+|||++|++.|++|++|+.++++.|++||++||+++||+|+|+|++|+|++++||+|.+|+++|
T Consensus 68 m~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kG 147 (878)
T 2v0c_A 68 MQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKG 147 (878)
T ss_dssp HHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTT
T ss_pred hcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccccCcccc-CCCCeEEeccchhhhhHhhhHHHhhccCCCCCChHHHHHHHHhhhccc
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVDGVSER-GGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRS 159 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~g~~~~-~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~wp~~v~~~q~~wig~s 159 (823)
+||++.++|+|||.|+|+|||+||++|+|++ ||+++++++++||||+|++|+++|+++|+.++||++++.||+||||+|
T Consensus 148 liY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~s 227 (878)
T 2v0c_A 148 LAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRS 227 (878)
T ss_dssp CEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCEE
T ss_pred CEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhhhcc
Q 003404 160 EGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEK 239 (823)
Q Consensus 160 ~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (823)
+|++|+|++.+ .+.+|+||||||||||||+|+||||+|+|+..++..+....+++|+..+..++++++......+
T Consensus 228 ~g~~v~f~~~~-----~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (878)
T 2v0c_A 228 EGAEILFPVEG-----KEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREK 302 (878)
T ss_dssp EEEEEEEEBTT-----SSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCC
T ss_pred cCceEEEEecC-----CCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHHHHhhhhhhhhhhcccee
Confidence 99999999953 2478999999999999999999999999998887666677888999988888877774434567
Q ss_pred cceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCC-Cccccccccccce
Q 003404 240 TGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDES-SSQSEKAYTGEGL 318 (823)
Q Consensus 240 ~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~-~~~~~~~~~~~g~ 318 (823)
.|.|+|++++||++++++|||.++||++++||||||+|||||++||+||++||||++++|+++++. ..+..+.|+++|+
T Consensus 303 ~G~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~ 382 (878)
T 2v0c_A 303 TGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGI 382 (878)
T ss_dssp CCEEEEEEEECTTTCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCE
T ss_pred eeEecCcEEECCCCCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccccccccCCee
Confidence 788999999999999999999999999999999999999999999999999999999999875311 1112457888999
Q ss_pred EecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCc
Q 003404 319 IVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLT 398 (823)
Q Consensus 319 ~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~ 398 (823)
++++.. ++||...+|++.|+++|++.|.++..++|+|||||||||||||+|||+|||++| +.+++++++||+.
T Consensus 383 ~~ns~~------~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~WG~PIPi~~~~~~-~~v~v~~~~lpv~ 455 (878)
T 2v0c_A 383 MVNSGP------FDGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEAC-GVVPVPEEELPVL 455 (878)
T ss_dssp ECSSGG------GTTCBHHHHHHHHHHHHHHHTSEEEEEEESCCCEECEESCSSSEECCEEEETTT-EEEECCGGGCCCC
T ss_pred EecCCC------CCCcCHHHHHHHHHHHHHHCCCCCCceEEecccchhhcccccCCcccEEEECCC-CeEecCHHHcccc
Confidence 988865 999999999999999999999999999999999999999999999999999775 5788999999999
Q ss_pred CCcccccC-CCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhhhcCCCCChhhhhhhhccccCCceee
Q 003404 399 LPELDDFT-PTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVY 477 (823)
Q Consensus 399 lp~~~~~~-~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~~~p~n~~~~~~~~~~~~w~p~D~~ 477 (823)
||++.++. +.|.|.+|+..+++|+++.||+||++++||+|||||||||||||++|++|++.+.+++++..++|+|+|+|
T Consensus 456 lp~~~~~~~~~~~g~~pl~~~~~~~~~~cp~cg~~~~retDtmDtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~P~D~y 535 (878)
T 2v0c_A 456 LPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQY 535 (878)
T ss_dssp CCCCCCHHHHSCSSSCGGGGCHHHHEEECTTTCSEEEECCCEECHHHHHTSHHHHTTSTTCSSSSCCHHHHHHHCSBSEE
T ss_pred ccchhhhhccccCCCChhhhhHhhcCCcCCCCCCcceeccccccccccccchhhhccCccccccccCHHHHccCCCCeEE
Confidence 99888765 66777789999999999999999999999999999999999999999999998888888878999999999
Q ss_pred ecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCc----cccCCCCCccccccccccc
Q 003404 478 VGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGS----YISADSTDTLGEYEQESIP 553 (823)
Q Consensus 478 v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~----~~~~~~~~~~~~~~~~~~~ 553 (823)
++|+||+++||+|+||||++|.++|++..++||++|++||||++++ |++.+|. |++.+.. .....+..|
T Consensus 536 i~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 608 (878)
T 2v0c_A 536 IGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWT----DFGPVEVEGSVVRLPEPT---RIRLEIPES 608 (878)
T ss_dssp ECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEE----EEEEEEEETTEEECCHHH---HHHHTCSCS
T ss_pred EechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhheecceEeccc----eeccccccccceeccccc---cccccccCc
Confidence 9999999999999999999999999999999999999999999974 4554332 2220000 000000011
Q ss_pred hhhhccc-CCceeeccCcchhccccc-------cccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchH
Q 003404 554 EEKVMKS-GDFFVMKDNPNIRLIARA-------HKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIE 625 (823)
Q Consensus 554 ~~~~~~~-~~~~~~~~~~~~~~~~~G-------~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~ 625 (823)
.+.+... +.+.++.. ..+| +|||||+||+|+|.++|++||||++|||+|+.+++++|++|+++.++
T Consensus 609 ~~~~~~~~~~~~~~~~------~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~ 682 (878)
T 2v0c_A 609 ALSLEDVRKMGAELRP------HEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQ 682 (878)
T ss_dssp EEEHHHHHHTTCEEEE------CTTSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHH
T ss_pred hhhhhccccccceeec------cCCCCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHH
Confidence 1111000 01111100 0147 99999999999999999999999999999988999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCC-CCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccc---
Q 003404 626 GVHRFLGRMWRLIVGSSLP-DGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE--- 701 (823)
Q Consensus 626 ~~~~~l~r~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~--- 701 (823)
++.||++|+|+++...... ...............|+++++++++++++++++|++|+|++|++++|+|++.+++|.
T Consensus 683 ~~~~~l~Rl~n~~~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~~l~k~~~~~ 762 (878)
T 2v0c_A 683 GAWRFLNRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDR 762 (878)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhhcccc
Confidence 9999999999987431100 000000000112456889999999999999999999999999999999999999873
Q ss_pred ---cchHHHHHHHHHHhCccchhhHHHHHHHcCCCCCccccCCCCCCcccccccccEEeEEEcceEEEEEEecCCCCHHH
Q 003404 702 ---KHPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEE 778 (823)
Q Consensus 702 ---~~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~~sv~~~~WP~~~e~~l~~~~~~~~vqvngk~r~~i~v~~~~s~e~ 778 (823)
....++++.+++||+|||||+|||||+.|+ .+||+.++||+++++++.++.+++.+||||++|++++++.++++++
T Consensus 763 ~~~~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg-~~sv~~~~wP~~d~~~l~~~~~~~~vqvngkvR~~i~v~~~~~~~~ 841 (878)
T 2v0c_A 763 PVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFW-PDSLFEAGWPELDEKALEKDVVEVAVQVNGAVAGTIHIPKDAPLEV 841 (878)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSHHHHHHHHHHHC-SSCGGGSCCCCCCGGGGC----------------------------
T ss_pred hhHHHHHHHHHHHHHHHcccchHHHHHHHHHcC-CCceeecCCCCCCHHHHHHHHHHHHHhhHHHHHHHcccCcCCCHHH
Confidence 256799999999999999999999999999 7899999999999998888899999999999999999999999999
Q ss_pred HHHHHhcChhHHhhhCCCCeEEEEEeCCCEEEEEec
Q 003404 779 AFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVILD 814 (823)
Q Consensus 779 ~~~~~~~~~~~~~~l~gk~i~kvi~v~~kivN~v~~ 814 (823)
+++++++++.++++|+||+|+|+|+|||||||||++
T Consensus 842 ~~~~~~~~~~~~~~~~~~~~~k~i~v~~~~vn~v~~ 877 (878)
T 2v0c_A 842 ARAEALKVRNVRAHLEGKEVVKEIYVPGKILNLVVR 877 (878)
T ss_dssp ------------------------------------
T ss_pred HHHHHhcCHHHHHHhCCCCcEEEEEECCCEEEEEeC
Confidence 999999999999999999999999999999999995
No 3
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=1.4e-114 Score=1055.41 Aligned_cols=610 Identities=23% Similarity=0.334 Sum_probs=458.9
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHH
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKW 68 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p------------~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~ 68 (823)
|+||+|+|+|||||||||||++|++.|++| ++|+.++++.|++||++||+++||+|+|+||||+|+++
T Consensus 83 m~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~ 162 (917)
T 1ffy_A 83 MQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAA 162 (917)
T ss_dssp TTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHH
T ss_pred hCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHH
Confidence 899999999999999999999999999987 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCChHHH
Q 003404 69 TQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESV 148 (823)
Q Consensus 69 ~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~wp~~v 148 (823)
+||+|.+|+++|||||+.++|||||.|+|+|||+||+++. +
T Consensus 163 v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d-~-------------------------------------- 203 (917)
T 1ffy_A 163 QIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHD-K-------------------------------------- 203 (917)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEE-E--------------------------------------
T ss_pred HHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhccc-c--------------------------------------
Confidence 9999999999999999999999999999999999998531 1
Q ss_pred HHHHHhhhcccCCeEEEEEeecCCCC-CcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhcc
Q 003404 149 KEMQRNWIGRSEGAEMDFRVLDSDGQ-ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRK 227 (823)
Q Consensus 149 ~~~q~~wig~s~~~~~~f~~~~~~~~-~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (823)
+|++++|+|++.+..|. ..+.+++||||||||||||+||||||+++|+.+.+..+.....++++......
T Consensus 204 ---------~~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~ 274 (917)
T 1ffy_A 204 ---------RSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEA 274 (917)
T ss_dssp ---------EEEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTT
T ss_pred ---------cCceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHh
Confidence 45667888887542110 02578999999999999999999999999987655432222224444444433
Q ss_pred Chhhhh---hhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCC
Q 003404 228 SDLERT---ELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDE 304 (823)
Q Consensus 228 ~~~~~~---~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~ 304 (823)
..+++. .+...+|..|.|+++.||++++.+||+.++||++++|||+||+|||||++||+++++||||++++|+++ |
T Consensus 275 ~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~-G 353 (917)
T 1ffy_A 275 LDWDKASIKLEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDK-G 353 (917)
T ss_dssp TTCCSSCCCCCCCCCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSS-S
T ss_pred cCcccceeeeeeeeecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCC-c
Confidence 333321 233456667999999999999999999999999999999999999999999999999999999999876 6
Q ss_pred CCccccccccccc----------------eEec------c-------c-------CcccccccCCCCHHHHHHHHHHHHH
Q 003404 305 SSSQSEKAYTGEG----------------LIVN------S-------S-------NLISGLDINGLSCQEATSKVIEWAE 348 (823)
Q Consensus 305 ~~~~~~~~~~~~g----------------~~~~------~-------~-------~~~~~~~~~g~~~~~~~~~v~~~l~ 348 (823)
++++..+.|.|.. .++. + . ..|||++++.+ ++.+++++.
T Consensus 354 ~~~~~~~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~l-----r~~~l~~i~ 428 (917)
T 1ffy_A 354 VFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKV-----RQDILDAIE 428 (917)
T ss_dssp CCCTTCSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHH-----HHHHHHHHH
T ss_pred eeCCcccccCCcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHH-----HHHHHHHHh
Confidence 7766666676642 1111 0 0 01466655432 222222222
Q ss_pred H------cCCCcee-EeeecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCcCCcccccCCCCCCCCCCcCCccc
Q 003404 349 K------TGNGKKK-VNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSW 421 (823)
Q Consensus 349 ~------~~~~~~~-~~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~w 421 (823)
+ ++..+.. ...+++||||||||+||+|||+|||++ |.+ +++++ ++..++++ +...|...+.-....+|
T Consensus 429 ~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~~~~~~-g~~-~~~~~-~~~~i~~~--~~~~g~~~W~~~~~~~~ 503 (917)
T 1ffy_A 429 NTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAEN-GEI-IMTKE-TVNHVADL--FAEHGSNIWFEREAKDL 503 (917)
T ss_dssp TSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEECTT-SCE-ECCHH-HHHHHHHH--HHHHCTHHHHHSCHHHH
T ss_pred cCcccCHHHHHHHHHHHhcCccceeeccCCcCcccceeeCCC-CCE-ecCHH-HHHHHHHH--hhhcCCcccccCCHHHh
Confidence 1 1000000 001468999999999999999999976 543 34443 32222221 11112100000011233
Q ss_pred e--eecccCCCC-CccccCCCccccccc--hhhhhhhcCCCCChhhhhhhhccccCCceeeecChhhHHHHHHHHHHHHH
Q 003404 422 V--QTTEHSSGK-PARRETSTMPQWAGS--CWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHK 496 (823)
Q Consensus 422 ~--~~~~~~~g~-~~~re~dt~d~WfdS--sw~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v~G~D~~~~Hlly~rfw~~ 496 (823)
. ...||+||. .++||+||||||||| +|++.. ..+ + +..+|+|+|++|+||+ |+|++
T Consensus 504 ~~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l-~~~---------~--~~~~P~Dl~~~G~D~~-------r~wf~ 564 (917)
T 1ffy_A 504 LPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVL-ETR---------P--ELSFPADMYLEGSDQY-------RGWFN 564 (917)
T ss_dssp SSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTT-TTS---------T--TCCSSBSEEEEEGGGG-------TTHHH
T ss_pred cccccccccCCcccccccCCCcCeecCCCCCHHHHc-CCc---------h--hcCCCceEEEEEeccc-------ccHHH
Confidence 3 247899995 799999999999998 455441 111 0 1237999999999996 77744
Q ss_pred -HHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcccCCceeeccCcchhcc
Q 003404 497 -VLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLI 575 (823)
Q Consensus 497 -~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (823)
++.....+.+.+||+++++||||++.
T Consensus 565 ~~l~~s~~~~g~~Pfk~v~~hG~V~d~----------------------------------------------------- 591 (917)
T 1ffy_A 565 SSITTSVATRGVSPYKFLLSHGFVMDG----------------------------------------------------- 591 (917)
T ss_dssp HHHHHHHHHHSSCSBSEEEEECCEECT-----------------------------------------------------
T ss_pred HHHHHHHHhhCCCcccceeEeeeEEcC-----------------------------------------------------
Confidence 43443334567899999999999853
Q ss_pred ccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHH---HHHHHHHHHcCCCCCCCCCC--
Q 003404 576 ARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRF---LGRMWRLIVGSSLPDGTFKG-- 650 (823)
Q Consensus 576 ~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~---l~r~~~~~~~~~~~~~~~~~-- 650 (823)
+|+|||||+||+|+|.+++++||+|++|||+++ +++++|++|+++.+.++.++ |.|++++++++.. .+.+
T Consensus 592 -~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls-~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~---~~~~~~ 666 (917)
T 1ffy_A 592 -EGKKMSKSLGNVIVPDQVVKQKGADIARLWVSS-TDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNIN---DFNPDT 666 (917)
T ss_dssp -TSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHT-SCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTST---TCCHHH
T ss_pred -CCcCcccccCCcCChHHHHHhCCHHHHHHHHhc-cCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhh---ccCccc
Confidence 389999999999999999999999999999997 88999999999988876554 5555566665531 1211
Q ss_pred CccC--CCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHhccc----------------------cchH
Q 003404 651 GTVV--NDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFIN-AAYKWE----------------------KHPR 705 (823)
Q Consensus 651 ~~~~--~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~-~~~~~~----------------------~~~~ 705 (823)
+.++ .....|++++.++++++++++++|++|+|++|++.+|+|++ .+++|+ .++.
T Consensus 667 ~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~ 746 (917)
T 1ffy_A 667 DSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLY 746 (917)
T ss_dssp HCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHH
Confidence 0111 12346888999999999999999999999999999999998 444431 1234
Q ss_pred HHHHHHHHHhCccchhhHHHHHHHcCC--CCCccccCCCCCCc
Q 003404 706 KIIEPFILLLAPYAPHMSEELWFRLGH--SNSLAYESFPKANP 746 (823)
Q Consensus 706 ~~l~~l~~lLaPi~P~~aEelw~~L~~--~~sv~~~~WP~~~e 746 (823)
.+++.+++||+|||||+|||||+.|+. .+||+.+.||++++
T Consensus 747 ~~l~~l~~lLaP~~P~~aEeiw~~l~~~~~~sv~~~~wP~~~~ 789 (917)
T 1ffy_A 747 QILVDMTKLLAPILVHTAEEVWSHTPHVKEESVHLADMPKVVE 789 (917)
T ss_dssp HHHHHHHHHHTTTSHHHHHHHHTTSTTCSSSSGGGSCCCCCCC
T ss_pred HHHHHHHHHhcccccHHHHHHHHHcccCCCCCeEecCCCCCCc
Confidence 789999999999999999999999985 57999999999876
No 4
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=1.1e-112 Score=1037.14 Aligned_cols=603 Identities=24% Similarity=0.375 Sum_probs=470.7
Q ss_pred CCCCcccccccCCccchHHHHHHHHh-CCCC----------------hHHHHHHHHHHHHHHHHhcCcccCCCeeecCCh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIET-GTHP----------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEP 63 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~-g~~p----------------~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p 63 (823)
|+||+|+|++||||||||||++|++. |++| ++++.++++.|++||++||+++||+|+|+||||
T Consensus 73 m~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~ 152 (821)
T 1ile_A 73 MRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEP 152 (821)
T ss_dssp HTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSH
T ss_pred hcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCH
Confidence 79999999999999999999999985 8875 468889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC
Q 003404 64 AYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD 143 (823)
Q Consensus 64 ~y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~ 143 (823)
+|++++||+|.+|+++||||++.++|+|||.|+|+|||+||++|+++++
T Consensus 153 ~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~------------------------------- 201 (821)
T 1ile_A 153 TYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQ------------------------------- 201 (821)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEE-------------------------------
T ss_pred HHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCcccHhHhhcCccccc-------------------------------
Confidence 9999999999999999999999999999999999999999976766653
Q ss_pred ChHHHHHHHHhhhcccCCeEEEEEeecCCC-CCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccc----hHHHH
Q 003404 144 WPESVKEMQRNWIGRSEGAEMDFRVLDSDG-QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ----SQNIE 218 (823)
Q Consensus 144 wp~~v~~~q~~wig~s~~~~~~f~~~~~~~-~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~----~~~~~ 218 (823)
+++++|+|++.+... ...+.+|+||||||||||||+||||||+++|+......+. ...++
T Consensus 202 ---------------~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~ 266 (821)
T 1ile_A 202 ---------------DPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGR 266 (821)
T ss_dssp ---------------EEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHH
T ss_pred ---------------CceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHH
Confidence 345689999853200 0125799999999999999999999999999876542221 22333
Q ss_pred HHHHHHhccChhhhhhhhhcccceecceEEecCCC---CCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCce
Q 003404 219 EYKNLASRKSDLERTELQKEKTGVFSGCYARNPAS---GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISI 295 (823)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~---~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~ 295 (823)
.++. .. ...+...+|..|.|+++.||+. ++.+||+.++||++++|||+||+|||||++||++|++||||+
T Consensus 267 ~~~~-----~~--~~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~ 339 (821)
T 1ile_A 267 KLLG-----EG--TQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPL 339 (821)
T ss_dssp HHTC-----TT--SCEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCC
T ss_pred HHHh-----hC--cEEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCc
Confidence 3332 11 1223445667899999999996 899999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCcee-------------------
Q 003404 296 HSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK------------------- 356 (823)
Q Consensus 296 ~~vv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~------------------- 356 (823)
+++|++. |++++. + +.|+.+.+|++.|++.|.+.|.+...
T Consensus 340 ~~~id~~-G~~~~~-~-------------------~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~ 398 (821)
T 1ile_A 340 LKTVDEE-GKLLVE-P-------------------FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMY 398 (821)
T ss_dssp CCCBCTT-SBBCSG-G-------------------GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEE
T ss_pred ceeECCC-CcCccc-C-------------------cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEE
Confidence 9999876 433332 2 45566666666666666665543221
Q ss_pred -----------------------Ee---------------eecCceeeeeccccCCcccEEEeCCCCceeeC-CCCccCC
Q 003404 357 -----------------------VN---------------YKLRDWLFARQRYWGEPIPVVFLDGTGETVPL-HEAELPL 397 (823)
Q Consensus 357 -----------------------~~---------------~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v-~~~~lpv 397 (823)
++ .+|+||||||||+||+|||+|+|++||....+ +.+++ +
T Consensus 399 ~~~~qWF~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l-~ 477 (821)
T 1ile_A 399 YATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQEL-K 477 (821)
T ss_dssp EECCEEEECGGGGHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHH-H
T ss_pred EecchhhhchHHHHHHHHHHhcCeEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHH-H
Confidence 11 15899999999999999999999888754433 22322 0
Q ss_pred cCCcccccCCCCCCCCCCc-CCccceeecccCCCCCccccCCCccccccchh-hhhhhcCCCCChhhhhhhhccccCCce
Q 003404 398 TLPELDDFTPTGTGEPPLS-KAVSWVQTTEHSSGKPARRETSTMPQWAGSCW-YYLRFMDPKNSKELVDKTKERYWSPVD 475 (823)
Q Consensus 398 ~lp~~~~~~~~g~~~~~l~-~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw-~yl~~~~p~n~~~~~~~~~~~~w~p~D 475 (823)
..+. +. +.|+ ..+. ...+|+...|| ||++++||+|||||||||+| +|...++|.+.++.| ++|+|+|
T Consensus 478 ~~~~--~~-~~~~--~~l~~~~~d~~~~~~~-~g~~~~r~~dvld~WfdS~~~~~~~~~~p~~~~~~f-----~~~~P~d 546 (821)
T 1ile_A 478 ARAT--KP-LPEP--FDPHRPYVDQVELACA-CGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVF-----RESFPAD 546 (821)
T ss_dssp HHBS--SC-CCSS--CCCSHHHHTTCEEECT-TSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHH-----HHHSSBS
T ss_pred hhcc--cc-ccch--hhhccccccccccCCC-CCCchhhcccccceecccccchHhhcCCCccchHHH-----hhcCCcc
Confidence 0000 00 0000 0111 12345667888 99999999999999999985 455567776543333 4578999
Q ss_pred eeecChhhHHHHHHHHHHHHHHHHHhcCc-cCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccch
Q 003404 476 VYVGGAEHAVLHLLYARFWHKVLYDIGVV-STKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPE 554 (823)
Q Consensus 476 ~~v~G~D~~~~Hlly~rfw~~~L~~~~~~-~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 554 (823)
+|++|+||+ |||+.+++.++.. ...+||+++++||||++.
T Consensus 547 l~~~G~D~~-------r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~-------------------------------- 587 (821)
T 1ile_A 547 FIAEGIDQT-------RGWFNSLHQLGVMLFGSIAFKNVICHGLILDE-------------------------------- 587 (821)
T ss_dssp BEEEEGGGG-------GTHHHHHHHHHHHHHSSCSBSEEEEECCEECT--------------------------------
T ss_pred cccchhhhh-------ccHHHHHHHHHHHhcCCCCcceEEEEeeEECC--------------------------------
Confidence 999999997 8998888776654 457899999999999853
Q ss_pred hhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHH-HHHHHHH
Q 003404 555 EKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEG-VHRFLGR 633 (823)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~-~~~~l~r 633 (823)
+|+|||||+||+|+|.+++++||+|++|||||+.+++++|++|+++.+.+ +.+++++
T Consensus 588 ----------------------~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~k 645 (821)
T 1ile_A 588 ----------------------KGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLT 645 (821)
T ss_dssp ----------------------TSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHH
T ss_pred ----------------------CCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999989999999999999998 5788888
Q ss_pred HHHHHHcCC--CCCCCCCC-Cc--cCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHhc--------
Q 003404 634 MWRLIVGSS--LPDGTFKG-GT--VVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFI-NAAYK-------- 699 (823)
Q Consensus 634 ~~~~~~~~~--~~~~~~~~-~~--~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~-~~~~~-------- 699 (823)
+||++.... .....+.+ .. .......|.+++++++++++++.++|++|+|++|++.+++|+ +.+.+
T Consensus 646 l~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~ 725 (821)
T 1ile_A 646 LWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRR 725 (821)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHH
T ss_pred HHHHHHHHHHhhccccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 887652100 00001111 00 111234578899999999999999999999999999999999 54433
Q ss_pred --ccc-----------chHHHHHHHHHHhCccchhhHHHHHHHcCCC-----C-CccccCCCCCCccccc
Q 003404 700 --WEK-----------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS-----N-SLAYESFPKANPDYLK 750 (823)
Q Consensus 700 --~~~-----------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~-----~-sv~~~~WP~~~e~~l~ 750 (823)
|.. ...++++.+++||+|||||+|||||+.|+.. + ||+.+.||++++.+++
T Consensus 726 ~~~~~~~~~~r~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~~~~~~~~sv~~~~~P~~~~~~~~ 795 (821)
T 1ile_A 726 RFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVRLEAKESVHLADWPEADPALAD 795 (821)
T ss_dssp HHHTCTTTSSTTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTTSTTSCSSGGGSCCCCCCTTTCC
T ss_pred hcccCCCcHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHhccccccCCCCCceEeecCCCCCcccCC
Confidence 211 2347899999999999999999999999863 5 9999999998876543
No 5
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=9e-112 Score=1022.03 Aligned_cols=542 Identities=26% Similarity=0.418 Sum_probs=450.3
Q ss_pred CCCCcccccccCCccchHHHHHHHH----hCCCCh------------HHHHHHHHHHHHHHHHhcCcccCCCeeecCChh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIE----TGTHPK------------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPA 64 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~----~g~~p~------------~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~ 64 (823)
|+||+|+|+|||||||||+|+++.+ .|++|+ +|+.++++.|++||++||+|+||+|+|.||||+
T Consensus 69 m~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~ 148 (862)
T 1gax_A 69 MRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEK 148 (862)
T ss_dssp TTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHH
T ss_pred hCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHH
Confidence 8999999999999999999998874 477765 678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCC
Q 003404 65 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW 144 (823)
Q Consensus 65 y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~w 144 (823)
|++++||+|.+||++||||++.++|||||.|+|+|||+||++.. .
T Consensus 149 ~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e--~--------------------------------- 193 (862)
T 1gax_A 149 RSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETEP--T--------------------------------- 193 (862)
T ss_dssp HHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGEEECC--E---------------------------------
T ss_pred HHHHHHHHHHHHHHCCCEEecccccccCCCcCcccccccccccc--c---------------------------------
Confidence 99999999999999999999999999999999999999998531 1
Q ss_pred hHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHH
Q 003404 145 PESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLA 224 (823)
Q Consensus 145 p~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~ 224 (823)
.+.+++|+|++.+. .+|+|||||||||+|++||||||+++..
T Consensus 194 -------------~g~~~~v~f~~~~~------~~l~v~TTrPeTl~g~~avav~P~~~ry------------------- 235 (862)
T 1gax_A 194 -------------PGKLYTLRYEVEGG------GFIEIATVRPETVFADQAIAVHPEDERY------------------- 235 (862)
T ss_dssp -------------EEEEEEEECCCSSS------CCCEEEESCSGGGTTCCCEEECSSCCTT-------------------
T ss_pred -------------cceEEEEEEEecCC------CEEEEEeCCccccccceEEEECCCccHH-------------------
Confidence 23456899998531 5899999999999999999999998631
Q ss_pred hccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCC
Q 003404 225 SRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDE 304 (823)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~ 304 (823)
..|.|.++.||++|+.+||+.++||++++|||+||+|||||++||+++++||||++++|+.+ |
T Consensus 236 ----------------~~l~G~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~-G 298 (862)
T 1gax_A 236 ----------------RHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLE-G 298 (862)
T ss_dssp ----------------CSCTTCCCBCTTCCCBCCEEECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTT-S
T ss_pred ----------------HHHcCCEEECCCCCCeeeEEeccccccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCC-C
Confidence 13689999999999999999999999999999999999999999999999999999999886 4
Q ss_pred CCcccc--ccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCcee--------------------------
Q 003404 305 SSSQSE--KAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK-------------------------- 356 (823)
Q Consensus 305 ~~~~~~--~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~-------------------------- 356 (823)
++.+.. + .+.||...+|++.|+++|.+.|.+...
T Consensus 299 ~~~~~~~~g------------------~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWF 360 (862)
T 1gax_A 299 RMEGERVPE------------------ALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWW 360 (862)
T ss_dssp BBCSSSSCT------------------TTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEE
T ss_pred ccccccCCc------------------ccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEE
Confidence 443322 2 256666666777777777666543211
Q ss_pred ------------------Ee--------------eecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCcCCcccc
Q 003404 357 ------------------VN--------------YKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDD 404 (823)
Q Consensus 357 ------------------~~--------------~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~ 404 (823)
+. .+++||||||||+||+|||+|||++|+. ++|...+++ +.
T Consensus 361 v~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~~-i~v~~~~~l---~~--- 433 (862)
T 1gax_A 361 LRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQA-VNVPRPERY---LE--- 433 (862)
T ss_dssp ECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCC-EECCCGGGT---TC---
T ss_pred EEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceecCCCCE-EEEeccccc---cc---
Confidence 11 1689999999999999999999987764 444442221 00
Q ss_pred cCCCCCCCCCCcCCccceeecccCCCC-CccccCCCccccccch-hhhhhhcCCCCChhhhhhhhccccCCceeeecChh
Q 003404 405 FTPTGTGEPPLSKAVSWVQTTEHSSGK-PARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAE 482 (823)
Q Consensus 405 ~~~~g~~~~~l~~~~~w~~~~~~~~g~-~~~re~dt~d~WfdSs-w~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v~G~D 482 (823)
+. ..|++||. .++|++|||||||||+ |+|.++++|.+..+ .++|+|+|+|++|+|
T Consensus 434 -------~~----------~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~------~~~~~P~d~~v~G~D 490 (862)
T 1gax_A 434 -------DP----------TSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETED------LKAFYPGDVLVTGYD 490 (862)
T ss_dssp -------CC----------CSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCHH------HHHSCSBSCEEEEGG
T ss_pred -------cc----------hhhhhcCchheecCCcccceeeccCCcchhhccCCCchHH------HHhhCCceEEecCcc
Confidence 00 15788886 7999999999999986 99999999976533 267899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcC-ccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcccC
Q 003404 483 HAVLHLLYARFWHKVLYDIGV-VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSG 561 (823)
Q Consensus 483 ~~~~Hlly~rfw~~~L~~~~~-~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (823)
|+ |||+.++..+++ ..+.+||+++++||||++.
T Consensus 491 ii-------~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~--------------------------------------- 524 (862)
T 1gax_A 491 IL-------FLWVSRMEVSGYHFMGERPFKTVLLHGLVLDE--------------------------------------- 524 (862)
T ss_dssp GT-------TTTHHHHHHHHHHHSSSCSBSEEEEECCEECT---------------------------------------
T ss_pred cc-------ccHHHHHHHHHHHhcCCCcccEEEEeeeEEcC---------------------------------------
Confidence 97 778777666654 3446799999999999853
Q ss_pred CceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHHHH---
Q 003404 562 DFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLI--- 638 (823)
Q Consensus 562 ~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~--- 638 (823)
+|+|||||+||+|+|.+++++||+|++||||++.+++++|++|+++.++++.+|++++||.+
T Consensus 525 ---------------~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~ 589 (862)
T 1gax_A 525 ---------------KGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFV 589 (862)
T ss_dssp ---------------TSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCCccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999888899999999999999999999998754
Q ss_pred HcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHhccc----------------
Q 003404 639 VGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFIN-AAYKWE---------------- 701 (823)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~-~~~~~~---------------- 701 (823)
..+. . .+.+ ........|+++++++++++++++++|++|+|++|++++++|++ .+.+|+
T Consensus 590 ~~~~-~--~~~~-~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~l~~~~~~~~ 665 (862)
T 1gax_A 590 LLSR-E--GFQA-KEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAGNAHTL 665 (862)
T ss_dssp HHHS-S--SCCC-CBCCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTTBHHHH
T ss_pred Hhcc-c--CCCC-ccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhHHHHHHcchhhhccHHHHH
Confidence 3221 1 1111 00113456889999999999999999999999999999999995 344431
Q ss_pred cchHHHHHHHHHHhCccchhhHHHHHHHcCCCCCccccCCCCCC
Q 003404 702 KHPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKAN 745 (823)
Q Consensus 702 ~~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~~sv~~~~WP~~~ 745 (823)
..+.++|+.+++||+|||||+|||||+.|+..+||+.+.||+++
T Consensus 666 ~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~sv~~~~wP~~~ 709 (862)
T 1gax_A 666 RTLEEVLAVLLKLLHPMMPFLTSELYQALTGKEELALEAWPEPG 709 (862)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHCCSCGGGSCCCCCC
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCeEEecCCCCCC
Confidence 12447899999999999999999999999767799999999986
No 6
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.5e-101 Score=950.56 Aligned_cols=604 Identities=24% Similarity=0.374 Sum_probs=434.6
Q ss_pred CCCCcccccccCCccchHHHHHHHHh---------------C---------CCChHHHHHHHHHHHHHHHHhcCcccCCC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIET---------------G---------THPKITTLRNINRFRTQLKSLGFSYDWNR 56 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~---------------g---------~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~ 56 (823)
|+||+|+|+|||||||||||++|.+. | .+|++|+.++++.|++||++||+++||+|
T Consensus 69 m~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r 148 (967)
T 1wz2_A 69 MQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSR 148 (967)
T ss_dssp HTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTS
T ss_pred cCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCC
Confidence 89999999999999999999987642 3 35788999999999999999999999999
Q ss_pred eeecCC--hhHHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHH
Q 003404 57 EISTIE--PAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADR 134 (823)
Q Consensus 57 ~~~T~~--p~y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~ 134 (823)
+|.||| |+|++++||+|.+|+++||||++.++|||||.|+|+|||+||++|.+..
T Consensus 149 ~~~T~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~----------------------- 205 (967)
T 1wz2_A 149 EFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVP----------------------- 205 (967)
T ss_dssp CCBCSTTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCC-----------------------
T ss_pred CeEECCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCce-----------------------
Confidence 999999 9999999999999999999999999999999999999999999874210
Q ss_pred hhccCCCCCChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhcccc--
Q 003404 135 LLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTT-- 212 (823)
Q Consensus 135 l~~~l~~l~wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~-- 212 (823)
.+..++|+|++.+. ..+.+++||||||||||||+||||||+++|+.+.+..+
T Consensus 206 -----------------------~~~~~~v~f~~~~~---~~~~~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~~~ 259 (967)
T 1wz2_A 206 -----------------------ILDYIIIKFELREN---GEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDK 259 (967)
T ss_dssp -----------------------EECCEEEEEECCCS---SSCCEEEEEESCGGGGGGCCEEEECSSSCEEEEEEECSSC
T ss_pred -----------------------eceeEEEEEEecCC---CCceEEEEEcCCchHhhhheEEEECCCCcEEEEEecCCCc
Confidence 12346899998532 12478999999999999999999999999987544320
Q ss_pred -chHHH-HHHHHHHhcc-ChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHH--
Q 003404 213 -QSQNI-EEYKNLASRK-SDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEF-- 287 (823)
Q Consensus 213 -~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~-- 287 (823)
....+ ++........ .+. ..+...+|..|.|+++.||++++++||+.++||++++|||+||+|||||++||++
T Consensus 260 ~~~~i~a~~~~~~~~~~~~~~--~~~~~~~G~~l~G~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~ 337 (967)
T 1wz2_A 260 EETWIVSKEAAYKLSFQDREI--EVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALE 337 (967)
T ss_dssp EEEEEEEHHHHHHHHHSSCEE--EEEEECCSSTTSSCEEECSSSSCEEEEEECSSCCSSSTTSCEEECTTSCTTTTTTTS
T ss_pred ceeeehHHHHHHHHHhhccCc--EEEEEEEchhhcCCEEECCCCCCceEEEecccccCCCCcccEEeecCCCHHHHHHHH
Confidence 10000 1111111111 111 1233455667999999999999999999999999999999999999999999974
Q ss_pred --------HHHcCCc--------eeeeccCCC-CCCc------------cc---------cccccc---cceEecccCcc
Q 003404 288 --------ALKFDIS--------IHSVVMPDD-ESSS------------QS---------EKAYTG---EGLIVNSSNLI 326 (823)
Q Consensus 288 --------~~~~~l~--------~~~vv~~~~-~~~~------------~~---------~~~~~~---~g~~~~~~~~~ 326 (823)
|++|||| ++++|+.++ |.+. .. ...|.. +|++. +.
T Consensus 338 ~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~-~g--- 413 (967)
T 1wz2_A 338 DLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK-VP--- 413 (967)
T ss_dssp CCSCCSCCCCTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCC-SS---
T ss_pred hhccchhHHHHcCCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEe-cc---
Confidence 6889987 777775432 1100 00 011222 45554 22
Q ss_pred cccccCCCCHHHHHHHHHHHHHHcCCCce-------------------e-------E------------------e----
Q 003404 327 SGLDINGLSCQEATSKVIEWAEKTGNGKK-------------------K-------V------------------N---- 358 (823)
Q Consensus 327 ~~~~~~g~~~~~~~~~v~~~l~~~~~~~~-------------------~-------~------------------~---- 358 (823)
.+.|+.+.+|++.|++.|.+.|.+.. . + .
T Consensus 414 ---~~~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~~P~ 490 (967)
T 1wz2_A 414 ---PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPE 490 (967)
T ss_dssp ---SSCSSBHHHHTTTTHHHHHHHTSEEECCEESSSCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCEESS
T ss_pred ---CcCCcCHHHHHHHHHHHHHhCCCceEEEecCCCceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhccEeeCc
Confidence 37788888888888888877653200 0 0 0
Q ss_pred ----------eecCceeeeeccccCCcccE---EEeCCCCceeeCCCCccCCcCCcccccCCCCCCCCCCcCCccceeec
Q 003404 359 ----------YKLRDWLFARQRYWGEPIPV---VFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTT 425 (823)
Q Consensus 359 ----------~~l~DW~ISRQr~WG~PIPi---~~~~~~~~~~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~ 425 (823)
.+++||||||||+||+|||+ |.|+. ..++.+++....+..... ..
T Consensus 491 ~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~~------~~ds~iYv~~~~~~~~~~----------------~~ 548 (967)
T 1wz2_A 491 TRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIES------LSDSTIYMAYYTISRHIN----------------KL 548 (967)
T ss_dssp TTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSEECH------HHHTTSTHHHHHHHHHHH----------------HH
T ss_pred cccchHHHhhhcccCeeeccCCCCCccCCcCccccccc------CCCCceEeehhhhhhHHH----------------HH
Confidence 04689999999999999995 22210 001111110000000000 00
Q ss_pred ccCCCCC-ccccCCCccccccc---h---hhhh-hhcCCCCChhhhhhhhccccCCceeeecChhhHHHHHHHHHHHHHH
Q 003404 426 EHSSGKP-ARRETSTMPQWAGS---C---WYYL-RFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKV 497 (823)
Q Consensus 426 ~~~~g~~-~~re~dt~d~WfdS---s---w~yl-~~~~p~n~~~~~~~~~~~~w~p~D~~v~G~D~~~~Hlly~rfw~~~ 497 (823)
...+|.+ -.-..+++|+||.+ + +.+. ..+.|...-. -.++..++|+|+|+|++|+||+.+|+.|.++++..
T Consensus 549 ~~~~g~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~sG~~~~~~~-~~~~~~~~w~P~Di~~~G~D~i~~H~~~~~~~~~a 627 (967)
T 1wz2_A 549 RQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIH-EMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVA 627 (967)
T ss_dssp HHTTCCCGGGCCHHHHHHTTTSCCCHHHHHHHHHHHTCCHHHHH-HHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHH
T ss_pred HHhcCCChHHcCcccceeeccCccccCccccchhhcCCCHHHHh-hhHHHHHhhCCCeEEeeeeCcchhHHHHHHHHHHH
Confidence 0001100 01123677888744 1 1111 2333432100 01122368899999999999999999988887766
Q ss_pred HHHhcCccCCCcc-ccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcccCCceeeccCcchhccc
Q 003404 498 LYDIGVVSTKEPF-KCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIA 576 (823)
Q Consensus 498 L~~~~~~~~~~Pf-~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (823)
+++. .|| +++++||||+.+
T Consensus 628 ~~~~------~~~pk~v~~~G~v~~~------------------------------------------------------ 647 (967)
T 1wz2_A 628 IFRE------EHWPKGIAVNGFGTLE------------------------------------------------------ 647 (967)
T ss_dssp HSCS------TTSCCCEEEECCEEES------------------------------------------------------
T ss_pred HcCc------ccccceEEEeeEEeeC------------------------------------------------------
Confidence 6543 355 899999999742
Q ss_pred cccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCC
Q 003404 577 RAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVND 656 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~ 656 (823)
|+|||||+||+|+|.+++++||+|++|||||+++++++|++|+++.++++.++++|+|+++...... .. + .....
T Consensus 648 -G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~--~~-~-~~~~~ 722 (967)
T 1wz2_A 648 -GQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEY--EV-K-GNVEL 722 (967)
T ss_dssp -SSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSS--CC-C-CCCCC
T ss_pred -CEEccccccCCCCHHHHHHHhChHHHHHHHHhCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhcC--CC-C-CcccC
Confidence 8999999999999999999999999999999889999999999999999999999999987432100 00 0 01112
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH-HHHHHHHhccc------------cchHHHHHHHHHHhCccchhhH
Q 003404 657 EEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAM-MEFINAAYKWE------------KHPRKIIEPFILLLAPYAPHMS 723 (823)
Q Consensus 657 ~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l-~~~~~~~~~~~------------~~~~~~l~~l~~lLaPi~P~~a 723 (823)
...|+++++++++++++++++|++|+|++|+.++ +.+++.+|.+. ..+.++|+.+++||+|||||+|
T Consensus 723 ~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k~~~~~~~~~~l~~~l~~l~~LLaP~~P~~a 802 (967)
T 1wz2_A 723 KDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHIC 802 (967)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHTTTSHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 3468899999999999999999999999999865 57777776431 1345899999999999999999
Q ss_pred HHHHHHcCCCCCccccCCCCCCccccc
Q 003404 724 EELWFRLGHSNSLAYESFPKANPDYLK 750 (823)
Q Consensus 724 Eelw~~L~~~~sv~~~~WP~~~e~~l~ 750 (823)
||||+.|+.++||+.+.||++++.+++
T Consensus 803 Eeiw~~L~~~~sv~~~~wP~~~~~~~d 829 (967)
T 1wz2_A 803 EELWEKLGGEGFVSLAKWPEPVEEWWN 829 (967)
T ss_dssp HHHHHHSSCCSCGGGSCCCCCCSSCCC
T ss_pred HHHHHhcCCCCceeccCCCCCCcccCC
Confidence 999999988889999999999876543
No 7
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.6e-95 Score=884.66 Aligned_cols=585 Identities=25% Similarity=0.374 Sum_probs=421.6
Q ss_pred CCCCcccccccCCccchHHHHHHHHh------------------------CCCChHHHHHHHHHHHHHHHHhcCcccCCC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIET------------------------GTHPKITTLRNINRFRTQLKSLGFSYDWNR 56 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~------------------------g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~ 56 (823)
|+||+|++++||||||||||.+|.+. +..|++|+.++++.|++||++||+++||++
T Consensus 69 m~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~ 148 (810)
T 1wkb_A 69 MQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSR 148 (810)
T ss_dssp HHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGG
T ss_pred cCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCC
Confidence 78999999999999999999987642 246788999999999999999999999999
Q ss_pred eeecCC--hhHHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHH
Q 003404 57 EISTIE--PAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADR 134 (823)
Q Consensus 57 ~~~T~~--p~y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~ 134 (823)
+|.|+| |.|++++||+|.+|+++|+||++.++|+|||.|+|+|||+||++|.+..
T Consensus 149 ~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~----------------------- 205 (810)
T 1wkb_A 149 EFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVP----------------------- 205 (810)
T ss_dssp CCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCC-----------------------
T ss_pred ceEecCCchHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCCCc-----------------------
Confidence 999999 9999999999999999999999999999999999999999999874320
Q ss_pred hhccCCCCCChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhcccc--
Q 003404 135 LLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTT-- 212 (823)
Q Consensus 135 l~~~l~~l~wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~-- 212 (823)
.+..++|+|++.+.+ .+.+++||||||||||||+||||||+|+|+.+.+..+
T Consensus 206 -----------------------~~~~~~v~f~~~~~~---~~~~l~v~TTrP~Tl~g~~av~v~P~~~y~~~~~~~~~~ 259 (810)
T 1wkb_A 206 -----------------------ILDYIIIKFELRENG---EVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDK 259 (810)
T ss_dssp -----------------------EEEEEEEEEECCSSC---SCCEEEEEESCGGGGGGCCEEEECTTSCEEEEEEEETTE
T ss_pred -----------------------cceeEEEEEEccCCC---CceEEEEEcCCchHhhhhhEEEECCCCcEEEEEecCCCc
Confidence 112357899985321 2378999999999999999999999999986543220
Q ss_pred -chHHH-HHHHHHHhcc-ChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHH--
Q 003404 213 -QSQNI-EEYKNLASRK-SDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEF-- 287 (823)
Q Consensus 213 -~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~-- 287 (823)
....+ ++.+...... ... ..+...+|..|.|+++.||++++++||+.++||++++|||+||+|||||++||++
T Consensus 260 ~~~~i~~~~~~~~~~~~~~~~--~~~~~~~G~~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~ 337 (810)
T 1wkb_A 260 EETWIVSKEAAYKLSFQDREI--EVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALE 337 (810)
T ss_dssp EEEEEEEHHHHHHHTTSSCEE--EEEEECTTTTTTTCEEECSSSCCEEEEEECTTSCTTSTTSCEEECTTTCHHHHHHHC
T ss_pred ceeeeeHHHHHHHHHhhhcce--EEEEEEEchhhcCCEEECCCCCCeeEEEecCcccCCCCceeEEeCCCCCHHHHHHHH
Confidence 10000 1122111111 011 1123445667999999999999999999999999999999999999999999975
Q ss_pred --------HHHcCCc--------eeeeccCCC-CCCc------------cc---------cccccc---cceEecccCcc
Q 003404 288 --------ALKFDIS--------IHSVVMPDD-ESSS------------QS---------EKAYTG---EGLIVNSSNLI 326 (823)
Q Consensus 288 --------~~~~~l~--------~~~vv~~~~-~~~~------------~~---------~~~~~~---~g~~~~~~~~~ 326 (823)
|++|||| ++++|+.++ +.+. .. ...|.+ +|.++ ++
T Consensus 338 ~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~-~g--- 413 (810)
T 1wkb_A 338 DLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK-VP--- 413 (810)
T ss_dssp CCSCCSCCCTTCSCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEEC-SG---
T ss_pred hhccchhHHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEe-cc---
Confidence 6788987 788876532 1100 00 112222 56665 33
Q ss_pred cccccCCCCHHHHHHHHHHHHHHcCCCce-------------------e---Ee---------e----------------
Q 003404 327 SGLDINGLSCQEATSKVIEWAEKTGNGKK-------------------K---VN---------Y---------------- 359 (823)
Q Consensus 327 ~~~~~~g~~~~~~~~~v~~~l~~~~~~~~-------------------~---~~---------~---------------- 359 (823)
.++|+.+.+|++.++++|.+.|.+.. . -+ +
T Consensus 414 ---~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~~~~~~~P~ 490 (810)
T 1wkb_A 414 ---PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPE 490 (810)
T ss_dssp ---GGTTEEHHHHHHHHHHHHHTTTSEEEEEEESSSCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHHHTSEEESG
T ss_pred ---CcCCeEHHHhHHHHHHHHHhCCCeeeEEecCCCCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhhcccEEECc
Confidence 48999999999999999998774310 0 01 0
Q ss_pred -----------ecCceeeeeccccCCcccE---EEeCCCCceeeCCCCccCCcCCcccccCCCCCCCCCCcCCccceeec
Q 003404 360 -----------KLRDWLFARQRYWGEPIPV---VFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTT 425 (823)
Q Consensus 360 -----------~l~DW~ISRQr~WG~PIPi---~~~~~~~~~~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~ 425 (823)
+++||||||||+||+|||+ |.|+. ..++.+++....+..... ..
T Consensus 491 ~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~------~~~~~iYv~~~~~~~~~~----------------~~ 548 (810)
T 1wkb_A 491 TRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIES------LSDSTIYMAYYTISRHIN----------------KL 548 (810)
T ss_dssp GGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEECT------TTSSSSHHHHHHHHHHHH----------------HH
T ss_pred chhchHHHHhhcccCccccccCCCCCcCCcCcceeccc------CCCCceeeehhhhHHHHH----------------Hh
Confidence 3679999999999999994 33421 011111110000000000 00
Q ss_pred ccCCCCC-ccccCCCccccccc---h---hhhh-hhcCCCCChhhhhhhhccccCCceeeecChhhHHHHHHHHHHHHHH
Q 003404 426 EHSSGKP-ARRETSTMPQWAGS---C---WYYL-RFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKV 497 (823)
Q Consensus 426 ~~~~g~~-~~re~dt~d~WfdS---s---w~yl-~~~~p~n~~~~~~~~~~~~w~p~D~~v~G~D~~~~Hlly~rfw~~~ 497 (823)
...+|.+ -.-..+++|+||.+ + +.+. .++.|...-. -.++..++|+|+|+|++|+||+.+|+.|.++++..
T Consensus 549 ~~~~~~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~sg~~~~~~~-~~~~~~~~~~p~Di~~~G~D~~~~H~~~~~~~~~~ 627 (810)
T 1wkb_A 549 RQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIH-EMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVA 627 (810)
T ss_dssp HHTTCCCGGGCCHHHHHHHHHSCCCHHHHHHHHHHHSCCHHHHH-HHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHH
T ss_pred HhhcCCCHHHcCccceeeeeccccccCccccchhhhCCCHHHHH-hhHHHHHhhCCceEEeecccccccHHHHHHHHHHH
Confidence 0001100 01123677777733 1 1111 2233321100 00122367899999999999999999998888776
Q ss_pred HHHhcCccCCCcc-ccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcccCCceeeccCcchhccc
Q 003404 498 LYDIGVVSTKEPF-KCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIA 576 (823)
Q Consensus 498 L~~~~~~~~~~Pf-~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (823)
+++. .|+ +++++||||+.+
T Consensus 628 ~~~~------~~~pk~v~~~G~v~~~------------------------------------------------------ 647 (810)
T 1wkb_A 628 IFRE------EHWPKGIAVNGFGTLE------------------------------------------------------ 647 (810)
T ss_dssp HSCG------GGSCCEEEEECCEEET------------------------------------------------------
T ss_pred HcCc------cccccEEEEEeEEEeC------------------------------------------------------
Confidence 6553 244 899999999742
Q ss_pred cccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCC
Q 003404 577 RAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVND 656 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~ 656 (823)
|+|||||+||+|+|.+++++||+|++|||+|++++++++++|+++.++++.++++|+|+++...... . .+ .....
T Consensus 648 -G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~--~-~~-~~~~~ 722 (810)
T 1wkb_A 648 -GQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEY--E-VK-GNVEL 722 (810)
T ss_dssp -TBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTC--C-CC-SCCCC
T ss_pred -CeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhc--c-Cc-ccccC
Confidence 8999999999999999999999999999999889999999999999999999999999987432100 0 00 01112
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH-HHHHHHHhccc------------cchHHHHHHHHHHhCccchhhH
Q 003404 657 EEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAM-MEFINAAYKWE------------KHPRKIIEPFILLLAPYAPHMS 723 (823)
Q Consensus 657 ~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l-~~~~~~~~~~~------------~~~~~~l~~l~~lLaPi~P~~a 723 (823)
...|.+++.+++++++++.++|++|+|++|+.++ +.+++.+|.+. ..+.++++.+++||+|||||+|
T Consensus 723 ~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~~n~yi~~~k~~~~~~~~~~l~~~l~~l~~lLaP~~P~~a 802 (810)
T 1wkb_A 723 KDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHIC 802 (810)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHTTTSHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3457889999999999999999999999999855 68888877541 1345899999999999999999
Q ss_pred HHHHHHcC
Q 003404 724 EELWFRLG 731 (823)
Q Consensus 724 Eelw~~L~ 731 (823)
||||+.||
T Consensus 803 Eelw~~Lg 810 (810)
T 1wkb_A 803 EELWEKLG 810 (810)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhcC
Confidence 99999985
No 8
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=2e-72 Score=672.10 Aligned_cols=418 Identities=21% Similarity=0.340 Sum_probs=344.1
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+||+|+|++||||||+|||++|.+.|++|++++.++++.|+++|++||+++|| +++|+||+|++++|++|.+|+++|
T Consensus 38 m~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~lgis~D~--~~rT~d~~~~~~v~~~f~~L~~kG 115 (722)
T 1rqg_A 38 LKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQRAKISFDF--FGRTELPIHYKLSQEFFLKAYENG 115 (722)
T ss_dssp HTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCCCSE--EEETTSHHHHHHHHHHHHHHHHTT
T ss_pred hcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCC--CeeCCCHHHHHHHHHHHHHHHHCC
Confidence 799999999999999999999999999999999999999999999999999886 899999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCcccc-----------------------------ccCccccCCCCeEEeccchhhhhHhhh
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEV-----------------------------VDGVSERGGHPVIRKPMRQWMLKITEY 131 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev-----------------------------~~g~~~~~~~~v~~~~~~qw~~~it~y 131 (823)
+||++.++|+|||.|+|+|||.+| .+++|||||.+++.+..+||||++++|
T Consensus 116 ~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~ 195 (722)
T 1rqg_A 116 HLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDF 195 (722)
T ss_dssp CEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGT
T ss_pred CEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhcccccChhhccCCcccCCCcEeEEEEeccEEEEhHHH
Confidence 999999999999999999987654 456899999999999999999999999
Q ss_pred HHHhhccCCCCCChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccc
Q 003404 132 ADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVST 211 (823)
Q Consensus 132 ~~~l~~~l~~l~wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~ 211 (823)
+++|++.+++..||+.++.++++||+
T Consensus 196 ~~~l~~~~~~~~wp~~~~~~~~~wl~------------------------------------------------------ 221 (722)
T 1rqg_A 196 AERLKRWIEKQPWKPNVKNMVLSWIE------------------------------------------------------ 221 (722)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHHT------------------------------------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH------------------------------------------------------
Confidence 99999998877799988888888861
Q ss_pred cchHHHHHHHHHHhccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHc
Q 003404 212 TQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKF 291 (823)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~ 291 (823)
T Consensus 222 -------------------------------------------------------------------------------- 221 (722)
T 1rqg_A 222 -------------------------------------------------------------------------------- 221 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeeeccCCCCCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeeccc
Q 003404 292 DISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRY 371 (823)
Q Consensus 292 ~l~~~~vv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr~ 371 (823)
+ +++|||||||++
T Consensus 222 ---------------------------------------------------------~----------gl~dw~ISR~~~ 234 (722)
T 1rqg_A 222 ---------------------------------------------------------E----------GLEERAITRDLN 234 (722)
T ss_dssp ---------------------------------------------------------T----------CCCCEECEECCS
T ss_pred ---------------------------------------------------------C----------CCcccceecccc
Confidence 0 478999999999
Q ss_pred cCCcccEEEeCCCCceeeCCCCccCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhh
Q 003404 372 WGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYL 451 (823)
Q Consensus 372 WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl 451 (823)
||+|||++++ | . +..++|||||+...|+
T Consensus 235 WG~piP~~~~---g------------------------~-------------------------~~~~iyvW~da~i~y~ 262 (722)
T 1rqg_A 235 WGIPVPLDEE---D------------------------M-------------------------KGKVLYVWFEAPIGYI 262 (722)
T ss_dssp SSCBCSCCCS---S------------------------S-------------------------TTCEECHHHHGGGHHH
T ss_pred CccccCcccc---C------------------------C-------------------------CCCEEEEEeccccchh
Confidence 9999997321 1 0 1257899999987776
Q ss_pred hhc--CCCCChhhhhhhhccccC--C---ceeeecChhhHHHHHHHHHHHHHHHHHhcC------c-cCCCccccccccc
Q 003404 452 RFM--DPKNSKELVDKTKERYWS--P---VDVYVGGAEHAVLHLLYARFWHKVLYDIGV------V-STKEPFKCVINQG 517 (823)
Q Consensus 452 ~~~--~p~n~~~~~~~~~~~~w~--p---~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~------~-~~~~Pf~~l~~~G 517 (823)
... ++.... ...+...+|. + .++|++|+|++.||.+ +|+++|..++. . ....| +++++||
T Consensus 263 ~~~~~~~~~~g--~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~---~wpA~l~~~~~~l~~d~~rg~~~P-k~v~~hG 336 (722)
T 1rqg_A 263 SITIEHFKRIG--KPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAI---FWPAFLMAYGKYKDEEVEAEWNLP-YDIPANE 336 (722)
T ss_dssp HHHHHHHHHTT--CTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHT---HHHHHHHTTCCBCSSSCCBCBCCC-SBCCEEC
T ss_pred hhHHHHHhhcC--CchHHHhccCCCCCCCeeEEEccccccccchh---hhHHHHhccCCCcccccccCCCCC-CEEEEee
Confidence 421 000000 0001224664 2 2389999999999965 59888877652 1 13578 9999999
Q ss_pred eEeccceeeEEecCCCccccCCCCCccccccccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHH
Q 003404 518 IILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE 597 (823)
Q Consensus 518 ~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~ 597 (823)
||+.+ |+|||||+||+|+|.+++++
T Consensus 337 ~v~~~-------------------------------------------------------G~KMSKS~GNvV~p~d~i~~ 361 (722)
T 1rqg_A 337 YLTLE-------------------------------------------------------GKKFSTSRNWAIWVHEFLDV 361 (722)
T ss_dssp CEEET-------------------------------------------------------TEECBTTTTBSCBHHHHTTT
T ss_pred eEEeC-------------------------------------------------------CeeeeeeCCCcCCHHHHHHh
Confidence 99742 89999999999999999999
Q ss_pred hCcchheeeeeecCCccCCccccccchHH---------HHHHHHHHHHHHHcCCCCCCCCCCCccC---CCCcchHHHHH
Q 003404 598 YGADSLRLYEMFMGPFRDSKTWNTSGIEG---------VHRFLGRMWRLIVGSSLPDGTFKGGTVV---NDEEPTLEQLC 665 (823)
Q Consensus 598 yGaD~lRl~ll~~~~~~~d~~~s~~~i~~---------~~~~l~r~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~ 665 (823)
||+|++||||++.+++++|.+|+++.+.. ..|+++|+++++.... ++.++ .....|.+++.
T Consensus 362 ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~-------~~~~~~~~~~~~~d~~ll~ 434 (722)
T 1rqg_A 362 FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRYF-------DGVVPERGELDELDREALE 434 (722)
T ss_dssp SCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHS-------TTBCCCCCCCCHHHHHHHH
T ss_pred cCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCCCcccCCHHHHHHHH
Confidence 99999999999888999999999887655 4577888888775321 11111 12345788999
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcccc--------------------chHHHHHHHHHHhCccchhhHHH
Q 003404 666 TLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK--------------------HPRKIIEPFILLLAPYAPHMSEE 725 (823)
Q Consensus 666 ~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~~--------------------~~~~~l~~l~~lLaPi~P~~aEe 725 (823)
+++++++++.++|++|+|++|++++|+|++..|.|.. .+.++++.+++||+|||||+||+
T Consensus 435 ~l~~~~~~v~~~~e~~~f~~A~~~i~~~~~~~n~Yi~~~kpw~~~k~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aee 514 (722)
T 1rqg_A 435 EIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEK 514 (722)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 9999999999999999999999999999987776311 02368899999999999999999
Q ss_pred HHHHcCCCCCccccCCCCC
Q 003404 726 LWFRLGHSNSLAYESFPKA 744 (823)
Q Consensus 726 lw~~L~~~~sv~~~~WP~~ 744 (823)
||++|+.+. + ..||..
T Consensus 515 i~~~L~~~~-~--~~w~~~ 530 (722)
T 1rqg_A 515 IWHLLNLDE-V--KRWEFR 530 (722)
T ss_dssp HHHHTTCCS-C--CCSSCC
T ss_pred HHHHcCCCc-c--cCchhc
Confidence 999998653 2 578764
No 9
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=8.7e-72 Score=652.67 Aligned_cols=425 Identities=21% Similarity=0.280 Sum_probs=331.7
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+||+|+|++||||||||||++|.+.|++|+++++++++.|+++|++||+++|| +++|+||+|++.+|++|.+|+++|
T Consensus 44 ~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G 121 (542)
T 3u1f_A 44 VKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQMDYSIDY--FIRTTNEQHKAVVKELWTKLEQKG 121 (542)
T ss_dssp HTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCCSE--EEETTCHHHHHHHHHHHHHHHHTT
T ss_pred hcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccCc--CccCCCHHHHHHHHHHHHHHhhcC
Confidence 799999999999999999999999999999999999999999999999999997 789999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccccC---------ccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCChHHHHHH
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVDG---------VSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEM 151 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~g---------~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~wp~~v~~~ 151 (823)
+||++.++|+|||.|+|+||++||+++ .|++||.+++.+..+||||++++|+++|++.++.
T Consensus 122 ~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~---------- 191 (542)
T 3u1f_A 122 DIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYHA---------- 191 (542)
T ss_dssp CEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHH----------
T ss_pred cEEecceeEEeeccCcccchhhhhhccccccCccccccCCCCCcceeeccccceecchhHHHHHHHHHhh----------
Confidence 999999999999999999999999754 4789999999999999999999999998653210
Q ss_pred HHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhh
Q 003404 152 QRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLE 231 (823)
Q Consensus 152 q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (823)
. .+ .
T Consensus 192 -------~------------~~----------------------------~----------------------------- 195 (542)
T 3u1f_A 192 -------N------------PG----------------------------C----------------------------- 195 (542)
T ss_dssp -------C------------TT----------------------------S-----------------------------
T ss_pred -------c------------cc----------------------------c-----------------------------
Confidence 0 00 0
Q ss_pred hhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCccccc
Q 003404 232 RTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEK 311 (823)
Q Consensus 232 ~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~ 311 (823)
+.
T Consensus 196 -------------------------------------------------------------------~~----------- 197 (542)
T 3u1f_A 196 -------------------------------------------------------------------IV----------- 197 (542)
T ss_dssp -------------------------------------------------------------------EE-----------
T ss_pred -------------------------------------------------------------------cC-----------
Confidence 00
Q ss_pred cccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeeccc----cCCcccEEEeCCCCce
Q 003404 312 AYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRY----WGEPIPVVFLDGTGET 387 (823)
Q Consensus 312 ~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr~----WG~PIPi~~~~~~~~~ 387 (823)
....++...+|+.+ .++||||||||+ ||+|||.. .+
T Consensus 198 ------------------------P~~~~~~~~~~~~~----------~l~Dw~ISRq~~~~~~WGipiP~~----~~-- 237 (542)
T 3u1f_A 198 ------------------------PEFRRREVIRAVEK----------GLPDLSVSRARATLHNWAIPVPGN----PD-- 237 (542)
T ss_dssp ------------------------SHHHHHHHHHHHHH----------CCCCEECEEEGGGGTTCSCEETTE----EE--
T ss_pred ------------------------CchhhHhHhhhhhc----------cccccCccccccCcCCCCCccCCC----cC--
Confidence 01123455666665 589999999998 99999931 11
Q ss_pred eeCCCCccCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhhhc----CCCCC-hhh
Q 003404 388 VPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFM----DPKNS-KEL 462 (823)
Q Consensus 388 ~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~~----~p~n~-~~~ 462 (823)
.++++|||+...|+... +.... ...
T Consensus 238 --------------------------------------------------~~~~vw~da~~~~~~~~~~~~~~~g~~~~~ 267 (542)
T 3u1f_A 238 --------------------------------------------------HXVYVWLDALTNYLTGSRLRVDESGKEVSL 267 (542)
T ss_dssp --------------------------------------------------EEECHHHHHHTHHHHHHTEEECTTSCEEEE
T ss_pred --------------------------------------------------eeeeeeeccchhhhhhhhccccccCCcccc
Confidence 24567777766555321 11000 001
Q ss_pred hhhhhccccCCceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCC
Q 003404 463 VDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTD 542 (823)
Q Consensus 463 ~~~~~~~~w~p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~ 542 (823)
.+.......+|+|+|++|+|++.||.+ +|++.|...|. .|++.+++|||+..
T Consensus 268 ~d~~~~~~~~p~d~~~~G~D~~~fh~~---~~~a~l~~~g~----~~~~~v~~hg~l~~--------------------- 319 (542)
T 3u1f_A 268 VDDFNELERFPADVHVIGKDILKFHAI---YWPAFLLSAGL----PLPKKIVAHGWWTK--------------------- 319 (542)
T ss_dssp CSSGGGTTCCSCSEEEEEGGGHHHHHT---HHHHHHHHHTC----CCCSCEEEECCCEE---------------------
T ss_pred cchhhhhcCCcceEEEecccccccccc---hhHHHHHhhcc----cccceeccccceec---------------------
Confidence 111111223699999999999999966 48888888874 67899999998753
Q ss_pred ccccccccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCcccccc
Q 003404 543 TLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTS 622 (823)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~ 622 (823)
+|+|||||+||+|+|.+++++||+|+|||||++.+++++|++|+++
T Consensus 320 ----------------------------------~G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~ 365 (542)
T 3u1f_A 320 ----------------------------------DRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDK 365 (542)
T ss_dssp ----------------------------------TTBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHH
T ss_pred ----------------------------------CCceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHH
Confidence 3899999999999999999999999999999988999999999999
Q ss_pred chHHHHH--HHHHHHHHHHcCCCCCCCCCCCccC---CCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q 003404 623 GIEGVHR--FLGRMWRLIVGSSLPDGTFKGGTVV---NDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAA 697 (823)
Q Consensus 623 ~i~~~~~--~l~r~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~ 697 (823)
.+.+..| ++++++|++.........+ .+..+ .....|+++++++++++++++++|++|+|++|+++|++|++.+
T Consensus 366 ~~~~~~n~~l~n~l~N~~~r~~~~~~~~-~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~ 444 (542)
T 3u1f_A 366 NMIARLNGELADTLGNLVMRCTSAKINV-NGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAI 444 (542)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHHCTTTST-TSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhhhcc-cCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887655 5555655542211111111 11111 2245688999999999999999999999999999999999877
Q ss_pred hcccc--------------------chHHHHHHHHHHhCccchhhHHHHHHHcCCCC----CccccCCCCC
Q 003404 698 YKWEK--------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHSN----SLAYESFPKA 744 (823)
Q Consensus 698 ~~~~~--------------------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~~----sv~~~~WP~~ 744 (823)
|.|.. .+.++++.+++||+|||||+|||||+.||.+. ++....|+.+
T Consensus 445 n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~~~~~~~~~~~~~~~l 515 (542)
T 3u1f_A 445 NAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHRKGIENFEFGAV 515 (542)
T ss_dssp HHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGGSSGGGGSTTCS
T ss_pred HHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCCCCCccccchhhccccCC
Confidence 76311 12267888999999999999999999998642 3333455544
No 10
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=3.9e-68 Score=618.73 Aligned_cols=406 Identities=22% Similarity=0.375 Sum_probs=329.9
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+||+|+|++||||||+|||++|.+.|++|++++.++++.+++++++||+++| ++++|++|+|.+.++++|.+|+++|
T Consensus 47 ~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G 124 (524)
T 2x1l_A 47 LDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAG 124 (524)
T ss_dssp HTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTT
T ss_pred hcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC--CCeecCCHHHHHHHHHHHHHHHHCC
Confidence 68999999999999999999999999999999999999999999999999888 8999999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccccC----ccc-cCCCCeEEeccchhhhhHhhhHHHhhccCCCCCChHHHHHHHHhh
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVDG----VSE-RGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNW 155 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~g----~~~-~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~wp~~v~~~q~~w 155 (823)
+||++..+|+|||.|+|+|++.|+++| .|+ +||.+++.+...||||++++|+++|++.++.. ..|
T Consensus 125 ~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~----------~~~ 194 (524)
T 2x1l_A 125 DIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEH----------PEF 194 (524)
T ss_dssp CEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHC----------GGG
T ss_pred CEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhC----------CCe
Confidence 999999999999999999999999866 477 99999999999999999999999987643100 000
Q ss_pred hcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhh
Q 003404 156 IGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTEL 235 (823)
Q Consensus 156 ig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (823)
+.|
T Consensus 195 ------------------------------------------i~p----------------------------------- 197 (524)
T 2x1l_A 195 ------------------------------------------IGP----------------------------------- 197 (524)
T ss_dssp ------------------------------------------EES-----------------------------------
T ss_pred ------------------------------------------eCC-----------------------------------
Confidence 000
Q ss_pred hhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCccccccccc
Q 003404 236 QKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTG 315 (823)
Q Consensus 236 ~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~~~~~ 315 (823)
T Consensus 198 -------------------------------------------------------------------------------- 197 (524)
T 2x1l_A 198 -------------------------------------------------------------------------------- 197 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeeccc-cCCcccEEEeCCCCceeeCCCCc
Q 003404 316 EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRY-WGEPIPVVFLDGTGETVPLHEAE 394 (823)
Q Consensus 316 ~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr~-WG~PIPi~~~~~~~~~~~v~~~~ 394 (823)
...++.+.+|+.. +++||||||||+ ||+|||. +
T Consensus 198 ---------------------~~~~~~~~~~~~~----------~l~Dw~iSRqr~~WG~~iP~--~------------- 231 (524)
T 2x1l_A 198 ---------------------DARRNEIVSFVSG----------GLKDLSISRTTFDWGVPVPD--H------------- 231 (524)
T ss_dssp ---------------------HHHHHHHHHHHTT----------CCCCEECEESSCCSSCEETT--E-------------
T ss_pred ---------------------HHHHHHHHHHHHc----------CCcccceECCCCCcCccCCC--C-------------
Confidence 0112333344432 689999999996 9999991 1
Q ss_pred cCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhh-hcCCCCChhhhhhhhccccCC
Q 003404 395 LPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLR-FMDPKNSKELVDKTKERYWSP 473 (823)
Q Consensus 395 lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~-~~~p~n~~~~~~~~~~~~w~p 473 (823)
+.+||||||||+|+|+. .++|.+....+ .+|+|
T Consensus 232 -----------------------------------------~~~~~yvWfds~~~~~~~~g~p~~~~~~~-----~~~~p 265 (524)
T 2x1l_A 232 -----------------------------------------PDHVMYVWVDALTNYLTGVGFPDTESESF-----RRYWP 265 (524)
T ss_dssp -----------------------------------------EEEEECHHHHHHTHHHHTTTTTCTTSHHH-----HHHCS
T ss_pred -----------------------------------------CCCEEEEecCCchHHHHHcCCCCCchHHH-----HhhCC
Confidence 11478999999987765 46676433222 34569
Q ss_pred ceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccc
Q 003404 474 VDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIP 553 (823)
Q Consensus 474 ~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 553 (823)
+|+|++|+||+.+|.+ +|++.+...|. +||+++++||||+.+
T Consensus 266 ~di~~~G~D~~~fh~~---~~~a~l~~~g~----~~~~~v~~hG~v~~~------------------------------- 307 (524)
T 2x1l_A 266 ADLHMIGKDIIRFHTV---YWPAFLMSAGL----PLPKRIFAHGWLLNR------------------------------- 307 (524)
T ss_dssp CSEEEEEGGGHHHHHT---HHHHHHHHHTC----CCCSCEEEECCEEEC-------------------------------
T ss_pred CeEEEEeechhHhHHH---HHHHHHHHCCC----CCCcEEEECcEEEeC-------------------------------
Confidence 9999999999999966 58888877764 788999999999742
Q ss_pred hhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHH-----
Q 003404 554 EEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVH----- 628 (823)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~----- 628 (823)
|+|||||+||+|+|.+++++||+|++|||+++.+++++|++|+++.+.++.
T Consensus 308 ------------------------G~KMSKS~GN~v~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~ 363 (524)
T 2x1l_A 308 ------------------------GEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLA 363 (524)
T ss_dssp ------------------------SCSEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCC
T ss_pred ------------------------CcccCCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999987899999999999988765
Q ss_pred ----HHHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccc---
Q 003404 629 ----RFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE--- 701 (823)
Q Consensus 629 ----~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~--- 701 (823)
|+++|++.++.... . ... +. .......+.+++.+++++++.+.++|++|+|+.|++.+++|++..|.+.
T Consensus 364 n~l~n~~~r~~~~~~~~~-~-~~~-~~-~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~ 439 (524)
T 2x1l_A 364 NELGNLAQRSLSMVAKNL-G-AAV-PD-PGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQ 439 (524)
T ss_dssp CCCHHHHHHHHHHHHHHS-T-TBC-CC-CCCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-C-CCC-CC-ccccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555543211 0 000 00 0112345788899999999999999999999999999999998776531
Q ss_pred -------c--------------chHHHHHHHHHHhCccchhhHHHHHHHcCCC
Q 003404 702 -------K--------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS 733 (823)
Q Consensus 702 -------~--------------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~ 733 (823)
. ...++++.+++||+|||||+|||||+.|+.+
T Consensus 440 k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 492 (524)
T 2x1l_A 440 EPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQP 492 (524)
T ss_dssp CHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCC
T ss_pred CChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 1 1226778899999999999999999999865
No 11
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=1.1e-66 Score=603.79 Aligned_cols=400 Identities=23% Similarity=0.389 Sum_probs=324.8
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+||+|++++|||+||+|||.+|.+.|++|++++.++++.++++|++||+++| .+++|++|+|.+.++++|.+|+++|
T Consensus 38 ~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G 115 (500)
T 2d5b_A 38 LDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAG 115 (500)
T ss_dssp HTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTT
T ss_pred cCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcCC--CCcccCCHHHHHHHHHHHHHHHHCC
Confidence 68999999999999999999999999999999999999999999999999888 6899999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCChHHHHHHHHhhhcccC
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSE 160 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~wp~~v~~~q~~wig~s~ 160 (823)
+||++.++++|||.|+|+++++|+.+|.|++||.+++.+...||||++++|+++|++.++..
T Consensus 116 ~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~------------------ 177 (500)
T 2d5b_A 116 DIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQEN------------------ 177 (500)
T ss_dssp CEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTC------------------
T ss_pred CEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhC------------------
Confidence 99999999999999999999999999999999999999999999999999999987643210
Q ss_pred CeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhhhccc
Q 003404 161 GAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKT 240 (823)
Q Consensus 161 ~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (823)
|. .+.|
T Consensus 178 --------------------------~~--------~~~p---------------------------------------- 183 (500)
T 2d5b_A 178 --------------------------PD--------LIRP---------------------------------------- 183 (500)
T ss_dssp --------------------------TT--------SEES----------------------------------------
T ss_pred --------------------------CC--------eeCC----------------------------------------
Confidence 00 0000
Q ss_pred ceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCccccccccccceEe
Q 003404 241 GVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIV 320 (823)
Q Consensus 241 ~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~~~~~~g~~~ 320 (823)
T Consensus 184 -------------------------------------------------------------------------------- 183 (500)
T 2d5b_A 184 -------------------------------------------------------------------------------- 183 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeee--ccc-cCCcccEEEeCCCCceeeCCCCccCC
Q 003404 321 NSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFAR--QRY-WGEPIPVVFLDGTGETVPLHEAELPL 397 (823)
Q Consensus 321 ~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISR--Qr~-WG~PIPi~~~~~~~~~~~v~~~~lpv 397 (823)
...++.+.+|+.. +++|||||| ||+ ||+|||. +
T Consensus 184 ----------------~~~~~~~~~~l~~----------~l~Dw~iSRp~~~~~WG~piP~--~---------------- 219 (500)
T 2d5b_A 184 ----------------EGYRNEVLAMLAE----------PIGDLSISRPKSRVPWGIPLPW--D---------------- 219 (500)
T ss_dssp ----------------HHHHHHHHHHHTS----------CCCCEECEEETTTCCSSCEETT--E----------------
T ss_pred ----------------HHHHHHHHHHHhc----------CCCCeecccccccccCccccCC--C----------------
Confidence 0112333445432 689999999 885 9999993 1
Q ss_pred cCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhh-hcCCCCChhhhhhhhccccCCcee
Q 003404 398 TLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLR-FMDPKNSKELVDKTKERYWSPVDV 476 (823)
Q Consensus 398 ~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~-~~~p~n~~~~~~~~~~~~w~p~D~ 476 (823)
+.+++||||||.+.|+. .++|.+. . + +.++|+|+
T Consensus 220 --------------------------------------~~~v~~vWfds~~~y~~~~g~~~~~-~-~-----~~~~p~di 254 (500)
T 2d5b_A 220 --------------------------------------ENHVTFVWFDALLNYVSALDYPEGE-A-Y-----RTFWPHAW 254 (500)
T ss_dssp --------------------------------------EEEEECHHHHHHTHHHHTTTTTTCH-H-H-----HHHGGGEE
T ss_pred --------------------------------------CCCeeEEccccchhhHHHcCCCCCc-h-H-----HHcCCCeE
Confidence 11478999999876665 3566432 1 1 23459999
Q ss_pred eecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhh
Q 003404 477 YVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEK 556 (823)
Q Consensus 477 ~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 556 (823)
|++|+||+.+|.+ ||++.+..+|. .||+++++||||+.+
T Consensus 255 ~~~G~D~~~fh~~---~~~a~~~~~g~----~~~~~v~~~G~v~~~---------------------------------- 293 (500)
T 2d5b_A 255 HLIGKDILKPHAV---FWPTMLKAAGI----PMYRHLNVGGFLLGP---------------------------------- 293 (500)
T ss_dssp EEEEGGGHHHHHT---HHHHHHHHHTC----CCCSEEEEECCEECT----------------------------------
T ss_pred EEEeechhhhHHH---HHHHHHHHcCC----CCCcEEEECceEEeC----------------------------------
Confidence 9999999999966 68888877763 788999999999852
Q ss_pred hcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHH-------
Q 003404 557 VMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR------- 629 (823)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~------- 629 (823)
+|+|||||+||+|+|.+++++||+|++|||+++.++++++.+|+++.+.+..+
T Consensus 294 --------------------~G~KMSKS~GN~i~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l 353 (500)
T 2d5b_A 294 --------------------DGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDL 353 (500)
T ss_dssp --------------------TSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCC
T ss_pred --------------------CCCcccccCCCCCCHHHHHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHH
Confidence 28999999999999999999999999999999878999999999998877542
Q ss_pred --HHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcccc-----
Q 003404 630 --FLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK----- 702 (823)
Q Consensus 630 --~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~~----- 702 (823)
++.|+..++.... ++..+. ..+.+++.+++++++++.++|++|+|+.|++.+++|++..|.+..
T Consensus 354 ~n~~~r~~~~~~~~~-------~~~~~~--~~~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~w 424 (500)
T 2d5b_A 354 GNLVQRTRAMLFRFA-------EGRIPE--PVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPW 424 (500)
T ss_dssp HHHHHHHHHHHHHHS-------TTBCCC--CCCCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhc-------CCCCCc--hhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 3344443332110 111111 113567788999999999999999999999999999987766311
Q ss_pred ---------------chHHHHHHHHHHhCccchhhHHHHHHHcCCC
Q 003404 703 ---------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS 733 (823)
Q Consensus 703 ---------------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~ 733 (823)
...++++.+++||+|||||+|||||+.|+.+
T Consensus 425 ~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~~ 470 (500)
T 2d5b_A 425 ELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLK 470 (500)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCC
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHcCCC
Confidence 1235677889999999999999999999865
No 12
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=1.5e-66 Score=601.59 Aligned_cols=396 Identities=26% Similarity=0.413 Sum_probs=296.0
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+||+|++++||||||+|||++|.+.|++|++++.++++.|+++|++||+++| .+++|++|.|.+.++++|.+|+++|
T Consensus 40 ~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G 117 (497)
T 2csx_A 40 LRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEFLKIEYT--KFIRTTDPYHVKFVQKVFEECYKRG 117 (497)
T ss_dssp HTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTT
T ss_pred hcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcCC--CCccCCCHHHHHHHHHHHHHHHHCC
Confidence 68999999999999999999999999999999999999999999999999777 6899999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCcccccc-CccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCChHHHHHHHHhhhccc
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVD-GVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRS 159 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~-g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~wp~~v~~~q~~wig~s 159 (823)
+||++.++++|||.|+|+|+++|+++ |.|++||.+++.+...||||++++|+++|++.++..
T Consensus 118 ~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~----------------- 180 (497)
T 2csx_A 118 DIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKN----------------- 180 (497)
T ss_dssp CEEEEEC---------------------------------CCEEEEECTTSSHHHHHHHHHHC-----------------
T ss_pred CEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhC-----------------
Confidence 99999999999999999999999987 999999999999999999999999999987642110
Q ss_pred CCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhhhcc
Q 003404 160 EGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEK 239 (823)
Q Consensus 160 ~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (823)
|+.
T Consensus 181 ----------------------------------------~~~------------------------------------- 183 (497)
T 2csx_A 181 ----------------------------------------PEF------------------------------------- 183 (497)
T ss_dssp ----------------------------------------TTS-------------------------------------
T ss_pred ----------------------------------------CCe-------------------------------------
Confidence 000
Q ss_pred cceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCccccccccccceE
Q 003404 240 TGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLI 319 (823)
Q Consensus 240 ~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~~~~~~g~~ 319 (823)
+.+
T Consensus 184 -----------------------------------------------------------~~p------------------ 186 (497)
T 2csx_A 184 -----------------------------------------------------------IQP------------------ 186 (497)
T ss_dssp -----------------------------------------------------------BCS------------------
T ss_pred -----------------------------------------------------------eCc------------------
Confidence 000
Q ss_pred ecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeee--ccc-cCCcccEEEeCCCCceeeCCCCccC
Q 003404 320 VNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFAR--QRY-WGEPIPVVFLDGTGETVPLHEAELP 396 (823)
Q Consensus 320 ~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISR--Qr~-WG~PIPi~~~~~~~~~~~v~~~~lp 396 (823)
....+.+.+|+.. +++|||||| ||+ ||+|||. +
T Consensus 187 -----------------~~~~~~~~~~l~~----------~~~Dw~isR~~~~~~WG~~iP~--~--------------- 222 (497)
T 2csx_A 187 -----------------DYRRNEIISFVKQ----------GLKDLSVTRPRSRVKWGIPVPF--D--------------- 222 (497)
T ss_dssp -----------------HHHHHHHHHHHHH----------CCCCEECEEETTTCCSSEEETT--E---------------
T ss_pred -----------------HHHHHHHHHHHhc----------CCccccccccCCCCCCceecCC--C---------------
Confidence 0112334455543 589999999 885 9999993 1
Q ss_pred CcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhhhcCCCCChhhhhhhhccccCCcee
Q 003404 397 LTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDV 476 (823)
Q Consensus 397 v~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~~~p~n~~~~~~~~~~~~w~p~D~ 476 (823)
+.+++||||||.+.|.... +.+ . .++| |+|+
T Consensus 223 ---------------------------------------~~~~i~vW~ds~~~~~s~~-~~~-------~-~~~~-p~di 253 (497)
T 2csx_A 223 ---------------------------------------PEHTIYVWFDALFNYISAL-EDK-------V-EIYW-PADL 253 (497)
T ss_dssp ---------------------------------------EEEEECSHHHHHTHHHHTT-TTT-------H-HHHC-SCSC
T ss_pred ---------------------------------------CCceEEEecccchhhcccC-CCc-------c-hhhC-CceE
Confidence 0146789999988776544 111 1 1455 9999
Q ss_pred eecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhh
Q 003404 477 YVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEK 556 (823)
Q Consensus 477 ~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 556 (823)
|++|+||+.+|.+ ||++.+..+|. +||+++++||||+.+
T Consensus 254 ~~~G~D~~~~H~~---~~~a~l~~~g~----~~~~~~~~~G~v~~~---------------------------------- 292 (497)
T 2csx_A 254 HLVGKDILRFHTV---YWPAFLMSLGY----ELPKKVFAHGWWTVE---------------------------------- 292 (497)
T ss_dssp EEEEGGGHHHHHT---HHHHHHHHHTC----CCCSCEEEECCEESS----------------------------------
T ss_pred EEeecchhHhHHH---HHHHHHHHcCC----CCCcEEEECcEEEeC----------------------------------
Confidence 9999999999965 68888877763 789999999999742
Q ss_pred hcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHH-------
Q 003404 557 VMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR------- 629 (823)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~------- 629 (823)
|+|||||+||+|+|.+++++||+|++|||+++.++++++.+|+++.+.+..+
T Consensus 293 ---------------------G~KMSKS~GN~i~~~dli~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l 351 (497)
T 2csx_A 293 ---------------------GKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEI 351 (497)
T ss_dssp ---------------------SSBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCC
T ss_pred ---------------------CceeCCcCCCCCCHHHHHHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999878999999999998877543
Q ss_pred --HHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcccc-----
Q 003404 630 --FLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK----- 702 (823)
Q Consensus 630 --~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~~----- 702 (823)
+++|++.++.... ++..+ ...+.+++.+++++++++.++|++|+|+.|++.+++|++..|.+..
T Consensus 352 ~n~~~R~~~~~~~~~-------~~~~~--~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~k~~ 422 (497)
T 2csx_A 352 GNLYSRVVNMAHKFL-------GGEVS--GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTSYLNKYVDEKQPW 422 (497)
T ss_dssp HHHHHHHHHHHHHHS-------TTCBC--CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhc-------CCCCC--chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 4667666653211 11111 3457788999999999999999999999999999999987765310
Q ss_pred ----------------chHHHHHHHHHHhCccchhhHHHHHHHcCCC
Q 003404 703 ----------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS 733 (823)
Q Consensus 703 ----------------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~ 733 (823)
...++++.+++||+|||||+|||||+.|+.+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 469 (497)
T 2csx_A 423 ALNKERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEK 469 (497)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCS
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCCC
Confidence 1236788889999999999999999999865
No 13
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=1.4e-65 Score=599.37 Aligned_cols=411 Identities=20% Similarity=0.311 Sum_probs=331.2
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+||+|+|++|+|+||+||+++|.+.|++|++++.++++.++++|++||+++| .+++|++|+|.+.+|++|.+|+++|
T Consensus 61 ~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G 138 (564)
T 3kfl_A 61 VKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDMN--YFIRTTNPTHEKLVQDIWKKLAAKG 138 (564)
T ss_dssp HHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHHT
T ss_pred HcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC--ccccCCCHHHHHHHHHHHHHHHHCC
Confidence 57999999999999999999999999999999999999999999999999999 6899999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccccC------cc---ccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCChHHHHHH
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVDG------VS---ERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEM 151 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~g------~~---~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~wp~~v~~~ 151 (823)
+||++...++|||.|+|+|++.|+++| .| .+||.+++.+..+||||++++|+++|++.++.
T Consensus 139 ~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~---------- 208 (564)
T 3kfl_A 139 DIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHD---------- 208 (564)
T ss_dssp CEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHH----------
T ss_pred CEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHh----------
Confidence 999999999999999999999999755 23 25799999999999999999999998763210
Q ss_pred HHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhh
Q 003404 152 QRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLE 231 (823)
Q Consensus 152 q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (823)
+|+
T Consensus 209 -----------------------------------------------~~~------------------------------ 211 (564)
T 3kfl_A 209 -----------------------------------------------HPN------------------------------ 211 (564)
T ss_dssp -----------------------------------------------CTT------------------------------
T ss_pred -----------------------------------------------CCC------------------------------
Confidence 000
Q ss_pred hhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCccccc
Q 003404 232 RTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEK 311 (823)
Q Consensus 232 ~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~ 311 (823)
. +-
T Consensus 212 ----------------~--------------------------------------------------i~----------- 214 (564)
T 3kfl_A 212 ----------------C--------------------------------------------------IV----------- 214 (564)
T ss_dssp ----------------S--------------------------------------------------EE-----------
T ss_pred ----------------c--------------------------------------------------cC-----------
Confidence 0 00
Q ss_pred cccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeee----ccccCCcccEEEeCCCCce
Q 003404 312 AYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFAR----QRYWGEPIPVVFLDGTGET 387 (823)
Q Consensus 312 ~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISR----Qr~WG~PIPi~~~~~~~~~ 387 (823)
....++.+.+|+.+ +|+|||||| |++||+|||. +
T Consensus 215 ------------------------P~~~~~~~~~wl~~----------gl~D~~ISR~~~~~~~WGipiP~----~---- 252 (564)
T 3kfl_A 215 ------------------------PEFRRREVIKTVEK----------GLFDLSISRKRESVMNWSIPVPG----D---- 252 (564)
T ss_dssp ------------------------SHHHHHHHHHHHHH----------CCCCEECEEEGGGGTTCSCEETT----E----
T ss_pred ------------------------CHHHHHHHHHHHhC----------CCCCccccCcCCCCCCCCeecCC----C----
Confidence 01134566778875 689999999 7899999992 1
Q ss_pred eeCCCCccCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhh-hcC-CCCChhh-hh
Q 003404 388 VPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLR-FMD-PKNSKEL-VD 464 (823)
Q Consensus 388 ~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~-~~~-p~n~~~~-~~ 464 (823)
+.+||||||||++.|+. .++ |...... ..
T Consensus 253 ------------------------------------------------~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~ 284 (564)
T 3kfl_A 253 ------------------------------------------------ERHCIYVWLDALFNYYTGALTRVATDGTETLD 284 (564)
T ss_dssp ------------------------------------------------EEEEECHHHHHHTHHHHHHHEEECTTSCEEEC
T ss_pred ------------------------------------------------CCCEEEEeccCcHHHHHHhCccccccccccch
Confidence 12589999999877765 333 4332110 00
Q ss_pred hhh-ccccCCceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCc
Q 003404 465 KTK-ERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDT 543 (823)
Q Consensus 465 ~~~-~~~w~p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~ 543 (823)
.+. .+.|+|+|+|+.|+||+.||++ ||+++|..+|+ .|+++|++||||..
T Consensus 285 ~~~~~~~~wp~dv~~~GkDii~FH~~---~wpa~L~a~g~----~~~~~v~~hg~v~~---------------------- 335 (564)
T 3kfl_A 285 EDHHALNRWPADVHVVGKDILKFHAI---YWPAFLMSAEL----PLPERLVSHGWWTK---------------------- 335 (564)
T ss_dssp SSSTTTTCCSCSEEEEEGGGHHHHHT---HHHHHHHHTTC----CCCSCEEEECCEEE----------------------
T ss_pred hcchhhhcCccceEEEeecccchHHH---HHHHHHHhCCC----CCCcEEEEcccEee----------------------
Confidence 001 0334599999999999999966 59999998875 68899999999842
Q ss_pred cccccccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccc
Q 003404 544 LGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSG 623 (823)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~ 623 (823)
+|+|||||+||+|+|.+++++||+|++|||+++..+.++|.+|+++.
T Consensus 336 ---------------------------------~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~ 382 (564)
T 3kfl_A 336 ---------------------------------DHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKN 382 (564)
T ss_dssp ---------------------------------TTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHH
T ss_pred ---------------------------------CCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHH
Confidence 38999999999999999999999999999999878999999999998
Q ss_pred hHHHHH--HHHHHHHHH---HcCCCCCCCCCCCccC---CCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 003404 624 IEGVHR--FLGRMWRLI---VGSSLPDGTFKGGTVV---NDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFIN 695 (823)
Q Consensus 624 i~~~~~--~l~r~~~~~---~~~~~~~~~~~~~~~~---~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~ 695 (823)
+.+..| ++++++|++ ..... ..++.++ .....|.+++.+++++++++.++|++|+|++|++.+++|++
T Consensus 383 ~~~~~n~~l~~~l~N~~~R~~~~~~----~~~g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~ 458 (564)
T 3kfl_A 383 MVARLNGELADTLGNLVSRCVAPKI----NVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLR 458 (564)
T ss_dssp HHHHHHHTTTTTHHHHHHHHHCTTT----STTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----hcCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 877543 444444433 22211 1122222 12346888999999999999999999999999999999998
Q ss_pred HHhcc-------cc-------------chHHHHHHHHHHhCccchhhHHHHHHHcCCC
Q 003404 696 AAYKW-------EK-------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS 733 (823)
Q Consensus 696 ~~~~~-------~~-------------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~ 733 (823)
..|+| .. ...++++.+++||+|||||+||+||++||.+
T Consensus 459 ~~n~Y~~~~kpW~l~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~ 516 (564)
T 3kfl_A 459 SLNAYVTENAPWKLVKMDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVP 516 (564)
T ss_dssp HHHHHHHHHCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCC
Confidence 77763 11 1236788999999999999999999999865
No 14
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=1.3e-64 Score=589.70 Aligned_cols=406 Identities=22% Similarity=0.363 Sum_probs=320.6
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+||+|.|++|||+||+||+++|.+.|++|++++.++++.++++|++||+++| .+++|++++|.+.++++|.+|+++|
T Consensus 60 ~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G 137 (536)
T 4dlp_A 60 LNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVLNSSND--DYIRTSEERHYKASQAIWQAMVANG 137 (536)
T ss_dssp HTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTT
T ss_pred hcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC--cceeCCCHHHHHHHHHHHHHHHHCC
Confidence 58999999999999999999999999999999999999999999999999998 7899999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccccC----ccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCChHHHHHHHHhhh
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVDG----VSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWI 156 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~g----~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~wp~~v~~~q~~wi 156 (823)
+||++..+++|||.|+++|+++|++.| +|++||.+++.+..+||||++++|+++|++.++.- .+|
T Consensus 138 ~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~----------~~~- 206 (536)
T 4dlp_A 138 DIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENN----------PGF- 206 (536)
T ss_dssp CEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHC----------TTS-
T ss_pred CEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEeccceEEecHHHHHHHHHHHHhC----------CCc-
Confidence 999999999999999999999999743 58999999999999999999999999986632110 000
Q ss_pred cccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhh
Q 003404 157 GRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQ 236 (823)
Q Consensus 157 g~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (823)
T Consensus 207 -------------------------------------------------------------------------------- 206 (536)
T 4dlp_A 207 -------------------------------------------------------------------------------- 206 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCcccccccccc
Q 003404 237 KEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGE 316 (823)
Q Consensus 237 ~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~~~~~~ 316 (823)
+-|
T Consensus 207 --------------------------------------------------------------i~P--------------- 209 (536)
T 4dlp_A 207 --------------------------------------------------------------IMP--------------- 209 (536)
T ss_dssp --------------------------------------------------------------EES---------------
T ss_pred --------------------------------------------------------------cCc---------------
Confidence 000
Q ss_pred ceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeeccc-cCCcccEEEeCCCCceeeCCCCcc
Q 003404 317 GLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRY-WGEPIPVVFLDGTGETVPLHEAEL 395 (823)
Q Consensus 317 g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr~-WG~PIPi~~~~~~~~~~~v~~~~l 395 (823)
...++.+.+|+.+ +++||||||||. ||+|||. +
T Consensus 210 --------------------~~~~~~~~~~l~~----------~l~D~~ISR~~~~WGipiP~----~------------ 243 (536)
T 4dlp_A 210 --------------------AERRNEIVSFVKS----------GLKDLSISRTTFDWGIPVPG----D------------ 243 (536)
T ss_dssp --------------------HHHHHHHHHHHHT----------CCCCEECEEC--CCSCBCTT----C------------
T ss_pred --------------------HHHHHHHHHHHhc----------CCCccCCccCCCcCCeeCCC----C------------
Confidence 1123455677764 689999999985 9999992 1
Q ss_pred CCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhh-hcCCCCChhhhhhhhccccCCc
Q 003404 396 PLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLR-FMDPKNSKELVDKTKERYWSPV 474 (823)
Q Consensus 396 pv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~-~~~p~n~~~~~~~~~~~~w~p~ 474 (823)
+.+++||||||.+.|+. .++|..... .+.|+|+
T Consensus 244 ----------------------------------------~~~v~yvWfda~~~y~s~~~~~~~~~~------~~~~~p~ 277 (536)
T 4dlp_A 244 ----------------------------------------EKHVMYVWVDALTNYITALGYPDTTDE------RWAYWPA 277 (536)
T ss_dssp ----------------------------------------TTSEECHHHHHHHHHHHTTTTTCTTSG------GGGGCSC
T ss_pred ----------------------------------------CCCceEEeeCCcHHHHHhcCCCCCchH------HHhhCCc
Confidence 12589999999876664 566654322 2445699
Q ss_pred eeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccch
Q 003404 475 DVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPE 554 (823)
Q Consensus 475 D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 554 (823)
|+|+.|+||+.||.+ ||+++|..+|+ .||+++++||||+.
T Consensus 278 dv~~~G~D~~~fh~~---~~~a~l~a~g~----~~~~~v~~hg~v~~--------------------------------- 317 (536)
T 4dlp_A 278 NAHIIGKDISRFHAV---YWPAFLMSAQL----PLPKRVFAHGFLFN--------------------------------- 317 (536)
T ss_dssp SEEEEEGGGHHHHHT---HHHHHHHHTTC----CCCSCEEEECCEEC---------------------------------
T ss_pred ceEEeechHHHHHHH---HHHHHHHHCCC----CCCcEEEeeeeEee---------------------------------
Confidence 999999999999965 59898888774 68899999999974
Q ss_pred hhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHH------
Q 003404 555 EKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVH------ 628 (823)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~------ 628 (823)
+|+|||||+||+|+|.+++++||+|++|||+++..+.++|.+|+++.+.+..
T Consensus 318 ----------------------~G~KMSKS~GNvi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~ 375 (536)
T 4dlp_A 318 ----------------------RGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLAN 375 (536)
T ss_dssp ----------------------------------CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCC
T ss_pred ----------------------CCceecccCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 2899999999999999999999999999999987889999999988886543
Q ss_pred ---HHHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcccc---
Q 003404 629 ---RFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK--- 702 (823)
Q Consensus 629 ---~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~~--- 702 (823)
|+++|+.+++..+. ....+. .......|.+++.+++++++.+.++|++|+|+.|++.+++|++..|.|..
T Consensus 376 ~l~N~~~R~~~~~~~~~---~~~~p~-~~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~Y~~~~k 451 (536)
T 4dlp_A 376 DLGNLAQRSLSMIAKNC---EGKVPQ-PGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQE 451 (536)
T ss_dssp CCHHHHHHHHHHHHHHS---TTBCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhc---CCCCCC-cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45556666654321 011010 11224568899999999999999999999999999999999977765311
Q ss_pred -----------------chHHHHHHHHHHhCccchhhHHHHHHHcCCCC
Q 003404 703 -----------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHSN 734 (823)
Q Consensus 703 -----------------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~~ 734 (823)
...++++.+++||+|||||+||+||++||.+.
T Consensus 452 ~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~~~ 500 (536)
T 4dlp_A 452 PWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVPA 500 (536)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTCCT
T ss_pred chhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCCc
Confidence 12267888899999999999999999998653
No 15
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=1.9e-64 Score=591.20 Aligned_cols=416 Identities=19% Similarity=0.246 Sum_probs=328.8
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+||+|+|++|||+||+|||++|.+.|++|++++.++++.++++|++||+++| ++++|+++.|.+.++++|.+|+++|
T Consensus 53 ~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G 130 (560)
T 3h99_A 53 MRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENG 130 (560)
T ss_dssp HTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCS--EEEESSSHHHHHHHHHHHHHHHHTT
T ss_pred HcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHcCCCCC--CceeCCCHHHHHHHHHHHHHHHHCC
Confidence 68999999999999999999999999999999999999999999999999877 7999999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccc-----------------------------cCccccCCCCeEEeccchhhhhHhhh
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVV-----------------------------DGVSERGGHPVIRKPMRQWMLKITEY 131 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~-----------------------------~g~~~~~~~~v~~~~~~qw~~~it~y 131 (823)
+||++...|+|||.|+|+|++.+|+ +++|++||.+++.+...||||++++|
T Consensus 131 ~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~ 210 (560)
T 3h99_A 131 FIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSF 210 (560)
T ss_dssp CEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGG
T ss_pred CEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHH
Confidence 9999999999999999999998875 22455667789999999999999999
Q ss_pred HHHhhccCCCCCChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccc
Q 003404 132 ADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVST 211 (823)
Q Consensus 132 ~~~l~~~l~~l~wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~ 211 (823)
+++|++.+++-.||+.+
T Consensus 211 ~~~l~~~~~~~~~~~~~--------------------------------------------------------------- 227 (560)
T 3h99_A 211 SEMLQAWTRSGALQEQV--------------------------------------------------------------- 227 (560)
T ss_dssp HHHHHHHHHTSCSCHHH---------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCCHHH---------------------------------------------------------------
Confidence 99987654332233322
Q ss_pred cchHHHHHHHHHHhccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHc
Q 003404 212 TQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKF 291 (823)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~ 291 (823)
T Consensus 228 -------------------------------------------------------------------------------- 227 (560)
T 3h99_A 228 -------------------------------------------------------------------------------- 227 (560)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeeeccCCCCCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeecc-
Q 003404 292 DISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQR- 370 (823)
Q Consensus 292 ~l~~~~vv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr- 370 (823)
++.+.+|+.+ +++|||||||+
T Consensus 228 ------------------------------------------------~~~~~~~l~~----------~l~D~~IsR~~~ 249 (560)
T 3h99_A 228 ------------------------------------------------ANKMQEWFES----------GLQQWDISRDAP 249 (560)
T ss_dssp ------------------------------------------------HHHHHHHHHH----------CCCCEECEEESS
T ss_pred ------------------------------------------------HHHHHHHHhc----------CCCCCCccccCC
Confidence 3334455554 58999999999
Q ss_pred ccCCcccEEEeCCCCceeeCCCCccCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhh
Q 003404 371 YWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYY 450 (823)
Q Consensus 371 ~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~y 450 (823)
+||+|||. ++ ..|+|||||+...|
T Consensus 250 ~WG~~iP~----~~----------------------------------------------------~~viyvW~da~~~y 273 (560)
T 3h99_A 250 YFGFEIPN----AP----------------------------------------------------GKYFYVWLDAPIGL 273 (560)
T ss_dssp CSSCBCTT----CT----------------------------------------------------TEEECHHHHHHHHH
T ss_pred cCCeeCCC----CC----------------------------------------------------CceEEeCcccchhH
Confidence 89999992 21 14789999998777
Q ss_pred hhhc--CCCCChhhhhhhhccccCCce-----eeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccc
Q 003404 451 LRFM--DPKNSKELVDKTKERYWSPVD-----VYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEM 523 (823)
Q Consensus 451 l~~~--~p~n~~~~~~~~~~~~w~p~D-----~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~ 523 (823)
+... ++.... +....+.|+|.| +++.|+||+.+|.+ ||+++|..+|+ ..| +++++||||+.+
T Consensus 274 ~s~~~~~~~~~~---~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~---~~~a~l~~~g~---~~p-~~v~~hg~v~~~- 342 (560)
T 3h99_A 274 MGSFKNLCDKRG---DSVSFDEYWKKDSTAELYHFIGKDIVYFLSL---FWPAMLEGSNF---RKP-SNLFVHGYVTVN- 342 (560)
T ss_dssp HHHHHHHHHHHT---CSSHHHHHHBTTCCSEEEEEEEGGGHHHHHT---HHHHHHHHTTB---CCC-SEEEEECCEEET-
T ss_pred HHHHHHHhhccC---ChhhHHHhCcCCCCceeEEEeccccchhHHH---HHHHHHHhCCC---CCC-cEEEEEeEEEeC-
Confidence 5422 111000 001123455888 99999999999955 69999999886 567 999999999742
Q ss_pred eeeEEecCCCccccCCCCCccccccccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchh
Q 003404 524 QYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSL 603 (823)
Q Consensus 524 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~l 603 (823)
|+|||||+||+|+|.+++++||+|++
T Consensus 343 ------------------------------------------------------G~KMSKS~GNvv~p~d~i~~~GaDal 368 (560)
T 3h99_A 343 ------------------------------------------------------GAKMSKSRGTFIKASTWLNHFDADSL 368 (560)
T ss_dssp ------------------------------------------------------TEECCTTTTCCCBHHHHHHHSCHHHH
T ss_pred ------------------------------------------------------CeeccccCCCcCCHHHHHHHcCcHHH
Confidence 89999999999999999999999999
Q ss_pred eeeeeecCCcc-CCccccccchHHHH--HHHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhc
Q 003404 604 RLYEMFMGPFR-DSKTWNTSGIEGVH--RFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEG 680 (823)
Q Consensus 604 Rl~ll~~~~~~-~d~~~s~~~i~~~~--~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~ 680 (823)
||||++.++.+ +|++|+++.+.... ++++++++++.+......+..++..+ ....|.+++.+++++++.++++|++
T Consensus 369 R~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~-~~~~d~~ll~~l~~~~~~v~~~~e~ 447 (560)
T 3h99_A 369 RYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLA-SELADPQLYKTFTDAAEVIGEAWES 447 (560)
T ss_dssp HHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHHTTHHHHHHHSTTBCC-SSCSCHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CccccHHHHHHHHHHHHHHHHHHHc
Confidence 99999888876 89999988876532 23333333321100000000111111 1346889999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHhccc-------c---------------chHHHHHHHHHHhCccchhhHHHHHHHcCCCCCccc
Q 003404 681 TRFNTGISAMMEFINAAYKWE-------K---------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAY 738 (823)
Q Consensus 681 ~~f~~ai~~l~~~~~~~~~~~-------~---------------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~~sv~~ 738 (823)
|+|+.|++.+++|++..|.|. . ...++++.+++||+|||||+||+||++||.+
T Consensus 448 ~~~~~a~~~l~~l~~~~n~Yi~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~----- 522 (560)
T 3h99_A 448 REFGKAVREIMALADLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE----- 522 (560)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC-----
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCchhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCCC-----
Confidence 999999999999998776631 0 0137889999999999999999999999854
Q ss_pred cCCCCCCc
Q 003404 739 ESFPKANP 746 (823)
Q Consensus 739 ~~WP~~~e 746 (823)
+.||.+++
T Consensus 523 ~~w~~~~~ 530 (560)
T 3h99_A 523 LTWDGIQQ 530 (560)
T ss_dssp CCTGGGGS
T ss_pred CChhhhhc
Confidence 68998754
No 16
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=100.00 E-value=2e-39 Score=330.03 Aligned_cols=197 Identities=49% Similarity=0.840 Sum_probs=159.8
Q ss_pred cccCCeEEEEEeecCCCC----------------CcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccch------
Q 003404 157 GRSEGAEMDFRVLDSDGQ----------------ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQS------ 214 (823)
Q Consensus 157 g~s~~~~~~f~~~~~~~~----------------~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~------ 214 (823)
|||+|++|+|++.+.+.. ....+++||||||||||||+||||+|+|+|+..+...+..
T Consensus 1 gkS~G~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~~~~~~~~~~ 80 (219)
T 3o0a_A 1 GRSEGALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACY 80 (219)
T ss_dssp ---CCEEEEEEEECSCGGGTGGGSCHHHHHHHHHHSEEEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHHHHHTTCCCH
T ss_pred CceeEEEEEEEecCCccccccccccchhhhhcccCCCCEEEEEECCcchhhcccEEEECCCCcEEEEEecCCccccchhH
Confidence 899999999999643200 0126899999999999999999999999999887654433
Q ss_pred HHHHHHHHHHhccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCc
Q 003404 215 QNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDIS 294 (823)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~ 294 (823)
...++|+..+......++... ..+.|.|+|++++||++++.+|||.++||++++|||+||+|||||++||+||++||||
T Consensus 81 ~~~~~~i~~~~~~~~~~~~~~-~~~~G~l~G~~~~~Pl~~~~iPI~~adyV~~~~GTGaV~~aPaHd~~D~~~~~k~~Lp 159 (219)
T 3o0a_A 81 SDVENFVEKMKKMSTRERTME-EDKEGVFLGVYATNPANGEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLP 159 (219)
T ss_dssp HHHHHHHHHHHTCCHHHHHSC-SSCCEEEEEEEEECTTTCCEEEEEEETTSCTTSTTSEEEECTTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhccccceeE-EEeeeEEcCCEEECCCCCCeeeEEEecccccCCCCCeEEECCCCCHHHHHHHHHcCCC
Confidence 456778888877777666544 4556679999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCCCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeec
Q 003404 295 IHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKL 361 (823)
Q Consensus 295 ~~~vv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l 361 (823)
++++|++.+ ......+.|+++|+++++.. ++||...+|++.|+++|++.|.+.+.++|||
T Consensus 160 i~~vi~~~~-~~~~~~g~ft~~g~~~~~~~------~~Gl~~~eA~~~Ii~~L~~~g~l~~~~~yrL 219 (219)
T 3o0a_A 160 IKVVVKPEG-AWDFEKGAYEGKGTLVNSDG------FDGLDSETAKRKITEWLQDRGLGEKKVSYRL 219 (219)
T ss_dssp CCCCEECSS-CCCTTTCCCCSCCEECSCGG------GTTCBHHHHHHHHHHHHHHTTSEEEC-----
T ss_pred ceeeeCCcc-ccccccccccccceEecCCC------CCCCCHHHHHHHHHHHHHHCCCeeeeeeecC
Confidence 999998753 22223568899999987764 9999999999999999999999999999876
No 17
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=100.00 E-value=9.1e-37 Score=306.96 Aligned_cols=185 Identities=41% Similarity=0.670 Sum_probs=156.9
Q ss_pred cCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhhhc
Q 003404 159 SEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKE 238 (823)
Q Consensus 159 s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (823)
.+|++|+|++.+ .+.+|+||||||||||||+||||+|+|+|+..... ....+++|+..+..++..++..+...
T Consensus 10 ~~g~~v~F~~~~-----~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (196)
T 2ajg_A 10 GEGVEITFNVND-----YDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAE--NNPELAAFIDECRNTKVAEAEMATME 82 (196)
T ss_dssp -CEEEEEEEBTT-----CSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHT--TCHHHHHHHHHHHHCCCCGGGGGGSC
T ss_pred CceEEEEEEeCC-----CCcEEEEEECChhhhcCccEEEECCCCcEEEEEcC--CHHHHHHHHHHhhcccccceEEEeee
Confidence 478999999953 24789999999999999999999999999877532 34567788887776666666666677
Q ss_pred ccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCcc-ccccccccc
Q 003404 239 KTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQ-SEKAYTGEG 317 (823)
Q Consensus 239 ~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~-~~~~~~~~g 317 (823)
++|.|.|+++.||++++++|||.++||++++|||+||+|||||++||+||++||||++++|++.++...+ ..+.|+++|
T Consensus 83 k~g~l~G~~~~~P~~~~~ipV~~ad~V~~~~GTG~V~~aPah~~~D~~~~~k~~L~i~~vI~~~~g~~~d~~~g~y~~~g 162 (196)
T 2ajg_A 83 KKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKG 162 (196)
T ss_dssp CCEEEEEEEEECTTTCCEEEEEEETTCCSSSSCSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSSCCCCSSSCCCSCC
T ss_pred eCCEEcCCEEECCCCCCeeEEEEeCCCccCCCCceEEECCCCCHHHHHHHHHcCCCceeEEeCCcCcccccccccccCCc
Confidence 8899999999999999999999999999999999999999999999999999999999999854332212 356788888
Q ss_pred eEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCcee
Q 003404 318 LIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK 356 (823)
Q Consensus 318 ~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~ 356 (823)
.++|+.. ++||..++|++.|+++|++.|.+.++
T Consensus 163 ~~~ns~~------~~Gl~v~eA~~~Ii~~L~~~g~~~~~ 195 (196)
T 2ajg_A 163 VLFNSGE------FNGLDHEAAFNAIADKLTAMGVGERK 195 (196)
T ss_dssp CBCSSGG------GTTCCHHHHHHHHHHHHHHTTSEEEE
T ss_pred eEecCcc------cCCeEHHHHHHHHHHHHHHCCCceee
Confidence 8887754 99999999999999999999987664
No 18
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.1e-35 Score=334.17 Aligned_cols=145 Identities=21% Similarity=0.299 Sum_probs=109.7
Q ss_pred CCceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCcccccccc-ceEeccceeeEEecCCCccccCCCCCcccccccc
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQ-GIILGEMQYMVCKDVDGSYISADSTDTLGEYEQE 550 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~-G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 550 (823)
.|+|+|++|+||+.+|..|.. ..+... ...+||.+++.| |||+.
T Consensus 243 ~~~di~~~G~D~~~~H~~~~~---a~~~a~---~g~~~~~~~~~h~g~v~~----------------------------- 287 (414)
T 3c8z_A 243 TGLDIQGGGSDLIFPHHEYSA---AHAESV---TGERRFARHYVHTGMIGW----------------------------- 287 (414)
T ss_dssp SCEEEEEEEGGGTTTHHHHHH---HHHHHH---HCCSCSEEEEEEECCBC------------------------------
T ss_pred CCceEEEeccccccHHHHHHH---HHHHHh---cCCCCcCeEEEEcCEEec-----------------------------
Confidence 489999999999999987643 333332 124689999998 78763
Q ss_pred ccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHH-hCcchheeeeeecCCccCCccccccchHHHHH
Q 003404 551 SIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 629 (823)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~-yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~ 629 (823)
+|+|||||+||+|+|.+++++ ||+|++|||+++ ++++++++|+++.+.++.+
T Consensus 288 --------------------------~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~ 340 (414)
T 3c8z_A 288 --------------------------DGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFS-GHYREDRFWSNEVLDEANA 340 (414)
T ss_dssp --------------------------------------CBHHHHHHTTCCHHHHHHHHHT-SCTTSCBCCCHHHHHHHHH
T ss_pred --------------------------CCeEcccccCCcCCHHHHhhccCCcchheeEEEe-cCcCCCCCcCHHHHHHHHH
Confidence 389999999999999999999 999999999997 8899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHhc
Q 003404 630 FLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEI-EGTRFNTGISAMMEFINAAYK 699 (823)
Q Consensus 630 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~-e~~~f~~ai~~l~~~~~~~~~ 699 (823)
+++++++++... ++ + .++++++++.++| ++|+|++|+++|++|++.+|+
T Consensus 341 ~l~~l~n~~~~~--------~~--~-----------~~~~~~~~v~~a~~d~~~~~~Al~~i~~~~~~~n~ 390 (414)
T 3c8z_A 341 RLARWRSATALP--------EA--P-----------DATDVIARVRQYLADDLDTPKALAALDGWCTDALS 390 (414)
T ss_dssp HHHHHHHHHTSS--------CB--S-----------CCHHHHHHHHHHHHBTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--------cc--h-----------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 999999987321 11 0 1256788999999 789999999999999999987
No 19
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=100.00 E-value=3.3e-34 Score=285.93 Aligned_cols=178 Identities=19% Similarity=0.194 Sum_probs=138.1
Q ss_pred ccCCeEEEEEeecCCC-CCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhh
Q 003404 158 RSEGAEMDFRVLDSDG-QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQ 236 (823)
Q Consensus 158 ~s~~~~~~f~~~~~~~-~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (823)
+|+|++|+|++.+... ...+.+++||||||||||||+|+||||+|+|+...+..+.....++++...... +. ..+.
T Consensus 2 ~S~~i~V~F~~~~~~~~~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~~~~~i~a~~~~~~~~~~-~~--~~~~ 78 (186)
T 1wny_A 2 QDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGE-GT--PVLK 78 (186)
T ss_dssp -CCEEEEEEEBSCGGGGTCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETTEEEEEEHHHHHHHHCT-TS--CEEE
T ss_pred ccceEEEEEEeCCCccccCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeCCcchHHHHHHHHHHhhc-Cc--EEEE
Confidence 6899999999964210 012478999999999999999999999999988765422222224455444332 22 1233
Q ss_pred hcccceecceEEecCCC---CCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCccccccc
Q 003404 237 KEKTGVFSGCYARNPAS---GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAY 313 (823)
Q Consensus 237 ~~~~~~~~g~~~~~P~~---~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~~~ 313 (823)
..+|..|.|+++.||++ ++.+|||.++||++++|||+||+|||||++||+||++||||++++|+++ |+
T Consensus 79 ~~~G~~l~g~~~~~P~~~~~~~~ipi~~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~L~i~~~id~~-G~-------- 149 (186)
T 1wny_A 79 TFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEE-GK-------- 149 (186)
T ss_dssp EEEHHHHTTCBBCCSSCCCCSSCCBEEECTTCCSSSSCSCEEECGGGCHHHHHHHHHHTCCCCCCBCTT-SB--------
T ss_pred EEEcccccCcEEECCccccCCCEEEEEEeCcCcCCCCcccEEEcCCCCHHHHHHHHHcCCceEeeeCCC-cc--------
Confidence 44555699999999997 8999999999999999999999999999999999999999999999875 32
Q ss_pred cccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEee
Q 003404 314 TGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNY 359 (823)
Q Consensus 314 ~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~ 359 (823)
+..+ . ++||...+|++.|+++|++.|.+.+..++
T Consensus 150 -----~~~~------~-~~Gl~v~~A~~~Ii~~L~~~g~l~~~~~~ 183 (186)
T 1wny_A 150 -----LLVE------P-FKGLYFREANRAILRDLRGRGLLFKEESY 183 (186)
T ss_dssp -----BCST------T-CTTCBHHHHHHHHHHHHHHTTCEEEEEC-
T ss_pred -----CccC------C-CCCcCHHHHHHHHHHHHHHCCCeecceeE
Confidence 2221 1 78899999999999999999987766554
No 20
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=8.5e-34 Score=319.17 Aligned_cols=92 Identities=16% Similarity=0.066 Sum_probs=70.1
Q ss_pred CCCCcccccc---------cC-CccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHH
Q 003404 1 MQGYNVLHPM---------GW-DAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQ 70 (823)
Q Consensus 1 m~G~~V~~~~---------Gw-D~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~ 70 (823)
|+||+|.|++ || ||||.||+++|.+.|++|++++.++++.|+++|++||+++|| +.|.+++|...++
T Consensus 76 ~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~~~~f~~d~~~Lgi~~d~---~~~~~t~hi~~v~ 152 (501)
T 3sp1_A 76 FLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFNDCRKLNIVYPD---KVLVASKHIPIMI 152 (501)
T ss_dssp HHTCCEEEEEEEBCSCCC-------------------CCHHHHHHHHHHHHHHHHHHTTCCCCS---EEEEGGGCHHHHH
T ss_pred HcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCC---cccCcchHHHHHH
Confidence 5799999995 55 999999999999999999999999999999999999999997 3356899999999
Q ss_pred HHHHHHHHcCcEEEcceeeeccCCC
Q 003404 71 WIFLQLLKRGLAYQAEVPVNWCPAL 95 (823)
Q Consensus 71 ~~F~~L~~~gliy~~~~~v~w~p~~ 95 (823)
++|.+|+++|+||++...|+||+.+
T Consensus 153 ~~i~~L~~kG~aY~~~g~Vyf~v~~ 177 (501)
T 3sp1_A 153 EVVKILEEKKITYFSNGNVYFDTSC 177 (501)
T ss_dssp HHHHHHHHTTCEEEETTEEEECGGG
T ss_pred HHHHHHHHCCCEEEeCCcEEecCCc
Confidence 9999999999999999999999977
No 21
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.97 E-value=4.8e-32 Score=303.90 Aligned_cols=93 Identities=19% Similarity=0.087 Sum_probs=87.1
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+||+|.|++|||+||.||+.+|.+.|++|++++.++++.|++++++||+++||..+..| +|...++++|.+|+++|
T Consensus 59 ~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~LgI~~d~~~praT---e~i~~i~~~i~~L~ekG 135 (462)
T 3tqo_A 59 MRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSPDQEPRAT---QYVPEIIKLIQKLLDNQ 135 (462)
T ss_dssp HTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGG---GCHHHHHHHHHHHHHHT
T ss_pred HcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCccccChh---hHHHHHHHHHHHHHHCC
Confidence 589999999999999999999999999999999999999999999999999998655444 89999999999999999
Q ss_pred cEEEc-ceeeeccCCCC
Q 003404 81 LAYQA-EVPVNWCPALG 96 (823)
Q Consensus 81 liy~~-~~~v~w~p~~~ 96 (823)
++|++ ...|+||+.+-
T Consensus 136 ~aY~~~~g~Vyfdv~~~ 152 (462)
T 3tqo_A 136 YAYTGQNGDVFFDVRRF 152 (462)
T ss_dssp SEEECTTSCEEECTTTC
T ss_pred CEEEecCCcEEeccccc
Confidence 99999 78999999874
No 22
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=99.97 E-value=1.6e-31 Score=255.56 Aligned_cols=143 Identities=27% Similarity=0.364 Sum_probs=121.9
Q ss_pred cCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhhhc
Q 003404 159 SEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKE 238 (823)
Q Consensus 159 s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (823)
+..++|+|++ +. +.+++||||||||||||+||||||+|+..
T Consensus 4 ~~~~~v~F~~-~~-----~~~l~i~TTrP~Tl~g~~aiav~P~~~~~--------------------------------- 44 (147)
T 1wka_A 4 GKLYTLRYEV-EG-----GGFIEIATVRPETVFADQAIAVHPEDERY--------------------------------- 44 (147)
T ss_dssp CEEEEEEEEB-TT-----SCEEEEEESCGGGGGGCCEEEECTTCTTT---------------------------------
T ss_pred ceEEEEEEEC-CC-----CcEEEEEECCceecccceEEEECCCCchH---------------------------------
Confidence 5678999999 32 46899999999999999999999998641
Q ss_pred ccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCccccccccccce
Q 003404 239 KTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGL 318 (823)
Q Consensus 239 ~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~~~~~~g~ 318 (823)
..|.|+++.||++++++|||.++||++++|||+||+|||||++||++|++||||++++|+++ | +
T Consensus 45 --~~l~g~~~~~P~~~~~ipI~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~id~~-G-------------~ 108 (147)
T 1wka_A 45 --RHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLE-G-------------R 108 (147)
T ss_dssp --GGGTTCEEECTTSSCEEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCSBCTT-S-------------B
T ss_pred --HHhcCCEEECCCCCCeeEEEEeCccccCCCCCcEEEccCCCHHHHHHHHHcCCCcceEECCC-C-------------E
Confidence 13689999999999999999999999999999999999999999999999999999999876 3 3
Q ss_pred EecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEee
Q 003404 319 IVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNY 359 (823)
Q Consensus 319 ~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~ 359 (823)
+ ++.. ....++|+...+|++.|+++|++.|.+.+..+|
T Consensus 109 ~-~~~~--~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 109 M-EGER--VPEALRGLDRFEARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp B-CSTT--SCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred E-cCCC--cccccCCcCHHHHHHHHHHHHHHCCCeeeeeEc
Confidence 3 2210 001289999999999999999999988776654
No 23
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=264.47 Aligned_cols=184 Identities=18% Similarity=0.287 Sum_probs=130.0
Q ss_pred EEEEEeecCCCC------CcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccc-----hHHHH--HHHHHHhccCh
Q 003404 163 EMDFRVLDSDGQ------ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ-----SQNIE--EYKNLASRKSD 229 (823)
Q Consensus 163 ~~~f~~~~~~~~------~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~ 229 (823)
-|+|++...... ..+.+|+||||||||||||+|+||||+|+|+......+. ....+ .|...+....+
T Consensus 9 ~ikf~v~~~~~~~~~~~~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~ 88 (252)
T 2wfd_A 9 LLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDNGV 88 (252)
T ss_dssp EEEEEEESSCCGGGGGGTTSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECTTSCEEEECHHHHHHHHTTTSSSSTTC
T ss_pred EEEEEccCcchhhhhhccCCCCEEEEEECChHHHhhhheEEECCCCcEEEEEecCCcEEEEhhhhHHHHHHHHhhccCcc
Confidence 478887542210 235799999999999999999999999999875432111 01111 11111111112
Q ss_pred hhhhhhhhcccceecceEEecCCCC-CeecEEEeCccccCCCCceEEecCCCChhhHH----------HHHHcCCc----
Q 003404 230 LERTELQKEKTGVFSGCYARNPASG-EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHE----------FALKFDIS---- 294 (823)
Q Consensus 230 ~~~~~~~~~~~~~~~g~~~~~P~~~-~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~----------~~~~~~l~---- 294 (823)
.+ .+...+|..|+|++++||+++ +.+|||+++||++++|||+||+|||||++||+ ||++||||
T Consensus 89 ~~--~~~~~~G~~l~G~~~~~Pl~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~fa~kygL~~~~~ 166 (252)
T 2wfd_A 89 VP--VVKELMGEEILGASLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMV 166 (252)
T ss_dssp CC--EEEECCHHHHTTCEEECSSCSSSCEEEEECSCCCSSSSCSSEEECTTTCHHHHHHHHHHHHCSHHHHTTTCCGGGT
T ss_pred cE--EEEEEEcccccCCEEEcCCCCCceeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHhhhccchhHHHHcCCCchhc
Confidence 11 123344555999999999999 58999999999999999999999999999999 68999998
Q ss_pred ----eeeeccCCC-CCCc--------------c-------ccccccc---cceEecccCcccccccCCCCHHHHHHHHHH
Q 003404 295 ----IHSVVMPDD-ESSS--------------Q-------SEKAYTG---EGLIVNSSNLISGLDINGLSCQEATSKVIE 345 (823)
Q Consensus 295 ----~~~vv~~~~-~~~~--------------~-------~~~~~~~---~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~ 345 (823)
+++||+.++ +.+. + ...+|.+ +|+++ +. +++|+.+++|++.|++
T Consensus 167 ~~~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~-~~------~~~Gl~v~eA~~~Ii~ 239 (252)
T 2wfd_A 167 LPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIML-VD------GFKGQKVQDVKKTIQK 239 (252)
T ss_dssp TTCCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC-ST------TSTTCBHHHHHHHHHH
T ss_pred cccCceeEEecCcccccchhhhhhhccccCcchhhhhhhhhhhhccccccCceEe-ee------ccCCeEHHHHHHHHHH
Confidence 577776542 1110 0 0123443 57887 54 4999999999999999
Q ss_pred HHHHcCCCce
Q 003404 346 WAEKTGNGKK 355 (823)
Q Consensus 346 ~l~~~~~~~~ 355 (823)
+|++.|.+..
T Consensus 240 ~L~~~g~~~~ 249 (252)
T 2wfd_A 240 KMIDAGDALI 249 (252)
T ss_dssp HHHHTTSEEE
T ss_pred HHHHCCCCcc
Confidence 9999887654
No 24
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.96 E-value=1.2e-28 Score=279.68 Aligned_cols=150 Identities=19% Similarity=0.264 Sum_probs=119.7
Q ss_pred CCceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCcccccccc-ceEeccceeeEEecCCCccccCCCCCcccccccc
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQ-GIILGEMQYMVCKDVDGSYISADSTDTLGEYEQE 550 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~-G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 550 (823)
.|.|+|++|+|++.+|.. +|.+.+... ...||.+.+.| |||+.
T Consensus 219 ~~~dih~gG~Dl~fpH~~---~~~aq~~a~----~g~~~~~~~~h~g~v~~----------------------------- 262 (461)
T 1li5_A 219 NHFDIHGGGSDLMFPHHE---NEIAQSTCA----HDGQYVNYWMHSGMVMV----------------------------- 262 (461)
T ss_dssp SSEEEEECBGGGTTTHHH---HHHHHHHHH----SSSCCEEEECCBCCEEE-----------------------------
T ss_pred CCceEEeccCccCchHHH---HHHHHHHHh----cCCCCCcEEEEeeEEEE-----------------------------
Confidence 379999999999877744 455544443 12366665544 88863
Q ss_pred ccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHH
Q 003404 551 SIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRF 630 (823)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~ 630 (823)
+|+|||||+||+|+|.+++++||+|++|||+++ ++++++++|+++.+.++.+.
T Consensus 263 --------------------------~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~-~~~~~~~~fs~~~l~~~~~~ 315 (461)
T 1li5_A 263 --------------------------DREKMSKSLGNFFTVRDVLKYYDAETVRYFLMS-GHYRSQLNYSEENLKQARAA 315 (461)
T ss_dssp --------------------------TTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHS-SCTTSCEEECHHHHHHHHHH
T ss_pred --------------------------CCeEccccCCCccChhHHhhhCCHHHHHHHHHc-CCcCCCCCCCHHHHHHHHHH
Confidence 389999999999999999999999999999996 78999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHhccc
Q 003404 631 LGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEI-EGTRFNTGISAMMEFINAAYKWE 701 (823)
Q Consensus 631 l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~-e~~~f~~ai~~l~~~~~~~~~~~ 701 (823)
++|+++++... ....+ . + .+.++..++.++| ++|+++.|++.|++|++.+|++.
T Consensus 316 l~rl~n~~~~~--------~~~~~---~-d-----~l~~~~~~~~~am~dd~n~~~Al~~l~~l~~~~N~~~ 370 (461)
T 1li5_A 316 LERLYTALRGT--------DKTVA---P-A-----GGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLK 370 (461)
T ss_dssp HHHHHHHHTTC--------CTTSC---C-C-----SCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--------hcCCC---H-H-----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 99999988321 00111 1 2 3667888999999 88999999999999999998763
No 25
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.96 E-value=1.1e-29 Score=265.39 Aligned_cols=174 Identities=18% Similarity=0.260 Sum_probs=125.2
Q ss_pred CcEEEEEcCCcChhhcccEEEECCCCcchhhhcccc-------chHHHHHHHHHHhccChhhhhhhhhcccceecceEEe
Q 003404 177 DIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTT-------QSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYAR 249 (823)
Q Consensus 177 ~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 249 (823)
+.+|+||||||||||||+|+||+|+|+|+...+..+ ....+..|+..+...++. ..+...+|..|.|+++.
T Consensus 32 ~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~L~G~~~~ 109 (261)
T 2wfg_A 32 KVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYY--KPLFTINGKTLIGSRID 109 (261)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCEEEEEECSTTEEEEECHHHHHHHTTTTCSSSTTCC--CCSEEEEHHHHTTCEEE
T ss_pred CCEEEEEECCchHHhhhheEEECCCCceEEEEecCceEEEhHHHHHHHHHHHhhhhccccc--EEEEEEecccccCCEEE
Confidence 478999999999999999999999999987554321 111111222111111111 12233445569999999
Q ss_pred cCCC-CCeecEEEeCccccCCCCceEEecCCCChhhHHHHHH-------cC-------CceeeeccCCC-CCCcc-----
Q 003404 250 NPAS-GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALK-------FD-------ISIHSVVMPDD-ESSSQ----- 308 (823)
Q Consensus 250 ~P~~-~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~-------~~-------l~~~~vv~~~~-~~~~~----- 308 (823)
||++ ++.+|||+++||++++|||+||+|||||++||+||++ || ||++++|++.+ +.+..
T Consensus 110 ~Pl~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~~~L~i~~vId~~~~g~~~~~~~~~ 189 (261)
T 2wfg_A 110 APYAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVN 189 (261)
T ss_dssp CTTCSSCSEEEEECTTCCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTCCGGGCCCCCCCCEEBTTTBTCHHHHHHH
T ss_pred CCCCCCceeEEEeeccccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCCccccccCCceeEEcCcccCccchhhhhc
Confidence 9998 5799999999999999999999999999999999999 99 89999998631 22110
Q ss_pred --------c--------cccccc---cceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEee
Q 003404 309 --------S--------EKAYTG---EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNY 359 (823)
Q Consensus 309 --------~--------~~~~~~---~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~ 359 (823)
. ...|.. .|.|. +. +++|+.+.+|++.|+++|++.|.+....++
T Consensus 190 ~~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~-~g------~f~Gl~v~eA~~~Ii~~L~~~G~~~~~~~~ 252 (261)
T 2wfg_A 190 DLKIQSPKDSVQLANAKELAYKEGFYNGTML-IG------KYKGDKVEDAKPKVKQDLIDEGLAFVYNEP 252 (261)
T ss_dssp HTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC-SS------TTTTSBHHHHHHHHHHHHHHTTSEEEECC-
T ss_pred cccccccchhhhhhhhhhhhhhcccccceEe-cc------ccCCeEHHHHHHHHHHHHHHCCCeeeeeee
Confidence 0 011211 23442 32 499999999999999999999987765544
No 26
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=99.94 E-value=1.3e-27 Score=248.00 Aligned_cols=172 Identities=19% Similarity=0.200 Sum_probs=125.8
Q ss_pred CcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHH-HHHHHHHhccChh------hhhhhhhcccceecceEEe
Q 003404 177 DIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNI-EEYKNLASRKSDL------ERTELQKEKTGVFSGCYAR 249 (823)
Q Consensus 177 ~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~ 249 (823)
+.+++||||||||||||+|+||||+.+|+...+..+....+ ++.+......... .-..+...+|..|.|+++.
T Consensus 79 ~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~~ge~~IvAe~l~e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G~~~~ 158 (311)
T 3pz6_A 79 KVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLLATVR 158 (311)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEETTEEEEEEHHHHHHHHTTTCSSSCCTTCCCEEEEEEHHHHTTCEEE
T ss_pred CEEEEEEECCchhhhhheEEEECCCCcEEEEEECCCCEEEEeHHHHHHHHHhcccccccCCCcEEEEEEEhHHhcCCEEE
Confidence 57899999999999999999999999998766532211111 1222221111100 1122345667789999999
Q ss_pred cCCCCC-eecEEEeCccccCCCCceEEecCCCChhhHH-----------HHHHcCC---------ceeeeccCCC-CCCc
Q 003404 250 NPASGE-AIPIWVADYVLGSYGTGAIMAVPAHDTRDHE-----------FALKFDI---------SIHSVVMPDD-ESSS 307 (823)
Q Consensus 250 ~P~~~~-~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~-----------~~~~~~l---------~~~~vv~~~~-~~~~ 307 (823)
||++++ .+||+.++||++++|||+||+|||||++||. |++|||| +++.||+..+ |.+.
T Consensus 159 hPl~~~~~ipIl~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d~Lk~k~~~~~Kygi~~e~v~~~~e~ipvI~~~g~G~~~ 238 (311)
T 3pz6_A 159 APLSPYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLS 238 (311)
T ss_dssp CTTCSSSCEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHHTTGGGHHHHTTCCHHHHTTTSCCCCCEEBTTTBSSH
T ss_pred CCCCCCCeeEEEecCcCccCCCcceEEeCCCCCHHHHHHHHHHhhccHHHHHHcCCchHHhccCCCeEEEEecCCCCCcc
Confidence 999996 9999999999999999999999999999998 5555885 7788887432 2210
Q ss_pred --------------c-------cccccc-c--cceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCce
Q 003404 308 --------------Q-------SEKAYT-G--EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK 355 (823)
Q Consensus 308 --------------~-------~~~~~~-~--~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~ 355 (823)
+ ...+|. | +|+|+ +. .++|+++++|+..+.++|.+.|.+..
T Consensus 239 A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~-~g------~~~G~~V~eAk~~i~~~L~~~g~a~~ 303 (311)
T 3pz6_A 239 AVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMK-MG------PFAGQSVKDCKQSCRDLLVQNNQCIV 303 (311)
T ss_dssp HHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEEC-SS------TTTTSBHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEe-ee------ccCCeEHHHHHHHHHHHHHHCCCceE
Confidence 0 123565 2 68887 44 38999999999999999999887643
No 27
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.59 E-value=3.1e-15 Score=175.09 Aligned_cols=119 Identities=12% Similarity=0.083 Sum_probs=83.4
Q ss_pred ccccccCCCCccChhHHHHH-------------------------hCcchheeeeeecCCccCCccccccchHHHHH---
Q 003404 578 AHKMSKSRGNVVNPDDVVTE-------------------------YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR--- 629 (823)
Q Consensus 578 G~KMSKS~GNvV~p~~ii~~-------------------------yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~--- 629 (823)
|+|||||+||+|+|.+++++ +|+|++|||+++.. +.++.+|+.+.+....+
T Consensus 392 g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~-~~~~~~Fd~d~~~~~~~~~~ 470 (592)
T 1iq0_A 392 GRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTE-PKKQIDFRYQEALSFEGDTG 470 (592)
T ss_dssp TBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSC-TTSCEEECHHHHHCSSSSSH
T ss_pred CCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcC-CCCCCeecHHHHHHHhccch
Confidence 79999999999999999999 99999999999764 57888999776643211
Q ss_pred -H----HHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccc
Q 003404 630 -F----LGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE 701 (823)
Q Consensus 630 -~----l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~ 701 (823)
+ ..|+..++...... . . + ......+.+.+++..+.++...+.+++++++++.++..+++++...|+|.
T Consensus 471 ~ylqya~aR~~sil~k~~~~-~-~-~-~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~yl~~La~~fn~fy 543 (592)
T 1iq0_A 471 PYVQYAHARAHSILRKAGEW-G-A-P-DLSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYY 543 (592)
T ss_dssp HHHHHHHHHHHHHHHHHCCC-C-C-C-CGGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccc-C-C-C-ccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 3 33444444221100 0 0 0 11111233556778888999999999999999999999999999988853
No 28
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.51 E-value=3e-15 Score=173.04 Aligned_cols=60 Identities=20% Similarity=0.169 Sum_probs=45.5
Q ss_pred ccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCcccccc-chHHHHHHHHHHHHHH
Q 003404 578 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTS-GIEGVHRFLGRMWRLI 638 (823)
Q Consensus 578 G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~-~i~~~~~~l~r~~~~~ 638 (823)
|+|||||+||+|+|.++++.||+|++|+||++. .++++.+|+.+ .+..+.+.+.++++.+
T Consensus 277 g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l~~~-~~~~~~~fs~~~~l~~~~~~~~~~~~~~ 337 (523)
T 1irx_A 277 KGKMSGSKGNVILLSDLYEVLEPGLVRFIYARH-RPNKEIKIDLGLGILNLYDEFEKVERIY 337 (523)
T ss_dssp ---------CCCCHHHHHTTSCHHHHHHHHHSS-CTTSCEEECCSTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCCCceeCcchhHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999964 56788999999 8999988888888755
No 29
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.50 E-value=2e-13 Score=160.29 Aligned_cols=123 Identities=14% Similarity=0.056 Sum_probs=85.9
Q ss_pred ccccccCCC--CccChhHHHHH---------------------------hCcchheeeeeecCCccCCccccccchHH--
Q 003404 578 AHKMSKSRG--NVVNPDDVVTE---------------------------YGADSLRLYEMFMGPFRDSKTWNTSGIEG-- 626 (823)
Q Consensus 578 G~KMSKS~G--NvV~p~~ii~~---------------------------yGaD~lRl~ll~~~~~~~d~~~s~~~i~~-- 626 (823)
|+|||||+| |+|++.+++++ +|+|++||++++.. +..+.+|+.+.+..
T Consensus 422 ~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~~-~~~~~~Fd~d~~~~~~ 500 (629)
T 2zue_A 422 EGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYS-PDKKIIFRWEDVLNFE 500 (629)
T ss_dssp TBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSSC-TTSCEECCHHHHSCCS
T ss_pred CCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhcC-CCCCCeecHHHHHHHh
Confidence 789999999 99999999999 99999999999754 58889998765531
Q ss_pred ------HHHHHHHHHHHHHcCCCCCCCC------CCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 003404 627 ------VHRFLGRMWRLIVGSSLPDGTF------KGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFI 694 (823)
Q Consensus 627 ------~~~~l~r~~~~~~~~~~~~~~~------~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~ 694 (823)
+.....|+..++.......... .........+.+..++..+.++...+.+++++++++.++..+++++
T Consensus 501 ~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La 580 (629)
T 2zue_A 501 GESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELA 580 (629)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1112233333331100000000 0000111233456678889999999999999999999999999999
Q ss_pred HHHhccc
Q 003404 695 NAAYKWE 701 (823)
Q Consensus 695 ~~~~~~~ 701 (823)
...|+|.
T Consensus 581 ~~fn~fy 587 (629)
T 2zue_A 581 SLFNKFY 587 (629)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998853
No 30
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.44 E-value=8.4e-14 Score=157.07 Aligned_cols=123 Identities=16% Similarity=0.175 Sum_probs=84.9
Q ss_pred ccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHH-----H----HHHHHHHHHcCCCCCCCC
Q 003404 578 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR-----F----LGRMWRLIVGSSLPDGTF 648 (823)
Q Consensus 578 G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~-----~----l~r~~~~~~~~~~~~~~~ 648 (823)
+.|||||+||+|+|.++++++|+|++|||+++. .+..+.+|+.+.+....+ + .+|+.+++..........
T Consensus 283 ~~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~-~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~~~~~~ 361 (464)
T 3fnr_A 283 PYKMSKRAGNFILMSDVVDEIGSDALRYIFLSK-KCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDV 361 (464)
T ss_dssp ECCC---CCSSCBHHHHHHHHCHHHHHHHTTSS-CTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTS
T ss_pred ccCCcCcCCCCCCHHHHHhhccHHHHHHHHHhc-CCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 359999999999999999999999999999965 567888888766532111 1 234444442221110111
Q ss_pred CCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccc
Q 003404 649 KGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE 701 (823)
Q Consensus 649 ~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~ 701 (823)
...........+.+++..+.++...+.+++++|+++.++..+++|+..+|+|.
T Consensus 362 ~~~~~~~L~~~e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY 414 (464)
T 3fnr_A 362 MKADLQSLNQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFY 414 (464)
T ss_dssp TTCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHH
T ss_pred cccChhhCChHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 00011112233777889999999999999999999999999999999999864
No 31
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=97.93 E-value=1.6e-05 Score=92.62 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=81.6
Q ss_pred ccccCCCCccChhHHHHHhCc----------------------------chheeeeeecCCccCCccccccchHHH----
Q 003404 580 KMSKSRGNVVNPDDVVTEYGA----------------------------DSLRLYEMFMGPFRDSKTWNTSGIEGV---- 627 (823)
Q Consensus 580 KMSKS~GNvV~p~~ii~~yGa----------------------------D~lRl~ll~~~~~~~d~~~s~~~i~~~---- 627 (823)
|||||+||+|++.|+++.++. .++||++++ ..+..+.+|+++.+...
T Consensus 407 kMSkR~G~~v~L~dLlde~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls-~~~~s~~~Fd~d~~~~~~g~t 485 (607)
T 1f7u_A 407 GMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQ-GKRINNYEFKWERMLSFEGDT 485 (607)
T ss_dssp SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHS-SCTTCCEECCHHHHHCCSSSS
T ss_pred cccCCCCCcccHHHHHHHHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhc-cCCCCCcccCHHHHHHHhccc
Confidence 799999999999999998844 479999994 67788889997665421
Q ss_pred ----HHHHHHHHHHHHcC-CCCCCCCCCCccC-CCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccc
Q 003404 628 ----HRFLGRMWRLIVGS-SLPDGTFKGGTVV-NDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE 701 (823)
Q Consensus 628 ----~~~l~r~~~~~~~~-~~~~~~~~~~~~~-~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~ 701 (823)
.....|+...+... ............. ...+.+..++..|.++...+.+++++++.+.+..-++++....|+|.
T Consensus 486 ~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~fn~fY 565 (607)
T 1f7u_A 486 GPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCY 565 (607)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 11122333333221 0000000000000 11233556777888999999999999999999999999999988863
No 32
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.47 E-value=0.00062 Score=77.36 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=40.5
Q ss_pred cccccccCCCC---------------ccChhHHHHH-hCcchheeeeeecCCccCCccccccchHHHHH
Q 003404 577 RAHKMSKSRGN---------------VVNPDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 629 (823)
Q Consensus 577 ~G~KMSKS~GN---------------vV~p~~ii~~-yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~ 629 (823)
+|+|||||+|| ..+..++.++ |.++++|.|+++.+....+.+|+.+.+..+.|
T Consensus 326 ~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~~r 394 (553)
T 3aii_A 326 DDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNR 394 (553)
T ss_dssp ------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHHH
T ss_pred CCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccccHHHHHHHHH
Confidence 38999999998 6678888887 99999999999888777888899888887765
No 33
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=96.03 E-value=0.0031 Score=67.81 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=24.9
Q ss_pred cccccccCCCCccChhHHHHHhCcchheeeeeec
Q 003404 577 RAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFM 610 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~ 610 (823)
+|+|||||.||.|++.+ .+|.+|-.++++
T Consensus 211 ~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 211 DGQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp TSSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred CCCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 38999999999999987 489999888754
No 34
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=93.78 E-value=0.051 Score=58.11 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=16.9
Q ss_pred CCceeeecChhhHHHHHHHHHHHHH
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWHK 496 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~~ 496 (823)
+-+|+..+|.||- .|+..+|=...
T Consensus 138 ~~~~~vpvG~DQ~-~hi~l~Rdia~ 161 (322)
T 3tzl_A 138 FDTRIVPVGKDQI-QHVEIARDIAL 161 (322)
T ss_dssp TTCSEEECCGGGH-HHHHHHHHHHH
T ss_pred hCCcEEEeccchH-HHHHHHHHHHH
Confidence 4689999999995 45555565533
No 35
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=93.61 E-value=0.029 Score=63.47 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHHHHHHHHhcCcccCCC-eeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 29 HPKITTLRNINRFRTQLKSLGFSYDWNR-EISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 29 ~p~~~~~~~i~~~~~~~~~lG~~~Dw~~-~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
++..-+..+++.+.+.|+.||+..| . +|+. .++...-+....+|.++|++|.
T Consensus 44 D~~R~~~~~~~~i~~dL~wLGl~wd--e~~~~Q--S~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 44 DRERSRPEYTENILEGLQWLGLTWD--EGPYFQ--SDRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp SSSSCCHHHHHHHHHHHHHTTCCCS--EEEEEG--GGCHHHHHHHHHHHHHTTSEEE
T ss_pred CccccchHHHHHHHHHHHHcCCCCC--CCCccc--cCCHHHHHHHHHHHHHCCCceE
Confidence 4555567889999999999998554 5 3433 3344445567788999999997
No 36
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=93.60 E-value=0.016 Score=70.34 Aligned_cols=76 Identities=22% Similarity=0.462 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCC-h
Q 003404 67 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW-P 145 (823)
Q Consensus 67 ~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~w-p 145 (823)
..-..+...|-++|++.+.....+ .++.|||||.+++.+...|||++++++++++++.++.+.| |
T Consensus 361 ~a~~~i~~~L~~~g~~~~~~~~~h--------------~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~P 426 (821)
T 1ile_A 361 EANRAILRDLRGRGLLFKEESYLH--------------SYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVP 426 (821)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEE--------------EEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESS
T ss_pred HHHHHHHHHHHhCCCeeeeecccc--------------cCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcCeEEEC
Confidence 345567788889998766543322 3578999999999999999999999999999998887776 6
Q ss_pred HHHH-HHHHhhh
Q 003404 146 ESVK-EMQRNWI 156 (823)
Q Consensus 146 ~~v~-~~q~~wi 156 (823)
+..+ ..-.+||
T Consensus 427 ~~~~~~~~~~~l 438 (821)
T 1ile_A 427 PHIKEGRYGEWL 438 (821)
T ss_dssp GGGTTTTTHHHH
T ss_pred chhhHhHHHHHH
Confidence 6652 2445666
No 37
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=93.20 E-value=0.012 Score=66.93 Aligned_cols=54 Identities=22% Similarity=0.248 Sum_probs=40.2
Q ss_pred ccccccccCCCC---------------ccChhHHHHH-hCcchheeeeeecCCccCCccccccchHHHHH
Q 003404 576 ARAHKMSKSRGN---------------VVNPDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 629 (823)
Q Consensus 576 ~~G~KMSKS~GN---------------vV~p~~ii~~-yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~ 629 (823)
++|+|||||+|| .++..++.++ |.++++|.|++..+....+...+...++.+.+
T Consensus 263 ~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~~le~~~~ 332 (553)
T 1qtq_A 263 LEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIR 332 (553)
T ss_dssp BTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHHHH
T ss_pred CCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccchhhHHHHHH
Confidence 459999999997 6778899987 99999999999877654443344445555444
No 38
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=93.04 E-value=0.037 Score=59.24 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=21.2
Q ss_pred cccccccCCCCccChhHHHHHhCcchheeeee
Q 003404 577 RAHKMSKSRGNVVNPDDVVTEYGADSLRLYEM 608 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll 608 (823)
+|+|||||.||.|...+ ++-.++.++=++.
T Consensus 232 dG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~ 261 (322)
T 2yxn_A 232 DGTKFGKTEGGAVWLDP--KKTSPYKFYQFWI 261 (322)
T ss_dssp TSCBTTEETTEECBSST--TTSCHHHHHHHHH
T ss_pred CcccccCCCCCeeeccC--CCCCHHHHHHHHh
Confidence 38999999999988776 4445555554444
No 39
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=92.82 E-value=0.089 Score=56.59 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=17.1
Q ss_pred CCceeeecChhhHHHHHHHHHHHHH
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWHK 496 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~~ 496 (823)
+-+|+..+|.||- .|+..+|=...
T Consensus 140 ~~~~lvp~G~DQ~-~~i~l~rdla~ 163 (337)
T 2el7_A 140 YKADTVPVGEDQV-QHIELTREIAR 163 (337)
T ss_dssp TTCCEEECCGGGC-HHHHHHHHHHH
T ss_pred hCCcEEEcccchH-HHHHHHHHHHH
Confidence 5689999999995 46555555543
No 40
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=92.75 E-value=0.075 Score=58.29 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=14.6
Q ss_pred cccccccCCCCccChhH
Q 003404 577 RAHKMSKSRGNVVNPDD 593 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ 593 (823)
+|+|||||.||.|+..+
T Consensus 290 dG~KMSKS~~naI~L~d 306 (392)
T 1y42_X 290 SGAKFGKSAGNAIWLDP 306 (392)
T ss_dssp TCCBTTBCSSSBCBSST
T ss_pred chhhccCCCCCeeeccC
Confidence 48999999999997765
No 41
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=92.63 E-value=0.1 Score=56.26 Aligned_cols=28 Identities=32% Similarity=0.359 Sum_probs=20.6
Q ss_pred cccccccCCCCccChhHHHHHhCcchheeeeee
Q 003404 577 RAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 609 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~ 609 (823)
+|+|||||.+|.|...+ .++.++=.+.+
T Consensus 202 dG~KMSKS~~n~I~L~d-----sp~~i~~Ki~~ 229 (340)
T 2g36_A 202 DGRKMSKSYGNIINLEI-----SEKELEQTILR 229 (340)
T ss_dssp TSSCCCGGGTCCCBTTC-----CHHHHHHHHHT
T ss_pred CccccCCCCCCeEeeeC-----CHHHHHHHHHh
Confidence 37899999999998776 55555555543
No 42
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=92.40 E-value=0.075 Score=64.39 Aligned_cols=75 Identities=21% Similarity=0.362 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCC--CCC-C
Q 003404 68 WTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLD--DLD-W 144 (823)
Q Consensus 68 ~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~--~l~-w 144 (823)
.-..+...|-++|++.+.+... -.++.|||||.+++.+...|||++++++++++++.++ .+. +
T Consensus 317 a~~~iv~~L~~~g~l~~~~~~~--------------h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~ 382 (862)
T 1gax_A 317 ARRKAVELFREAGHLVKEEDYT--------------IALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFV 382 (862)
T ss_dssp HHHHHHHHHHTTTCEEEEEEEE--------------ECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEES
T ss_pred HHHHHHHHHHhCCCeeeecccc--------------ccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCceEc
Confidence 4556777888899876544332 2357899999999999999999999999999999884 455 8
Q ss_pred hHHHHHHHHhhh
Q 003404 145 PESVKEMQRNWI 156 (823)
Q Consensus 145 p~~v~~~q~~wi 156 (823)
|+..+..-.+|+
T Consensus 383 P~~~~~~~~~wl 394 (862)
T 1gax_A 383 PERWKKVNMDWL 394 (862)
T ss_dssp SSHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999889998
No 43
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=92.11 E-value=0.08 Score=58.69 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.1
Q ss_pred cccccccCCCC-ccChhH
Q 003404 577 RAHKMSKSRGN-VVNPDD 593 (823)
Q Consensus 577 ~G~KMSKS~GN-vV~p~~ 593 (823)
+|+|||||.|| .|+..+
T Consensus 228 dG~KMSKS~~nsaI~L~d 245 (432)
T 2jan_A 228 DGTKFGKSTGGGSLWLDP 245 (432)
T ss_dssp TSCBTTBCSSSCBCBSST
T ss_pred CcCcCCCCCCCCeEEccC
Confidence 38999999999 887655
No 44
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=91.58 E-value=0.057 Score=59.69 Aligned_cols=17 Identities=18% Similarity=0.265 Sum_probs=14.6
Q ss_pred cccccccCCCCccChhH
Q 003404 577 RAHKMSKSRGNVVNPDD 593 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ 593 (823)
+|+|||||.||.|+..+
T Consensus 227 dG~KMSKS~~naI~L~d 243 (419)
T 2ts1_A 227 DGTKFGKTESGTIWLDK 243 (419)
T ss_dssp TSCCTTCCSSCCCBSST
T ss_pred CcccccCCCCCeEecCC
Confidence 38999999999997765
No 45
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=91.46 E-value=0.075 Score=58.03 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=11.9
Q ss_pred cccccccCCCC-ccChhHHHHHhCcchheeeee
Q 003404 577 RAHKMSKSRGN-VVNPDDVVTEYGADSLRLYEM 608 (823)
Q Consensus 577 ~G~KMSKS~GN-vV~p~~ii~~yGaD~lRl~ll 608 (823)
+|+|||||.|| .|...+= ++.+|=.++
T Consensus 219 dG~KMSKS~~ns~I~L~d~-----p~~i~kKi~ 246 (372)
T 1n3l_A 219 TGSKMSSSEEESKIDLLDR-----KEDVKKKLK 246 (372)
T ss_dssp SCC-------CCSCBTTCC-----HHHHHHHHH
T ss_pred CcccccCCCCCCeEeccCC-----HHHHHHHHH
Confidence 38999999999 6776543 555555554
No 46
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=91.45 E-value=0.065 Score=59.39 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=14.6
Q ss_pred cccccccCCCCccChhH
Q 003404 577 RAHKMSKSRGNVVNPDD 593 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ 593 (823)
+|+|||||.||.|+..+
T Consensus 228 dG~KMSKS~~naI~L~d 244 (420)
T 1jil_A 228 DGKKFGKSESGAVWLDA 244 (420)
T ss_dssp TSCBTTBCSSSBCBSST
T ss_pred ccccccCCCCCeEecCC
Confidence 38999999999997765
No 47
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=91.38 E-value=0.05 Score=59.00 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=10.7
Q ss_pred cccccccCCCCccChhHHHHHhCcchheeeee
Q 003404 577 RAHKMSKSRGNVVNPDDVVTEYGADSLRLYEM 608 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll 608 (823)
+|+|||||.||.|...+ ++-.++.++=+++
T Consensus 251 dG~KMSKS~~naI~L~d--~~tsp~~i~~ki~ 280 (356)
T 2pid_A 251 TGAKLGKSAGNAVWLNR--DKTSPFELYQFFV 280 (356)
T ss_dssp -----------CCBSST--TTSCHHHHHHHHH
T ss_pred CcccccCCCCCeeeccC--CCCCHHHHHHHHH
Confidence 38999999999997766 2334555554544
No 48
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=91.24 E-value=0.046 Score=65.00 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=38.0
Q ss_pred cccccccCCCC---------------ccChhHHHHH-hCcchheeeeeecCCccCCccccccchHHHHH
Q 003404 577 RAHKMSKSRGN---------------VVNPDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 629 (823)
Q Consensus 577 ~G~KMSKS~GN---------------vV~p~~ii~~-yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~ 629 (823)
+|+|||||+|| .++..++.++ |.++++|.|++..+....+...+...++.+.+
T Consensus 304 ~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~~le~~~r 372 (851)
T 2hz7_A 304 EYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAVR 372 (851)
T ss_dssp TTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHHHHHHHHH
T ss_pred CCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCcccccHHHHHHHHH
Confidence 38999999987 5677888877 99999999999777654443334444444433
No 49
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=91.21 E-value=0.19 Score=54.28 Aligned_cols=25 Identities=12% Similarity=-0.071 Sum_probs=17.4
Q ss_pred CCceeeecChhhHHHHHHHHHHHHHH
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWHKV 497 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~~~ 497 (823)
+-+|+..+|.||. .|+..+|=....
T Consensus 161 ~~~~~vpvG~DQ~-~hi~l~rdia~r 185 (351)
T 1yi8_B 161 FGATLVPVGDDQL-PMLEQTREIVRR 185 (351)
T ss_dssp HTCSEEEECGGGH-HHHHHHHHHHHH
T ss_pred cCCCEEEecCCcH-HHHHHHHHHHHH
Confidence 4689999999995 455556655433
No 50
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=91.08 E-value=0.048 Score=66.65 Aligned_cols=52 Identities=21% Similarity=0.262 Sum_probs=47.4
Q ss_pred cCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC-ChHHHHHHHHhhhc
Q 003404 106 DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WPESVKEMQRNWIG 157 (823)
Q Consensus 106 ~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~-wp~~v~~~q~~wig 157 (823)
++.||||+.+++-+..+|||++++++++++++.++.++ .|+..+..-.+||.
T Consensus 394 ~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~~~~P~~~~~r~~~~l~ 446 (917)
T 1ffy_A 394 YPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVR 446 (917)
T ss_dssp EEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHHHHHHHHHHHH
T ss_pred CCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcCcccCHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999887 58888888888883
No 51
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=90.80 E-value=0.088 Score=58.46 Aligned_cols=27 Identities=26% Similarity=0.210 Sum_probs=21.7
Q ss_pred cc-ccccCCCCccChhHHHHHhCcchheeeeee
Q 003404 578 AH-KMSKSRGNVVNPDDVVTEYGADSLRLYEMF 609 (823)
Q Consensus 578 G~-KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~ 609 (823)
|. |||||.||.|+..+ .++.++=++++
T Consensus 229 G~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~ 256 (432)
T 1h3f_A 229 GREKMSKSLDNYIGLTE-----PPEAMFKKLMR 256 (432)
T ss_dssp SSSBCCGGGTCCCBTTS-----CHHHHHHHHHT
T ss_pred CccccCcCCCCeeCCCC-----CHHHHHHHHhC
Confidence 64 99999999999887 67777766664
No 52
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=90.69 E-value=0.24 Score=53.46 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=17.7
Q ss_pred CCceeeecChhhHHHHHHHHHHHHHH
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWHKV 497 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~~~ 497 (823)
+-+|+..+|.||. .|+..+|=....
T Consensus 146 ~~a~~vpvG~DQ~-~~lel~Rdia~r 170 (348)
T 2yy5_A 146 YQPDIVPVGNDQK-QHLELTRDLAQR 170 (348)
T ss_dssp TCCSEEECCGGGH-HHHHHHHHHHHH
T ss_pred hCccEEEecccHH-HHHHHHHHHHHH
Confidence 5699999999995 455556655433
No 53
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=90.53 E-value=0.26 Score=52.77 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=17.0
Q ss_pred CCceeeecChhhHHHHHHHHHHHHH
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWHK 496 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~~ 496 (823)
+-+|+..+|.||. .|+..+|=...
T Consensus 136 ~~~~~vpvG~DQ~-~~iel~Rdia~ 159 (328)
T 1i6k_A 136 YNTDIVPVGEDQK-QHIELTRDLAE 159 (328)
T ss_dssp TTCSEEECCGGGH-HHHHHHHHHHH
T ss_pred hCCCEEecccchH-HHHHHHHHHHH
Confidence 5699999999995 45554555543
No 54
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=90.36 E-value=0.029 Score=68.01 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHHHHHcCcEEEcceeeeccCCC------------CcccCccccc-cCccccCCCCeEEe-ccchhhhhH
Q 003404 63 PAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPAL------------GTVLANEEVV-DGVSERGGHPVIRK-PMRQWMLKI 128 (823)
Q Consensus 63 p~y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~------------~T~La~~ev~-~g~~~~~~~~v~~~-~~~qw~~~i 128 (823)
+...+.++.+|.+++.+|.++.+ .-.-+|..+ +..+...++. +..|+|||.+++-+ ...||||++
T Consensus 391 ~~~~~~~~~~~~~~~~~G~~~~g-~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~r~g~~vi~~~~~~qwF~~~ 469 (810)
T 1wkb_A 391 EKLEQATKTIYKAEYHKGIFKVP-PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDY 469 (810)
T ss_dssp SCTHHHHHHHHHHHHHSCEECSG-GGTTEEHHHHHHHHHHHHHTTTSEEEEEEESSSCCBCTTSCBCEEEEEEEEEEECT
T ss_pred hhhhhhhhhhhhccccCceEecc-CcCCeEHHHhHHHHHHHHHhCCCeeeEEecCCCCcCCCCCCEEEEEecCCceeEec
Confidence 34666677777777777776621 111111111 0000111111 46788999998877 689999999
Q ss_pred hh--hHHHhhccCCCCC-ChHHHHHHHHhhh
Q 003404 129 TE--YADRLLDDLDDLD-WPESVKEMQRNWI 156 (823)
Q Consensus 129 t~--y~~~l~~~l~~l~-wp~~v~~~q~~wi 156 (823)
++ |++++++.++... +|+..+..-.+|+
T Consensus 470 ~~~~~~~~~l~~~~~~~~~P~~~~~~~~~~l 500 (810)
T 1wkb_A 470 GNPEWKEKARKALERMKILPETRRAQFEAII 500 (810)
T ss_dssp TCHHHHHHHHHHHHTSEEESGGGHHHHHHHH
T ss_pred ChHHHHHHHHhhhcccEEECcchhchHHHHh
Confidence 85 9999999888876 7888877777887
No 55
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=90.30 E-value=0.11 Score=58.48 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=29.0
Q ss_pred cccccccCCCCccChhHHHHH-hCcchheeeeeecC
Q 003404 577 RAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMG 611 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ii~~-yGaD~lRl~ll~~~ 611 (823)
+|+||||++|++ ...++.+. |-++++|.|++..+
T Consensus 259 ~G~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~lG 293 (481)
T 2o5r_A 259 DGKKLSKRHGAT-SVEAFRDMGYLPEALVNYLALLG 293 (481)
T ss_dssp TSSBCCGGGSCC-BHHHHHHHTCCHHHHHHHHHTSS
T ss_pred CCCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHHhC
Confidence 389999999998 78888875 88999999988654
No 56
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=90.11 E-value=0.17 Score=53.89 Aligned_cols=16 Identities=50% Similarity=0.723 Sum_probs=13.5
Q ss_pred c-cccccCCCCccChhH
Q 003404 578 A-HKMSKSRGNVVNPDD 593 (823)
Q Consensus 578 G-~KMSKS~GNvV~p~~ 593 (823)
| +|||||.||.|+..+
T Consensus 201 G~~KMSKS~~~~I~L~d 217 (314)
T 2zp1_A 201 GEGKMSSSKGNFIAVDD 217 (314)
T ss_dssp SSSBCCTTTTCSCBTTC
T ss_pred cccccCCCCcceecCCC
Confidence 6 799999999997654
No 57
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=88.65 E-value=0.15 Score=56.07 Aligned_cols=16 Identities=31% Similarity=0.277 Sum_probs=4.7
Q ss_pred ccccccCCCCc-cChhH
Q 003404 578 AHKMSKSRGNV-VNPDD 593 (823)
Q Consensus 578 G~KMSKS~GNv-V~p~~ 593 (823)
|+|||||.+|. |+..+
T Consensus 225 G~KMSKS~~ns~I~L~D 241 (394)
T 2dlc_X 225 GGKMSASDPNSKIDLLE 241 (394)
T ss_dssp ---------CCSCBTTC
T ss_pred CCcCCCCCCCCEEeccC
Confidence 79999999996 87654
No 58
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=88.19 E-value=0.46 Score=55.20 Aligned_cols=55 Identities=15% Similarity=0.089 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHH-HHHHHHHHHHHHcCcEEEcceee
Q 003404 31 KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYY-KWTQWIFLQLLKRGLAYQAEVPV 89 (823)
Q Consensus 31 ~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~-~~~~~~F~~L~~~gliy~~~~~v 89 (823)
+.++...++.+++.+++||+.+| .+...++ |. ..+..++..|.++|++|...--+
T Consensus 267 ~~~~~~~~~~~~~~~~~L~V~fD--~~~~ES~--~~~~~~~~vi~~L~~kG~~ye~dGa~ 322 (607)
T 1f7u_A 267 KRFREFSIEKYIDTYARLNIKYD--VYSGESQ--VSKESMLKAIDLFKEKGLTHEDKGAV 322 (607)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCS--EEEEGGG--CCHHHHHHHHHHHHHTTCEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHcCCcce--eecCcch--hhhhHHHHHHHHHHhCCCEEEECCcE
Confidence 45678888999999999999997 4444443 33 57899999999999999864433
No 59
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=87.59 E-value=0.24 Score=53.88 Aligned_cols=23 Identities=22% Similarity=0.184 Sum_probs=16.1
Q ss_pred CCceeeecChhhHHHHHHHHHHHH
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWH 495 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~ 495 (823)
+-+|+..+|.||- .|+..+|=..
T Consensus 199 l~ad~vpgG~DQ~-~~l~l~Rdla 221 (373)
T 3vgj_A 199 LNVDICQLGIDQR-KVNMLAREYC 221 (373)
T ss_dssp TTCSEECCBGGGH-HHHHHHHHHH
T ss_pred cCCcEEEcchhhH-HHHHHHHHHH
Confidence 4589999999994 4555455553
No 60
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=86.56 E-value=0.36 Score=53.58 Aligned_cols=15 Identities=33% Similarity=0.310 Sum_probs=6.8
Q ss_pred cccccCCCC-ccChhH
Q 003404 579 HKMSKSRGN-VVNPDD 593 (823)
Q Consensus 579 ~KMSKS~GN-vV~p~~ 593 (823)
+|||||.+| .|...+
T Consensus 294 ~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 294 TKMSASDDTTAIFMTD 309 (432)
T ss_dssp ------CGGGCCBTTC
T ss_pred cccCCCCCCCeEeccC
Confidence 899999999 787654
No 61
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=85.43 E-value=0.14 Score=63.19 Aligned_cols=51 Identities=22% Similarity=0.390 Sum_probs=44.0
Q ss_pred cCccccCCCCeEEe-ccchhhhhHh--hhHHHhhccCCCCC-ChHHHHHHHHhhh
Q 003404 106 DGVSERGGHPVIRK-PMRQWMLKIT--EYADRLLDDLDDLD-WPESVKEMQRNWI 156 (823)
Q Consensus 106 ~g~~~~~~~~v~~~-~~~qw~~~it--~y~~~l~~~l~~l~-wp~~v~~~q~~wi 156 (823)
+..|||||.+++-+ ...|||++++ ++.+.+++.++.+. +|+..+..-.+|+
T Consensus 446 ~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~~P~~~~~~~~~~l 500 (967)
T 1wz2_A 446 KNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAII 500 (967)
T ss_dssp SCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCEESSTTHHHHHHHH
T ss_pred CceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhccEeeCccccchHHHhh
Confidence 47789999999888 6899999998 59999999998887 7888887778887
No 62
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=85.35 E-value=0.57 Score=50.28 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=18.6
Q ss_pred CCceeeecChhhHHHHHHHHHHHHHHH
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWHKVL 498 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~~~L 498 (823)
+-+|+..+|.||. .|+..+|=....+
T Consensus 142 ~~ad~vpvG~DQ~-~hlel~Rdia~rf 167 (341)
T 3sz3_A 142 YGAHQVPVGSDQK-QHLELARDIATRF 167 (341)
T ss_dssp TTCSEECCCGGGH-HHHHHHHHHHHHH
T ss_pred cCCCEEEeccchH-HHHHHHHHHHHHh
Confidence 4589999999995 5666567664443
No 63
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=85.12 E-value=0.22 Score=55.85 Aligned_cols=54 Identities=30% Similarity=0.269 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHHHHHHHHhcCcccCCCee-------ecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 29 HPKITTLRNINRFRTQLKSLGFSYDWNREI-------STIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 29 ~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~-------~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
++..-+..+++.+.+.|+.||+..| ... -+...++...-+....+|.++|++|.
T Consensus 44 D~~R~~~~~~~~I~~dl~wlGl~wd--~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~ 104 (468)
T 1j09_A 44 DRARYVPGAEERILAALKWLGLSYD--EGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYR 104 (468)
T ss_dssp CTTSCCTTHHHHHHHHHHHTTCCCS--BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEE
T ss_pred CCcccChHHHHHHHHHHHHcCCCCC--CCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEE
Confidence 5555567788999999999998644 541 13334445555667788999999986
No 64
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=84.70 E-value=0.34 Score=52.61 Aligned_cols=16 Identities=44% Similarity=0.258 Sum_probs=12.5
Q ss_pred ccccccC-CCCccChhH
Q 003404 578 AHKMSKS-RGNVVNPDD 593 (823)
Q Consensus 578 G~KMSKS-~GNvV~p~~ 593 (823)
|+||||| .+|.|...+
T Consensus 236 g~KMSKS~~~~~I~L~d 252 (364)
T 2cya_A 236 EVKMSKSKPETAVFVVD 252 (364)
T ss_dssp -CBCCSSSGGGSCBTTC
T ss_pred ccccCCCCCCCEeeccC
Confidence 7999999 688887654
No 65
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=84.21 E-value=0.37 Score=55.69 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=29.4
Q ss_pred cccccccCCCCccChhHHHHH-hCcchheeeeeecCC
Q 003404 577 RAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGP 612 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ii~~-yGaD~lRl~ll~~~~ 612 (823)
+|+||||+.|+ +...++.+. |-++++|-|++..+.
T Consensus 356 ~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG~ 391 (592)
T 3al0_C 356 DRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGW 391 (592)
T ss_dssp TSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTTB
T ss_pred CCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhCC
Confidence 38999999999 578888874 889999999987653
No 66
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=84.19 E-value=0.43 Score=53.79 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=29.3
Q ss_pred cccccccCCCCccChhHHHHH-hCcchheeeeeecCC
Q 003404 577 RAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGP 612 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ii~~-yGaD~lRl~ll~~~~ 612 (823)
+|+||||+.|+ ++..++.+. |-++++|-|++..+.
T Consensus 252 ~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG~ 287 (488)
T 3afh_A 252 DRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGW 287 (488)
T ss_dssp TSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred CCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhCC
Confidence 38999999999 578888874 889999999987653
No 67
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=84.18 E-value=0.28 Score=53.72 Aligned_cols=15 Identities=47% Similarity=0.454 Sum_probs=3.8
Q ss_pred cccccCCCCccChhH
Q 003404 579 HKMSKSRGNVVNPDD 593 (823)
Q Consensus 579 ~KMSKS~GNvV~p~~ 593 (823)
.|||||.||.|...|
T Consensus 269 ~KMSKS~~~~I~L~D 283 (395)
T 3i05_A 269 GKMSSSSGTAVLLTD 283 (395)
T ss_dssp ---------CCBTTC
T ss_pred ccCCCCCCCcccCCC
Confidence 799999999996543
No 68
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=84.03 E-value=0.86 Score=51.41 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=39.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCC---------eeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNR---------EISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~---------~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
+++......+.+.+.+.|+.||+.+| . .|+ ..++...-+....+|.++|++|.
T Consensus 48 tD~~R~~~~~~~~I~~~L~wlGl~wD--egp~~gG~~~~~~--QS~r~~~y~~~~~~L~~~g~aY~ 109 (498)
T 2ja2_A 48 TDAQRDSEESYLALLDALRWLGLDWD--EGPEVGGPYGPYR--QSQRAEIYRDVLARLLAAGEAYH 109 (498)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHTCCCS--BBTTTBCTTCCCB--GGGCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcccChHHHHHHHHHHHHcCCCcC--CCcCcCCCCCCee--eecCHHHHHHHHHHHHHcCCeEE
Confidence 35666678889999999999999666 4 333 33445556677889999999986
No 69
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=83.84 E-value=0.68 Score=49.89 Aligned_cols=21 Identities=14% Similarity=0.127 Sum_probs=14.0
Q ss_pred CceeeecChhhHHHHHHHHHHH
Q 003404 473 PVDVYVGGAEHAVLHLLYARFW 494 (823)
Q Consensus 473 p~D~~v~G~D~~~~Hlly~rfw 494 (823)
-+|+..+|.||- .|+..+|=.
T Consensus 186 ~~~~~~~G~DQ~-~~i~l~Rdi 206 (348)
T 2j5b_A 186 GIDICQLGIDQR-KVNMLAIEY 206 (348)
T ss_dssp CCSEECCBGGGH-HHHHHHHHH
T ss_pred CCcEEEeccChH-HHHHHHHHH
Confidence 488999999994 343334433
No 70
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=82.36 E-value=0.7 Score=50.68 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=14.6
Q ss_pred CceeeecChhhHHHHHHHHHHHH
Q 003404 473 PVDVYVGGAEHAVLHLLYARFWH 495 (823)
Q Consensus 473 p~D~~v~G~D~~~~Hlly~rfw~ 495 (823)
-+|+..+|.||- .|+..+|=..
T Consensus 243 ~a~lvpvG~DQ~-~~i~l~Rdla 264 (406)
T 3tze_A 243 AMCLVPAAVDQD-PFFRLARDKA 264 (406)
T ss_dssp CEEEEEEEGGGH-HHHHHHHHHH
T ss_pred CCeEEeeccchH-HHHHHHHHHH
Confidence 477888999994 4555455443
No 71
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=82.21 E-value=1.2 Score=47.75 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=18.4
Q ss_pred CCceeeecChhhHHHHHHHHHHHHHHH
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWHKVL 498 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~~~L 498 (823)
+-+|+..+|.||. .|+..+|=....+
T Consensus 151 ~~ad~vpvG~DQ~-~hleltRdia~rf 176 (346)
T 3n9i_A 151 YQTNQVPVGEDQK-QHLELSRDIASRF 176 (346)
T ss_dssp TTCSEECCCGGGH-HHHHHHHHHHHHH
T ss_pred hCceEEEeccchH-HHHHHHHHHHHHh
Confidence 4589999999995 5655567664443
No 72
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=81.92 E-value=0.82 Score=49.84 Aligned_cols=15 Identities=20% Similarity=0.166 Sum_probs=11.9
Q ss_pred cccccC-CCCccChhH
Q 003404 579 HKMSKS-RGNVVNPDD 593 (823)
Q Consensus 579 ~KMSKS-~GNvV~p~~ 593 (823)
.||||| .+|.|...|
T Consensus 268 ~KMSKSd~~~~I~L~D 283 (386)
T 3hzr_A 268 TKFDIPSDHNSILLSD 283 (386)
T ss_dssp TCCCCCCTTTSCBTTC
T ss_pred CccCcCCCCCeeecCC
Confidence 499999 799996543
No 73
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=81.24 E-value=1.5 Score=47.84 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=18.5
Q ss_pred CCceeeecChhhHHHHHHHHHHHHHHH
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWHKVL 498 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~~~L 498 (823)
+-+|+..+|.||. .|+..+|=....+
T Consensus 170 ~~ad~vPvG~DQ~-~hleltRdia~rf 195 (388)
T 3prh_A 170 YGTDLVPPGEDQK-QHLELTRNLAERF 195 (388)
T ss_dssp TTCCEECCCSSCH-HHHHHHHHHHHHH
T ss_pred hCCCEEEechhHH-HHHHHHHHHHHHh
Confidence 4689999999995 5666567664433
No 74
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=81.06 E-value=0.52 Score=51.58 Aligned_cols=13 Identities=38% Similarity=0.238 Sum_probs=3.1
Q ss_pred cccccCCCC-ccCh
Q 003404 579 HKMSKSRGN-VVNP 591 (823)
Q Consensus 579 ~KMSKS~GN-vV~p 591 (823)
.|||||.+| .|..
T Consensus 265 ~KMSKS~~nsaI~L 278 (393)
T 3hv0_A 265 TKMSASVQNSSIFV 278 (393)
T ss_dssp --------CCCCBT
T ss_pred cCCCCCCCCCeEec
Confidence 799999988 6654
No 75
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=80.90 E-value=0.77 Score=51.57 Aligned_cols=15 Identities=40% Similarity=0.324 Sum_probs=12.3
Q ss_pred cccccCCCC-ccChhH
Q 003404 579 HKMSKSRGN-VVNPDD 593 (823)
Q Consensus 579 ~KMSKS~GN-vV~p~~ 593 (823)
.|||||.+| .|+..+
T Consensus 348 ~KMSKS~~nsaI~L~d 363 (477)
T 1r6t_A 348 TKMSASDPNSSIFLTD 363 (477)
T ss_dssp EECCTTSTTCCCBTTC
T ss_pred cccCCCCCCCceeecC
Confidence 799999999 776643
No 76
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=80.86 E-value=0.77 Score=50.89 Aligned_cols=15 Identities=40% Similarity=0.324 Sum_probs=12.4
Q ss_pred cccccCCCC-ccChhH
Q 003404 579 HKMSKSRGN-VVNPDD 593 (823)
Q Consensus 579 ~KMSKS~GN-vV~p~~ 593 (823)
.|||||.+| .|...+
T Consensus 301 ~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 301 TKMSASDPNSSIFLTD 316 (437)
T ss_dssp EECCTTSSSSCCBTTC
T ss_pred cccCCCCCCCeeeccC
Confidence 899999999 777643
No 77
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=80.32 E-value=0.86 Score=49.60 Aligned_cols=15 Identities=47% Similarity=0.364 Sum_probs=12.4
Q ss_pred cccccCC-CCccChhH
Q 003404 579 HKMSKSR-GNVVNPDD 593 (823)
Q Consensus 579 ~KMSKS~-GNvV~p~~ 593 (823)
+|||||. +|.|...+
T Consensus 250 ~KMSKS~~~~~I~L~d 265 (375)
T 2cyc_A 250 MKMSKSKPYSAVFIHD 265 (375)
T ss_dssp HBGGGSCGGGSCBTTC
T ss_pred hcccCCCCCCeeccCC
Confidence 8999999 78887654
No 78
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=79.60 E-value=0.95 Score=49.46 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=10.8
Q ss_pred cccccCCCC-ccCh
Q 003404 579 HKMSKSRGN-VVNP 591 (823)
Q Consensus 579 ~KMSKS~GN-vV~p 591 (823)
.|||||.+| .|..
T Consensus 252 ~KMSKS~~ns~I~L 265 (392)
T 3jxe_A 252 GKMSASKPETAIYL 265 (392)
T ss_dssp SCCCTTSGGGCCBT
T ss_pred cccccCCCCCeeeC
Confidence 699999998 7743
No 79
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=72.50 E-value=1.4 Score=51.71 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=15.5
Q ss_pred CCceeeecChhhHHHHHHHHHHH
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFW 494 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw 494 (823)
+-+|+..+|.||- .|+..+|=.
T Consensus 182 ~~ad~vpvG~DQ~-~~l~l~Rdl 203 (690)
T 3p0j_A 182 LKADICQLGLDQR-KVNMLAREY 203 (690)
T ss_dssp TTCSEECCBGGGH-HHHHHHHHH
T ss_pred hCCCEEeccccHH-HHHHHHHHH
Confidence 4589999999994 455545544
No 80
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=67.48 E-value=3.4 Score=43.39 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=37.0
Q ss_pred CChHHHHHHHHHHHHHHHHhcCcccCCC-eeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 29 HPKITTLRNINRFRTQLKSLGFSYDWNR-EISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 29 ~p~~~~~~~i~~~~~~~~~lG~~~Dw~~-~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
+++.-...+++.+.+.|+.||+.+| . .+..++ +....+.+..+|.++|++|.
T Consensus 48 D~~R~~~~~~~~I~~dL~~LGl~~D--~~~~~qSe--r~~~y~~~~~~L~~~G~aY~ 100 (298)
T 1nzj_A 48 DPPREVPGAAETILRQLEHYGLHWD--GDVLWQSQ--RHDAYREALAWLHEQGLSYY 100 (298)
T ss_dssp CGGGSCTTHHHHHHHHHHHTTCCCS--SCCEEGGG--CHHHHHHHHHHHHHTTCEEE
T ss_pred CchhhHHHHHHHHHHHHHHcCCCCC--CCCeeeeC--CHHHHHHHHHHHHHcCCccc
Confidence 4554557788889999999998766 4 333333 44556677888999999985
No 81
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=63.72 E-value=3.8 Score=45.36 Aligned_cols=12 Identities=42% Similarity=0.415 Sum_probs=9.6
Q ss_pred cccccCCCC-ccC
Q 003404 579 HKMSKSRGN-VVN 590 (823)
Q Consensus 579 ~KMSKS~GN-vV~ 590 (823)
+|||||.+| .|.
T Consensus 332 ~KMSKS~~ns~I~ 344 (451)
T 3foc_A 332 TKMSASDPNSAIY 344 (451)
T ss_dssp CCCCTTCGGGSCB
T ss_pred CccCCCCCCCeee
Confidence 599999987 454
No 82
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=51.67 E-value=8.2 Score=43.26 Aligned_cols=54 Identities=17% Similarity=0.293 Sum_probs=39.5
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
++++..+..+++.+.+.|+.||+..| .. .+...++...-+....+|.++|++|.
T Consensus 67 tD~~R~~~~~~~~i~~dl~wlGl~~d--~~-~~~qS~r~~~y~~~~~~Li~~G~aY~ 120 (490)
T 4g6z_A 67 TDVERSSQEAVDAILEGMAWLGLDYD--EG-PYYQMQRMDRYREVLAQMQEKGLVYP 120 (490)
T ss_dssp CCGGGCCHHHHHHHHHHHHHTTCCCS--EE-EEEGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcccccHHHHHHHHHHHHHcCCCCC--CC-CcccccCHHHHHHHHHHHHHCCCEEe
Confidence 35665677889999999999998554 42 22334455666778889999999986
No 83
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=47.71 E-value=7.9 Score=41.88 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=10.5
Q ss_pred cccccccCCCC-ccC
Q 003404 577 RAHKMSKSRGN-VVN 590 (823)
Q Consensus 577 ~G~KMSKS~GN-vV~ 590 (823)
+|.|||||..| .|.
T Consensus 253 dG~KmS~S~~ns~I~ 267 (372)
T 3a04_A 253 DGRKMSSSRPDSTIF 267 (372)
T ss_dssp TSSBCCTTSGGGSCB
T ss_pred CCCccCCCCCCcccc
Confidence 48999999854 554
No 84
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=43.62 E-value=18 Score=37.85 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=0.0
Q ss_pred cccccccCCCCc
Q 003404 577 RAHKMSKSRGNV 588 (823)
Q Consensus 577 ~G~KMSKS~GNv 588 (823)
+|+|||||.||+
T Consensus 225 ~g~KLSKR~g~~ 236 (298)
T 1nzj_A 225 QGAKLSKQNHAP 236 (298)
T ss_dssp ------------
T ss_pred CCCcccccCCcc
Confidence 389999999997
No 85
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=40.02 E-value=32 Score=38.49 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=27.9
Q ss_pred ccccccCCCCccChhHHHHH-hCcchheeeeeecCC
Q 003404 578 AHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGP 612 (823)
Q Consensus 578 G~KMSKS~GNvV~p~~ii~~-yGaD~lRl~ll~~~~ 612 (823)
|+||||..|. ++..++.+. |.++++|=||+..|-
T Consensus 262 g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG~ 296 (490)
T 4g6z_A 262 GEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLGW 296 (490)
T ss_dssp SSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSSB
T ss_pred CCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhCC
Confidence 8999999986 577777765 889999999987653
No 86
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=39.06 E-value=30 Score=38.49 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEEc
Q 003404 36 RNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 85 (823)
Q Consensus 36 ~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~~ 85 (823)
..++.+++.+++||+.|| ..+. ...++..+..+...|-++|++|.+
T Consensus 146 ~~l~~~~~~~~~l~V~fD--~~~~--Ess~~~~~~~vv~~L~~~g~~~e~ 191 (464)
T 3fnr_A 146 KMLVLIKQNLEQAKIKID--SYVS--ERSYYDALNATLESLKEHKGIYEQ 191 (464)
T ss_dssp HHHHHHHHHHHHTTCCCS--CEEE--GGGGSTTHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhCCCce--eecC--HHHHHHHHHHHHHHHHHCCCEEEe
Confidence 345678889999999999 2221 122222788999999999999974
No 87
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=36.20 E-value=37 Score=38.49 Aligned_cols=54 Identities=20% Similarity=0.436 Sum_probs=38.4
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
++|+..+.++++.+.+.|+.||+..|- ..++.++ |.......-.+|.++|++|.
T Consensus 68 TD~~R~~~e~~~~I~edL~wLGl~wde-~~~~qSe--r~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 68 TNPVKEDIEYVESIKNDVEWLGFHWSG-NVRYSSD--YFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp CCGGGCCHHHHHHHHHHHHHTTCCCSS-SCEEGGG--GHHHHHHHHHHHHHTTSEEE
T ss_pred CCchhcCHHHHHHHHHHHHHcCCCCCC-CCeehcc--cHHHHHHHHHHHHHCCCcee
Confidence 467777889999999999999997763 3444333 22222333459999999997
No 88
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=30.16 E-value=28 Score=25.61 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=26.2
Q ss_pred CcEEEcceeeeccCCCCcccCccccccCccccC
Q 003404 80 GLAYQAEVPVNWCPALGTVLANEEVVDGVSERG 112 (823)
Q Consensus 80 gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~ 112 (823)
.|+|-..+--.-|+.|+.++.+.++..|-.||+
T Consensus 15 ~l~~d~~~gelvC~~CG~v~~e~~id~~~ewr~ 47 (50)
T 1pft_A 15 ELIYDPERGEIVCAKCGYVIEENIIDMGPEWRA 47 (50)
T ss_dssp CEEEETTTTEEEESSSCCBCCCCCCCCCSSSSC
T ss_pred ceEEcCCCCeEECcccCCcccccccccCCcccc
Confidence 466766666677999999999999988877875
No 89
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=27.55 E-value=59 Score=38.79 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=41.3
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
++|+.-+.++++.+.+.|+.||+..|- ..++. .+|...-+....+|.++|++|.
T Consensus 108 TD~~R~~~e~~~~IledL~wLGl~wde-~~~~q--Ser~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 108 TNPELARQEYVDSIADDLKWLGLDWGE-HFYYA--SDYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHTCCCTT-CEEEG--GGGHHHHHHHHHHHHHTTSEEE
T ss_pred CCcccccHHHHHHHHHHHHHcCCCCCC-CcccH--hhhHHHHHHHHHHHHHCCCcEe
Confidence 356666789999999999999997752 34333 3556666677889999999997
No 90
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=27.20 E-value=19 Score=20.72 Aligned_cols=10 Identities=20% Similarity=1.016 Sum_probs=7.9
Q ss_pred CcccEEEeCC
Q 003404 374 EPIPVVFLDG 383 (823)
Q Consensus 374 ~PIPi~~~~~ 383 (823)
-|+|++||..
T Consensus 4 kpvpiiycnr 13 (21)
T 8tfv_A 4 KPVPIIYCNR 13 (26)
T ss_dssp CCCCCEEEEG
T ss_pred CcccEEEEcC
Confidence 4899999953
No 91
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=25.92 E-value=67 Score=35.94 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=29.9
Q ss_pred cccccccCCCCccChhHHHHH-hCcchheeeeeecCC
Q 003404 577 RAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGP 612 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ii~~-yGaD~lRl~ll~~~~ 612 (823)
+|+|||||.||+ ...++.++ |.++++|.|++..|-
T Consensus 244 ~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG~ 279 (492)
T 2cfo_A 244 TGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLGW 279 (492)
T ss_dssp SSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTTB
T ss_pred CCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhCC
Confidence 389999999997 77888875 899999999997653
No 92
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=25.46 E-value=1e+02 Score=34.41 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=29.1
Q ss_pred cccccccCCCCccChhHHHHH-hCcchheeeeeecCC
Q 003404 577 RAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGP 612 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ii~~-yGaD~lRl~ll~~~~ 612 (823)
+|+||||+.|++ +..++.+. |.++++|.|++..|-
T Consensus 254 ~g~KLSKR~g~~-~l~~~r~~G~~peAl~~~l~~lG~ 289 (498)
T 2ja2_A 254 GTKKLSKRDPQS-NLFAHRDRGFIPEGLLNYLALLGW 289 (498)
T ss_dssp SSSBCCTTSGGG-BHHHHHHHTCCHHHHHHHHHTSSC
T ss_pred CCCcccccCCcc-cHHHHHhCCCCHHHHHHHHHHhCC
Confidence 389999999994 77777775 889999999987653
No 93
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=24.82 E-value=64 Score=36.57 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=41.5
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
++|+.-+.++++.+.+.++.||+..| ..++. .+|...-+....+|.++|++|.
T Consensus 138 tD~~R~~~e~~~~I~edL~wLGl~wd--~~~~q--Sdr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 138 TDPRRVDPEAYDMIPADLEWLGVEWD--ETVIQ--SDRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp CCGGGCCTTHHHHHHHHHHHHTCCCS--EEEEG--GGGHHHHHHHHHHHHHTTSEEE
T ss_pred CCcccccHHHHHHHHHHHHHcCCCCC--CCccc--ccCHHHHHHHHHHHHHcCCcee
Confidence 35666677889999999999998765 54443 4566667778889999999997
No 94
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=24.41 E-value=83 Score=35.11 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=40.9
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCCe---------eecCChhHHHHHHHHHHHHHHcCcEEEc
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNRE---------ISTIEPAYYKWTQWIFLQLLKRGLAYQA 85 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~---------~~T~~p~y~~~~~~~F~~L~~~gliy~~ 85 (823)
+++..-+..+++.+.+.|+.||+.+| .. |+. .++...-+....+|.++|++|.-
T Consensus 67 tD~~R~~~~~~~~I~~dL~wlGl~wD--e~~~~gG~~gp~~Q--Ser~~~y~~~~~~L~~~G~aY~c 129 (488)
T 3afh_A 67 TDTERSSREYEQQILESLRWCGLDWD--EGPDIGGDFGPYRQ--SERLEIYREYAEKLVEDKRAYYV 129 (488)
T ss_dssp CCTTTCCHHHHHHHHHHHHHTTCCCS--BBTTTBCTTCCCBG--GGCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcccccHHHHHHHHHHHHHcCCCCC--cCCCCCCCCCCeee--eCCHHHHHHHHHHHHHcCCeEec
Confidence 35666678899999999999998655 53 333 34445667788899999999974
No 95
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=23.23 E-value=53 Score=23.93 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=23.5
Q ss_pred eccCCCCcccCccccc---cCccccCCCCeEEe
Q 003404 90 NWCPALGTVLANEEVV---DGVSERGGHPVIRK 119 (823)
Q Consensus 90 ~w~p~~~T~La~~ev~---~g~~~~~~~~v~~~ 119 (823)
+=|-.|++..+++|++ .=+|..||+.|.-+
T Consensus 4 Y~C~rCg~~fs~~el~~lP~IrCpyCGyrii~K 36 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFM 36 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEEC
T ss_pred EEeeccCCCccHHHHhhCCCcccCccCcEEEEE
Confidence 4488999999999996 44788999977543
No 96
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=22.73 E-value=1.2e+02 Score=34.16 Aligned_cols=57 Identities=21% Similarity=0.177 Sum_probs=37.3
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCCe----ee-cCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNRE----IS-TIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~----~~-T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
++|..-.....+.+.+.|+.||+.+|-.-. |. ....++...=+....+|.++|++|.
T Consensus 66 tD~~R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~ 127 (512)
T 4gri_A 66 TDQSRYSPEAENDLYSSLKWLGISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYY 127 (512)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccc
Confidence 356656678889999999999997772110 00 0122233334456778999999995
No 97
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=22.28 E-value=84 Score=34.88 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=29.3
Q ss_pred cccccccCCCCccChhHHHHH-hCcchheeeeeecCC
Q 003404 577 RAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGP 612 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ii~~-yGaD~lRl~ll~~~~ 612 (823)
+|+||||++||. +..++.+. |-++++|-|++..|-
T Consensus 240 ~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~ 275 (468)
T 1j09_A 240 DKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGF 275 (468)
T ss_dssp TSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSC
T ss_pred CCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhcc
Confidence 389999999998 77777764 889999999987654
Done!