BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003405
(823 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R5L3|VPS39_MOUSE Vam6/Vps39-like protein OS=Mus musculus GN=Vps39 PE=2 SV=1
Length = 886
Score = 266 bits (681), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 225/782 (28%), Positives = 388/782 (49%), Gaps = 101/782 (12%)
Query: 2 VHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSS--ESDRSPPSDYQSL 59
+H+AF+ + ++ +ID +A++ +L+G G L +Y +D + P
Sbjct: 1 MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPESGSCN 60
Query: 60 RKESYELERTISGFSKKPILSMEVLASRQLLLSLSES-IAFHRLPNLETIAVLTKAKGAN 118
R E LE++ FSKK I + V++ ++L+SL E+ I H L + I ++KAKGA+
Sbjct: 61 RFE-VTLEKSNKNFSKK-IQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGAS 118
Query: 119 VYSWDDRRG-------FLCFARQKRVCIFRHDGGRGFVEVK-DFGVPDTVKSMSWCGENI 170
+++ D + +C A +K++ ++ R F E++ DF VPD KSM+WC +I
Sbjct: 119 LFTCDLQHTETGEEVLRMCVAVRKKLQLYFWKD-REFHELQGDFSVPDVPKSMAWCENSI 177
Query: 171 CIAIRKGYMILNAT-NGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQ 229
C+ ++ Y ++ G++ E+FP+G+ PLV L G++ +G++++ V +++ G Q
Sbjct: 178 CVGFKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQ 237
Query: 230 ADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIP-SSNAVV 288
+ W++ P+A+ Q PY +A+LPR VE+R+L P L+Q+I LQ R + SN +
Sbjct: 238 KCALNWTDIPVAMEHQPPYIVAVLPRYVEIRTLE-PRLLVQSIELQRPRFITSGGSNIIY 296
Query: 289 VALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIR--FA 346
VA + ++ L PVP+ QI QL FE AL L ++ +D S ++ HI+ +A
Sbjct: 297 VASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAEM---KDDSDSEKQQQIHHIKNLYA 353
Query: 347 HYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPSLSRG 406
LF ++E+M+ F D T+ + LYP + LP + + L + P+LS
Sbjct: 354 FNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDL-LPT-----DYRKQLQYPNPLPTLSG- 406
Query: 407 SSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEE 466
+EL++ +H +ALI +L +KRS +++K
Sbjct: 407 ----------------AELEK---------AH---LALIDYLTQKRSQLVKKL------- 431
Query: 467 VVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALE 526
N + H S+ S GT P +++ I+DT LL+ L T + A
Sbjct: 432 --------NDSDHQSS---TSPLMEGT-PTIKSKKKLLQIIDTTLLKCYLHTNVALVAPL 479
Query: 527 LLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEES-KSNQSQDEH 585
L N+C ++ E +L+K + Y+ L+ LY+ H +AL++ LV++S K+N H
Sbjct: 480 LRLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQV---LVDQSKKANSPLKGH 536
Query: 586 TQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSG-----NIPADLVNS 640
E ++YL+ L + L+ +S+ VL P +++F ++P D V +
Sbjct: 537 ------ERTVQYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLN 590
Query: 641 YLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDL---------SAQ 691
+L + ++ YLE ++ + E + N ++Q+Y +V D
Sbjct: 591 FLIENFKALAIPYLEHIIHVWEET-GSQFHNCLIQLYCEKVQSLMKDYLLSLPTGKSPVP 649
Query: 692 QKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLY 751
+ R+KLL LE S Y+P L+ P D L EERA+LLG+M +HE AL +Y
Sbjct: 650 AGEEGGELGEYRQKLLMFLEISSHYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIY 709
Query: 752 VH 753
VH
Sbjct: 710 VH 711
>sp|Q96JC1|VPS39_HUMAN Vam6/Vps39-like protein OS=Homo sapiens GN=VPS39 PE=1 SV=2
Length = 886
Score = 261 bits (666), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 224/781 (28%), Positives = 384/781 (49%), Gaps = 99/781 (12%)
Query: 2 VHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSS--ESDRSPPSDYQSL 59
+H+AF+ + ++ +ID +A++ +L+G G L +Y +D + P
Sbjct: 1 MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPESGSCN 60
Query: 60 RKESYELERTISGFSKKPILSMEVLASRQLLLSLSES-IAFHRLPNLETIAVLTKAKGAN 118
R E LE++ FSKK I + V++ ++L+SL E+ I H L + I ++KAKGA+
Sbjct: 61 RFE-VTLEKSNKNFSKK-IQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGAS 118
Query: 119 VYSWDDRRG-------FLCFARQKRVCIFRHDGGRGFVEVK-DFGVPDTVKSMSWCGENI 170
+++ D + +C A +K++ ++ R F E++ DF VPD KSM+WC +I
Sbjct: 119 LFTCDLQHTETGEEVLRMCVAVKKKLQLYFWKD-REFHELQGDFSVPDVPKSMAWCENSI 177
Query: 171 CIAIRKGYMILNAT-NGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQ 229
C+ ++ Y ++ G++ E+FP+G+ PLV L G++ +G++++ V +++ G Q
Sbjct: 178 CVGFKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQ 237
Query: 230 ADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIP-SSNAVV 288
+ W++ P+A+ Q PY IA+LPR VE+R+ P L+Q+I LQ R + SN +
Sbjct: 238 KCALNWTDIPVAMEHQPPYIIAVLPRYVEIRTFE-PRLLVQSIELQRPRFITSGGSNIIY 296
Query: 289 VALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIR--FA 346
VA + ++ L PVP+ QI QL FE AL L ++ +D S ++ HI+ +A
Sbjct: 297 VASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAEM---KDDSDSEKQQQIHHIKNLYA 353
Query: 347 HYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPSLSRG 406
LF ++E+M+ F D T+ + LYP + LP + + L + P LS
Sbjct: 354 FNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDL-LPT-----DYRKQLQYPNPLPVLSG- 406
Query: 407 SSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEE 466
+EL++ +H +ALI +L +KRS +++K
Sbjct: 407 ----------------AELEK---------AH---LALIDYLTQKRSQLVKKL------- 431
Query: 467 VVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALE 526
N + H S+ S GT P +++ I+DT LL+ L T + A
Sbjct: 432 --------NDSDHQSS---TSPLMEGT-PTIKSKKKLLQIIDTTLLKCYLHTNVALVAPL 479
Query: 527 LLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHT 586
L N+C ++ E +L+K + Y+ L+ LY+ H +AL++L + + K+N H
Sbjct: 480 LRLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVL--VDQSKKANSPLKGH- 536
Query: 587 QKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSG-----NIPADLVNSY 641
E ++YL+ L + L+ +S+ VL P +++F ++P D V +
Sbjct: 537 -----ERTVQYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGF 591
Query: 642 LKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDL---------SAQQ 692
L + + YLE ++ + E + S N ++Q+Y +V +
Sbjct: 592 LIENFKGLAIPYLEHIIHVWEETGS-RFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPA 650
Query: 693 KWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYV 752
+E R+KLL LE S Y+P L+ P D L EERA+LLG+M +HE AL +YV
Sbjct: 651 GEEEGELGEYRQKLLMFLEISSYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYV 710
Query: 753 H 753
H
Sbjct: 711 H 711
>sp|A4IG72|TGFA1_DANRE Transforming growth factor-beta receptor-associated protein 1
homolog OS=Danio rerio GN=tgfbrap1 PE=2 SV=1
Length = 863
Score = 116 bits (291), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 183/712 (25%), Positives = 298/712 (41%), Gaps = 126/712 (17%)
Query: 75 KKPILSMEVLASRQLLLSLSES-IAFHRLPNLETIAVL-TKAKGANVYSWDDR----RGF 128
KKP++ ++ ++ + L+ L +S I + LE + K KG + ++ F
Sbjct: 75 KKPVVELKAASALERLIVLCDSAITVVDMVTLEPVPTGGAKLKGVTAFCINENPVTGDAF 134
Query: 129 -----LCFARQK--RVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMIL 181
+ AR++ ++C D + EV P+ ++S G NIC+A+ YMIL
Sbjct: 135 CVEMAVVLARRRAVQICTVHEDRVQMLKEVT---TPEQPCALSLDGYNICLALSTQYMIL 191
Query: 182 NATNGALSEVFP-SGRIGPPLVVSLLSGELLLGKE-NIGVFVDQNGKLLQADRICWSEAP 239
N + GA ++FP P+V + E LL +G+F + G + Q + WSE
Sbjct: 192 NYSTGASQDLFPYDCEERKPIVKRIGREEFLLAAPGGLGMFANAEG-ISQRAPVSWSENV 250
Query: 240 IAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLF 299
IA + PY +AL V V S+ + L QT+ ++ + L VVVA +++ L
Sbjct: 251 IAAAVCFPYVVALDEGFVTVHSM-LDQQLKQTLSFRDGQLLQDFEGKVVVASSKAVYMLV 309
Query: 300 PVPLGAQIVQLTASGDFEEALALCKL----LPPEDASL--RAAKEGSIHIRFAHYLFDTG 353
P+PL QI L AS EEAL L + +P E + R + + I+F F
Sbjct: 310 PLPLERQIQDLLASHRVEEALTLTEAAQRNIPKEKYQILHRRILQQAGFIQFGQLQF--- 366
Query: 354 SYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPSLSRGSSGMSDD 413
EA EHF Q+D+ +SLYP ++LP ++ L +D L++G
Sbjct: 367 --LEAKEHFRKGQLDVRELISLYP-LLLPASSSFTRCHPPLHEFADLNHLTQG------- 416
Query: 414 MESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVG 473
D+ + K+ LI +L + RSS I A G E V
Sbjct: 417 ------------DQEKVQRFKRF-------LISYLHEVRSSDI----ANGFHEDV----- 448
Query: 474 DNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLNY 533
DTALL+ T S L+LL N
Sbjct: 449 ----------------------------------DTALLKLYAETSHES-LLDLLASENA 473
Query: 534 CDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPES 593
C + L+K + Y AL LY N + AL++ ++V N + T+ E
Sbjct: 474 CLLADSAPWLEKHHKYYALGLLYHYNGQDAAALQMWVKIV-----NGDLQDSTRPDLFEY 528
Query: 594 IIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLS--------GNIPADLVNSYLKQY 645
++++L D LV + L+ +++F G + AD V +YL+++
Sbjct: 529 VVDFLSFCSNLD--LVWRHADWALQKDQKIGVQIFTKRPTSEERRGQLNADDVITYLQKH 586
Query: 646 SPSMQGRYLELMLAMNENSISG-NLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRK 704
S Q L L + E + + +Y +VL S S E+ S R+
Sbjct: 587 S---QALLLYLEHLVLEKKLQKEKYHTHLAVLYAEKVLGLISRPST----SEEQLSAARQ 639
Query: 705 KLLSALESISGYNPEVLLKRL-PADALYEERAILLGKMNQHELALSLYVHKV 755
KL L+ + Y ++LL ++ ++ L ERA L GK+ +H+ AL + VH++
Sbjct: 640 KLQRLLKESNLYRVQLLLGKIQDSELLLLERATLHGKLEEHDKALHVLVHQL 691
>sp|Q8WUH2|TGFA1_HUMAN Transforming growth factor-beta receptor-associated protein 1
OS=Homo sapiens GN=TGFBRAP1 PE=1 SV=1
Length = 860
Score = 116 bits (291), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 190/717 (26%), Positives = 298/717 (41%), Gaps = 120/717 (16%)
Query: 65 ELERTISGFSKKPILSMEVLASRQLLLSLSE-SIAFHRLPNLETIAVLTKAKGA------ 117
+L+R + GF KKP+ + ++ LL L + SI+ + NLE + + KGA
Sbjct: 68 QLQRHL-GF-KKPVNELRAASALNRLLVLCDNSISLVNMLNLEPVPSGARIKGAATFALN 125
Query: 118 -NVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVE-VKDFGVPDTVKSMSWCGENICIAIR 175
N S D +C KR I V+ VK+ + +++ G +C+A+
Sbjct: 126 ENPVSGDPFCVEVCIISVKRRTIQMFLVYEDRVQIVKEVSTAEQPLAVAVDGHFLCLALT 185
Query: 176 KGYMILNATNGALSEVFP-SGRIGPPLVVSLLSGELLL-GKENIGVFVDQNGKLLQADRI 233
Y+I N + G ++FP PP+V + E LL G +G+F G + Q +
Sbjct: 186 TQYIIHNYSTGVSQDLFPYCSEERPPIVKRIGRQEFLLAGPGGLGMFATVAG-ISQRAPV 244
Query: 234 CWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALEN 293
WSE I + PY IAL + V S+ + QT+ + L V+VA
Sbjct: 245 HWSENVIGAAVSFPYVIALDDEFITVHSM-LDQQQKQTLPFKEGHILQDFEGRVIVATSK 303
Query: 294 SIFGLFPVPLGAQIVQLTASGDFEEALALCK----LLPPEDASL--RAAKEGSIHIRFAH 347
++ L P+PL QI L AS EEAL L K +P E + R + + I+FA
Sbjct: 304 GVYILVPLPLEKQIQDLLASRRVEEALVLAKGARRNIPKEKFQVMYRRILQQAGFIQFAQ 363
Query: 348 YLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPSLSRGS 407
F EA E F + Q+D+ +SLYP +LP ++ S +R
Sbjct: 364 LQF-----LEAKELFRSGQLDVRELISLYP-FLLPTSS----------------SFTRSH 401
Query: 408 SGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEV 467
+ E + QL++ D+ K K+ L+ +L + RS+ + A G +E
Sbjct: 402 PPLH---EYADLNQLTQGDQEKMAKCKRF-------LMSYLNEVRSTEV----ANGYKED 447
Query: 468 VLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALEL 527
+ DTALL+ L + L+L
Sbjct: 448 I---------------------------------------DTALLK-LYAEADHDSLLDL 467
Query: 528 LKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQ 587
L N+C + L+K Y AL LY N + A++L +V N + T+
Sbjct: 468 LVTENFCLLTDSAAWLEKHKKYFALGLLYHYNNQDAAAVQLWVNIV-----NGDVQDSTR 522
Query: 588 KFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNI---------PADLV 638
E I+++L C D LV ++ VL+ +++F + P D++
Sbjct: 523 SDLYEYIVDFLT-YC-LDEELVWAYADWVLQKSEEVGVQVFTKRPLDEQQKNSFNPDDII 580
Query: 639 NSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKA 698
N LK+Y P +YLE L +++ + +YL EVL SA K E
Sbjct: 581 NC-LKKY-PKALVKYLE-HLVIDKRLQKEEYHTHLAVLYLEEVL--LQRASASGKGAEA- 634
Query: 699 YSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKV 755
+ T+ KL L+ Y LL+RL L E AIL GK+ +HE AL + VH++
Sbjct: 635 -TETQAKLRRLLQKSDLYRVHFLLERLQGAGLPMESAILHGKLGEHEKALHILVHEL 690
>sp|A7MB11|TGFA1_BOVIN Transforming growth factor-beta receptor-associated protein 1
OS=Bos taurus GN=TGFBRAP1 PE=2 SV=1
Length = 859
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 160/626 (25%), Positives = 256/626 (40%), Gaps = 118/626 (18%)
Query: 151 VKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFP-SGRIGPPLVVSLLSGE 209
V++ P+ +++ G +C+A+ Y+ILN + GA ++FP P+V + E
Sbjct: 161 VREVSTPEQPLAVAVDGHFLCLALTTQYIILNYSTGAAQDLFPFCSEERRPIVKRIGRQE 220
Query: 210 LLL-GKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYAL 268
LL G +G+F G + Q + WSE I + PY +AL + V S+ +
Sbjct: 221 FLLAGPGGLGMFATVAG-ISQRAPVRWSENVIGAAVCFPYVVALDDEFITVHSM-LDQQQ 278
Query: 269 IQTIVLQNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPP 328
QT+ + L V+VA ++ L P+PL +I L AS EEAL L K
Sbjct: 279 KQTLPFKEGHILQDFEGRVIVATSKGVYILVPLPLEKRIQDLLASHRVEEALVLAK---- 334
Query: 329 EDASLRAAKEGSIHIRFAHYLFDTG-------SYEEAMEHFLASQVDITYALSLYPSIVL 381
+ R + + + L G + +A E F + Q+D+ +SLYP ++L
Sbjct: 335 --GARRNIPKEKFQVMYRRILLQAGFIQFAQLQFLKAKELFRSGQLDVRELISLYP-LLL 391
Query: 382 PKTTVVPEPERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTL 441
P ++ S +R + E + QL++ D++ K K+
Sbjct: 392 PTSS----------------SFTRSHPPLH---EFADLNQLTQGDQDKVAKCKRF----- 427
Query: 442 MALIKFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAR 501
L+ +L + RS+ + A G +E +
Sbjct: 428 --LMSYLNEVRSTEV----ANGYKEDI--------------------------------- 448
Query: 502 EMAAILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNAR 561
DTALL+ L + L+LL N+C + L+K Y AL LY N +
Sbjct: 449 ------DTALLK-LYAEADHDSLLDLLVTENFCLLPDSAAWLEKHKKYFALGLLYHYNHQ 501
Query: 562 HREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCP 621
A++L +V N + T+ E I+++L TDP LV + VL+
Sbjct: 502 DAAAVQLWVSIV-----NGDIQDSTRSDLYEYIVDFLT--YSTDPDLVWRHADWVLQRSQ 554
Query: 622 TQTIELFL--------SGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEM 673
+++F SG P D++ S LK+Y P +YLE L +
Sbjct: 555 EVGVQVFTKRPLDEQQSGFNPDDII-SCLKKY-PQALVKYLE-HLVTERRLQKEEYHTHL 611
Query: 674 VQIYLSEVLDWYSDLSAQQK---WDEKA-YSPTRKKLLSALESISGYNPEVLLKRLPADA 729
+YL EVL QQ+ D+ A + T+ KL L+ Y L+ R
Sbjct: 612 AVLYLDEVL--------QQRPCTPDKDAEVTETQAKLRRLLQESDLYRVHFLMDRTRGAG 663
Query: 730 LYEERAILLGKMNQHELALSLYVHKV 755
L E AIL GK+ QHE AL + VH++
Sbjct: 664 LPLESAILHGKLEQHEEALHILVHEL 689
>sp|Q3UR70|TGFA1_MOUSE Transforming growth factor-beta receptor-associated protein 1
OS=Mus musculus GN=Tgfbrap1 PE=2 SV=1
Length = 860
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 182/711 (25%), Positives = 298/711 (41%), Gaps = 121/711 (17%)
Query: 72 GFSKKPILSMEVLASRQLLLSLSE-SIAFHRLPNLETIAVLTKAKGANVYSWDDR----R 126
GF KKP+ + ++ LL L + SI + NLE + + KGA ++ ++
Sbjct: 74 GF-KKPVNELCAASALNRLLVLCDNSITLVNMLNLEPVPSGARIKGATTFAVNESPVNGD 132
Query: 127 GF---LCFARQKR--VCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMIL 181
F +C KR V +F R + VK+ P+ +++ G +C+A+ Y+IL
Sbjct: 133 PFCVEVCIISVKRRTVQMFLVYEDRVQI-VKEVSTPEQPLAVAVDGYFLCLALTTQYIIL 191
Query: 182 NATNGALSEVFP-SGRIGPPLVVSLLSGELLL-GKENIGVFVDQNGKLLQADRICWSEAP 239
N + G ++FP PP+V + E LL G +G+F G + Q + WSE
Sbjct: 192 NYSTGLSQDLFPYCSEEKPPIVKRIGRQEFLLAGPGGLGMFATVAG-ISQRAPVHWSENV 250
Query: 240 IAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLF 299
I + PY IAL + V S+ + QT+ + L V+VA ++ L
Sbjct: 251 IGAAVCFPYVIALDDEFITVHSM-LDQQQKQTLPFKEGHILQDFEGRVIVATSKGVYILV 309
Query: 300 PVPLGAQIVQLTASGDFEEALALCK----LLPPEDASL--RAAKEGSIHIRFAHYLFDTG 353
P+PL QI L A+ EEAL L K +P E + R + + I+FA F
Sbjct: 310 PLPLEKQIQDLLANRRVEEALVLAKGARRNIPKEKFQVMYRRILQQAGFIQFAQLQF--- 366
Query: 354 SYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPSLSRGSSGMSDD 413
EA E F +SQ+D+ +SLYP +LP ++ S +R +
Sbjct: 367 --LEAKELFRSSQLDVRELISLYP-FLLPTSS----------------SFTRSHPPLH-- 405
Query: 414 MESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVG 473
E + QL++ D+ K K+ L+ +L + RS+ + A G +E +
Sbjct: 406 -EYADLNQLTQGDQEKMAKCKRF-------LMSYLNEIRSTEV----ANGYKEDI----- 448
Query: 474 DNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLNY 533
DTALL+ L + L+LL N+
Sbjct: 449 ----------------------------------DTALLK-LYAEADHDSLLDLLVTENF 473
Query: 534 CDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPES 593
C + L+K Y AL LY N + A++L +V N + T+ E
Sbjct: 474 CLLTDSAAWLEKHKKYFALGLLYHYNKQDASAVQLWVNIV-----NGDIQDSTRSDLYEY 528
Query: 594 IIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNI---------PADLVNSYLKQ 644
I+++L C D LV + +L+ +++F + P ++++S LK+
Sbjct: 529 IVDFLT-YC-LDQELVWTHADWLLQKSEEIGVQIFTKRPLDEQQQTSFNPDNIISS-LKK 585
Query: 645 YSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRK 704
Y P +YLE L ++ + +YL EVL + D +A + T+
Sbjct: 586 Y-PKALVKYLE-HLVIDRRLQKEEYHTHLAILYLEEVLRQRVSTGGK---DVEA-TETQA 639
Query: 705 KLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKV 755
KL L+ Y +L +++ L E AIL GK+ +HE AL + VH++
Sbjct: 640 KLRRLLQKSDLYRVHLLKEKVQGAGLPMESAILHGKLGEHEKALHILVHEM 690
>sp|O13955|VAM6_SCHPO Vacuolar morphogenesis protein 6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=vam6 PE=3 SV=1
Length = 905
Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 172/798 (21%), Positives = 319/798 (39%), Gaps = 105/798 (13%)
Query: 2 VHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRK 61
+H AF ++ +++ V G + + S+G L Y ++E + + +D+
Sbjct: 1 MHRAFSLYRVLELSKARVECVFELGGLVYVSNSNGDLDSYKIYNNEEEEA--ADFVMEHV 58
Query: 62 ESYELERTISGFSKKPILSMEVLASRQLLLSLSES-IAFHRLPNLETIAVLTKAKGANVY 120
+ Y F+KKPI + A++ + +LS+S + +++ + + A N+
Sbjct: 59 DVY------PNFTKKPITKVVSCATQDIFYALSDSQVYVYQISTFKKLFSF-GAHCQNMC 111
Query: 121 SWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGEN-ICIAIRKGYM 179
+ D + + +K + I+ K + D +S++W I +++ +
Sbjct: 112 LYGDE--LIVLSSKKNLEIYEIQKNSKPNLTKTISLNDRPRSLAWVSPTMILVSLSNDFC 169
Query: 180 ILNATNGALSEVFPSGRIGPPL-----------------VVSLLSGELLLGKENIGVFVD 222
+N +S + + + L + + E+LL K++ G+ V
Sbjct: 170 AVNTETSRISSLNLAWQQSSSLGLGISYIGMSIKSNKLHITRISDDEVLLSKDSQGLLV- 228
Query: 223 QNGKLLQADR--ICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHL 280
N K LQ R + W P AVI PY I L + + + + + YA+IQ I + N+
Sbjct: 229 -NLKSLQVSRNPLRWPTVPQAVIYNSPYIITLHNQYIYIWN-KETYAMIQQIGISNIYST 286
Query: 281 IPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALAL-----CKLLPPEDASLRA 335
+ ++ L P QI L + + EA+++ P D LR
Sbjct: 287 FSCHKNTFFTSNSYVWILTPEDFSNQIEALLNTENLNEAISVLSQITVSQFPKRDYYLRI 346
Query: 336 AKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLD 395
K A F +G Y+ AM F + L L+P ++ + +
Sbjct: 347 TKREK-----ALRSFSSGDYDLAMRLFSEISESPSTVLGLFPGLLDNNYS------DAIS 395
Query: 396 ISSDAPSLSRG--SSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRS 453
I S APS + S+ + S+ L D +T+ + K L +L +L R
Sbjct: 396 ILSMAPSQNESIESNVLFPGNHSNSQTDLRNGDAVSTVANNKR----LRSLSTYLTDSRR 451
Query: 454 SIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSK-----GRGTIPMYSGAREMAAILD 508
+ F S+D + K GT+ ++A +D
Sbjct: 452 K------------------ANRFLSYDEEHYFLQKKNLFLNADGTLVAKEKLEKIAVQID 493
Query: 509 TALLQALLLTGQSSAAL--ELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREAL 566
T L ++ SS AL LL+ N C+ + E L Y L+E Y + H AL
Sbjct: 494 TTLFLIYMI---SSPALVGSLLRLPNRCETSVVETNLLSAKMYRELVEYYYGKSLHEAAL 550
Query: 567 KLLHELVEE---SKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQ 623
LL +L +E + S + + T K+ P I+ YL+ L L+ ++S + L P
Sbjct: 551 DLLTKLCDEPTDTLSLKGKSNTTSKYEP--ILSYLEKLSPELDHLIFKYSRVPLSEDPQN 608
Query: 624 TIELFLSGN-----IPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYL 678
+I +F+ N I +V YL+ S + YLE +L N+ + + + +YL
Sbjct: 609 SIVIFIDENSEASTISKGVVLKYLETISYKVSIIYLEKLLLDNKFNDTV-FPTRLALLYL 667
Query: 679 SEVLDW--YSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPA--DALYEER 734
+L+ +D Q+ + T +KL L + Y+ V+L+ + + + L
Sbjct: 668 KRILELEETTDFKNQE-----VFKQTIEKLEDYLTNSKQYDANVVLQEINSQDEFLSTVS 722
Query: 735 AILLGKMNQHELALSLYV 752
IL ++++H+ AL +Y+
Sbjct: 723 IILYRRLSRHQDALDVYL 740
>sp|Q54EH3|Y1510_DICDI GTPase-activating protein DDB_G0291510 OS=Dictyostelium discoideum
GN=DDB_G0291510 PE=4 SV=1
Length = 1031
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 76/161 (47%), Gaps = 11/161 (6%)
Query: 111 LTKAKGANVYSWD--DRRG------FLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKS 162
+ KG VY + D G L +K + ++ + G FV+ ++ + D +K+
Sbjct: 699 IVGTKGCTVYGYTKGDNEGQEEDITLLYVGLKKTLLLYEWNKGE-FVKSRELPLMDNIKT 757
Query: 163 MSWCGEN-ICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFV 221
+ IC+ I+K +++++ + E++ P +SL E+LL NIG+FV
Sbjct: 758 LCAIAPGMICVGIQKEFLLIDIFTQTIKELYKKSDSEPVKALSL-DNEILLCFNNIGIFV 816
Query: 222 DQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSL 262
D++G + + W P ++ + Y + + +EVR+L
Sbjct: 817 DESGNKTRQFELKWGSTPSSLALVPSYVLGISGPLIEVRTL 857
>sp|Q07468|VAM6_YEAST Vacuolar morphogenesis protein 6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=VAM6 PE=1 SV=1
Length = 1049
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 104/237 (43%), Gaps = 34/237 (14%)
Query: 503 MAAILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARH 562
M ++DT L + L ++ N+CD + L+ ++ + L++ Y H
Sbjct: 599 MLTLIDTVLFKCYLYYNPPMVG-PFIRVENHCDSHVIVTELKIRHMFKDLIDFYYKRGNH 657
Query: 563 REALKLLHELVEESKSNQSQDEHTQKFNPES---IIEYLKPLCGTDPMLVLEFSMLVLES 619
EALK L +LV+E +++ + + QK + +I YLK L ++ ++ +L
Sbjct: 658 EEALKFLTDLVDELENDNTDQKQRQKIDHGVKILVIYYLKKLSNPQLDVIFTYTDWLLNR 717
Query: 620 CPTQTIELFLSGNIPAD----------LVNSYLKQYSPSMQGRYLELMLAMNENSISGN- 668
+I+ LS D V Y+K++ + +YLE A++ + GN
Sbjct: 718 -HNDSIKEILSSIFFYDSQACSSRDHLKVYGYIKKFDKLLAIQYLE--FAISTFRLEGNK 774
Query: 669 LQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRL 725
L ++++YL E LD S TR KL S LE+ S Y P +LK L
Sbjct: 775 LHTVLIKLYL-ENLDIPS---------------TRIKLKSLLETTSVYEPRTILKLL 815
>sp|Q6DT37|MRCKG_HUMAN Serine/threonine-protein kinase MRCK gamma OS=Homo sapiens
GN=CDC42BPG PE=1 SV=2
Length = 1551
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 23/227 (10%)
Query: 89 LLLSLSESIAFHRLPNLETIAV----LTKAKGANVYSWDD----RRGFLCFARQKRVCIF 140
+L S+ L LE I V + +++G V + R LC A +++V +
Sbjct: 1147 VLCGRGPSVRLFALAELENIEVAGAKIPESRGCQVLAAGSILQARTPVLCVAVKRQVLCY 1206
Query: 141 RHDGGRGFVE--VKDFGVPDTVKSMSWCGENICIAIRKGYMILNATN---------GALS 189
+ G G + +++ P TV+S+ G+ +C+ G+ + N G +
Sbjct: 1207 QLGPGPGPWQRRIRELQAPATVQSLGLLGDRLCVGAAGGFALYPLLNEAAPLALGAGLVP 1266
Query: 190 EVFPSGR--IGPPL-VVSLLSGELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQK 246
E P R +G L V L E LL G++VD G+ + + W AP+
Sbjct: 1267 EELPPSRGGLGEALGAVELSLSEFLLLFTTAGIYVDGAGRKSRGHELLWPAAPMGWGYAA 1326
Query: 247 PYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALEN 293
PY ++V +R +QT+ L+ VR L P + + E
Sbjct: 1327 PYLTVFSENSIDVFDVRR-AEWVQTVPLKKVRPLNPEGSLFLYGTEK 1372
>sp|Q9UTR5|RGF2_SCHPO Rho1 guanine nucleotide exchange factor 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rgf2 PE=1 SV=1
Length = 1158
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 26/196 (13%)
Query: 148 FVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFPSGRIG--------- 198
F EV+ +P S+ + +C+ KG+ I++ N +
Sbjct: 974 FTEVQ---MPMEALSVHFLKTKLCVGSFKGFDIISLENAVFQSLLNPADTSFRFLEKRED 1030
Query: 199 -PPLVVSLLSGELLLGKENIGVFVDQNG-KLLQADRICWSEAPIAVIIQKPYAIALLPRR 256
P+ + L GE LL + FV+ NG K Q+ I W P + PY +A P
Sbjct: 1031 IRPIAMFRLRGEFLLCYSDFAFFVNTNGWKSRQSWMINWEGQPQGCALCYPYILAFEPDF 1090
Query: 257 VEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDF 316
+E+R+ L+Q I+ QN++ L+ ++ ++ P+P +SG
Sbjct: 1091 IEIRNAETA-ELVQIIMGQNIK-LLTDGRGLISEGGEILYSTEPIPF--------SSG-- 1138
Query: 317 EEALALCKLLPPEDAS 332
E + +LPP +A+
Sbjct: 1139 ENPIVHSLILPPANAA 1154
>sp|Q80UW5|MRCKG_MOUSE Serine/threonine-protein kinase MRCK gamma OS=Mus musculus
GN=Cdc42bpg PE=2 SV=2
Length = 1551
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 15/183 (8%)
Query: 125 RRGFLCFARQKRVCIFRHDGGRGFVE--VKDFGVPDTVKSMSWCGENICIAIRKG---YM 179
R LC A +++V ++ G G + +++ P V+S+ G+ +C+ Y
Sbjct: 1190 RTPVLCVAVKRQVLCYQLGPGPGPWQRRIRELQAPAPVQSLGLLGDRLCVGAAGTFALYP 1249
Query: 180 ILNAT------NGALSEVFPSGR--IGPPL-VVSLLSGELLLGKENIGVFVDQNGKLLQA 230
+LN G ++E P+ R +G L V L ELLL GV+VD G+ ++
Sbjct: 1250 LLNEAAPLALGTGLVAEELPASRGGLGEALGAVELSLSELLLLFATAGVYVDSAGRKSRS 1309
Query: 231 DRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVA 290
+ W AP PY ++V +R +QT+ L+ VR L P + +
Sbjct: 1310 HELLWPAAPTGWGYTAPYLTVFSENALDVFDVRR-AEWVQTVPLKKVRPLNPEGSLFLYG 1368
Query: 291 LEN 293
E
Sbjct: 1369 TEK 1371
>sp|Q5VT25|MRCKA_HUMAN Serine/threonine-protein kinase MRCK alpha OS=Homo sapiens
GN=CDC42BPA PE=1 SV=1
Length = 1732
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 31/205 (15%)
Query: 111 LTKAKGAN-VYSWDDRRG---FLCFARQKRVCIF-------RHDGGRGFVEVKDFGVPDT 159
L++ KG V S R G LC A +++V + RH R F E++ VP
Sbjct: 1308 LSETKGCQTVTSGKVRHGALTCLCVAMKRQVLCYELFQSKTRH---RKFKEIQ---VPYN 1361
Query: 160 VKSMSWCGENICIAIRKG------------YMILNATNGALSEVFPSGRIGPPLVVSLLS 207
V+ M+ E +C+ + G Y +L++ + LS + V + S
Sbjct: 1362 VQWMAIFSEQLCVGFQSGFLRYPLNGEGNPYSMLHSNDHTLS-FIAHQPMDAICAVEISS 1420
Query: 208 GELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYA 267
E LL +IG++ D G+ + + W P + PY V++ +
Sbjct: 1421 KEYLLCFNSIGIYTDCQGRRSRQQELMWPANPSSCCYNAPYLSVYSENAVDIFDVN-SME 1479
Query: 268 LIQTIVLQNVRHLIPSSNAVVVALE 292
IQT+ L+ VR L + ++ LE
Sbjct: 1480 WIQTLPLKKVRPLNNEGSLNLLGLE 1504
>sp|Q9Y7U6|RGF1_SCHPO Rho1 guanine nucleotide exchange factor 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rgf1 PE=1 SV=1
Length = 1334
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 13/140 (9%)
Query: 151 VKDFGVPDTVKSMSWCGENICIAIRKGYMI-----------LNATNGALSEVFPSGRIGP 199
VK+ +P S+ + +C+ +G+ + L+ + +L V + P
Sbjct: 1146 VKELYIPTESTSVHFLKNKLCVGCTRGFEVVSLDNLETQSLLDPADTSLEFVEKKENVKP 1205
Query: 200 PLVVSLLSGELLLGKENIGVFVDQNG-KLLQADRICWSEAPIAVIIQKPYAIALLPRRVE 258
+ + GE LL +V+++G + + W +P + PY +A P +E
Sbjct: 1206 IAIYRMNGGEFLLCYSQFAFYVNRDGWRSRPTWFVVWEGSPQNFALSYPYILAFEPTFIE 1265
Query: 259 VRSLRVPYALIQTIVLQNVR 278
+R + LI I +N+R
Sbjct: 1266 IRHVETS-ELIHVISGRNIR 1284
>sp|Q3UU96|MRCKA_MOUSE Serine/threonine-protein kinase MRCK alpha OS=Mus musculus
GN=Cdc42bpa PE=1 SV=2
Length = 1719
Score = 42.4 bits (98), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 129 LCFARQKRVCIF-------RHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMI- 180
LC A +++V + RH R F E++ VP V+ M+ E++C+ + G++
Sbjct: 1317 LCVAMKRQVLCYELFQSKTRH---RKFKEIQ---VPCNVQWMAIFSEHLCVGFQSGFLRY 1370
Query: 181 -LNATNGALSEVFPSGRI-----GPPL----VVSLLSGELLLGKENIGVFVDQNGKLLQA 230
LN G + + + P+ V + + E LL +IG++ D G+ +
Sbjct: 1371 PLNGEGGPCNMLHSNDHTLSFISHQPMDALCAVEISNKEYLLCFNSIGIYTDCQGRRSRQ 1430
Query: 231 DRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVA 290
+ W P + PY V++ + IQT+ L+ VR L + ++
Sbjct: 1431 QELMWPANPSSCCYNAPYLSVYSENAVDIFDVN-SMEWIQTLPLKKVRPLNTEGSLNLLG 1489
Query: 291 LE 292
LE
Sbjct: 1490 LE 1491
>sp|P51862|ROM2_YEAST RHO1 GDP-GTP exchange protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ROM2 PE=1 SV=1
Length = 1356
Score = 41.6 bits (96), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 11/142 (7%)
Query: 162 SMSWCGENICIAIRKGYMILNATNGALSEVFPSGRIG---------PPLVVSLLSGELLL 212
S+S+ N+CI +KG+ I++ + A + P+ + + LL
Sbjct: 1202 SISFLKANLCIGCKKGFQIVSISQNAHESLLDPADTSLEFALRDTLKPMAIYRVGNMFLL 1261
Query: 213 GKENIGVFVDQNG-KLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQT 271
FV+ G + ++ I W P I PY +A +E+R + LI+
Sbjct: 1262 CYTEFAFFVNNQGWRKKESHIIHWEGEPQKFAIWYPYILAFDSNFIEIRKIETG-ELIRC 1320
Query: 272 IVLQNVRHLIPSSNAVVVALEN 293
++ +R L S+ ++ E+
Sbjct: 1321 VLADKIRLLQTSTQEILYCYED 1342
>sp|O54874|MRCKA_RAT Serine/threonine-protein kinase MRCK alpha OS=Rattus norvegicus
GN=Cdc42bpa PE=1 SV=1
Length = 1732
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 31/185 (16%)
Query: 129 LCFARQKRVCIF-------RHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYM-- 179
LC A +++V + RH R F E++ VP V+ M+ E++C+ + G++
Sbjct: 1330 LCVAMKRQVLCYELFQSKTRH---RKFKEIQ---VPCNVQWMAIFSEHLCVGFQSGFLRY 1383
Query: 180 ----------ILNATNGALSEVF--PSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKL 227
+L++ + L+ + P I V + + E LL +IG++ D G+
Sbjct: 1384 PLNGEGSPCNMLHSNDHTLAFITHQPMDAI---CAVEISNKEYLLCFSSIGIYTDCQGRR 1440
Query: 228 LQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAV 287
+ + W P + PY V++ + IQT+ L+ VR L +
Sbjct: 1441 SRQQELMWPANPSSCCYNAPYLSIYSENAVDIFDVN-SMEWIQTLPLKKVRPLNTEGSLN 1499
Query: 288 VVALE 292
++ LE
Sbjct: 1500 LLGLE 1504
>sp|Q9Y5S2|MRCKB_HUMAN Serine/threonine-protein kinase MRCK beta OS=Homo sapiens GN=CDC42BPB
PE=1 SV=2
Length = 1711
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 26/170 (15%)
Query: 125 RRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNAT 184
+R LC+ Q R F R F E+ P +V+ ++ + +C+ G+ +L+
Sbjct: 1349 KRLILCYEIQ-RTKPFH----RKFNEI---VAPGSVQCLAVLRDRLCVGYPSGFCLLSIQ 1400
Query: 185 NGA--LSEVFPSGRIGPPLV------------VSLLSGELLLGKENIGVFVDQNGKLLQA 230
L+ V P+ P L V L S E LL ++G++VD G+ +A
Sbjct: 1401 GDGQPLNLVNPND---PSLAFLSQQSFDALCAVELESEEYLLCFSHMGLYVDPQGRRARA 1457
Query: 231 DRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHL 280
+ W AP+A + V+V +R +QTI L+ +R L
Sbjct: 1458 QELMWPAAPVACSCSPTHVTVYSEYGVDVFDVRT-MEWVQTIGLRRIRPL 1506
>sp|O74319|TAF73_SCHPO Transcription initiation factor TFIID subunit taf73
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf73 PE=1 SV=1
Length = 642
Score = 38.1 bits (87), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 2 VHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRK 61
+HN ++ NC+ D + + L GC+D S+ +YS ++ S + L+K
Sbjct: 345 MHNTLSAV----NCAAFSDDASMFAL----GCADSSIHLYSSTNNGPQPLVGSQNEPLQK 396
Query: 62 ESYELERTISGFSKKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVYS 121
S + G + +P+ + + ++ +LS SE F RL + +T + + K G N
Sbjct: 397 SS------LIGHT-RPVFGVSISPQKEFILSCSED-GFTRLWSKDTKSTIVKYAGHNAPI 448
Query: 122 WD 123
WD
Sbjct: 449 WD 450
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 37.7 bits (86), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 591 PESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQ 650
P+ E LK L P+L +EF LV CP + FL I L S L P
Sbjct: 99 PDEASEILKSL--NSPLLAVEFFKLVPSLCPYSQNDPFLYNRIILILSRSNL----PDRF 152
Query: 651 GRYLELMLAMNENSISGNLQNEMVQI-YLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSA 709
R ++ +M ++++ GN+ + I + D L +KWD K S T K LL A
Sbjct: 153 DRVRSILDSMVKSNVHGNISTVNILIGFFGNTEDLQMCLRLVKKWDLKMNSFTYKCLLQA 212
>sp|P49025|CTRO_MOUSE Citron Rho-interacting kinase OS=Mus musculus GN=Cit PE=1 SV=3
Length = 2055
Score = 37.7 bits (86), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 72/177 (40%), Gaps = 21/177 (11%)
Query: 93 LSESIAFHRLPNLETIA--VLTKAKGANVYSWDDRRGFLCF--ARQKRVCIFRH-DGGRG 147
+ +S+A LP ++ + KG ++++ LC A +V I R+ D
Sbjct: 1688 VKQSLAQSHLPAQPDVSPNIFEAVKGCHLFAAGKIENSLCICAAMPSKVVILRYNDNLSK 1747
Query: 148 FVEVKDFGVPDTVKSMSWCGENICIAIRKGYMI----------LNATNGALS-EVFPSGR 196
+ K+ + + + +I I K Y I L+ + +L+ VF S
Sbjct: 1748 YCIRKEIETSEPCSCIHFTNYSILIGTNKFYEIDMKQYTLDEFLDKNDHSLAPAVFASSS 1807
Query: 197 IGPPLVVSLLSG-----ELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPY 248
P+ + + E LL GVFVD G+ + D + WS P+A ++PY
Sbjct: 1808 NSFPVSIVQANSAGQREEYLLCFHEFGVFVDSYGRRSRTDDLKWSRLPLAFAYREPY 1864
>sp|Q7TT49|MRCKB_RAT Serine/threonine-protein kinase MRCK beta OS=Rattus norvegicus
GN=Cdc42bpb PE=1 SV=1
Length = 1713
Score = 37.7 bits (86), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 26/170 (15%)
Query: 125 RRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNAT 184
+R LC+ Q R F R F E+ P V+ M+ + +C+ G+ +L+
Sbjct: 1351 KRLVLCYEIQ-RTKPFH----RKFNEIV---APGHVQWMAMFKDRLCVGYPSGFSLLSIQ 1402
Query: 185 NGA--LSEVFPSGRIGPPLV------------VSLLSGELLLGKENIGVFVDQNGKLLQA 230
L V P+ P L V L S E LL ++G++VD G+ +
Sbjct: 1403 GDGQPLDLVNPAD---PSLAFLSQQSFDALCAVELKSEEYLLCFSHMGLYVDPQGRRSRT 1459
Query: 231 DRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHL 280
+ W AP+A + V+V +R +QTI L+ +R L
Sbjct: 1460 QELMWPAAPVACSCSSSHVTVYSEYGVDVFDVRT-MEWVQTIGLRRIRPL 1508
>sp|Q7TT50|MRCKB_MOUSE Serine/threonine-protein kinase MRCK beta OS=Mus musculus GN=Cdc42bpb
PE=1 SV=2
Length = 1713
Score = 37.4 bits (85), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 22/203 (10%)
Query: 125 RRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMIL--- 181
+R LC+ Q+ R + + P V+ M+ + +C+ G+ +L
Sbjct: 1351 KRLILCYEIQRTKPFHR--------KFSELVAPGHVQWMAVFKDRLCVGYPSGFSLLSIQ 1402
Query: 182 ---------NATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADR 232
N T+ +L+ V L S E LL ++G++VD G+ +
Sbjct: 1403 GDGPPLDLVNPTDPSLA-FLSQQSFDALCAVELKSEEYLLCFSHMGLYVDPQGRRSRMQE 1461
Query: 233 ICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALE 292
+ W AP+A + V+V +R +QTI L+ +R L + ++ E
Sbjct: 1462 LMWPAAPVACSCSPTHVTVYSEYGVDVFDVRT-MEWVQTIGLRRIRPLNSDGSLNLLGCE 1520
Query: 293 NSIFGLFPVPLGAQIVQLTASGD 315
F I+ + + D
Sbjct: 1521 PPRLIYFKNKFSGTILNVPDTSD 1543
>sp|O14578|CTRO_HUMAN Citron Rho-interacting kinase OS=Homo sapiens GN=CIT PE=1 SV=2
Length = 2027
Score = 36.6 bits (83), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 21/177 (11%)
Query: 93 LSESIAFHRLPNLETIA--VLTKAKGANVYSWDDRRGFLCF--ARQKRVCIFRHDGG-RG 147
+ +S+A LP I+ + KG +++ LC A +V I R++
Sbjct: 1662 VKQSLAQSHLPAQPDISPNIFEAVKGCHLFGAGKIENGLCICAAMPSKVVILRYNENLSK 1721
Query: 148 FVEVKDFGVPDTVKSMSWCGENICIAIRKGYMI----------LNATNGALS-EVFPSGR 196
+ K+ + + + +I I K Y I L+ + +L+ VF +
Sbjct: 1722 YCIRKEIETSEPCSCIHFTNYSILIGTNKFYEIDMKQYTLEEFLDKNDHSLAPAVFAASS 1781
Query: 197 IGPPLVVSLLSG-----ELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPY 248
P+ + ++ E LL GVFVD G+ + D + WS P+A ++PY
Sbjct: 1782 NSFPVSIVQVNSAGQREEYLLCFHEFGVFVDSYGRRSRTDDLKWSRLPLAFAYREPY 1838
>sp|Q5UQC0|YL226_MIMIV Uncharacterized protein L226 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L226 PE=4 SV=1
Length = 690
Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 32/206 (15%)
Query: 530 GLNYCDVKICEEILQK--------KNHYTALLELYKSNARHREALKLLHELVEESKSN-- 579
GLN +C+ ++QK N+ L+ LY N E L + +E K +
Sbjct: 140 GLNSGKFNLCDVLIQKGIEYKCTDHNYGRPLIVLYPDNGEIEEIYLYLLKNMEHFKDDFV 199
Query: 580 ---QSQDEHTQKFNP-ESIIEYLKPLCGTDPMLVLEFSMLVLE-SCPTQTIELFLSGNIP 634
Q+ E + +F+ +S IEY + C P+ LE S+ +++ T+ I+LF I
Sbjct: 200 KIIQAVTEDSYEFDVLKSYIEYAQ--CTNIPINYLEISINIIKIHHKTECIKLF----IE 253
Query: 635 ADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKW 694
LVN+ Q + E L ++ ++G L ++ V+ S+V L + +
Sbjct: 254 MGLVNA---------QDIFYESCLHFSD--LTGYLVDQGVEFNFSDVFSLDLPLDTLEYF 302
Query: 695 DEKAYSPTRKKLLSALESISGYNPEV 720
EK + PT + +++ L + P++
Sbjct: 303 TEKGFEPTDEMIVNKLNDSNKSTPKI 328
>sp|Q66K99|GTDC1_XENTR Glycosyltransferase-like domain-containing protein 1 OS=Xenopus
tropicalis GN=gtdc1 PE=2 SV=1
Length = 437
Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 379 IVLPKTTVVPEPERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSH 438
I+ PK V+ P DIS P R S ++D+M S + + A S + SH
Sbjct: 155 IIRPKCCVLYFPMTFPDISQFLPEHKRVSHTLADNMSSMDISHCPKTSLQAENMSVEFSH 214
Query: 439 NTLMALI--KFLQKKRSSIIEKATAEGTEEVVLDA 471
+ + + I +++R++I EK + V+L+A
Sbjct: 215 DQIQSSIGESSAEQERATISEKNICASGDPVILNA 249
>sp|O29043|Y1225_ARCFU Uncharacterized protein AF_1225 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_1225 PE=4 SV=1
Length = 212
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 11 LISNCSPKIDAV-ASYGLKILLGCSDGSLKIYSPGS--SESDRSPPS-DYQ----SLRKE 62
+ N P I+A Y +KI + C+ G ++Y+ GS ++ D + + DYQ SL KE
Sbjct: 40 FVDNLQPSINATPGEYEVKIGINCTPGLKEVYADGSVLAQIDVNETTIDYQAYAASLEKE 99
Query: 63 SYELERTISGFSKKPILSME 82
+ L++ + +K +S E
Sbjct: 100 NLALQKEVESLKEKLKISQE 119
>sp|Q9EPX2|PPN_MOUSE Papilin OS=Mus musculus GN=Papln PE=2 SV=2
Length = 1280
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 601 LCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAM 660
L G++P LV ++ P Q ++LF GNIP++ + K+ P RY L
Sbjct: 906 LAGSEPSLV--------QAAPGQAVQLFCPGNIPSEFQAGWQKEGRPISSNRY---QLQA 954
Query: 661 NENSISGNLQNEMVQIY 677
+ + I L+ E IY
Sbjct: 955 DGSLIISRLRPEDAGIY 971
>sp|Q037U3|THIT_LACC3 Thiamine transporter ThiT OS=Lactobacillus casei (strain ATCC 334)
GN=thiT PE=1 SV=1
Length = 201
Score = 33.5 bits (75), Expect = 7.5, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 14/135 (10%)
Query: 241 AVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFP 300
A+I A+ +P V ++ + Y LI VL R L+P+ A ++G+
Sbjct: 14 AIIAAFAMALTYIPHTTGVSAIELNYGLIPIAVLAMRRGLVPA------AWAGFVWGILD 67
Query: 301 VPL-----GAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFD---T 352
+ L G+ + L ++ A L L+ AS + A GS ++ + Y F
Sbjct: 68 LILRGIGGGSVLNPLQGILEYPIAFTLVGLMGLTFASFQKAVRGSEKVKASGYAFAGIII 127
Query: 353 GSYEEAMEHFLASQV 367
G++ + HF+A V
Sbjct: 128 GTFAKYFIHFIAGVV 142
>sp|A6LQJ1|SECA_CLOB8 Protein translocase subunit SecA OS=Clostridium beijerinckii
(strain ATCC 51743 / NCIMB 8052) GN=secA PE=3 SV=1
Length = 855
Score = 33.1 bits (74), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 15/164 (9%)
Query: 564 EALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSML------VL 617
E L L E ESK E+ QK + + K L G D ++ ++ ++ VL
Sbjct: 559 EKLGLQEEEAIESKMVSKAIENAQKKVEGNNFDIRKQLLGYDDVMNIQREVIYKQRSEVL 618
Query: 618 ESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSIS---------GN 668
E + L ++ +I AD VN+Y+ S + +L LM+A+ + I+ N
Sbjct: 619 EGEDVKEEILSMTKDIIADAVNTYVTGESEDYREEFLHLMVALQDICIAPGTVNLPSLEN 678
Query: 669 LQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALES 712
L NE + L E + + ++ E+ R LL A+++
Sbjct: 679 LSNEEIIESLFESARKFYEHKEEEFGAERLREVERVVLLRAVDT 722
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 283,384,964
Number of Sequences: 539616
Number of extensions: 11537081
Number of successful extensions: 33157
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 33080
Number of HSP's gapped (non-prelim): 69
length of query: 823
length of database: 191,569,459
effective HSP length: 126
effective length of query: 697
effective length of database: 123,577,843
effective search space: 86133756571
effective search space used: 86133756571
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)