Query 003405
Match_columns 823
No_of_seqs 222 out of 891
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 00:07:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xi4_A Clathrin heavy chain; a 99.0 3.1E-08 1.1E-12 121.3 23.6 327 303-778 1052-1419(1630)
2 1sq9_A Antiviral protein SKI8; 98.6 9E-06 3.1E-10 88.9 27.4 249 9-273 9-330 (397)
3 3zwl_B Eukaryotic translation 98.6 5.9E-05 2E-09 80.9 33.5 237 16-274 32-313 (369)
4 1b89_A Protein (clathrin heavy 98.6 6.6E-07 2.2E-11 98.9 15.7 223 506-778 95-346 (449)
5 3mkq_A Coatomer beta'-subunit; 98.5 0.0028 9.6E-08 76.2 46.9 151 17-186 185-387 (814)
6 1gxr_A ESG1, transducin-like e 98.5 0.00012 4.2E-09 77.4 29.6 188 15-223 96-294 (337)
7 3ow8_A WD repeat-containing pr 98.4 0.0002 6.9E-09 76.5 31.4 235 16-273 32-287 (321)
8 3v7d_B Cell division control p 98.4 0.0003 1E-08 78.8 33.6 259 18-299 124-418 (464)
9 1xi4_A Clathrin heavy chain; a 98.4 1.4E-05 4.9E-10 98.3 23.5 229 506-773 1315-1560(1630)
10 4aez_A CDC20, WD repeat-contai 98.4 0.00019 6.5E-09 79.0 30.3 232 18-274 95-345 (401)
11 3mmy_A MRNA export factor; mRN 98.4 0.00012 4.1E-09 78.4 28.0 247 7-274 30-313 (368)
12 1yfq_A Cell cycle arrest prote 98.3 0.00023 7.8E-09 75.7 28.4 244 13-274 8-291 (342)
13 4ery_A WD repeat-containing pr 98.3 0.00085 2.9E-08 70.7 32.4 231 16-274 23-277 (312)
14 3mkq_A Coatomer beta'-subunit; 98.3 0.00037 1.3E-08 84.1 32.8 238 14-275 11-269 (814)
15 1sq9_A Antiviral protein SKI8; 98.3 0.00014 4.6E-09 79.4 26.1 193 14-223 60-320 (397)
16 1vyh_C Platelet-activating fac 98.3 0.00073 2.5E-08 74.8 32.2 234 16-274 108-378 (410)
17 1r5m_A SIR4-interacting protei 98.3 0.00022 7.5E-09 78.0 27.6 244 17-275 46-329 (425)
18 2ovr_B FBW7, F-BOX/WD repeat p 98.3 0.00051 1.7E-08 76.6 30.8 187 75-273 199-399 (445)
19 1gxr_A ESG1, transducin-like e 98.3 0.00077 2.6E-08 71.1 30.5 236 16-274 51-305 (337)
20 1k8k_C P40, ARP2/3 complex 41 98.3 0.00019 6.7E-09 77.2 26.0 229 16-263 8-273 (372)
21 1r5m_A SIR4-interacting protei 98.2 0.00019 6.5E-09 78.6 25.8 224 17-267 109-363 (425)
22 3dw8_B Serine/threonine-protei 98.2 0.00062 2.1E-08 75.4 29.8 243 17-269 29-377 (447)
23 2xzm_R RACK1; ribosome, transl 98.2 0.0012 4.2E-08 70.8 31.1 241 13-269 18-289 (343)
24 1b89_A Protein (clathrin heavy 98.2 5.8E-05 2E-09 83.5 20.4 201 506-745 242-449 (449)
25 2ynn_A Coatomer subunit beta'; 98.2 0.0012 4.3E-08 69.4 30.4 237 15-275 12-269 (304)
26 3frx_A Guanine nucleotide-bind 98.2 0.00063 2.1E-08 72.4 28.1 241 13-272 14-274 (319)
27 2ovr_B FBW7, F-BOX/WD repeat p 98.2 0.0011 3.9E-08 73.7 31.3 226 18-274 121-357 (445)
28 3jrp_A Fusion protein of prote 98.2 0.00041 1.4E-08 74.6 26.7 234 13-263 8-286 (379)
29 3k26_A Polycomb protein EED; W 98.2 0.00018 6.1E-09 77.1 23.1 152 17-187 70-262 (366)
30 1p22_A F-BOX/WD-repeat protein 98.2 0.00084 2.9E-08 74.7 28.9 220 17-263 134-364 (435)
31 3dm0_A Maltose-binding peripla 98.1 0.00082 2.8E-08 79.8 30.3 241 16-273 382-640 (694)
32 3vl1_A 26S proteasome regulato 98.1 0.0022 7.4E-08 70.4 31.5 228 18-264 98-365 (420)
33 4gqb_B Methylosome protein 50; 98.1 0.00046 1.6E-08 74.6 25.4 227 18-263 84-330 (344)
34 4a11_B DNA excision repair pro 98.1 0.003 1E-07 68.5 32.1 245 15-274 42-332 (408)
35 4aez_A CDC20, WD repeat-contai 98.1 0.00036 1.2E-08 76.8 24.5 188 15-223 175-378 (401)
36 2aq5_A Coronin-1A; WD40 repeat 98.1 0.0012 4.1E-08 72.5 28.2 231 18-267 36-301 (402)
37 1pby_B Quinohemoprotein amine 98.1 0.0014 4.8E-08 69.2 27.2 145 27-194 2-172 (337)
38 3odt_A Protein DOA1; ubiquitin 98.0 0.011 3.9E-07 61.3 33.5 235 12-277 14-267 (313)
39 1vyh_C Platelet-activating fac 98.0 0.00092 3.2E-08 73.9 25.9 223 16-261 150-408 (410)
40 1got_B GT-beta; complex (GTP-b 98.0 0.00056 1.9E-08 73.4 23.0 175 16-212 143-328 (340)
41 3lvg_A Clathrin heavy chain 1; 98.0 2.4E-07 8.3E-12 100.9 -3.8 230 506-779 117-369 (624)
42 1l0q_A Surface layer protein; 98.0 0.0035 1.2E-07 68.0 29.1 246 28-300 4-273 (391)
43 4ery_A WD repeat-containing pr 98.0 0.0038 1.3E-07 65.5 28.6 187 16-224 65-267 (312)
44 4g56_B MGC81050 protein; prote 98.0 0.00093 3.2E-08 72.4 24.0 230 17-263 95-342 (357)
45 2pm9_A Protein WEB1, protein t 98.0 0.0014 4.7E-08 71.7 25.6 228 16-263 67-336 (416)
46 4aow_A Guanine nucleotide-bind 98.0 0.0061 2.1E-07 64.3 29.9 241 16-273 38-294 (340)
47 3ei3_B DNA damage-binding prot 98.0 0.013 4.3E-07 63.5 32.9 236 13-274 70-348 (383)
48 3zwl_B Eukaryotic translation 97.9 0.0024 8E-08 68.2 26.1 175 16-213 74-276 (369)
49 1p22_A F-BOX/WD-repeat protein 97.9 0.00071 2.4E-08 75.3 22.5 221 16-264 173-414 (435)
50 3vl1_A 26S proteasome regulato 97.9 0.005 1.7E-07 67.4 29.0 231 21-274 63-332 (420)
51 1l0q_A Surface layer protein; 97.9 0.0031 1.1E-07 68.5 27.0 231 17-275 32-285 (391)
52 1k8k_C P40, ARP2/3 complex 41 97.9 0.0021 7.2E-08 68.9 25.2 192 15-223 51-272 (372)
53 1yfq_A Cell cycle arrest prote 97.9 0.0011 3.9E-08 70.2 22.7 149 16-186 56-226 (342)
54 3f3f_A Nucleoporin SEH1; struc 97.9 0.0031 1.1E-07 66.3 25.9 164 14-187 55-251 (351)
55 3odt_A Protein DOA1; ubiquitin 97.9 0.0011 3.8E-08 69.1 22.2 184 16-224 104-295 (313)
56 4e54_B DNA damage-binding prot 97.9 0.007 2.4E-07 67.2 29.4 188 15-223 118-325 (435)
57 3f3f_A Nucleoporin SEH1; struc 97.9 0.0057 1.9E-07 64.2 27.2 198 11-223 6-247 (351)
58 3jro_A Fusion protein of prote 97.8 0.0011 3.7E-08 79.7 23.7 235 12-263 5-284 (753)
59 2vdu_B TRNA (guanine-N(7)-)-me 97.8 0.0097 3.3E-07 66.3 29.7 214 76-291 103-371 (450)
60 1erj_A Transcriptional repress 97.8 0.0069 2.4E-07 66.3 27.9 151 18-187 125-289 (393)
61 3v7d_B Cell division control p 97.8 0.002 6.7E-08 72.0 24.0 152 15-190 269-426 (464)
62 3ow8_A WD repeat-containing pr 97.8 0.0059 2E-07 64.9 26.5 186 16-223 80-277 (321)
63 3bws_A Protein LP49; two-domai 97.8 0.0031 1.1E-07 69.5 25.2 172 17-212 170-360 (433)
64 2pbi_B Guanine nucleotide-bind 97.8 0.0026 9E-08 68.7 24.1 177 17-212 155-342 (354)
65 3dwl_C Actin-related protein 2 97.8 0.0011 3.7E-08 71.7 21.0 193 16-224 55-280 (377)
66 2ynn_A Coatomer subunit beta'; 97.8 0.0059 2E-07 64.2 26.2 225 17-263 56-301 (304)
67 3dwl_C Actin-related protein 2 97.8 0.00021 7.1E-09 77.5 15.1 154 16-186 11-178 (377)
68 3bws_A Protein LP49; two-domai 97.8 0.0047 1.6E-07 68.0 26.3 256 19-298 125-428 (433)
69 1got_B GT-beta; complex (GTP-b 97.8 0.037 1.3E-06 58.9 32.7 232 16-273 55-309 (340)
70 3sfz_A APAF-1, apoptotic pepti 97.8 0.0018 6E-08 82.3 25.6 233 17-273 962-1215(1249)
71 1jmx_B Amine dehydrogenase; ox 97.8 0.0065 2.2E-07 64.4 26.3 149 27-194 12-184 (349)
72 2aq5_A Coronin-1A; WD40 repeat 97.8 0.0031 1E-07 69.1 24.3 193 16-223 81-297 (402)
73 3lrv_A PRE-mRNA-splicing facto 97.8 0.0032 1.1E-07 67.4 23.6 147 75-223 125-290 (343)
74 2ymu_A WD-40 repeat protein; u 97.8 0.018 6.1E-07 66.0 31.3 230 16-273 16-259 (577)
75 3k26_A Polycomb protein EED; W 97.8 0.0092 3.1E-07 63.5 27.0 159 14-187 16-194 (366)
76 3frx_A Guanine nucleotide-bind 97.7 0.002 6.9E-08 68.4 20.8 151 17-186 149-318 (319)
77 2ymu_A WD-40 repeat protein; u 97.7 0.058 2E-06 61.6 34.7 231 16-274 262-506 (577)
78 3jrp_A Fusion protein of prote 97.7 0.0071 2.4E-07 64.7 25.1 191 15-222 54-284 (379)
79 3i2n_A WD repeat-containing pr 97.7 0.0028 9.6E-08 67.4 21.6 152 16-188 65-246 (357)
80 1pgu_A Actin interacting prote 97.7 0.0087 3E-07 69.0 27.2 238 16-275 18-293 (615)
81 3vgz_A Uncharacterized protein 97.7 0.02 6.9E-07 60.7 28.0 240 25-291 51-332 (353)
82 3dw8_B Serine/threonine-protei 97.6 0.004 1.4E-07 68.8 22.5 208 17-224 94-372 (447)
83 3fm0_A Protein CIAO1; WDR39,SG 97.6 0.0068 2.3E-07 65.0 23.6 194 3-212 2-210 (345)
84 3ei3_B DNA damage-binding prot 97.6 0.007 2.4E-07 65.5 23.6 185 17-222 164-379 (383)
85 2pm9_A Protein WEB1, protein t 97.6 0.0025 8.4E-08 69.7 20.0 198 16-225 113-337 (416)
86 1pgu_A Actin interacting prote 97.6 0.027 9.3E-07 64.7 29.8 239 16-273 63-336 (615)
87 3dsm_A Uncharacterized protein 97.6 0.022 7.6E-07 60.6 26.8 231 17-275 44-311 (328)
88 2xyi_A Probable histone-bindin 97.6 0.0071 2.4E-07 67.1 23.6 162 16-186 128-310 (430)
89 2vdu_B TRNA (guanine-N(7)-)-me 97.6 0.0055 1.9E-07 68.3 22.8 142 16-176 195-373 (450)
90 3lvg_A Clathrin heavy chain 1; 97.6 4.3E-05 1.5E-09 83.6 4.6 230 506-774 264-510 (624)
91 4aow_A Guanine nucleotide-bind 97.5 0.0051 1.7E-07 64.9 20.9 153 16-187 171-339 (340)
92 4g56_B MGC81050 protein; prote 97.5 0.051 1.8E-06 58.5 28.9 239 17-276 43-312 (357)
93 2hes_X YDR267CP; beta-propelle 97.5 0.019 6.6E-07 61.0 25.2 160 11-186 9-185 (330)
94 4gqb_B Methylosome protein 50; 97.5 0.011 3.6E-07 63.7 22.9 185 17-224 128-330 (344)
95 3lrv_A PRE-mRNA-splicing facto 97.5 0.0042 1.4E-07 66.5 19.6 152 17-186 126-293 (343)
96 3sfz_A APAF-1, apoptotic pepti 97.5 0.015 5E-07 73.8 27.5 177 16-212 699-898 (1249)
97 2pbi_B Guanine nucleotide-bind 97.5 0.17 5.7E-06 54.2 32.4 232 16-273 64-323 (354)
98 1nr0_A Actin interacting prote 97.5 0.062 2.1E-06 62.5 30.7 189 17-225 148-397 (611)
99 1ri6_A Putative isomerase YBHE 97.5 0.022 7.7E-07 59.8 24.5 229 18-262 39-306 (343)
100 1ri6_A Putative isomerase YBHE 97.4 0.079 2.7E-06 55.5 28.4 249 26-291 4-295 (343)
101 2oaj_A Protein SNI1; WD40 repe 97.4 0.012 4.1E-07 72.2 24.6 191 15-227 16-245 (902)
102 3gre_A Serine/threonine-protei 97.4 0.021 7.3E-07 62.9 24.5 239 16-273 63-367 (437)
103 1erj_A Transcriptional repress 97.3 0.24 8.3E-06 53.7 31.9 251 17-273 65-349 (393)
104 2xzm_R RACK1; ribosome, transl 97.3 0.026 8.9E-07 60.2 23.4 153 16-188 118-288 (343)
105 3i2n_A WD repeat-containing pr 97.3 0.012 4.2E-07 62.3 20.7 161 15-189 110-295 (357)
106 3dm0_A Maltose-binding peripla 97.3 0.012 4.1E-07 69.7 22.5 157 16-191 472-638 (694)
107 3jro_A Fusion protein of prote 97.3 0.013 4.6E-07 70.2 22.9 192 16-224 53-284 (753)
108 3mmy_A MRNA export factor; mRN 97.3 0.0097 3.3E-07 63.2 19.1 178 16-213 86-332 (368)
109 3gre_A Serine/threonine-protei 97.3 0.0038 1.3E-07 69.0 16.3 159 16-192 168-366 (437)
110 2pm7_B Protein transport prote 97.3 0.056 1.9E-06 56.3 24.5 155 16-187 9-191 (297)
111 3iz6_a 40S ribosomal protein R 97.2 0.012 4.1E-07 64.0 19.7 153 17-187 206-377 (380)
112 4a11_B DNA excision repair pro 97.2 0.03 1E-06 60.4 22.3 188 16-222 141-362 (408)
113 2xyi_A Probable histone-bindin 97.2 0.026 8.8E-07 62.5 22.0 156 16-185 181-353 (430)
114 3vgz_A Uncharacterized protein 97.2 0.12 4.2E-06 54.4 26.5 218 76-300 41-301 (353)
115 2hes_X YDR267CP; beta-propelle 97.1 0.066 2.3E-06 56.7 23.4 158 16-186 58-231 (330)
116 3fm0_A Protein CIAO1; WDR39,SG 97.0 0.029 1E-06 60.0 19.0 151 16-184 61-224 (345)
117 3iz6_a 40S ribosomal protein R 97.0 0.056 1.9E-06 58.6 21.5 194 18-225 159-375 (380)
118 1nr0_A Actin interacting prote 97.0 0.83 2.8E-05 52.8 32.9 232 16-272 59-320 (611)
119 4h5i_A Guanine nucleotide-exch 96.9 0.18 6.1E-06 54.3 25.4 232 16-263 73-342 (365)
120 1nir_A Nitrite reductase; hemo 96.9 0.33 1.1E-05 55.6 28.8 250 26-302 149-458 (543)
121 4h5i_A Guanine nucleotide-exch 96.9 0.067 2.3E-06 57.8 21.7 184 20-223 139-341 (365)
122 4gga_A P55CDC, cell division c 96.9 0.16 5.5E-06 55.7 24.9 185 18-223 191-393 (420)
123 3vu4_A KMHSV2; beta-propeller 96.9 0.12 4.2E-06 55.3 23.3 217 16-264 19-271 (355)
124 2oaj_A Protein SNI1; WD40 repe 96.9 0.041 1.4E-06 67.4 21.6 260 26-301 447-827 (902)
125 3u4y_A Uncharacterized protein 96.9 0.24 8.1E-06 51.8 24.9 220 25-263 50-303 (331)
126 3scy_A Hypothetical bacterial 96.8 0.41 1.4E-05 50.8 27.1 221 25-262 60-335 (361)
127 3bg1_A Protein SEC13 homolog; 96.8 0.41 1.4E-05 50.1 26.0 231 16-263 13-292 (316)
128 2j04_A TAU60, YPL007P, hypothe 96.8 0.1 3.6E-06 59.5 22.1 155 17-192 86-261 (588)
129 1nir_A Nitrite reductase; hemo 96.7 0.2 7E-06 57.3 24.6 229 24-274 188-468 (543)
130 3dsm_A Uncharacterized protein 96.6 0.11 3.7E-06 55.2 20.0 212 78-301 46-301 (328)
131 3u4y_A Uncharacterized protein 96.6 0.72 2.5E-05 48.0 26.3 224 24-273 7-262 (331)
132 1xip_A Nucleoporin NUP159; bet 96.6 0.032 1.1E-06 60.9 15.5 132 14-173 86-230 (388)
133 4e54_B DNA damage-binding prot 96.5 0.044 1.5E-06 60.6 16.9 154 17-188 165-330 (435)
134 2pm7_B Protein transport prote 96.5 0.6 2E-05 48.3 24.6 154 16-186 53-239 (297)
135 3vu4_A KMHSV2; beta-propeller 96.3 0.052 1.8E-06 58.3 15.3 114 27-144 148-271 (355)
136 2hqs_A Protein TOLB; TOLB, PAL 96.3 0.67 2.3E-05 50.8 24.7 185 17-227 179-389 (415)
137 4gga_A P55CDC, cell division c 96.3 1.7 5.7E-05 47.3 30.9 228 20-273 109-361 (420)
138 3scy_A Hypothetical bacterial 96.2 0.25 8.5E-06 52.6 20.2 164 19-192 157-346 (361)
139 4ggc_A P55CDC, cell division c 96.1 1.1 3.9E-05 45.9 24.2 135 75-212 150-300 (318)
140 4ggc_A P55CDC, cell division c 96.1 1.5 5.3E-05 44.8 30.7 229 20-273 29-281 (318)
141 2ojh_A Uncharacterized protein 96.1 1 3.5E-05 45.2 23.2 135 75-212 41-188 (297)
142 2ojh_A Uncharacterized protein 95.7 1.5 5.1E-05 44.0 22.4 154 16-191 41-212 (297)
143 4gq1_A NUP37; propeller, trans 95.7 0.28 9.5E-06 53.3 17.8 150 24-187 99-288 (393)
144 2j04_B YDR362CP, TAU91; beta p 95.7 0.11 3.8E-06 59.2 14.8 149 17-185 267-428 (524)
145 3bg1_A Protein SEC13 homolog; 95.6 0.55 1.9E-05 49.1 19.2 153 16-185 57-247 (316)
146 2oit_A Nucleoporin 214KDA; NH2 95.6 0.099 3.4E-06 58.1 13.7 159 16-186 92-279 (434)
147 2y4t_A DNAJ homolog subfamily 95.5 3.2 0.00011 45.0 25.8 56 304-364 30-85 (450)
148 3v9f_A Two-component system se 95.5 5.5 0.00019 47.4 29.6 266 17-303 363-657 (781)
149 1pby_B Quinohemoprotein amine 95.5 0.54 1.8E-05 48.8 18.4 132 89-224 3-162 (337)
150 3hfq_A Uncharacterized protein 95.4 1.6 5.4E-05 45.8 22.2 146 23-184 94-270 (347)
151 2hqs_A Protein TOLB; TOLB, PAL 95.3 1.2 4.1E-05 48.7 21.6 164 26-212 143-326 (415)
152 3hfq_A Uncharacterized protein 95.3 0.51 1.8E-05 49.7 17.8 158 18-191 142-325 (347)
153 1jmx_B Amine dehydrogenase; ox 95.2 0.26 9E-06 51.6 15.2 69 121-193 261-333 (349)
154 4a2l_A BT_4663, two-component 95.2 7 0.00024 46.5 30.5 262 17-302 357-659 (795)
155 4a2l_A BT_4663, two-component 95.1 0.67 2.3E-05 55.5 20.0 190 17-225 43-244 (795)
156 3ott_A Two-component system se 95.1 5.6 0.00019 47.1 27.9 153 16-191 21-180 (758)
157 2oit_A Nucleoporin 214KDA; NH2 95.0 0.49 1.7E-05 52.4 16.9 159 19-184 39-222 (434)
158 2j04_A TAU60, YPL007P, hypothe 94.9 0.73 2.5E-05 52.6 17.9 151 18-184 131-296 (588)
159 3c75_H MADH, methylamine dehyd 94.9 3.6 0.00012 45.3 23.3 251 24-302 82-402 (426)
160 1qks_A Cytochrome CD1 nitrite 94.9 2.8 9.6E-05 48.0 23.3 213 88-302 167-421 (567)
161 3v9f_A Two-component system se 94.8 2.9 9.8E-05 49.8 24.3 192 12-224 13-238 (781)
162 1rwi_B Serine/threonine-protei 94.3 4.7 0.00016 40.2 23.8 186 18-226 25-223 (270)
163 1q7f_A NHL, brain tumor CG1071 94.2 5.4 0.00019 40.3 23.4 142 18-184 78-237 (286)
164 2j04_B YDR362CP, TAU91; beta p 94.1 1.2 4.1E-05 50.6 17.7 199 17-226 208-429 (524)
165 1qks_A Cytochrome CD1 nitrite 94.0 1.9 6.4E-05 49.5 19.3 221 25-264 207-477 (567)
166 3q7m_A Lipoprotein YFGL, BAMB; 94.0 7.5 0.00026 41.2 25.7 246 20-299 97-375 (376)
167 2xpi_A Anaphase-promoting comp 93.9 10 0.00035 42.7 30.1 182 547-775 340-531 (597)
168 3hxj_A Pyrrolo-quinoline quino 93.8 2.6 8.8E-05 43.6 18.8 242 25-300 29-282 (330)
169 1jof_A Carboxy-CIS,CIS-muconat 93.7 6.3 0.00022 41.7 22.0 226 19-263 42-340 (365)
170 2ecf_A Dipeptidyl peptidase IV 93.5 1.3 4.5E-05 52.1 17.6 69 77-145 110-182 (741)
171 1w3b_A UDP-N-acetylglucosamine 93.1 10 0.00035 40.1 29.0 54 306-364 5-58 (388)
172 4eqf_A PEX5-related protein; a 93.0 1.7 5.7E-05 45.9 15.8 58 303-365 68-125 (365)
173 3ott_A Two-component system se 92.9 9.9 0.00034 44.9 23.9 115 76-192 146-267 (758)
174 3e5z_A Putative gluconolactona 92.7 9.4 0.00032 38.7 25.6 183 19-227 30-248 (296)
175 3hxj_A Pyrrolo-quinoline quino 92.5 4.4 0.00015 41.8 18.0 176 22-226 103-285 (330)
176 2z2n_A Virginiamycin B lyase; 92.5 9.7 0.00033 38.2 30.8 256 17-301 15-294 (299)
177 3nol_A Glutamine cyclotransfer 92.5 4.9 0.00017 40.9 17.3 151 149-302 32-201 (262)
178 1xip_A Nucleoporin NUP159; bet 92.4 2.5 8.6E-05 45.8 16.2 144 75-227 37-193 (388)
179 3ieg_A DNAJ homolog subfamily 92.4 11 0.00038 38.7 24.9 55 305-364 8-62 (359)
180 2z3z_A Dipeptidyl aminopeptida 92.3 3.1 0.00011 48.5 18.3 135 76-212 82-273 (706)
181 3mbr_X Glutamine cyclotransfer 92.2 8 0.00027 38.8 18.4 152 148-302 9-179 (243)
182 3fvz_A Peptidyl-glycine alpha- 92.2 12 0.00042 38.8 21.2 149 77-226 144-323 (329)
183 2z3z_A Dipeptidyl aminopeptida 92.1 1.8 6.1E-05 50.7 15.8 176 18-214 83-329 (706)
184 2iwa_A Glutamine cyclotransfer 91.9 12 0.00041 38.1 20.5 179 118-303 24-238 (266)
185 2xpi_A Anaphase-promoting comp 91.8 20 0.00067 40.3 31.3 57 303-365 87-143 (597)
186 4gq1_A NUP37; propeller, trans 91.6 6.8 0.00023 42.1 18.8 69 17-104 137-218 (393)
187 2ecf_A Dipeptidyl peptidase IV 91.6 6.8 0.00023 45.9 20.3 120 74-195 35-191 (741)
188 1rwi_B Serine/threonine-protei 91.3 12 0.00042 37.0 21.5 184 18-224 68-263 (270)
189 3hym_B Cell division cycle pro 91.2 14 0.00048 37.4 23.9 42 729-770 271-314 (330)
190 1w3b_A UDP-N-acetylglucosamine 90.4 19 0.00067 37.8 23.3 53 308-365 41-93 (388)
191 3nok_A Glutaminyl cyclase; bet 90.2 8.6 0.0003 39.1 16.4 150 19-194 57-219 (268)
192 1k32_A Tricorn protease; prote 90.0 38 0.0013 41.5 25.7 169 19-212 298-487 (1045)
193 1pjx_A Dfpase, DIISOPROPYLFLUO 89.8 18 0.00063 36.5 20.9 181 17-214 71-286 (314)
194 3mbr_X Glutamine cyclotransfer 89.8 14 0.00049 37.0 17.5 151 19-194 23-188 (243)
195 3sjl_D Methylamine dehydrogena 89.4 26 0.00089 37.7 27.8 249 24-300 42-361 (386)
196 1jof_A Carboxy-CIS,CIS-muconat 89.4 12 0.00043 39.3 18.2 116 75-190 144-297 (365)
197 3nok_A Glutaminyl cyclase; bet 88.5 16 0.00056 37.1 17.0 149 150-302 45-210 (268)
198 2oiz_A Aromatic amine dehydrog 88.4 28 0.00095 36.8 21.8 91 97-191 33-146 (361)
199 1fch_A Peroxisomal targeting s 88.3 26 0.00088 36.2 22.6 58 303-365 67-124 (368)
200 3ei3_A DNA damage-binding prot 88.2 60 0.002 40.4 29.6 238 20-274 330-600 (1158)
201 2pl2_A Hypothetical conserved 88.2 9.1 0.00031 37.1 14.9 55 305-364 10-64 (217)
202 2w18_A PALB2, fancn, partner a 87.9 30 0.001 36.7 21.9 136 76-212 179-342 (356)
203 2iwa_A Glutamine cyclotransfer 87.9 25 0.00087 35.7 18.7 152 148-302 9-181 (266)
204 3mkr_A Coatomer subunit epsilo 87.7 21 0.00072 36.5 18.0 54 306-363 5-58 (291)
205 3cv0_A Peroxisome targeting si 87.3 26 0.0009 35.2 21.1 59 302-365 23-81 (327)
206 2qc5_A Streptogramin B lactona 87.2 25 0.00087 35.0 30.8 258 17-300 20-298 (300)
207 1k32_A Tricorn protease; prote 87.1 31 0.0011 42.3 22.1 168 20-212 250-436 (1045)
208 3as5_A MAMA; tetratricopeptide 87.1 14 0.00048 33.5 14.8 54 306-364 14-67 (186)
209 3fp2_A TPR repeat-containing p 87.0 20 0.00069 39.4 18.7 55 306-365 31-85 (537)
210 1npe_A Nidogen, entactin; glyc 86.7 27 0.00092 34.7 25.0 228 26-275 1-248 (267)
211 3vtx_A MAMA; tetratricopeptide 86.5 9.4 0.00032 35.3 13.4 160 549-755 8-168 (184)
212 3sjl_D Methylamine dehydrogena 86.3 6.2 0.00021 42.7 13.1 134 84-223 41-206 (386)
213 3ffl_A Anaphase-promoting comp 86.2 0.78 2.7E-05 43.1 5.1 69 297-365 17-89 (167)
214 3nol_A Glutamine cyclotransfer 86.2 31 0.001 34.9 18.2 145 127-277 53-213 (262)
215 1q7f_A NHL, brain tumor CG1071 86.1 29 0.001 34.6 28.4 186 18-228 31-241 (286)
216 3no2_A Uncharacterized protein 85.9 32 0.0011 34.8 19.4 178 26-227 5-198 (276)
217 2mad_H Methylamine dehydrogena 85.5 41 0.0014 35.8 29.6 250 24-303 30-351 (373)
218 2z2n_A Virginiamycin B lyase; 85.2 32 0.0011 34.2 27.5 186 17-226 57-256 (299)
219 2mad_H Methylamine dehydrogena 84.8 44 0.0015 35.5 24.0 124 97-227 49-198 (373)
220 1xfd_A DIP, dipeptidyl aminope 84.5 9.4 0.00032 44.4 14.8 100 26-145 28-144 (723)
221 3m0c_C LDL receptor, low-densi 84.4 73 0.0025 37.8 24.5 205 91-300 398-630 (791)
222 2ho1_A Type 4 fimbrial biogene 82.8 36 0.0012 32.9 16.5 54 307-365 44-97 (252)
223 2gw1_A Mitochondrial precursor 82.5 58 0.002 35.2 24.7 55 304-364 10-64 (514)
224 3qky_A Outer membrane assembly 82.4 25 0.00086 34.6 15.2 60 304-365 19-78 (261)
225 3o4h_A Acylamino-acid-releasin 81.8 47 0.0016 37.3 19.0 184 17-226 22-228 (582)
226 1z68_A Fibroblast activation p 81.3 9.4 0.00032 44.5 13.1 101 27-145 27-140 (719)
227 2kc7_A BFR218_protein; tetratr 81.1 1.9 6.4E-05 35.7 5.1 55 305-364 5-60 (99)
228 3q7m_A Lipoprotein YFGL, BAMB; 80.5 59 0.002 34.0 27.3 249 21-301 48-336 (376)
229 3c75_H MADH, methylamine dehyd 80.4 13 0.00043 40.9 12.7 121 97-223 101-246 (426)
230 3mkq_B Coatomer subunit alpha; 80.0 41 0.0014 31.8 15.4 56 301-366 6-61 (177)
231 2xev_A YBGF; tetratricopeptide 80.0 3.7 0.00013 35.4 6.9 67 304-379 6-72 (129)
232 2yhc_A BAMD, UPF0169 lipoprote 79.2 44 0.0015 32.1 15.3 59 305-365 9-67 (225)
233 3e5z_A Putative gluconolactona 78.6 57 0.002 32.6 23.5 190 17-226 69-287 (296)
234 1npe_A Nidogen, entactin; glyc 77.9 57 0.0019 32.2 24.4 187 18-227 37-241 (267)
235 2dg1_A DRP35, lactonase; beta 77.5 65 0.0022 32.7 22.6 219 76-300 45-314 (333)
236 2yhc_A BAMD, UPF0169 lipoprote 77.1 3.6 0.00012 40.2 6.5 21 344-364 9-29 (225)
237 2vq2_A PILW, putative fimbrial 76.8 49 0.0017 30.9 16.9 56 305-365 13-68 (225)
238 3dr2_A Exported gluconolactona 76.4 69 0.0024 32.4 18.4 109 77-188 132-269 (305)
239 2ghs_A AGR_C_1268P; regucalcin 76.3 74 0.0025 32.7 26.5 184 19-227 51-262 (326)
240 1xfd_A DIP, dipeptidyl aminope 76.0 6.8 0.00023 45.7 9.6 116 78-194 19-152 (723)
241 3ulq_A Response regulator aspa 76.0 53 0.0018 34.4 16.1 57 309-365 112-169 (383)
242 4gco_A Protein STI-1; structur 75.6 1.3 4.6E-05 39.2 2.5 54 307-365 20-73 (126)
243 2l6j_A TPR repeat-containing p 75.3 3.2 0.00011 34.7 4.9 56 305-365 9-64 (111)
244 1pjx_A Dfpase, DIISOPROPYLFLUO 75.2 71 0.0024 32.0 25.4 189 19-227 20-259 (314)
245 3gyz_A Chaperone protein IPGC; 75.0 4.1 0.00014 37.5 5.9 61 307-379 43-103 (151)
246 2xev_A YBGF; tetratricopeptide 74.5 5.4 0.00019 34.3 6.4 64 307-379 46-109 (129)
247 2ghs_A AGR_C_1268P; regucalcin 74.4 82 0.0028 32.3 19.8 153 16-188 89-262 (326)
248 2gw1_A Mitochondrial precursor 74.1 1E+02 0.0034 33.2 22.2 58 303-365 42-99 (514)
249 3qky_A Outer membrane assembly 73.4 5.6 0.00019 39.6 7.0 26 549-574 151-176 (261)
250 1z68_A Fibroblast activation p 73.2 19 0.00065 41.9 12.5 112 81-195 21-149 (719)
251 3upv_A Heat shock protein STI1 73.2 2.1 7.2E-05 37.2 3.2 57 304-365 8-64 (126)
252 2qc5_A Streptogramin B lactona 73.1 75 0.0026 31.3 27.7 184 17-227 62-262 (300)
253 3no2_A Uncharacterized protein 73.1 81 0.0028 31.7 16.5 170 19-213 39-229 (276)
254 4gyw_A UDP-N-acetylglucosamine 73.0 21 0.00073 41.9 12.7 52 309-365 18-69 (723)
255 3vtx_A MAMA; tetratricopeptide 72.8 3.4 0.00012 38.5 4.8 60 307-371 114-174 (184)
256 3ei3_A DNA damage-binding prot 72.3 2E+02 0.0067 35.8 27.9 72 115-189 514-595 (1158)
257 2ho1_A Type 4 fimbrial biogene 72.2 54 0.0018 31.5 14.0 43 730-772 177-221 (252)
258 3hym_B Cell division cycle pro 72.0 83 0.0029 31.3 18.6 27 549-575 25-51 (330)
259 4eqf_A PEX5-related protein; a 71.4 49 0.0017 34.1 14.2 188 549-774 102-295 (365)
260 2dg1_A DRP35, lactonase; beta 70.8 94 0.0032 31.5 24.6 154 16-188 86-265 (333)
261 3ma5_A Tetratricopeptide repea 70.7 4.3 0.00015 34.0 4.5 54 307-365 14-67 (100)
262 3qou_A Protein YBBN; thioredox 70.4 24 0.00082 35.8 11.1 153 549-754 120-281 (287)
263 3ieg_A DNAJ homolog subfamily 70.0 96 0.0033 31.2 26.1 56 305-365 42-97 (359)
264 1na3_A Designed protein CTPR2; 69.9 5.3 0.00018 31.8 4.8 54 307-365 16-69 (91)
265 2fp8_A Strictosidine synthase; 69.9 1E+02 0.0034 31.4 21.5 140 18-176 81-248 (322)
266 4gcn_A Protein STI-1; structur 69.6 3.8 0.00013 36.1 4.1 52 309-365 17-68 (127)
267 2kck_A TPR repeat; tetratricop 69.5 4.7 0.00016 33.3 4.5 57 304-365 10-66 (112)
268 1fwx_A Nitrous oxide reductase 69.2 1.6E+02 0.0054 33.5 19.4 187 86-275 100-381 (595)
269 4gco_A Protein STI-1; structur 69.2 7.3 0.00025 34.2 5.9 55 306-365 53-107 (126)
270 1hxi_A PEX5, peroxisome target 68.5 3.2 0.00011 36.3 3.3 58 303-365 20-77 (121)
271 3k9i_A BH0479 protein; putativ 68.4 3.4 0.00012 35.6 3.4 53 308-365 35-87 (117)
272 3fvz_A Peptidyl-glycine alpha- 68.3 1.1E+02 0.0038 31.3 25.9 116 76-192 91-234 (329)
273 3sz7_A HSC70 cochaperone (SGT) 67.9 3.1 0.0001 38.3 3.2 56 305-365 16-71 (164)
274 2vgx_A Chaperone SYCD; alterna 67.4 7.9 0.00027 35.1 5.9 54 306-364 27-80 (148)
275 4gyw_A UDP-N-acetylglucosamine 67.3 72 0.0025 37.4 15.6 26 549-574 12-37 (723)
276 3mkr_A Coatomer subunit epsilo 66.8 1.1E+02 0.0038 30.8 21.4 205 507-774 36-248 (291)
277 3g4e_A Regucalcin; six bladed 66.7 1.1E+02 0.0038 30.7 19.5 162 16-194 53-238 (297)
278 2lni_A Stress-induced-phosphop 66.5 7 0.00024 33.5 5.2 58 303-365 19-76 (133)
279 3fp2_A TPR repeat-containing p 66.2 1.5E+02 0.0052 32.1 24.8 62 304-370 63-124 (537)
280 2xcb_A PCRH, regulatory protei 65.9 6.2 0.00021 35.2 4.8 54 306-364 24-77 (142)
281 3c5m_A Oligogalacturonate lyas 65.1 69 0.0023 33.2 13.8 94 97-192 170-280 (396)
282 2xzh_A Clathrin heavy chain 1; 64.5 1.4E+02 0.0049 31.3 22.7 172 27-227 118-325 (365)
283 1fch_A Peroxisomal targeting s 64.5 1.2E+02 0.004 31.0 15.4 98 647-773 197-298 (368)
284 2q7f_A YRRB protein; TPR, prot 64.3 51 0.0017 31.3 11.7 44 730-773 161-206 (243)
285 2q7f_A YRRB protein; TPR, prot 64.3 81 0.0028 29.8 13.2 159 549-754 60-219 (243)
286 4ga2_A E3 SUMO-protein ligase 63.9 3.3 0.00011 37.7 2.5 52 309-365 40-91 (150)
287 2gop_A Trilobed protease; beta 63.4 1.3E+02 0.0045 30.4 17.0 57 76-133 59-122 (347)
288 2vq2_A PILW, putative fimbrial 63.0 96 0.0033 28.7 14.7 179 549-772 11-194 (225)
289 2ece_A 462AA long hypothetical 62.5 1.8E+02 0.0063 31.8 17.6 132 26-175 95-272 (462)
290 1elw_A TPR1-domain of HOP; HOP 62.0 7.7 0.00026 32.2 4.4 56 304-364 8-63 (118)
291 3pe7_A Oligogalacturonate lyas 61.9 1.3E+02 0.0045 31.0 15.4 94 97-191 170-279 (388)
292 3as5_A MAMA; tetratricopeptide 61.8 69 0.0023 28.5 11.6 158 549-753 11-169 (186)
293 2y4t_A DNAJ homolog subfamily 61.6 63 0.0022 34.3 13.0 166 549-754 63-237 (450)
294 4a5s_A Dipeptidyl peptidase 4 61.6 1.5E+02 0.0052 34.4 17.2 108 18-144 18-141 (740)
295 2oiz_A Aromatic amine dehydrog 61.5 1.1E+02 0.0039 31.8 14.7 84 81-166 259-356 (361)
296 3upv_A Heat shock protein STI1 61.3 8.8 0.0003 33.0 4.8 56 305-365 43-98 (126)
297 2r5s_A Uncharacterized protein 61.3 11 0.00038 34.9 5.9 57 303-364 9-65 (176)
298 3k9i_A BH0479 protein; putativ 61.0 4.6 0.00016 34.6 2.8 58 313-379 3-60 (117)
299 3urz_A Uncharacterized protein 60.9 5.4 0.00019 38.4 3.6 60 305-364 9-79 (208)
300 2dba_A Smooth muscle cell asso 60.8 11 0.00039 32.9 5.6 59 304-364 32-90 (148)
301 3al9_A Plexin-A2; beta-propell 59.8 16 0.00053 41.4 7.6 86 3-102 386-478 (539)
302 2pl2_A Hypothetical conserved 59.8 1.2E+02 0.0041 28.7 16.6 181 549-774 8-199 (217)
303 3q49_B STIP1 homology and U bo 59.7 9.5 0.00033 33.1 4.8 56 304-364 13-68 (137)
304 1bpo_A Protein (clathrin); cla 59.0 2.1E+02 0.0072 31.3 23.0 174 26-227 116-324 (494)
305 1n7d_A LDL receptor, low-densi 59.0 81 0.0028 36.7 13.9 200 96-300 387-612 (699)
306 3gyz_A Chaperone protein IPGC; 58.9 11 0.00039 34.4 5.3 52 308-364 78-129 (151)
307 3cv0_A Peroxisome targeting si 58.9 1.1E+02 0.0036 30.5 13.5 99 646-774 187-300 (327)
308 4gcn_A Protein STI-1; structur 58.8 7.9 0.00027 34.0 4.0 59 307-365 49-109 (127)
309 3v65_B Low-density lipoprotein 58.7 1.9E+02 0.0063 30.6 25.3 209 17-247 116-340 (386)
310 3p5b_L Low density lipoprotein 58.1 1.9E+02 0.0066 30.7 25.2 215 17-248 112-343 (400)
311 1elw_A TPR1-domain of HOP; HOP 57.9 11 0.00038 31.1 4.8 55 306-365 44-98 (118)
312 2lni_A Stress-induced-phosphop 57.7 9.8 0.00034 32.5 4.5 55 306-365 56-110 (133)
313 3uq3_A Heat shock protein STI1 57.3 1.3E+02 0.0045 28.4 13.9 177 549-773 41-220 (258)
314 2ece_A 462AA long hypothetical 57.1 2.2E+02 0.0077 31.1 17.6 89 96-185 229-352 (462)
315 3sz7_A HSC70 cochaperone (SGT) 56.6 11 0.00038 34.3 4.8 55 305-364 50-104 (164)
316 2r5s_A Uncharacterized protein 56.1 98 0.0033 28.1 11.6 78 650-754 93-170 (176)
317 1elr_A TPR2A-domain of HOP; HO 56.1 11 0.00037 31.9 4.4 55 306-365 10-64 (131)
318 3rkv_A Putative peptidylprolyl 55.6 6.8 0.00023 35.7 3.1 62 304-365 15-89 (162)
319 2vyi_A SGTA protein; chaperone 55.1 13 0.00045 31.3 4.8 55 306-365 18-72 (131)
320 3v64_C Agrin; beta propeller, 54.0 2.1E+02 0.0071 29.7 24.3 206 21-247 79-297 (349)
321 2kat_A Uncharacterized protein 54.0 13 0.00043 31.5 4.4 54 307-365 26-79 (115)
322 2kck_A TPR repeat; tetratricop 53.8 12 0.0004 30.7 4.1 57 306-365 46-103 (112)
323 2w18_A PALB2, fancn, partner a 53.2 42 0.0014 35.5 9.1 64 21-102 290-355 (356)
324 1n7d_A LDL receptor, low-densi 53.2 61 0.0021 37.8 11.5 114 78-193 498-622 (699)
325 2vyi_A SGTA protein; chaperone 53.1 15 0.0005 31.0 4.8 56 305-365 51-106 (131)
326 1na0_A Designed protein CTPR3; 52.9 15 0.00051 30.6 4.8 55 306-365 15-69 (125)
327 3rkv_A Putative peptidylprolyl 52.6 9.1 0.00031 34.8 3.5 53 308-365 71-123 (162)
328 3g4e_A Regucalcin; six bladed 52.5 1.9E+02 0.0065 28.8 24.6 202 18-245 14-249 (297)
329 3o4h_A Acylamino-acid-releasin 51.6 79 0.0027 35.4 12.0 130 75-212 21-165 (582)
330 1na0_A Designed protein CTPR3; 51.0 17 0.00058 30.2 4.8 56 305-365 48-103 (125)
331 2dba_A Smooth muscle cell asso 50.6 14 0.00047 32.3 4.3 55 306-365 71-125 (148)
332 2fbn_A 70 kDa peptidylprolyl i 49.9 15 0.0005 34.7 4.6 60 306-365 44-114 (198)
333 3dr2_A Exported gluconolactona 49.6 2.1E+02 0.0073 28.6 22.4 133 28-186 59-225 (305)
334 3urz_A Uncharacterized protein 49.5 16 0.00054 35.0 4.9 61 307-379 61-121 (208)
335 1a17_A Serine/threonine protei 49.4 17 0.00058 32.4 4.8 55 305-364 18-72 (166)
336 3azo_A Aminopeptidase; POP fam 49.3 3.3E+02 0.011 30.6 19.1 118 76-194 130-283 (662)
337 4i17_A Hypothetical protein; T 49.1 18 0.00063 34.7 5.3 19 556-574 190-208 (228)
338 1elr_A TPR2A-domain of HOP; HO 49.0 33 0.0011 28.6 6.5 59 306-364 44-104 (131)
339 2fo7_A Synthetic consensus TPR 48.9 20 0.00067 30.2 5.0 52 308-364 43-94 (136)
340 2xcb_A PCRH, regulatory protei 48.7 16 0.00056 32.3 4.5 53 307-364 59-111 (142)
341 3u3w_A Transcriptional activat 47.8 21 0.0007 36.2 5.7 62 304-365 79-141 (293)
342 3q49_B STIP1 homology and U bo 47.7 20 0.00067 30.9 4.8 55 306-365 49-103 (137)
343 1hh8_A P67PHOX, NCF-2, neutrop 47.6 35 0.0012 32.0 7.1 52 306-365 12-63 (213)
344 4i17_A Hypothetical protein; T 47.3 45 0.0015 31.8 7.9 63 307-370 83-149 (228)
345 1a17_A Serine/threonine protei 47.3 19 0.00065 32.1 4.8 54 306-364 53-106 (166)
346 3tc9_A Hypothetical hydrolase; 46.6 2.8E+02 0.0096 29.7 15.0 140 158-300 137-299 (430)
347 4a5s_A Dipeptidyl peptidase 4 46.5 2.4E+02 0.0083 32.6 15.5 113 78-194 19-150 (740)
348 4aez_C MAD3, mitotic spindle c 45.8 2.2E+02 0.0075 27.8 12.2 106 605-757 71-179 (223)
349 1hxi_A PEX5, peroxisome target 45.2 10 0.00035 32.9 2.4 56 309-369 60-116 (121)
350 1ijq_A LDL receptor, low-densi 45.2 2.6E+02 0.0089 28.3 23.8 198 96-300 11-236 (316)
351 2vgx_A Chaperone SYCD; alterna 45.2 14 0.00048 33.3 3.5 52 308-364 63-114 (148)
352 2c2l_A CHIP, carboxy terminus 44.9 18 0.00062 36.6 4.7 61 304-369 8-69 (281)
353 2fbn_A 70 kDa peptidylprolyl i 44.7 19 0.00064 33.9 4.4 53 307-364 95-147 (198)
354 2v5f_A Prolyl 4-hydroxylase su 44.5 41 0.0014 28.1 6.2 57 308-365 13-72 (104)
355 1ijq_A LDL receptor, low-densi 44.1 2.7E+02 0.0093 28.2 26.5 192 18-226 31-240 (316)
356 2fo7_A Synthetic consensus TPR 43.6 24 0.00083 29.5 4.7 55 306-365 7-61 (136)
357 3uq3_A Heat shock protein STI1 43.5 2.1E+02 0.0073 26.8 16.6 151 548-753 81-232 (258)
358 1ihg_A Cyclophilin 40; ppiase 43.5 23 0.00079 37.7 5.4 66 304-369 227-304 (370)
359 1hh8_A P67PHOX, NCF-2, neutrop 42.9 23 0.00078 33.4 4.8 55 305-364 42-96 (213)
360 3oky_B Putative uncharacterize 42.1 1.2E+02 0.004 34.3 10.9 86 7-102 391-497 (565)
361 2hr2_A Hypothetical protein; a 41.9 29 0.001 32.2 5.1 59 306-365 63-128 (159)
362 3amr_A 3-phytase; beta-propell 41.4 3.4E+02 0.012 28.5 22.7 135 28-184 41-209 (355)
363 2pzi_A Probable serine/threoni 41.3 53 0.0018 38.1 8.5 59 305-364 396-458 (681)
364 2c2l_A CHIP, carboxy terminus 40.7 39 0.0013 34.0 6.5 55 306-365 44-98 (281)
365 3gw4_A Uncharacterized protein 40.7 35 0.0012 31.5 5.8 48 310-365 2-52 (203)
366 3oky_A Plexin-A2; transmembran 40.4 46 0.0016 38.6 7.5 84 5-102 387-477 (681)
367 1q47_A Semaphorin 3A; beta pro 40.3 98 0.0033 34.4 10.0 71 18-98 405-485 (495)
368 3ro3_A PINS homolog, G-protein 39.9 34 0.0012 29.8 5.2 57 309-365 18-75 (164)
369 4ga2_A E3 SUMO-protein ligase 39.2 1.7E+02 0.0058 25.8 10.0 98 647-774 47-148 (150)
370 3u4t_A TPR repeat-containing p 38.9 18 0.00062 35.5 3.5 58 303-365 6-63 (272)
371 3ro3_A PINS homolog, G-protein 38.3 35 0.0012 29.6 5.1 59 307-365 56-115 (164)
372 3ol2_B Plexin-B1; beta-propell 38.0 64 0.0022 36.2 8.0 80 8-102 378-463 (528)
373 1ihg_A Cyclophilin 40; ppiase 37.6 36 0.0012 36.2 5.7 54 307-365 280-333 (370)
374 3qww_A SET and MYND domain-con 36.5 63 0.0021 35.3 7.5 53 309-365 349-408 (433)
375 1xnf_A Lipoprotein NLPI; TPR, 36.4 2.9E+02 0.0098 26.3 15.9 27 549-575 46-72 (275)
376 2h6f_A Protein farnesyltransfe 36.3 2.3E+02 0.0077 30.0 11.9 89 720-815 265-358 (382)
377 3tc9_A Hypothetical hydrolase; 36.0 4.3E+02 0.015 28.2 14.8 138 26-184 149-300 (430)
378 3hrp_A Uncharacterized protein 35.4 4.2E+02 0.015 28.0 19.5 116 76-192 219-361 (409)
379 2if4_A ATFKBP42; FKBP-like, al 35.3 32 0.0011 36.0 4.8 54 307-365 237-290 (338)
380 2qfc_A PLCR protein; TPR, HTH, 34.8 51 0.0018 33.1 6.2 60 304-365 79-141 (293)
381 4fww_A Macrophage-stimulating 34.7 72 0.0025 35.8 7.9 31 16-46 404-438 (527)
382 3bee_A Putative YFRE protein; 34.4 40 0.0014 27.8 4.3 44 316-364 25-68 (93)
383 4gz8_A Semaphorin-3A; multi-do 34.4 72 0.0025 36.9 7.8 77 16-102 411-497 (667)
384 1xnf_A Lipoprotein NLPI; TPR, 34.4 34 0.0012 33.4 4.6 53 307-364 50-102 (275)
385 1pc2_A Mitochondria fission pr 34.3 29 0.001 32.0 3.7 58 309-369 41-102 (152)
386 2hr2_A Hypothetical protein; a 34.2 27 0.00091 32.5 3.4 57 308-365 19-83 (159)
387 2wvi_A Mitotic checkpoint seri 33.9 1.2E+02 0.0039 28.3 7.7 103 605-758 18-126 (164)
388 3ax2_A Mitochondrial import re 33.8 37 0.0013 27.0 3.6 38 343-380 21-61 (73)
389 3n71_A Histone lysine methyltr 32.9 65 0.0022 35.8 7.0 57 309-365 318-377 (490)
390 1mda_H Methylamine dehydrogena 32.0 1.5E+02 0.005 31.4 9.4 74 120-196 269-357 (368)
391 3qou_A Protein YBBN; thioredox 31.8 33 0.0011 34.7 4.1 56 304-364 121-176 (287)
392 4f3v_A ESX-1 secretion system 31.8 48 0.0017 33.9 5.3 52 307-364 109-160 (282)
393 1p5q_A FKBP52, FK506-binding p 31.7 40 0.0014 35.1 4.8 54 307-365 203-256 (336)
394 3nf1_A KLC 1, kinesin light ch 31.2 51 0.0017 32.7 5.4 60 306-365 33-95 (311)
395 3ro2_A PINS homolog, G-protein 31.2 41 0.0014 33.6 4.7 59 306-365 11-69 (338)
396 1nzn_A CGI-135 protein, fissio 31.0 73 0.0025 28.2 5.6 59 308-369 43-105 (126)
397 1qqe_A Vesicular transport pro 31.0 52 0.0018 33.2 5.5 58 307-365 165-225 (292)
398 1p5q_A FKBP52, FK506-binding p 30.7 36 0.0012 35.5 4.3 60 306-365 153-222 (336)
399 2vsy_A XCC0866; transferase, g 30.6 4.6E+02 0.016 28.8 14.0 25 549-573 26-50 (568)
400 3u4t_A TPR repeat-containing p 30.4 39 0.0013 33.0 4.3 28 548-575 223-250 (272)
401 2qfc_A PLCR protein; TPR, HTH, 30.3 31 0.0011 34.9 3.6 56 310-365 165-222 (293)
402 3edt_B KLC 2, kinesin light ch 30.2 87 0.003 30.2 6.9 59 307-365 92-153 (283)
403 3n71_A Histone lysine methyltr 30.1 89 0.0031 34.6 7.6 53 309-365 360-419 (490)
404 3sf4_A G-protein-signaling mod 30.1 42 0.0014 35.0 4.7 60 305-365 14-73 (406)
405 2vxg_A LD41624, GE-1, CG6181-P 29.8 25 0.00085 31.9 2.3 24 302-325 2-25 (139)
406 1mda_H Methylamine dehydrogena 29.8 68 0.0023 34.1 6.3 85 97-185 48-158 (368)
407 3m0c_C LDL receptor, low-densi 29.6 7.4E+02 0.025 29.0 29.0 173 76-253 424-619 (791)
408 3qwp_A SET and MYND domain-con 29.4 87 0.003 34.0 7.2 63 303-365 290-355 (429)
409 1kt0_A FKBP51, 51 kDa FK506-bi 29.2 49 0.0017 36.2 5.2 54 307-365 324-377 (457)
410 3edt_B KLC 2, kinesin light ch 28.3 97 0.0033 29.8 6.9 59 307-365 50-111 (283)
411 1kt0_A FKBP51, 51 kDa FK506-bi 28.3 31 0.001 37.9 3.3 60 306-365 274-343 (457)
412 4a1s_A PINS, partner of inscut 28.3 42 0.0014 35.3 4.3 59 306-365 54-112 (411)
413 3hrp_A Uncharacterized protein 27.9 5.5E+02 0.019 27.0 20.5 145 18-184 132-297 (409)
414 3qwp_A SET and MYND domain-con 27.8 98 0.0034 33.6 7.3 53 309-365 338-397 (429)
415 3s94_A LRP-6, low-density lipo 27.7 7E+02 0.024 28.1 22.8 197 97-301 20-242 (619)
416 3sov_A LRP-6, low-density lipo 27.1 5.1E+02 0.017 26.3 24.8 187 19-227 37-241 (318)
417 1olz_A Semaphorin 4D; developm 26.4 1.7E+02 0.0058 33.8 9.2 79 8-102 388-479 (663)
418 1wao_1 Serine/threonine protei 26.1 52 0.0018 36.3 4.7 54 307-365 47-100 (477)
419 2pzi_A Probable serine/threoni 25.6 41 0.0014 39.1 3.8 53 307-364 440-492 (681)
420 3u3w_A Transcriptional activat 25.6 47 0.0016 33.4 3.9 56 310-365 165-222 (293)
421 4g26_A Pentatricopeptide repea 25.4 5.3E+02 0.018 28.2 13.0 169 549-772 29-222 (501)
422 3uc1_A DNA gyrase subunit A; D 25.0 5.8E+02 0.02 26.2 14.6 142 24-179 51-221 (327)
423 4a0p_A LRP6, LRP-6, low-densit 25.0 7.8E+02 0.027 27.8 19.7 152 21-192 86-244 (628)
424 1kb0_A Quinohemoprotein alcoho 24.5 4.7E+02 0.016 30.0 12.7 24 21-44 123-146 (677)
425 3qqz_A Putative uncharacterize 24.4 5.2E+02 0.018 25.5 24.9 156 13-190 23-208 (255)
426 4b4t_Q 26S proteasome regulato 24.2 1.1E+02 0.0036 32.4 6.7 62 304-365 8-81 (434)
427 2e2e_A Formate-dependent nitri 23.5 66 0.0023 29.1 4.3 17 309-325 53-69 (177)
428 3nf1_A KLC 1, kinesin light ch 23.3 1.3E+02 0.0045 29.4 6.9 59 307-365 118-179 (311)
429 3gw4_A Uncharacterized protein 23.3 55 0.0019 30.1 3.7 57 309-365 75-133 (203)
430 1wao_1 Serine/threonine protei 23.1 30 0.001 38.2 2.0 52 309-365 15-66 (477)
431 2vsy_A XCC0866; transferase, g 23.1 76 0.0026 35.5 5.5 53 307-364 30-82 (568)
432 3ma5_A Tetratricopeptide repea 22.7 98 0.0034 25.1 4.8 33 340-379 8-40 (100)
433 3ulq_A Response regulator aspa 22.4 63 0.0021 33.8 4.3 26 549-574 342-367 (383)
434 3nvq_A Semaphorin-7A; beta-pro 22.3 2.6E+02 0.0088 31.7 9.4 63 28-102 382-446 (590)
435 1wp5_A Topoisomerase IV; broke 22.2 6.5E+02 0.022 25.8 15.9 77 22-107 46-128 (323)
436 2ifu_A Gamma-SNAP; membrane fu 21.6 90 0.0031 31.6 5.2 21 344-364 200-220 (307)
437 1qqe_A Vesicular transport pro 21.5 73 0.0025 32.0 4.4 54 311-364 128-183 (292)
438 1om2_A Protein (mitochondrial 20.9 67 0.0023 26.9 3.1 38 343-380 24-64 (95)
439 3q15_A PSP28, response regulat 20.7 71 0.0024 33.4 4.3 25 549-573 339-363 (378)
440 3bee_A Putative YFRE protein; 20.4 73 0.0025 26.2 3.4 26 551-576 48-73 (93)
No 1
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.97 E-value=3.1e-08 Score=121.28 Aligned_cols=327 Identities=17% Similarity=0.209 Sum_probs=222.2
Q ss_pred hhHHHHHHHhcCCHHHHHHHhhhCCCcchH---h-------hh-------hcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 303 LGAQIVQLTASGDFEEALALCKLLPPEDAS---L-------RA-------AKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 303 ~~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~---~-------~~-------~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
..+-...+++.|+|+||+.+.+.....+.. + ++ -....++.++|..+...|+|++|++.|.++
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 333345568899999999999886421110 0 00 012356778899999999999999999886
Q ss_pred CCCHHHHHHhCCCCCCCCCcCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhhhhhhhhhhHHHHHHHH
Q 003405 366 QVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALI 445 (823)
Q Consensus 366 ~~dP~~vi~Lfp~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~p~~l~~~d~~~~le~~~~~~~a~~~L~ 445 (823)
+ ||..+..+ +. . .+ ++ .....++
T Consensus 1132 d-D~say~eV------a~--------~--------------------------------------~~--~l--GkyEEAI 1154 (1630)
T 1xi4_A 1132 D-DPSSYMEV------VQ--------A--------------------------------------AN--TS--GNWEELV 1154 (1630)
T ss_pred C-ChHHHHHH------HH--------H--------------------------------------HH--Hc--CCHHHHH
Confidence 3 33332221 00 0 00 00 1245677
Q ss_pred HHHHHHHHHHHHhhccCCchhHhhhcccCCCcCCCccccccCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcCChhhHH
Q 003405 446 KFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAAL 525 (823)
Q Consensus 446 ~yL~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDT~Ll~~y~~~~~~~~l~ 525 (823)
.||..-|... + ...|||.|..||.++++.+.+.
T Consensus 1155 eyL~mArk~~--~---------------------------------------------e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1155 KYLQMARKKA--R---------------------------------------------ESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred HHHHHHHhhc--c---------------------------------------------cccccHHHHHHHHhhcCHHHHH
Confidence 7886554431 0 0147889999999998877888
Q ss_pred hhhcCCCcccHHHHHHHHHhcCcHHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCcccccccCChHHHHHHhhcCCCCC
Q 003405 526 ELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTD 605 (823)
Q Consensus 526 ~ll~~~n~c~~~~~~~~L~~~~~~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~~~~~~~~~~i~yL~~L~~~~ 605 (823)
.++..+|..+...+-+.|.+.|+|.+...+|...+.|.++..++.++++ .+.+++.-++-. +
T Consensus 1188 ~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge----------------~q~AIEaarKA~--n 1249 (1630)
T 1xi4_A 1188 EFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE----------------YQAAVDGARKAN--S 1249 (1630)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCC----------------HHHHHHHHHHhC--C
Confidence 9998888888888889999999999999999999999999998888742 245565554322 2
Q ss_pred hhhHHHhhhhh-----hhcCccccccccccCCCChH---HHHHHHhhc-CchhHHHHHHHHhhcccCCCChhHHHHHHHH
Q 003405 606 PMLVLEFSMLV-----LESCPTQTIELFLSGNIPAD---LVNSYLKQY-SPSMQGRYLELMLAMNENSISGNLQNEMVQI 676 (823)
Q Consensus 606 ~~li~~y~~wl-----l~~~p~~~~~if~~~~l~~~---~Vl~~L~~~-~~~~~~~YLE~li~~~~~~~~~~~h~~L~~l 676 (823)
.+...+.+--. ++.....++.|- ..++ .++.+.+.. .-+.++.+||.-+..+ .....+.++|+.+
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~Ii----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--raH~gmftELaiL 1323 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhh----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--hhHhHHHHHHHHH
Confidence 22111111111 111111122211 1232 444555543 2456888999977532 3567899999999
Q ss_pred HHHHHHHHhhhhhhhcccCcccchHHHHHHHHHhhh-cCCCChHHHhccCCCCchhhHHHHHhhccccHHHHHHHHHHHh
Q 003405 677 YLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALES-ISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKV 755 (823)
Q Consensus 677 Yl~~i~~~~~~~~~~~~~~~~~~~~~r~kLl~fL~~-s~~Yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~~AL~ilv~~L 755 (823)
|+.+ .+.|++..++- .+.-+..++++.|....++.|.++||.+-|+++.|+..++...
T Consensus 1324 yaKy---------------------~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~ 1382 (1630)
T 1xi4_A 1324 YSKF---------------------KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 1382 (1630)
T ss_pred HHhC---------------------CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcc
Confidence 9987 36888888887 6788999999999999999999999999999999998888654
Q ss_pred --------------CCCchhHHHHHHHHhcCCCCCcc
Q 003405 756 --------------FLINQPVFLLIRRMAMDIKPLVT 778 (823)
Q Consensus 756 --------------~D~~~a~~~~l~~~y~~~~~~~~ 778 (823)
+.-++.+|+-...+|++.+|..-
T Consensus 1383 ~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~l 1419 (1630)
T 1xi4_A 1383 TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLL 1419 (1630)
T ss_pred HhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHH
Confidence 33378899999999998765443
No 2
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=98.63 E-value=9e-06 Score=88.94 Aligned_cols=249 Identities=12% Similarity=0.065 Sum_probs=155.4
Q ss_pred cccccCCCCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecc--
Q 003405 9 LELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS-- 86 (823)
Q Consensus 9 ~~l~~~~~~~I~ci~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~-- 86 (823)
...+..-...|+|++...+.|+.|+.||.|.+|++...... ..+.....+.+ +..+|..+...+.
T Consensus 9 ~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~------------~~~~~~~~~~~-h~~~v~~~~~~~~~~ 75 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNE------------NPKDKSYSHFV-HKSGLHHVDVLQAIE 75 (397)
T ss_dssp EEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTC------------CGGGGEEEEEC-CTTCEEEEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccc------------cCCCcceEEec-CCCcEEEEEEecccc
Confidence 33444456789999999999999999999999998754321 12233344443 3678999999998
Q ss_pred --c---CceeeEeC-c-EEEEeCCCCcc-----cccccCC------CCcEEEEee----CCCce-EEEE-EcCeEEEEEE
Q 003405 87 --R---QLLLSLSE-S-IAFHRLPNLET-----IAVLTKA------KGANVYSWD----DRRGF-LCFA-RQKRVCIFRH 142 (823)
Q Consensus 87 --~---~~Ll~l~d-~-l~~~~L~~l~~-----~~~i~~~------kg~~~fa~~----~~~~~-l~V~-~kkki~l~~~ 142 (823)
. +.+++.+. + |.+|++.+.+. ...+... ..+.+++++ ++... ++++ ..+.|.+|..
T Consensus 76 ~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 76 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred cCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 6 77777764 4 99999865543 3333333 678888888 76666 7776 4567889888
Q ss_pred cC------CCcee--Eeeeec--------CCCCceEEEecCC-eEEEEEc-CceEEEEcCCCCeeeccCC---C---CCC
Q 003405 143 DG------GRGFV--EVKDFG--------VPDTVKSMSWCGE-NICIAIR-KGYMILNATNGALSEVFPS---G---RIG 198 (823)
Q Consensus 143 ~~------~~~f~--~~kei~--------~~~~~~~l~~~~~-~i~v~~~-~~y~lidl~~~~~~~L~~~---~---~~~ 198 (823)
.. +.... ....+. -...+.+++|..+ .+++|.. ....++|+.+++....+.. . ...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 235 (397)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC
T ss_pred CccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc
Confidence 74 32222 111221 2568999999843 6666665 4578899998876554443 1 111
Q ss_pred CCEEEEccCCeEEE-Ee-C---CeEEEEcC-CCccccCCcee--------------ecCCCcEEEEe--CCEEEEEeC-C
Q 003405 199 PPLVVSLLSGELLL-GK-E---NIGVFVDQ-NGKLLQADRIC--------------WSEAPIAVIIQ--KPYAIALLP-R 255 (823)
Q Consensus 199 ~p~i~~~~~~EfLL-~~-~---~~gvfv~~-~G~~~~~~~i~--------------w~~~P~~v~~~--~PYll~~~~-~ 255 (823)
.-.+...+++.+++ +. + +...++|. .|... ..+. -......+.+. ..|+++... +
T Consensus 236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 313 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI--GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 313 (397)
T ss_dssp EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE--EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred cceEEECCCCCEEEEEecCCCCceEEEEECCCCccc--ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC
Confidence 12334456777766 33 3 34455664 44432 1121 12233456664 567777775 6
Q ss_pred eEEEEEccCCCceeEEEe
Q 003405 256 RVEVRSLRVPYALIQTIV 273 (823)
Q Consensus 256 ~ieV~~l~~~~~lvQ~i~ 273 (823)
.|.|+++. ++..++++.
T Consensus 314 ~i~iwd~~-~~~~~~~~~ 330 (397)
T 1sq9_A 314 KLRFWDVK-TKERITTLN 330 (397)
T ss_dssp EEEEEETT-TTEEEEEEE
T ss_pred eEEEEEcC-CCceeEEEe
Confidence 79999997 578888887
No 3
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=98.63 E-value=5.9e-05 Score=80.90 Aligned_cols=237 Identities=12% Similarity=0.082 Sum_probs=149.1
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
...|+|++.. ++.|+.|+.+|.|.+|++.... ....+.+ +..+|..+...|..+.+++.
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~------------------~~~~~~~-h~~~v~~~~~~~~~~~l~s~ 92 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE------------------RLGTLDG-HTGTIWSIDVDCFTKYCVTG 92 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC------------------EEEEECC-CSSCEEEEEECTTSSEEEEE
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch------------------hhhhhhh-cCCcEEEEEEcCCCCEEEEE
Confidence 4679998875 4689999999999999865321 2334433 36789999999988888888
Q ss_pred eC-c-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEEc------CeEEEEEEcCCCc---eeEe-----eeec-C
Q 003405 94 SE-S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQ------KRVCIFRHDGGRG---FVEV-----KDFG-V 156 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~k------kki~l~~~~~~~~---f~~~-----kei~-~ 156 (823)
+. + |.+|++.+.+....+.....+..++++++...++++.. +.|.+|....+.. +... ..+. .
T Consensus 93 ~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 93 SADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp ETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred eCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 75 5 99999988776666555667888999888777777755 5888888764321 1111 1111 1
Q ss_pred C--CCceEEEec--CCeEEEEEcC-ceEEEEcCC-CCeeeccCCCCCCCCEEEEccCCeEEE-E-eCCeEEEEcCC-Ccc
Q 003405 157 P--DTVKSMSWC--GENICIAIRK-GYMILNATN-GALSEVFPSGRIGPPLVVSLLSGELLL-G-KENIGVFVDQN-GKL 227 (823)
Q Consensus 157 ~--~~~~~l~~~--~~~i~v~~~~-~y~lidl~~-~~~~~L~~~~~~~~p~i~~~~~~EfLL-~-~~~~gvfv~~~-G~~ 227 (823)
. +.+.+++|. ++.+++|... ...++|+.+ ++....+.........+...+++.+|+ + .++...++|.. |+.
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence 2 278899997 5578888774 578899988 444444333221112244456777666 3 34555666653 332
Q ss_pred ccCCceeecCCCcEEEEe--CCEEEEEeCC---------------eEEEEEccCCCceeEEEee
Q 003405 228 LQADRICWSEAPIAVIIQ--KPYAIALLPR---------------RVEVRSLRVPYALIQTIVL 274 (823)
Q Consensus 228 ~~~~~i~w~~~P~~v~~~--~PYll~~~~~---------------~ieV~~l~~~~~lvQ~i~l 274 (823)
. ..+.-......+.+. ..++++.... .+.++++. ++..++++.-
T Consensus 253 ~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~ 313 (369)
T 3zwl_B 253 L--KKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI-FEEEIGRVQG 313 (369)
T ss_dssp E--EEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT-TCCEEEEEEC
T ss_pred e--eeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC-CCcchhheec
Confidence 2 223322233334433 4566665543 57777775 4666666643
No 4
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.57 E-value=6.6e-07 Score=98.94 Aligned_cols=223 Identities=15% Similarity=0.130 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHhcCChhhHHhhhcCCCccc-------------HHHHHHHHHhcCcHHHHHHHHHHhccHHHHHHHHHHH
Q 003405 506 ILDTALLQALLLTGQSSAALELLKGLNYCD-------------VKICEEILQKKNHYTALLELYKSNARHREALKLLHEL 572 (823)
Q Consensus 506 ~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~-------------~~~~~~~L~~~~~~~~L~~ly~~~g~~~~AL~ll~~l 572 (823)
.|||.|..||.++++-..+..|++.||... .+++.....+.+.|..|+..+.+-|+++.|.+...+.
T Consensus 95 ~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 95 YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp --------------CHHHHTTTTTCC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 689999999999998888889998876433 3444444445566777788888888888888888776
Q ss_pred hhcccCCCCcccccccCChHHHHHHhhcCCCCChhhHHHhhhhhhhcCccccccccccCCCChHHHHHHHhhc-CchhHH
Q 003405 573 VEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQY-SPSMQG 651 (823)
Q Consensus 573 ~~~~~~d~~~~~~~~~~~~~~~i~yL~~L~~~~~~li~~y~~wll~~~p~~~~~if~~~~l~~~~Vl~~L~~~-~~~~~~ 651 (823)
.+... | ..++.-...+ .++++-..++.-|. .+|+. ...++.+.+.. .-..++
T Consensus 175 ~~~~~---W----------k~v~~aCv~~--~ef~lA~~~~l~L~-~~ad~-----------l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 175 NSTRT---W----------KEVCFACVDG--KEFRLAQMCGLHIV-VHADE-----------LEELINYYQDRGYFEELI 227 (449)
T ss_dssp TCHHH---H----------HHHHHHHHHT--TCHHHHHHTTTTTT-TCHHH-----------HHHHHHHHHHTTCHHHHH
T ss_pred CCchh---H----------HHHHHHHHHc--CcHHHHHHHHHHHH-hCHhh-----------HHHHHHHHHHCCCHHHHH
Confidence 31110 0 0111111111 13333322222211 22222 11234444432 245688
Q ss_pred HHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccchHHHHHHHHHhhh-cCCCChHHHhccCCCCch
Q 003405 652 RYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALES-ISGYNPEVLLKRLPADAL 730 (823)
Q Consensus 652 ~YLE~li~~~~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kLl~fL~~-s~~Yd~~~~L~~~~~~~l 730 (823)
.|||.-+.. + .....+-|.|+.+|..+ ...||+..|+. .+.-+.+++++.|..-.+
T Consensus 228 ~lLe~aL~l-e-~ah~~~ftel~il~~ky---------------------~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 228 TMLEAALGL-E-RAHMGMFTELAILYSKF---------------------KPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHTTS-T-TCCHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred HHHHHHhCC-c-HHHHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999997753 2 45678899999999988 36899999998 789999999999999999
Q ss_pred hhHHHHHhhccccHHHHHHHHHHHhCC--------------CchhHHHHHHHHhcCCCCCcc
Q 003405 731 YEERAILLGKMNQHELALSLYVHKVFL--------------INQPVFLLIRRMAMDIKPLVT 778 (823)
Q Consensus 731 ~~e~~~Ll~klg~h~~AL~ilv~~L~D--------------~~~a~~~~l~~~y~~~~~~~~ 778 (823)
+.|.++||..-|+++.|...++....+ -+..+|+-...+|++.+|..-
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l 346 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLL 346 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999999987655 156799999999998876654
No 5
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.50 E-value=0.0028 Score=76.24 Aligned_cols=151 Identities=12% Similarity=0.097 Sum_probs=101.1
Q ss_pred CcEEEEEE----eCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceee
Q 003405 17 PKIDAVAS----YGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (823)
Q Consensus 17 ~~I~ci~~----~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~ 92 (823)
..|.|++. .++.|++|+.+|.|.+|+.... .....+.+ +..+|..+...|..+++++
T Consensus 185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------------------~~~~~~~~-~~~~v~~~~~~~~~~~l~~ 245 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK------------------SCVATLEG-HMSNVSFAVFHPTLPIIIS 245 (814)
T ss_dssp TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT------------------EEEEEEEC-CSSCEEEEEECSSSSEEEE
T ss_pred CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC------------------cEEEEEcC-CCCCEEEEEEcCCCCEEEE
Confidence 45677666 4569999999999999986532 12233333 3578999999999888888
Q ss_pred EeC-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCc--eEEEEEcCeEEEEEEcCCCc---------eeE--------
Q 003405 93 LSE-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRG--FLCFARQKRVCIFRHDGGRG---------FVE-------- 150 (823)
Q Consensus 93 l~d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~--~l~V~~kkki~l~~~~~~~~---------f~~-------- 150 (823)
.+. + |.+|++.+.+....+. ....+..+++.++.. .++++....+.++....+.. ...
T Consensus 246 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 325 (814)
T 3mkq_A 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAA 325 (814)
T ss_dssp EETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCT
T ss_pred EeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccc
Confidence 875 5 9999998766554432 234677788777654 36777788887776542110 000
Q ss_pred -----------------------eee-ecCCCCceEEEec--CCeEEEEEcCceEEEEcCCC
Q 003405 151 -----------------------VKD-FGVPDTVKSMSWC--GENICIAIRKGYMILNATNG 186 (823)
Q Consensus 151 -----------------------~ke-i~~~~~~~~l~~~--~~~i~v~~~~~y~lidl~~~ 186 (823)
.++ -..+..|++++|. |..++++....+.++++...
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~ 387 (814)
T 3mkq_A 326 SDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAW 387 (814)
T ss_dssp TCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTT
T ss_pred eeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccc
Confidence 000 0122357899997 56788888888999997643
No 6
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=98.45 E-value=0.00012 Score=77.38 Aligned_cols=188 Identities=12% Similarity=0.204 Sum_probs=126.3
Q ss_pred CCCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceee
Q 003405 15 CSPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (823)
Q Consensus 15 ~~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~ 92 (823)
-...|+|++.. ++.|++|+.+|.|.+|++..... .....+.. +..+|..+...|..+.+++
T Consensus 96 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----------------~~~~~~~~-~~~~i~~~~~~~~~~~l~~ 158 (337)
T 1gxr_A 96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP----------------RIKAELTS-SAPACYALAISPDSKVCFS 158 (337)
T ss_dssp TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------------EEEEEEEC-SSSCEEEEEECTTSSEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc----------------ceeeeccc-CCCceEEEEECCCCCEEEE
Confidence 34578888877 46899999999999999764321 11222222 3568999999998888888
Q ss_pred EeC-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEeeeecCCCCceEEEec--
Q 003405 93 LSE-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC-- 166 (823)
Q Consensus 93 l~d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~-- 166 (823)
.+. + |.+|++.+.+....+. ....++.++++++...++++. .+.|.+|....+ .....+..+..+.+++|.
T Consensus 159 ~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~v~~~~~s~~ 235 (337)
T 1gxr_A 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQHDFTSQIFSLGYCPT 235 (337)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECSSCEEEEEECTT
T ss_pred EeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---ceEeeecCCCceEEEEECCC
Confidence 775 4 9999998776555443 245688888988777777774 557777777643 234445667889999997
Q ss_pred CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEEE-e-CCeEEEEcC
Q 003405 167 GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLG-K-ENIGVFVDQ 223 (823)
Q Consensus 167 ~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL~-~-~~~gvfv~~ 223 (823)
++.+++|.. ....++|+.+++...+..... .-..+...+++.++++ . ++...+.+.
T Consensus 236 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 236 GEWLAVGMESSNVEVLHVNKPDKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp SSEEEEEETTSCEEEEETTSSCEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCEEEEEcCCCcEEEEECCCCCeEEEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEEC
Confidence 567888886 567899999887665543321 1112334466676663 3 444455554
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=98.45 E-value=0.0002 Score=76.47 Aligned_cols=235 Identities=14% Similarity=0.167 Sum_probs=149.2
Q ss_pred CCcEEEEEEe------CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCc
Q 003405 16 SPKIDAVASY------GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQL 89 (823)
Q Consensus 16 ~~~I~ci~~~------~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~ 89 (823)
...|.|++.. ++.|+.|+.||.+.+|++... ...+...+.+ +..+|..+...+...+
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~----------------~~~~~~~l~g-h~~~v~~~~~~~~~~~ 94 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE----------------RLDLQWSLEG-HQLGVVSVDISHTLPI 94 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEETTSCEEEEEEETT----------------EEEEEEEECC-CSSCEEEEEECSSSSE
T ss_pred CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCC----------------Ceeeeeeecc-CCCCEEEEEECCCCCE
Confidence 4579998864 457999999999999986532 1122223333 3678999999998888
Q ss_pred eeeEeC-c-EEEEeCCCCcccccccC-CCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeec-CCCCceEEE
Q 003405 90 LLSLSE-S-IAFHRLPNLETIAVLTK-AKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFG-VPDTVKSMS 164 (823)
Q Consensus 90 Ll~l~d-~-l~~~~L~~l~~~~~i~~-~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~-~~~~~~~l~ 164 (823)
+++-+. + |++|++.+-+.+..+.. ...+..++++++...++++ ..+.+.+|....++. ...+. -...+.+++
T Consensus 95 l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~---~~~~~~~~~~v~~~~ 171 (321)
T 3ow8_A 95 AASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK---EYSLDTRGKFILSIA 171 (321)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE---EEEEECSSSCEEEEE
T ss_pred EEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce---eEEecCCCceEEEEE
Confidence 888774 4 99999987665544332 2346667888877777777 456788888764432 12222 235688999
Q ss_pred ec--CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEEE-e-CCeEEEEcCC-CccccCCceeec-C
Q 003405 165 WC--GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLG-K-ENIGVFVDQN-GKLLQADRICWS-E 237 (823)
Q Consensus 165 ~~--~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL~-~-~~~gvfv~~~-G~~~~~~~i~w~-~ 237 (823)
|. |..|+.|.. ....++|+.+++....+......-..+...+++.+|++ . |....+.|.. |... ..+.-. .
T Consensus 172 ~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~h~~ 249 (321)
T 3ow8_A 172 YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA--GTLSGHAS 249 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE--EEECCCSS
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee--EEEcCCCC
Confidence 97 557888876 45788999998765444432222234555677777773 3 3455556643 3221 122211 1
Q ss_pred CCcEEEEe--CCEEEEEeC-CeEEEEEccCCCceeEEEe
Q 003405 238 APIAVIIQ--KPYAIALLP-RRVEVRSLRVPYALIQTIV 273 (823)
Q Consensus 238 ~P~~v~~~--~PYll~~~~-~~ieV~~l~~~~~lvQ~i~ 273 (823)
....+++. ..++++... +.|.|+++. ++..++++.
T Consensus 250 ~v~~~~~sp~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~ 287 (321)
T 3ow8_A 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVG-TRTCVHTFF 287 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEEC
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCEEEEEEc
Confidence 23445553 457777765 679999996 577777764
No 8
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.43 E-value=0.0003 Score=78.80 Aligned_cols=259 Identities=10% Similarity=0.090 Sum_probs=155.4
Q ss_pred cEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC-c
Q 003405 18 KIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-S 96 (823)
Q Consensus 18 ~I~ci~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d-~ 96 (823)
-++|+...++.|+.|+.||.|.+|++... +....+.+ +..+|..+...+.. .+++-+. +
T Consensus 124 v~~~~~~~~~~l~sgs~dg~i~vwd~~~~------------------~~~~~~~~-h~~~V~~l~~~~~~-~l~s~s~dg 183 (464)
T 3v7d_B 124 VITCLQFEDNYVITGADDKMIRVYDSINK------------------KFLLQLSG-HDGGVWALKYAHGG-ILVSGSTDR 183 (464)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTT------------------EEEEEECC-CSSCEEEEEECSTT-EEEEEETTS
T ss_pred cEEEEEECCCEEEEEcCCCcEEEEECCCC------------------cEEEEEeC-CCcCEEEEEEcCCC-EEEEEeCCC
Confidence 47899999999999999999999986532 23344443 36799999998765 5555554 5
Q ss_pred -EEEEeCCCCccccccc-CCCCcEEEEeeC--CCceEEEE-EcCeEEEEEEcCCCceeE--------------------e
Q 003405 97 -IAFHRLPNLETIAVLT-KAKGANVYSWDD--RRGFLCFA-RQKRVCIFRHDGGRGFVE--------------------V 151 (823)
Q Consensus 97 -l~~~~L~~l~~~~~i~-~~kg~~~fa~~~--~~~~l~V~-~kkki~l~~~~~~~~f~~--------------------~ 151 (823)
|.+|++.+-+....+. ....++++++.+ +...++++ ..+.|.+|.......... .
T Consensus 184 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 184 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred CEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 9999998766554443 334677777764 33456665 456788888764321110 1
Q ss_pred eee-cCCCCceEEEecCCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-E-eCCeEEEEcC-CCc
Q 003405 152 KDF-GVPDTVKSMSWCGENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-G-KENIGVFVDQ-NGK 226 (823)
Q Consensus 152 kei-~~~~~~~~l~~~~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~-~~~~gvfv~~-~G~ 226 (823)
... .-...+.++...++.++.|.. ....++|+.+++....+......-..+...+++.+++ + .|+...+.|. .|+
T Consensus 264 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 264 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp EEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred EEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 111 113467778878888888887 5678899998876554443221112233445666665 3 3455555664 454
Q ss_pred cccCCceee-cCCCcEEEEeCCEEEEEeC-CeEEEEEccCCCceeEEEeeCCcc---cccccCCeEEEeccceEEEee
Q 003405 227 LLQADRICW-SEAPIAVIIQKPYAIALLP-RRVEVRSLRVPYALIQTIVLQNVR---HLIPSSNAVVVALENSIFGLF 299 (823)
Q Consensus 227 ~~~~~~i~w-~~~P~~v~~~~PYll~~~~-~~ieV~~l~~~~~lvQ~i~l~~~~---~l~~~~~~v~v~s~~~I~~l~ 299 (823)
.. ..+.- ......+.+...++++... +.|.|+++.. ............. .+...+..+..++++.|....
T Consensus 344 ~~--~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd 418 (464)
T 3v7d_B 344 LM--YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND-YSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYN 418 (464)
T ss_dssp EE--EEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTT-CCEEEEEECTTCCCEEEEEECSSEEEEEETTEEEEEE
T ss_pred EE--EEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC-CceeeeecCCCCccEEEEEeCCCEEEEecCCeEEEEE
Confidence 32 12222 2233556677778888775 6899999863 5544444433221 112334444445555554443
No 9
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.42 E-value=1.4e-05 Score=98.27 Aligned_cols=229 Identities=12% Similarity=0.107 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHhcCChhhHHhhhcCCCcccHHHHHHHHHhcCcHHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCcccc
Q 003405 506 ILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEH 585 (823)
Q Consensus 506 ~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~~~~~~~L~~~~~~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~ 585 (823)
.+.|-|-.+|++.++..+...+-.-...+++..+...+.+...+.+++.||.+.|++++|+....+-.... |.
T Consensus 1315 gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a----~~--- 1387 (1630)
T 1xi4_A 1315 GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDA----WK--- 1387 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhh----hh---
Confidence 57888999999988654433222223456677778888888999999999999999999998887643221 11
Q ss_pred cccCChHHHHHHhhcCCCCChhhHHHhhhhhhhcCcccccccccc--CCCChHHHHHHHhhcC-chhHHHHHHHHhhccc
Q 003405 586 TQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLS--GNIPADLVNSYLKQYS-PSMQGRYLELMLAMNE 662 (823)
Q Consensus 586 ~~~~~~~~~i~yL~~L~~~~~~li~~y~~wll~~~p~~~~~if~~--~~l~~~~Vl~~L~~~~-~~~~~~YLE~li~~~~ 662 (823)
+..--+-+. ...+.+++.+-..+.++..|..--.+++. ..++.++++.++.+.+ -.+...||+.+-..
T Consensus 1388 -----~~~Fk~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~-- 1458 (1630)
T 1xi4_A 1388 -----EGQFKDIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH-- 1458 (1630)
T ss_pred -----hHHHHHHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHh--
Confidence 111122233 34588999999999999988876666555 5799999999998653 34678999988532
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccchHHHHHHHHHhhhcCCCChHHHhccCCCCchhh---HHHHHhh
Q 003405 663 NSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYE---ERAILLG 739 (823)
Q Consensus 663 ~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kLl~fL~~s~~Yd~~~~L~~~~~~~l~~---e~~~Ll~ 739 (823)
....+-..|.++|++.- ..+.|+.-++.-+.||...+..++..+++.+ --++||.
T Consensus 1459 --n~~~Vneal~el~ieee--------------------d~~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~ 1516 (1630)
T 1xi4_A 1459 --NNKSVNESLNNLFITEE--------------------DYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFK 1516 (1630)
T ss_pred --cchhhhHHHHHHhcCcc--------------------chHHHHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 35677888999999751 3577888888889999999999999987653 4577999
Q ss_pred ccccHHHHHHHHHHHhCCC-----------chhHHHHHHHHhcCC
Q 003405 740 KMNQHELALSLYVHKVFLI-----------NQPVFLLIRRMAMDI 773 (823)
Q Consensus 740 klg~h~~AL~ilv~~L~D~-----------~~a~~~~l~~~y~~~ 773 (823)
|-|++++|..++-.. +++ +..+--.||.+|++.
T Consensus 1517 ~n~~~~~ai~l~k~d-~l~~dAm~~a~~S~d~e~~e~ll~~F~~~ 1560 (1630)
T 1xi4_A 1517 GNNRWKQSVELCKKD-SLYKDAMQYASESKDTELAEELLQWFLQE 1560 (1630)
T ss_pred hcCcHHHHHHHHHhc-cCHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999998742 221 345666677777776
No 10
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=98.39 E-value=0.00019 Score=79.01 Aligned_cols=232 Identities=9% Similarity=0.089 Sum_probs=145.9
Q ss_pred cEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC-c
Q 003405 18 KIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-S 96 (823)
Q Consensus 18 ~I~ci~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d-~ 96 (823)
.+.|++..++.++.|+.+|.|++|++.... ....+...+..+|..+...|..+.+++-+. +
T Consensus 95 ~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~------------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 156 (401)
T 4aez_A 95 YLNLLDWSNLNVVAVALERNVYVWNADSGS------------------VSALAETDESTYVASVKWSHDGSFLSVGLGNG 156 (401)
T ss_dssp TCBCEEECTTSEEEEEETTEEEEEETTTCC------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTS
T ss_pred eEEEEeecCCCEEEEECCCeEEEeeCCCCc------------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCC
Confidence 355677778899999999999999976421 122222224678999999998888887764 5
Q ss_pred -EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeee-cCCCCceEEEec--CCeE
Q 003405 97 -IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDF-GVPDTVKSMSWC--GENI 170 (823)
Q Consensus 97 -l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei-~~~~~~~~l~~~--~~~i 170 (823)
|.+|++.+.+....+. ....+.+++.+. ..++.+ ..+.|.+|....... ....+ .-.+.+.+++|. ++.+
T Consensus 157 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l 232 (401)
T 4aez_A 157 LVDIYDVESQTKLRTMAGHQARVGCLSWNR--HVLSSGSRSGAIHHHDVRIANH--QIGTLQGHSSEVCGLAWRSDGLQL 232 (401)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSC--EEEEEECCSSCEEEEEECTTSSEE
T ss_pred eEEEEECcCCeEEEEecCCCCceEEEEECC--CEEEEEcCCCCEEEEecccCcc--eeeEEcCCCCCeeEEEEcCCCCEE
Confidence 9999998766554443 234566777743 356665 456777877763221 12222 235689999997 5578
Q ss_pred EEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCC-eEEEE----eCCeEEEEcC-CCccccCCceeecCCCcEEE
Q 003405 171 CIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSG-ELLLG----KENIGVFVDQ-NGKLLQADRICWSEAPIAVI 243 (823)
Q Consensus 171 ~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~-EfLL~----~~~~gvfv~~-~G~~~~~~~i~w~~~P~~v~ 243 (823)
+.|.. ....++|+.+++....+......-..+...+++ .++++ .|+...+.|. .|.+. ..+.-......+.
T Consensus 233 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~--~~~~~~~~v~~~~ 310 (401)
T 4aez_A 233 ASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV--NTVDAGSQVTSLI 310 (401)
T ss_dssp EEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE--EEEECSSCEEEEE
T ss_pred EEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE--EEEeCCCcEEEEE
Confidence 88877 567899999876554443322222345555544 44443 2555666664 44432 2333344455566
Q ss_pred Ee--CCEEEEEe---CCeEEEEEccCCCceeEEEee
Q 003405 244 IQ--KPYAIALL---PRRVEVRSLRVPYALIQTIVL 274 (823)
Q Consensus 244 ~~--~PYll~~~---~~~ieV~~l~~~~~lvQ~i~l 274 (823)
+. .+++++.. .+.|.|+++. ++...+...+
T Consensus 311 ~s~~~~~l~~~~g~~dg~i~v~~~~-~~~~~~~~~~ 345 (401)
T 4aez_A 311 WSPHSKEIMSTHGFPDNNLSIWSYS-SSGLTKQVDI 345 (401)
T ss_dssp ECSSSSEEEEEECTTTCEEEEEEEE-TTEEEEEEEE
T ss_pred ECCCCCeEEEEeecCCCcEEEEecC-CccceeEEEe
Confidence 53 56787765 5789999986 3555555444
No 11
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=98.39 E-value=0.00012 Score=78.39 Aligned_cols=247 Identities=10% Similarity=0.074 Sum_probs=150.5
Q ss_pred cccccccCCCCcEEEEEEeC-----CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEE
Q 003405 7 DSLELISNCSPKIDAVASYG-----LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSM 81 (823)
Q Consensus 7 ~~~~l~~~~~~~I~ci~~~~-----~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI 81 (823)
....++..-...|+|++... +.|+.|+.||.|.+|++.... ..+...+.+ +..+|..+
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~----------------~~~~~~~~~-h~~~v~~~ 92 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG----------------QTIPKAQQM-HTGPVLDV 92 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS----------------CEEEEEEEE-CSSCEEEE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC----------------ceeEEEecc-ccCCEEEE
Confidence 33444444467899998874 579999999999999976421 112123332 36799999
Q ss_pred EEecccCceeeEeC-c-EEEEeCCCCcccccccCCCCcEEEEe--eCCCceEEEEE-cCeEEEEEEcCCCceeEeeeecC
Q 003405 82 EVLASRQLLLSLSE-S-IAFHRLPNLETIAVLTKAKGANVYSW--DDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFGV 156 (823)
Q Consensus 82 ~~~~~~~~Ll~l~d-~-l~~~~L~~l~~~~~i~~~kg~~~fa~--~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kei~~ 156 (823)
...|..+.+++.+. + |.+|++.+.+..........++.+++ +++...++++. .+.|.+|....++ .+..+..
T Consensus 93 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~ 169 (368)
T 3mmy_A 93 CWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN---PMMVLQL 169 (368)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS---CSEEEEC
T ss_pred EECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc---EEEEEec
Confidence 99998888888875 5 99999987765544445567888887 55555566664 5677787776432 2344556
Q ss_pred CCCceEEEecCCeEEEEEc-CceEEEEcCCCCee-eccCCC-CCCCCEEEEccCC----e-EEEEe-CCeEEEEcCCCcc
Q 003405 157 PDTVKSMSWCGENICIAIR-KGYMILNATNGALS-EVFPSG-RIGPPLVVSLLSG----E-LLLGK-ENIGVFVDQNGKL 227 (823)
Q Consensus 157 ~~~~~~l~~~~~~i~v~~~-~~y~lidl~~~~~~-~L~~~~-~~~~p~i~~~~~~----E-fLL~~-~~~gvfv~~~G~~ 227 (823)
++.+.++.+.++.+++++. ....++|+.++... ...... .....++....+. . ++.+. ++...+.+.....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 170 PERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN 249 (368)
T ss_dssp SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred CCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence 7788889998888888877 56788898765321 111111 1111222222221 1 44443 4444555544321
Q ss_pred c--cCCceeecC-------------CCcEEEEe--CCEEEEEeC-CeEEEEEccCCCceeEEEee
Q 003405 228 L--QADRICWSE-------------APIAVIIQ--KPYAIALLP-RRVEVRSLRVPYALIQTIVL 274 (823)
Q Consensus 228 ~--~~~~i~w~~-------------~P~~v~~~--~PYll~~~~-~~ieV~~l~~~~~lvQ~i~l 274 (823)
. ....+.... ....+++. ..|+++... +.|.|+++. ++..++++.-
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~ 313 (368)
T 3mmy_A 250 PAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD-ARTKLKTSEQ 313 (368)
T ss_dssp HHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT-TTEEEEECCC
T ss_pred ccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC-CCcEEEEecC
Confidence 1 011222211 23445554 347777764 679999997 4777777653
No 12
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=98.34 E-value=0.00023 Score=75.72 Aligned_cols=244 Identities=10% Similarity=0.000 Sum_probs=145.5
Q ss_pred cCCCCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccC-c
Q 003405 13 SNCSPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQ-L 89 (823)
Q Consensus 13 ~~~~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~-~ 89 (823)
..-...|+|++.. ++.|++|+.+|.|.+|++..... .... ..... +..+|..+...|..+ .
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~--------------~~~~-~~~~~-~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK--------------NVDL-LQSLR-YKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT--------------EEEE-EEEEE-CSSCEEEEEEEESSSEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc--------------cccc-eeeee-cCCceEEEEECCCCCcE
Confidence 3334579998876 57899999999999999764321 0111 12222 367999999999988 7
Q ss_pred eeeEeC-c-EEEEeC-CCCccccccc--CCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcC--CCc----eeEeeeecCC
Q 003405 90 LLSLSE-S-IAFHRL-PNLETIAVLT--KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDG--GRG----FVEVKDFGVP 157 (823)
Q Consensus 90 Ll~l~d-~-l~~~~L-~~l~~~~~i~--~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~--~~~----f~~~kei~~~ 157 (823)
+++.+. + |.+|++ .+-+...... ....++.+++++ ...++.+ ..+.|.+|.... +.. ...++.+..+
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 150 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK 150 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC
T ss_pred EEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeC
Confidence 777764 5 999998 6654322222 345678888888 5566666 456677777652 000 1223345567
Q ss_pred CCceEEEecCCeEEEEEcC-ceEEEEcCC-CCee--eccCCCCCCCCEEEEcc-CCeEEE-EeC-CeEEEEcCCCc--c-
Q 003405 158 DTVKSMSWCGENICIAIRK-GYMILNATN-GALS--EVFPSGRIGPPLVVSLL-SGELLL-GKE-NIGVFVDQNGK--L- 227 (823)
Q Consensus 158 ~~~~~l~~~~~~i~v~~~~-~y~lidl~~-~~~~--~L~~~~~~~~p~i~~~~-~~EfLL-~~~-~~gvfv~~~G~--~- 227 (823)
+.+.+++|.++.+++|+.. ...++|+.+ +... ............+...+ ++.+++ +.. +...+.+.+.. .
T Consensus 151 ~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~ 230 (342)
T 1yfq_A 151 NKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY 230 (342)
T ss_dssp CCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST
T ss_pred CceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccc
Confidence 8999999998888888874 688899987 5421 11111111112233445 566555 443 34444333222 0
Q ss_pred ccCCceeecC------------CCcEEEEe--CCEEEEEeC-CeEEEEEccCCCceeEEEee
Q 003405 228 LQADRICWSE------------APIAVIIQ--KPYAIALLP-RRVEVRSLRVPYALIQTIVL 274 (823)
Q Consensus 228 ~~~~~i~w~~------------~P~~v~~~--~PYll~~~~-~~ieV~~l~~~~~lvQ~i~l 274 (823)
.......+.. ....+.+. ..++++... +.|.|+++. ++..+.++.-
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~ 291 (342)
T 1yfq_A 231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ-TRKKIKNFAK 291 (342)
T ss_dssp TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT-TTEEEEECCC
T ss_pred ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc-cHhHhhhhhc
Confidence 0011222222 23345553 457776665 579999996 4777766543
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=98.33 E-value=0.00085 Score=70.65 Aligned_cols=231 Identities=18% Similarity=0.227 Sum_probs=145.8
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
...|+|++.. ++.|+.|+.||.+.+|+..... ..+.+.+ +..+|..+...|..+.+++.
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~------------------~~~~~~~-h~~~v~~~~~~~~~~~l~s~ 83 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------------FEKTISG-HKLGISDVAWSSDSNLLVSA 83 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC------------------EEEEECC-CSSCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc------------------cchhhcc-CCCceEEEEEcCCCCEEEEE
Confidence 4579998876 4689999999999999865321 2233333 36789999999998888888
Q ss_pred eC-c-EEEEeCCCCcccccccC-CCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeecC-CCCceEEEec--
Q 003405 94 SE-S-IAFHRLPNLETIAVLTK-AKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGV-PDTVKSMSWC-- 166 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~~~~~i~~-~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~~-~~~~~~l~~~-- 166 (823)
++ + |.+|++.+.+.+..+.. ...+.+++++++...++.+ ..+.|.+|....++ ..+.+.. .+++.+++|.
T Consensus 84 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~ 160 (312)
T 4ery_A 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHFNRD 160 (312)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTT
T ss_pred CCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE---EEEEecCCCCcEEEEEEcCC
Confidence 76 4 99999987665544432 3457778888877677766 45678888876442 2333332 4578899997
Q ss_pred CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCE--EEEccCCeEEEE--eCCeEEEEcCC-CccccCCceeecCC--
Q 003405 167 GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPL--VVSLLSGELLLG--KENIGVFVDQN-GKLLQADRICWSEA-- 238 (823)
Q Consensus 167 ~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~--i~~~~~~EfLL~--~~~~gvfv~~~-G~~~~~~~i~w~~~-- 238 (823)
++.++.|.. ....++|+.+++....+.... ..++ +...+++.++++ .|+...++|.. |+.. -.+...
T Consensus 161 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~ 235 (312)
T 4ery_A 161 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL----KTYTGHKN 235 (312)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCSS-CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE----EEECSSCC
T ss_pred CCEEEEEeCCCcEEEEECCCCceeeEEeccC-CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE----EEEEecCC
Confidence 456777776 457889999886543332221 1232 334467777763 34555566643 3321 111111
Q ss_pred ---CcEEEEe---CCEEEEEeC-CeEEEEEccCCCceeEEEee
Q 003405 239 ---PIAVIIQ---KPYAIALLP-RRVEVRSLRVPYALIQTIVL 274 (823)
Q Consensus 239 ---P~~v~~~---~PYll~~~~-~~ieV~~l~~~~~lvQ~i~l 274 (823)
.....+. ..++++-.. +.|.|+++. ++.+++++.-
T Consensus 236 ~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~-~~~~~~~~~~ 277 (312)
T 4ery_A 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ-TKEIVQKLQG 277 (312)
T ss_dssp SSSCCCEEEECSSSCEEEECCTTSCEEEEETT-TCCEEEEECC
T ss_pred ceEEEEEEEEeCCCcEEEEECCCCEEEEEECC-Cchhhhhhhc
Confidence 1112222 345655554 679999997 5788887753
No 14
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.31 E-value=0.00037 Score=84.05 Aligned_cols=238 Identities=10% Similarity=0.103 Sum_probs=154.4
Q ss_pred CCCCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCcee
Q 003405 14 NCSPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLL 91 (823)
Q Consensus 14 ~~~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll 91 (823)
.-+..|+|++.. ++.|++|+.+|.|.+|+.... ...+.+.. +..+|..+...|..+.++
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~------------------~~~~~~~~-~~~~v~~~~~s~~~~~l~ 71 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ------------------VEVRSIQV-TETPVRAGKFIARKNWII 71 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT------------------EEEEEEEC-CSSCEEEEEEEGGGTEEE
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC------------------ceEEEEec-CCCcEEEEEEeCCCCEEE
Confidence 335689998877 468999999999999986531 12334333 367999999999999888
Q ss_pred eEeC-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEEEc-CeEEEEEEcCCCceeEeeee-cCCCCceEEEec
Q 003405 92 SLSE-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFARQ-KRVCIFRHDGGRGFVEVKDF-GVPDTVKSMSWC 166 (823)
Q Consensus 92 ~l~d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~~k-kki~l~~~~~~~~f~~~kei-~~~~~~~~l~~~ 166 (823)
+.++ + |.+|++.+.+.+..+. ....+++++++++...++++.. +.|.+|.+..+. ...+.+ .-++.+.+++|.
T Consensus 72 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~v~~~~~~ 149 (814)
T 3mkq_A 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW--ALEQTFEGHEHFVMCVAFN 149 (814)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS--EEEEEEECCSSCEEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc--eEEEEEcCCCCcEEEEEEE
Confidence 8876 5 9999998776555444 3346888999988777877754 678899887442 222222 235689999997
Q ss_pred C---CeEEEEEc-CceEEEEcCCCCeeeccCCCC-CCCCEEEEcc--CCeEEEE-e-CCeEEEEcC-CCccccCCceeec
Q 003405 167 G---ENICIAIR-KGYMILNATNGALSEVFPSGR-IGPPLVVSLL--SGELLLG-K-ENIGVFVDQ-NGKLLQADRICWS 236 (823)
Q Consensus 167 ~---~~i~v~~~-~~y~lidl~~~~~~~L~~~~~-~~~p~i~~~~--~~EfLL~-~-~~~gvfv~~-~G~~~~~~~i~w~ 236 (823)
. +.++.|+. ....++|+.++.....+..+. .....+...+ ++.++++ . ++...+.+. .|... ..+...
T Consensus 150 p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~~~~~ 227 (814)
T 3mkq_A 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV--ATLEGH 227 (814)
T ss_dssp TTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE--EEEECC
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE--EEEcCC
Confidence 4 46777776 457888998776544333322 2223444444 6666663 3 344555564 33321 223322
Q ss_pred CCC-cEEEEe--CCEEEEEeC-CeEEEEEccCCCceeEEEeeC
Q 003405 237 EAP-IAVIIQ--KPYAIALLP-RRVEVRSLRVPYALIQTIVLQ 275 (823)
Q Consensus 237 ~~P-~~v~~~--~PYll~~~~-~~ieV~~l~~~~~lvQ~i~l~ 275 (823)
..+ ..+.+. .+++++... +.|.|+++. ++..++++...
T Consensus 228 ~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~-~~~~~~~~~~~ 269 (814)
T 3mkq_A 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSS-TYKVEKTLNVG 269 (814)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETT-TCSEEEEECCS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCcEEEEeecC
Confidence 222 344443 357777765 679999986 57777776554
No 15
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=98.30 E-value=0.00014 Score=79.42 Aligned_cols=193 Identities=12% Similarity=0.064 Sum_probs=121.0
Q ss_pred CCCCcEEEEEEe------C---CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCC----CCCeeE
Q 003405 14 NCSPKIDAVASY------G---LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFS----KKPILS 80 (823)
Q Consensus 14 ~~~~~I~ci~~~------~---~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~----k~~I~q 80 (823)
.-...|+|++.. + +.|+.|+.+|.|.+|++...... .-...+.+.... ..+|..
T Consensus 60 ~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~v~~ 126 (397)
T 1sq9_A 60 VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET-------------KKVIFEKLDLLDSDMKKHSFWA 126 (397)
T ss_dssp CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT-------------CCEEEEEECCSCTTGGGSCEEE
T ss_pred cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc-------------ccccceeecccccccCCCcEEE
Confidence 345678888765 5 68999999999999997643210 001123333332 478999
Q ss_pred EEEe----cccCc-eeeEeC-c-EEEEeCCC------Ccccc-----ccc--------CCCCcEEEEeeCCCceEEEEE-
Q 003405 81 MEVL----ASRQL-LLSLSE-S-IAFHRLPN------LETIA-----VLT--------KAKGANVYSWDDRRGFLCFAR- 133 (823)
Q Consensus 81 I~~~----~~~~~-Ll~l~d-~-l~~~~L~~------l~~~~-----~i~--------~~kg~~~fa~~~~~~~l~V~~- 133 (823)
+... |..+. +++.+. + |.+|++.+ .+.+. .+. ....+++++++++. .++++.
T Consensus 127 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~ 205 (397)
T 1sq9_A 127 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN 205 (397)
T ss_dssp EEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT
T ss_pred EEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC
Confidence 9999 88888 777665 5 99999876 33332 221 23457888888877 777774
Q ss_pred cCeEEEEEEcCCCceeEeeeecC-------CCCceEEEec--CCeEEEEEcC----ceEEEEcCCCCeeeccCC------
Q 003405 134 QKRVCIFRHDGGRGFVEVKDFGV-------PDTVKSMSWC--GENICIAIRK----GYMILNATNGALSEVFPS------ 194 (823)
Q Consensus 134 kkki~l~~~~~~~~f~~~kei~~-------~~~~~~l~~~--~~~i~v~~~~----~y~lidl~~~~~~~L~~~------ 194 (823)
.+.|.+|....+ ..+..+.. ...+.+++|. +..++.|... ...++|+.+++....+..
T Consensus 206 dg~i~i~d~~~~---~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 282 (397)
T 1sq9_A 206 NGTVQISELSTL---RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 282 (397)
T ss_dssp TSEEEEEETTTT---EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----
T ss_pred CCcEEEEECCCC---ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccc
Confidence 467888877643 23344444 6789999997 5677777764 678899998875444432
Q ss_pred -------CCCCCCEEEEccCCeEEE-Ee-CCeEEEEcC
Q 003405 195 -------GRIGPPLVVSLLSGELLL-GK-ENIGVFVDQ 223 (823)
Q Consensus 195 -------~~~~~p~i~~~~~~EfLL-~~-~~~gvfv~~ 223 (823)
.......+...+++.+|+ +. |+...+.+.
T Consensus 283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp ---CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred ccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 111111234446677766 33 455556665
No 16
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=98.30 E-value=0.00073 Score=74.76 Aligned_cols=234 Identities=16% Similarity=0.184 Sum_probs=145.7
Q ss_pred CCcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~~--~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
...|+|++.+. +.|+.|+.||.|.+|+..... ..+.++++ ..+|..+...+..+++++.
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~------------------~~~~l~~h-~~~V~~v~~~~~~~~l~sg 168 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD------------------FERTLKGH-TDSVQDISFDHSGKLLASC 168 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC------------------CCEEECCC-SSCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------------------EEEEEecc-CCcEEEEEEcCCCCEEEEE
Confidence 35799988774 689999999999999976422 12344443 5789999999988888887
Q ss_pred eC-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeec-CCCCceEEEec--
Q 003405 94 SE-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFG-VPDTVKSMSWC-- 166 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~-~~~~~~~l~~~-- 166 (823)
+. + |++|++.+.+.+..+. ....+++++++++...++.+ ..+.|.+|....+.. ++.+. -.+.+.++.|.
T Consensus 169 s~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~---~~~~~~h~~~v~~~~~~~~ 245 (410)
T 1vyh_C 169 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC---VKTFTGHREWVRMVRPNQD 245 (410)
T ss_dssp ETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE---EEEEECCSSCEEEEEECTT
T ss_pred eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE---EEEEeCCCccEEEEEECCC
Confidence 75 4 9999998776554433 23468888888877667666 456788887764432 22332 23567888887
Q ss_pred CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEcc--------------------CCeEEE-E-eCCeEEEEcC
Q 003405 167 GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLL--------------------SGELLL-G-KENIGVFVDQ 223 (823)
Q Consensus 167 ~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~--------------------~~EfLL-~-~~~~gvfv~~ 223 (823)
|..++.|.. +...+.|+.+++....+........++...+ ++.+++ + .|+...+.|.
T Consensus 246 g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~ 325 (410)
T 1vyh_C 246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325 (410)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred CCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence 445666666 5678899988765443322111111122222 245666 3 3445555664
Q ss_pred -CCccccCCceee-cCCCcEEEEe--CCEEEEEeC-CeEEEEEccCCCceeEEEee
Q 003405 224 -NGKLLQADRICW-SEAPIAVIIQ--KPYAIALLP-RRVEVRSLRVPYALIQTIVL 274 (823)
Q Consensus 224 -~G~~~~~~~i~w-~~~P~~v~~~--~PYll~~~~-~~ieV~~l~~~~~lvQ~i~l 274 (823)
.|... ..+.= ......+.+. ..||++... +.|.|+++. ++..++++..
T Consensus 326 ~~~~~~--~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~-~~~~~~~~~~ 378 (410)
T 1vyh_C 326 STGMCL--MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK-NKRCMKTLNA 378 (410)
T ss_dssp TTTEEE--EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT-TSCCCEEEEC
T ss_pred CCCceE--EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCceEEEEcC
Confidence 34322 11111 1122345553 457877775 579999986 4777777753
No 17
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=98.29 E-value=0.00022 Score=78.04 Aligned_cols=244 Identities=10% Similarity=0.086 Sum_probs=139.8
Q ss_pred CcEEEEEEe--CC-EEEEEeCCCcEEEEcC----CCCCCCCCCCCcccccccccceeeeeecCC-----CCCCeeEEEEe
Q 003405 17 PKIDAVASY--GL-KILLGCSDGSLKIYSP----GSSESDRSPPSDYQSLRKESYELERTISGF-----SKKPILSMEVL 84 (823)
Q Consensus 17 ~~I~ci~~~--~~-~L~vGT~~G~l~~y~~----~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~-----~k~~I~qI~~~ 84 (823)
..|+|++.. ++ .|+.|+.+|.|.+|++ ......- .+ .....+...+... +..+|..+...
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYW-------KL-TIIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CE-------EE-EEEEEEECCCCCC------CBCEEEEEEC
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccc-------cc-cccccccccccccccccCCCCceEEEEEc
Confidence 467888766 45 8999999999999998 4321000 00 0011111111111 35589999999
Q ss_pred cccCceeeEeC-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEeeeecCCC-C
Q 003405 85 ASRQLLLSLSE-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFGVPD-T 159 (823)
Q Consensus 85 ~~~~~Ll~l~d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kei~~~~-~ 159 (823)
|..+++++.+. + |.+|+. +-+....+. ....++.++++++...++++. .+.+.+|.+..++ ..+.+..+. .
T Consensus 118 ~~~~~l~~~~~dg~i~i~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~ 193 (425)
T 1r5m_A 118 HDGNSIVTGVENGELRLWNK-TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT---VMQHFELKETG 193 (425)
T ss_dssp TTSSEEEEEETTSCEEEEET-TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE---EEEEECCC---
T ss_pred CCCCEEEEEeCCCeEEEEeC-CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc---EEEEeeccccC
Confidence 98888888775 5 999993 333333333 234678888888776777664 4678888776432 222232222 2
Q ss_pred ---------------ceEEEec-CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-Ee-CCeEEE
Q 003405 160 ---------------VKSMSWC-GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-GK-ENIGVF 220 (823)
Q Consensus 160 ---------------~~~l~~~-~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~~-~~~gvf 220 (823)
+.+++|. ++.+++|.. ....++|+.+++....+......-..+...+++.+++ +. ++...+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 273 (425)
T 1r5m_A 194 GSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI 273 (425)
T ss_dssp ------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred ccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 7888887 445666655 5678899998765444432221112233445666665 43 455556
Q ss_pred EcCC-CccccCCcee-ecCCCcEEEEeCC-EEEEEeC-CeEEEEEccCCCceeEEEeeC
Q 003405 221 VDQN-GKLLQADRIC-WSEAPIAVIIQKP-YAIALLP-RRVEVRSLRVPYALIQTIVLQ 275 (823)
Q Consensus 221 v~~~-G~~~~~~~i~-w~~~P~~v~~~~P-Yll~~~~-~~ieV~~l~~~~~lvQ~i~l~ 275 (823)
.+.. |+.. ..+. -......+.+... ++++... +.|.|+++. ++..++++...
T Consensus 274 ~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~ 329 (425)
T 1r5m_A 274 WHGGNGNSQ--NCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLK-QNTLLALSIVD 329 (425)
T ss_dssp ECSSSBSCS--EEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETT-TTEEEEEEECT
T ss_pred EECCCCccc--eEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECC-CCcEeEecccC
Confidence 6643 3221 1222 1223345555533 5555554 689999996 47777776643
No 18
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.28 E-value=0.00051 Score=76.58 Aligned_cols=187 Identities=12% Similarity=0.162 Sum_probs=114.8
Q ss_pred CCCeeEEEEecccCceeeEeC-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeE
Q 003405 75 KKPILSMEVLASRQLLLSLSE-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVE 150 (823)
Q Consensus 75 k~~I~qI~~~~~~~~Ll~l~d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~ 150 (823)
..+|..+..- .+.+++.+. + |.+|++.+.+....+. ....+++++. +...++++ ..+.|.+|....+ ..
T Consensus 199 ~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~---~~ 271 (445)
T 2ovr_B 199 TSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE---TC 271 (445)
T ss_dssp SSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT---EE
T ss_pred CCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC---cE
Confidence 5678888764 355666664 5 9999988765544432 2335666666 33456666 4567888877633 22
Q ss_pred eeeec-CCCCceEEEecCCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-Ee-CCeEEEEcC-CC
Q 003405 151 VKDFG-VPDTVKSMSWCGENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-GK-ENIGVFVDQ-NG 225 (823)
Q Consensus 151 ~kei~-~~~~~~~l~~~~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~~-~~~gvfv~~-~G 225 (823)
++.+. -.+.+.++.|.++.++.|.. +...++|+.+++....+.... .+......++.+++ +. |+...+.|. .|
T Consensus 272 ~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~ 349 (445)
T 2ovr_B 272 LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ--SLTSGMELKDNILVSGNADSTVKIWDIKTG 349 (445)
T ss_dssp EEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC--SCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred eEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc--ccEEEEEEeCCEEEEEeCCCeEEEEECCCC
Confidence 33333 34688999998888888887 567889999887654443322 12222222344544 43 455556664 44
Q ss_pred ccccCCcee----ecCCCcEEEEeCCEEEEEeC-CeEEEEEccCCCceeEEEe
Q 003405 226 KLLQADRIC----WSEAPIAVIIQKPYAIALLP-RRVEVRSLRVPYALIQTIV 273 (823)
Q Consensus 226 ~~~~~~~i~----w~~~P~~v~~~~PYll~~~~-~~ieV~~l~~~~~lvQ~i~ 273 (823)
... ..+. -......+.+...++++... +.|.|+++. ++..++++.
T Consensus 350 ~~~--~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~ 399 (445)
T 2ovr_B 350 QCL--QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK-TGEFIRNLV 399 (445)
T ss_dssp CEE--EEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETT-TCCEEEEEE
T ss_pred cEE--EEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECC-CCceeeeee
Confidence 432 2222 22334567777778888775 679999997 578888773
No 19
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=98.27 E-value=0.00077 Score=71.08 Aligned_cols=236 Identities=12% Similarity=0.043 Sum_probs=144.6
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecC-CCCCCeeEEEEecccCceee
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISG-FSKKPILSMEVLASRQLLLS 92 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~-~~k~~I~qI~~~~~~~~Ll~ 92 (823)
+..|+|++.. ++.|+.|+ +|.+.+|++...... ... ..+.. -+..+|..+...|..+.+++
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~------------~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~ 114 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK------------SPV---SQLDCLNRDNYIRSCKLLPDGCTLIV 114 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC------------SCS---EEEECSCTTSBEEEEEECTTSSEEEE
T ss_pred CCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce------------eee---ecccccCCCCcEEEEEEcCCCCEEEE
Confidence 3467777765 45778887 999999998753321 111 11111 23578999999999888887
Q ss_pred EeC-c-EEEEeCCCCc--cccccc-CCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEeeeec-CCCCceEEEe
Q 003405 93 LSE-S-IAFHRLPNLE--TIAVLT-KAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFG-VPDTVKSMSW 165 (823)
Q Consensus 93 l~d-~-l~~~~L~~l~--~~~~i~-~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kei~-~~~~~~~l~~ 165 (823)
.+. + |.+|++.+-+ ....+. ....++.++++++...++++. .+.|.+|....+ ...+.+. -.+.+.+++|
T Consensus 115 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~---~~~~~~~~~~~~i~~~~~ 191 (337)
T 1gxr_A 115 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDGASCIDI 191 (337)
T ss_dssp EESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---ceeeeeecccCceEEEEE
Confidence 775 5 9999997654 222222 334578888888777777774 467888877643 2233333 3468899999
Q ss_pred c--CCeEEEEEcC-ceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-Ee-CCeEEEEcCCCccccCCcee-ecCCC
Q 003405 166 C--GENICIAIRK-GYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-GK-ENIGVFVDQNGKLLQADRIC-WSEAP 239 (823)
Q Consensus 166 ~--~~~i~v~~~~-~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~~-~~~gvfv~~~G~~~~~~~i~-w~~~P 239 (823)
. ++.++.+... ...++|+.+++....+..... ...+...+++.+++ +. ++...+++..+... ..+. -...+
T Consensus 192 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~~v 268 (337)
T 1gxr_A 192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ-IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK--YQLHLHESCV 268 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC-EEEEEECTTSSEEEEEETTSCEEEEETTSSCE--EEECCCSSCE
T ss_pred CCCCCEEEEEecCCcEEEEECCCCceEeeecCCCc-eEEEEECCCCCEEEEEcCCCcEEEEECCCCCe--EEEcCCccce
Confidence 7 5578888764 568899998876555543211 12233446666666 33 45555666544321 1111 12234
Q ss_pred cEEEEe--CCEEEEEeC-CeEEEEEccCCCceeEEEee
Q 003405 240 IAVIIQ--KPYAIALLP-RRVEVRSLRVPYALIQTIVL 274 (823)
Q Consensus 240 ~~v~~~--~PYll~~~~-~~ieV~~l~~~~~lvQ~i~l 274 (823)
..+.+. ..++++... +.+.|+++. ++..+.....
T Consensus 269 ~~~~~~~~~~~l~~~~~dg~i~~~~~~-~~~~~~~~~~ 305 (337)
T 1gxr_A 269 LSLKFAYCGKWFVSTGKDNLLNAWRTP-YGASIFQSKE 305 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEEEEC
T ss_pred eEEEECCCCCEEEEecCCCcEEEEECC-CCeEEEEecC
Confidence 455554 457777664 679999986 4665554443
No 20
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=98.26 E-value=0.00019 Score=77.19 Aligned_cols=229 Identities=11% Similarity=0.063 Sum_probs=139.0
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
...|+|++.. ++.|++|+.+|.|.+|++... .+.....+.+ +..+|..|...|..+.+++.
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~----------------~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~ 70 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN----------------KWVQVHELKE-HNGQVTGVDWAPDSNRIVTC 70 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETT----------------EEEEEEEEEC-CSSCEEEEEEETTTTEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC----------------cEEeeeeecC-CCCcccEEEEeCCCCEEEEE
Confidence 4578888776 468999999999999986532 1223344443 36799999999988888887
Q ss_pred eC-c-EEEEeCCCCccccc---ccCCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEeeee--cCCCCceEEEe
Q 003405 94 SE-S-IAFHRLPNLETIAV---LTKAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDF--GVPDTVKSMSW 165 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~~~~~---i~~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kei--~~~~~~~~l~~ 165 (823)
+. + |.+|++.+.+.... ......+++++++++...++++. .+.+.+|.+..+..+...+.+ ...+.+.+++|
T Consensus 71 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 71 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp ETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred cCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 75 5 99999866542221 22345688888888777787775 467889988765433333333 23578999999
Q ss_pred c--CCeEEEEEc-CceEEEEcC------------------CCCeeeccCCCCCCCCEEEEccCCeEEE-E-eCCeEEEEc
Q 003405 166 C--GENICIAIR-KGYMILNAT------------------NGALSEVFPSGRIGPPLVVSLLSGELLL-G-KENIGVFVD 222 (823)
Q Consensus 166 ~--~~~i~v~~~-~~y~lidl~------------------~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~-~~~~gvfv~ 222 (823)
. ++.++.|.. ....++|+. +++....+.........+...+++.+++ + .|+...+.|
T Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 151 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 230 (372)
T ss_dssp CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 7 456777776 457889964 2333222221111111233445666665 3 344455555
Q ss_pred C-CCccccCCceeecC-CCcEEEEe--CCEEEEEeCCeEEEEEcc
Q 003405 223 Q-NGKLLQADRICWSE-APIAVIIQ--KPYAIALLPRRVEVRSLR 263 (823)
Q Consensus 223 ~-~G~~~~~~~i~w~~-~P~~v~~~--~PYll~~~~~~ieV~~l~ 263 (823)
. .|+.. ..+.-.. ....+.+. ..++++-..+.+.|+++.
T Consensus 231 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~ 273 (372)
T 1k8k_C 231 ADKKMAV--ATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYD 273 (372)
T ss_dssp GGGTTEE--EEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEE
T ss_pred CCCCcee--EEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEcc
Confidence 4 34322 1222222 22344443 345555555678888775
No 21
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=98.25 E-value=0.00019 Score=78.57 Aligned_cols=224 Identities=12% Similarity=0.109 Sum_probs=134.9
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe
Q 003405 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 17 ~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
..|+|++.. ++.|++|+.+|.|.+|+... .....+.. +..+|..+...|..+.+++.+
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~-------------------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 168 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENGELRLWNKTG-------------------ALLNVLNF-HRAPIVSVKWNKDGTHIISMD 168 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTSCEEEEETTS-------------------CEEEEECC-CCSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------------------CeeeeccC-CCccEEEEEECCCCCEEEEEe
Confidence 379998876 46899999999999998221 12233332 367899999999988888877
Q ss_pred C-c-EEEEeCCCCcccccccCCCC----------------cEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeec
Q 003405 95 E-S-IAFHRLPNLETIAVLTKAKG----------------ANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFG 155 (823)
Q Consensus 95 d-~-l~~~~L~~l~~~~~i~~~kg----------------~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~ 155 (823)
. + +.+|++.+.+....+....+ +..++..++ +.++++ ..+.|.+|....+.....++ .
T Consensus 169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~--~ 245 (425)
T 1r5m_A 169 VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLI--G 245 (425)
T ss_dssp TTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEEC--C
T ss_pred cCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeec--c
Confidence 5 4 99999977654433222111 445555554 345555 66778888877443222221 2
Q ss_pred CCCCceEEEec--CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-E-eCCeEEEEcC-CCcccc
Q 003405 156 VPDTVKSMSWC--GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-G-KENIGVFVDQ-NGKLLQ 229 (823)
Q Consensus 156 ~~~~~~~l~~~--~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~-~~~~gvfv~~-~G~~~~ 229 (823)
....+.+++|. ++.++.|.. ....++|+.+++....+.......-.+...+++ .++ + .++...+++. .|...
T Consensus 246 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~- 323 (425)
T 1r5m_A 246 HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL- 323 (425)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE-
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe-
Confidence 34678999997 456888876 557889998876554443222111223344566 444 3 3455556664 33322
Q ss_pred CCceee-cCCCcEEEEe--CCEEEEEeC-CeEEEEEccCCCc
Q 003405 230 ADRICW-SEAPIAVIIQ--KPYAIALLP-RRVEVRSLRVPYA 267 (823)
Q Consensus 230 ~~~i~w-~~~P~~v~~~--~PYll~~~~-~~ieV~~l~~~~~ 267 (823)
..+.- ...+..+.+. ..++++... +.|.|+++.. +.
T Consensus 324 -~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~-~~ 363 (425)
T 1r5m_A 324 -ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK-LN 363 (425)
T ss_dssp -EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH-HH
T ss_pred -EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC-Cc
Confidence 22222 2233445554 456766664 5799999863 44
No 22
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=98.23 E-value=0.00062 Score=75.40 Aligned_cols=243 Identities=13% Similarity=0.104 Sum_probs=142.2
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCC-----------CCCeeEEEE
Q 003405 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFS-----------KKPILSMEV 83 (823)
Q Consensus 17 ~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~-----------k~~I~qI~~ 83 (823)
..|+|++.. ++.|+.|+.||.|.+|++........ .....+.+...++++. ..+|..|..
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~-------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~ 101 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS-------HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW 101 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C-------CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc-------ccccceeEecccccccccccccccccccCceEEEEE
Confidence 478988766 46999999999999999875431100 0112344444555432 178999999
Q ss_pred eccc--CceeeEeC-c-EEEEeCCCCccc-----------------------------------------ccccCCCCcE
Q 003405 84 LASR--QLLLSLSE-S-IAFHRLPNLETI-----------------------------------------AVLTKAKGAN 118 (823)
Q Consensus 84 ~~~~--~~Ll~l~d-~-l~~~~L~~l~~~-----------------------------------------~~i~~~kg~~ 118 (823)
.|.. +.+++.+. + |++|++.+-+.. ........++
T Consensus 102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 181 (447)
T 3dw8_B 102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN 181 (447)
T ss_dssp CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence 9987 56666665 4 999987542110 0012234577
Q ss_pred EEEeeCCCceEEEEEcCeEEEEEEcC-CCceeEe--e--ee-cCCCCceEEEec--C-CeEEEEEc-CceEEEEcCCCCe
Q 003405 119 VYSWDDRRGFLCFARQKRVCIFRHDG-GRGFVEV--K--DF-GVPDTVKSMSWC--G-ENICIAIR-KGYMILNATNGAL 188 (823)
Q Consensus 119 ~fa~~~~~~~l~V~~kkki~l~~~~~-~~~f~~~--k--ei-~~~~~~~~l~~~--~-~~i~v~~~-~~y~lidl~~~~~ 188 (823)
+++++++...++.+..+.|.+|.... +..+..+ + .+ ...+.+.+++|. + +.++.|.. ....++|+.+++.
T Consensus 182 ~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 182 SISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp EEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred EEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 88888876677777777788887762 2112111 0 11 235679999998 3 56777777 4578999998764
Q ss_pred ----eeccCCCCC------------CCCEEEEccCCeEEEE-eCCeEEEEcCC--CccccCCceeecCCC----------
Q 003405 189 ----SEVFPSGRI------------GPPLVVSLLSGELLLG-KENIGVFVDQN--GKLLQADRICWSEAP---------- 239 (823)
Q Consensus 189 ----~~L~~~~~~------------~~p~i~~~~~~EfLL~-~~~~gvfv~~~--G~~~~~~~i~w~~~P---------- 239 (823)
...+..... .--.+...+++.+|++ .++...+.|.. |.+. ..+.-...+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~--~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPV--ETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCS--CCEESCGGGTTTHHHHHHT
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCcccc--ceeeccccccccccccccc
Confidence 333332211 1112344577888774 44444556653 4433 222211111
Q ss_pred ------cEEEEe--CCEEEEEeC-CeEEEEEccCCCcee
Q 003405 240 ------IAVIIQ--KPYAIALLP-RRVEVRSLRVPYALI 269 (823)
Q Consensus 240 ------~~v~~~--~PYll~~~~-~~ieV~~l~~~~~lv 269 (823)
..+.+. ..||++... +.|.|+++. ++..+
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~-~~~~~ 377 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN-TKRDI 377 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETT-TCCEE
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcC-CCcce
Confidence 114443 467766664 679999986 45544
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=98.22 E-value=0.0012 Score=70.81 Aligned_cols=241 Identities=9% Similarity=0.017 Sum_probs=140.7
Q ss_pred cCCCCcEEEEEE--------eCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEe
Q 003405 13 SNCSPKIDAVAS--------YGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVL 84 (823)
Q Consensus 13 ~~~~~~I~ci~~--------~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~ 84 (823)
..-...|+|++. .++.|+.|+.||.|.+|++....... ..-...+.+.+ +..+|..+...
T Consensus 18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~-----------~~~~~~~~l~~-h~~~V~~~~~~ 85 (343)
T 2xzm_R 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG-----------YFGIPHKALTG-HNHFVSDLALS 85 (343)
T ss_dssp ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS-----------BSEEEEEEECC-CSSCEEEEEEC
T ss_pred ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc-----------ccccccchhcc-CCCceEEEEEC
Confidence 333457999976 45689999999999999976432110 00011233333 36789999999
Q ss_pred cccCceeeEeC-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeee-ecCCCC
Q 003405 85 ASRQLLLSLSE-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKD-FGVPDT 159 (823)
Q Consensus 85 ~~~~~Ll~l~d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~ke-i~~~~~ 159 (823)
|...++++-+. + |++|++.+-+....+. ....+.+++++++...++.+ ..+.|.+|...+.. .....+ ..-.+.
T Consensus 86 ~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~ 164 (343)
T 2xzm_R 86 QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDW 164 (343)
T ss_dssp SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSC
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCce
Confidence 98888888775 5 9999998765544433 33468888888877777666 56778888876321 111111 123456
Q ss_pred ceEEEecC------------CeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-E-eCCeEEEEcCC
Q 003405 160 VKSMSWCG------------ENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-G-KENIGVFVDQN 224 (823)
Q Consensus 160 ~~~l~~~~------------~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~-~~~~gvfv~~~ 224 (823)
+.+++|.. ..++.|.. ....+.|........+.... ..-..+...+++.+|+ + .|+...+.|..
T Consensus 165 v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 165 VSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHE-SNVNHLSISPNGKYIATGGKDKKLLIWDIL 243 (343)
T ss_dssp EEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCS-SCEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred eeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCcc-ccceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 88888863 34555555 45677884332222222211 1112234457777777 3 35566666752
Q ss_pred -CccccCCceeecCCCcEEEEe--CCEEEEEeCCeEEEEEccCCCcee
Q 003405 225 -GKLLQADRICWSEAPIAVIIQ--KPYAIALLPRRVEVRSLRVPYALI 269 (823)
Q Consensus 225 -G~~~~~~~i~w~~~P~~v~~~--~PYll~~~~~~ieV~~l~~~~~lv 269 (823)
+... ...+.-......+++. .+++.+-.++.+.|+++. ++...
T Consensus 244 ~~~~~-~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~-~~~~~ 289 (343)
T 2xzm_R 244 NLTYP-QREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLM-TQSKA 289 (343)
T ss_dssp CCSSC-SEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESS-SCCSC
T ss_pred CCccc-ceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeC-CCCCC
Confidence 2211 1111112233445553 346666667789999986 34433
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.22 E-value=5.8e-05 Score=83.45 Aligned_cols=201 Identities=13% Similarity=0.137 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHhcCChhhHHhhhc-CCCcccHHHHHHHHHhcCcHHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCccc
Q 003405 506 ILDTALLQALLLTGQSSAALELLK-GLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDE 584 (823)
Q Consensus 506 ~vDT~Ll~~y~~~~~~~~l~~ll~-~~n~c~~~~~~~~L~~~~~~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~ 584 (823)
.+=|-|-.+|.+.++. .+.+-++ -...+++..+...+.+...+.+|+.+|...++|+.|..+..+-.... |
T Consensus 242 ~~ftel~il~~ky~p~-k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a----~--- 313 (449)
T 1b89_A 242 GMFTELAILYSKFKPQ-KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDA----W--- 313 (449)
T ss_dssp HHHHHHHHHHHTTCHH-HHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTT----C---
T ss_pred HHHHHHHHHHHhcCHH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhh----h---
Confidence 4667788899998764 4443333 24678899999999999999999999999999999999887642111 1
Q ss_pred ccccCChHHHHHHhhcCCCCChhhHHHhhhhhhhcCcccccccccc--CCCChHHHHHHHhhcC-chhHHHHHHHHhhcc
Q 003405 585 HTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLS--GNIPADLVNSYLKQYS-PSMQGRYLELMLAMN 661 (823)
Q Consensus 585 ~~~~~~~~~~i~yL~~L~~~~~~li~~y~~wll~~~p~~~~~if~~--~~l~~~~Vl~~L~~~~-~~~~~~YLE~li~~~ 661 (823)
.+..-.+.+.+ ..+.++..+=..+-++..|..--.+++. +.+++++|+.++...+ -.+...||+.+-..
T Consensus 314 -----~~~~f~~~~~k--v~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~- 385 (449)
T 1b89_A 314 -----KEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH- 385 (449)
T ss_dssp -----CHHHHHHHHHH--CSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT-
T ss_pred -----hhHHHHHHHhc--hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHHHh-
Confidence 23334455554 3478999999999999999986666554 5799999999998764 35678899887532
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccchHHHHHHHHHhhhcCCCChHHHhccCCCCchhh---HHHHHh
Q 003405 662 ENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYE---ERAILL 738 (823)
Q Consensus 662 ~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kLl~fL~~s~~Yd~~~~L~~~~~~~l~~---e~~~Ll 738 (823)
-...+-..|-.+|++.- +.+.|+.-+..-+.||.-.+..++..++|.+ --++||
T Consensus 386 ---n~~~vnealn~l~ieee--------------------d~~~lr~si~~~~nfd~~~l~~~le~h~l~~~r~iaa~~~ 442 (449)
T 1b89_A 386 ---NNKSVNESLNNLFITEE--------------------DYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLF 442 (449)
T ss_dssp ---CCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHCCCSCHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHhhh--------------------hHHHHHHHHHHhcCcCHHHHHHHHhcCchHHHHHHHHHHH
Confidence 35778888999999851 4688888888899999999999999987655 557799
Q ss_pred hccccHH
Q 003405 739 GKMNQHE 745 (823)
Q Consensus 739 ~klg~h~ 745 (823)
.|-++++
T Consensus 443 ~~~~~~~ 449 (449)
T 1b89_A 443 KGNNRWK 449 (449)
T ss_dssp C------
T ss_pred HhccCCC
Confidence 8887763
No 25
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=98.21 E-value=0.0012 Score=69.43 Aligned_cols=237 Identities=9% Similarity=0.095 Sum_probs=148.5
Q ss_pred CCCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceee
Q 003405 15 CSPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (823)
Q Consensus 15 ~~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~ 92 (823)
-...|.|++.. ++.|+.|+.||.+.+|++... ...+.+.. +..+|..+...+..+.+++
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~------------------~~~~~~~~-~~~~v~~~~~~~~~~~l~s 72 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ------------------VEVRSIQV-TETPVRAGKFIARKNWIIV 72 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT------------------EEEEEEEC-CSSCEEEEEEEGGGTEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC------------------ceeEEeec-cCCcEEEEEEeCCCCEEEE
Confidence 35679998876 468999999999999997532 12333332 3678999999999999888
Q ss_pred EeC-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeec-CCCCceEEEecC
Q 003405 93 LSE-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFG-VPDTVKSMSWCG 167 (823)
Q Consensus 93 l~d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~-~~~~~~~l~~~~ 167 (823)
-++ + |++|++.+-+.+..+. ....+++++++++...++.+ ..+.|.+|.+..+... .+.+. -.+.+.+++|..
T Consensus 73 ~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~--~~~~~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL--EQTFEGHEHFVMCVAFNP 150 (304)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEE--EEEECCCCSCEEEEEECT
T ss_pred ECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcch--hhhhcccCCcEEEEEECC
Confidence 886 4 9999998766554433 23468889998887777776 4567889888743211 22222 246789999973
Q ss_pred ---CeEEEEEc-CceEEEEcCCCCeeeccCCCC-CCCCEEEEc--cCCeEEE-Ee-CCeEEEEcCC-CccccCCceeecC
Q 003405 168 ---ENICIAIR-KGYMILNATNGALSEVFPSGR-IGPPLVVSL--LSGELLL-GK-ENIGVFVDQN-GKLLQADRICWSE 237 (823)
Q Consensus 168 ---~~i~v~~~-~~y~lidl~~~~~~~L~~~~~-~~~p~i~~~--~~~EfLL-~~-~~~gvfv~~~-G~~~~~~~i~w~~ 237 (823)
..++.|.. ....+.|+.++.....+..+. .....+... +++.+|+ +. |....+.|.. |+.. .++.-..
T Consensus 151 ~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~--~~~~~h~ 228 (304)
T 2ynn_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV--ATLEGHM 228 (304)
T ss_dssp TCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE--EEEECCS
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc--eeeCCCC
Confidence 35666666 557888997765332222221 111222222 3556666 33 4455555643 3221 2222222
Q ss_pred CC-cEEEEe--CCEEEEEeC-CeEEEEEccCCCceeEEEeeC
Q 003405 238 AP-IAVIIQ--KPYAIALLP-RRVEVRSLRVPYALIQTIVLQ 275 (823)
Q Consensus 238 ~P-~~v~~~--~PYll~~~~-~~ieV~~l~~~~~lvQ~i~l~ 275 (823)
.+ ..+++. .++|++... +.|.|+++. ++.+.+++...
T Consensus 229 ~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~-~~~~~~~~~~~ 269 (304)
T 2ynn_A 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSS-TYKVEKTLNVG 269 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETT-TCCEEEEECCS
T ss_pred CCEEEEEECCCCCEEEEEcCCCeEEEEECC-CCceeeeccCC
Confidence 22 233343 356777665 679999996 58888887654
No 26
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=98.21 E-value=0.00063 Score=72.38 Aligned_cols=241 Identities=14% Similarity=0.125 Sum_probs=150.0
Q ss_pred cCCCCcEEEEEEeC---CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCc
Q 003405 13 SNCSPKIDAVASYG---LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQL 89 (823)
Q Consensus 13 ~~~~~~I~ci~~~~---~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~ 89 (823)
..=...|+|++... +.|+-|+.||.+.+|++..... ..-...+.++++ ..+|..+...+..+.
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~-------------~~~~~~~~~~~h-~~~v~~~~~s~dg~~ 79 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-------------KFGVPVRSFKGH-SHIVQDCTLTADGAY 79 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT-------------EEEEEEEEEECC-SSCEEEEEECTTSSE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc-------------cccccceEEeCC-cccEEEEEECCCCCE
Confidence 33356799988753 5899999999999998753221 001123344443 679999999999888
Q ss_pred eeeEeC-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeecCCCCceEEEe
Q 003405 90 LLSLSE-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSW 165 (823)
Q Consensus 90 Ll~l~d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~ 165 (823)
+++.+. + |++|++.+-+....+. ....+.+++++++...++.+ ..+.|.+|...+. ....+ ..-.+.+.++.|
T Consensus 80 l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~--~~h~~~v~~~~~ 156 (319)
T 3frx_A 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATL--LGHNDWVSQVRV 156 (319)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEE--CCCSSCEEEEEE
T ss_pred EEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEE--eccCCcEEEEEE
Confidence 888875 5 9999998766554433 33467888888877677776 4567888887632 22211 122456778887
Q ss_pred cCC--------eEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-E-eCCeEEEEcCCCccccCCcee
Q 003405 166 CGE--------NICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-G-KENIGVFVDQNGKLLQADRIC 234 (823)
Q Consensus 166 ~~~--------~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~-~~~~gvfv~~~G~~~~~~~i~ 234 (823)
..+ .++.|.. ....+.|+.+++...-+......-..+...+++.+|+ + .|+...+.|...... ...+.
T Consensus 157 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~-~~~~~ 235 (319)
T 3frx_A 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA-MYTLS 235 (319)
T ss_dssp CCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE-EEEEE
T ss_pred ccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-EEEec
Confidence 632 4555555 5678899988765443332211112344457777776 3 345666667543211 12333
Q ss_pred ecCCCcEEEEe--CCEEEEEeCCeEEEEEccCCCceeEEE
Q 003405 235 WSEAPIAVIIQ--KPYAIALLPRRVEVRSLRVPYALIQTI 272 (823)
Q Consensus 235 w~~~P~~v~~~--~PYll~~~~~~ieV~~l~~~~~lvQ~i 272 (823)
-......+++. ..++.+...+.+.|+++. ++.+++.+
T Consensus 236 ~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~-~~~~~~~~ 274 (319)
T 3frx_A 236 AQDEVFSLAFSPNRYWLAAATATGIKVFSLD-PQYLVDDL 274 (319)
T ss_dssp CCSCEEEEEECSSSSEEEEEETTEEEEEEET-TEEEEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeC-cCeeeecc
Confidence 33344455554 457777778889999985 46666655
No 27
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.20 E-value=0.0011 Score=73.71 Aligned_cols=226 Identities=12% Similarity=0.153 Sum_probs=143.3
Q ss_pred cEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC-c
Q 003405 18 KIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-S 96 (823)
Q Consensus 18 ~I~ci~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d-~ 96 (823)
.++|+...++.|+.|+.||.|.+|++... +..+.+.+ +..+|..+..- .+.+++.+. +
T Consensus 121 v~~~~~~~g~~l~sg~~dg~i~vwd~~~~------------------~~~~~~~~-h~~~v~~~~~~--~~~l~s~~~dg 179 (445)
T 2ovr_B 121 VITCLQFCGNRIVSGSDDNTLKVWSAVTG------------------KCLRTLVG-HTGGVWSSQMR--DNIIISGSTDR 179 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTC------------------CEEEECCC-CSSCEEEEEEE--TTEEEEEETTS
T ss_pred cEEEEEEcCCEEEEEECCCcEEEEECCCC------------------cEEEEEcC-CCCCEEEEEec--CCEEEEEeCCC
Confidence 47899999999999999999999997532 12334443 35788888775 456666654 5
Q ss_pred -EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeec-CCCCceEEEecCCeEEE
Q 003405 97 -IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFG-VPDTVKSMSWCGENICI 172 (823)
Q Consensus 97 -l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~-~~~~~~~l~~~~~~i~v 172 (823)
|.+|++.+.+....+. ....+.+++.+. ..++++ ..+.|.+|....++. .+.+. -...+.++.|.++.++.
T Consensus 180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~~~~~l~~ 254 (445)
T 2ovr_B 180 TLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQC---LHVLMGHVAAVRCVQYDGRRVVS 254 (445)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEESSSCCE---EEEEECCSSCEEEEEECSSCEEE
T ss_pred eEEEEECCcCcEEEEECCCCCcEEEEEecC--CEEEEEeCCCEEEEEECCCCcE---EEEEcCCcccEEEEEECCCEEEE
Confidence 9999998776554443 233566776653 346666 456788888764432 22222 34688999998888888
Q ss_pred EEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-E-eCCeEEEEcC-CCccccCCceee-cCCCcEEEEeCC
Q 003405 173 AIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-G-KENIGVFVDQ-NGKLLQADRICW-SEAPIAVIIQKP 247 (823)
Q Consensus 173 ~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~-~~~~gvfv~~-~G~~~~~~~i~w-~~~P~~v~~~~P 247 (823)
|.. ....++|+.+++...-+.... .++.....++.+++ + .|+...+.|. .|+.. ..+.- ......+.+...
T Consensus 255 ~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~ 330 (445)
T 2ovr_B 255 GAYDFMVKVWDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI--HTLTGHQSLTSGMELKDN 330 (445)
T ss_dssp EETTSCEEEEEGGGTEEEEEECCCS--SCEEEEEECSSEEEEEETTSCEEEEETTTCCEE--EEECCCCSCEEEEEEETT
T ss_pred EcCCCEEEEEECCCCcEeEEecCCC--CceEEEEECCCEEEEEeCCCeEEEEECCCCCEE--EEEcCCcccEEEEEEeCC
Confidence 887 457889998876544443221 23322212555554 4 3555556664 34432 11111 223345666777
Q ss_pred EEEEEeC-CeEEEEEccCCCceeEEEee
Q 003405 248 YAIALLP-RRVEVRSLRVPYALIQTIVL 274 (823)
Q Consensus 248 Yll~~~~-~~ieV~~l~~~~~lvQ~i~l 274 (823)
++++... +.|.|+++. ++..++++..
T Consensus 331 ~l~~~~~dg~i~vwd~~-~~~~~~~~~~ 357 (445)
T 2ovr_B 331 ILVSGNADSTVKIWDIK-TGQCLQTLQG 357 (445)
T ss_dssp EEEEEETTSCEEEEETT-TCCEEEEECS
T ss_pred EEEEEeCCCeEEEEECC-CCcEEEEEcc
Confidence 8777775 679999996 4777777754
No 28
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=98.19 E-value=0.00041 Score=74.60 Aligned_cols=234 Identities=14% Similarity=0.100 Sum_probs=137.8
Q ss_pred cCCCCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecc--cC
Q 003405 13 SNCSPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS--RQ 88 (823)
Q Consensus 13 ~~~~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~--~~ 88 (823)
..-...|+|++.. ++.|+.|+.||.|.+|++... .....+.+.+ +..+|..+...+. .+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----------------~~~~~~~~~~-h~~~v~~~~~~~~~~~~ 70 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE----------------THKLIDTLTG-HEGPVWRVDWAHPKFGT 70 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT----------------EEEEEEEECC-CSSCEEEEEECCGGGCS
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC----------------cceeeeEecC-CCCcEEEEEeCCCCCCC
Confidence 3335689998866 578999999999999997532 1223334443 3679999998876 67
Q ss_pred ceeeEeC-c-EEEEeCCCCc--cccccc-CCCCcEEEEeeCC--CceEEEE-EcCeEEEEEEcCCCceeEeeeecCCCCc
Q 003405 89 LLLSLSE-S-IAFHRLPNLE--TIAVLT-KAKGANVYSWDDR--RGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTV 160 (823)
Q Consensus 89 ~Ll~l~d-~-l~~~~L~~l~--~~~~i~-~~kg~~~fa~~~~--~~~l~V~-~kkki~l~~~~~~~~f~~~kei~~~~~~ 160 (823)
++++.+. + |.+|++.+-+ ...... ....+++++++++ ...++++ ..+.|.+|.+..........-..-+..+
T Consensus 71 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v 150 (379)
T 3jrp_A 71 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 150 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCE
T ss_pred EEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCce
Confidence 7777775 5 9999987654 332222 3356888888877 4566666 5567888888754222222112345688
Q ss_pred eEEEecC---------------CeEEEEEc-CceEEEEcCCCCee----eccCCCCCCCCEEEEccC---CeEEEE--eC
Q 003405 161 KSMSWCG---------------ENICIAIR-KGYMILNATNGALS----EVFPSGRIGPPLVVSLLS---GELLLG--KE 215 (823)
Q Consensus 161 ~~l~~~~---------------~~i~v~~~-~~y~lidl~~~~~~----~L~~~~~~~~p~i~~~~~---~EfLL~--~~ 215 (823)
.+++|.. +.++.|.. ....++|+.++... ..+.......-.+...++ +.++++ .|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 230 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence 9999974 46777776 45788898876422 111111111112334466 677663 34
Q ss_pred CeEEEEcCCCc-cc-cCCcee---ecCCCcEEEEe--CCEEEEEeC-CeEEEEEcc
Q 003405 216 NIGVFVDQNGK-LL-QADRIC---WSEAPIAVIIQ--KPYAIALLP-RRVEVRSLR 263 (823)
Q Consensus 216 ~~gvfv~~~G~-~~-~~~~i~---w~~~P~~v~~~--~PYll~~~~-~~ieV~~l~ 263 (823)
+...+.+.... .. ....+. .......+.+. ..++++... +.|.|+++.
T Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 55555554332 10 001111 22233444543 346665554 568888875
No 29
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=98.17 E-value=0.00018 Score=77.11 Aligned_cols=152 Identities=14% Similarity=0.136 Sum_probs=105.0
Q ss_pred CcEEEEEEeCC------EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEec-ccCc
Q 003405 17 PKIDAVASYGL------KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLA-SRQL 89 (823)
Q Consensus 17 ~~I~ci~~~~~------~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~-~~~~ 89 (823)
..|+|++...+ .|+.|+.+|.|.+|++... +....+.+ +..+|..+...| ..++
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~------------------~~~~~~~~-~~~~i~~~~~~~~~~~~ 130 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM------------------QCIKHYVG-HGNAINELKFHPRDPNL 130 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC------------------CEEEEEES-CCSCEEEEEECSSCTTE
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc------------------eEeeeecC-CCCcEEEEEECCCCCCE
Confidence 46888776643 7999999999999987632 12334443 367999999999 7777
Q ss_pred eeeEeC-c-EEEEeCCCCcccccc----cCCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEee----------
Q 003405 90 LLSLSE-S-IAFHRLPNLETIAVL----TKAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVK---------- 152 (823)
Q Consensus 90 Ll~l~d-~-l~~~~L~~l~~~~~i----~~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~k---------- 152 (823)
+++.+. + |.+|++.+-+....+ .....+..++++++...++++. .+.|.+|....++....++
T Consensus 131 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 210 (366)
T 3k26_A 131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT 210 (366)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGC
T ss_pred EEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCC
Confidence 777775 5 999999876655443 2345788888888777777764 5678888776321100000
Q ss_pred ---------------e-ecCCCCceEEEecCCeEEEEEc-CceEEEEcCCCC
Q 003405 153 ---------------D-FGVPDTVKSMSWCGENICIAIR-KGYMILNATNGA 187 (823)
Q Consensus 153 ---------------e-i~~~~~~~~l~~~~~~i~v~~~-~~y~lidl~~~~ 187 (823)
. ....+.+.+++|.++.++.|.. ....++|+.++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 262 (366)
T 3k26_A 211 NRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKME 262 (366)
T ss_dssp SSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTT
T ss_pred cccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCcc
Confidence 0 0135689999999888888876 456788988764
No 30
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.16 E-value=0.00084 Score=74.68 Aligned_cols=220 Identities=13% Similarity=0.215 Sum_probs=138.0
Q ss_pred CcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC-
Q 003405 17 PKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE- 95 (823)
Q Consensus 17 ~~I~ci~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d- 95 (823)
..|.|+...++.++.|+.||.|.+|+.... +....+.+ +..+|..+.. ..+.+++-+.
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~------------------~~~~~~~~-h~~~v~~l~~--~~~~l~sg~~d 192 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTL------------------ECKRILTG-HTGSVLCLQY--DERVIITGSSD 192 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSC------------------CEEEEECC-CSSCEEEEEC--CSSEEEEEETT
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCC------------------eEEEEEcC-CCCcEEEEEE--CCCEEEEEcCC
Confidence 469999999999999999999999986532 12334443 3678988877 4566666664
Q ss_pred c-EEEEeCCCCcccccccC-CCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeee-cCCCCceEEEecCCeEE
Q 003405 96 S-IAFHRLPNLETIAVLTK-AKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDF-GVPDTVKSMSWCGENIC 171 (823)
Q Consensus 96 ~-l~~~~L~~l~~~~~i~~-~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei-~~~~~~~~l~~~~~~i~ 171 (823)
+ |.+|++.+.+....+.. ...+.+++.+ .+.++++ ..+.|.+|....+......+.+ .-.+.+.+++|.++.++
T Consensus 193 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 270 (435)
T 1p22_A 193 STVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV 270 (435)
T ss_dssp SCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE
T ss_pred CeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEE
Confidence 5 99999987665544332 2356666665 3466666 5567888888754332222222 23468899999999999
Q ss_pred EEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-Ee-CCeEEEEcCC-CccccCCceee-cCCCcEEEEeC
Q 003405 172 IAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-GK-ENIGVFVDQN-GKLLQADRICW-SEAPIAVIIQK 246 (823)
Q Consensus 172 v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~~-~~~gvfv~~~-G~~~~~~~i~w-~~~P~~v~~~~ 246 (823)
.|.. ....++|+.+++...-+.... .++.+...++.+++ +. |+...+.|.. |... ..+.- ......+.+..
T Consensus 271 s~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~ 346 (435)
T 1p22_A 271 SASGDRTIKVWNTSTCEFVRTLNGHK--RGIACLQYRDRLVVSGSSDNTIRLWDIECGACL--RVLEGHEELVRCIRFDN 346 (435)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEEETTEEEEEETTSCEEEEETTTCCEE--EEECCCSSCEEEEECCS
T ss_pred EEeCCCeEEEEECCcCcEEEEEcCCC--CcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEE--EEEeCCcCcEEEEEecC
Confidence 9987 457889999887654444322 23322222344444 43 4555666653 4432 12221 22334566666
Q ss_pred CEEEEEeC-CeEEEEEcc
Q 003405 247 PYAIALLP-RRVEVRSLR 263 (823)
Q Consensus 247 PYll~~~~-~~ieV~~l~ 263 (823)
.++++... +.|.|+++.
T Consensus 347 ~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 347 KRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp SEEEEEETTSCEEEEEHH
T ss_pred CEEEEEeCCCcEEEEECC
Confidence 67776664 679999985
No 31
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=98.15 E-value=0.00082 Score=79.83 Aligned_cols=241 Identities=15% Similarity=0.143 Sum_probs=149.0
Q ss_pred CCcEEEEEEe---CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceee
Q 003405 16 SPKIDAVASY---GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (823)
Q Consensus 16 ~~~I~ci~~~---~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~ 92 (823)
...|+|++.. ++.|+.|+.||.|.+|++...... .-...+.+.+ +..+|..+...+..++|++
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~-------------~~~~~~~~~~-h~~~v~~v~~s~~g~~l~s 447 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA-------------YGVAQRRLTG-HSHFVEDVVLSSDGQFALS 447 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC-------------SCEEEEEEEC-CSSCEEEEEECTTSSEEEE
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc-------------cccccceecC-CCCcEEEEEECCCCCEEEE
Confidence 4579999875 257899999999999998753211 0111233333 3678999999999998888
Q ss_pred EeC-c-EEEEeCCCCcccccc-cCCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEeee-ecCCCCceEEEecC
Q 003405 93 LSE-S-IAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKD-FGVPDTVKSMSWCG 167 (823)
Q Consensus 93 l~d-~-l~~~~L~~l~~~~~i-~~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~ke-i~~~~~~~~l~~~~ 167 (823)
.+. + |++|++.+-.....+ .....+.+++++++...++.+. .+.|.+|...+...+..... -.-.+.+.+++|..
T Consensus 448 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 448 GSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred EeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence 875 5 999999776544433 2345688888888777777764 56677776543211111111 11235688999974
Q ss_pred C----eEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-E-eCCeEEEEcC-CCccccCCceeecCCC
Q 003405 168 E----NICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-G-KENIGVFVDQ-NGKLLQADRICWSEAP 239 (823)
Q Consensus 168 ~----~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~-~~~~gvfv~~-~G~~~~~~~i~w~~~P 239 (823)
+ .++.|.. +...+.|+.+++....+......-..+...+++.+++ + .|+...+.|. .|+.. ..+.-....
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~--~~~~~~~~v 605 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL--YSLEANSVI 605 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEE--ECCBCSSCE
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE--EEecCCCcE
Confidence 2 4555555 6688999998876554432221112344456777776 3 3455555564 44432 122222233
Q ss_pred cEEEEe--CCEEEEEeCCeEEEEEccCCCceeEEEe
Q 003405 240 IAVIIQ--KPYAIALLPRRVEVRSLRVPYALIQTIV 273 (823)
Q Consensus 240 ~~v~~~--~PYll~~~~~~ieV~~l~~~~~lvQ~i~ 273 (823)
..+.+. ..++++-..+.|.|+++. ++.+++++.
T Consensus 606 ~~~~~sp~~~~l~~~~~~~i~iwd~~-~~~~~~~~~ 640 (694)
T 3dm0_A 606 HALCFSPNRYWLCAATEHGIKIWDLE-SKSIVEDLK 640 (694)
T ss_dssp EEEEECSSSSEEEEEETTEEEEEETT-TTEEEEEEC
T ss_pred EEEEEcCCCcEEEEEcCCCEEEEECC-CCCChhhhc
Confidence 344443 346666677889999996 577777664
No 32
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=98.13 E-value=0.0022 Score=70.38 Aligned_cols=228 Identities=12% Similarity=0.088 Sum_probs=135.1
Q ss_pred cEEEEEEe---CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe
Q 003405 18 KIDAVASY---GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 18 ~I~ci~~~---~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
.+.++..+ ++.|+.|+.+|.|.+|++... .....+.+ +..+|..+...|..+.+++.+
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------------------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s 158 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN------------------LQREIDQA-HVSEITKLKFFPSGEALISSS 158 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSC------------------EEEEETTS-SSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCc------------------ceeeeccc-ccCccEEEEECCCCCEEEEEe
Confidence 55555543 579999999999999986531 12222222 367999999999988888877
Q ss_pred C-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEeeee-cCCCCceE-------
Q 003405 95 E-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDF-GVPDTVKS------- 162 (823)
Q Consensus 95 d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kei-~~~~~~~~------- 162 (823)
. + |.+|++.+.+....+. ....+++++++++...++.+. .+.|.+|....++....++.. ...+.+.+
T Consensus 159 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 238 (420)
T 3vl1_A 159 QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGT 238 (420)
T ss_dssp TTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECC
T ss_pred CCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCC
Confidence 5 5 9999998766554443 334688889988877777775 456888887644222222110 11233444
Q ss_pred --------------EEec--CCeEEEEEcC-ceEEEEcCCCCeeeccCCCCCC-CCEEEEccCCe-EEE-Ee-CCeEEEE
Q 003405 163 --------------MSWC--GENICIAIRK-GYMILNATNGALSEVFPSGRIG-PPLVVSLLSGE-LLL-GK-ENIGVFV 221 (823)
Q Consensus 163 --------------l~~~--~~~i~v~~~~-~y~lidl~~~~~~~L~~~~~~~-~p~i~~~~~~E-fLL-~~-~~~gvfv 221 (823)
++|. |+.++.|... ...++|+.+++....+..+... ...+...+++. +++ +. |+...+.
T Consensus 239 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vw 318 (420)
T 3vl1_A 239 DRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQW 318 (420)
T ss_dssp CSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred cceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEE
Confidence 4443 4568778775 5789999988754444332211 12234446665 665 43 4555566
Q ss_pred cCCCccccCCceee-cCCCcE-EEEeCC-EEEEEeC-CeEEEEEccC
Q 003405 222 DQNGKLLQADRICW-SEAPIA-VIIQKP-YAIALLP-RRVEVRSLRV 264 (823)
Q Consensus 222 ~~~G~~~~~~~i~w-~~~P~~-v~~~~P-Yll~~~~-~~ieV~~l~~ 264 (823)
|..........+.- ...|.. +.+... ++++... +.|.|+++..
T Consensus 319 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 319 DLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp ETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred EcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 65432110122332 334443 333333 5555543 5788998864
No 33
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=98.13 E-value=0.00046 Score=74.59 Aligned_cols=227 Identities=9% Similarity=0.019 Sum_probs=132.7
Q ss_pred cEEEEEEeC-CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC-
Q 003405 18 KIDAVASYG-LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE- 95 (823)
Q Consensus 18 ~I~ci~~~~-~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d- 95 (823)
.|.|++... ++|+.|+.||.|.+|++..... .........+ +..+|..|...|..+.|++-+.
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~--------------~~~~~~~~~~-H~~~V~~v~~spdg~~l~sgs~d 148 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENET--------------LIVSKFCKYE-HDDIVSTVSVLSSGTQAVSGSKD 148 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTSS--------------CEEEEEEEEC-CSSCEEEEEECTTSSEEEEEETT
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCCc--------------eeEeeccccC-CCCCEEEEEECCCCCEEEEEeCC
Confidence 588887654 6899999999999999865321 1111111122 3678999999999999888875
Q ss_pred c-EEEEeCCCCcccccccC-CCCcEEEEeeCCCc-eEEEE-EcCeEEEEEEcCCCceeEeeeecCCCCceEEEecC---C
Q 003405 96 S-IAFHRLPNLETIAVLTK-AKGANVYSWDDRRG-FLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCG---E 168 (823)
Q Consensus 96 ~-l~~~~L~~l~~~~~i~~-~kg~~~fa~~~~~~-~l~V~-~kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~~---~ 168 (823)
+ |++|++.+-+.+..+.. ...+++++++++.. .++.+ ..+.|.+|....++....+....-...+.+++|.. .
T Consensus 149 ~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 228 (344)
T 4gqb_B 149 ICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSE 228 (344)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTT
T ss_pred CeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCc
Confidence 5 99999987765554432 45678888877654 44545 45778888776443222222112234688999973 3
Q ss_pred eEEEEEcC-ceEEEEcCCCCeeeccCCCCCCCCEEEEccCC-eEEE-Ee-CCeEEEEcCCCccccCCceeecC---CCcE
Q 003405 169 NICIAIRK-GYMILNATNGALSEVFPSGRIGPPLVVSLLSG-ELLL-GK-ENIGVFVDQNGKLLQADRICWSE---APIA 241 (823)
Q Consensus 169 ~i~v~~~~-~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~-EfLL-~~-~~~gvfv~~~G~~~~~~~i~w~~---~P~~ 241 (823)
.++.|... ...++|+.+++...-+......--.+...+++ .+|+ +. |....+.|..... .+...+ ....
T Consensus 229 ~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~----~~~~~~H~~~V~~ 304 (344)
T 4gqb_B 229 VFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE----LFRSQAHRDFVRD 304 (344)
T ss_dssp EEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE----EEEECCCSSCEEE
T ss_pred ceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc----EEEEcCCCCCEEE
Confidence 46667764 57889999876433332211111223344555 4555 33 4455555643321 222222 2344
Q ss_pred EEEe--CCEEEEE-e-CCeEEEEEcc
Q 003405 242 VIIQ--KPYAIAL-L-PRRVEVRSLR 263 (823)
Q Consensus 242 v~~~--~PYll~~-~-~~~ieV~~l~ 263 (823)
+++. .+++++- . ++.|-++++.
T Consensus 305 v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 305 ATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp EEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 5553 3555543 3 4677777774
No 34
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=98.13 E-value=0.003 Score=68.53 Aligned_cols=245 Identities=13% Similarity=0.125 Sum_probs=142.2
Q ss_pred CCCcEEEEEEe---CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeee--ee----cCCCCCCeeEEEEec
Q 003405 15 CSPKIDAVASY---GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELER--TI----SGFSKKPILSMEVLA 85 (823)
Q Consensus 15 ~~~~I~ci~~~---~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~--~~----~~~~k~~I~qI~~~~ 85 (823)
-...|+|++.. ++.|+.|+.||.|.+|++....... .+.... .. ...+..+|..+...|
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 109 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS------------YYTCKAVCSIGRDHPDVHRYSVETVQWYP 109 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS------------CEEECEEEEECTTCTTCCSSCEEEEEECT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc------------eEeccccccccccccccCCCcEEEEEEcc
Confidence 35689999885 4789999999999999987543210 111000 00 012467999999999
Q ss_pred -ccCceeeEeC-c-EEEEeCCCCcccccccCCCCcEEEEeeCCC---ceEEEE-EcCeEEEEEEcCCCceeEeeeecCCC
Q 003405 86 -SRQLLLSLSE-S-IAFHRLPNLETIAVLTKAKGANVYSWDDRR---GFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPD 158 (823)
Q Consensus 86 -~~~~Ll~l~d-~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~---~~l~V~-~kkki~l~~~~~~~~f~~~kei~~~~ 158 (823)
..+++++.+. + |.+|++.+.+....+.....+..++..+.. ..++++ ..+.|.+|....+.....++ .-.+
T Consensus 110 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~ 187 (408)
T 4a11_B 110 HDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ--GHRQ 187 (408)
T ss_dssp TCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC--CCCS
T ss_pred CCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec--CCCC
Confidence 5567777764 5 999999887665555445566677665533 256665 45678888876443222221 1346
Q ss_pred CceEEEecC--C-eEEEEEc-CceEEEEcCCCC-e-eeccCC------------CCCCCCE--EEEccCCeEEE-E-eCC
Q 003405 159 TVKSMSWCG--E-NICIAIR-KGYMILNATNGA-L-SEVFPS------------GRIGPPL--VVSLLSGELLL-G-KEN 216 (823)
Q Consensus 159 ~~~~l~~~~--~-~i~v~~~-~~y~lidl~~~~-~-~~L~~~------------~~~~~p~--i~~~~~~EfLL-~-~~~ 216 (823)
.+.+++|.. + .++.|.. ....++|+.++. . ..+-.. .....++ +...+++.+++ + .|+
T Consensus 188 ~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 267 (408)
T 4a11_B 188 EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN 267 (408)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCC
Confidence 889999983 3 3666666 567889998754 1 111100 0011122 33446777666 3 355
Q ss_pred eEEEEcCC-CccccC---CceeecCCCcEEEE----eCCEEEEEeCCeEEEEEccCCCceeEEEee
Q 003405 217 IGVFVDQN-GKLLQA---DRICWSEAPIAVII----QKPYAIALLPRRVEVRSLRVPYALIQTIVL 274 (823)
Q Consensus 217 ~gvfv~~~-G~~~~~---~~i~w~~~P~~v~~----~~PYll~~~~~~ieV~~l~~~~~lvQ~i~l 274 (823)
...+.+.. |+.... ....-...+..+.. ...++++-..+.|.|+++. ++..++++.-
T Consensus 268 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~-~~~~~~~~~~ 332 (408)
T 4a11_B 268 RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVY-SGEQITMLKG 332 (408)
T ss_dssp CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETT-TCCEEEEECC
T ss_pred eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECc-CCcceeeecc
Confidence 66666653 332210 00000111111111 2345566667899999997 5777777753
No 35
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=98.12 E-value=0.00036 Score=76.77 Aligned_cols=188 Identities=11% Similarity=0.116 Sum_probs=124.9
Q ss_pred CCCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe
Q 003405 15 CSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 15 ~~~~I~ci~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
-...|.|++..++.++.|+.+|.|.+|++.... .....+.+ +..+|..+...|..+.+++.+
T Consensus 175 ~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------------~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 175 HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-----------------HQIGTLQG-HSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-----------------CEEEEEEC-CSSCEEEEEECTTSSEEEEEE
T ss_pred CCCceEEEEECCCEEEEEcCCCCEEEEecccCc-----------------ceeeEEcC-CCCCeeEEEEcCCCCEEEEEe
Confidence 345799999989999999999999999976321 11223333 367899999999888888877
Q ss_pred C-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCce-EEEEE---cCeEEEEEEcCCCceeEeeeecCCCCceEEEec-
Q 003405 95 E-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGF-LCFAR---QKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC- 166 (823)
Q Consensus 95 d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~-l~V~~---kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~- 166 (823)
. + |.+|++.+.+....+. ....++.++++++... ++++. .+.|.+|....+. ..+.+..+..+.+++|.
T Consensus 237 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~---~~~~~~~~~~v~~~~~s~ 313 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA---RVNTVDAGSQVTSLIWSP 313 (401)
T ss_dssp TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC---EEEEEECSSCEEEEEECS
T ss_pred CCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC---EEEEEeCCCcEEEEEECC
Confidence 5 5 9999998766554432 3456788888886554 44443 6788888876442 34455567889999997
Q ss_pred -CCeEEEEE---cCceEEEEcCCCCeeeccCC--CCCCCCEEEEccCCeEEEE--eCCeEEEEcC
Q 003405 167 -GENICIAI---RKGYMILNATNGALSEVFPS--GRIGPPLVVSLLSGELLLG--KENIGVFVDQ 223 (823)
Q Consensus 167 -~~~i~v~~---~~~y~lidl~~~~~~~L~~~--~~~~~p~i~~~~~~EfLL~--~~~~gvfv~~ 223 (823)
+..++++. .....++|+.++........ ....-..+...+++.+|++ .|+...+.+.
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 45677754 46678899888755444321 1111223445566666663 2444555554
No 36
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=98.09 E-value=0.0012 Score=72.46 Aligned_cols=231 Identities=17% Similarity=0.217 Sum_probs=140.4
Q ss_pred cEEEEEEeCCEEEE---EeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEec-ccCceeeE
Q 003405 18 KIDAVASYGLKILL---GCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLA-SRQLLLSL 93 (823)
Q Consensus 18 ~I~ci~~~~~~L~v---GT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~-~~~~Ll~l 93 (823)
...+++...+.+.+ |+.+|.|.+|++...... ......+.+ +..+|..+...| ..+++++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~--------------~~~~~~~~~-h~~~V~~~~~~p~~~~~l~s~ 100 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV--------------DKNVPLVCG-HTAPVLDIAWCPHNDNVIASG 100 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC--------------CTTCCCBCC-CSSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC--------------CCCCceEec-CCCCEEEEEeCCCCCCEEEEE
Confidence 34456666665544 789999999997543110 001112222 367999999999 77788877
Q ss_pred eC-c-EEEEeCCCC-------ccccccc-CCCCcEEEEeeCCC-ceEEEE-EcCeEEEEEEcCCCceeEeeee---cCCC
Q 003405 94 SE-S-IAFHRLPNL-------ETIAVLT-KAKGANVYSWDDRR-GFLCFA-RQKRVCIFRHDGGRGFVEVKDF---GVPD 158 (823)
Q Consensus 94 ~d-~-l~~~~L~~l-------~~~~~i~-~~kg~~~fa~~~~~-~~l~V~-~kkki~l~~~~~~~~f~~~kei---~~~~ 158 (823)
++ + |.+|++.+. ++...+. ....+++++++++. ..++.+ ..+.|.+|....++ ....+ ..++
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~ 177 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA---AVLTLGPDVHPD 177 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE---EEEEECTTTCCS
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC---ccEEEecCCCCC
Confidence 75 5 999999765 2333322 33568888888876 356666 45678888776442 23333 2457
Q ss_pred CceEEEec--CCeEEEEEc-CceEEEEcCCCCeeecc-CCCCCC-CCEEEEccCCeEEEEe-----CCeEEEEcCCCcc-
Q 003405 159 TVKSMSWC--GENICIAIR-KGYMILNATNGALSEVF-PSGRIG-PPLVVSLLSGELLLGK-----ENIGVFVDQNGKL- 227 (823)
Q Consensus 159 ~~~~l~~~--~~~i~v~~~-~~y~lidl~~~~~~~L~-~~~~~~-~p~i~~~~~~EfLL~~-----~~~gvfv~~~G~~- 227 (823)
.+.+++|. |+.++.|.. ....++|+.+++....+ ...... .-.+...+++.++.+. ++...+.|.....
T Consensus 178 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 178 TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE 257 (402)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred ceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC
Confidence 89999997 567888876 55788999998765544 222212 2235556778877743 3444556654321
Q ss_pred -ccCCceeecCCCcEEEEe--CCEEEEEe--CCeEEEEEccCCCc
Q 003405 228 -LQADRICWSEAPIAVIIQ--KPYAIALL--PRRVEVRSLRVPYA 267 (823)
Q Consensus 228 -~~~~~i~w~~~P~~v~~~--~PYll~~~--~~~ieV~~l~~~~~ 267 (823)
.....+.-...+..+++. ..++++.. ++.|.|+++.+ +.
T Consensus 258 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~-~~ 301 (402)
T 2aq5_A 258 PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS-EA 301 (402)
T ss_dssp CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS-ST
T ss_pred CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC-CC
Confidence 111112223345566665 34676554 46899999964 44
No 37
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.07 E-value=0.0014 Score=69.16 Aligned_cols=145 Identities=14% Similarity=0.196 Sum_probs=96.3
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCC--CeeEEEEecccCceeeEeC--c-EEEEe
Q 003405 27 LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKK--PILSMEVLASRQLLLSLSE--S-IAFHR 101 (823)
Q Consensus 27 ~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~--~I~qI~~~~~~~~Ll~l~d--~-l~~~~ 101 (823)
+.++.|..+|.|.+|+.... +..+.+. .... .+..+.+.|..+.+++.+. + |.+|+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~------------------~~~~~~~-~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 62 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM------------------AVDKVIT-IADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT------------------EEEEEEE-CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCC------------------cEEEEEE-cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEE
Confidence 46888999999999986531 2233332 1121 4788888888877666653 3 99999
Q ss_pred CCCCcccccccCCC------CcEEEEeeCCCceEEEEE-------------cCeEEEEEEcCCCceeEeeeecCCCCceE
Q 003405 102 LPNLETIAVLTKAK------GANVYSWDDRRGFLCFAR-------------QKRVCIFRHDGGRGFVEVKDFGVPDTVKS 162 (823)
Q Consensus 102 L~~l~~~~~i~~~k------g~~~fa~~~~~~~l~V~~-------------kkki~l~~~~~~~~f~~~kei~~~~~~~~ 162 (823)
+.+.+....+.... ++..++++++...++++. .+.|.+|....+ ...+.+..+..|.+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~ 139 (337)
T 1pby_B 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL---SRRKAFEAPRQITM 139 (337)
T ss_dssp TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT---EEEEEEECCSSCCC
T ss_pred CCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC---cEEEEEeCCCCcce
Confidence 87766544333222 456677888776787774 467777776532 33445556778889
Q ss_pred EEec--CCeEEEEEcCceEEEEcCCCCeeeccCC
Q 003405 163 MSWC--GENICIAIRKGYMILNATNGALSEVFPS 194 (823)
Q Consensus 163 l~~~--~~~i~v~~~~~y~lidl~~~~~~~L~~~ 194 (823)
++|. |+.++++ .....++|+.+++....++.
T Consensus 140 ~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~ 172 (337)
T 1pby_B 140 LAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPI 172 (337)
T ss_dssp EEECTTSSCEEEE-SSSEEEEETTTTEEEEEECS
T ss_pred eEECCCCCEEEEe-CCeEEEEECCCCcEeeeeec
Confidence 9997 4557777 67789999998876544443
No 38
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=98.05 E-value=0.011 Score=61.26 Aligned_cols=235 Identities=15% Similarity=0.130 Sum_probs=137.6
Q ss_pred ccCCCCcEEEEEE-eCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCce
Q 003405 12 ISNCSPKIDAVAS-YGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLL 90 (823)
Q Consensus 12 ~~~~~~~I~ci~~-~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~L 90 (823)
+..-...|+|++. .++.|+.|+.||.|.+|++... .....+.. +..+|..+...|..+.+
T Consensus 14 l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~------------------~~~~~~~~-~~~~v~~~~~~~~~~~l 74 (313)
T 3odt_A 14 LKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ------------------WLGTVVYT-GQGFLNSVCYDSEKELL 74 (313)
T ss_dssp ECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSS------------------EEEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred hhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCC------------------EEEEEeec-CCccEEEEEECCCCCEE
Confidence 3444568999875 4579999999999999997532 11222222 36799999999998888
Q ss_pred eeEeC-c-EEEEeCCCCc---cccccc-CCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeec-CCCCceE
Q 003405 91 LSLSE-S-IAFHRLPNLE---TIAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFG-VPDTVKS 162 (823)
Q Consensus 91 l~l~d-~-l~~~~L~~l~---~~~~i~-~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~-~~~~~~~ 162 (823)
++.+. + +.+|++.+.. ....+. ....+..++.+ ...++++ ..+.|.+|. .+. ....+. -...+.+
T Consensus 75 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~~~d--~~~---~~~~~~~~~~~v~~ 147 (313)
T 3odt_A 75 LFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGVVISGSWDKTAKVWK--EGS---LVYNLQAHNASVWD 147 (313)
T ss_dssp EEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE--TTE---EEEEEECCSSCEEE
T ss_pred EEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--CCEEEEEeCCCCEEEEc--CCc---EEEecccCCCceeE
Confidence 88775 4 9999986543 222222 23456667664 3456666 455676766 221 122222 3467888
Q ss_pred EEec---CCeEEEEEc-CceEEEEcCCCCeeeccCC-CCCCCCEEEEccCCeEEEEe-CCeEEEEcCC-CccccCCceee
Q 003405 163 MSWC---GENICIAIR-KGYMILNATNGALSEVFPS-GRIGPPLVVSLLSGELLLGK-ENIGVFVDQN-GKLLQADRICW 235 (823)
Q Consensus 163 l~~~---~~~i~v~~~-~~y~lidl~~~~~~~L~~~-~~~~~p~i~~~~~~EfLL~~-~~~gvfv~~~-G~~~~~~~i~w 235 (823)
+.|. ++.++.|.. ....++|. ++....+.. .......+...+++.++.+. ++...+.|.. |+.. ..+.-
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~--~~~~~ 223 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVL--RTYEG 223 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEE--EEEEC
T ss_pred EEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhh--hhhhc
Confidence 8885 567777776 45678883 332222222 11111234444666755554 4455556643 4432 22222
Q ss_pred cC-CCcEEEEeCC-EEEEEe-CCeEEEEEccCCCceeEEEeeCCc
Q 003405 236 SE-APIAVIIQKP-YAIALL-PRRVEVRSLRVPYALIQTIVLQNV 277 (823)
Q Consensus 236 ~~-~P~~v~~~~P-Yll~~~-~~~ieV~~l~~~~~lvQ~i~l~~~ 277 (823)
.. ....+.+... ++++.. ++.|.|+++. ++..++++.....
T Consensus 224 ~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~ 267 (313)
T 3odt_A 224 HESFVYCIKLLPNGDIVSCGEDRTVRIWSKE-NGSLKQVITLPAI 267 (313)
T ss_dssp CSSCEEEEEECTTSCEEEEETTSEEEEECTT-TCCEEEEEECSSS
T ss_pred CCceEEEEEEecCCCEEEEecCCEEEEEECC-CCceeEEEeccCc
Confidence 22 2344555432 455554 4689999997 5788888876553
No 39
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=98.03 E-value=0.00092 Score=73.93 Aligned_cols=223 Identities=13% Similarity=0.157 Sum_probs=133.8
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
...|.|++.. ++.|+.|+.||.|.+|++... +..+.+.+ +..+|..+...|..+.+++.
T Consensus 150 ~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~------------------~~~~~~~~-h~~~V~~v~~~p~~~~l~s~ 210 (410)
T 1vyh_C 150 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGF------------------ECIRTMHG-HDHNVSSVSIMPNGDHIVSA 210 (410)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCCCEEETTSS------------------CEEECCCC-CSSCEEEEEECSSSSEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------------------ceeEEEcC-CCCCEEEEEEeCCCCEEEEE
Confidence 3578888765 468999999999999987532 22334443 35789999999998888887
Q ss_pred eC-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeecCCCCceEEEec---
Q 003405 94 SE-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--- 166 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~--- 166 (823)
+. + |++|++.+-..+..+. ....+..++.+++...++.+ ..+.|.+|....+.....++ .-...+.+++|.
T Consensus 211 s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~ 288 (410)
T 1vyh_C 211 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR--EHRHVVECISWAPES 288 (410)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECCSC
T ss_pred eCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec--CCCceEEEEEEcCcc
Confidence 75 4 9999997655443332 23457777777776667666 45678888776432111111 224567888885
Q ss_pred -------------------CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-Ee-CCeEEEEcCC
Q 003405 167 -------------------GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-GK-ENIGVFVDQN 224 (823)
Q Consensus 167 -------------------~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~~-~~~gvfv~~~ 224 (823)
|..++.|.. +...++|+.++.....+......-..+...+++.+|+ +. |....+.|..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 289 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp GGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred cccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 335777776 4578999998865433322111111234446677776 33 4445555653
Q ss_pred C-ccccCCceee-cCCCcEEEEe--CCEEEEEeC-CeEEEEE
Q 003405 225 G-KLLQADRICW-SEAPIAVIIQ--KPYAIALLP-RRVEVRS 261 (823)
Q Consensus 225 G-~~~~~~~i~w-~~~P~~v~~~--~PYll~~~~-~~ieV~~ 261 (823)
. +.. ..+.- ......+++. .++|++... +.|.|++
T Consensus 369 ~~~~~--~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 369 NKRCM--KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp TSCCC--EEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCceE--EEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 2 221 22221 1223344443 346666554 4555554
No 40
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=98.01 E-value=0.00056 Score=73.44 Aligned_cols=175 Identities=10% Similarity=0.113 Sum_probs=113.9
Q ss_pred CCcEEEEEEe-CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe
Q 003405 16 SPKIDAVASY-GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 16 ~~~I~ci~~~-~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
...|+|+... ++.++.|+.||.|.+|++... .....+.+ +..+|..+...|..+++++-+
T Consensus 143 ~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~------------------~~~~~~~~-h~~~v~~~~~~~~~~~l~sg~ 203 (340)
T 1got_B 143 TGYLSCCRFLDDNQIVTSSGDTTCALWDIETG------------------QQTTTFTG-HTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp SSCEEEEEEEETTEEEEEETTSCEEEEETTTT------------------EEEEEECC-CSSCEEEEEECTTSSEEEEEE
T ss_pred CccEEEEEECCCCcEEEEECCCcEEEEECCCC------------------cEEEEEcC-CCCceEEEEECCCCCEEEEEe
Confidence 3467776654 578999999999999997532 12334443 367899999999888888777
Q ss_pred C-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEeeeecC---CCCceEEEec-
Q 003405 95 E-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFGV---PDTVKSMSWC- 166 (823)
Q Consensus 95 d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kei~~---~~~~~~l~~~- 166 (823)
. + |++|++.+......+. ....++.++++++...++.+. .+.|.+|....+. .+..+.. ...+.+++|.
T Consensus 204 ~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~ 280 (340)
T 1got_B 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEEEECCTTCCSCEEEEEECT
T ss_pred CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc---EEEEEccCCcccceEEEEECC
Confidence 4 5 9999997765444433 234688899998877777774 5678888876432 2222222 2468899997
Q ss_pred -CCeEEEEEcC-ceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE
Q 003405 167 -GENICIAIRK-GYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL 212 (823)
Q Consensus 167 -~~~i~v~~~~-~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL 212 (823)
|..++.|... ...+.|+.+++....+......--++...+++.+|+
T Consensus 281 ~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~ 328 (340)
T 1got_B 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328 (340)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEE
Confidence 5578888774 578889888765444332111111233345555554
No 41
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.01 E-value=2.4e-07 Score=100.91 Aligned_cols=230 Identities=16% Similarity=0.179 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHhcCChhhHHhhhcCCCcccHHHHHHHHHhcCcHHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCcccc
Q 003405 506 ILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEH 585 (823)
Q Consensus 506 ~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~~~~~~~L~~~~~~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~ 585 (823)
.|||.|+-||.++++-..+.+|++.+|..+++.+-+.|-+.|.|++.-.||..-.+|.+--..+..|.+=.
T Consensus 117 ~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq--------- 187 (624)
T 3lvg_A 117 YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQ--------- 187 (624)
T ss_dssp TTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGG---------
T ss_pred ccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHH---------
Confidence 59999999999999888899999999999999999999999999999889988888765444443332111
Q ss_pred cccCChHHHHHHhhcCCCCChhhHHHh-hhhh-----hhcCcccccccccc-CCCChHHHHHHHhhc-CchhHHHHHHHH
Q 003405 586 TQKFNPESIIEYLKPLCGTDPMLVLEF-SMLV-----LESCPTQTIELFLS-GNIPADLVNSYLKQY-SPSMQGRYLELM 657 (823)
Q Consensus 586 ~~~~~~~~~i~yL~~L~~~~~~li~~y-~~wl-----l~~~p~~~~~if~~-~~l~~~~Vl~~L~~~-~~~~~~~YLE~l 657 (823)
.+++-=+|-. ... +|+- .--- ++...-.|+.|.+. |.++- ++.+=+.. .-+.++.-||.=
T Consensus 188 -------~AVdaArKAn--s~k-tWKeV~~ACvd~~EfrLAqicGLniIvhadeL~e--lv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 188 -------AAVDGARKAN--STR-TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEE--LINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp -------SSTTTTTTCC--SSC-SHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSG--GGSSSSTTCCCTTSTTTHHHH
T ss_pred -------HHHHHHHhcC--Chh-HHHHHHHHHhCchHHHHHHHhcchhcccHHHHHH--HHHHHHhCCCHHHHHHHHHHH
Confidence 1111001000 000 0100 0000 11122245555544 22211 11111111 134566677775
Q ss_pred hhcccCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccchHHHHHHHHHhhh-cCCCChHHHhccCCCCchhhHHHH
Q 003405 658 LAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALES-ISGYNPEVLLKRLPADALYEERAI 736 (823)
Q Consensus 658 i~~~~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kLl~fL~~-s~~Yd~~~~L~~~~~~~l~~e~~~ 736 (823)
+.. ....-.+-|+|+.+|..+ .+.||+.+|+. .+..+..++++.|...-++.|.++
T Consensus 256 lgl--ErAHmGmFTELaILYsKY---------------------~PeKlmEHlklf~sriNipKviracE~ahLW~Elvf 312 (624)
T 3lvg_A 256 LGL--ERAHMGMFTELAILYSKF---------------------KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 312 (624)
T ss_dssp TTS--TTCCHHHHHHHHHHHHSS---------------------CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHH
T ss_pred hCC--CchhHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHH
Confidence 532 235678999999999988 36899999998 779999999999999999999999
Q ss_pred HhhccccHHHHHHHHHHH---------hCCC-----chhHHHHHHHHhcCCCCCcch
Q 003405 737 LLGKMNQHELALSLYVHK---------VFLI-----NQPVFLLIRRMAMDIKPLVTE 779 (823)
Q Consensus 737 Ll~klg~h~~AL~ilv~~---------L~D~-----~~a~~~~l~~~y~~~~~~~~~ 779 (823)
||.+-.+++.|....+.. -+|+ +..|||-.+..|++.+|..-.
T Consensus 313 LY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~ 369 (624)
T 3lvg_A 313 LYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLN 369 (624)
T ss_dssp HHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSH
T ss_pred HHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHH
Confidence 999999999988887732 2333 567999999999999887663
No 42
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.99 E-value=0.0035 Score=68.05 Aligned_cols=246 Identities=11% Similarity=0.119 Sum_probs=153.1
Q ss_pred EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe--Cc-EEEEeCCC
Q 003405 28 KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS--ES-IAFHRLPN 104 (823)
Q Consensus 28 ~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~--d~-l~~~~L~~ 104 (823)
.++.|+.+|.|.+|++... ++.+.+.. ...+..+...|..+.+++.+ |+ |.+|++.+
T Consensus 4 l~vs~~~d~~v~v~d~~~~------------------~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~ 63 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSN------------------KVTATIPV--GSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63 (391)
T ss_dssp EEEEETTTTEEEEEETTTT------------------EEEEEEEC--SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT
T ss_pred EEEEcCCCCEEEEEECCCC------------------eEEEEeec--CCCcceEEECCCCCEEEEECCCCCeEEEEECCC
Confidence 3566788999999986532 22333332 24688999999888776554 34 99999987
Q ss_pred CcccccccCCCCcEEEEeeCCCceEEEEE--cCeEEEEEEcCCCceeEeeeecCCCCceEEEec--CCeEEEEEc--Cce
Q 003405 105 LETIAVLTKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GENICIAIR--KGY 178 (823)
Q Consensus 105 l~~~~~i~~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~--~~~i~v~~~--~~y 178 (823)
.+....+.....++.++++++...++++. .+.|.+|....+ ...+.+.....+.+++|. |+.++++.. ...
T Consensus 64 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v 140 (391)
T 1l0q_A 64 NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN---TVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTV 140 (391)
T ss_dssp TEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEECSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred CeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCC---eEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEE
Confidence 76655555555788899998877787765 367777776633 233445556788999997 446755554 568
Q ss_pred EEEEcCCCCeeeccCCCCCCCCE-EEEccCCeEE-EE-e-CCeEEEEcCCCccccCCceeecCCCcEEEEe--CCEEEEE
Q 003405 179 MILNATNGALSEVFPSGRIGPPL-VVSLLSGELL-LG-K-ENIGVFVDQNGKLLQADRICWSEAPIAVIIQ--KPYAIAL 252 (823)
Q Consensus 179 ~lidl~~~~~~~L~~~~~~~~p~-i~~~~~~EfL-L~-~-~~~gvfv~~~G~~~~~~~i~w~~~P~~v~~~--~PYll~~ 252 (823)
.++|+.+++....+..+. .|. +...+++..+ ++ . ++...++|...... ...+.-...|..+++. ..++++.
T Consensus 141 ~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~g~~l~~~ 217 (391)
T 1l0q_A 141 SVINTVTKAVINTVSVGR--SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-IDTVKVEAAPSGIAVNPEGTKAYVT 217 (391)
T ss_dssp EEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEECSSEEEEEEECTTSSEEEEE
T ss_pred EEEECCCCcEEEEEecCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE-EEEEecCCCccceEECCCCCEEEEE
Confidence 889999988766666543 233 3344566655 43 2 34555666543221 2233334456666665 3466666
Q ss_pred e----CCeEEEEEccCCCceeEEEeeCCc-ccc--cccCCeEEEec--cceEEEeec
Q 003405 253 L----PRRVEVRSLRVPYALIQTIVLQNV-RHL--IPSSNAVVVAL--ENSIFGLFP 300 (823)
Q Consensus 253 ~----~~~ieV~~l~~~~~lvQ~i~l~~~-~~l--~~~~~~v~v~s--~~~I~~l~~ 300 (823)
. .+.|.++++. ++..++++..... ..+ .+.++.++++. ++.|.....
T Consensus 218 ~~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 218 NVDKYFNTVSMIDTG-TNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp EECSSCCEEEEEETT-TTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred ecCcCCCcEEEEECC-CCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence 5 4689999986 4777777765432 112 23344565553 455555443
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.99 E-value=0.0038 Score=65.52 Aligned_cols=187 Identities=13% Similarity=0.175 Sum_probs=121.3
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
...|+|++.. ++.|+.|+.||.|.+|++.... ....+.+ +..+|..+...|..+.+++.
T Consensus 65 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~------------------~~~~~~~-~~~~v~~~~~~~~~~~l~s~ 125 (312)
T 4ery_A 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK------------------CLKTLKG-HSNYVFCCNFNPQSNLIVSG 125 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC------------------EEEEEEC-CSSCEEEEEECSSSSEEEEE
T ss_pred CCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc------------------EEEEEcC-CCCCEEEEEEcCCCCEEEEE
Confidence 4578888765 4689999999999999976421 2233333 35789999999998888888
Q ss_pred eC-c-EEEEeCCCCcccccccC-CCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEeeeec--CCCCceEEEec-
Q 003405 94 SE-S-IAFHRLPNLETIAVLTK-AKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFG--VPDTVKSMSWC- 166 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~~~~~i~~-~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kei~--~~~~~~~l~~~- 166 (823)
+. + |++|++.+.+....+.. ...++.++++++...++++. .+.|.+|....++. ++.+. -..++.+++|.
T Consensus 126 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~ 202 (312)
T 4ery_A 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSP 202 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---EEEECCSSCCCEEEEEECT
T ss_pred eCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eeEEeccCCCceEEEEECC
Confidence 75 4 99999987665544432 34678888888776777764 56788887764422 22221 23467788887
Q ss_pred -CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCC---CEEEEccCCeEEEE--eCCeEEEEcCC
Q 003405 167 -GENICIAIR-KGYMILNATNGALSEVFPSGRIGP---PLVVSLLSGELLLG--KENIGVFVDQN 224 (823)
Q Consensus 167 -~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~---p~i~~~~~~EfLL~--~~~~gvfv~~~ 224 (823)
++.++.|.. ....++|+.+++....+....... ......+++.++++ .|+...+.|..
T Consensus 203 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 203 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp TSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 456777776 557889999887554443222111 11223356677663 34455555643
No 44
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.97 E-value=0.00093 Score=72.44 Aligned_cols=230 Identities=9% Similarity=0.063 Sum_probs=129.4
Q ss_pred CcEEEEEEeC-CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC
Q 003405 17 PKIDAVASYG-LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE 95 (823)
Q Consensus 17 ~~I~ci~~~~-~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d 95 (823)
..|+|++... +.+++|+.+|.|.+|++...... ........+ +..+|..|...|..+.|++.+.
T Consensus 95 ~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~--------------~~~~~~~~~-h~~~V~~v~~spdg~~l~sgs~ 159 (357)
T 4g56_B 95 AGVTDVAWVSEKGILVASDSGAVELWEILEKESL--------------LVNKFAKYE-HDDIVKTLSVFSDGTQAVSGGK 159 (357)
T ss_dssp SCEEEEEEETTTEEEEEETTSCEEEC----------------------CCCCEEECC-CSSCEEEEEECSSSSEEEEEET
T ss_pred CCEEEEEEcCCCCEEEEECCCEEEEeecccccee--------------EEEeeccCC-CCCCEEEEEECCCCCEEEEEeC
Confidence 3588888664 68999999999999997643211 000011112 3678999999999888888775
Q ss_pred -c-EEEEeCCCCcccccccC-CCCcEEEEeeCCCc-eEEEE-EcCeEEEEEEcCCCceeEeeeecCCCCceEEEec---C
Q 003405 96 -S-IAFHRLPNLETIAVLTK-AKGANVYSWDDRRG-FLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC---G 167 (823)
Q Consensus 96 -~-l~~~~L~~l~~~~~i~~-~kg~~~fa~~~~~~-~l~V~-~kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~---~ 167 (823)
+ |++|++.+-+.+..+.. ...++++++.++.. .++.+ ..+.|.+|....++.........-...+.+++|. +
T Consensus 160 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 239 (357)
T 4g56_B 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD 239 (357)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST
T ss_pred CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc
Confidence 4 99999987665544432 34677888876653 45554 4567877766533221111112224578899997 2
Q ss_pred CeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCC-eEEE-Ee-CCeEEEEcCCC-ccccCCceeecCCCcEE
Q 003405 168 ENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSG-ELLL-GK-ENIGVFVDQNG-KLLQADRICWSEAPIAV 242 (823)
Q Consensus 168 ~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~-EfLL-~~-~~~gvfv~~~G-~~~~~~~i~w~~~P~~v 242 (823)
..++.|.. ....++|+.+++....+.......-.+...+++ .+|+ +. |....+.|.+. +.. ..+.=.+....+
T Consensus 240 ~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~--~~~~H~~~V~~v 317 (357)
T 4g56_B 240 DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF--RDLSHRDFVTGV 317 (357)
T ss_dssp TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE--EECCCSSCEEEE
T ss_pred ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe--EECCCCCCEEEE
Confidence 35666766 457899999876544443222111123333454 4555 33 44555566543 221 111112233445
Q ss_pred EEe---CCEEEEEe-CCeEEEEEcc
Q 003405 243 IIQ---KPYAIALL-PRRVEVRSLR 263 (823)
Q Consensus 243 ~~~---~PYll~~~-~~~ieV~~l~ 263 (823)
++. ..+|+... ++.|.|+++.
T Consensus 318 afsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 318 AWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEeCCCCCEEEEEcCCCeEEEEECC
Confidence 553 12454444 3567788774
No 45
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.0014 Score=71.73 Aligned_cols=228 Identities=14% Similarity=0.181 Sum_probs=134.4
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecc-cCceee
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS-RQLLLS 92 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~-~~~Ll~ 92 (823)
+..|.|++.. ++.|+.|+.+|.|.+|++...... ......+.. +..+|..+...|. .+++++
T Consensus 67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~--------------~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s 131 (416)
T 2pm9_A 67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA--------------INSMARFSN-HSSSVKTVKFNAKQDNVLAS 131 (416)
T ss_dssp SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC--------------CCEEEECCC-SSSCCCEEEECSSSTTBEEE
T ss_pred CCceEEEEECCCCCeEEEEccCCeEEEeeccccccc--------------ccchhhccC-CccceEEEEEcCCCCCEEEE
Confidence 4579998875 468999999999999997753211 112333333 3679999999997 667777
Q ss_pred EeC-c-EEEEeCCCCc------ccccc----cCCCCcEEEEeeCC-CceEEEE-EcCeEEEEEEcCCCceeEeeeecC--
Q 003405 93 LSE-S-IAFHRLPNLE------TIAVL----TKAKGANVYSWDDR-RGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGV-- 156 (823)
Q Consensus 93 l~d-~-l~~~~L~~l~------~~~~i----~~~kg~~~fa~~~~-~~~l~V~-~kkki~l~~~~~~~~f~~~kei~~-- 156 (823)
.+. + |.+|++.+.+ ....+ .....++.++++++ ...++++ ..+.|.+|....++ ....+..
T Consensus 132 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~ 208 (416)
T 2pm9_A 132 GGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK---EVIHLSYTS 208 (416)
T ss_dssp ECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE---EEEEECCCC
T ss_pred EcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC---cceEEeccc
Confidence 664 4 9999997654 22111 22346788888887 3456665 55678888877432 2233333
Q ss_pred -----CCCceEEEecC---CeEEEEEcC----ceEEEEcCCC-CeeeccCCCCCCCC-EEEEcc-CCeEEE-E-eCCeEE
Q 003405 157 -----PDTVKSMSWCG---ENICIAIRK----GYMILNATNG-ALSEVFPSGRIGPP-LVVSLL-SGELLL-G-KENIGV 219 (823)
Q Consensus 157 -----~~~~~~l~~~~---~~i~v~~~~----~y~lidl~~~-~~~~L~~~~~~~~p-~i~~~~-~~EfLL-~-~~~~gv 219 (823)
...+.+++|.. ..++.+... ...++|+.++ .....+..+..... .+...+ ++.+++ + .|+...
T Consensus 209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~ 288 (416)
T 2pm9_A 209 PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVL 288 (416)
T ss_dssp CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEE
T ss_pred cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEE
Confidence 46799999983 357777765 6889999886 33333331111111 233334 566665 3 345555
Q ss_pred EEcCC-CccccCCceee-cCCCcEEEEeC--C-EEEEEe-CCeEEEEEcc
Q 003405 220 FVDQN-GKLLQADRICW-SEAPIAVIIQK--P-YAIALL-PRRVEVRSLR 263 (823)
Q Consensus 220 fv~~~-G~~~~~~~i~w-~~~P~~v~~~~--P-Yll~~~-~~~ieV~~l~ 263 (823)
+.|.. |+.. ..+.- ......+.+.. | ++++.. ++.|.|+++.
T Consensus 289 ~wd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 289 LWNPESAEQL--SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp EECSSSCCEE--EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred EeeCCCCccc--eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 66643 3322 12221 22334455543 2 333333 2567788875
No 46
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=97.97 E-value=0.0061 Score=64.28 Aligned_cols=241 Identities=14% Similarity=0.081 Sum_probs=137.4
Q ss_pred CCcEEEEEEe---CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceee
Q 003405 16 SPKIDAVASY---GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (823)
Q Consensus 16 ~~~I~ci~~~---~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~ 92 (823)
...|+|++.. ++.|+-|..||.|.+|++...... .....+.+++ +..+|..+...|+.+.+++
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~-------------~~~~~~~l~~-h~~~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN-------------YGIPQRALRG-HSHFVSDVVISSDGQFALS 103 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC-------------SEEEEEEECC-CSSCEEEEEECTTSSEEEE
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc-------------cceeeEEEeC-CCCCEEEEEECCCCCEEEE
Confidence 4579999976 357888999999999998754321 1112233443 3679999999999888888
Q ss_pred EeC-c-EEEEeCCCCcccccc-cCCCCcEEEEeeCCCceEEEEEc-CeEEEEEEcCCCceeEeeeecCCCCceEEEecC-
Q 003405 93 LSE-S-IAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFARQ-KRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCG- 167 (823)
Q Consensus 93 l~d-~-l~~~~L~~l~~~~~i-~~~kg~~~fa~~~~~~~l~V~~k-kki~l~~~~~~~~f~~~kei~~~~~~~~l~~~~- 167 (823)
.+. + +.+|+.......... .....+...+.......++.+.. +.+.++...... ........-.+.+..++|..
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC-KYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EEEECSSSCSSCEEEEEECSC
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc-eEEEEeccccCcccceEEccC
Confidence 775 5 899998765433322 22234445555555556666644 556665544221 11111122245777787762
Q ss_pred --CeEE-EEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-E-eCCeEEEEcCCCccccCCceeecCCCcE
Q 003405 168 --ENIC-IAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-G-KENIGVFVDQNGKLLQADRICWSEAPIA 241 (823)
Q Consensus 168 --~~i~-v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~-~~~~gvfv~~~G~~~~~~~i~w~~~P~~ 241 (823)
+.++ .+.. ....+.|+.+++....+......--.+...+++.+|+ + .|+...+.|...... ...+.-......
T Consensus 183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~~~~v~~ 261 (340)
T 4aow_A 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH-LYTLDGGDIINA 261 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE-EEEEECSSCEEE
T ss_pred CCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce-eeeecCCceEEe
Confidence 2333 3333 4577889998876544432221111234446777776 3 345555666533211 122222233333
Q ss_pred EEEe--CCEEEEEeCCeEEEEEccCCCceeEEEe
Q 003405 242 VIIQ--KPYAIALLPRRVEVRSLRVPYALIQTIV 273 (823)
Q Consensus 242 v~~~--~PYll~~~~~~ieV~~l~~~~~lvQ~i~ 273 (823)
+.+. ..++.+-..+.|.|+++. .+..++++.
T Consensus 262 ~~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~ 294 (340)
T 4aow_A 262 LCFSPNRYWLCAATGPSIKIWDLE-GKIIVDELK 294 (340)
T ss_dssp EEECSSSSEEEEEETTEEEEEETT-TTEEEEEEC
T ss_pred eecCCCCceeeccCCCEEEEEECC-CCeEEEecc
Confidence 4433 234555556889999986 466666654
No 47
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.96 E-value=0.013 Score=63.47 Aligned_cols=236 Identities=13% Similarity=0.096 Sum_probs=139.5
Q ss_pred cCCCCcEEEEEEeC---CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecC-CCCCCeeEEEEec-cc
Q 003405 13 SNCSPKIDAVASYG---LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISG-FSKKPILSMEVLA-SR 87 (823)
Q Consensus 13 ~~~~~~I~ci~~~~---~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~-~~k~~I~qI~~~~-~~ 87 (823)
..-...|+|++... +.|+.|+.||.|.+|++..... ...+.. -+..+|..+...| ..
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------------------~~~~~~~~h~~~v~~~~~~~~~~ 131 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK------------------TSFIQGMGPGDAITGMKFNQFNT 131 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC------------------EEEECCCSTTCBEEEEEEETTEE
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc------------------ceeeecCCcCCceeEEEeCCCCC
Confidence 34456899988774 5799999999999999774321 111221 1367999999999 56
Q ss_pred CceeeEeC-c-EEEEeCCCCcccccccC----CCCcEEEEeeCCCceEEEEEc-CeEEEEEEcCCCceeEeeeecCCCCc
Q 003405 88 QLLLSLSE-S-IAFHRLPNLETIAVLTK----AKGANVYSWDDRRGFLCFARQ-KRVCIFRHDGGRGFVEVKDFGVPDTV 160 (823)
Q Consensus 88 ~~Ll~l~d-~-l~~~~L~~l~~~~~i~~----~kg~~~fa~~~~~~~l~V~~k-kki~l~~~~~~~~f~~~kei~~~~~~ 160 (823)
+.+++.+. + |.+|++.+-. ...+.. ...+.+++++++...++++.. +.|.+|... ++....++ .-.+.+
T Consensus 132 ~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~--~h~~~v 207 (383)
T 3ei3_B 132 NQLFVSSIRGATTLRDFSGSV-IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEK--LHKAKV 207 (383)
T ss_dssp EEEEEEETTTEEEEEETTSCE-EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEE--CSSSCE
T ss_pred CEEEEEeCCCEEEEEECCCCc-eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEec--cCCCcE
Confidence 77777765 5 9999997522 222211 134788888888777777744 667777764 32222221 234689
Q ss_pred eEEEecC--C-eEEEEEc-CceEEEEcCC----CCeeeccCCCCCCCCEEEEcc-CCeEEE-E-eCCeEEEEcCC-Cccc
Q 003405 161 KSMSWCG--E-NICIAIR-KGYMILNATN----GALSEVFPSGRIGPPLVVSLL-SGELLL-G-KENIGVFVDQN-GKLL 228 (823)
Q Consensus 161 ~~l~~~~--~-~i~v~~~-~~y~lidl~~----~~~~~L~~~~~~~~p~i~~~~-~~EfLL-~-~~~~gvfv~~~-G~~~ 228 (823)
.+++|.. . .++.|.. ....++|+.+ +.....+.... ..-.+...+ ++.+++ + .|+...+.|.. |...
T Consensus 208 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~ 286 (383)
T 3ei3_B 208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEK-PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP 286 (383)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSS-CEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC
T ss_pred EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCC-ceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 9999984 3 5666666 4578899987 33333333211 111233446 677766 3 34555566643 3221
Q ss_pred cCCceeec-------CCCcEEEEe--CCEEEEE----------eCCeEEEEEccCCCceeEEEee
Q 003405 229 QADRICWS-------EAPIAVIIQ--KPYAIAL----------LPRRVEVRSLRVPYALIQTIVL 274 (823)
Q Consensus 229 ~~~~i~w~-------~~P~~v~~~--~PYll~~----------~~~~ieV~~l~~~~~lvQ~i~l 274 (823)
..+.-. ..+....+. .+++.+. .++.|.|+++. ++..++++..
T Consensus 287 --~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~-~~~~~~~l~~ 348 (383)
T 3ei3_B 287 --DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDAN-SGGLVHQLRD 348 (383)
T ss_dssp --SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETT-TCCEEEEECB
T ss_pred --cccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecC-CCceeeeecC
Confidence 111100 112222222 2333322 24679999996 5888888864
No 48
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.0024 Score=68.17 Aligned_cols=175 Identities=11% Similarity=0.173 Sum_probs=114.5
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
...|+|++.. ++.|+.|+.||.|.+|++.... ....+. ...+|..+...|..+.+++.
T Consensus 74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------------~~~~~~--~~~~v~~~~~~~~~~~l~~~ 133 (369)
T 3zwl_B 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ------------------CVATWK--SPVPVKRVEFSPCGNYFLAI 133 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC------------------EEEEEE--CSSCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------------------EEEEee--cCCCeEEEEEccCCCEEEEe
Confidence 4578888876 5689999999999999976421 222333 35789999999998888877
Q ss_pred eC------c-EEEEeCCCCccc-----------cccc---CCCCcEEEEeeCCCceEEEEEc-CeEEEEEEcCCCceeEe
Q 003405 94 SE------S-IAFHRLPNLETI-----------AVLT---KAKGANVYSWDDRRGFLCFARQ-KRVCIFRHDGGRGFVEV 151 (823)
Q Consensus 94 ~d------~-l~~~~L~~l~~~-----------~~i~---~~kg~~~fa~~~~~~~l~V~~k-kki~l~~~~~~~~f~~~ 151 (823)
++ + +.+|++...... ..+. ....+..++++++...++++.. +.|.+|....+ ....
T Consensus 134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~ 211 (369)
T 3zwl_B 134 LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN--YEYV 211 (369)
T ss_dssp ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT--TEEE
T ss_pred cCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC--cEeE
Confidence 63 4 899987543211 1111 1116777888877667777744 66778877642 2233
Q ss_pred eeec-CCCCceEEEec--CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEEE
Q 003405 152 KDFG-VPDTVKSMSWC--GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLG 213 (823)
Q Consensus 152 kei~-~~~~~~~l~~~--~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL~ 213 (823)
+.+. -...+.+++|. ++.++.|.. ....++|+.+++....+..+. ....+...+++.++++
T Consensus 212 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~ 276 (369)
T 3zwl_B 212 DSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDC-PLNTAVITPLKEFIIL 276 (369)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS-CEEEEEECSSSSEEEE
T ss_pred EEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCC-CceeEEecCCCceEEE
Confidence 3333 34688999997 556777776 567899999987766655322 1123344566666653
No 49
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.92 E-value=0.00071 Score=75.26 Aligned_cols=221 Identities=11% Similarity=0.151 Sum_probs=134.1
Q ss_pred CCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC
Q 003405 16 SPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE 95 (823)
Q Consensus 16 ~~~I~ci~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d 95 (823)
...|+|++..++.|+.|+.||.|.+|++.... ....+.+ +..+|..+...+ +.+++.+.
T Consensus 173 ~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~------------------~~~~~~~-h~~~v~~l~~~~--~~l~s~s~ 231 (435)
T 1p22_A 173 TGSVLCLQYDERVIITGSSDSTVRVWDVNTGE------------------MLNTLIH-HCEAVLHLRFNN--GMMVTCSK 231 (435)
T ss_dssp SSCEEEEECCSSEEEEEETTSCEEEEESSSCC------------------EEEEECC-CCSCEEEEECCT--TEEEEEET
T ss_pred CCcEEEEEECCCEEEEEcCCCeEEEEECCCCc------------------EEEEEcC-CCCcEEEEEEcC--CEEEEeeC
Confidence 45799999988999999999999999976421 2333333 356888887753 56666665
Q ss_pred -c-EEEEeCCCCccc---ccc-cCCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEeeeec-CCCCceEEEecC
Q 003405 96 -S-IAFHRLPNLETI---AVL-TKAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFG-VPDTVKSMSWCG 167 (823)
Q Consensus 96 -~-l~~~~L~~l~~~---~~i-~~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kei~-~~~~~~~l~~~~ 167 (823)
+ |.+|++.+.+.. ... .....+++++.+ ...++++. .+.|.+|....+. .++.+. -.+.+.++.|.+
T Consensus 232 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~ 306 (435)
T 1p22_A 232 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCE---FVRTLNGHKRGIACLQYRD 306 (435)
T ss_dssp TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEEET
T ss_pred CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCcCc---EEEEEcCCCCcEEEEEeCC
Confidence 4 999999765433 111 222356666663 34566664 5678888776442 233332 346788999999
Q ss_pred CeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-E-eCCeEEEEcCCCcc-cc-------CCceee-
Q 003405 168 ENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-G-KENIGVFVDQNGKL-LQ-------ADRICW- 235 (823)
Q Consensus 168 ~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~-~~~~gvfv~~~G~~-~~-------~~~i~w- 235 (823)
+.++.|.. +...++|+.+++....+.... .++....-++.+++ + .|+...+.|..... .. ...+.-
T Consensus 307 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h 384 (435)
T 1p22_A 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH 384 (435)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC
T ss_pred CEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC
Confidence 98888887 567899999987655444322 23322222556655 3 34555555532210 00 011111
Q ss_pred cCCCcEEEEeCCEEEEEeC-CeEEEEEccC
Q 003405 236 SEAPIAVIIQKPYAIALLP-RRVEVRSLRV 264 (823)
Q Consensus 236 ~~~P~~v~~~~PYll~~~~-~~ieV~~l~~ 264 (823)
.+....+.+...++++... +.|.|+++.+
T Consensus 385 ~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 385 SGRVFRLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp SSCCCCEEECSSCEEECCSSSEEEEEC---
T ss_pred CCCeEEEEeCCCEEEEEeCCCEEEEEECCC
Confidence 2334567777777776664 6788998864
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.92 E-value=0.005 Score=67.42 Aligned_cols=231 Identities=10% Similarity=0.056 Sum_probs=135.9
Q ss_pred EEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEec-ccCceeeEeC-c-E
Q 003405 21 AVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLA-SRQLLLSLSE-S-I 97 (823)
Q Consensus 21 ci~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~-~~~~Ll~l~d-~-l 97 (823)
++...++.|+.|+.+|.+.+|+...... .+. +....+..+.... ..+++++.+. + |
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~------------------~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i 121 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRDG------------------SKM---LKRADYTAVDTAKLQMRRFILGTTEGDI 121 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEET------------------TTT---SCSCCEEEEEEECSSSCEEEEEETTSCE
T ss_pred eeeecCCeEEEEEcCCcEEEEEecccce------------------eeE---EecCCceEEEEEecCCCEEEEEECCCCE
Confidence 4566678999999999999998653211 001 1123555554444 4456666554 4 9
Q ss_pred EEEeCCCCcccccc-cCCCCcEEEEeeCCCceEEEEEc-CeEEEEEEcCCCceeEeeeecCCCCceEEEec--CCeEEEE
Q 003405 98 AFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFARQ-KRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GENICIA 173 (823)
Q Consensus 98 ~~~~L~~l~~~~~i-~~~kg~~~fa~~~~~~~l~V~~k-kki~l~~~~~~~~f~~~kei~~~~~~~~l~~~--~~~i~v~ 173 (823)
.+|++.+-+....+ .....+++++++++...++.+.. +.|.+|....++....++ .-.+.+.+++|. ++.++.|
T Consensus 122 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~ 199 (420)
T 3vl1_A 122 KVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI--GHRATVTDIAIIDRGRNVLSA 199 (420)
T ss_dssp EEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE--CCSSCEEEEEEETTTTEEEEE
T ss_pred EEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc--CCCCcEEEEEEcCCCCEEEEE
Confidence 99998766544433 34457888999887777777754 678888876443222222 235689999997 5567777
Q ss_pred EcC-ceEEEEcCCCCeeeccCCCCC-CCC--EE---------------------EEccCCeEEE-Ee-CCeEEEEcCC-C
Q 003405 174 IRK-GYMILNATNGALSEVFPSGRI-GPP--LV---------------------VSLLSGELLL-GK-ENIGVFVDQN-G 225 (823)
Q Consensus 174 ~~~-~y~lidl~~~~~~~L~~~~~~-~~p--~i---------------------~~~~~~EfLL-~~-~~~gvfv~~~-G 225 (823)
... ...+.|+.+++....+..... ..+ .+ ...+++.+++ +. ++...+.|.. |
T Consensus 200 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 279 (420)
T 3vl1_A 200 SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK 279 (420)
T ss_dssp ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC
T ss_pred cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC
Confidence 774 578999998876554432110 001 11 1124566666 33 4455566643 3
Q ss_pred ccccCCceeecCCCcEEEEeCC---EEEEEeC-CeEEEEEccCCCceeEEEee
Q 003405 226 KLLQADRICWSEAPIAVIIQKP---YAIALLP-RRVEVRSLRVPYALIQTIVL 274 (823)
Q Consensus 226 ~~~~~~~i~w~~~P~~v~~~~P---Yll~~~~-~~ieV~~l~~~~~lvQ~i~l 274 (823)
+....-.-........+++... ++++... +.|.|+++.+....++++..
T Consensus 280 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 332 (420)
T 3vl1_A 280 EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI 332 (420)
T ss_dssp CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE
T ss_pred ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc
Confidence 2211000011233455666533 6776665 68999999743355666654
No 51
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.92 E-value=0.0031 Score=68.46 Aligned_cols=231 Identities=11% Similarity=0.131 Sum_probs=148.1
Q ss_pred CcEEEEEEe--CCEEE-EEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 17 PKIDAVASY--GLKIL-LGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 17 ~~I~ci~~~--~~~L~-vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
..+.|++.. ++.|| .|..+|.|.+|+.... +..+.+.. ...|..+...|..+.+++.
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~------------------~~~~~~~~--~~~v~~~~~spdg~~l~~~ 91 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN------------------NVIATVPA--GSSPQGVAVSPDGKQVYVT 91 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT------------------EEEEEEEC--SSSEEEEEECTTSSEEEEE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCC------------------eEEEEEEC--CCCccceEECCCCCEEEEE
Confidence 457787765 35675 4558999999986531 22333332 2489999999988877665
Q ss_pred e-C-c-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEE--cCeEEEEEEcCCCceeEeeeecCCCCceEEEec--
Q 003405 94 S-E-S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC-- 166 (823)
Q Consensus 94 ~-d-~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~-- 166 (823)
+ + + |.+|++.+-+....+....++..++++++...++++. .+.|.+|....+ +..+.+.....+.+++|.
T Consensus 92 ~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~d 168 (391)
T 1l0q_A 92 NMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK---AVINTVSVGRSPKGIAVTPD 168 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEECCSSEEEEEECTT
T ss_pred ECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEecCCCcceEEECCC
Confidence 5 3 4 9999998776655555556788888888776675553 456666665533 233445556788999997
Q ss_pred CCeEEEEEc--CceEEEEcCCCCeeeccCCCCCCCCE-EEEccCCeEEE-Ee----CCeEEEEcCC-CccccCCceeecC
Q 003405 167 GENICIAIR--KGYMILNATNGALSEVFPSGRIGPPL-VVSLLSGELLL-GK----ENIGVFVDQN-GKLLQADRICWSE 237 (823)
Q Consensus 167 ~~~i~v~~~--~~y~lidl~~~~~~~L~~~~~~~~p~-i~~~~~~EfLL-~~----~~~gvfv~~~-G~~~~~~~i~w~~ 237 (823)
|+.++++.. ....++|+.+++....++.+. .+. +...+++.+++ +. ++...++|.. |+.. ..+.-..
T Consensus 169 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~--~~~~~~~ 244 (391)
T 1l0q_A 169 GTKVYVANFDSMSISVIDTVTNSVIDTVKVEA--APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT--ARIPVGP 244 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECSS--EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE--EEEECCS
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEecCC--CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE--EEEecCC
Confidence 456766654 458899999987766655432 232 33446666655 33 3455566754 4332 2333344
Q ss_pred CCcEEEEe--CCEEEEEe--CCeEEEEEccCCCceeEEEeeC
Q 003405 238 APIAVIIQ--KPYAIALL--PRRVEVRSLRVPYALIQTIVLQ 275 (823)
Q Consensus 238 ~P~~v~~~--~PYll~~~--~~~ieV~~l~~~~~lvQ~i~l~ 275 (823)
.|..+++. ..++++.. .+.+.|+++. ++.+++++...
T Consensus 245 ~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~-~~~~~~~~~~~ 285 (391)
T 1l0q_A 245 DPAGIAVTPDGKKVYVALSFXNTVSVIDTA-TNTITATMAVG 285 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEECS
T ss_pred CccEEEEccCCCEEEEEcCCCCEEEEEECC-CCcEEEEEECC
Confidence 56667665 44775554 3689999986 58888887654
No 52
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.90 E-value=0.0021 Score=68.91 Aligned_cols=192 Identities=9% Similarity=0.048 Sum_probs=120.3
Q ss_pred CCCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceee
Q 003405 15 CSPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (823)
Q Consensus 15 ~~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~ 92 (823)
-...|+|++.. ++.|+.|+.+|.|.+|++.... ......... +..+|..+...|..+.+++
T Consensus 51 h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~ 113 (372)
T 1k8k_C 51 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT----------------WKPTLVILR-INRAARCVRWAPNEKKFAV 113 (372)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE----------------EEEEEECCC-CSSCEEEEEECTTSSEEEE
T ss_pred CCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe----------------eeeeEEeec-CCCceeEEEECCCCCEEEE
Confidence 35679988877 5789999999999999975321 111111122 3678999999999888888
Q ss_pred EeC-c-EEEEeCCCCcc---cccc--cCCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCC--------------C-cee
Q 003405 93 LSE-S-IAFHRLPNLET---IAVL--TKAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGG--------------R-GFV 149 (823)
Q Consensus 93 l~d-~-l~~~~L~~l~~---~~~i--~~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~--------------~-~f~ 149 (823)
.+. + +.+|++..-+. ...+ .....++.++++++...++++. .+.+.+|..... . .-.
T Consensus 114 ~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 193 (372)
T 1k8k_C 114 GSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 193 (372)
T ss_dssp EETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred EeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhh
Confidence 775 4 99998865432 1111 2235688888888776777774 567888885310 0 011
Q ss_pred Eeeeec-CCCCceEEEec--CCeEEEEEcC-ceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-EeCCeEEEEcC
Q 003405 150 EVKDFG-VPDTVKSMSWC--GENICIAIRK-GYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-GKENIGVFVDQ 223 (823)
Q Consensus 150 ~~kei~-~~~~~~~l~~~--~~~i~v~~~~-~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~~~~~gvfv~~ 223 (823)
..+.+. -.+.+.+++|. ++.++.|... ...++|+.+++....+.........+...+++.++. +.++...+++.
T Consensus 194 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~ 272 (372)
T 1k8k_C 194 LMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTY 272 (372)
T ss_dssp EEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEE
T ss_pred heEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEc
Confidence 223332 24578999996 4578877774 578899988876554443221112233446777776 44444444443
No 53
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.90 E-value=0.0011 Score=70.23 Aligned_cols=149 Identities=12% Similarity=0.052 Sum_probs=101.1
Q ss_pred CCcEEEEEEe--CC-EEEEEeCCCcEEEEcC-CCCCCCCCCCCcccccccccceeeeeecC-CCCCCeeEEEEecccCce
Q 003405 16 SPKIDAVASY--GL-KILLGCSDGSLKIYSP-GSSESDRSPPSDYQSLRKESYELERTISG-FSKKPILSMEVLASRQLL 90 (823)
Q Consensus 16 ~~~I~ci~~~--~~-~L~vGT~~G~l~~y~~-~~~~~~~~~~~d~~~l~~~~~~l~~~~~~-~~k~~I~qI~~~~~~~~L 90 (823)
...|+|++.. ++ .|+.|+.+|.|.+|++ .... ...+.. .+..+|..|...+ .+.+
T Consensus 56 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-------------------~~~~~~~~~~~~v~~l~~~~-~~~l 115 (342)
T 1yfq_A 56 KHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS-------------------FQALTNNEANLGICRICKYG-DDKL 115 (342)
T ss_dssp SSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS-------------------EEECBSCCCCSCEEEEEEET-TTEE
T ss_pred CCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc-------------------eEeccccCCCCceEEEEeCC-CCEE
Confidence 4578888765 56 8999999999999997 5321 122232 0367899999999 7777
Q ss_pred eeEeC-c-EEEEeCCC---------CcccccccCCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcC-CCceeEeeeecCC
Q 003405 91 LSLSE-S-IAFHRLPN---------LETIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDG-GRGFVEVKDFGVP 157 (823)
Q Consensus 91 l~l~d-~-l~~~~L~~---------l~~~~~i~~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~-~~~f~~~kei~~~ 157 (823)
++.+. + |.+|++.+ .+++..+.....+..++++++. ++++ ..+.|.+|.... ............+
T Consensus 116 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 193 (342)
T 1yfq_A 116 IAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLK 193 (342)
T ss_dssp EEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCS
T ss_pred EEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCC
Confidence 77775 4 99999866 4444444444567778887654 6655 556888988875 3221222334456
Q ss_pred CCceEEEecC---CeEEEEEcCc-eEEEEcCCC
Q 003405 158 DTVKSMSWCG---ENICIAIRKG-YMILNATNG 186 (823)
Q Consensus 158 ~~~~~l~~~~---~~i~v~~~~~-y~lidl~~~ 186 (823)
..+.+++|.. +.+++|...+ ..+.|+..+
T Consensus 194 ~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp SCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred CceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 7899999964 5677777754 567677665
No 54
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=97.90 E-value=0.0031 Score=66.29 Aligned_cols=164 Identities=13% Similarity=0.175 Sum_probs=107.7
Q ss_pred CCCCcEEEEEEe----CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecc--c
Q 003405 14 NCSPKIDAVASY----GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS--R 87 (823)
Q Consensus 14 ~~~~~I~ci~~~----~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~--~ 87 (823)
.-...|+|++.. ++.|+.|+.||.|.+|++....... ....+.....+.. +..+|..+...|. .
T Consensus 55 ~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~---------~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 124 (351)
T 3f3f_A 55 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC---------SGRRWNKLCTLND-SKGSLYSVKFAPAHLG 124 (351)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTT---------SSCSEEEEEEECC-CSSCEEEEEECCGGGC
T ss_pred cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccc---------cccCcceeeeecc-cCCceeEEEEcCCCCC
Confidence 345679999875 6789999999999999987543211 0112233334433 3678999999998 7
Q ss_pred CceeeEeC-c-EEEEeCCCCcccccc--------------cCCCCcEEEEeeCC---CceEEEEEcCeEEEEEEcCCCce
Q 003405 88 QLLLSLSE-S-IAFHRLPNLETIAVL--------------TKAKGANVYSWDDR---RGFLCFARQKRVCIFRHDGGRGF 148 (823)
Q Consensus 88 ~~Ll~l~d-~-l~~~~L~~l~~~~~i--------------~~~kg~~~fa~~~~---~~~l~V~~kkki~l~~~~~~~~f 148 (823)
+.+++.+. + |.+|++.+.+....+ .....+.+++.+++ ...++++......++........
T Consensus 125 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~ 204 (351)
T 3f3f_A 125 LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL 204 (351)
T ss_dssp SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE
T ss_pred cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce
Confidence 77777765 5 999998765432211 23346677777775 45678887777666665544334
Q ss_pred eEeeeec-CCCCceEEEecCC------eEEEEEc-CceEEEEcCCCC
Q 003405 149 VEVKDFG-VPDTVKSMSWCGE------NICIAIR-KGYMILNATNGA 187 (823)
Q Consensus 149 ~~~kei~-~~~~~~~l~~~~~------~i~v~~~-~~y~lidl~~~~ 187 (823)
.....+. -.+.+.+++|..+ .++.|.. ....++|+.++.
T Consensus 205 ~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 251 (351)
T 3f3f_A 205 HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL 251 (351)
T ss_dssp EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC
T ss_pred eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCc
Confidence 3344433 2468999999844 4666666 457888988653
No 55
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.0011 Score=69.08 Aligned_cols=184 Identities=14% Similarity=0.165 Sum_probs=116.1
Q ss_pred CCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEec-ccCceeeEe
Q 003405 16 SPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLA-SRQLLLSLS 94 (823)
Q Consensus 16 ~~~I~ci~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~-~~~~Ll~l~ 94 (823)
...|.|++..++.++.|+.+|.+.+|+.. .....+.. +..+|..+...+ ..+.+++.+
T Consensus 104 ~~~i~~~~~~~~~l~~~~~d~~i~~~d~~--------------------~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~ 162 (313)
T 3odt_A 104 QGNVCSLSFQDGVVISGSWDKTAKVWKEG--------------------SLVYNLQA-HNASVWDAKVVSFSENKFLTAS 162 (313)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEETT--------------------EEEEEEEC-CSSCEEEEEEEETTTTEEEEEE
T ss_pred ccCEEEEEecCCEEEEEeCCCCEEEEcCC--------------------cEEEeccc-CCCceeEEEEccCCCCEEEEEE
Confidence 45799999999999999999999999811 11222332 367899999998 667777776
Q ss_pred C-c-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeec-CCCCceEEEecCC-e
Q 003405 95 E-S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFG-VPDTVKSMSWCGE-N 169 (823)
Q Consensus 95 d-~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~-~~~~~~~l~~~~~-~ 169 (823)
. + +.+|+...............++.+++.++.. ++++ ..+.|.+|....++ .++.+. -.+.+.+++|..+ .
T Consensus 163 ~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~ 238 (313)
T 3odt_A 163 ADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD---VLRTYEGHESFVYCIKLLPNGD 238 (313)
T ss_dssp TTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECTTSC
T ss_pred CCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh---hhhhhhcCCceEEEEEEecCCC
Confidence 5 4 9999954322221222345677888876655 5555 55678888876442 233332 3468899999843 5
Q ss_pred EEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEEE-eCCeEEEEcCC
Q 003405 170 ICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLG-KENIGVFVDQN 224 (823)
Q Consensus 170 i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL~-~~~~gvfv~~~ 224 (823)
++.|.. ....++|+.+++....+......-..+...+++.++.+ .|+...+.+..
T Consensus 239 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 239 IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESC
T ss_pred EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCC
Confidence 666665 56788999988765555432211112334456665554 34444555543
No 56
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=97.87 E-value=0.007 Score=67.19 Aligned_cols=188 Identities=11% Similarity=0.029 Sum_probs=112.1
Q ss_pred CCCcEEEEEEe---CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecc-cCce
Q 003405 15 CSPKIDAVASY---GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS-RQLL 90 (823)
Q Consensus 15 ~~~~I~ci~~~---~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~-~~~L 90 (823)
...+|+|++.+ ++.|+.|+.||.|.+|++..... .....+.+ +..+|+.|...|. .++|
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~----------------~~~~~~~g-H~~~V~~l~f~p~~~~~l 180 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK----------------PTFIKGIG-AGGSITGLKFNPLNTNQF 180 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC----------------CEEECCCS-SSCCCCEEEECSSCTTEE
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc----------------eeEEEccC-CCCCEEEEEEeCCCCCEE
Confidence 34579999986 35789999999999999764321 11112222 3679999999874 5677
Q ss_pred eeEeC-c-EEEEeCCCCcc--ccccc-CCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeec-CCCCceEE
Q 003405 91 LSLSE-S-IAFHRLPNLET--IAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFG-VPDTVKSM 163 (823)
Q Consensus 91 l~l~d-~-l~~~~L~~l~~--~~~i~-~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~-~~~~~~~l 163 (823)
++.+. + |++|++.+-.. ..... ....+.+++++++...++++ ..+.|.+|...+. .. ..+. -.+.|.++
T Consensus 181 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~---~~~~~h~~~v~~v 256 (435)
T 4e54_B 181 YASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-EL---WNLRMHKKKVTHV 256 (435)
T ss_dssp EEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BC---CCSBCCSSCEEEE
T ss_pred EEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-ee---EEEecccceEEee
Confidence 77764 5 99999864221 11111 11234567777776677777 4466778776532 22 2222 24688999
Q ss_pred Eec--CC-eEEEEEc-CceEEEEcCCCCeeecc-CCCCCCCCEE--EEccCCeEEE-E-eCCeEEEEcC
Q 003405 164 SWC--GE-NICIAIR-KGYMILNATNGALSEVF-PSGRIGPPLV--VSLLSGELLL-G-KENIGVFVDQ 223 (823)
Q Consensus 164 ~~~--~~-~i~v~~~-~~y~lidl~~~~~~~L~-~~~~~~~p~i--~~~~~~EfLL-~-~~~~gvfv~~ 223 (823)
+|. ++ .++.|.. ....++|+.+++....+ .......++. ...+++.+|+ + .|+...+.+.
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~ 325 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA 325 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEES
T ss_pred eecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEEC
Confidence 997 34 4555655 45778999876543222 1111122332 2335677776 3 4455555553
No 57
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=97.86 E-value=0.0057 Score=64.19 Aligned_cols=198 Identities=13% Similarity=0.142 Sum_probs=118.8
Q ss_pred cccCCCCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecc--
Q 003405 11 LISNCSPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS-- 86 (823)
Q Consensus 11 l~~~~~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~-- 86 (823)
++..-...|+|++.. ++.|+.|+.||.|.+|++..... .+.....+.+ +..+|..|...+.
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--------------~~~~~~~~~~-~~~~v~~~~~~~~~d 70 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS--------------NWELSDSWRA-HDSSIVAIDWASPEY 70 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC--------------CEEEEEEEEC-CSSCEEEEEECCGGG
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC--------------cceecceecc-CCCcEEEEEEcCCCC
Confidence 344445689999875 46899999999999999874321 2233444443 3679999999984
Q ss_pred cCceeeEeC-c-EEEEeCCCCc---------cccccc-CCCCcEEEEeeCC--CceEEEE-EcCeEEEEEEcCCCc---e
Q 003405 87 RQLLLSLSE-S-IAFHRLPNLE---------TIAVLT-KAKGANVYSWDDR--RGFLCFA-RQKRVCIFRHDGGRG---F 148 (823)
Q Consensus 87 ~~~Ll~l~d-~-l~~~~L~~l~---------~~~~i~-~~kg~~~fa~~~~--~~~l~V~-~kkki~l~~~~~~~~---f 148 (823)
.+++++.+. + |.+|++.+-+ ....+. ....++.++++++ ...++++ ..+.|.+|....++. +
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 150 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSW 150 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCC
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccc
Confidence 677777764 5 9999986542 222222 2346778888877 5556666 456788888764321 2
Q ss_pred eEeee---e-----cCCCCceEEEec-----CCeEEEEEcCceEEEEcCC-CCeeeccCCCCCCCC--EEEEccCC----
Q 003405 149 VEVKD---F-----GVPDTVKSMSWC-----GENICIAIRKGYMILNATN-GALSEVFPSGRIGPP--LVVSLLSG---- 208 (823)
Q Consensus 149 ~~~ke---i-----~~~~~~~~l~~~-----~~~i~v~~~~~y~lidl~~-~~~~~L~~~~~~~~p--~i~~~~~~---- 208 (823)
....+ + .....+.+++|. ++.+++|...+..+++... +....+........+ .+...+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence 11111 1 123577888886 5578888887776666544 443223222111123 23344554
Q ss_pred eEEE-E-eCCeEEEEcC
Q 003405 209 ELLL-G-KENIGVFVDQ 223 (823)
Q Consensus 209 EfLL-~-~~~~gvfv~~ 223 (823)
.+++ + .|+...+.+.
T Consensus 231 ~~l~s~~~dg~i~iwd~ 247 (351)
T 3f3f_A 231 QLIATGCKDGRIRIFKI 247 (351)
T ss_dssp EEEEEEETTSCEEEEEE
T ss_pred eEEEEEcCCCeEEEEeC
Confidence 5665 3 3444445443
No 58
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.0011 Score=79.72 Aligned_cols=235 Identities=14% Similarity=0.086 Sum_probs=137.9
Q ss_pred ccCCCCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecc--c
Q 003405 12 ISNCSPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS--R 87 (823)
Q Consensus 12 ~~~~~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~--~ 87 (823)
+..-...|+|++.. ++.|+.|+.||.|.+|++... .......+.+ ++.+|..+...+. .
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~----------------~~~~~~~l~~-h~~~V~~l~~s~~~~~ 67 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE----------------THKLIDTLTG-HEGPVWRVDWAHPKFG 67 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT----------------EEEEEEEECC-CSSCEEEEEECCTTSC
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC----------------CCccceeccC-CcCceEEEEecCCCCC
Confidence 33445689998865 578999999999999987532 1223334443 3679999999887 6
Q ss_pred CceeeEeC-c-EEEEeCCCCc--ccccc-cCCCCcEEEEeeCC--CceEEEE-EcCeEEEEEEcCCCceeEeeeecCCCC
Q 003405 88 QLLLSLSE-S-IAFHRLPNLE--TIAVL-TKAKGANVYSWDDR--RGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDT 159 (823)
Q Consensus 88 ~~Ll~l~d-~-l~~~~L~~l~--~~~~i-~~~kg~~~fa~~~~--~~~l~V~-~kkki~l~~~~~~~~f~~~kei~~~~~ 159 (823)
+.+++.+. | |++|++.+.+ ..... .....+++++++++ ...++++ ..+.|.+|....+.......-...++.
T Consensus 68 ~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~ 147 (753)
T 3jro_A 68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147 (753)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC
T ss_pred CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc
Confidence 77887775 5 9999987653 22222 23457888888887 5566666 446788888874421111111234578
Q ss_pred ceEEEecC---------------CeEEEEEc-CceEEEEcCCCCee--eccCCCCCCCCE--EEEccC---CeEEEE--e
Q 003405 160 VKSMSWCG---------------ENICIAIR-KGYMILNATNGALS--EVFPSGRIGPPL--VVSLLS---GELLLG--K 214 (823)
Q Consensus 160 ~~~l~~~~---------------~~i~v~~~-~~y~lidl~~~~~~--~L~~~~~~~~p~--i~~~~~---~EfLL~--~ 214 (823)
+.+++|.. +.++.|.. ....++|+.++... .+........++ +...++ +.++++ .
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence 89999964 45777776 45788898876321 111111111232 334466 677763 3
Q ss_pred CCeEEEEcCCCc-cc-cCCc---eeecCCCcEEEEe--CCEEEEEeC-CeEEEEEcc
Q 003405 215 ENIGVFVDQNGK-LL-QADR---ICWSEAPIAVIIQ--KPYAIALLP-RRVEVRSLR 263 (823)
Q Consensus 215 ~~~gvfv~~~G~-~~-~~~~---i~w~~~P~~v~~~--~PYll~~~~-~~ieV~~l~ 263 (823)
|+...+.|.... .. .... ....+....+.+. ..++++... +.|.|+++.
T Consensus 228 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 455556664332 10 0111 1123334455553 346665554 567777764
No 59
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.0097 Score=66.31 Aligned_cols=214 Identities=14% Similarity=0.099 Sum_probs=122.7
Q ss_pred CCeeEEEEecccCceeeEe--Cc-EEEEeCC--CCcccccc---cCCCCcEEEEeeCCCceEEEEEc-CeEEEEEEcCCC
Q 003405 76 KPILSMEVLASRQLLLSLS--ES-IAFHRLP--NLETIAVL---TKAKGANVYSWDDRRGFLCFARQ-KRVCIFRHDGGR 146 (823)
Q Consensus 76 ~~I~qI~~~~~~~~Ll~l~--d~-l~~~~L~--~l~~~~~i---~~~kg~~~fa~~~~~~~l~V~~k-kki~l~~~~~~~ 146 (823)
.+|..+..-|..+.|++.+ |+ |.+|++. +-+....+ .....+++++++++...++++.. ..+.++....+.
T Consensus 103 ~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~ 182 (450)
T 2vdu_B 103 SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIP 182 (450)
T ss_dssp CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCC
T ss_pred CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcc
Confidence 3699999999988875555 34 9999987 54444333 23356888999888777888755 556566554332
Q ss_pred cee-Eeeee-cCCCCceEEEecCC-----eEEEEEc-CceEEEEcCCCCeeeccCCCCCCC-CEEEEccCCeEEE-Ee-C
Q 003405 147 GFV-EVKDF-GVPDTVKSMSWCGE-----NICIAIR-KGYMILNATNGALSEVFPSGRIGP-PLVVSLLSGELLL-GK-E 215 (823)
Q Consensus 147 ~f~-~~kei-~~~~~~~~l~~~~~-----~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~-p~i~~~~~~EfLL-~~-~ 215 (823)
... ..+.+ .-.+.+.+++|..+ .++.|.. ....++|+.+++....+..+-... -.+... ++.+|+ +. |
T Consensus 183 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d 261 (450)
T 2vdu_B 183 EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD 261 (450)
T ss_dssp CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS
T ss_pred cccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC
Confidence 111 11122 12468899999844 5666666 467889999887544332222111 123334 666666 33 4
Q ss_pred CeEEEEcC-CCccccC-------Cce-----------------eecCCCcEEEEe--CCEEEEEe--CCeEEEEEc--cC
Q 003405 216 NIGVFVDQ-NGKLLQA-------DRI-----------------CWSEAPIAVIIQ--KPYAIALL--PRRVEVRSL--RV 264 (823)
Q Consensus 216 ~~gvfv~~-~G~~~~~-------~~i-----------------~w~~~P~~v~~~--~PYll~~~--~~~ieV~~l--~~ 264 (823)
+...+.|. .|+.... .++ .+......+++. ..|+++.. .+.|.|+++ .
T Consensus 262 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~- 340 (450)
T 2vdu_B 262 DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEK- 340 (450)
T ss_dssp SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSS-
T ss_pred CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccC-
Confidence 45555664 4443210 001 111223345554 56888887 468999998 4
Q ss_pred CC---ceeEEEeeCCc-ccccccCCeEEEec
Q 003405 265 PY---ALIQTIVLQNV-RHLIPSSNAVVVAL 291 (823)
Q Consensus 265 ~~---~lvQ~i~l~~~-~~l~~~~~~v~v~s 291 (823)
++ ..++++...+. ..+....+.++++.
T Consensus 341 ~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~ 371 (450)
T 2vdu_B 341 QKGDLALKQIITFPYNVISLSAHNDEFQVTL 371 (450)
T ss_dssp STTCEEEEEEEECSSCEEEEEEETTEEEEEE
T ss_pred CCCceeeccEeccCCceEEEEecCCcEEEEE
Confidence 24 56777766532 22222334566554
No 60
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=97.82 E-value=0.0069 Score=66.29 Aligned_cols=151 Identities=17% Similarity=0.242 Sum_probs=101.4
Q ss_pred cEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC
Q 003405 18 KIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE 95 (823)
Q Consensus 18 ~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d 95 (823)
.|+|++.. ++.|+.|+.||.|.+|++... +....+.+ +..+|..+...|..+.+++.++
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~------------------~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~ 185 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENR------------------KIVMILQG-HEQDIYSLDYFPSGDKLVSGSG 185 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTT------------------EEEEEECC-CSSCEEEEEECTTSSEEEEEET
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCC------------------cEEEEEcc-CCCCEEEEEEcCCCCEEEEecC
Confidence 37887765 568999999999999997532 22334443 3678999999999888888875
Q ss_pred -c-EEEEeCCCCcccccccCCCCcEEEEeeC-CCceEEEE-EcCeEEEEEEcCCCceeEee-e----ecCCCCceEEEec
Q 003405 96 -S-IAFHRLPNLETIAVLTKAKGANVYSWDD-RRGFLCFA-RQKRVCIFRHDGGRGFVEVK-D----FGVPDTVKSMSWC 166 (823)
Q Consensus 96 -~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~-~~~~l~V~-~kkki~l~~~~~~~~f~~~k-e----i~~~~~~~~l~~~ 166 (823)
+ |++|++.+-+....+....++..+++.+ +...++++ ..+.|.+|....+.....+. + ..-.+.+.+++|.
T Consensus 186 d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 265 (393)
T 1erj_A 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 265 (393)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC
T ss_pred CCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC
Confidence 4 9999998765544444556788888887 44456666 45678888776442222221 1 1124678999997
Q ss_pred --CCeEEEEEc-CceEEEEcCCCC
Q 003405 167 --GENICIAIR-KGYMILNATNGA 187 (823)
Q Consensus 167 --~~~i~v~~~-~~y~lidl~~~~ 187 (823)
|..++.|.. +...+.|+.++.
T Consensus 266 ~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 266 RDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp TTSSEEEEEETTSEEEEEEC----
T ss_pred CCCCEEEEEeCCCEEEEEECCCCC
Confidence 456777776 457888987643
No 61
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.82 E-value=0.002 Score=72.00 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=107.1
Q ss_pred CCCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe
Q 003405 15 CSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 15 ~~~~I~ci~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
-...|.|+...++.++.|+.||.|.+|++... +....+.+ +..+|..+...+..+.+++-+
T Consensus 269 ~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~------------------~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~ 329 (464)
T 3v7d_B 269 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM------------------KCLYILSG-HTDRIYSTIYDHERKRCISAS 329 (464)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTT------------------EEEEEECC-CSSCEEEEEEETTTTEEEEEE
T ss_pred ccceEEEEcCCCCEEEEEeCCCeEEEEECCCC------------------cEEEEecC-CCCCEEEEEEcCCCCEEEEEe
Confidence 34578999999999999999999999997531 22334433 367899999999988888877
Q ss_pred C-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeecCCCCceEEEec--CC
Q 003405 95 E-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GE 168 (823)
Q Consensus 95 d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~--~~ 168 (823)
. + |++|++.+.+.+..+. ....++.++.+. ..++.+ ..+.|.+|...... .......+..+..++|. +.
T Consensus 330 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~s~dg~v~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~ 404 (464)
T 3v7d_B 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS---RKFSYHHTNLSAITTFYVSDN 404 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECS--SEEEEEETTSEEEEEETTTCC---EEEEEECTTCCCEEEEEECSS
T ss_pred CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC--CEEEEEeCCCcEEEEECCCCc---eeeeecCCCCccEEEEEeCCC
Confidence 5 5 9999998766555443 234567777763 456665 55678888876432 22222334445555554 67
Q ss_pred eEEEEEcCceEEEEcCCCCeee
Q 003405 169 NICIAIRKGYMILNATNGALSE 190 (823)
Q Consensus 169 ~i~v~~~~~y~lidl~~~~~~~ 190 (823)
.++.|......++|+.+|+...
T Consensus 405 ~l~~~~dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 405 ILVSGSENQFNIYNLRSGKLVH 426 (464)
T ss_dssp EEEEEETTEEEEEETTTCCEEE
T ss_pred EEEEecCCeEEEEECCCCcEEe
Confidence 8888888889999999987654
No 62
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.82 E-value=0.0059 Score=64.92 Aligned_cols=186 Identities=9% Similarity=0.064 Sum_probs=119.4
Q ss_pred CCcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~~--~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
...|.|++... ..++.|+.||.|.+|++... +..+.+.. +...|..+..-|..+.+++-
T Consensus 80 ~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~------------------~~~~~~~~-~~~~~~~~~~spdg~~l~~g 140 (321)
T 3ow8_A 80 QLGVVSVDISHTLPIAASSSLDAHIRLWDLENG------------------KQIKSIDA-GPVDAWTLAFSPDSQYLATG 140 (321)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTT------------------EEEEEEEC-CTTCCCCEEECTTSSEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC------------------CEEEEEeC-CCccEEEEEECCCCCEEEEE
Confidence 34688877654 57899999999999997632 12233332 24578889999988888877
Q ss_pred eC-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEeeeecC-CCCceEEEec--
Q 003405 94 SE-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFGV-PDTVKSMSWC-- 166 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kei~~-~~~~~~l~~~-- 166 (823)
+. + +.+|++.+-+....+. ....+..++++++...++++. .+.|.+|....++ .++.+.- ..++.+++|.
T Consensus 141 ~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~spd 217 (321)
T 3ow8_A 141 THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK---LLHTLEGHAMPIRSLTFSPD 217 (321)
T ss_dssp CTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEEEECCCSSCCCEEEECTT
T ss_pred cCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---EEEEEcccCCceeEEEEcCC
Confidence 65 4 9999997665443332 234577888888877787774 5667788776432 2333332 3578999997
Q ss_pred CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-E-eCCeEEEEcC
Q 003405 167 GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-G-KENIGVFVDQ 223 (823)
Q Consensus 167 ~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~-~~~~gvfv~~ 223 (823)
+..|+.|.. ....+.|+.++.....+......--.+...+++.+|+ + .|....+.|.
T Consensus 218 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~ 277 (321)
T 3ow8_A 218 SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277 (321)
T ss_dssp SCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence 445666666 4578899998765544432211111234446777776 3 3444555554
No 63
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.82 E-value=0.0031 Score=69.53 Aligned_cols=172 Identities=11% Similarity=0.088 Sum_probs=111.8
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe
Q 003405 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 17 ~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
..|.|++.. ++.++.|+.+|.|.+|++.... ....+. .+...+..+...|..+.+++.+
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~------------------~~~~~~-~~~~~~~~~~~~~~~~~l~~~~ 230 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQANAVHVFDLKTLA------------------YKATVD-LTGKWSKILLYDPIRDLVYCSN 230 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC------------------EEEEEE-CSSSSEEEEEEETTTTEEEEEE
T ss_pred CceeEEEEcCCCEEEEEECCCCEEEEEECCCce------------------EEEEEc-CCCCCeeEEEEcCCCCEEEEEe
Confidence 367777763 3466777889999999975321 122333 2356899999999888876665
Q ss_pred --Cc-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEE---------cCeEEEEEEcCCCceeEeeeecCCCCceE
Q 003405 95 --ES-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFAR---------QKRVCIFRHDGGRGFVEVKDFGVPDTVKS 162 (823)
Q Consensus 95 --d~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~---------kkki~l~~~~~~~~f~~~kei~~~~~~~~ 162 (823)
|+ |.+|++.+.+....+....++..++++++...++++. .+.|.+|....++ ..+.+..++.+.+
T Consensus 231 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~~ 307 (433)
T 3bws_A 231 WISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK---LIDTIGPPGNKRH 307 (433)
T ss_dssp TTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE---EEEEEEEEECEEE
T ss_pred cCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc---EEeeccCCCCcce
Confidence 34 9999998766555555555677888888777777775 3466666665332 2333444567889
Q ss_pred EEec--CCeEEEEEc--CceEEEEcCCCCeeeccCCCCCCCCE-EEEccCCeEEE
Q 003405 163 MSWC--GENICIAIR--KGYMILNATNGALSEVFPSGRIGPPL-VVSLLSGELLL 212 (823)
Q Consensus 163 l~~~--~~~i~v~~~--~~y~lidl~~~~~~~L~~~~~~~~p~-i~~~~~~EfLL 212 (823)
++|. |+.++++.. ....++|+.+++....++.+. .|. +...+++.+++
T Consensus 308 ~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~ 360 (433)
T 3bws_A 308 IVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFD--KPNTIALSPDGKYLY 360 (433)
T ss_dssp EEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCC--CCCeEEEcCCCCEEE
Confidence 9997 446777644 567889999887666555432 233 33345666554
No 64
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.82 E-value=0.0026 Score=68.68 Aligned_cols=177 Identities=10% Similarity=0.121 Sum_probs=111.9
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecc--cCceee
Q 003405 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS--RQLLLS 92 (823)
Q Consensus 17 ~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~--~~~Ll~ 92 (823)
..|+|+... ++.|+.|+.||.+.+|++... +..+.+.+. ..+|..+.+.+. .+.+++
T Consensus 155 ~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~------------------~~~~~~~~h-~~~v~~~~~~~~~~g~~l~s 215 (354)
T 2pbi_B 155 NYLSACSFTNSDMQILTASGDGTCALWDVESG------------------QLLQSFHGH-GADVLCLDLAPSETGNTFVS 215 (354)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTC------------------CEEEEEECC-SSCEEEEEECCCSSCCEEEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC------------------eEEEEEcCC-CCCeEEEEEEeCCCCCEEEE
Confidence 356776655 458999999999999997642 123344433 568998888774 356776
Q ss_pred EeC-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeecCCCCceEEEec--
Q 003405 93 LSE-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC-- 166 (823)
Q Consensus 93 l~d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~-- 166 (823)
-+. + |.+|++.+-+.+..+. ....+++++++++...++.+ ..+.|.+|....++.......-.....+.+++|.
T Consensus 216 gs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (354)
T 2pbi_B 216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS 295 (354)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred EeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCC
Confidence 664 5 9999998765544432 23468888998877777776 4567888887644222211111122357788887
Q ss_pred CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE
Q 003405 167 GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL 212 (823)
Q Consensus 167 ~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL 212 (823)
|..++.|.. ....++|+.+++....+......--.+...+++.+|+
T Consensus 296 g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~ 342 (354)
T 2pbi_B 296 GRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFC 342 (354)
T ss_dssp SSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred CCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEE
Confidence 567888877 4688999988765444332111111233446666665
No 65
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=97.81 E-value=0.0011 Score=71.71 Aligned_cols=193 Identities=8% Similarity=0.072 Sum_probs=116.3
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
...|.|++.. ++.|+.|+.||.|.+|++..... +.....+.. +..+|..+...|..+.+++.
T Consensus 55 ~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~---------------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 118 (377)
T 3dwl_C 55 DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT---------------WKQTLVLLR-LNRAATFVRWSPNEDKFAVG 118 (377)
T ss_dssp SSCEEEEEECTTTCCEEEEETTSSEEEC------C---------------CCCEEECCC-CSSCEEEEECCTTSSCCEEE
T ss_pred CceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc---------------eeeeeEecc-cCCceEEEEECCCCCEEEEE
Confidence 4579998876 46899999999999999765320 111222222 36789999999988888888
Q ss_pred eC-c-EEEEeCCCCcc---ccccc--CCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCC--------------ce-eE
Q 003405 94 SE-S-IAFHRLPNLET---IAVLT--KAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGR--------------GF-VE 150 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~~---~~~i~--~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~--------------~f-~~ 150 (823)
+. + |.+|++.+-+. ...+. ....+++++++++...++++. .+.|.+|...... .+ ..
T Consensus 119 ~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 198 (377)
T 3dwl_C 119 SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTV 198 (377)
T ss_dssp ESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEE
T ss_pred ecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhh
Confidence 75 4 99999876442 23333 245688899988776777774 5678899874210 01 22
Q ss_pred eeeecCCCCceEEEec--CCeEEEEEcC-ceEEEEcCCCCe----eeccCCCCCCCCEEEEccCCeEEE-EeCCeEEEEc
Q 003405 151 VKDFGVPDTVKSMSWC--GENICIAIRK-GYMILNATNGAL----SEVFPSGRIGPPLVVSLLSGELLL-GKENIGVFVD 222 (823)
Q Consensus 151 ~kei~~~~~~~~l~~~--~~~i~v~~~~-~y~lidl~~~~~----~~L~~~~~~~~p~i~~~~~~EfLL-~~~~~gvfv~ 222 (823)
.+.+.-.+.+.+++|. |..++.|... ...++|+.+++. ...+......-..+...+++.+|+ +.++..++++
T Consensus 199 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 278 (377)
T 3dwl_C 199 CAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQ 278 (377)
T ss_dssp EECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEEC
T ss_pred hhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEE
Confidence 2334345679999997 4567777764 567889988765 222221111112234456788877 4555555555
Q ss_pred CC
Q 003405 223 QN 224 (823)
Q Consensus 223 ~~ 224 (823)
..
T Consensus 279 ~~ 280 (377)
T 3dwl_C 279 GN 280 (377)
T ss_dssp CC
T ss_pred eC
Confidence 43
No 66
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.81 E-value=0.0059 Score=64.15 Aligned_cols=225 Identities=11% Similarity=0.073 Sum_probs=132.0
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe
Q 003405 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 17 ~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
..|.|+... ++.|+.|+.||.|.+|++.... ....+.+ +..+|..|..-|..+++++-+
T Consensus 56 ~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~------------------~~~~~~~-h~~~v~~~~~~~~~~~l~sgs 116 (304)
T 2ynn_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE------------------KVVDFEA-HPDYIRSIAVHPTKPYVLSGS 116 (304)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC------------------EEEEEEC-CSSCEEEEEECSSSSEEEEEE
T ss_pred CcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc------------------EEEEEeC-CCCcEEEEEEcCCCCEEEEEC
Confidence 456665544 5799999999999999976421 2234443 367899999999988888887
Q ss_pred C-c-EEEEeCCCCcc-ccccc-CCCCcEEEEeeCC-CceEEEE-EcCeEEEEEEcCCCceeEeeeecCCCCceEEEec--
Q 003405 95 E-S-IAFHRLPNLET-IAVLT-KAKGANVYSWDDR-RGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC-- 166 (823)
Q Consensus 95 d-~-l~~~~L~~l~~-~~~i~-~~kg~~~fa~~~~-~~~l~V~-~kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~-- 166 (823)
+ + |++|++.+-.. ...+. ....++++++++. ...++.+ ..+.|.+|............ ..-...+..+.|.
T Consensus 117 ~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~ 195 (304)
T 2ynn_A 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPL 195 (304)
T ss_dssp TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE-CCCTTCEEEEEECCS
T ss_pred CCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec-cCCcCcEEEEEEEEc
Confidence 6 4 99999864321 12222 2345788888874 4456666 56778888876432111111 1112456677775
Q ss_pred --CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-E-eCCeEEEEcCC-CccccCCceeecCCC-
Q 003405 167 --GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-G-KENIGVFVDQN-GKLLQADRICWSEAP- 239 (823)
Q Consensus 167 --~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~-~~~~gvfv~~~-G~~~~~~~i~w~~~P- 239 (823)
+..++.|.. ....+.|+.+++....+......--.+...+++.+|+ + .|+...+.|.. |+.. .++.-...+
T Consensus 196 ~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~--~~~~~~~~~~ 273 (304)
T 2ynn_A 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE--KTLNVGLERS 273 (304)
T ss_dssp TTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE--EEECCSSSSE
T ss_pred CCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee--eeccCCCccE
Confidence 345666766 4578899998865443332211111233446666666 3 34455555643 3322 223222222
Q ss_pred cEEEEeCC----EEEEEeCCeEEEEEcc
Q 003405 240 IAVIIQKP----YAIALLPRRVEVRSLR 263 (823)
Q Consensus 240 ~~v~~~~P----Yll~~~~~~ieV~~l~ 263 (823)
..+++..+ |+.+-.++++.|.++.
T Consensus 274 ~~~~~~~~~~~~~~asg~~~g~~~~~~~ 301 (304)
T 2ynn_A 274 WCIATHPTGRKNYIASGFDNGFTVLSLG 301 (304)
T ss_dssp EEEEECTTCGGGCEEEEETTEEEEEECC
T ss_pred EEEEECCCCCceEEEEecCCceEEEEec
Confidence 23444332 6777777777777764
No 67
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=97.81 E-value=0.00021 Score=77.48 Aligned_cols=154 Identities=11% Similarity=0.159 Sum_probs=99.0
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
...|+|++.. ++.|+.|+.+|.|.+|++... .+.....+.+ +..+|..+...|..+++++.
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~----------------~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~ 73 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGN----------------GWKHARTFSD-HDKIVTCVDWAPKSNRIVTC 73 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETT----------------EEEECCCBCC-CSSCEEEEEECTTTCCEEEE
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCC----------------ceEEEEEEec-CCceEEEEEEeCCCCEEEEE
Confidence 4467777765 578999999999999997632 1122233333 36789999999998888888
Q ss_pred eC-c-EEEEeCCCCc---ccccc-cCCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEeeeec--CCCCceEEE
Q 003405 94 SE-S-IAFHRLPNLE---TIAVL-TKAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFG--VPDTVKSMS 164 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~---~~~~i-~~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kei~--~~~~~~~l~ 164 (823)
+. + |++|++.+-+ +...+ .....+++++++++...++++. .+.|.+|.+..+..+...+.+. -.+.+.+++
T Consensus 74 s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~ 153 (377)
T 3dwl_C 74 SQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD 153 (377)
T ss_dssp ETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred eCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence 85 4 9999987644 32222 2345788888888766677764 5668787776443222234443 357899999
Q ss_pred ec--CCeEEEEEc-CceEEEEcCCC
Q 003405 165 WC--GENICIAIR-KGYMILNATNG 186 (823)
Q Consensus 165 ~~--~~~i~v~~~-~~y~lidl~~~ 186 (823)
|. ++.++.|.. ....++|+.++
T Consensus 154 ~~~~~~~l~~~~~d~~i~iwd~~~~ 178 (377)
T 3dwl_C 154 WHPNNVLLAAGCADRKAYVLSAYVR 178 (377)
T ss_dssp ECTTSSEEEEEESSSCEEEEEECCS
T ss_pred EcCCCCEEEEEeCCCEEEEEEEEec
Confidence 97 456777776 45788998643
No 68
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.80 E-value=0.0047 Score=68.01 Aligned_cols=256 Identities=13% Similarity=0.113 Sum_probs=150.8
Q ss_pred EEEEEEe-CCEEEE-EeCCCcEEEEcCCCCCCCCCCCCcccccccccceeee--eecCCCCCCeeEEEEecccCceeeEe
Q 003405 19 IDAVASY-GLKILL-GCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELER--TISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 19 I~ci~~~-~~~L~v-GT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~--~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
+.|++.. ++.+++ |..+|.|.+|+...... ..... ... .+...|..+...+...++++.+
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~---------------~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~s~~ 188 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQT---------------VRLSPPEKYK-KKLGFVETISIPEHNELWVSQM 188 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCE---------------EEECCCHHHH-TTCCEEEEEEEGGGTEEEEEEG
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeE---------------eeecCccccc-ccCCceeEEEEcCCCEEEEEEC
Confidence 4444443 455555 45678899998663211 00000 111 1245788888866666666665
Q ss_pred C-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEEE--cCeEEEEEEcCCCceeEeeeecCCCCceEEEec--C
Q 003405 95 E-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFAR--QKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--G 167 (823)
Q Consensus 95 d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~--~ 167 (823)
+ + |.+|++.+.+....+. ....+..++++++...++++. .+.|.+|....+ ...+.+.....|.+++|. |
T Consensus 189 ~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~g 265 (433)
T 3bws_A 189 QANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK---LEIRKTDKIGLPRGLLLSKDG 265 (433)
T ss_dssp GGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEECCCCSEEEEEEECTTS
T ss_pred CCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC---cEEEEecCCCCceEEEEcCCC
Confidence 4 4 9999998766554443 334678888988877776664 466777666533 234455556778999997 4
Q ss_pred CeEEEEEc---------CceEEEEcCCCCeeeccCCCCCCCCE-EEEccCCeEE-EE--eCCeEEEEcCC-CccccCCce
Q 003405 168 ENICIAIR---------KGYMILNATNGALSEVFPSGRIGPPL-VVSLLSGELL-LG--KENIGVFVDQN-GKLLQADRI 233 (823)
Q Consensus 168 ~~i~v~~~---------~~y~lidl~~~~~~~L~~~~~~~~p~-i~~~~~~EfL-L~--~~~~gvfv~~~-G~~~~~~~i 233 (823)
+.++++.. ....++|+.+++......... .|. +...+++..+ ++ .++...+++.+ |+.. ..+
T Consensus 266 ~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~--~~~ 341 (433)
T 3bws_A 266 KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG--NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ--KSI 341 (433)
T ss_dssp SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE--CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE--EEE
T ss_pred CEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC--CcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE--EEe
Confidence 57777763 356789999887655543221 232 3344566544 43 24555666764 3332 344
Q ss_pred eecCCCcEEEEe--CCEEEEEeCC----------------eEEEEEccCCCceeEEEeeCCc-ccc--cccCCeEEEec-
Q 003405 234 CWSEAPIAVIIQ--KPYAIALLPR----------------RVEVRSLRVPYALIQTIVLQNV-RHL--IPSSNAVVVAL- 291 (823)
Q Consensus 234 ~w~~~P~~v~~~--~PYll~~~~~----------------~ieV~~l~~~~~lvQ~i~l~~~-~~l--~~~~~~v~v~s- 291 (823)
.-...|..+++. ..++++.... .|.++++. ++..++.+..... ..+ .+.++.+++++
T Consensus 342 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 420 (433)
T 3bws_A 342 PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT-TDTVKEFWEAGNQPTGLDVSPDNRYLVISDF 420 (433)
T ss_dssp ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT-TTEEEEEEECSSSEEEEEECTTSCEEEEEET
T ss_pred cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC-CCcEEEEecCCCCCceEEEcCCCCEEEEEEC
Confidence 445566777776 3477776653 78888886 5778887765332 112 23344555553
Q ss_pred -cceEEEe
Q 003405 292 -ENSIFGL 298 (823)
Q Consensus 292 -~~~I~~l 298 (823)
++.|...
T Consensus 421 ~d~~i~v~ 428 (433)
T 3bws_A 421 LDHQIRVY 428 (433)
T ss_dssp TTTEEEEE
T ss_pred CCCeEEEE
Confidence 4555544
No 69
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.80 E-value=0.037 Score=58.94 Aligned_cols=232 Identities=12% Similarity=0.091 Sum_probs=138.2
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
...|.|++.. ++.|+.|+.||.|.+|+..... ....+. .+..+|..+...|..+.+++-
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~------------------~~~~~~-~~~~~v~~~~~s~~~~~l~s~ 115 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN------------------KVHAIP-LRSSWVMTCAYAPSGNYVACG 115 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC------------------EEEEEE-CSSSCEEEEEECTTSSEEEEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC------------------cceEee-cCCccEEEEEECCCCCEEEEE
Confidence 4578888765 4689999999999999865321 122333 235689999999998888877
Q ss_pred eC-c-EEEEeCCCCcc----ccccc-CCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeec-CCCCceEEE
Q 003405 94 SE-S-IAFHRLPNLET----IAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFG-VPDTVKSMS 164 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~~----~~~i~-~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~-~~~~~~~l~ 164 (823)
+. + +.+|++.+-+. ...+. ....+++++..++. .++.+ ..+.|.+|....+. ....+. -.+.+.+++
T Consensus 116 ~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~---~~~~~~~h~~~v~~~~ 191 (340)
T 1got_B 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQ---QTTTFTGHTGDVMSLS 191 (340)
T ss_dssp ETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEE
T ss_pred eCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCc---EEEEEcCCCCceEEEE
Confidence 75 4 99999865421 11111 22345555555443 45554 56778888776432 222332 245789999
Q ss_pred ec--CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-Ee-CCeEEEEcCC-CccccCCceeecC-
Q 003405 165 WC--GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-GK-ENIGVFVDQN-GKLLQADRICWSE- 237 (823)
Q Consensus 165 ~~--~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~~-~~~gvfv~~~-G~~~~~~~i~w~~- 237 (823)
|. +..++.|.. ....+.|+.++.....+......-..+...+++.+++ +. |+...+.|.. |... ..+....
T Consensus 192 ~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~--~~~~~~~~ 269 (340)
T 1got_B 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL--MTYSHDNI 269 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--EEECCTTC
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE--EEEccCCc
Confidence 97 345666665 5678999998876554443221112344456777666 33 4455566643 2221 1111111
Q ss_pred --CCcEEEEe--CCEEEEEeC-CeEEEEEccCCCceeEEEe
Q 003405 238 --APIAVIIQ--KPYAIALLP-RRVEVRSLRVPYALIQTIV 273 (823)
Q Consensus 238 --~P~~v~~~--~PYll~~~~-~~ieV~~l~~~~~lvQ~i~ 273 (823)
....+.+. ..++++-.. +.|.|+++. ++..++++.
T Consensus 270 ~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~-~~~~~~~~~ 309 (340)
T 1got_B 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDAL-KADRAGVLA 309 (340)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEEEE
T ss_pred ccceEEEEECCCCCEEEEECCCCeEEEEEcc-cCcEeeEee
Confidence 12334443 356766665 579999986 466666664
No 70
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.79 E-value=0.0018 Score=82.30 Aligned_cols=233 Identities=15% Similarity=0.077 Sum_probs=144.6
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe
Q 003405 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 17 ~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
..|+|++.. ++.+++|+.+|.+.+|++.... ....+.+ +..+|..+...|..+.+++.+
T Consensus 962 ~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~------------------~~~~~~~-h~~~v~~l~~s~dg~~l~s~~ 1022 (1249)
T 3sfz_A 962 AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR------------------VFSSGVG-HKKAVRHIQFTADGKTLISSS 1022 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCEEEETTTTS------------------CEEECCC-CSSCCCCEEECSSSSCEEEEC
T ss_pred CcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc------------------eeeeccc-CCCceEEEEECCCCCEEEEEc
Confidence 457766654 5799999999999999976422 1222222 367899999999988888887
Q ss_pred C-c-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEeeeec-CCCCceEEEec--CCe
Q 003405 95 E-S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFG-VPDTVKSMSWC--GEN 169 (823)
Q Consensus 95 d-~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kei~-~~~~~~~l~~~--~~~ 169 (823)
+ + |.+|++.+-+..........+..+++.++...++.+..+.+.+|....++.. +.+. -.+.+.+++|. |..
T Consensus 1023 ~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~---~~~~~~~~~v~~~~~s~d~~~ 1099 (1249)
T 3sfz_A 1023 EDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIE---RDFTCHQGTVLSCAISSDATK 1099 (1249)
T ss_dssp SSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCC---EEEECCSSCCCCEEECSSSSS
T ss_pred CCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCcee---EEEcccCCcEEEEEECCCCCE
Confidence 5 4 9999997765443334455778888887554445556777888887644322 2222 24678899997 445
Q ss_pred EEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEEE-e-CCeEEEEcC-CCccccCC-c-------eeecC
Q 003405 170 ICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLG-K-ENIGVFVDQ-NGKLLQAD-R-------ICWSE 237 (823)
Q Consensus 170 i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL~-~-~~~gvfv~~-~G~~~~~~-~-------i~w~~ 237 (823)
++.|.. ....++|+.+++....+......-..+...+++.+|++ . |+...+.+. +|+..+.. + ....+
T Consensus 1100 l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1179 (1249)
T 3sfz_A 1100 FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGG 1179 (1249)
T ss_dssp CEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCS
T ss_pred EEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCc
Confidence 666665 56788999887654433322111123445577777773 3 344445554 45433110 0 12234
Q ss_pred CCcEEEEe--CCEEEEEeCCeEEEEEccCCCceeEEEe
Q 003405 238 APIAVIIQ--KPYAIALLPRRVEVRSLRVPYALIQTIV 273 (823)
Q Consensus 238 ~P~~v~~~--~PYll~~~~~~ieV~~l~~~~~lvQ~i~ 273 (823)
.+..+++. ..|+++.. +.+.|+++. ++..++++.
T Consensus 1180 ~v~~l~fs~dg~~l~s~~-g~v~vwd~~-~g~~~~~~~ 1215 (1249)
T 3sfz_A 1180 WVTDVCFSPDSKTLVSAG-GYLKWWNVA-TGDSSQTFY 1215 (1249)
T ss_dssp CCCEEEECTTSSCEEEES-SSEEEBCSS-SCBCCCCCC
T ss_pred eEEEEEECCCCCEEEECC-CeEEEEECC-CCceeeeee
Confidence 45566664 45666554 789999986 466666554
No 71
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=97.78 E-value=0.0065 Score=64.35 Aligned_cols=149 Identities=11% Similarity=0.079 Sum_probs=93.3
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC--c-EEEEeCC
Q 003405 27 LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE--S-IAFHRLP 103 (823)
Q Consensus 27 ~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d--~-l~~~~L~ 103 (823)
..++.++.+|.|.+|+.... +..+.+..-....+..+.+.|..+.+++.+. + |.+|++.
T Consensus 12 ~~~v~~~~~~~v~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~ 73 (349)
T 1jmx_B 12 EYMIVTNYPNNLHVVDVASD------------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 73 (349)
T ss_dssp EEEEEEETTTEEEEEETTTT------------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEEeCCCCeEEEEECCCC------------------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC
Confidence 34566788999999986531 1222332211125778888888776666653 3 9999987
Q ss_pred CCcccccccC-------CCCcEEEEeeCCCceEEEEE-------------cCeEEEEEEcCCCceeEeeeecCCCCceEE
Q 003405 104 NLETIAVLTK-------AKGANVYSWDDRRGFLCFAR-------------QKRVCIFRHDGGRGFVEVKDFGVPDTVKSM 163 (823)
Q Consensus 104 ~l~~~~~i~~-------~kg~~~fa~~~~~~~l~V~~-------------kkki~l~~~~~~~~f~~~kei~~~~~~~~l 163 (823)
+.+....+.. .+.+..++++++...++++. ...|.+|....++.....+.+..+..+.++
T Consensus 74 t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 153 (349)
T 1jmx_B 74 TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 153 (349)
T ss_dssp TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCE
T ss_pred CCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccce
Confidence 7654443322 12256778888877788775 366777776533212223345556678888
Q ss_pred EecC-CeEEEEEcCceEEEEcCCCCeeeccCC
Q 003405 164 SWCG-ENICIAIRKGYMILNATNGALSEVFPS 194 (823)
Q Consensus 164 ~~~~-~~i~v~~~~~y~lidl~~~~~~~L~~~ 194 (823)
+|.. +.+++ ......++|+.+++....++.
T Consensus 154 ~~s~dg~l~~-~~~~i~~~d~~~~~~~~~~~~ 184 (349)
T 1jmx_B 154 RAADDGSLYV-AGPDIYKMDVKTGKYTVALPL 184 (349)
T ss_dssp EECTTSCEEE-ESSSEEEECTTTCCEEEEECS
T ss_pred eECCCCcEEE-ccCcEEEEeCCCCceeccccc
Confidence 8872 34555 456688899998876655544
No 72
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.78 E-value=0.0031 Score=69.11 Aligned_cols=193 Identities=11% Similarity=0.081 Sum_probs=119.4
Q ss_pred CCcEEEEEEe---CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEeccc-Ccee
Q 003405 16 SPKIDAVASY---GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASR-QLLL 91 (823)
Q Consensus 16 ~~~I~ci~~~---~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~-~~Ll 91 (823)
...|+|++.. ++.|+.|+.||.|.+|++....... ........+.+ +..+|..|...|.. ++++
T Consensus 81 ~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~-----------~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~ 148 (402)
T 2aq5_A 81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL-----------PLREPVITLEG-HTKRVGIVAWHPTAQNVLL 148 (402)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS-----------CBCSCSEEEEC-CSSCEEEEEECSSBTTEEE
T ss_pred CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc-----------ccCCceEEecC-CCCeEEEEEECcCCCCEEE
Confidence 4579999874 4699999999999999987543210 00011223333 36789999999987 5677
Q ss_pred eEeC-c-EEEEeCCCCcccccc--c-CCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEeeee-cCC-C-CceE
Q 003405 92 SLSE-S-IAFHRLPNLETIAVL--T-KAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDF-GVP-D-TVKS 162 (823)
Q Consensus 92 ~l~d-~-l~~~~L~~l~~~~~i--~-~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kei-~~~-~-~~~~ 162 (823)
+.+. + |.+|++.+.+....+ . ....+++++++++...++++. .+.|.+|....+. ..+.+ ... + .+.+
T Consensus 149 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~ 225 (402)
T 2aq5_A 149 SAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT---VVAEKDRPHEGTRPVH 225 (402)
T ss_dssp EEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE---EEEEEECSSCSSSCCE
T ss_pred EEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc---eeeeeccCCCCCcceE
Confidence 7664 5 999999877655554 2 334688899988777777774 5678888776432 23333 222 2 3788
Q ss_pred EEecC--CeEEEEE----cCceEEEEcCCCCe-eeccCCCCCCCC-EEEEccCCeEEE-Ee--CCeEEEEcC
Q 003405 163 MSWCG--ENICIAI----RKGYMILNATNGAL-SEVFPSGRIGPP-LVVSLLSGELLL-GK--ENIGVFVDQ 223 (823)
Q Consensus 163 l~~~~--~~i~v~~----~~~y~lidl~~~~~-~~L~~~~~~~~p-~i~~~~~~EfLL-~~--~~~gvfv~~ 223 (823)
+.|.. ..++.|+ .....++|+.++.. ......+..... .+...+++.+++ +. |+...+++.
T Consensus 226 ~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~ 297 (402)
T 2aq5_A 226 AVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEI 297 (402)
T ss_dssp EEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEE
T ss_pred EEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEe
Confidence 99983 3566662 35678899987653 222222111112 233446666664 32 444455554
No 73
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.0032 Score=67.40 Aligned_cols=147 Identities=10% Similarity=0.054 Sum_probs=95.7
Q ss_pred CCCeeEEEEec--ccCceeeEeC-c-EEEEeCCCCcccccc--cCCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCc
Q 003405 75 KKPILSMEVLA--SRQLLLSLSE-S-IAFHRLPNLETIAVL--TKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRG 147 (823)
Q Consensus 75 k~~I~qI~~~~--~~~~Ll~l~d-~-l~~~~L~~l~~~~~i--~~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~ 147 (823)
..+|..+...| ..+.+++.+. + |.+|++.+.+..... .....+++++++++...++++ ..+.|.+|....+..
T Consensus 125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~ 204 (343)
T 3lrv_A 125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ 204 (343)
T ss_dssp SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS
T ss_pred CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC
Confidence 46899999999 7788887775 5 999999876543222 222357888888887777776 567788988875432
Q ss_pred eeEeeeecC--CCCceEEEec--CCeEEEEEcCceEEEEcCCCCeeeccCC-CCCCC----CEEEEccCCeEEEE--e-C
Q 003405 148 FVEVKDFGV--PDTVKSMSWC--GENICIAIRKGYMILNATNGALSEVFPS-GRIGP----PLVVSLLSGELLLG--K-E 215 (823)
Q Consensus 148 f~~~kei~~--~~~~~~l~~~--~~~i~v~~~~~y~lidl~~~~~~~L~~~-~~~~~----p~i~~~~~~EfLL~--~-~ 215 (823)
. ...+.. .++|.+++|. |..++.|......+.|+.+++....+.. ..... ..+..-+++.+|++ . +
T Consensus 205 ~--~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d 282 (343)
T 3lrv_A 205 A--SSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES 282 (343)
T ss_dssp C--CEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTT
T ss_pred C--ccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCC
Confidence 2 122333 5789999997 5578888888889999998754322221 00001 13555577888775 4 4
Q ss_pred CeEEEEcC
Q 003405 216 NIGVFVDQ 223 (823)
Q Consensus 216 ~~gvfv~~ 223 (823)
+...+++.
T Consensus 283 ~~i~v~~~ 290 (343)
T 3lrv_A 283 NSLTIYKF 290 (343)
T ss_dssp TEEEEEEE
T ss_pred CcEEEEEE
Confidence 54445554
No 74
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=97.76 E-value=0.018 Score=65.98 Aligned_cols=230 Identities=16% Similarity=0.195 Sum_probs=133.3
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
...|+|++.. |+.|+.|..||.|.+|+.+. ++.+.++++ ..+|..|...|...+|++.
T Consensus 16 ~~~V~~~a~spdg~~las~~~d~~v~iWd~~~-------------------~~~~~l~gh-~~~V~~l~fspdg~~las~ 75 (577)
T 2ymu_A 16 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-------------------QLLQTLTGH-SSSVWGVAFSPDGQTIASA 75 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECTTS-------------------CEEEEEECC-SSCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCC-------------------CEEEEEeCC-CCCEEEEEECCCCCEEEEE
Confidence 3579998875 46899999999999998432 123455543 6799999999998988888
Q ss_pred eC-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEEEcC-eEEEEEEcCCCceeEeeeecCCCCceEEEecC--
Q 003405 94 SE-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFARQK-RVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCG-- 167 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~~kk-ki~l~~~~~~~~f~~~kei~~~~~~~~l~~~~-- 167 (823)
++ + |++|++.. +.+..+. ....+..++++++...++.+... .+.++..... .. .........+.++.+..
T Consensus 76 ~~d~~i~vWd~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~-~~--~~~~~~~~~v~~~~~~~~~ 151 (577)
T 2ymu_A 76 SDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LL--QTLTGHSSSVWGVAFSPDG 151 (577)
T ss_dssp ETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCC-EE--EEECCCSSCEEEEEECTTS
T ss_pred eCCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccc-ee--eeccCCCCceeeeeeecCC
Confidence 76 4 99999743 2233332 23467888888887777777554 4444443321 11 11122345677777763
Q ss_pred CeEEEEEcCceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-E-eCCeEEEEcCCCccccCCceeec-CCCcEEEE
Q 003405 168 ENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-G-KENIGVFVDQNGKLLQADRICWS-EAPIAVII 244 (823)
Q Consensus 168 ~~i~v~~~~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~-~~~~gvfv~~~G~~~~~~~i~w~-~~P~~v~~ 244 (823)
..++.+.......+...++...............+...+++++++ + .+....+.+.+|+.. ..+.-. .....+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~--~~~~~~~~~v~~~~~ 229 (577)
T 2ymu_A 152 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL--QTLTGHSSSVRGVAF 229 (577)
T ss_dssp SCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEE--EEEECCSSCEEEEEE
T ss_pred ccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEE--EEEecCCCCEEEEEE
Confidence 456666665444443333332222211111111233446666665 3 345556677777643 223322 22344555
Q ss_pred e--CCEEEEEeC-CeEEEEEccCCCceeEEEe
Q 003405 245 Q--KPYAIALLP-RRVEVRSLRVPYALIQTIV 273 (823)
Q Consensus 245 ~--~PYll~~~~-~~ieV~~l~~~~~lvQ~i~ 273 (823)
. ..++++... +.+.+.+.. +..++++.
T Consensus 230 s~dg~~l~~~~~d~~i~~w~~~--~~~~~~~~ 259 (577)
T 2ymu_A 230 SPDGQTIASASDDKTVKLWNRN--GQLLQTLT 259 (577)
T ss_dssp CTTSSCEEEEETTSCEEEECTT--SCEEEEEC
T ss_pred CCCCCEEEEEeCCCEEEEEeCC--CCEEEEEe
Confidence 4 346666554 578888752 55666654
No 75
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.75 E-value=0.0092 Score=63.48 Aligned_cols=159 Identities=11% Similarity=0.075 Sum_probs=107.4
Q ss_pred CCCCcEEEEEEe------CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecC-CCCCCeeEEEEecc
Q 003405 14 NCSPKIDAVASY------GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISG-FSKKPILSMEVLAS 86 (823)
Q Consensus 14 ~~~~~I~ci~~~------~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~-~~k~~I~qI~~~~~ 86 (823)
.-...|.|++.. +..+++|+.+|.|.+|++.... .......+.. .+..+|..+...+.
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~~~~ 80 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQG---------------EIRLLQSYVDADADENFYTCAWTYD 80 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGG---------------CEEEEEEEECSCTTCCEEEEEEEEC
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCc---------------EEEeeeeccccCCCCcEEEEEeccC
Confidence 445689999988 4579999999999999976321 1111122211 13568999999988
Q ss_pred ----cCceeeEeC-c-EEEEeCCCCccccccc-CCCCcEEEEeeC-CCceEEEEE-cCeEEEEEEcCCCceeEeee-ecC
Q 003405 87 ----RQLLLSLSE-S-IAFHRLPNLETIAVLT-KAKGANVYSWDD-RRGFLCFAR-QKRVCIFRHDGGRGFVEVKD-FGV 156 (823)
Q Consensus 87 ----~~~Ll~l~d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~-~~~~l~V~~-kkki~l~~~~~~~~f~~~ke-i~~ 156 (823)
.+++++.+. + |.+|++.+.+.+..+. ....++++++++ +...++++. .+.|.+|....++.....+. -..
T Consensus 81 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 160 (366)
T 3k26_A 81 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 160 (366)
T ss_dssp TTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC
T ss_pred CCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccc
Confidence 345666654 5 9999998776655544 345788899988 555677665 56788888774422222221 134
Q ss_pred CCCceEEEec--CCeEEEEEc-CceEEEEcCCCC
Q 003405 157 PDTVKSMSWC--GENICIAIR-KGYMILNATNGA 187 (823)
Q Consensus 157 ~~~~~~l~~~--~~~i~v~~~-~~y~lidl~~~~ 187 (823)
.+.+.+++|. ++.++.|.. ....++|+.+++
T Consensus 161 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 194 (366)
T 3k26_A 161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKR 194 (366)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHH
T ss_pred cCceeEEEECCCCCEEEEecCCCCEEEEECCCCc
Confidence 5789999998 556777776 568899998764
No 76
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=97.72 E-value=0.002 Score=68.40 Aligned_cols=151 Identities=14% Similarity=0.227 Sum_probs=107.3
Q ss_pred CcEEEEEEeC--------CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccC
Q 003405 17 PKIDAVASYG--------LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQ 88 (823)
Q Consensus 17 ~~I~ci~~~~--------~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~ 88 (823)
..|.|+.... ..++.|+.||.|.+|++... .....+.+ +..+|..+...|..+
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~------------------~~~~~~~~-h~~~v~~~~~sp~g~ 209 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF------------------QIEADFIG-HNSNINTLTASPDGT 209 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETTTT------------------EEEEEECC-CCSCEEEEEECTTSS
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc------------------hhheeecC-CCCcEEEEEEcCCCC
Confidence 3567766543 37999999999999997531 22334443 367999999999988
Q ss_pred ceeeEeC-c-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEee-ee-----cCCCCc
Q 003405 89 LLLSLSE-S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVK-DF-----GVPDTV 160 (823)
Q Consensus 89 ~Ll~l~d-~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~k-ei-----~~~~~~ 160 (823)
++++-+. + |++|++.+.+.+..+.....+..++++++...++++....+.+|.+.........+ ++ .....+
T Consensus 210 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v 289 (319)
T 3frx_A 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289 (319)
T ss_dssp EEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcce
Confidence 8888875 5 99999988776666655567888999988878888899999999887432122222 11 113467
Q ss_pred eEEEec--CCeEEEEEcC-ceEEEEcCCC
Q 003405 161 KSMSWC--GENICIAIRK-GYMILNATNG 186 (823)
Q Consensus 161 ~~l~~~--~~~i~v~~~~-~y~lidl~~~ 186 (823)
.+++|. |..|+.|... ...+.|+.++
T Consensus 290 ~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 290 VSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 789997 5678878774 4677777654
No 77
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=97.71 E-value=0.058 Score=61.62 Aligned_cols=231 Identities=16% Similarity=0.190 Sum_probs=141.1
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
...|+|++.. ++.|+.|+.+|.+.+|+.+. ...+.+.++ ..+|..+...|..+.+++.
T Consensus 262 ~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-------------------~~~~~~~~h-~~~v~~~~~~~~~~~l~t~ 321 (577)
T 2ymu_A 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-------------------QLLQTLTGH-SSSVWGVAFSPDGQTIASA 321 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTS-------------------CEEEEECCC-SSCEEEEEECTTSSEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-------------------cEEEEEecC-CCCeEEEEECCCCCEEEEE
Confidence 4578888765 46899999999999998542 122333333 5789999999998888888
Q ss_pred eC-c-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEEc-CeEEEEEEcCCCceeEeeeecCCCCceEEEec--CC
Q 003405 94 SE-S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQ-KRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GE 168 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~k-kki~l~~~~~~~~f~~~kei~~~~~~~~l~~~--~~ 168 (823)
++ + +.+|++..-...........+..++++++...++++.+ +.+.+|... ++....++ .-...+++++|. |.
T Consensus 322 ~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~--~~~~~v~~~~~s~dg~ 398 (577)
T 2ymu_A 322 SDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT--GHSSSVRGVAFSPDGQ 398 (577)
T ss_dssp ETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEE--CCSSCEEEEEECTTSS
T ss_pred eCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEec--CCCCCeEEEEECCCCC
Confidence 76 4 99999865332211123356788888888777887755 557777643 22222221 224678999997 45
Q ss_pred eEEEEEcC-ceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-Ee-CCeEEEEcCCCccccCCceee-cCCCcEEEE
Q 003405 169 NICIAIRK-GYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-GK-ENIGVFVDQNGKLLQADRICW-SEAPIAVII 244 (823)
Q Consensus 169 ~i~v~~~~-~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~~-~~~gvfv~~~G~~~~~~~i~w-~~~P~~v~~ 244 (823)
.++.|... ...++|.+......+..... ....+...+++.+|+ +. |....+.+.+|+..+ .+.- ......+++
T Consensus 399 ~l~~~~~d~~v~~~~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~--~~~~~~~~v~~~~~ 475 (577)
T 2ymu_A 399 TIASASDDKTVKLWNRNGQLLQTLTGHSS-SVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQ--TLTGHSSSVRGVAF 475 (577)
T ss_dssp CEEEEETTSEEEEECTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTSCEEE--EEECCSSCEEEEEE
T ss_pred EEEEEeCCCEEEEEeCCCCEEEEecCCCC-CeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEE--EEcCCCCCEEEEEE
Confidence 68888774 46777864433333322211 111233446777766 43 455666787776431 2222 222344555
Q ss_pred e--CCEEEEEeC-CeEEEEEccCCCceeEEEee
Q 003405 245 Q--KPYAIALLP-RRVEVRSLRVPYALIQTIVL 274 (823)
Q Consensus 245 ~--~PYll~~~~-~~ieV~~l~~~~~lvQ~i~l 274 (823)
. ..+|++... +.|.|++. ++..++++.-
T Consensus 476 spd~~~las~~~d~~i~iw~~--~~~~~~~~~~ 506 (577)
T 2ymu_A 476 SPDGQTIASASDDKTVKLWNR--NGQLLQTLTG 506 (577)
T ss_dssp CTTSCEEEEEETTSEEEEEET--TSCEEEEEEC
T ss_pred cCCCCEEEEEeCCCEEEEEcC--CCCEEEEEeC
Confidence 3 346666654 57899986 3677777754
No 78
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.0071 Score=64.71 Aligned_cols=191 Identities=16% Similarity=0.179 Sum_probs=119.1
Q ss_pred CCCcEEEEEEe----CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecc--cC
Q 003405 15 CSPKIDAVASY----GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS--RQ 88 (823)
Q Consensus 15 ~~~~I~ci~~~----~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~--~~ 88 (823)
-...|+|++.. ++.|+.|+.||.|.+|++.... ......+.. +..+|..+...|. .+
T Consensus 54 h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----------------~~~~~~~~~-~~~~v~~~~~~~~~~~~ 116 (379)
T 3jrp_A 54 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR----------------WSQIAVHAV-HSASVNSVQWAPHEYGP 116 (379)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE----------------EEEEEEECC-CSSCEEEEEECCGGGCS
T ss_pred CCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc----------------eeEeeeecC-CCcceEEEEeCCCCCCC
Confidence 34579999875 6899999999999999976421 112223332 3678999999998 67
Q ss_pred ceeeEeC-c-EEEEeCCCCcccc--c-ccCCCCcEEEEeeCC-------------CceEEEE-EcCeEEEEEEcCCCc-e
Q 003405 89 LLLSLSE-S-IAFHRLPNLETIA--V-LTKAKGANVYSWDDR-------------RGFLCFA-RQKRVCIFRHDGGRG-F 148 (823)
Q Consensus 89 ~Ll~l~d-~-l~~~~L~~l~~~~--~-i~~~kg~~~fa~~~~-------------~~~l~V~-~kkki~l~~~~~~~~-f 148 (823)
.+++.+. + |.+|++.+..... . ......++++++++. ...++++ ..+.|.+|....+.. +
T Consensus 117 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 196 (379)
T 3jrp_A 117 LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 196 (379)
T ss_dssp EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE
T ss_pred EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce
Confidence 7777765 4 9999997653221 1 123456788888773 4456666 456788998874322 2
Q ss_pred eEeeeecC-CCCceEEEecC-----CeEEEEEc-CceEEEEcCCCC---eeeccCCCCCCCCE--EEEccCCeEEE-E-e
Q 003405 149 VEVKDFGV-PDTVKSMSWCG-----ENICIAIR-KGYMILNATNGA---LSEVFPSGRIGPPL--VVSLLSGELLL-G-K 214 (823)
Q Consensus 149 ~~~kei~~-~~~~~~l~~~~-----~~i~v~~~-~~y~lidl~~~~---~~~L~~~~~~~~p~--i~~~~~~EfLL-~-~ 214 (823)
.....+.. ...+.+++|.. +.++.|.. ....++|+.++. ...+........++ +...+++.+|+ + .
T Consensus 197 ~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 197 VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 276 (379)
T ss_dssp EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES
T ss_pred eeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC
Confidence 33333332 46889999983 34666665 457889998874 23333322112232 33446777666 3 3
Q ss_pred CCeEEEEc
Q 003405 215 ENIGVFVD 222 (823)
Q Consensus 215 ~~~gvfv~ 222 (823)
|+...+.+
T Consensus 277 dg~i~iw~ 284 (379)
T 3jrp_A 277 DNKVTLWK 284 (379)
T ss_dssp SSSEEEEE
T ss_pred CCcEEEEe
Confidence 44444444
No 79
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.69 E-value=0.0028 Score=67.39 Aligned_cols=152 Identities=10% Similarity=0.131 Sum_probs=98.5
Q ss_pred CCcEEEEEEe-----CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEe------
Q 003405 16 SPKIDAVASY-----GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVL------ 84 (823)
Q Consensus 16 ~~~I~ci~~~-----~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~------ 84 (823)
+..|+|++.. ++.|+.|+.+|.|.+|++..... ....+.+ +..+|..+...
T Consensus 65 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----------------~~~~~~~-~~~~v~~~~~~~~~~~s 126 (357)
T 3i2n_A 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM-----------------PVYSVKG-HKEIINAIDGIGGLGIG 126 (357)
T ss_dssp SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS-----------------CSEEECC-CSSCEEEEEEESGGGCC
T ss_pred cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc-----------------cEEEEEe-cccceEEEeeccccccC
Confidence 4578888765 36799999999999999764321 1223333 35789998765
Q ss_pred cccCceeeEeC-c-EEEEeCCCCc-ccccccC-----CCCcEEEE----eeCCCceEEEEEc-CeEEEEEEcCCCceeEe
Q 003405 85 ASRQLLLSLSE-S-IAFHRLPNLE-TIAVLTK-----AKGANVYS----WDDRRGFLCFARQ-KRVCIFRHDGGRGFVEV 151 (823)
Q Consensus 85 ~~~~~Ll~l~d-~-l~~~~L~~l~-~~~~i~~-----~kg~~~fa----~~~~~~~l~V~~k-kki~l~~~~~~~~f~~~ 151 (823)
+..+.+++.+. + |.+|++.+-+ +...+.. ...+..++ ++++...++++.. +.|.+|....+. ..
T Consensus 127 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~ 203 (357)
T 3i2n_A 127 EGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA---LR 203 (357)
T ss_dssp -CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE---EE
T ss_pred CCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc---ee
Confidence 34567777665 4 9999997654 3333322 22566666 3455556777755 678888776432 23
Q ss_pred eeecCCCCceEEEec-----CCeEEEEEcC-ceEEEEcCCCCe
Q 003405 152 KDFGVPDTVKSMSWC-----GENICIAIRK-GYMILNATNGAL 188 (823)
Q Consensus 152 kei~~~~~~~~l~~~-----~~~i~v~~~~-~y~lidl~~~~~ 188 (823)
.....++.+.+++|. ++.+++|... ...++|+.+++.
T Consensus 204 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 246 (357)
T 3i2n_A 204 WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP 246 (357)
T ss_dssp EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET
T ss_pred eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc
Confidence 334557889999996 4567778764 567889887643
No 80
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.68 E-value=0.0087 Score=68.98 Aligned_cols=238 Identities=13% Similarity=0.086 Sum_probs=147.5
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCC-eeEEEEec--ccCce
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKP-ILSMEVLA--SRQLL 90 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~-I~qI~~~~--~~~~L 90 (823)
+..|+|++.. ++.|++|+ +|.+.+|++..... .......+.+. ..+ |..+...| ..++|
T Consensus 18 ~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~--------------~~~~~~~~~~h-~~~~v~~~~~sp~~~~~~l 81 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS--------------KVPPVVQFTGH-GSSVVTTVKFSPIKGSQYL 81 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC--------------SSCSEEEECTT-TTSCEEEEEECSSTTCCEE
T ss_pred cCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC--------------ccccceEEecC-CCceEEEEEECcCCCCCEE
Confidence 4568776665 46888888 88999999773211 11123344443 567 99999999 88888
Q ss_pred eeEeC-c-EEEEeCCCC--------ccccccc-CCCCcEEEEeeCCCceEEEEEcCe---EEEEEEcCCCceeEeeee-c
Q 003405 91 LSLSE-S-IAFHRLPNL--------ETIAVLT-KAKGANVYSWDDRRGFLCFARQKR---VCIFRHDGGRGFVEVKDF-G 155 (823)
Q Consensus 91 l~l~d-~-l~~~~L~~l--------~~~~~i~-~~kg~~~fa~~~~~~~l~V~~kkk---i~l~~~~~~~~f~~~kei-~ 155 (823)
++.+. + |.+|++.+- +....+. ....++.++++++...++++...+ ..++-|+.++. ...+ .
T Consensus 82 ~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~---~~~~~~ 158 (615)
T 1pgu_A 82 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS---LGEVSG 158 (615)
T ss_dssp EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE---EEECCS
T ss_pred EEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCc---ceeeec
Confidence 88775 5 999998532 2222222 235688888888877777776543 56777764322 2222 2
Q ss_pred CCCCceEEEecCC---eEEEEEc-CceEEEEcCCCCeeeccCCCCC-CCC--EEEEccC-CeEEE-E-eCCeEEEEcC-C
Q 003405 156 VPDTVKSMSWCGE---NICIAIR-KGYMILNATNGALSEVFPSGRI-GPP--LVVSLLS-GELLL-G-KENIGVFVDQ-N 224 (823)
Q Consensus 156 ~~~~~~~l~~~~~---~i~v~~~-~~y~lidl~~~~~~~L~~~~~~-~~p--~i~~~~~-~EfLL-~-~~~~gvfv~~-~ 224 (823)
-.+.+.+++|..+ .++.|.. ....++|+.+++....+..... ..+ .+...++ +++++ + .++...+.|. .
T Consensus 159 ~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 238 (615)
T 1pgu_A 159 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS 238 (615)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT
T ss_pred CCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence 3468899999843 5666666 5578899988765544443221 113 2444566 77766 3 3455556663 4
Q ss_pred CccccCCce-----eecCCCcEEEE-eCCEEEEEeC-CeEEEEEccCCCceeEEEeeC
Q 003405 225 GKLLQADRI-----CWSEAPIAVII-QKPYAIALLP-RRVEVRSLRVPYALIQTIVLQ 275 (823)
Q Consensus 225 G~~~~~~~i-----~w~~~P~~v~~-~~PYll~~~~-~~ieV~~l~~~~~lvQ~i~l~ 275 (823)
|+.. ..+ .-......+.+ ...++++... +.|.|+++. ++..++++...
T Consensus 239 ~~~~--~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~~~~ 293 (615)
T 1pgu_A 239 GEFL--KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT-TSKCVQKWTLD 293 (615)
T ss_dssp CCEE--EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT-TTEEEEEEECC
T ss_pred CCEe--EEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECC-CCcEEEEEcCC
Confidence 4432 122 12233345555 4567777765 689999996 47788887765
No 81
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.67 E-value=0.02 Score=60.66 Aligned_cols=240 Identities=12% Similarity=0.096 Sum_probs=142.6
Q ss_pred eCCEEEEEeC-------CCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC--
Q 003405 25 YGLKILLGCS-------DGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-- 95 (823)
Q Consensus 25 ~~~~L~vGT~-------~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d-- 95 (823)
.++.+|+++. +|.|.+|+.... +..+.+.. ...+..+.+.+..+.+++.+.
T Consensus 51 dg~~l~~~~~~~~~~~~~~~v~~~d~~~~------------------~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~ 110 (353)
T 3vgz_A 51 QENALWLATSQSRKLDKGGVVYRLDPVTL------------------EVTQAIHN--DLKPFGATINNTTQTLWFGNTVN 110 (353)
T ss_dssp TTTEEEEEECCCTTTEESEEEEEECTTTC------------------CEEEEEEE--SSCCCSEEEETTTTEEEEEETTT
T ss_pred CCCEEEEEcCCCcCCCCCccEEEEcCCCC------------------eEEEEEec--CCCcceEEECCCCCEEEEEecCC
Confidence 3579999985 467888875432 12222221 234677888888886666654
Q ss_pred c-EEEEeCCCCcccccccCCC----------CcEEEEeeCCCceEEEEE---cCeEEEEEEcCCCceeEeeeec-CCCCc
Q 003405 96 S-IAFHRLPNLETIAVLTKAK----------GANVYSWDDRRGFLCFAR---QKRVCIFRHDGGRGFVEVKDFG-VPDTV 160 (823)
Q Consensus 96 ~-l~~~~L~~l~~~~~i~~~k----------g~~~fa~~~~~~~l~V~~---kkki~l~~~~~~~~f~~~kei~-~~~~~ 160 (823)
+ |.+|++.+.+....+.... +...++++++...++++. ...|.+|.... .+..+.+. ....|
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~ 187 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN---IKLKTAIQNTGKMS 187 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT---TEEEEEECCCCTTC
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC---CceEEEecCCCCcc
Confidence 3 9999987765443332211 256788888877788775 34455555442 23344454 34458
Q ss_pred eEEEec--CCeEEEEEc-CceEEEEcCCCCeeeccCCCCC---CCCE-EEEccCCeEEE-Ee-C-CeEEEEcC-CCcccc
Q 003405 161 KSMSWC--GENICIAIR-KGYMILNATNGALSEVFPSGRI---GPPL-VVSLLSGELLL-GK-E-NIGVFVDQ-NGKLLQ 229 (823)
Q Consensus 161 ~~l~~~--~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~---~~p~-i~~~~~~EfLL-~~-~-~~gvfv~~-~G~~~~ 229 (823)
.+++|. |+.++++.. ....++|+.+++....++.+.. ..|. +...+++.++. +. + +....+|. .|+..
T Consensus 188 ~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~- 266 (353)
T 3vgz_A 188 TGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL- 266 (353)
T ss_dssp CCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE-
T ss_pred ceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-
Confidence 888886 567888876 4678899999887665554321 1232 33445666544 32 2 45555665 44432
Q ss_pred CCceeecCCCcEEEEe--CCEEEEEeC--CeEEEEEccCCCceeEEEeeCCcc-c--ccccCCeEEEec
Q 003405 230 ADRICWSEAPIAVIIQ--KPYAIALLP--RRVEVRSLRVPYALIQTIVLQNVR-H--LIPSSNAVVVAL 291 (823)
Q Consensus 230 ~~~i~w~~~P~~v~~~--~PYll~~~~--~~ieV~~l~~~~~lvQ~i~l~~~~-~--l~~~~~~v~v~s 291 (823)
..+.. ..|..+++. ..++++... +.|.++++. ++.+++++...... . +...++.+|++.
T Consensus 267 -~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 267 -AKVAA-PESLAVLFNPARNEAYVTHRQAGKVSVIDAK-SYKVVKTFDTPTHPNSLALSADGKTLYVSV 332 (353)
T ss_dssp -EEEEC-SSCCCEEEETTTTEEEEEETTTTEEEEEETT-TTEEEEEEECCSEEEEEEECTTSCEEEEEE
T ss_pred -EEEEc-CCCceEEECCCCCEEEEEECCCCeEEEEECC-CCeEEEEEecCCCCCeEEEcCCCCEEEEEE
Confidence 23333 235566664 346666663 689999986 57888888765421 1 223455566654
No 82
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=97.64 E-value=0.004 Score=68.79 Aligned_cols=208 Identities=12% Similarity=0.126 Sum_probs=119.2
Q ss_pred CcEEEEEEeC----CEEEEEeCCCcEEEEcCCCCCCC---------CCCCCcc---cccc-----cccce----eeeeec
Q 003405 17 PKIDAVASYG----LKILLGCSDGSLKIYSPGSSESD---------RSPPSDY---QSLR-----KESYE----LERTIS 71 (823)
Q Consensus 17 ~~I~ci~~~~----~~L~vGT~~G~l~~y~~~~~~~~---------~~~~~d~---~~l~-----~~~~~----l~~~~~ 71 (823)
..|+|++... ..++.|+.||.|.+|++...... .....++ ..+. ...+. ..+.+.
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 4588887764 47999999999999997642110 0000000 0000 00000 011222
Q ss_pred CCCCCCeeEEEEecccCceeeEeCc-EEEEeCCCCc-ccc-------cc-cCCCCcEEEEeeCCC-ceEEEE-EcCeEEE
Q 003405 72 GFSKKPILSMEVLASRQLLLSLSES-IAFHRLPNLE-TIA-------VL-TKAKGANVYSWDDRR-GFLCFA-RQKRVCI 139 (823)
Q Consensus 72 ~~~k~~I~qI~~~~~~~~Ll~l~d~-l~~~~L~~l~-~~~-------~i-~~~kg~~~fa~~~~~-~~l~V~-~kkki~l 139 (823)
.-+..+|..+...|..+++++-.|+ |.+|++..-. ... .+ .....+++++++++. ..++++ ..+.|.+
T Consensus 174 ~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 253 (447)
T 3dw8_B 174 NAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRL 253 (447)
T ss_dssp SCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred cCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEE
Confidence 2246789999999998888876565 9999997321 111 11 223458888888876 566666 4566888
Q ss_pred EEEcCCCce-eEeeeecCC-------------CCceEEEec--CCeEEEEEcCceEEEEcCC-CCeeeccCCCCCCCC--
Q 003405 140 FRHDGGRGF-VEVKDFGVP-------------DTVKSMSWC--GENICIAIRKGYMILNATN-GALSEVFPSGRIGPP-- 200 (823)
Q Consensus 140 ~~~~~~~~f-~~~kei~~~-------------~~~~~l~~~--~~~i~v~~~~~y~lidl~~-~~~~~L~~~~~~~~p-- 200 (823)
|....+... ...+.+..+ ..+.+++|. |..++.|......++|+.+ ++....+........
T Consensus 254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l 333 (447)
T 3dw8_B 254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKL 333 (447)
T ss_dssp EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTH
T ss_pred EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccc
Confidence 887644321 012223222 278999998 5578888777788999986 544333322110000
Q ss_pred -------------EEEEccCCeEEEE--eCCeEEEEcCC
Q 003405 201 -------------LVVSLLSGELLLG--KENIGVFVDQN 224 (823)
Q Consensus 201 -------------~i~~~~~~EfLL~--~~~~gvfv~~~ 224 (823)
.+...+++.+|++ .|+...+.|..
T Consensus 334 ~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 334 CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp HHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred cccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence 1455577777663 34555566654
No 83
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=97.63 E-value=0.0068 Score=65.01 Aligned_cols=194 Identities=13% Similarity=0.135 Sum_probs=118.9
Q ss_pred CCcccccccccCCCC-cEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCee
Q 003405 3 HNAFDSLELISNCSP-KIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPIL 79 (823)
Q Consensus 3 ~~af~~~~l~~~~~~-~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~ 79 (823)
.+.+....-+..-+. .|.+++.. ++.|+.|+.||.|.+|++.... .........-+..+|.
T Consensus 2 ~~~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~----------------~~~~~~~~~~h~~~v~ 65 (345)
T 3fm0_A 2 KDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDS----------------WICKSVLSEGHQRTVR 65 (345)
T ss_dssp --CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTE----------------EEEEEEECSSCSSCEE
T ss_pred CccEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCc----------------ceeeeeeccccCCcEE
Confidence 344444333333333 67777665 4689999999999999865321 1111111122467899
Q ss_pred EEEEecccCceeeEeC-c-EEEEeCCCC--ccccccc-CCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeee
Q 003405 80 SMEVLASRQLLLSLSE-S-IAFHRLPNL--ETIAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKD 153 (823)
Q Consensus 80 qI~~~~~~~~Ll~l~d-~-l~~~~L~~l--~~~~~i~-~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~ke 153 (823)
.+..-|..++|++-+. + +.+|++..- +....+. ....++.++++++...++.+ ..+.|.+|....+........
T Consensus 66 ~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 66 KVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE
Confidence 9999999888888875 4 999987543 2233332 23468888998877777776 456788998875433333333
Q ss_pred ec-CCCCceEEEec--CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCE--EEEccCCeEEE
Q 003405 154 FG-VPDTVKSMSWC--GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPL--VVSLLSGELLL 212 (823)
Q Consensus 154 i~-~~~~~~~l~~~--~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~--i~~~~~~EfLL 212 (823)
+. -.+.+.+++|. ++.++.|.. ....++|+.++.............++ +...+++.+|+
T Consensus 146 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~ 210 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA 210 (345)
T ss_dssp ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEE
Confidence 32 24578999997 456777776 55788888876533222111111222 33446777776
No 84
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.61 E-value=0.007 Score=65.51 Aligned_cols=185 Identities=15% Similarity=0.084 Sum_probs=108.8
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccC-ceeeE
Q 003405 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQ-LLLSL 93 (823)
Q Consensus 17 ~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~-~Ll~l 93 (823)
..|.|++.. ++.|+.|+.+|.|.+|++... ....+.. +..+|..+...|..+ ++++.
T Consensus 164 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------------------~~~~~~~-h~~~v~~~~~~~~~~~~l~s~ 223 (383)
T 3ei3_B 164 YWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH-------------------EIFKEKL-HKAKVTHAEFNPRCDWLMATS 223 (383)
T ss_dssp CCEEEEEEETTTTEEEEEETTSEEEEEETTSC-------------------EEEEEEC-SSSCEEEEEECSSCTTEEEEE
T ss_pred CCeEEEEECCCCCEEEEECCCCCEEEEECCCC-------------------EEEEecc-CCCcEEEEEECCCCCCEEEEE
Confidence 458888766 579999999999999997421 1223333 367899999999887 66666
Q ss_pred eC-c-EEEEeCCCC----cccccccCCCCcEEEEeeC-CCceEEEEE-cCeEEEEEEcCCCceeEeee-----ecCCCCc
Q 003405 94 SE-S-IAFHRLPNL----ETIAVLTKAKGANVYSWDD-RRGFLCFAR-QKRVCIFRHDGGRGFVEVKD-----FGVPDTV 160 (823)
Q Consensus 94 ~d-~-l~~~~L~~l----~~~~~i~~~kg~~~fa~~~-~~~~l~V~~-kkki~l~~~~~~~~f~~~ke-----i~~~~~~ 160 (823)
+. + |++|++.+. ...........++.+++++ +...++++. .+.|.+|..........+.. ..-...+
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 303 (383)
T 3ei3_B 224 SVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPI 303 (383)
T ss_dssp ETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCC
T ss_pred eCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccce
Confidence 64 4 999999763 2333334456788899988 666677664 57888888764322222211 0111222
Q ss_pred eEEEec--CCeEEEEE----------cCceEEEEcCCCCeeeccCC-C-CCCCCEEEEccCCeEEE-EeCCeEEEEc
Q 003405 161 KSMSWC--GENICIAI----------RKGYMILNATNGALSEVFPS-G-RIGPPLVVSLLSGELLL-GKENIGVFVD 222 (823)
Q Consensus 161 ~~l~~~--~~~i~v~~----------~~~y~lidl~~~~~~~L~~~-~-~~~~p~i~~~~~~EfLL-~~~~~gvfv~ 222 (823)
. ..|. ++.++++. .....++|+.+++....+.. + .....++...+++.+|+ +.|+...+.+
T Consensus 304 ~-~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~ 379 (383)
T 3ei3_B 304 K-ATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWN 379 (383)
T ss_dssp C-CEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEE
T ss_pred E-EeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEe
Confidence 2 3554 34555553 34567778777665333321 1 11112234445555555 3333444444
No 85
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.0025 Score=69.67 Aligned_cols=198 Identities=13% Similarity=0.134 Sum_probs=123.3
Q ss_pred CCcEEEEEEe---CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecc-cCcee
Q 003405 16 SPKIDAVASY---GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS-RQLLL 91 (823)
Q Consensus 16 ~~~I~ci~~~---~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~-~~~Ll 91 (823)
...|+|++.. ++.|+.|+.||.|.+|++......... ...+.+ .... -+..+|..+...|. .++++
T Consensus 113 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--------~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~l~ 182 (416)
T 2pm9_A 113 SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN--------YTPLTP-GQSM-SSVDEVISLAWNQSLAHVFA 182 (416)
T ss_dssp SSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT--------CCCBCC-CCSC-CSSCCCCEEEECSSCTTEEE
T ss_pred ccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc--------cccccc-cccc-CCCCCeeEEEeCCCCCcEEE
Confidence 4578888876 568999999999999998754311000 001111 1111 23568999999998 45566
Q ss_pred eEeC-c-EEEEeCCCCcccccccC-------CCCcEEEEeeCCC-ceEEEEEcC----eEEEEEEcCCCceeEeeeec--
Q 003405 92 SLSE-S-IAFHRLPNLETIAVLTK-------AKGANVYSWDDRR-GFLCFARQK----RVCIFRHDGGRGFVEVKDFG-- 155 (823)
Q Consensus 92 ~l~d-~-l~~~~L~~l~~~~~i~~-------~kg~~~fa~~~~~-~~l~V~~kk----ki~l~~~~~~~~f~~~kei~-- 155 (823)
+.+. + |.+|++.+.+....+.. ...++.++++++. ..++++... .|.+|....+.. ..+.+.
T Consensus 183 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~--~~~~~~~~ 260 (416)
T 2pm9_A 183 SAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT--PLQTLNQG 260 (416)
T ss_dssp EESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS--CSBCCCSC
T ss_pred EEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC--CcEEeecC
Confidence 5554 4 99999987665544433 4568888888875 356776554 788888774321 122332
Q ss_pred CCCCceEEEec---CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCC-eEEEE--eCCeEEEEcCCC
Q 003405 156 VPDTVKSMSWC---GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSG-ELLLG--KENIGVFVDQNG 225 (823)
Q Consensus 156 ~~~~~~~l~~~---~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~-EfLL~--~~~~gvfv~~~G 225 (823)
-...+.+++|. ++.++.|.. ....++|+.+++....+.........+...+++ .++++ .|+...+.+...
T Consensus 261 ~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 35689999995 456777776 457889999887654443322222235555666 66663 345555666543
No 86
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.60 E-value=0.027 Score=64.75 Aligned_cols=239 Identities=10% Similarity=0.079 Sum_probs=141.1
Q ss_pred CCc-EEEEEEeC----CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCce
Q 003405 16 SPK-IDAVASYG----LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLL 90 (823)
Q Consensus 16 ~~~-I~ci~~~~----~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~L 90 (823)
+.. |+|++... +.|+.|+.||.|.+|++...... +.........+.. +..+|..+...|....+
T Consensus 63 ~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~----------~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l 131 (615)
T 1pgu_A 63 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES----------NSVEVNVKSEFQV-LAGPISDISWDFEGRRL 131 (615)
T ss_dssp TTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG----------TEEEEEEEEEEEC-CSSCEEEEEECTTSSEE
T ss_pred CCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccc----------ccccccccchhhc-ccccEEEEEEeCCCCEE
Confidence 456 99988754 68999999999999997421000 0001122333333 36789999999999988
Q ss_pred eeEeCc----EEEEeCCCCcccccc-cCCCCcEEEEeeCCCc-eEEEE-EcCeEEEEEEcCCCceeEeeeecC-CC---C
Q 003405 91 LSLSES----IAFHRLPNLETIAVL-TKAKGANVYSWDDRRG-FLCFA-RQKRVCIFRHDGGRGFVEVKDFGV-PD---T 159 (823)
Q Consensus 91 l~l~d~----l~~~~L~~l~~~~~i-~~~kg~~~fa~~~~~~-~l~V~-~kkki~l~~~~~~~~f~~~kei~~-~~---~ 159 (823)
++.+++ ..++..+.-+....+ .....++.++++++.. .++.+ ..+.|.+|.... .+..+.+.. .+ .
T Consensus 132 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~---~~~~~~~~~~~~~~~~ 208 (615)
T 1pgu_A 132 CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP---FKFSASDRTHHKQGSF 208 (615)
T ss_dssp EEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT---BEEEEEECSSSCTTCC
T ss_pred EEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC---cceeeeecccCCCCce
Confidence 888752 333333332222222 2234677888887765 56666 446777777653 233344432 34 7
Q ss_pred ceEEEec---CCeEEEEEc-CceEEEEcCCCCeeeccCC---CCCCCCE--EEEccCCeEEE-Ee-CCeEEEEcCC-Ccc
Q 003405 160 VKSMSWC---GENICIAIR-KGYMILNATNGALSEVFPS---GRIGPPL--VVSLLSGELLL-GK-ENIGVFVDQN-GKL 227 (823)
Q Consensus 160 ~~~l~~~---~~~i~v~~~-~~y~lidl~~~~~~~L~~~---~~~~~p~--i~~~~~~EfLL-~~-~~~gvfv~~~-G~~ 227 (823)
+.+++|. ++.++.|.. ....++|+.+++....+.. +.. .++ +... ++.+++ +. ++...+.+.. |+.
T Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ-GGIFALSWL-DSQKFATVGADATIRVWDVTTSKC 286 (615)
T ss_dssp EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCC-SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccC-CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE
Confidence 8999997 346777776 5678999999886665521 211 222 3334 666666 43 4555566654 443
Q ss_pred ccCCceeec-----CCCcEEEE-eCCEEEEEeC-CeEEEEEccCCCceeEEEe
Q 003405 228 LQADRICWS-----EAPIAVII-QKPYAIALLP-RRVEVRSLRVPYALIQTIV 273 (823)
Q Consensus 228 ~~~~~i~w~-----~~P~~v~~-~~PYll~~~~-~~ieV~~l~~~~~lvQ~i~ 273 (823)
. ..+... ..+..+.+ ...++++... +.+.++++. ++..++++.
T Consensus 287 ~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~-~~~~~~~~~ 336 (615)
T 1pgu_A 287 V--QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG-HDEVLKTIS 336 (615)
T ss_dssp E--EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETT-EEEEEEEEC
T ss_pred E--EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECC-CCcEEEEEe
Confidence 2 233332 22333443 5567776665 678888885 355555543
No 87
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.59 E-value=0.022 Score=60.63 Aligned_cols=231 Identities=9% Similarity=-0.034 Sum_probs=140.3
Q ss_pred CcEEEEEEeCCEEEEEeC-CCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe-
Q 003405 17 PKIDAVASYGLKILLGCS-DGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS- 94 (823)
Q Consensus 17 ~~I~ci~~~~~~L~vGT~-~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~- 94 (823)
....+++.+++++|+++. +|.|.+++... .+..+++.. ......|.+.+.. .+.+..
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t------------------~~~~~~i~~--~~~p~~i~~~~~g-~lyv~~~ 102 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINT------------------FKEVGRITG--FTSPRYIHFLSDE-KAYVTQI 102 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTT------------------CCEEEEEEC--CSSEEEEEEEETT-EEEEEEB
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcc------------------cEEEEEcCC--CCCCcEEEEeCCC-eEEEEEC
Confidence 346778889999999988 58899887542 123333332 2457778776765 555544
Q ss_pred -Cc-EEEEeCCCCcccccccCCC------CcEEEEeeCCCceEEEEE---cCeEEEEEEcCCCceeEeeeecCCCCceEE
Q 003405 95 -ES-IAFHRLPNLETIAVLTKAK------GANVYSWDDRRGFLCFAR---QKRVCIFRHDGGRGFVEVKDFGVPDTVKSM 163 (823)
Q Consensus 95 -d~-l~~~~L~~l~~~~~i~~~k------g~~~fa~~~~~~~l~V~~---kkki~l~~~~~~~~f~~~kei~~~~~~~~l 163 (823)
++ |.++++.+.+....++... ....+++ +.+.+.|+. .+.|.++....+ +..+.+.....|.++
T Consensus 103 ~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~---~~~~~i~~g~~p~~i 177 (328)
T 3dsm_A 103 WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETD---KVVDELTIGIQPTSL 177 (328)
T ss_dssp SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTT---EEEEEEECSSCBCCC
T ss_pred CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCC---eEEEEEEcCCCccce
Confidence 33 9999988766443333222 3344555 345677774 456666665532 344556667778888
Q ss_pred EecC-CeEEEEEcC------------ceEEEEcCCCCeeeccCCCCCCCCEEEEc-cCCeEEEEeCCeEEEEcCC-Cccc
Q 003405 164 SWCG-ENICIAIRK------------GYMILNATNGALSEVFPSGRIGPPLVVSL-LSGELLLGKENIGVFVDQN-GKLL 228 (823)
Q Consensus 164 ~~~~-~~i~v~~~~------------~y~lidl~~~~~~~L~~~~~~~~p~i~~~-~~~EfLL~~~~~gvfv~~~-G~~~ 228 (823)
.+.. +.+++++.. ...++|..+++...-+..+....|.-+.+ +++..|.+.+.....+|.. |+..
T Consensus 178 ~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 178 VMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVP 257 (328)
T ss_dssp EECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESSSEEEEETTCSSCC
T ss_pred EEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEccEEEEEECCCCcee
Confidence 8874 567777763 47889999887664444321124655444 4667766555544456654 3432
Q ss_pred cCCceee-cCCCcEEEEe--CCEEEEEe------CCeEEEEEccCCCceeEEEeeC
Q 003405 229 QADRICW-SEAPIAVIIQ--KPYAIALL------PRRVEVRSLRVPYALIQTIVLQ 275 (823)
Q Consensus 229 ~~~~i~w-~~~P~~v~~~--~PYll~~~------~~~ieV~~l~~~~~lvQ~i~l~ 275 (823)
....+.. ...|..+++. .-+|++.. .+.|.+++. + +.+++++...
T Consensus 258 ~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~-~-g~~~~~i~~G 311 (328)
T 3dsm_A 258 VRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP-Q-GKLIDEFYVG 311 (328)
T ss_dssp SSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT-T-CCEEEEEEEE
T ss_pred eeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC-C-CCEEEEEEec
Confidence 1112222 3568888885 45777665 356888876 3 7888888653
No 88
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=97.58 E-value=0.0071 Score=67.09 Aligned_cols=162 Identities=10% Similarity=0.131 Sum_probs=100.7
Q ss_pred CCcEEEEEEeC---CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccC-cee
Q 003405 16 SPKIDAVASYG---LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQ-LLL 91 (823)
Q Consensus 16 ~~~I~ci~~~~---~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~-~Ll 91 (823)
+..|+|++... +.|+.|+.+|.|.+|++........+ .........+.+ +..+|..|...|... +|+
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~--------~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~ 198 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP--------SGECQPDLRLRG-HQKEGYGLSWNPNLNGYLL 198 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT--------TCCCCCSEEEEC-CSSCCCCEEECTTSTTEEE
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc--------cccCCCcEEecC-CCCCeEEEEeCCCCCCeEE
Confidence 35678887765 37899999999999998753221000 000112233333 367899999999877 666
Q ss_pred eEeC-c-EEEEeCCCCcc-------cccc-cCCCCcEEEEeeCCC-ceEEEE-EcCeEEEEEEcCCCceeEeeee-cCCC
Q 003405 92 SLSE-S-IAFHRLPNLET-------IAVL-TKAKGANVYSWDDRR-GFLCFA-RQKRVCIFRHDGGRGFVEVKDF-GVPD 158 (823)
Q Consensus 92 ~l~d-~-l~~~~L~~l~~-------~~~i-~~~kg~~~fa~~~~~-~~l~V~-~kkki~l~~~~~~~~f~~~kei-~~~~ 158 (823)
+.+. + |.+|++.+... .... .....++.+++++.. ..++++ ..+.|.+|.............+ .-..
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 6654 5 99999976221 1111 233467888888743 445555 5678888888743211222222 3356
Q ss_pred CceEEEec--CC-eEEEEEc-CceEEEEcCCC
Q 003405 159 TVKSMSWC--GE-NICIAIR-KGYMILNATNG 186 (823)
Q Consensus 159 ~~~~l~~~--~~-~i~v~~~-~~y~lidl~~~ 186 (823)
.|++++|. +. .++.|.. +...++|+.+.
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~ 310 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNL 310 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Confidence 89999998 33 4666666 56788999873
No 89
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.0055 Score=68.31 Aligned_cols=142 Identities=14% Similarity=0.029 Sum_probs=98.7
Q ss_pred CCcEEEEEEeCC-----EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCce
Q 003405 16 SPKIDAVASYGL-----KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLL 90 (823)
Q Consensus 16 ~~~I~ci~~~~~-----~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~L 90 (823)
...|+|++...+ .|+.|+.||.|.+|++.... ....+..-+..+|..+... ..+++
T Consensus 195 ~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~------------------~~~~~~~~h~~~v~~~~~s-d~~~l 255 (450)
T 2vdu_B 195 VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF------------------IVDKWLFGHKHFVSSICCG-KDYLL 255 (450)
T ss_dssp SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT------------------CEEEECCCCSSCEEEEEEC-STTEE
T ss_pred cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc------------------eeeeeecCCCCceEEEEEC-CCCEE
Confidence 357888876643 89999999999999976321 1222221235789999988 77788
Q ss_pred eeEeC-c-EEEEeCCCCccccccc--------------------------CCCCcEEEEeeCCCceEEEEE--cCeEEEE
Q 003405 91 LSLSE-S-IAFHRLPNLETIAVLT--------------------------KAKGANVYSWDDRRGFLCFAR--QKRVCIF 140 (823)
Q Consensus 91 l~l~d-~-l~~~~L~~l~~~~~i~--------------------------~~kg~~~fa~~~~~~~l~V~~--kkki~l~ 140 (823)
++.++ + |.+|++.+.+.+..+. ....+..++..++...++++. .+.|.+|
T Consensus 256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL 335 (450)
T ss_dssp EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 87775 4 9999997654332221 112466677777766777775 6789999
Q ss_pred EE--cCCCceeEeeeecCCCCceEEEecCCeEEEEEcC
Q 003405 141 RH--DGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRK 176 (823)
Q Consensus 141 ~~--~~~~~f~~~kei~~~~~~~~l~~~~~~i~v~~~~ 176 (823)
.+ ..+..+..++.+..++.|.+++|.++.++++..+
T Consensus 336 ~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~ 373 (450)
T 2vdu_B 336 EMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDN 373 (450)
T ss_dssp EECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECC
T ss_pred EeccCCCCceeeccEeccCCceEEEEecCCcEEEEEec
Confidence 99 3333456666677778999999998877777653
No 90
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.55 E-value=4.3e-05 Score=83.55 Aligned_cols=230 Identities=12% Similarity=0.119 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHhcCChhhHHhhhcC-CCcccHHHHHHHHHhcCcHHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCccc
Q 003405 506 ILDTALLQALLLTGQSSAALELLKG-LNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDE 584 (823)
Q Consensus 506 ~vDT~Ll~~y~~~~~~~~l~~ll~~-~n~c~~~~~~~~L~~~~~~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~ 584 (823)
.+=|-|--+|.+.++. ++.+-++. -..+++..+...+++.+.|.+|+.||.+...|+.|.....+-.... |+
T Consensus 264 GmFTELaILYsKY~Pe-KlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~A----w~-- 336 (624)
T 3lvg_A 264 GMFTELAILYSKFKPQ-KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDA----WK-- 336 (624)
T ss_dssp HHHHHHHHHHHSSCTT-HHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHH----CC--
T ss_pred HHHHHHHHHHHhcCHH-HHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhh----cc--
Confidence 5778899999999874 55555553 3467788889999999999999999999999999988776542211 11
Q ss_pred ccccCChHHHHHHhhcCCCCChhhHHHhhhhhhhcCcccccccccc--CCCChHHHHHHHhhcCc-hhHHHHHHHHhhcc
Q 003405 585 HTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLS--GNIPADLVNSYLKQYSP-SMQGRYLELMLAMN 661 (823)
Q Consensus 585 ~~~~~~~~~~i~yL~~L~~~~~~li~~y~~wll~~~p~~~~~if~~--~~l~~~~Vl~~L~~~~~-~~~~~YLE~li~~~ 661 (823)
+..-.+.+.+ ..+.+++++=..+-++..|..-.++++. ..++..+|+.++.+.+. .+...||+.+-.
T Consensus 337 ------h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~-- 406 (624)
T 3lvg_A 337 ------EGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN-- 406 (624)
T ss_dssp ------GGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCC--
T ss_pred ------HHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHH--
Confidence 1111223333 3477899999999999999988777775 67999999999998643 355668877632
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccchHHHHHHHHHhhhcCCCChHHHhccCCCCchhh---HHHHHh
Q 003405 662 ENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYE---ERAILL 738 (823)
Q Consensus 662 ~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kLl~fL~~s~~Yd~~~~L~~~~~~~l~~---e~~~Ll 738 (823)
.-...+-..|-.+|++.- +.+.|+.=++.-++||--.+..++..++|.+ --++||
T Consensus 407 --~N~~aVNeAln~L~IEEE--------------------Dy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LY 464 (624)
T 3lvg_A 407 --HNNKSVNESLNNLFITEE--------------------DYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLF 464 (624)
T ss_dssp --SCCHHHHHHHHHHHHHTT--------------------CCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHHhhhh--------------------hHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHH
Confidence 235678888999999851 3577888788889999999999999887554 568899
Q ss_pred hccccHHHHHHHHHHH-h-CCC--------chhHHHHHHHHhcCCC
Q 003405 739 GKMNQHELALSLYVHK-V-FLI--------NQPVFLLIRRMAMDIK 774 (823)
Q Consensus 739 ~klg~h~~AL~ilv~~-L-~D~--------~~a~~~~l~~~y~~~~ 774 (823)
.|-+++++|+.+.-.. | +|- +..+--.||++|.+.+
T Consensus 465 kkn~rw~qsi~l~KkDklykDAietAa~S~~~elaeeLL~yFv~~g 510 (624)
T 3lvg_A 465 KGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEE 510 (624)
T ss_dssp HTTCHHHHHSSCSSTTCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC
T ss_pred HhcccHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999999999886532 1 221 4456667777777654
No 91
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=97.54 E-value=0.0051 Score=64.92 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=106.1
Q ss_pred CCcEEEEEEeC----CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCcee
Q 003405 16 SPKIDAVASYG----LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLL 91 (823)
Q Consensus 16 ~~~I~ci~~~~----~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll 91 (823)
...|++++... ..++.|..||.|.+|++... .....+.+ +..+|..|...|..++++
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~------------------~~~~~~~~-h~~~v~~~~~s~~~~~l~ 231 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC------------------KLKTNHIG-HTGYLNTVTVSPDGSLCA 231 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT------------------EEEEEECC-CSSCEEEEEECTTSSEEE
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC------------------ceeeEecC-CCCcEEEEEECCCCCEEE
Confidence 34677766542 35678899999999986532 22334333 367899999999888888
Q ss_pred eEeC-c-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEeee-------ecCCCCceE
Q 003405 92 SLSE-S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKD-------FGVPDTVKS 162 (823)
Q Consensus 92 ~l~d-~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~ke-------i~~~~~~~~ 162 (823)
+-+. + |.+|++.+.+.+..+.....++.++..++...++.+..+.|.+|...........+. -.-+..|.+
T Consensus 232 s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 311 (340)
T 4aow_A 232 SGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTS 311 (340)
T ss_dssp EEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEE
T ss_pred EEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEE
Confidence 8775 5 999999888777666666678888888776667777888999988764322222221 122468899
Q ss_pred EEec--CCeEEEEEc-CceEEEEcCCCC
Q 003405 163 MSWC--GENICIAIR-KGYMILNATNGA 187 (823)
Q Consensus 163 l~~~--~~~i~v~~~-~~y~lidl~~~~ 187 (823)
++|. |+.|+.|.. ....+.|+.+|+
T Consensus 312 l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 312 LAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 9997 456777776 457888998875
No 92
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.53 E-value=0.051 Score=58.46 Aligned_cols=239 Identities=10% Similarity=0.084 Sum_probs=132.5
Q ss_pred CcEEEEEEe--CCEEEEEeC------CCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccC
Q 003405 17 PKIDAVASY--GLKILLGCS------DGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQ 88 (823)
Q Consensus 17 ~~I~ci~~~--~~~L~vGT~------~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~ 88 (823)
..|+|++.. |+.|+-|.. ||.+.+|+....... ..+...... +...|..+...|...
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~--------------~~~~~~~~~-~~~~V~~~~~s~d~~ 107 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN--------------ESLCTAGVQ-TEAGVTDVAWVSEKG 107 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C--------------GGGCSEEEE-CSSCEEEEEEETTTE
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc--------------eeEecccCC-CCCCEEEEEEcCCCC
Confidence 468887754 467888877 788999875533211 111111111 256799999999866
Q ss_pred ceeeEeCc-EEEEeCCCCccccc-----ccCCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEeeeecC-CCCc
Q 003405 89 LLLSLSES-IAFHRLPNLETIAV-----LTKAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFGV-PDTV 160 (823)
Q Consensus 89 ~Ll~l~d~-l~~~~L~~l~~~~~-----i~~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kei~~-~~~~ 160 (823)
++..-.|+ |++|++.+-+.... ......|++++++++...++.+. .+.|.+|....+. .+..+.. .+.+
T Consensus 108 ~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~---~~~~~~~h~~~v 184 (357)
T 4g56_B 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA---VLKSYNAHSSEV 184 (357)
T ss_dssp EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE---EEEEECCCSSCE
T ss_pred EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc---EEEEEcCCCCCE
Confidence 55554455 99999865432211 11234688888888777777774 5668888776432 2333332 4678
Q ss_pred eEEEec--CC-eEEEEEc-CceEEEEcCCCCeeeccCCCCCCCC-E-EEEccC-CeEEE-Ee-CCeEEEEcC-CCccccC
Q 003405 161 KSMSWC--GE-NICIAIR-KGYMILNATNGALSEVFPSGRIGPP-L-VVSLLS-GELLL-GK-ENIGVFVDQ-NGKLLQA 230 (823)
Q Consensus 161 ~~l~~~--~~-~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p-~-i~~~~~-~EfLL-~~-~~~gvfv~~-~G~~~~~ 230 (823)
.+++|. ++ .++.+.. ....+.|+.+++....+.......+ . +...++ +.++. +. |....++|. .|+..
T Consensus 185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~-- 262 (357)
T 4g56_B 185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA-- 262 (357)
T ss_dssp EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC--
T ss_pred EEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe--
Confidence 899996 33 3445554 5678889988865544433222122 2 333344 34554 33 445555664 33332
Q ss_pred CceeecCC-CcEEEEeC---CEEEEEeC-CeEEEEEccCCCceeEEEeeCC
Q 003405 231 DRICWSEA-PIAVIIQK---PYAIALLP-RRVEVRSLRVPYALIQTIVLQN 276 (823)
Q Consensus 231 ~~i~w~~~-P~~v~~~~---PYll~~~~-~~ieV~~l~~~~~lvQ~i~l~~ 276 (823)
..+.-... ...+++.. .||++... +.|.|+++. ++.+++.+...+
T Consensus 263 ~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~-~~~~~~~~~H~~ 312 (357)
T 4g56_B 263 QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDAD-FSEVFRDLSHRD 312 (357)
T ss_dssp EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT-SCEEEEECCCSS
T ss_pred EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECC-CCcEeEECCCCC
Confidence 22322222 34555542 46666654 689999986 577777665443
No 93
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.019 Score=60.98 Aligned_cols=160 Identities=17% Similarity=0.210 Sum_probs=105.8
Q ss_pred cccCCCCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeee-cCCCCCCeeEEEEecccCc
Q 003405 11 LISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTI-SGFSKKPILSMEVLASRQL 89 (823)
Q Consensus 11 l~~~~~~~I~ci~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~-~~~~k~~I~qI~~~~~~~~ 89 (823)
.+..-...|.|++...+.|+.|+.||.|.+|++.... +.....+ ...+..+|..+..-|..++
T Consensus 9 ~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~----------------~~~~~~~~~~~h~~~v~~v~~sp~~~~ 72 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDD----------------FTLIDVLDETAHKKAIRSVAWRPHTSL 72 (330)
T ss_dssp EEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSC----------------CEEEEEECTTCCCSCEEEEEECTTSSE
T ss_pred eeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCC----------------eEEEEEEecCCccCCEEEEEECCCCCE
Confidence 3444456899999998999999999999999976421 1223333 2224679999999999888
Q ss_pred eeeEeC-c-EEEEeCCC-------Cccccccc-CCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcC-CCceeEeeeec-C
Q 003405 90 LLSLSE-S-IAFHRLPN-------LETIAVLT-KAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDG-GRGFVEVKDFG-V 156 (823)
Q Consensus 90 Ll~l~d-~-l~~~~L~~-------l~~~~~i~-~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~-~~~f~~~kei~-~ 156 (823)
|++-+. + |++|++.. .+....+. ....+..++++++...|+.+. .+.|.+|.... +..+..++.+. -
T Consensus 73 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h 152 (330)
T 2hes_X 73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH 152 (330)
T ss_dssp EEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC
T ss_pred EEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC
Confidence 888774 4 99999842 12222222 234677888888766777764 57788988842 22333333332 2
Q ss_pred CCCceEEEec--CCeEEEEEc-CceEEEEcCCC
Q 003405 157 PDTVKSMSWC--GENICIAIR-KGYMILNATNG 186 (823)
Q Consensus 157 ~~~~~~l~~~--~~~i~v~~~-~~y~lidl~~~ 186 (823)
.+.+.+++|. ++.|+.|.. ....+.|+.++
T Consensus 153 ~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 153 SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 4678999997 456666665 45678888765
No 94
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.50 E-value=0.011 Score=63.74 Aligned_cols=185 Identities=11% Similarity=0.079 Sum_probs=115.0
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccC-ceeeE
Q 003405 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQ-LLLSL 93 (823)
Q Consensus 17 ~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~-~Ll~l 93 (823)
..|+|++.. ++.|+.|+.||.|.+|++... +..+.+.++ ..+|..+...+... ++++.
T Consensus 128 ~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~------------------~~~~~~~~h-~~~V~~~~~~~~~~~~l~s~ 188 (344)
T 4gqb_B 128 DIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ------------------VVLSSYRAH-AAQVTCVAASPHKDSVFLSC 188 (344)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTT------------------EEEEEECCC-SSCEEEEEECSSCTTEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECCCC------------------cEEEEEcCc-CCceEEEEecCCCCCceeee
Confidence 468888765 568999999999999997632 233444443 67899999988764 56666
Q ss_pred eC-c-EEEEeCCCCcccccccC---CCCcEEEEeeCCCce-EEEEE-cCeEEEEEEcCCCceeEeeeec-CCCCceEEEe
Q 003405 94 SE-S-IAFHRLPNLETIAVLTK---AKGANVYSWDDRRGF-LCFAR-QKRVCIFRHDGGRGFVEVKDFG-VPDTVKSMSW 165 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~~~~~i~~---~kg~~~fa~~~~~~~-l~V~~-kkki~l~~~~~~~~f~~~kei~-~~~~~~~l~~ 165 (823)
++ + |++|++.+.+....+.. ...+++++.+++.+. ++.+. .+.|.+|....++. ++.+. -.+.|.+++|
T Consensus 189 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~---~~~~~~h~~~v~~v~f 265 (344)
T 4gqb_B 189 SEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC---VLSSAVHSQCVTGLVF 265 (344)
T ss_dssp ETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C---CEEEECCSSCEEEEEE
T ss_pred ccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE---EEEEcCCCCCEEEEEE
Confidence 64 5 99999987665544321 123567777765554 55564 46788887764432 23332 2467899999
Q ss_pred c--CC-eEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCe-EEE-E-eCCeEEEEcCC
Q 003405 166 C--GE-NICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGE-LLL-G-KENIGVFVDQN 224 (823)
Q Consensus 166 ~--~~-~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E-fLL-~-~~~~gvfv~~~ 224 (823)
. |. .|+-|.. ....+.|+.+++...+..... .--.+...++++ ++. | .|+...+.+..
T Consensus 266 sp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~-~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 266 SPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRD-FVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSS-CEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred ccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCC-CEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 7 33 3555655 568899999887665533221 111233345555 443 3 35555555543
No 95
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.0042 Score=66.48 Aligned_cols=152 Identities=12% Similarity=0.075 Sum_probs=100.5
Q ss_pred CcEEEEEEeC----CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceee
Q 003405 17 PKIDAVASYG----LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (823)
Q Consensus 17 ~~I~ci~~~~----~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~ 92 (823)
..|.|++... +.++.|+.||.+.+|++.... ..+.....+..+|..+..-|...++++
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~------------------~~~~~~~~~~~~i~~~~~~pdg~~las 187 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS------------------QYIVHSAKSDVEYSSGVLHKDSLLLAL 187 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEESSSSC------------------EEEEECCCSSCCCCEEEECTTSCEEEE
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc------------------EEEEEecCCCCceEEEEECCCCCEEEE
Confidence 4688888754 578889999999999976421 112222233557999999998777777
Q ss_pred EeC-c-EEEEeCCCCccc-ccccC--CCCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEeeeecCCC-Cc--eEEE
Q 003405 93 LSE-S-IAFHRLPNLETI-AVLTK--AKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPD-TV--KSMS 164 (823)
Q Consensus 93 l~d-~-l~~~~L~~l~~~-~~i~~--~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kei~~~~-~~--~~l~ 164 (823)
-+. + |++|++.+.+.. ..+.. ...++.++++++...++.+..+.|.+|.+...+....++.+..+. .+ .+++
T Consensus 188 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (343)
T 3lrv_A 188 YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD 267 (343)
T ss_dssp ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEE
T ss_pred EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEE
Confidence 554 5 999999876654 33333 457889999988778888888888888776443222222211111 11 4688
Q ss_pred ec--CCeEEEEE--cCceEEEEcCCC
Q 003405 165 WC--GENICIAI--RKGYMILNATNG 186 (823)
Q Consensus 165 ~~--~~~i~v~~--~~~y~lidl~~~ 186 (823)
|. |..++.|. .+...++++.++
T Consensus 268 ~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 268 IDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ECCCCCEEEEecCCCCcEEEEEEccc
Confidence 87 55677765 456788888654
No 96
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.48 E-value=0.015 Score=73.78 Aligned_cols=177 Identities=15% Similarity=0.140 Sum_probs=114.1
Q ss_pred CCcEEEEEEeC----CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCcee
Q 003405 16 SPKIDAVASYG----LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLL 91 (823)
Q Consensus 16 ~~~I~ci~~~~----~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll 91 (823)
...|+|++... ..++.|+.||.|.+|++.... ....+.+ +..+|..+...|..+.++
T Consensus 699 ~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~------------------~~~~~~~-h~~~v~~~~~sp~~~~l~ 759 (1249)
T 3sfz_A 699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE------------------CRNTMFG-HTNSVNHCRFSPDDELLA 759 (1249)
T ss_dssp SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS------------------EEEEECC-CSSCEEEEEECSSTTEEE
T ss_pred CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc------------------hhheecC-CCCCEEEEEEecCCCEEE
Confidence 45788887753 378899999999999976421 2233333 367899999999988888
Q ss_pred eEeC-c-EEEEeCCCCcccccccC--------------CCCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEeeeec
Q 003405 92 SLSE-S-IAFHRLPNLETIAVLTK--------------AKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFG 155 (823)
Q Consensus 92 ~l~d-~-l~~~~L~~l~~~~~i~~--------------~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kei~ 155 (823)
+.+. + |.+|++.+.+....+.. ...+.+++++++...++++..+.+.+|....+...... ...
T Consensus 760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~-~~~ 838 (1249)
T 3sfz_A 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI-HTG 838 (1249)
T ss_dssp EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEE-ECS
T ss_pred EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEE-cCC
Confidence 8876 5 99999865432222111 11455566777777888888999988887754322211 112
Q ss_pred CCCCceEEEec--CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE
Q 003405 156 VPDTVKSMSWC--GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL 212 (823)
Q Consensus 156 ~~~~~~~l~~~--~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL 212 (823)
-...+.+++|. ++.++.|.. ....++|+.++.....+.........+...+++.+++
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~ 898 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL 898 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEE
Confidence 35688899997 456777766 4578889988765444432221112233445665555
No 97
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.47 E-value=0.17 Score=54.21 Aligned_cols=232 Identities=11% Similarity=0.105 Sum_probs=138.4
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
...|.|++.. ++.|+.|+.||.+.+|+..... ....+. .+...|..+...|..+.+++-
T Consensus 64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~------------------~~~~~~-~~~~~v~~~~~sp~g~~lasg 124 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN------------------KEHAVT-MPCTWVMACAYAPSGCAIACG 124 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC------------------EEEEEE-CSSSCCCEEEECTTSSEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC------------------cceEEe-cCCCCEEEEEECCCCCEEEEe
Confidence 4579998876 4689999999999999854321 122222 235679999999988887777
Q ss_pred eC-c-EEEEeCCCCc------ccccc-cCCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeecC-CCCceE
Q 003405 94 SE-S-IAFHRLPNLE------TIAVL-TKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGV-PDTVKS 162 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~------~~~~i-~~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~~-~~~~~~ 162 (823)
+. + +.+|++..-. ....+ .....+..++..++...++.+ ..+.|.+|....++ .++.+.- ...+.+
T Consensus 125 ~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~---~~~~~~~h~~~v~~ 201 (354)
T 2pbi_B 125 GLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ---LLQSFHGHGADVLC 201 (354)
T ss_dssp STTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEE
T ss_pred eCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe---EEEEEcCCCCCeEE
Confidence 64 4 9999875321 11111 122346667777766666666 55678888876443 2233322 356777
Q ss_pred EEec----CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-Ee-CCeEEEEcCCCccccCCceee
Q 003405 163 MSWC----GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-GK-ENIGVFVDQNGKLLQADRICW 235 (823)
Q Consensus 163 l~~~----~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~~-~~~gvfv~~~G~~~~~~~i~w 235 (823)
++|. |+.++.|.. ....+.|+.+++....+......-..+...+++..++ +. |+..-+.|..... ....+
T Consensus 202 ~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~---~~~~~ 278 (354)
T 2pbi_B 202 LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR---EVAIY 278 (354)
T ss_dssp EEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEEEE
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---EEEEE
Confidence 8774 356777766 5678999999876555543222112334446666665 33 4555566653321 01111
Q ss_pred cC-----CCcEEEEe--CCEEEEEeC-CeEEEEEccCCCceeEEEe
Q 003405 236 SE-----APIAVIIQ--KPYAIALLP-RRVEVRSLRVPYALIQTIV 273 (823)
Q Consensus 236 ~~-----~P~~v~~~--~PYll~~~~-~~ieV~~l~~~~~lvQ~i~ 273 (823)
.. ....+.+. ..++++-.. +.|.|+++. ++..++++.
T Consensus 279 ~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~-~~~~~~~l~ 323 (354)
T 2pbi_B 279 SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL-KGSRVSILF 323 (354)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCSEEEEEC
T ss_pred cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECC-CCceEEEEE
Confidence 11 12234443 456666664 589999986 466666553
No 98
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=97.47 E-value=0.062 Score=62.48 Aligned_cols=189 Identities=15% Similarity=0.175 Sum_probs=117.1
Q ss_pred CcEEEEEEeCC---EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 17 PKIDAVASYGL---KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 17 ~~I~ci~~~~~---~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
..|.|++...+ .|+.|+.||.+.+|+... .++.+.+.+ +...|..+..-|..+++++-
T Consensus 148 ~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~------------------~~~~~~l~~-H~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP------------------FKFKSTFGE-HTKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp SCEEEEEECSSSSCEEEEEETTSCEEEEETTT------------------BEEEEEECC-CSSCEEEEEECTTSSEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCCeEEEEECCC------------------CeEeeeecc-ccCceEEEEECCCCCEEEEE
Confidence 46888887643 599999999999998432 233444444 36789999999998888888
Q ss_pred eC-c-EEEEeCCCCcccccc--------cCCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEe-----------
Q 003405 94 SE-S-IAFHRLPNLETIAVL--------TKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEV----------- 151 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~~~~~i--------~~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~----------- 151 (823)
+. + |++|++.+-+....+ .....+..++++++...++.+ ..+.|.++....++....+
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence 75 4 999998665433332 223467888888877677766 4567888876532211111
Q ss_pred -----------------------------eee-cCCCCceEEEec--CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCC
Q 003405 152 -----------------------------KDF-GVPDTVKSMSWC--GENICIAIR-KGYMILNATNGALSEVFPSGRIG 198 (823)
Q Consensus 152 -----------------------------kei-~~~~~~~~l~~~--~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~ 198 (823)
+.+ .-.+.+.+++|. |..|+.|.. ....+.|+.++.....++.+..
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~- 367 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA- 367 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS-
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCc-
Confidence 001 112467788886 456666665 5678889988877665543321
Q ss_pred CCE--EEEccCCeEEEE-eCCeEEEEcCCC
Q 003405 199 PPL--VVSLLSGELLLG-KENIGVFVDQNG 225 (823)
Q Consensus 199 ~p~--i~~~~~~EfLL~-~~~~gvfv~~~G 225 (823)
.++ +...+++.++-+ .|+..-+.+..+
T Consensus 368 ~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~ 397 (611)
T 1nr0_A 368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGG 397 (611)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEECSSS
T ss_pred ceEEEEEECCCCcEEEEEcCCceEEeecCC
Confidence 122 222344444443 445555555444
No 99
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.45 E-value=0.022 Score=59.84 Aligned_cols=229 Identities=12% Similarity=0.137 Sum_probs=133.8
Q ss_pred cEEEEEE--eCCEEEEEeCC-CcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe
Q 003405 18 KIDAVAS--YGLKILLGCSD-GSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 18 ~I~ci~~--~~~~L~vGT~~-G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
.+.+++. .++.||++..+ |.+.+|++..... .......+.. ...+..+.+.|..+.+++.+
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~--------------~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~ 102 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG--------------ALTFAAESAL--PGSLTHISTDHQGQFVFVGS 102 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC--------------CEEEEEEEEC--SSCCSEEEECTTSSEEEEEE
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEecCCCC--------------ceeecccccc--CCCCcEEEEcCCCCEEEEEe
Confidence 4444444 45789999887 9999999763221 1222223322 23788899999888777665
Q ss_pred C--c-EEEEeCC---CCcccccccCCCCcEEEEeeCCCceEEEEE--cCeEEEEEEcCCCceeEee--eec--CCCCceE
Q 003405 95 E--S-IAFHRLP---NLETIAVLTKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHDGGRGFVEVK--DFG--VPDTVKS 162 (823)
Q Consensus 95 d--~-l~~~~L~---~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~~~~~f~~~k--ei~--~~~~~~~ 162 (823)
. + |.+|++. ..+....+.....+..++++++...++++. ...|.+|....+....... .+. ....|.+
T Consensus 103 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (343)
T 1ri6_A 103 YNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH 182 (343)
T ss_dssp TTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEE
T ss_pred cCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcce
Confidence 3 4 9999983 333333344445677788888777777774 5788888887523343332 222 3357889
Q ss_pred EEec--CCeEEEEEc--CceEEEEcCC--CCeeec-----cCCCC--CCCCE-EEEccCCeEEE-Ee--CCeEEEEcCC-
Q 003405 163 MSWC--GENICIAIR--KGYMILNATN--GALSEV-----FPSGR--IGPPL-VVSLLSGELLL-GK--ENIGVFVDQN- 224 (823)
Q Consensus 163 l~~~--~~~i~v~~~--~~y~lidl~~--~~~~~L-----~~~~~--~~~p~-i~~~~~~EfLL-~~--~~~gvfv~~~- 224 (823)
++|. |+.++++.. ....++|+.. ++...+ .+.+- ...|. +...+++.+|+ +. ++...+++.+
T Consensus 183 ~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 183 MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 9997 456777763 4578889853 433211 22221 11232 44456676665 33 3444455543
Q ss_pred -C-ccccCCceeecCCCcEEEEe--CCEEEEEeC--CeEEEEEc
Q 003405 225 -G-KLLQADRICWSEAPIAVIIQ--KPYAIALLP--RRVEVRSL 262 (823)
Q Consensus 225 -G-~~~~~~~i~w~~~P~~v~~~--~PYll~~~~--~~ieV~~l 262 (823)
+ .......+.-...|..+++. ..++++... +.+.|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 263 DGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp TSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred CCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 2 22111223333457777775 457777763 67888865
No 100
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.43 E-value=0.079 Score=55.50 Aligned_cols=249 Identities=11% Similarity=0.048 Sum_probs=140.8
Q ss_pred CCEEEEE-eCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC--c-EEEEe
Q 003405 26 GLKILLG-CSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE--S-IAFHR 101 (823)
Q Consensus 26 ~~~L~vG-T~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d--~-l~~~~ 101 (823)
++.+|++ ..+|.|.+|+++... ......... ....+..+...|..+.+++.+. + +.+|+
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~---------------~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEG---------------ALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTS---------------CEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCC---------------cEEEeeeEe--cCCCCceEEECCCCCEEEEeecCCCeEEEEE
Confidence 3578888 679999999876411 111222222 2457888999998887777765 4 99998
Q ss_pred CC----CCcccccccCCCCcEEEEeeCCCceEEEEE--cCeEEEEEEcCCCceeEeeeecCCCCceEEEec--CCeEEEE
Q 003405 102 LP----NLETIAVLTKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GENICIA 173 (823)
Q Consensus 102 L~----~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~--~~~i~v~ 173 (823)
+. ++.....+....++..++++++...++++. ...|.+|....+......+.+.....|.+++|. |+.++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 146 (343)
T 1ri6_A 67 IAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVP 146 (343)
T ss_dssp ECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEE
T ss_pred ecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEe
Confidence 86 333333333333677888888877777775 466888888522223344455556678889997 4578888
Q ss_pred E--cCceEEEEcCC-CCeeecc----CCCCCCCCE-EEEccCCeEEE-Ee--CCeEEEEcCC---CccccCCcee-ec--
Q 003405 174 I--RKGYMILNATN-GALSEVF----PSGRIGPPL-VVSLLSGELLL-GK--ENIGVFVDQN---GKLLQADRIC-WS-- 236 (823)
Q Consensus 174 ~--~~~y~lidl~~-~~~~~L~----~~~~~~~p~-i~~~~~~EfLL-~~--~~~gvfv~~~---G~~~~~~~i~-w~-- 236 (823)
. .....++|+.+ ++...+. .......|. +...+++.+++ +. ++....++.+ |.......+. .+
T Consensus 147 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~ 226 (343)
T 1ri6_A 147 ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN 226 (343)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred cCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc
Confidence 7 35688899987 6654322 111112344 34446777554 32 3445555543 3221000111 11
Q ss_pred ----CCCcEEEEe--CCEEEEEeC--CeEEEEEccC-C--CceeEEEeeCCc-ccc--cccCCeEEEec
Q 003405 237 ----EAPIAVIIQ--KPYAIALLP--RRVEVRSLRV-P--YALIQTIVLQNV-RHL--IPSSNAVVVAL 291 (823)
Q Consensus 237 ----~~P~~v~~~--~PYll~~~~--~~ieV~~l~~-~--~~lvQ~i~l~~~-~~l--~~~~~~v~v~s 291 (823)
..|..+++. ..++++... +.|.|+++.. + ...++.++.... ..+ .+.++.+++++
T Consensus 227 ~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 227 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEEC
T ss_pred ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEec
Confidence 123346665 347776553 6789998852 1 234445544322 111 23345566655
No 101
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.012 Score=72.16 Aligned_cols=191 Identities=13% Similarity=0.148 Sum_probs=123.6
Q ss_pred CCCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceee
Q 003405 15 CSPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (823)
Q Consensus 15 ~~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~ 92 (823)
.+..|+|++.. ++.|+.|+.||.|.+|+.... +...... ++.+|..|...+ .++|++
T Consensus 16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~------------------~~~~~~~--~~~~V~~l~fsp-g~~L~S 74 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV------------------EVVIKLE--DRSAIKEMRFVK-GIYLVV 74 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC------------------EEEEECS--SCCCEEEEEEET-TTEEEE
T ss_pred CCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc------------------EEEEEcC--CCCCEEEEEEcC-CCEEEE
Confidence 36689998877 469999999999999975421 1111211 357899999999 556777
Q ss_pred EeC-c-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEee---------ee-cCCCC
Q 003405 93 LSE-S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVK---------DF-GVPDT 159 (823)
Q Consensus 93 l~d-~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~k---------ei-~~~~~ 159 (823)
.++ + |++|++.+-+.+..+.....+++++++++...++++. .+.|.+|....+. ....+ .. .-.+.
T Consensus 75 ~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~-~~~~~i~~~~~~~~~~~~h~~~ 153 (902)
T 2oaj_A 75 INAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQ-LSSFKLDNLQKSSFFPAARLSP 153 (902)
T ss_dssp EETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTE-EEEEEECCHHHHHTCSSSCCCC
T ss_pred EECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCc-cccceeccccccccccccCCCC
Confidence 775 4 9999997765554444445688889988877888884 5678888776432 11110 00 12368
Q ss_pred ceEEEecC---CeEEEEEcCceEEEEcCCCCeeeccCCC----C------------CCCC--EEEEccCCeEEE-Ee-CC
Q 003405 160 VKSMSWCG---ENICIAIRKGYMILNATNGALSEVFPSG----R------------IGPP--LVVSLLSGELLL-GK-EN 216 (823)
Q Consensus 160 ~~~l~~~~---~~i~v~~~~~y~lidl~~~~~~~L~~~~----~------------~~~p--~i~~~~~~EfLL-~~-~~ 216 (823)
|.+++|.. +.+++|...+..+.|+.+++....+... . ...+ .+...+++.+|+ +. |+
T Consensus 154 V~sl~~sp~~~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg 233 (902)
T 2oaj_A 154 IVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN 233 (902)
T ss_dssp CCEEEEETTEEEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC
T ss_pred eEEEEEccCCCCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC
Confidence 99999984 3678888776669999988654433211 0 0112 233456777776 33 44
Q ss_pred eEEEEcC-CCcc
Q 003405 217 IGVFVDQ-NGKL 227 (823)
Q Consensus 217 ~gvfv~~-~G~~ 227 (823)
...+.|. +|+.
T Consensus 234 ~i~lWd~~~g~~ 245 (902)
T 2oaj_A 234 SLVFWDANSGHM 245 (902)
T ss_dssp CEEEEETTTCCE
T ss_pred eEEEEECCCCcE
Confidence 5556664 4543
No 102
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.021 Score=62.87 Aligned_cols=239 Identities=13% Similarity=0.131 Sum_probs=135.3
Q ss_pred CCcEEEEEEeC---CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceee
Q 003405 16 SPKIDAVASYG---LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (823)
Q Consensus 16 ~~~I~ci~~~~---~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~ 92 (823)
...|+|++... +.|+.|+.||.|.+|++...... ..+.....+. +..+|..|...|..+.+++
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~------------~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG------------EVYSSSLTYD--CSSTVTQITMIPNFDAFAV 128 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT------------CCCSCSEEEE--CSSCEEEEEECTTSSEEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccC------------cccceeeecc--CCCCEEEEEEeCCCCEEEE
Confidence 45799988765 58999999999999997641110 0111111211 3679999999998888888
Q ss_pred EeC-c-EEEEeCC---CCcc--------ccccc-----CCCCcEEEE--eeCCCceEEEEE-cCeEEEEEEcCCCceeEe
Q 003405 93 LSE-S-IAFHRLP---NLET--------IAVLT-----KAKGANVYS--WDDRRGFLCFAR-QKRVCIFRHDGGRGFVEV 151 (823)
Q Consensus 93 l~d-~-l~~~~L~---~l~~--------~~~i~-----~~kg~~~fa--~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~ 151 (823)
.+. + |.+|++. +-+. +..+. ....+.+++ .+++...++++. .+.|.+|....++ .+
T Consensus 129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~ 205 (437)
T 3gre_A 129 SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE---RL 205 (437)
T ss_dssp EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC---EE
T ss_pred EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe---ee
Confidence 875 5 9999884 1111 11110 112233332 334444566664 4677788776443 23
Q ss_pred eeecC---CCCceEEEec--CCeEEEEEcCc-eEEEEcCCCCeeeccCCCCCCCCEE--EEc----cCCeEEEE-e-CCe
Q 003405 152 KDFGV---PDTVKSMSWC--GENICIAIRKG-YMILNATNGALSEVFPSGRIGPPLV--VSL----LSGELLLG-K-ENI 217 (823)
Q Consensus 152 kei~~---~~~~~~l~~~--~~~i~v~~~~~-y~lidl~~~~~~~L~~~~~~~~p~i--~~~----~~~EfLL~-~-~~~ 217 (823)
+.+.. .+.+++++|. ++.++.|...+ ..++|+.+++....+..+.. .++. ... +++.++++ . |+.
T Consensus 206 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~dg~ 284 (437)
T 3gre_A 206 QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKTF 284 (437)
T ss_dssp EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC-CceEEEEeccccCCCccEEEEEcCCCc
Confidence 33332 4689999996 56788888754 78999998876554432211 1221 111 24456653 2 333
Q ss_pred EEEEcCC-Ccccc--------CCceeecC-----------------CCcEEEEeC-CEEEEEe-CCeEEEEEccCCCcee
Q 003405 218 GVFVDQN-GKLLQ--------ADRICWSE-----------------APIAVIIQK-PYAIALL-PRRVEVRSLRVPYALI 269 (823)
Q Consensus 218 gvfv~~~-G~~~~--------~~~i~w~~-----------------~P~~v~~~~-PYll~~~-~~~ieV~~l~~~~~lv 269 (823)
..+.|.. |+..+ ...+.|+. ....+++.. .++++.. ++.|.|+++. ++...
T Consensus 285 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~-~~~~~ 363 (437)
T 3gre_A 285 LTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLN-ELSSS 363 (437)
T ss_dssp EEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETT-CGGGC
T ss_pred EEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECC-Ccccc
Confidence 4445543 33210 01122211 123455553 3666665 4789999997 46666
Q ss_pred EEEe
Q 003405 270 QTIV 273 (823)
Q Consensus 270 Q~i~ 273 (823)
+++.
T Consensus 364 ~~~~ 367 (437)
T 3gre_A 364 KAVI 367 (437)
T ss_dssp EEEE
T ss_pred eEEe
Confidence 6664
No 103
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=97.35 E-value=0.24 Score=53.70 Aligned_cols=251 Identities=15% Similarity=0.146 Sum_probs=138.4
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe
Q 003405 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 17 ~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
..|.|++.. ++.|+.|+ ++.+.+|++........ ..+...-....-.+.......+...|..+..-|..+.+++-+
T Consensus 65 ~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~ 142 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR-LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 142 (393)
T ss_dssp SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEE-ECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEE-ecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence 457777654 45777776 68899998754221000 000000000000000000001123588999999888888777
Q ss_pred C-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeecCCCCceEEEec---C
Q 003405 95 E-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC---G 167 (823)
Q Consensus 95 d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~---~ 167 (823)
+ + |++|++.+.+....+. ....+.++++.++...++.+ ..+.|.+|....+. ....+...+.+.+++|. |
T Consensus 143 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 143 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ---CSLTLSIEDGVTTVAVSPGDG 219 (393)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---EEEEEECSSCEEEEEECSTTC
T ss_pred CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe---eEEEEEcCCCcEEEEEECCCC
Confidence 5 4 9999998766544433 23467888888877777766 45678888776432 23334556788899886 4
Q ss_pred CeEEEEEc-CceEEEEcCCCCeeeccCCC----C-CCCC--EEEEccCCeEEE-E-eCCeEEEEcCCCccc---------
Q 003405 168 ENICIAIR-KGYMILNATNGALSEVFPSG----R-IGPP--LVVSLLSGELLL-G-KENIGVFVDQNGKLL--------- 228 (823)
Q Consensus 168 ~~i~v~~~-~~y~lidl~~~~~~~L~~~~----~-~~~p--~i~~~~~~EfLL-~-~~~~gvfv~~~G~~~--------- 228 (823)
..++.|.. ....++|+.++.....+... . ...+ .+...+++.+|+ + .|+...+.|......
T Consensus 220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~ 299 (393)
T 1erj_A 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299 (393)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence 56777776 55788999988754433211 0 1112 233446777776 3 345555555432100
Q ss_pred cCCceeecCC---CcEEEEe--CCEEEEEeC-CeEEEEEccCCCceeEEEe
Q 003405 229 QADRICWSEA---PIAVIIQ--KPYAIALLP-RRVEVRSLRVPYALIQTIV 273 (823)
Q Consensus 229 ~~~~i~w~~~---P~~v~~~--~PYll~~~~-~~ieV~~l~~~~~lvQ~i~ 273 (823)
......+.+. ...+++. ..||++... +.|.|+++. ++..++++.
T Consensus 300 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~-~~~~~~~l~ 349 (393)
T 1erj_A 300 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK-SGNPLLMLQ 349 (393)
T ss_dssp -CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT-TCCEEEEEE
T ss_pred CcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECC-CCeEEEEEC
Confidence 0111233222 2334443 467777765 579999986 466666664
No 104
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=97.34 E-value=0.026 Score=60.19 Aligned_cols=153 Identities=10% Similarity=0.107 Sum_probs=98.4
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEeccc------
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASR------ 87 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~------ 87 (823)
...|.|++.. ++.|+.|+.||.|.+|++..... ... ....-+...|..+...|..
T Consensus 118 ~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~---------------~~~--~~~~~~~~~v~~~~~~~~~~~~~~~ 180 (343)
T 2xzm_R 118 QSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK---------------FSS--AEKENHSDWVSCVRYSPIMKSANKV 180 (343)
T ss_dssp CSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE---------------EEC--CTTTSCSSCEEEEEECCCCCSCSCC
T ss_pred CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce---------------eee--ecccCCCceeeeeeecccccccccc
Confidence 4578888765 56899999999999999763210 000 0001124567777766654
Q ss_pred ----CceeeEeC-c-EEEEeCCCCcccccc-cCCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEeeeecCCCC
Q 003405 88 ----QLLLSLSE-S-IAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFGVPDT 159 (823)
Q Consensus 88 ----~~Ll~l~d-~-l~~~~L~~l~~~~~i-~~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kei~~~~~ 159 (823)
..+++.+. + |++|+.. .+....+ .....++.++++++...|+.+. .+.|.+|....... ..+.+...+.
T Consensus 181 ~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~~ 257 (343)
T 2xzm_R 181 QPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY--PQREFDAGST 257 (343)
T ss_dssp CSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS--CSEEEECSSC
T ss_pred CCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc--cceeecCCCc
Confidence 45666664 4 9999943 2222222 2234688889988877777774 56788888742211 1223334567
Q ss_pred ceEEEec--CCeEEEEEcCceEEEEcCCCCe
Q 003405 160 VKSMSWC--GENICIAIRKGYMILNATNGAL 188 (823)
Q Consensus 160 ~~~l~~~--~~~i~v~~~~~y~lidl~~~~~ 188 (823)
+.+++|. +..+++|......++|+.+++.
T Consensus 258 v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 258 INQIAFNPKLQWVAVGTDQGVKIFNLMTQSK 288 (343)
T ss_dssp EEEEEECSSSCEEEEEESSCEEEEESSSCCS
T ss_pred EEEEEECCCCCEEEEECCCCEEEEEeCCCCC
Confidence 8999998 4568888888899999987654
No 105
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.33 E-value=0.012 Score=62.28 Aligned_cols=161 Identities=13% Similarity=0.123 Sum_probs=101.6
Q ss_pred CCCcEEEEEE--------eCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEE----
Q 003405 15 CSPKIDAVAS--------YGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSME---- 82 (823)
Q Consensus 15 ~~~~I~ci~~--------~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~---- 82 (823)
-...|+|++. .++.|+.|+.+|.|.+|++..... .........+....+|..+.
T Consensus 110 ~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~ 175 (357)
T 3i2n_A 110 HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD--------------PVANMEPVQGENKRDCWTVAFGNA 175 (357)
T ss_dssp CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS--------------CSEEECCCTTSCCCCEEEEEEECC
T ss_pred cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC--------------cceeccccCCCCCCceEEEEEEec
Confidence 3457888854 356999999999999999775321 11111111222244777777
Q ss_pred EecccCceeeEeC-c-EEEEeCCCCcccccccCCCCcEEEEeeC---CCceEEEE-EcCeEEEEEEcCCCceeEee--e-
Q 003405 83 VLASRQLLLSLSE-S-IAFHRLPNLETIAVLTKAKGANVYSWDD---RRGFLCFA-RQKRVCIFRHDGGRGFVEVK--D- 153 (823)
Q Consensus 83 ~~~~~~~Ll~l~d-~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~---~~~~l~V~-~kkki~l~~~~~~~~f~~~k--e- 153 (823)
.-+..+.+++.++ + |.+|++.+.+..........++.+++++ +...++++ ..+.|.+|....++...... .
T Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 255 (357)
T 3i2n_A 176 YNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSE 255 (357)
T ss_dssp CC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEE
T ss_pred cCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeecc
Confidence 3466677777765 5 9999998766544444456788899987 55667666 46778888876322111111 1
Q ss_pred ecCCCCceEEEecCC---eEEEEEc-CceEEEEcCCCCee
Q 003405 154 FGVPDTVKSMSWCGE---NICIAIR-KGYMILNATNGALS 189 (823)
Q Consensus 154 i~~~~~~~~l~~~~~---~i~v~~~-~~y~lidl~~~~~~ 189 (823)
-.-...+.+++|..+ .++.|.. ....++|+.++...
T Consensus 256 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 256 KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 133568999999853 4555655 45778898876543
No 106
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=97.33 E-value=0.012 Score=69.70 Aligned_cols=157 Identities=11% Similarity=0.142 Sum_probs=107.1
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEeccc--Ccee
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASR--QLLL 91 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~--~~Ll 91 (823)
...|.|++.. ++.|+.|+.||.|.+|+..... .+.+..... -+...|..+...|.. ..++
T Consensus 472 ~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~---------------~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~ 535 (694)
T 3dm0_A 472 TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC---------------KYTISEGGE-GHRDWVSCVRFSPNTLQPTIV 535 (694)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE---------------EEEECSSTT-SCSSCEEEEEECSCSSSCEEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc---------------ceeeccCCC-CCCCcEEEEEEeCCCCcceEE
Confidence 4568888765 4689999999999999864321 111111111 135679999888865 3566
Q ss_pred eEeC-c-EEEEeCCCCcccccccC-CCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEeeeecCCCCceEEEec-
Q 003405 92 SLSE-S-IAFHRLPNLETIAVLTK-AKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC- 166 (823)
Q Consensus 92 ~l~d-~-l~~~~L~~l~~~~~i~~-~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~- 166 (823)
+.+. + |++|++.+.+....+.. ...+++++++++...++.+. .+.|.+|....+ +.+..+..+..+.+++|.
T Consensus 536 s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~~~~~v~~~~~sp 612 (694)
T 3dm0_A 536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLEANSVIHALCFSP 612 (694)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCBCSSCEEEEEECS
T ss_pred EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEecCCCcEEEEEEcC
Confidence 6654 4 99999987654444332 34578899988877777764 567888887644 234445556788999998
Q ss_pred -CCeEEEEEcCceEEEEcCCCCeeec
Q 003405 167 -GENICIAIRKGYMILNATNGALSEV 191 (823)
Q Consensus 167 -~~~i~v~~~~~y~lidl~~~~~~~L 191 (823)
+..++.+...+..+.|+.+++...-
T Consensus 613 ~~~~l~~~~~~~i~iwd~~~~~~~~~ 638 (694)
T 3dm0_A 613 NRYWLCAATEHGIKIWDLESKSIVED 638 (694)
T ss_dssp SSSEEEEEETTEEEEEETTTTEEEEE
T ss_pred CCcEEEEEcCCCEEEEECCCCCChhh
Confidence 4468888888899999998865443
No 107
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.013 Score=70.18 Aligned_cols=192 Identities=16% Similarity=0.156 Sum_probs=119.5
Q ss_pred CCcEEEEEEe----CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecc--cCc
Q 003405 16 SPKIDAVASY----GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS--RQL 89 (823)
Q Consensus 16 ~~~I~ci~~~----~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~--~~~ 89 (823)
...|+|++.. ++.|+.|+.||.|.+|++.... ......... +..+|..+...|. .+.
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~----------------~~~~~~~~~-h~~~V~~v~~sp~~~~~~ 115 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR----------------WSQIAVHAV-HSASVNSVQWAPHEYGPL 115 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE----------------EEEEEEECC-CSSCEEEEEECCGGGCSE
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc----------------ccccccccC-CCCCeEEEEECCCCCCCE
Confidence 4579999875 6799999999999999976421 112223332 3679999999998 777
Q ss_pred eeeEeC-c-EEEEeCCCCcccc--c-ccCCCCcEEEEeeCC-------------CceEEEE-EcCeEEEEEEcCCCc-ee
Q 003405 90 LLSLSE-S-IAFHRLPNLETIA--V-LTKAKGANVYSWDDR-------------RGFLCFA-RQKRVCIFRHDGGRG-FV 149 (823)
Q Consensus 90 Ll~l~d-~-l~~~~L~~l~~~~--~-i~~~kg~~~fa~~~~-------------~~~l~V~-~kkki~l~~~~~~~~-f~ 149 (823)
+++.+. + |.+|++.+..... . .....+++++++++. ...++++ ..+.|.+|....+.. +.
T Consensus 116 l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~ 195 (753)
T 3jro_A 116 LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195 (753)
T ss_dssp EEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEE
T ss_pred EEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccce
Confidence 777775 5 9999997652221 1 123346788888773 3456666 456788998875422 23
Q ss_pred EeeeecC-CCCceEEEecC-----CeEEEEEc-CceEEEEcCCCCe---eeccCCCCC--CCCEEEEccCCeEEEE--eC
Q 003405 150 EVKDFGV-PDTVKSMSWCG-----ENICIAIR-KGYMILNATNGAL---SEVFPSGRI--GPPLVVSLLSGELLLG--KE 215 (823)
Q Consensus 150 ~~kei~~-~~~~~~l~~~~-----~~i~v~~~-~~y~lidl~~~~~---~~L~~~~~~--~~p~i~~~~~~EfLL~--~~ 215 (823)
....+.. .+.+.+++|.. +.++.|.. +...++|+.+++. ..+...... .--.+...+++.++++ .|
T Consensus 196 ~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D 275 (753)
T 3jro_A 196 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (753)
T ss_dssp EEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSS
T ss_pred eeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCC
Confidence 3333332 46899999983 34666665 4578899988642 122221111 1123455567776663 34
Q ss_pred CeEEEEcCC
Q 003405 216 NIGVFVDQN 224 (823)
Q Consensus 216 ~~gvfv~~~ 224 (823)
+...+.+..
T Consensus 276 g~I~vwd~~ 284 (753)
T 3jro_A 276 NKVTLWKEN 284 (753)
T ss_dssp SCEECCBCC
T ss_pred CEEEEEecC
Confidence 445555543
No 108
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.27 E-value=0.0097 Score=63.23 Aligned_cols=178 Identities=10% Similarity=0.058 Sum_probs=101.0
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEE--ecccCcee
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEV--LASRQLLL 91 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~--~~~~~~Ll 91 (823)
...|+|++.. ++.|+.|+.||.|.+|++.... .... .. +..+|..+.. -+..+.++
T Consensus 86 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~------------------~~~~-~~-~~~~v~~~~~~~~~~~~~l~ 145 (368)
T 3mmy_A 86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ------------------AIQI-AQ-HDAPVKTIHWIKAPNYSCVM 145 (368)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE------------------EEEE-EE-CSSCEEEEEEEECSSCEEEE
T ss_pred cCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC------------------ceee-cc-ccCceEEEEEEeCCCCCEEE
Confidence 5678888875 4689999999999999976421 1111 12 3678999998 56666677
Q ss_pred eEeC-c-EEEEeCCCCcccccccCCCCcEEE------------------------------------------EeeCCC-
Q 003405 92 SLSE-S-IAFHRLPNLETIAVLTKAKGANVY------------------------------------------SWDDRR- 126 (823)
Q Consensus 92 ~l~d-~-l~~~~L~~l~~~~~i~~~kg~~~f------------------------------------------a~~~~~- 126 (823)
+.+. + |.+|++.+.+.+..+.....+.++ ++....
T Consensus 146 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (368)
T 3mmy_A 146 TGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQ 225 (368)
T ss_dssp EEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTT
T ss_pred EccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCC
Confidence 7664 5 999998765443332222221111 111000
Q ss_pred ---ceEEEE-EcCeEEEEEEcCCCceeEeeeecCC-------------CCceEEEec--CCeEEEEEc-CceEEEEcCCC
Q 003405 127 ---GFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVP-------------DTVKSMSWC--GENICIAIR-KGYMILNATNG 186 (823)
Q Consensus 127 ---~~l~V~-~kkki~l~~~~~~~~f~~~kei~~~-------------~~~~~l~~~--~~~i~v~~~-~~y~lidl~~~ 186 (823)
..++++ ..+.+.+|.+...........+... ..+.+++|. ++.++.|.. ....++|+.++
T Consensus 226 ~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 226 NKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp SCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred CCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 014444 4455667766533110111111111 168899997 456777776 45789999988
Q ss_pred CeeeccCCCCCCCCEEEEccCCeEEEE
Q 003405 187 ALSEVFPSGRIGPPLVVSLLSGELLLG 213 (823)
Q Consensus 187 ~~~~L~~~~~~~~p~i~~~~~~EfLL~ 213 (823)
+....+......--.+...+++.+|++
T Consensus 306 ~~~~~~~~~~~~v~~~~~s~~g~~l~~ 332 (368)
T 3mmy_A 306 TKLKTSEQLDQPISACCFNHNGNIFAY 332 (368)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSCEEE
T ss_pred cEEEEecCCCCCceEEEECCCCCeEEE
Confidence 765554432211112334466666653
No 109
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0038 Score=69.04 Aligned_cols=159 Identities=8% Similarity=0.000 Sum_probs=101.2
Q ss_pred CCcEEEEEEe----CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCC-CCCCeeEEEEecccCce
Q 003405 16 SPKIDAVASY----GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGF-SKKPILSMEVLASRQLL 90 (823)
Q Consensus 16 ~~~I~ci~~~----~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~-~k~~I~qI~~~~~~~~L 90 (823)
...+.|+... ++.++.|+.+|.|.+|++.... ....+... +..+|..+...|..+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------------------~~~~~~~~~h~~~v~~~~~s~~~~~l 229 (437)
T 3gre_A 168 NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE------------------RLQIIENSPRHGAVSSICIDEECCVL 229 (437)
T ss_dssp CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC------------------EEEEEECCGGGCCEEEEEECTTSCEE
T ss_pred ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe------------------eeEEEccCCCCCceEEEEECCCCCEE
Confidence 3467777754 6799999999999999976421 23333332 35799999999998888
Q ss_pred eeEeC-c-EEEEeCCCCcccccc--cCCCCcEEEEeeCC----CceEEEEE-cCeEEEEEEcCCCceeEeee--------
Q 003405 91 LSLSE-S-IAFHRLPNLETIAVL--TKAKGANVYSWDDR----RGFLCFAR-QKRVCIFRHDGGRGFVEVKD-------- 153 (823)
Q Consensus 91 l~l~d-~-l~~~~L~~l~~~~~i--~~~kg~~~fa~~~~----~~~l~V~~-kkki~l~~~~~~~~f~~~ke-------- 153 (823)
++-+. + |.+|++.+.+.+..+ .....++.+++.+. ...++.+. .+.|.+|....++....+..
T Consensus 230 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 309 (437)
T 3gre_A 230 ILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSME 309 (437)
T ss_dssp EEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGG
T ss_pred EEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccc
Confidence 87775 5 999999876655443 23335667766543 22456664 45577887764321121110
Q ss_pred -e---------------cCCCCceEEEecCCe-EEEEEc-CceEEEEcCCCCeeecc
Q 003405 154 -F---------------GVPDTVKSMSWCGEN-ICIAIR-KGYMILNATNGALSEVF 192 (823)
Q Consensus 154 -i---------------~~~~~~~~l~~~~~~-i~v~~~-~~y~lidl~~~~~~~L~ 192 (823)
+ .-...+.+++|.++. |+.|.. ....+.|+.+++....+
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 310 HFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp GGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred eecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEE
Confidence 0 012358888888654 444443 56788999988654433
No 110
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=97.26 E-value=0.056 Score=56.29 Aligned_cols=155 Identities=18% Similarity=0.202 Sum_probs=98.6
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecc--cCcee
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS--RQLLL 91 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~--~~~Ll 91 (823)
...|.|++.. ++.|+.|+.||.|.+|++.... ......+.++ ..+|..+...+. .++|+
T Consensus 9 ~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~----------------~~~~~~l~gH-~~~V~~v~~s~~~~g~~l~ 71 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET----------------HKLIDTLTGH-EGPVWRVDWAHPKFGTILA 71 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC----------------BCCCEEECCC-SSCEEEEEECCGGGCSEEE
T ss_pred cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC----------------cEEEEEEccc-cCCeEEEEecCCCcCCEEE
Confidence 4568887754 6799999999999999976421 1123344443 679999988753 56777
Q ss_pred eEeC-c-EEEEeCCCCc--cccccc-CCCCcEEEEeeCC--CceEEEE-EcCeEEEEEEcCCCceeEeeeecCCCCceEE
Q 003405 92 SLSE-S-IAFHRLPNLE--TIAVLT-KAKGANVYSWDDR--RGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSM 163 (823)
Q Consensus 92 ~l~d-~-l~~~~L~~l~--~~~~i~-~~kg~~~fa~~~~--~~~l~V~-~kkki~l~~~~~~~~f~~~kei~~~~~~~~l 163 (823)
+.+. + |++|++.+-+ ....+. ....+.+++++++ ...++++ ..+.|.+|.+..+.......--.-...+.++
T Consensus 72 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~ 151 (297)
T 2pm7_B 72 SCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151 (297)
T ss_dssp EEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEE
T ss_pred EEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceE
Confidence 7775 5 9999986432 222222 2346888888775 3356666 5577889988743212111111224578888
Q ss_pred EecC---------------CeEEEEEc-CceEEEEcCCCC
Q 003405 164 SWCG---------------ENICIAIR-KGYMILNATNGA 187 (823)
Q Consensus 164 ~~~~---------------~~i~v~~~-~~y~lidl~~~~ 187 (823)
+|.. ..++.|.. +...+.|+.++.
T Consensus 152 ~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~ 191 (297)
T 2pm7_B 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (297)
T ss_dssp EECCCC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred eecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence 8864 35666665 457888887654
No 111
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=97.25 E-value=0.012 Score=64.03 Aligned_cols=153 Identities=10% Similarity=0.133 Sum_probs=101.2
Q ss_pred CcEEEEEEe---CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 17 PKIDAVASY---GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 17 ~~I~ci~~~---~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
..|.|++.. ++.++.|+.||.|.+|++..... ..+.+.+ +..+|..+...|..+.+++-
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-----------------~~~~~~~-h~~~v~~v~~~p~~~~l~s~ 267 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR-----------------AVRTYHG-HEGDINSVKFFPDGQRFGTG 267 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC-----------------CCEEECC-CSSCCCEEEECTTSSEEEEE
T ss_pred cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc-----------------ceEEECC-cCCCeEEEEEecCCCeEEEE
Confidence 467777764 46899999999999999763211 1233333 36789999999998888888
Q ss_pred eC-c-EEEEeCCCCccccccc--------CCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeee--cCCCCc
Q 003405 94 SE-S-IAFHRLPNLETIAVLT--------KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDF--GVPDTV 160 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~~~~~i~--------~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei--~~~~~~ 160 (823)
++ + |++|++.+-+...... ....++.++++++...++++ ..+.|.+|....++....+..+ .-.+.|
T Consensus 268 s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v 347 (380)
T 3iz6_a 268 SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRI 347 (380)
T ss_dssp CSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCC
T ss_pred cCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCce
Confidence 76 4 9999997654332211 11236788888877777777 4566777776533322222221 124678
Q ss_pred eEEEec--CCeEEEEEc-CceEEEEcCCCC
Q 003405 161 KSMSWC--GENICIAIR-KGYMILNATNGA 187 (823)
Q Consensus 161 ~~l~~~--~~~i~v~~~-~~y~lidl~~~~ 187 (823)
.+++|. |..|+.|.. ....+.++.+++
T Consensus 348 ~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 348 SCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 999997 456776665 456777877653
No 112
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.20 E-value=0.03 Score=60.38 Aligned_cols=188 Identities=10% Similarity=0.051 Sum_probs=106.0
Q ss_pred CCcEEEEEEeC-----CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCc-
Q 003405 16 SPKIDAVASYG-----LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQL- 89 (823)
Q Consensus 16 ~~~I~ci~~~~-----~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~- 89 (823)
+..+.|+.... ..+++|+.+|.|.+|++.... ....+.. +..+|..+...|..+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~------------------~~~~~~~-~~~~v~~~~~~~~~~~l 201 (408)
T 4a11_B 141 EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS------------------CSHILQG-HRQEILAVSWSPRYDYI 201 (408)
T ss_dssp SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC------------------CCEEECC-CCSCEEEEEECSSCTTE
T ss_pred CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc------------------eeeeecC-CCCcEEEEEECCCCCcE
Confidence 34566655542 389999999999999976422 1223332 3578999999998875
Q ss_pred eeeEeC-c-EEEEeCCCCcc-ccc----------------ccCCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCcee
Q 003405 90 LLSLSE-S-IAFHRLPNLET-IAV----------------LTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFV 149 (823)
Q Consensus 90 Ll~l~d-~-l~~~~L~~l~~-~~~----------------i~~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~ 149 (823)
+++.+. + |.+|++.+... ... ......++.++++++...++++ ..+.|.+|....++...
T Consensus 202 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 281 (408)
T 4a11_B 202 LATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTL 281 (408)
T ss_dssp EEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCC
T ss_pred EEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccce
Confidence 555554 4 99999865331 110 1223467888888877677776 45678888876442211
Q ss_pred Eeee--ecC--CCCceEEEec--CCeEEEEEcCceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-Ee-CCeEEEE
Q 003405 150 EVKD--FGV--PDTVKSMSWC--GENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-GK-ENIGVFV 221 (823)
Q Consensus 150 ~~ke--i~~--~~~~~~l~~~--~~~i~v~~~~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~~-~~~gvfv 221 (823)
.... ... .......... +..++.+..+...++|+.+++....+......-..+...+++.+|+ +. |+...+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 361 (408)
T 4a11_B 282 VNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361 (408)
T ss_dssp CCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEE
Confidence 1111 111 1111111111 2345555667788999988876554442221111233445666655 22 3344444
Q ss_pred c
Q 003405 222 D 222 (823)
Q Consensus 222 ~ 222 (823)
+
T Consensus 362 ~ 362 (408)
T 4a11_B 362 V 362 (408)
T ss_dssp E
T ss_pred e
Confidence 4
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=97.19 E-value=0.026 Score=62.48 Aligned_cols=156 Identities=10% Similarity=0.168 Sum_probs=99.5
Q ss_pred CCcEEEEEEeC--C-EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEec-ccCcee
Q 003405 16 SPKIDAVASYG--L-KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLA-SRQLLL 91 (823)
Q Consensus 16 ~~~I~ci~~~~--~-~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~-~~~~Ll 91 (823)
...|.|++... . .|+.|+.+|.|.+|++...... .........+.+ +..+|..+...| ..++++
T Consensus 181 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~ 248 (430)
T 2xyi_A 181 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-----------HRVIDAKNIFTG-HTAVVEDVAWHLLHESLFG 248 (430)
T ss_dssp SSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBG-----------GGEEECSEEECC-CSSCEEEEEECSSCTTEEE
T ss_pred CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCC-----------CceeccceeecC-CCCCEeeeEEeCCCCCEEE
Confidence 34677777653 3 8999999999999998753211 011111223332 367899999999 455666
Q ss_pred eEeC-c-EEEEeCCCC---cccccc-cCCCCcEEEEeeCCCc-eEEEE-EcCeEEEEEEcCCCceeEeeeec-CCCCceE
Q 003405 92 SLSE-S-IAFHRLPNL---ETIAVL-TKAKGANVYSWDDRRG-FLCFA-RQKRVCIFRHDGGRGFVEVKDFG-VPDTVKS 162 (823)
Q Consensus 92 ~l~d-~-l~~~~L~~l---~~~~~i-~~~kg~~~fa~~~~~~-~l~V~-~kkki~l~~~~~~~~f~~~kei~-~~~~~~~ 162 (823)
+.++ + |.+|++.+. .+...+ ....++++++++++.. .++++ ..+.|.+|.+..... .+..+. -.+.+.+
T Consensus 249 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--~~~~~~~h~~~v~~ 326 (430)
T 2xyi_A 249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL--KLHSFESHKDEIFQ 326 (430)
T ss_dssp EEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--CSEEEECCSSCEEE
T ss_pred EEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--CeEEeecCCCCEEE
Confidence 6654 5 999999764 333333 2345788899988765 46666 456788888774221 122222 3568999
Q ss_pred EEec--CCe-EEEEEc-CceEEEEcCC
Q 003405 163 MSWC--GEN-ICIAIR-KGYMILNATN 185 (823)
Q Consensus 163 l~~~--~~~-i~v~~~-~~y~lidl~~ 185 (823)
++|. +.. ++.|.. +...++|+.+
T Consensus 327 i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 327 VQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred EEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 9998 333 555554 5688899876
No 114
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.17 E-value=0.12 Score=54.40 Aligned_cols=218 Identities=13% Similarity=0.095 Sum_probs=132.3
Q ss_pred CCeeEEEEecccCceeeEe--------Cc-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEEc--CeEEEEEEcC
Q 003405 76 KPILSMEVLASRQLLLSLS--------ES-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQ--KRVCIFRHDG 144 (823)
Q Consensus 76 ~~I~qI~~~~~~~~Ll~l~--------d~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~k--kki~l~~~~~ 144 (823)
..+..+.+.+..+.+++.+ ++ |.+|++.+.+....+........++++++...++|+.. +.|.+|....
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 120 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT 120 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCC
Confidence 4677888899888887776 43 99999887765555544455667788887777777755 5566665543
Q ss_pred CCceeEeeeecCCC----------CceEEEec--CCeEEEEE---cCceEEEEcCCCCeeeccC-CCCCCCCEEEEccCC
Q 003405 145 GRGFVEVKDFGVPD----------TVKSMSWC--GENICIAI---RKGYMILNATNGALSEVFP-SGRIGPPLVVSLLSG 208 (823)
Q Consensus 145 ~~~f~~~kei~~~~----------~~~~l~~~--~~~i~v~~---~~~y~lidl~~~~~~~L~~-~~~~~~p~i~~~~~~ 208 (823)
++ ..+.+..++ .|.+++|. |+.++++. .....++|+.+++....++ .+.... .+...+++
T Consensus 121 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~s~dg 196 (353)
T 3vgz_A 121 GE---VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMST-GLALDSEG 196 (353)
T ss_dssp CC---EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCC-CCEEETTT
T ss_pred Ce---eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccc-eEEECCCC
Confidence 32 223333322 37888886 56788887 3458899999988776666 333211 23334566
Q ss_pred eEEE-E-eCCeEEEEcC-CCccccCCceee-----cCCCcEEEEe--CCEEEEEeC--CeEEEEEccCCCceeEEEeeCC
Q 003405 209 ELLL-G-KENIGVFVDQ-NGKLLQADRICW-----SEAPIAVIIQ--KPYAIALLP--RRVEVRSLRVPYALIQTIVLQN 276 (823)
Q Consensus 209 EfLL-~-~~~~gvfv~~-~G~~~~~~~i~w-----~~~P~~v~~~--~PYll~~~~--~~ieV~~l~~~~~lvQ~i~l~~ 276 (823)
..+. + .++....+|. .|+.. ..+.. ...|..+++. ..++++... +.|.++++. ++..++.+....
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~~~~~ 273 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNKIL--SRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR-NGNILAKVAAPE 273 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTEEE--EEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT-TCCEEEEEECSS
T ss_pred CEEEEEcCCCeEEEEECCCCeEE--EEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEEEEcCC
Confidence 6554 3 3344555664 33322 22222 1123445665 456666654 578889986 578888888766
Q ss_pred cccc--cccCCeEEEec--cceEEEeec
Q 003405 277 VRHL--IPSSNAVVVAL--ENSIFGLFP 300 (823)
Q Consensus 277 ~~~l--~~~~~~v~v~s--~~~I~~l~~ 300 (823)
...+ .+.++.+|++. ++.|+.+..
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 5333 23445566665 356666543
No 115
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.066 Score=56.74 Aligned_cols=158 Identities=16% Similarity=0.185 Sum_probs=99.3
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
...|.|++.. ++.|+.|+.||.|.+|+....... .........+.+ +..+|..+..-|..+.|++.
T Consensus 58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~-----------~~~~~~~~~~~~-h~~~V~~v~~sp~g~~las~ 125 (330)
T 2hes_X 58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR-----------TFEMDLLAIIEG-HENEVKGVAWSNDGYYLATC 125 (330)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEEC------------------CCCEEEEEEC-----CEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc-----------cccceeEEEEcC-CCCcEEEEEECCCCCEEEEE
Confidence 3468888765 468999999999999997542210 011223334443 36789999999998888888
Q ss_pred eC-c-EEEEeCCC----Cccccccc-CCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeec-CCCCceEEE
Q 003405 94 SE-S-IAFHRLPN----LETIAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFG-VPDTVKSMS 164 (823)
Q Consensus 94 ~d-~-l~~~~L~~----l~~~~~i~-~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~-~~~~~~~l~ 164 (823)
+. + |++|++.. .+.+..+. ....++.++.+++...++.+ ..+.|.++....+ .+..+..+. -.+.+.+++
T Consensus 126 s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~-~~~~~~~~~~h~~~v~~~~ 204 (330)
T 2hes_X 126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD-DWECVAVLNGHEGTVWSSD 204 (330)
T ss_dssp ETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEE
T ss_pred eCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-CeeEEEEccCCCCcEEEEE
Confidence 75 4 99999842 22222222 23467888888877677776 4577888887633 233333332 245788999
Q ss_pred ecCC----eEEEEEc-CceEEEEcCCC
Q 003405 165 WCGE----NICIAIR-KGYMILNATNG 186 (823)
Q Consensus 165 ~~~~----~i~v~~~-~~y~lidl~~~ 186 (823)
|..+ .++.|.. +...+.|+.++
T Consensus 205 ~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 205 FDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp ECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred ecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 9743 4666655 55777887653
No 116
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.96 E-value=0.029 Score=59.98 Aligned_cols=151 Identities=17% Similarity=0.257 Sum_probs=102.7
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
...|+|++.. ++.|+.|+.||.+.+|+.... .......+.+ +..+|..+...|..++|++.
T Consensus 61 ~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~----------------~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~ 123 (345)
T 3fm0_A 61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQD----------------DFECVTTLEG-HENEVKSVAWAPSGNLLATC 123 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-----------------EEEEEEECC-CSSCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEECCCcEEEEEccCC----------------CeEEEEEccC-CCCCceEEEEeCCCCEEEEE
Confidence 4578888765 579999999999999986532 1223334443 36789999999998988888
Q ss_pred eC-c-EEEEeCCCCcc---cccc-cCCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEeeeec-CCCCceEEEe
Q 003405 94 SE-S-IAFHRLPNLET---IAVL-TKAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFG-VPDTVKSMSW 165 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~~---~~~i-~~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kei~-~~~~~~~l~~ 165 (823)
+. + |.+|++.+-.. +..+ .....++.++.+++...++.+. .+.|.+|....+ .+.....+. -.+.|.+++|
T Consensus 124 s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~-~~~~~~~~~~h~~~v~~l~~ 202 (345)
T 3fm0_A 124 SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED-DWVCCATLEGHESTVWSLAF 202 (345)
T ss_dssp ETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEE
T ss_pred ECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCC-CEEEEEEecCCCCceEEEEE
Confidence 75 4 99999865432 2222 1234678888888777777774 567889887744 233233332 2468899999
Q ss_pred c--CCeEEEEEc-CceEEEEcC
Q 003405 166 C--GENICIAIR-KGYMILNAT 184 (823)
Q Consensus 166 ~--~~~i~v~~~-~~y~lidl~ 184 (823)
. |..|+.|.. +...+.|..
T Consensus 203 sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 203 DPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEeccc
Confidence 7 456777766 456677753
No 117
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.96 E-value=0.056 Score=58.59 Aligned_cols=194 Identities=8% Similarity=0.045 Sum_probs=112.1
Q ss_pred cEEEEEEe---CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEec-ccCceeeE
Q 003405 18 KIDAVASY---GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLA-SRQLLLSL 93 (823)
Q Consensus 18 ~I~ci~~~---~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~-~~~~Ll~l 93 (823)
.|.|+... +..|+.|+.||.+.+|++..... ...+...+..-+...|..+...+ ..+++++-
T Consensus 159 ~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~--------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg 224 (380)
T 3iz6_a 159 YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR--------------ISIFGSEFPSGHTADVLSLSINSLNANMFISG 224 (380)
T ss_dssp CCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE--------------EEEECCCSSSSCCSCEEEEEECSSSCCEEEEE
T ss_pred ceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE--------------EEEeecccCCCCccCeEEEEeecCCCCEEEEE
Confidence 35554443 34799999999999999764321 00000011112356788888876 45667766
Q ss_pred eC-c-EEEEeCCCC-ccccccc-CCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeee-e----cCCCCceEE
Q 003405 94 SE-S-IAFHRLPNL-ETIAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKD-F----GVPDTVKSM 163 (823)
Q Consensus 94 ~d-~-l~~~~L~~l-~~~~~i~-~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~ke-i----~~~~~~~~l 163 (823)
+. + |++|++..- +.+..+. ....+++++++++...++.+ ..+.|.+|....+........ - .....+.++
T Consensus 225 s~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 304 (380)
T 3iz6_a 225 SCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV 304 (380)
T ss_dssp ETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEE
T ss_pred ECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEE
Confidence 64 4 999998632 2222222 23468888898887777776 556788888764432221111 0 011247888
Q ss_pred Eec--CCeEEEEEc-CceEEEEcCCCCeeeccC---CC-CCCCCEEEEccCCeEEEE--eCCeEEEEcCCC
Q 003405 164 SWC--GENICIAIR-KGYMILNATNGALSEVFP---SG-RIGPPLVVSLLSGELLLG--KENIGVFVDQNG 225 (823)
Q Consensus 164 ~~~--~~~i~v~~~-~~y~lidl~~~~~~~L~~---~~-~~~~p~i~~~~~~EfLL~--~~~~gvfv~~~G 225 (823)
+|. |..++.|.. ....+.|+.+++...-+. .+ ...--++...+++.+|++ .|+...+.+..|
T Consensus 305 ~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 305 AFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 887 567888876 457888988776533221 11 111234445567777763 244444555544
No 118
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=96.95 E-value=0.83 Score=52.83 Aligned_cols=232 Identities=15% Similarity=0.171 Sum_probs=139.1
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
...|+|++.. ++.|..|+.||.|.+|++..... .+...+..+ ..+|..+...|....+++.
T Consensus 59 ~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~----------------~~~~~~~~~-~~~v~~v~fs~dg~~l~~~ 121 (611)
T 1nr0_A 59 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH----------------ILKTTIPVF-SGPVKDISWDSESKRIAAV 121 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC----------------CEEEEEECS-SSCEEEEEECTTSCEEEEE
T ss_pred CCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc----------------eeeEeeccc-CCceEEEEECCCCCEEEEE
Confidence 3468887764 57999999999999999753211 112233333 5789999999999888888
Q ss_pred eCc------EEEEeCCCCcccccc-cCCCCcEEEEeeCCCc-eEEEE-EcCeEEEEEEcCCCceeEeeeec-CCCCceEE
Q 003405 94 SES------IAFHRLPNLETIAVL-TKAKGANVYSWDDRRG-FLCFA-RQKRVCIFRHDGGRGFVEVKDFG-VPDTVKSM 163 (823)
Q Consensus 94 ~d~------l~~~~L~~l~~~~~i-~~~kg~~~fa~~~~~~-~l~V~-~kkki~l~~~~~~~~f~~~kei~-~~~~~~~l 163 (823)
+++ |.+|+..+ ....+ .....+++++.+++.. .++.+ ..+.+.+|.... ++..+.+. -.+.|.++
T Consensus 122 ~~~~~~~~~v~~wd~~~--~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~---~~~~~~l~~H~~~V~~v 196 (611)
T 1nr0_A 122 GEGRERFGHVFLFDTGT--SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP---FKFKSTFGEHTKFVHSV 196 (611)
T ss_dssp ECCSSCSEEEEETTTCC--BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT---BEEEEEECCCSSCEEEE
T ss_pred ECCCCceeEEEEeeCCC--CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC---CeEeeeeccccCceEEE
Confidence 752 55555432 22222 2335688888888765 46666 456787877542 22233332 23578999
Q ss_pred Eec--CCeEEEEEc-CceEEEEcCCCCeeeccCC------CCCCCC-EEEEccCCeEEE-E-eCCeEEEEcCC-CccccC
Q 003405 164 SWC--GENICIAIR-KGYMILNATNGALSEVFPS------GRIGPP-LVVSLLSGELLL-G-KENIGVFVDQN-GKLLQA 230 (823)
Q Consensus 164 ~~~--~~~i~v~~~-~~y~lidl~~~~~~~L~~~------~~~~~p-~i~~~~~~EfLL-~-~~~~gvfv~~~-G~~~~~ 230 (823)
+|. |..++.|.. ....+.|+.+++....+.. +-.... .+...+++.+|+ + .|+...+.|.. |+..
T Consensus 197 ~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~-- 274 (611)
T 1nr0_A 197 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE-- 274 (611)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--
T ss_pred EECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee--
Confidence 997 456666666 5678899998876554421 111111 234457778777 3 34555566653 4332
Q ss_pred Cceeec----CCCcEEEEeCCEEEEEeC-CeEEEEEccCCCceeEEE
Q 003405 231 DRICWS----EAPIAVIIQKPYAIALLP-RRVEVRSLRVPYALIQTI 272 (823)
Q Consensus 231 ~~i~w~----~~P~~v~~~~PYll~~~~-~~ieV~~l~~~~~lvQ~i 272 (823)
.++.-. .....+.+...++++... +.+.+++.. .+...+++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~-~~~~~~~~ 320 (611)
T 1nr0_A 275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE-LGSIDQVR 320 (611)
T ss_dssp EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT-TTEEEEEE
T ss_pred eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCC-CCCcceEE
Confidence 122211 122345556667777765 578888875 35544444
No 119
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=96.95 E-value=0.18 Score=54.34 Aligned_cols=232 Identities=12% Similarity=0.098 Sum_probs=128.2
Q ss_pred CCcEEEEEEeCCEEEEEeCC-----------CcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCC----CCCCeeE
Q 003405 16 SPKIDAVASYGLKILLGCSD-----------GSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGF----SKKPILS 80 (823)
Q Consensus 16 ~~~I~ci~~~~~~L~vGT~~-----------G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~----~k~~I~q 80 (823)
...+.|++..++.++.|.++ +.+..|++..... ........... ....+.-
T Consensus 73 ~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 138 (365)
T 4h5i_A 73 DDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVND--------------QLEFLTSVDFDASTNADDYTKL 138 (365)
T ss_dssp SCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTT--------------EEEEEEEECSSCCCCTTCCEEE
T ss_pred CCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCc--------------eEEEeeeeceeecCCcccCEEE
Confidence 34678999999999998764 4555665443211 11111111111 1123566
Q ss_pred EEEecccCceeeEeC---c-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEeeeecC
Q 003405 81 MEVLASRQLLLSLSE---S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGV 156 (823)
Q Consensus 81 I~~~~~~~~Ll~l~d---~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kei~~ 156 (823)
+..-|+..++++.+. + |++|++.+.+.+..+.....|..++++++...++.+..+++.++....+..........-
T Consensus 139 v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~ 218 (365)
T 4h5i_A 139 VYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDK 218 (365)
T ss_dssp EEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCT
T ss_pred EEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCC
Confidence 777788777776652 4 999999988777666656678899999988788888888887776553321111111122
Q ss_pred CCCceEEEec--CCeEEEEEcCc-----eEEEEcCCCCeeec--cCCCCCCCCE--EEEccCCeEEE-Ee-CCeEEEEcC
Q 003405 157 PDTVKSMSWC--GENICIAIRKG-----YMILNATNGALSEV--FPSGRIGPPL--VVSLLSGELLL-GK-ENIGVFVDQ 223 (823)
Q Consensus 157 ~~~~~~l~~~--~~~i~v~~~~~-----y~lidl~~~~~~~L--~~~~~~~~p~--i~~~~~~EfLL-~~-~~~gvfv~~ 223 (823)
.+.+.+++|. |..++.+...+ ....|+.++..... ........++ +...+++.+|. +. |+...+.|.
T Consensus 219 ~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~ 298 (365)
T 4h5i_A 219 NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKL 298 (365)
T ss_dssp TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEEC
Confidence 3467888887 34555555432 34455555432211 1111111232 33446777766 33 444555554
Q ss_pred -CCccccCCce-ee-cCCCcEEEEe--CCEEEEEeC-CeEEEEEcc
Q 003405 224 -NGKLLQADRI-CW-SEAPIAVIIQ--KPYAIALLP-RRVEVRSLR 263 (823)
Q Consensus 224 -~G~~~~~~~i-~w-~~~P~~v~~~--~PYll~~~~-~~ieV~~l~ 263 (823)
+|++.+ .+ .= ......++|. ..||+..+. +.|-|+++.
T Consensus 299 ~~~~~~~--~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 299 KDLSMSK--IFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp TTTEEEE--EETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred CCCcEEE--EecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 344321 11 10 1223445553 346766664 578888774
No 120
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=96.94 E-value=0.33 Score=55.59 Aligned_cols=250 Identities=11% Similarity=0.067 Sum_probs=146.6
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC-c-EEEEeC-
Q 003405 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-S-IAFHRL- 102 (823)
Q Consensus 26 ~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d-~-l~~~~L- 102 (823)
+..++.+..+|.|.+|+.... ++...+.. ...+..+.+.|..+.|++.+. + |.+|++
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~------------------~~~~~i~~--g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~ 208 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSK------------------KIVKVIDT--GYAVHISRMSASGRYLLVIGRDARIDMIDLW 208 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTC------------------CEEEEEEC--STTEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEECCCc------------------eEEEEEec--CcccceEEECCCCCEEEEECCCCeEEEEECc
Confidence 345566778899999975421 22334331 223777888888888888875 4 999999
Q ss_pred -CCCcccccccCCCCcEEEEeeC----CCceEEEEE--cCeEEEEEEcCCCceeEeeeecC-----------CC-CceEE
Q 003405 103 -PNLETIAVLTKAKGANVYSWDD----RRGFLCFAR--QKRVCIFRHDGGRGFVEVKDFGV-----------PD-TVKSM 163 (823)
Q Consensus 103 -~~l~~~~~i~~~kg~~~fa~~~----~~~~l~V~~--kkki~l~~~~~~~~f~~~kei~~-----------~~-~~~~l 163 (823)
.+.+.+..+....+...+++++ +...++|+. ...|.++.... .+.++.+.. |+ .+.++
T Consensus 209 ~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t---~~~~~~i~~~g~~~~~~~~~~~~~v~~i 285 (543)
T 1nir_A 209 AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET---LEPKQIVSTRGMTVDTQTYHPEPRVAAI 285 (543)
T ss_dssp SSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT---CCEEEEEECCEECSSSCCEESCCCEEEE
T ss_pred CCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc---cccceeecccCcccCccccccCCceEEE
Confidence 6777666666556677888888 777788874 57888886542 233444433 22 56677
Q ss_pred Eec--CCeEEEEEc--CceEEEEcCCCCeee--ccCCCCCCCCEEEEccCCeEEE-Ee--CCeEEEEcC-CCccccCCce
Q 003405 164 SWC--GENICIAIR--KGYMILNATNGALSE--VFPSGRIGPPLVVSLLSGELLL-GK--ENIGVFVDQ-NGKLLQADRI 233 (823)
Q Consensus 164 ~~~--~~~i~v~~~--~~y~lidl~~~~~~~--L~~~~~~~~p~i~~~~~~EfLL-~~--~~~gvfv~~-~G~~~~~~~i 233 (823)
.+. +..++++.. ....++|..+++... .++.+... .-+...+++.+++ +. ++....+|. +|+.. ..+
T Consensus 286 ~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~-~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~--~~i 362 (543)
T 1nir_A 286 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFL-HDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS--ALV 362 (543)
T ss_dssp EECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSC-CCEEECTTSCEEEEEEGGGTEEEEEETTTTEEE--EEE
T ss_pred EECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCc-cCceECCCCCEEEEEecCCCeEEEEECCCCeEE--Eee
Confidence 776 456666665 457788888764322 22333211 1244456777655 43 344455664 45433 223
Q ss_pred eecCCCc---EEEEeC---CEEEEEe---CCeEEEEEccCC-------CceeEEEeeCCcc--cc--cccCCeEEEec--
Q 003405 234 CWSEAPI---AVIIQK---PYAIALL---PRRVEVRSLRVP-------YALIQTIVLQNVR--HL--IPSSNAVVVAL-- 291 (823)
Q Consensus 234 ~w~~~P~---~v~~~~---PYll~~~---~~~ieV~~l~~~-------~~lvQ~i~l~~~~--~l--~~~~~~v~v~s-- 291 (823)
.=...|. ...+.. -.+++.. ++.|.|+++. + ...+|++...+.. .+ .+.++.+++++
T Consensus 363 ~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~-~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~ 441 (543)
T 1nir_A 363 DVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTD-PKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTF 441 (543)
T ss_dssp ECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC-TTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTT
T ss_pred ccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeC-CCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCC
Confidence 2222221 222221 2333332 4789999985 5 6789999876532 22 24456677765
Q ss_pred ------cceEEEeeccC
Q 003405 292 ------ENSIFGLFPVP 302 (823)
Q Consensus 292 ------~~~I~~l~~~~ 302 (823)
++.|..+....
T Consensus 442 ~~~~~~~~~v~v~d~~~ 458 (543)
T 1nir_A 442 NPDARISQSVAVFDLKN 458 (543)
T ss_dssp CSSHHHHTCEEEEETTC
T ss_pred CCCcccCceEEEEECCC
Confidence 34566555444
No 121
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=96.93 E-value=0.067 Score=57.76 Aligned_cols=184 Identities=12% Similarity=0.103 Sum_probs=109.0
Q ss_pred EEEEEeCCEEEEEe--CCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC-c
Q 003405 20 DAVASYGLKILLGC--SDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-S 96 (823)
Q Consensus 20 ~ci~~~~~~L~vGT--~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d-~ 96 (823)
.|+...|+.+++|+ .||+|.+|+.... +....+. +...|..|..-|...++++.++ +
T Consensus 139 v~fSpDg~~la~as~~~d~~i~iwd~~~~------------------~~~~~~~--~~~~V~~v~fspdg~~l~s~s~~~ 198 (365)
T 4h5i_A 139 VYISREGTVAAIASSKVPAIMRIIDPSDL------------------TEKFEIE--TRGEVKDLHFSTDGKVVAYITGSS 198 (365)
T ss_dssp EEECTTSSCEEEEESCSSCEEEEEETTTT------------------EEEEEEE--CSSCCCEEEECTTSSEEEEECSSC
T ss_pred EEEcCCCCEEEEEECCCCCEEEEeECCCC------------------cEEEEeC--CCCceEEEEEccCCceEEecccee
Confidence 34444567888877 5899999986532 1222332 2467999999999999988888 4
Q ss_pred EEEEeCCCCccccc-cc--CCCCcEEEEeeCCCceEEEEE-c--CeEEEEEEcC--CC-ceeEeeeec-CCCCceEEEec
Q 003405 97 IAFHRLPNLETIAV-LT--KAKGANVYSWDDRRGFLCFAR-Q--KRVCIFRHDG--GR-GFVEVKDFG-VPDTVKSMSWC 166 (823)
Q Consensus 97 l~~~~L~~l~~~~~-i~--~~kg~~~fa~~~~~~~l~V~~-k--kki~l~~~~~--~~-~f~~~kei~-~~~~~~~l~~~ 166 (823)
+.+|...+-+.... .. ....+..++..++...++.+. . ..+.+..|+. .. .....+.+. -...|++++|.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~S 278 (365)
T 4h5i_A 199 LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVD 278 (365)
T ss_dssp EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEEC
T ss_pred EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEEC
Confidence 77776654332221 11 112356677777766666653 2 2344555542 21 111222332 23578999997
Q ss_pred --CCeEEEEEc-CceEEEEcCCCCeeeccCCC-CCCCCEEEEccCCeEEE-Ee-CCeEEEEcC
Q 003405 167 --GENICIAIR-KGYMILNATNGALSEVFPSG-RIGPPLVVSLLSGELLL-GK-ENIGVFVDQ 223 (823)
Q Consensus 167 --~~~i~v~~~-~~y~lidl~~~~~~~L~~~~-~~~~p~i~~~~~~EfLL-~~-~~~gvfv~~ 223 (823)
|..|+.|.. ....++|+.+++...-+..+ ...--.+...+++.+|+ +. |+..-+.+.
T Consensus 279 pdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 279 MKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp TTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred CCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 557888877 46889999998765433222 11112345568888888 44 444444453
No 122
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=96.90 E-value=0.16 Score=55.66 Aligned_cols=185 Identities=10% Similarity=0.103 Sum_probs=108.0
Q ss_pred cEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC-c
Q 003405 18 KIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-S 96 (823)
Q Consensus 18 ~I~ci~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d-~ 96 (823)
.+.|+...+..|+.|..+|.+.+++..... .....+.+ +...|..+...+..+.+++.++ +
T Consensus 191 ~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~-----------------~~~~~~~~-h~~~~~~~~~~~~g~~l~s~~~D~ 252 (420)
T 4gga_A 191 RVGSLSWNSYILSSGSRSGHIHHHDVRVAE-----------------HHVATLSG-HSQEVCGLRWAPDGRHLASGGNDN 252 (420)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEETTSSS-----------------CEEEEEEC-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceEEEeeCCCEEEEEeCCCceeEeeecccc-----------------eeeEEecc-cccceeeeeecCCCCeeeeeeccc
Confidence 455555555556666666666655533211 11222332 3578999999998888888875 4
Q ss_pred -EEEEeCCCCcc----cccc-cCCCCcEEEEeeCCCc-eEEEEE---cCeEEEEEEcCCCceeEeeeecCCCCceEEEec
Q 003405 97 -IAFHRLPNLET----IAVL-TKAKGANVYSWDDRRG-FLCFAR---QKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC 166 (823)
Q Consensus 97 -l~~~~L~~l~~----~~~i-~~~kg~~~fa~~~~~~-~l~V~~---kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~ 166 (823)
+.+|+..+.+. .... .....+..++..+..+ .++++. .+.|.+|....+ .....+.....+.++.|.
T Consensus 253 ~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~~~~~v~~~~~~ 329 (420)
T 4gga_A 253 LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAHSQVCSILWS 329 (420)
T ss_dssp CEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEECSSCEEEEEEE
T ss_pred cceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeeccccceeeeeec
Confidence 99999865431 1111 2233567777776554 455543 467888877643 234445567788888887
Q ss_pred --CCeEEEEEc---CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-E-eCCeEEEEcC
Q 003405 167 --GENICIAIR---KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-G-KENIGVFVDQ 223 (823)
Q Consensus 167 --~~~i~v~~~---~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~-~~~~gvfv~~ 223 (823)
++.++++.. ....++|+.+++...-+.-....--.+...+++.+|+ | .|+..-+-+.
T Consensus 330 ~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 330 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp TTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred CCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 456777663 5688899988765444432111111233446777776 3 3445555554
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=96.89 E-value=0.12 Score=55.30 Aligned_cols=217 Identities=7% Similarity=0.018 Sum_probs=125.1
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
+..|.|++.. ++.|..|+.+| +.+|+.... ..... ..+ ..|..+...+..+.+++.
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~------------------~~~~~-~~~--~~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV------------------AHIMS-QEM--RHLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE------------------EEEEE-EEC--SCCCEEEECTTSSEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCE-EEEEecCCc------------------ceeee-eec--CCeEEEEEcCCCCEEEEE
Confidence 4678888765 46899999888 568885421 11111 112 247777777777777665
Q ss_pred eC--c-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEEcCeEEEEEEcCC-CceeEeeeecCCCCceEEEecCCe
Q 003405 94 SE--S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGG-RGFVEVKDFGVPDTVKSMSWCGEN 169 (823)
Q Consensus 94 ~d--~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~-~~f~~~kei~~~~~~~~l~~~~~~ 169 (823)
+. + |.+|++.+-+.+..+.....+..++.+++ .++++..+++.+|.+... +... .+..+..+.+++ .+.
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~~s--~~~ 149 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRIT---DDIRFGGVCEFS--NGL 149 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSS---CCEEEEEEEEEE--TTE
T ss_pred ECCccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeE---EeccCCceEEEE--ccE
Confidence 54 3 99999987666655554456777776643 577788999999988754 2222 222233333333 366
Q ss_pred EEEE--Ec-CceEEEEcCCCC-----------------eeeccCCCCCCCCEEEEccCCeEEE-Ee-CCe-EEEEcC-CC
Q 003405 170 ICIA--IR-KGYMILNATNGA-----------------LSEVFPSGRIGPPLVVSLLSGELLL-GK-ENI-GVFVDQ-NG 225 (823)
Q Consensus 170 i~v~--~~-~~y~lidl~~~~-----------------~~~L~~~~~~~~p~i~~~~~~EfLL-~~-~~~-gvfv~~-~G 225 (823)
++++ .. ....++|+.++. ...+... ...--.+...+++.+|+ +. |.. ..+.|. .|
T Consensus 150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h-~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~ 228 (355)
T 3vu4_A 150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH-TNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG 228 (355)
T ss_dssp EEEEESSCTTCEEEEECCC------------------CCEEECCC-SSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC
T ss_pred EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc-CCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 6664 33 567889998765 2222211 11111234456777777 33 443 555564 35
Q ss_pred ccccCCcee---ecCCCcEEEEe--CCEEEEEeC-CeEEEEEccC
Q 003405 226 KLLQADRIC---WSEAPIAVIIQ--KPYAIALLP-RRVEVRSLRV 264 (823)
Q Consensus 226 ~~~~~~~i~---w~~~P~~v~~~--~PYll~~~~-~~ieV~~l~~ 264 (823)
+.. ..+. -......+++. ..++++... +.|.|+++.+
T Consensus 229 ~~~--~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 229 VLV--REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp CEE--EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred cEE--EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 432 2333 22233455554 357777765 6899999863
No 124
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.041 Score=67.36 Aligned_cols=260 Identities=11% Similarity=0.150 Sum_probs=147.1
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceee--eeecCCCCCCeeEEEEecccCceeeEeC-c-EEEEe
Q 003405 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELE--RTISGFSKKPILSMEVLASRQLLLSLSE-S-IAFHR 101 (823)
Q Consensus 26 ~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~--~~~~~~~k~~I~qI~~~~~~~~Ll~l~d-~-l~~~~ 101 (823)
++.|+.|..||+|.+|++....... ...+... +....-+...|..+..-|....|++-+. + |++|+
T Consensus 447 g~~laSgs~DgtVrlWd~~~g~~~~----------~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd 516 (902)
T 2oaj_A 447 GTAFITGHSNGSVRIYDASHGDIQD----------NASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFK 516 (902)
T ss_dssp EEEEEEEETTSEEEEEESSCCTTTT----------TBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CcEEEEecCCCcEEEEECCCccccC----------CceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEE
Confidence 5689999999999999987542100 0111110 0000123568999999999888777765 5 99998
Q ss_pred CCCCc---------------------------------------------cccccc-CCCCcEEEEeeCCCceEEEEEc-
Q 003405 102 LPNLE---------------------------------------------TIAVLT-KAKGANVYSWDDRRGFLCFARQ- 134 (823)
Q Consensus 102 L~~l~---------------------------------------------~~~~i~-~~kg~~~fa~~~~~~~l~V~~k- 134 (823)
+.+.+ +...+. ....|++++.+++. .|++|..
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D 595 (902)
T 2oaj_A 517 YEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAA 595 (902)
T ss_dssp EEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETT
T ss_pred ecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCC
Confidence 75321 111222 23467788888877 8898855
Q ss_pred CeEEEEEEcCCCcee---Eeeeec--CCCCceEEEec-----CC-----eEEEEEc-CceEEEEc---CCCCeeeccCCC
Q 003405 135 KRVCIFRHDGGRGFV---EVKDFG--VPDTVKSMSWC-----GE-----NICIAIR-KGYMILNA---TNGALSEVFPSG 195 (823)
Q Consensus 135 kki~l~~~~~~~~f~---~~kei~--~~~~~~~l~~~-----~~-----~i~v~~~-~~y~lidl---~~~~~~~L~~~~ 195 (823)
+.|.||...+. ... ..+++. -.+.|++++|. ++ .|+.|+. ....++|+ .+|+....+...
T Consensus 596 ~tv~lwd~~~~-~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~ 674 (902)
T 2oaj_A 596 GSLMLIDRRGP-AIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDI 674 (902)
T ss_dssp SEEEEEETTTT-EEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEE
T ss_pred CcEEEEECCCC-eEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCc
Confidence 56888887633 221 112332 24579999998 54 5777776 45778888 566532222100
Q ss_pred ---CCCCCE--EEEc-----------------------cCCeEEEEeCCeEEEEc-CCCccccCCceeecCCC--cEE--
Q 003405 196 ---RIGPPL--VVSL-----------------------LSGELLLGKENIGVFVD-QNGKLLQADRICWSEAP--IAV-- 242 (823)
Q Consensus 196 ---~~~~p~--i~~~-----------------------~~~EfLL~~~~~gvfv~-~~G~~~~~~~i~w~~~P--~~v-- 242 (823)
+...|+ +.++ .++-+|+|.++..-.++ ..|+..+ ..|...- ..+
T Consensus 675 ~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~~~k~~~---k~~~~~~~~~~v~~ 751 (902)
T 2oaj_A 675 TNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLGKSKSTH---KGFKYPLAATGLSY 751 (902)
T ss_dssp EECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEECTTCCCEEE---EECSSCEEEEEEEE
T ss_pred eecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEeccceEEEeCcccccee---eEcccceeeeEEEE
Confidence 000111 1111 23345556655443333 4565542 1244331 112
Q ss_pred -E--------EeCCEEEEEeC-CeEEEEEccCCCceeEEEeeCCcc--------cccccCCeEEEeccceEEEeecc
Q 003405 243 -I--------IQKPYAIALLP-RRVEVRSLRVPYALIQTIVLQNVR--------HLIPSSNAVVVALENSIFGLFPV 301 (823)
Q Consensus 243 -~--------~~~PYll~~~~-~~ieV~~l~~~~~lvQ~i~l~~~~--------~l~~~~~~v~v~s~~~I~~l~~~ 301 (823)
. -....|++++. +.|+|+++. +...+++..++... .+...|..++.+++.++.++...
T Consensus 752 ~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p-~l~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~~~~~~~ 827 (902)
T 2oaj_A 752 ISTVEKNNDRKNLTVIITLEINGHLRVFTIP-DFKEQMSEHIPFPIAAKYITESSVLRNGDIAIRVSEFQASLFSTV 827 (902)
T ss_dssp EEEECSSSCEEEEEEEEEEETTSEEEEEETT-TCCEEEEEECSSCCCHHHHTTCEECTTSCEEEECSSSEEEEEEEE
T ss_pred EEeccccccccCceEEEEEeCCCcEEEEECc-chHHHhhccCCcccccccccceEEcCCCCEEEEeChhheEEEEEE
Confidence 1 11345555554 689999997 48888888876531 12234556666777777666533
No 125
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.85 E-value=0.24 Score=51.80 Aligned_cols=220 Identities=10% Similarity=0.042 Sum_probs=128.7
Q ss_pred eCCEEEEEeC-CCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeCc-----EE
Q 003405 25 YGLKILLGCS-DGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSES-----IA 98 (823)
Q Consensus 25 ~~~~L~vGT~-~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d~-----l~ 98 (823)
.++++|++.. +|.|.+|+..... . ...... .+..++..+.+.|..+.+++..++ |.
T Consensus 50 dg~~l~~~~~~~~~i~~~d~~~~~----------------~-~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~ 111 (331)
T 3u4y_A 50 DCSNVVVTSDFCQTLVQIETQLEP----------------P-KVVAIQ-EGQSSMADVDITPDDQFAVTVTGLNHPFNMQ 111 (331)
T ss_dssp SSCEEEEEESTTCEEEEEECSSSS----------------C-EEEEEE-ECSSCCCCEEECTTSSEEEECCCSSSSCEEE
T ss_pred CCCEEEEEeCCCCeEEEEECCCCc----------------e-eEEecc-cCCCCccceEECCCCCEEEEecCCCCcccEE
Confidence 3567888877 8899999865321 0 012222 123444448888988887744432 89
Q ss_pred EEeCCCCcccccccCCCCcEEEEeeCCCceEEEEEc--Ce-EEEEEEcCCCceeEe--eeecCCCCceEEEec--CCeEE
Q 003405 99 FHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQ--KR-VCIFRHDGGRGFVEV--KDFGVPDTVKSMSWC--GENIC 171 (823)
Q Consensus 99 ~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~k--kk-i~l~~~~~~~~f~~~--kei~~~~~~~~l~~~--~~~i~ 171 (823)
+|++.+.+....+....+.+.++++++...++++.. .. +.+|.+..+...... +.+.....|.+++|. |+.++
T Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 191 (331)
T 3u4y_A 112 SYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAF 191 (331)
T ss_dssp EEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEE
T ss_pred EEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEE
Confidence 999987765555555566788889888766766632 56 899998754333222 234445678999997 45688
Q ss_pred EEEc--CceEEEEcCCCCe---eeccCCCCCCCCEEEEccCCeEEE-Ee--CCeEEEEcCC-CccccCCc----eeecCC
Q 003405 172 IAIR--KGYMILNATNGAL---SEVFPSGRIGPPLVVSLLSGELLL-GK--ENIGVFVDQN-GKLLQADR----ICWSEA 238 (823)
Q Consensus 172 v~~~--~~y~lidl~~~~~---~~L~~~~~~~~p~i~~~~~~EfLL-~~--~~~gvfv~~~-G~~~~~~~----i~w~~~ 238 (823)
++.. ....++|+.+++. ...++.+... -.+...+++.++. +. ++....++.. |+...... +.....
T Consensus 192 v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~-~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 270 (331)
T 3u4y_A 192 VANLIGNSIGILETQNPENITLLNAVGTNNLP-GTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPR 270 (331)
T ss_dssp EEETTTTEEEEEECSSTTSCEEEEEEECSSCC-CCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCG
T ss_pred EEeCCCCeEEEEECCCCcccceeeeccCCCCC-ceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCC
Confidence 8875 4588899998876 4445544221 2244456777654 32 2233445653 44311111 111111
Q ss_pred C----cEEEEe--CCEEEEEeC--CeEEEEEcc
Q 003405 239 P----IAVIIQ--KPYAIALLP--RRVEVRSLR 263 (823)
Q Consensus 239 P----~~v~~~--~PYll~~~~--~~ieV~~l~ 263 (823)
| ..+++. .-++++... +.+.|+++.
T Consensus 271 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 271 PLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp GGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 1 123443 346655554 478888875
No 126
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=96.84 E-value=0.41 Score=50.85 Aligned_cols=221 Identities=10% Similarity=0.077 Sum_probs=123.5
Q ss_pred eCCEEEEEeCC----CcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC--c-E
Q 003405 25 YGLKILLGCSD----GSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE--S-I 97 (823)
Q Consensus 25 ~~~~L~vGT~~----G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d--~-l 97 (823)
.++.||++..+ |.+.+|+++.... .......... .......+.+ ..+.+++.+. + +
T Consensus 60 dg~~l~~~~~~~~~~~~v~~~~~~~~~g--------------~~~~~~~~~~-~~~~p~~~~~--dg~~l~~~~~~~~~v 122 (361)
T 3scy_A 60 DGKFVYSVNEFSKDQAAVSAFAFDKEKG--------------TLHLLNTQKT-MGADPCYLTT--NGKNIVTANYSGGSI 122 (361)
T ss_dssp TSSEEEEEECCSSTTCEEEEEEEETTTT--------------EEEEEEEEEC-SSSCEEEEEE--CSSEEEEEETTTTEE
T ss_pred CCCEEEEEEccCCCCCcEEEEEEeCCCC--------------cEEEeeEecc-CCCCcEEEEE--CCCEEEEEECCCCEE
Confidence 35789999886 8999998764321 1122222221 1234556665 5555665542 3 9
Q ss_pred EEEeCCCCcccccc---------------cCCCCcEEEEeeCCCceEEEEE--cCeEEEEEEcCCCc------eeEe---
Q 003405 98 AFHRLPNLETIAVL---------------TKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHDGGRG------FVEV--- 151 (823)
Q Consensus 98 ~~~~L~~l~~~~~i---------------~~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~~~~~------f~~~--- 151 (823)
.+|++..-..+..+ .....++.++++++...++++. .+.+.+|.+..... +...
T Consensus 123 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~ 202 (361)
T 3scy_A 123 TVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP 202 (361)
T ss_dssp EEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred EEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccc
Confidence 99998642211110 0112347788888877777764 46788998875332 3221
Q ss_pred e--eecCCCCceEEEec--CCeEEEEEc--CceEEEEcCCCCeeeccCC---C-CCCCC-EEEEccCCeEEEE--eC--C
Q 003405 152 K--DFGVPDTVKSMSWC--GENICIAIR--KGYMILNATNGALSEVFPS---G-RIGPP-LVVSLLSGELLLG--KE--N 216 (823)
Q Consensus 152 k--ei~~~~~~~~l~~~--~~~i~v~~~--~~y~lidl~~~~~~~L~~~---~-~~~~p-~i~~~~~~EfLL~--~~--~ 216 (823)
. .......|.+++|. |..++++.. ....++|+.+++...+... . ....| .+...+++.+|.+ .+ +
T Consensus 203 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 203 EAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD 282 (361)
T ss_dssp EEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred cceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence 1 23334578899998 456888874 5678899887765333211 1 11123 3445577887753 23 3
Q ss_pred eEEE--Ec-CCCccccCCceeecCCCcEEEEe--CCEEEEEeC--CeEEEEEc
Q 003405 217 IGVF--VD-QNGKLLQADRICWSEAPIAVIIQ--KPYAIALLP--RRVEVRSL 262 (823)
Q Consensus 217 ~gvf--v~-~~G~~~~~~~i~w~~~P~~v~~~--~PYll~~~~--~~ieV~~l 262 (823)
.... ++ ..|.......+.-...|..+++. .-||++... +.+.|+.+
T Consensus 283 ~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 283 GVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp EEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred EEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence 3333 33 24553222222224467888876 347777763 57788655
No 127
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=96.78 E-value=0.41 Score=50.10 Aligned_cols=231 Identities=12% Similarity=0.057 Sum_probs=125.2
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecc--cCcee
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS--RQLLL 91 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~--~~~Ll 91 (823)
...|.|++.. ++.|+.|+.||.+.+|++... .......+.++ ..+|..+...+. .++|+
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~----------------~~~~~~~l~gH-~~~V~~v~~~~~~~~~~l~ 75 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG----------------GQILIADLRGH-EGPVWQVAWAHPMYGNILA 75 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETTTEEEEEEEETT----------------EEEEEEEEECC-SSCEEEEEECCGGGSSCEE
T ss_pred cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC----------------CcEEEEEEcCC-CccEEEEEeCCCCCCCEEE
Confidence 4578888754 689999999999999987531 11223344443 679999988753 57788
Q ss_pred eEeC-c-EEEEeCCCC--ccccccc-CCCCcEEEEeeCCC--ceEEEE-EcCeEEEEEEcCCCceeEeeeec-CCCCceE
Q 003405 92 SLSE-S-IAFHRLPNL--ETIAVLT-KAKGANVYSWDDRR--GFLCFA-RQKRVCIFRHDGGRGFVEVKDFG-VPDTVKS 162 (823)
Q Consensus 92 ~l~d-~-l~~~~L~~l--~~~~~i~-~~kg~~~fa~~~~~--~~l~V~-~kkki~l~~~~~~~~f~~~kei~-~~~~~~~ 162 (823)
+.+. + |++|++.+- +....+. ....+++++++++. ..++.+ ..+.|.+|....+..+...+.+. -...+.+
T Consensus 76 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~ 155 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA 155 (316)
T ss_dssp EEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred EEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence 8775 4 999998653 2222222 23467888887763 356666 56778898887442232222211 1245667
Q ss_pred EEecCC-------------------eEEEEEc-CceEEEEcCCCC-eeeccCCCCCCCCE--EEEccCC----eEEE-Ee
Q 003405 163 MSWCGE-------------------NICIAIR-KGYMILNATNGA-LSEVFPSGRIGPPL--VVSLLSG----ELLL-GK 214 (823)
Q Consensus 163 l~~~~~-------------------~i~v~~~-~~y~lidl~~~~-~~~L~~~~~~~~p~--i~~~~~~----EfLL-~~ 214 (823)
++|..+ .++.|.. ....+.|+.++. ...+........++ +...+++ .+|+ +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s 235 (316)
T 3bg1_A 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS 235 (316)
T ss_dssp CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence 777532 3444444 456788886542 12221111111222 2222332 4555 43
Q ss_pred -CCeEEEEcCCCccc---cCCcee-ecCCCcEEEEe--CCEEEEEeC-CeEEEEEcc
Q 003405 215 -ENIGVFVDQNGKLL---QADRIC-WSEAPIAVIIQ--KPYAIALLP-RRVEVRSLR 263 (823)
Q Consensus 215 -~~~gvfv~~~G~~~---~~~~i~-w~~~P~~v~~~--~PYll~~~~-~~ieV~~l~ 263 (823)
|....+.+.+.... ....+. .......+++. ..+|++... +.|.|++..
T Consensus 236 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 236 QDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 44555555433100 011111 23333445554 345555543 567787764
No 128
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.1 Score=59.47 Aligned_cols=155 Identities=6% Similarity=0.056 Sum_probs=104.2
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeec-C--CCCCCeeEEEEecccCcee
Q 003405 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTIS-G--FSKKPILSMEVLASRQLLL 91 (823)
Q Consensus 17 ~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~-~--~~k~~I~qI~~~~~~~~Ll 91 (823)
..|.|++.- |+.|.+|+.+|.+.+|+... +...+. . .....|..+..-|+.++|+
T Consensus 86 ~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--------------------~l~~l~~~~~~~~~sv~svafSPDG~~LA 145 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--------------------MLTNLDSKGNLSSRTYHCFEWNPIESSIV 145 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETTSCEEEEETTE--------------------EEEECCCSSCSTTTCEEEEEECSSSSCEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--------------------eeeeccCCCccccccEEEEEEcCCCCEEE
Confidence 347666544 46899999999999998321 122222 0 1134699999999999999
Q ss_pred eEeC-c-EEEEeCCCCcc-------ccccc-----CCCCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEeeee-cC
Q 003405 92 SLSE-S-IAFHRLPNLET-------IAVLT-----KAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDF-GV 156 (823)
Q Consensus 92 ~l~d-~-l~~~~L~~l~~-------~~~i~-----~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kei-~~ 156 (823)
+-++ | |++|++.+-.. +.++. ....|..++.+++. .++.+..+.+.++...++..-...+.+ ..
T Consensus 146 sgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~ 224 (588)
T 2j04_A 146 VGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNA 224 (588)
T ss_dssp EEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECC
T ss_pred EEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeeccc
Confidence 9986 5 99999875321 12221 12367888888876 445557788888888754311111223 12
Q ss_pred -CCCceEEEecCCeEEEEEcCceEEEEcCCCCeeecc
Q 003405 157 -PDTVKSMSWCGENICIAIRKGYMILNATNGALSEVF 192 (823)
Q Consensus 157 -~~~~~~l~~~~~~i~v~~~~~y~lidl~~~~~~~L~ 192 (823)
.+.|.+++|.|+.|+.|..+...+.|+.+++...+.
T Consensus 225 h~~~V~svaFsg~~LASa~~~tIkLWd~~~~~~~~~~ 261 (588)
T 2j04_A 225 SRRKITDLKIVDYKVVLTCPGYVHKIDLKNYSISSLK 261 (588)
T ss_dssp CSSCCCCEEEETTEEEEECSSEEEEEETTTTEEEEEE
T ss_pred ccCcEEEEEEECCEEEEEeCCeEEEEECCCCeEEEEE
Confidence 257999999988888888888999999988774443
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=96.71 E-value=0.2 Score=57.31 Aligned_cols=229 Identities=11% Similarity=0.079 Sum_probs=139.4
Q ss_pred EeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEec----ccCceeeEeC--c-
Q 003405 24 SYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLA----SRQLLLSLSE--S- 96 (823)
Q Consensus 24 ~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~----~~~~Ll~l~d--~- 96 (823)
..+++||++..+|.|.+|++...+ .+...++.. ...+..+.+-| +.+.+++-+. +
T Consensus 188 pdg~~l~v~~~d~~V~v~D~~~~t----------------~~~~~~i~~--g~~p~~va~sp~~~~dg~~l~v~~~~~~~ 249 (543)
T 1nir_A 188 ASGRYLLVIGRDARIDMIDLWAKE----------------PTKVAEIKI--GIEARSVESSKFKGYEDRYTIAGAYWPPQ 249 (543)
T ss_dssp TTSCEEEEEETTSEEEEEETTSSS----------------CEEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEESSE
T ss_pred CCCCEEEEECCCCeEEEEECcCCC----------------CcEEEEEec--CCCcceEEeCCCcCCCCCEEEEEEccCCe
Confidence 346799999999999999973111 123334332 34578888888 7787777663 3
Q ss_pred EEEEeCCCCcccccccC------------CCCcEEEEeeCCCceEEEEEc--CeEEEEEEcCCCceeEeeeecCCCCceE
Q 003405 97 IAFHRLPNLETIAVLTK------------AKGANVYSWDDRRGFLCFARQ--KRVCIFRHDGGRGFVEVKDFGVPDTVKS 162 (823)
Q Consensus 97 l~~~~L~~l~~~~~i~~------------~kg~~~fa~~~~~~~l~V~~k--kki~l~~~~~~~~f~~~kei~~~~~~~~ 162 (823)
|.+|+..+++.+..+.. ...+..++.+.+.+.++|..+ .+|.++.....+.. .+..+.....|..
T Consensus 250 v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l-~~~~i~~~~~~~~ 328 (543)
T 1nir_A 250 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL-TVTSIGAAPFLHD 328 (543)
T ss_dssp EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC-EEEEEECCSSCCC
T ss_pred EEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc-eeEEeccCcCccC
Confidence 99999988876654432 113556777776666666644 56777777643222 2334555667888
Q ss_pred EEec--CCeEEEEEc--CceEEEEcCCCCeeeccCCCCCCCC---EEEEccC-CeEEEEe---CCeEEEEcCCC------
Q 003405 163 MSWC--GENICIAIR--KGYMILNATNGALSEVFPSGRIGPP---LVVSLLS-GELLLGK---ENIGVFVDQNG------ 225 (823)
Q Consensus 163 l~~~--~~~i~v~~~--~~y~lidl~~~~~~~L~~~~~~~~p---~i~~~~~-~EfLL~~---~~~gvfv~~~G------ 225 (823)
++|. |..++++.. +...++|+.+++....++.+....| .....++ +.++++. ++..-+++.+.
T Consensus 329 ~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~ 408 (543)
T 1nir_A 329 GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY 408 (543)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred ceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchh
Confidence 8987 556777765 5688999999988777665542222 2222244 4555532 24444555432
Q ss_pred --ccccCCceeec-CCCcEEEEe--CCEEEEEe--------CCeEEEEEccCCCcee-EEEee
Q 003405 226 --KLLQADRICWS-EAPIAVIIQ--KPYAIALL--------PRRVEVRSLRVPYALI-QTIVL 274 (823)
Q Consensus 226 --~~~~~~~i~w~-~~P~~v~~~--~PYll~~~--------~~~ieV~~l~~~~~lv-Q~i~l 274 (823)
+.+ .++.-. ..+..+.++ .++|.+-. .+.|.|+++. +.... +.+++
T Consensus 409 ~~~~v--~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~-~~~~~~~~~~v 468 (543)
T 1nir_A 409 AWKKV--AELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK-NLDAKYQVLPI 468 (543)
T ss_dssp BTSEE--EEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETT-CTTSCCEEECH
T ss_pred cCeEE--EEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECC-CCCCCeEEeec
Confidence 111 122222 123445544 46777765 3489999996 46666 77654
No 130
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.61 E-value=0.11 Score=55.23 Aligned_cols=212 Identities=10% Similarity=0.101 Sum_probs=130.1
Q ss_pred eeEEEEecccCceeeEeC--c-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEE--cCeEEEEEEcCCCceeEee
Q 003405 78 ILSMEVLASRQLLLSLSE--S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHDGGRGFVEVK 152 (823)
Q Consensus 78 I~qI~~~~~~~~Ll~l~d--~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~~~~~f~~~k 152 (823)
...|.+. .+.+.+.+. + |.+++..+.+.+.+++...+...++++++. .+.|+. .++|.++.... .+..+
T Consensus 46 ~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t---~~~~~ 119 (328)
T 3dsm_A 46 AQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKT---YEITG 119 (328)
T ss_dssp EEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTT---TEEEE
T ss_pred ceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCC---CeEEE
Confidence 4556543 344555443 3 999999888876666666778888886553 788876 56666665442 23445
Q ss_pred eecCCC------CceEEEecCCeEEEEE---cCceEEEEcCCCCeeeccCCCCCCCCE-EEEccCCeEEEEeC-------
Q 003405 153 DFGVPD------TVKSMSWCGENICIAI---RKGYMILNATNGALSEVFPSGRIGPPL-VVSLLSGELLLGKE------- 215 (823)
Q Consensus 153 ei~~~~------~~~~l~~~~~~i~v~~---~~~y~lidl~~~~~~~L~~~~~~~~p~-i~~~~~~EfLL~~~------- 215 (823)
.+.++. .|.+|++.++.++++. .+...++|+.+++....++.+. .|. +..-+++.++++..
T Consensus 120 ~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~--~p~~i~~~~dG~l~v~~~~~~~~~~ 197 (328)
T 3dsm_A 120 YIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI--QPTSLVMDKYNKMWTITDGGYEGSP 197 (328)
T ss_dssp EEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS--CBCCCEECTTSEEEEEBCCBCTTCS
T ss_pred EEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC--CccceEEcCCCCEEEEECCCccCCc
Confidence 566666 8889999888999996 3568899999988766555543 233 33345677766532
Q ss_pred -----CeEEEEcCC-CccccCCceeec--CCCcEEEEe--CCEEEEEeCCeEEEEEccCCCceeE--EEee--CCcccc-
Q 003405 216 -----NIGVFVDQN-GKLLQADRICWS--EAPIAVIIQ--KPYAIALLPRRVEVRSLRVPYALIQ--TIVL--QNVRHL- 280 (823)
Q Consensus 216 -----~~gvfv~~~-G~~~~~~~i~w~--~~P~~v~~~--~PYll~~~~~~ieV~~l~~~~~lvQ--~i~l--~~~~~l- 280 (823)
+....+|.. |+.. ..+..+ ..|..+++. .-++++... .+.+++.. ++.+.. .++. ..+..+
T Consensus 198 ~~~~~~~v~~id~~t~~v~--~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~-t~~~~~~~~~~~~~~~p~gi~ 273 (328)
T 3dsm_A 198 YGYEAPSLYRIDAETFTVE--KQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVE-ADRVPVRPFLEFRDTKYYGLT 273 (328)
T ss_dssp SCBCCCEEEEEETTTTEEE--EEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETT-CSSCCSSCSBCCCSSCEEEEE
T ss_pred cccCCceEEEEECCCCeEE--EEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECC-CCceeeeeeecCCCCceEEEE
Confidence 234556764 4432 234332 368888887 467777665 77777775 454431 1111 111222
Q ss_pred -cccCCeEEEec------cceEEEeecc
Q 003405 281 -IPSSNAVVVAL------ENSIFGLFPV 301 (823)
Q Consensus 281 -~~~~~~v~v~s------~~~I~~l~~~ 301 (823)
.+.++.+|++. ++.|+++.+.
T Consensus 274 vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 274 VNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp ECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EcCCCCeEEEEcccccccCCEEEEECCC
Confidence 23466788775 4667776643
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.60 E-value=0.72 Score=47.97 Aligned_cols=224 Identities=8% Similarity=0.078 Sum_probs=131.6
Q ss_pred EeCCEEEE-EeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC--c-EEE
Q 003405 24 SYGLKILL-GCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE--S-IAF 99 (823)
Q Consensus 24 ~~~~~L~v-GT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d--~-l~~ 99 (823)
..++.+|+ +..+|.|.+|+..... +...+. .+..++ .+.+-|..+.+++.+. + |.+
T Consensus 7 ~~~~~~~v~~~~~~~v~~~d~~~~~------------------~~~~~~-~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~ 66 (331)
T 3u4y_A 7 TTSNFGIVVEQHLRRISFFSTDTLE------------------ILNQIT-LGYDFV-DTAITSDCSNVVVTSDFCQTLVQ 66 (331)
T ss_dssp CCCCEEEEEEGGGTEEEEEETTTCC------------------EEEEEE-CCCCEE-EEEECSSSCEEEEEESTTCEEEE
T ss_pred CCCCEEEEEecCCCeEEEEeCcccc------------------eeeeEE-ccCCcc-eEEEcCCCCEEEEEeCCCCeEEE
Confidence 34566655 4567899999865321 122222 234556 8888888887777664 2 999
Q ss_pred EeCCCCcc-cccccCCCCcEE-EEeeCCCceEEEEEcC----eEEEEEEcCCCceeEeeeecCCCCceEEEec--CCeEE
Q 003405 100 HRLPNLET-IAVLTKAKGANV-YSWDDRRGFLCFARQK----RVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GENIC 171 (823)
Q Consensus 100 ~~L~~l~~-~~~i~~~kg~~~-fa~~~~~~~l~V~~kk----ki~l~~~~~~~~f~~~kei~~~~~~~~l~~~--~~~i~ 171 (823)
|++.+-+. ...+....+... ++++++...++++... .|.+|....+ ...+.+.....|.+++|. |+.++
T Consensus 67 ~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~spdg~~l~ 143 (331)
T 3u4y_A 67 IETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN---KFISTIPIPYDAVGIAISPNGNGLI 143 (331)
T ss_dssp EECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT---EEEEEEECCTTEEEEEECTTSSCEE
T ss_pred EECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC---CeEEEEECCCCccceEECCCCCEEE
Confidence 99876554 333333344445 7888877777765544 6777776633 234456667788999998 34677
Q ss_pred EEEc--Cc-eEEEEcCCC-Ce----eeccCCCCCCCCEE-EEccCCeEE-EEe--CCeEEEEcC-CCccc-cCCceeecC
Q 003405 172 IAIR--KG-YMILNATNG-AL----SEVFPSGRIGPPLV-VSLLSGELL-LGK--ENIGVFVDQ-NGKLL-QADRICWSE 237 (823)
Q Consensus 172 v~~~--~~-y~lidl~~~-~~----~~L~~~~~~~~p~i-~~~~~~EfL-L~~--~~~gvfv~~-~G~~~-~~~~i~w~~ 237 (823)
++.. .. ..++++... .. ...++.+. .|.. ...+++.++ ++. ++....++. .|+.. ....+.-..
T Consensus 144 ~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~ 221 (331)
T 3u4y_A 144 LIDRSSANTVRRFKIDADGVLFDTGQEFISGGT--RPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNN 221 (331)
T ss_dssp EEEETTTTEEEEEEECTTCCEEEEEEEEECSSS--SEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSS
T ss_pred EEecCCCceEEEEEECCCCcEeecCCccccCCC--CccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCC
Confidence 7755 45 678887653 22 12223322 3443 344667654 433 344555665 34430 012444456
Q ss_pred CCcEEEEe--CCEEEEEeC--CeEEEEEccCCCce--eEEEe
Q 003405 238 APIAVIIQ--KPYAIALLP--RRVEVRSLRVPYAL--IQTIV 273 (823)
Q Consensus 238 ~P~~v~~~--~PYll~~~~--~~ieV~~l~~~~~l--vQ~i~ 273 (823)
.|..+++. ..|+++... +.|.++++. ++.+ ++++.
T Consensus 222 ~~~~~~~spdg~~l~v~~~~~~~i~~~d~~-~~~~~~~~~~~ 262 (331)
T 3u4y_A 222 LPGTIVVSRDGSTVYVLTESTVDVFNFNQL-SGTLSFVKSFG 262 (331)
T ss_dssp CCCCEEECTTSSEEEEECSSEEEEEEEETT-TTEEEEEEEEE
T ss_pred CCceEEECCCCCEEEEEEcCCCEEEEEECC-CCceeeecccc
Confidence 67777775 457776654 468888875 4655 55544
No 132
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=96.56 E-value=0.032 Score=60.95 Aligned_cols=132 Identities=14% Similarity=0.206 Sum_probs=88.2
Q ss_pred CCCCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 14 NCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 14 ~~~~~I~ci~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
.++. |+++...++.|++| ++|.|.+|++..... ....+.+ +.+|..+..++. +++++.
T Consensus 86 ~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~------------------~~~~~~~-~~~v~~i~~~~p-~~av~~ 143 (388)
T 1xip_A 86 EIPD-VIFVCFHGDQVLVS-TRNALYSLDLEELSE------------------FRTVTSF-EKPVFQLKNVNN-TLVILN 143 (388)
T ss_dssp ECTT-EEEEEEETTEEEEE-ESSEEEEEESSSTTC------------------EEEEEEC-SSCEEEEEECSS-EEEEEE
T ss_pred eCCC-eeEEEECCCEEEEE-cCCcEEEEEchhhhc------------------cCcccee-ecceeeEEecCC-CEEEEE
Confidence 4667 99888877899999 889999999765321 1122223 467888887765 455555
Q ss_pred eCc-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeecC----------CCCce
Q 003405 94 SES-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGV----------PDTVK 161 (823)
Q Consensus 94 ~d~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~~----------~~~~~ 161 (823)
+|| |.+|++.+..... ...+++++|++++. ++++ ..+++.+|...+. .....++|.. +..|.
T Consensus 144 ~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~-~~~~k~~I~~Pp~~~~~~~~~~~V~ 217 (388)
T 1xip_A 144 SVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNG-EMEKQFEFSLPSELEELPVEEYSPL 217 (388)
T ss_dssp TTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETT-EEEEEEEECCCHHHHTSCTTTSEEE
T ss_pred CCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCc-cccccceecCCcccccccCCCeeEE
Confidence 666 9999997554332 23589999999875 5666 5578889988743 2222344532 24588
Q ss_pred EEEecCC-eEEEE
Q 003405 162 SMSWCGE-NICIA 173 (823)
Q Consensus 162 ~l~~~~~-~i~v~ 173 (823)
+|.|..+ .++++
T Consensus 218 sI~wl~~~~flv~ 230 (388)
T 1xip_A 218 SVTILSPQDFLAV 230 (388)
T ss_dssp EEEESSSSEEEEE
T ss_pred EEEEecCCeEEEE
Confidence 9999955 44444
No 133
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.53 E-value=0.044 Score=60.64 Aligned_cols=154 Identities=13% Similarity=0.118 Sum_probs=97.8
Q ss_pred CcEEEEEEe---CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 17 PKIDAVASY---GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 17 ~~I~ci~~~---~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
..|+|++.. ++.|+.|+.||+|.+|++.... ...... .......|..+...+..+++++-
T Consensus 165 ~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~----------------~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g 227 (435)
T 4e54_B 165 GSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI----------------LRVFAS-SDTINIWFCSLDVSASSRMVVTG 227 (435)
T ss_dssp CCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE----------------EEEEEC-CSSCSCCCCCEEEETTTTEEEEE
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc----------------eeEEec-cCCCCccEEEEEECCCCCEEEEE
Confidence 478999864 4689999999999999976321 111111 11123467788888887777776
Q ss_pred eC-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCc-eEEEEE-cCeEEEEEEcCCCceeEe-eeecCCCCceEEEec-
Q 003405 94 SE-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRG-FLCFAR-QKRVCIFRHDGGRGFVEV-KDFGVPDTVKSMSWC- 166 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~-~l~V~~-kkki~l~~~~~~~~f~~~-kei~~~~~~~~l~~~- 166 (823)
+. + |.+|++..-. +..+. ....|++++++++.. .++.+. .+.|.+|.+...+..... ....-.+.|.+++|.
T Consensus 228 ~~dg~i~~wd~~~~~-~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp 306 (435)
T 4e54_B 228 DNVGNVILLNMDGKE-LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP 306 (435)
T ss_dssp CSSSBEEEEESSSCB-CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT
T ss_pred eCCCcEeeeccCcce-eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC
Confidence 65 4 9999986422 22222 235688888887654 455554 567888877643211111 111224678999997
Q ss_pred -CCeEEEEEc-CceEEEEcCCCCe
Q 003405 167 -GENICIAIR-KGYMILNATNGAL 188 (823)
Q Consensus 167 -~~~i~v~~~-~~y~lidl~~~~~ 188 (823)
|..|+.|.. ....++|+.++..
T Consensus 307 dg~~l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 307 DGARLLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp TSSEEEEEESSSCEEEEESSSSSS
T ss_pred CCCeeEEEcCCCEEEEEECCCCcc
Confidence 557777776 4578899988753
No 134
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.50 E-value=0.6 Score=48.27 Aligned_cols=154 Identities=15% Similarity=0.205 Sum_probs=97.3
Q ss_pred CCcEEEEEEe----CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecc--cCc
Q 003405 16 SPKIDAVASY----GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS--RQL 89 (823)
Q Consensus 16 ~~~I~ci~~~----~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~--~~~ 89 (823)
...|.|++.. ++.|+.|+.||.|.+|++.... +.....+. .+..+|..+...|. .++
T Consensus 53 ~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~----------------~~~~~~~~-~h~~~v~~v~~~p~~~g~~ 115 (297)
T 2pm7_B 53 EGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR----------------WSQIAVHA-VHSASVNSVQWAPHEYGPM 115 (297)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC----------------BCCCEEEC-CCSSCEEEEEECCGGGCSE
T ss_pred cCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc----------------eEEEEEee-cCCCceeEEEeCcCCCCcE
Confidence 4579998853 5789999999999999976321 11112222 23578999999986 456
Q ss_pred eeeEeC-c-EEEEeCCCCccc--ccc-cCCCCcEEEEeeCCC-------------ceEEEE-EcCeEEEEEEcCCC-cee
Q 003405 90 LLSLSE-S-IAFHRLPNLETI--AVL-TKAKGANVYSWDDRR-------------GFLCFA-RQKRVCIFRHDGGR-GFV 149 (823)
Q Consensus 90 Ll~l~d-~-l~~~~L~~l~~~--~~i-~~~kg~~~fa~~~~~-------------~~l~V~-~kkki~l~~~~~~~-~f~ 149 (823)
+++.+. + |++|++.+-... ..+ ....+++.++.+++. ..++.+ ..+.|.+|....+. .+.
T Consensus 116 l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~ 195 (297)
T 2pm7_B 116 LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195 (297)
T ss_dssp EEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEE
T ss_pred EEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEE
Confidence 666665 5 999998653211 111 223467777776642 256666 46779999887542 122
Q ss_pred EeeeecC-CCCceEEEecCC-----eEEEEEc-CceEEEEcCCC
Q 003405 150 EVKDFGV-PDTVKSMSWCGE-----NICIAIR-KGYMILNATNG 186 (823)
Q Consensus 150 ~~kei~~-~~~~~~l~~~~~-----~i~v~~~-~~y~lidl~~~ 186 (823)
..+.+.- .+.|.+++|..+ .++-|.. +...+.|+.++
T Consensus 196 ~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 196 LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred EEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 2333332 467999999843 4555554 56788888764
No 135
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=96.31 E-value=0.052 Score=58.34 Aligned_cols=114 Identities=12% Similarity=0.122 Sum_probs=70.7
Q ss_pred CEEEE--EeCCCcEEEEcCCCCCCCCCCCCccccccccccee-eeeecCCCCCCeeEEEEecccCceeeEeC--c-EEEE
Q 003405 27 LKILL--GCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYEL-ERTISGFSKKPILSMEVLASRQLLLSLSE--S-IAFH 100 (823)
Q Consensus 27 ~~L~v--GT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l-~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d--~-l~~~ 100 (823)
+.+.+ |+.+|.|.+|++......... ........... .+.+.+ ++.+|..+..-|..++|++.++ . |++|
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~---~~~~~~~~~~p~~~~~~~-h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw 223 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQ---DQGVQQKAILGKGVLIKA-HTNPIKMVRLNRKSDMVATCSQDGTIIRVF 223 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC---------------------CCEEECC-CSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccc---cccccccccCcccEEEEc-cCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 44544 677888888876643210000 00000000001 233343 3679999999999888888875 4 9999
Q ss_pred eCCCCccccccc---CCCCcEEEEeeCCCceEEEEE-cCeEEEEEEcC
Q 003405 101 RLPNLETIAVLT---KAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDG 144 (823)
Q Consensus 101 ~L~~l~~~~~i~---~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~ 144 (823)
++.+.+.+..+. ....++.++++++...++.+. .+.|.+|.+..
T Consensus 224 d~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 224 KTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp ETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred ECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 998877666554 345688899998877777774 56788998763
No 136
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.30 E-value=0.67 Score=50.78 Aligned_cols=185 Identities=11% Similarity=0.103 Sum_probs=111.0
Q ss_pred CcEEEEEEe--CCEEEEEeCCC---cEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCcee
Q 003405 17 PKIDAVASY--GLKILLGCSDG---SLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLL 91 (823)
Q Consensus 17 ~~I~ci~~~--~~~L~vGT~~G---~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll 91 (823)
..|.|++.. ++.|+.++.++ .|++|++.... . ..+..+ ...+..+..-|..+.|+
T Consensus 179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~------------------~-~~l~~~-~~~~~~~~~spdg~~la 238 (415)
T 2hqs_A 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA------------------V-RQVASF-PRHNGAPAFSPDGSKLA 238 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC------------------E-EEEECC-SSCEEEEEECTTSSEEE
T ss_pred CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc------------------E-EEeecC-CCcccCEEEcCCCCEEE
Confidence 356666544 46788888775 89999876321 1 122222 45789999999888776
Q ss_pred eE-e-Cc---EEEEeCCCCcccccccC-CCCcEEEEeeCCCceEEEEEc--CeEEEEEEcCC-CceeEeeeec-CCCCce
Q 003405 92 SL-S-ES---IAFHRLPNLETIAVLTK-AKGANVYSWDDRRGFLCFARQ--KRVCIFRHDGG-RGFVEVKDFG-VPDTVK 161 (823)
Q Consensus 92 ~l-~-d~---l~~~~L~~l~~~~~i~~-~kg~~~fa~~~~~~~l~V~~k--kki~l~~~~~~-~~f~~~kei~-~~~~~~ 161 (823)
+. + |+ |.+|++.+-+. ..+.. ...+..++++++...|+++.. +...||.++.. ... +.+. -...+.
T Consensus 239 ~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~---~~l~~~~~~~~ 314 (415)
T 2hqs_A 239 FALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP---QRITWEGSQNQ 314 (415)
T ss_dssp EEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC---EECCCSSSEEE
T ss_pred EEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE---EEEecCCCccc
Confidence 44 3 22 88899876443 22222 234677888888777777754 34456665532 121 2222 235677
Q ss_pred EEEec--CCeEEEEEcC----ceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-Ee-CC---eEEEEcCCCcc
Q 003405 162 SMSWC--GENICIAIRK----GYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-GK-EN---IGVFVDQNGKL 227 (823)
Q Consensus 162 ~l~~~--~~~i~v~~~~----~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~~-~~---~gvfv~~~G~~ 227 (823)
+++|. |+.|+++... ...++|+.+++...+.... ....+...+++..|+ +. ++ ....++.+|..
T Consensus 315 ~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~--~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 315 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS--SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred CeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC--CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 88886 5667777653 5778899998876665432 222344557777766 32 22 34556777653
No 137
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=96.30 E-value=1.7 Score=47.31 Aligned_cols=228 Identities=11% Similarity=0.097 Sum_probs=126.7
Q ss_pred EEEEEe-CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecC-CCCCCeeEEEEecccCceeeEeC-c
Q 003405 20 DAVASY-GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISG-FSKKPILSMEVLASRQLLLSLSE-S 96 (823)
Q Consensus 20 ~ci~~~-~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~-~~k~~I~qI~~~~~~~~Ll~l~d-~ 96 (823)
++++.- ++.|.||. ||.|++|+..... +.+.+.. -+...|+.|...|..+.|++-+. +
T Consensus 109 ~~l~wS~~n~lAvgl-d~tV~lWd~~tg~------------------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg 169 (420)
T 4gga_A 109 NLVDWSSGNVLAVAL-DNSVYLWSASSGD------------------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA 169 (420)
T ss_dssp BCEEECTTSEEEEEE-TTEEEEEETTTCC------------------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTS
T ss_pred eeEEECCCCEEEEEe-CCEEEEEECCCCC------------------EEEEEEecCCCCcEEEEEECCCCCEEEEEECCC
Confidence 445433 35778887 8999999865321 1222221 23568999999999888888765 5
Q ss_pred -EEEEeCCCCcccccccC-CCCcEEEEeeCCCceEEEEEc-CeEEEEEEcCCCceeEeeeec-CCCCceEEEec--CCeE
Q 003405 97 -IAFHRLPNLETIAVLTK-AKGANVYSWDDRRGFLCFARQ-KRVCIFRHDGGRGFVEVKDFG-VPDTVKSMSWC--GENI 170 (823)
Q Consensus 97 -l~~~~L~~l~~~~~i~~-~kg~~~fa~~~~~~~l~V~~k-kki~l~~~~~~~~f~~~kei~-~~~~~~~l~~~--~~~i 170 (823)
|.+|++.+.+.+..... ...+.+++.+ ...++.+.. ..+.++...... ..+..+. -.+.+.++.|. |..+
T Consensus 170 ~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~--~~~~~~~~h~~~~~~~~~~~~g~~l 245 (420)
T 4gga_A 170 EVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE--HHVATLSGHSQEVCGLRWAPDGRHL 245 (420)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS--CEEEEEECCSSCEEEEEECTTSSEE
T ss_pred eEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc--eeeEEecccccceeeeeecCCCCee
Confidence 99999987665544322 2244555554 345666644 445555544221 2222222 24567777776 5566
Q ss_pred EEEEc-CceEEEEcCCCCeee--ccCCCCCCCC--EEEEccCC-eEEE-E---eCCeEEEEcC-CCccccCCceeecCCC
Q 003405 171 CIAIR-KGYMILNATNGALSE--VFPSGRIGPP--LVVSLLSG-ELLL-G---KENIGVFVDQ-NGKLLQADRICWSEAP 239 (823)
Q Consensus 171 ~v~~~-~~y~lidl~~~~~~~--L~~~~~~~~p--~i~~~~~~-EfLL-~---~~~~gvfv~~-~G~~~~~~~i~w~~~P 239 (823)
+.+.. +...+.|..+++... +........+ .+...+.+ .++. + .|....+.|. .|... ..+.....+
T Consensus 246 ~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~--~~~~~~~~v 323 (420)
T 4gga_A 246 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL--SAVDAHSQV 323 (420)
T ss_dssp EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE--EEEECSSCE
T ss_pred eeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc--eeeccccce
Confidence 66666 557788888765321 1111111112 23333333 3433 2 2345555564 33322 233334444
Q ss_pred cEEEEe--CCEEEEEe---CCeEEEEEccCCCceeEEEe
Q 003405 240 IAVIIQ--KPYAIALL---PRRVEVRSLRVPYALIQTIV 273 (823)
Q Consensus 240 ~~v~~~--~PYll~~~---~~~ieV~~l~~~~~lvQ~i~ 273 (823)
..+.+. ..++++.+ .+.|.|+++. ++..++++.
T Consensus 324 ~~~~~~~~~~~lv~~sg~~d~~I~iwd~~-~~~~v~~l~ 361 (420)
T 4gga_A 324 CSILWSPHYKELISGHGFAQNQLVIWKYP-TMAKVAELK 361 (420)
T ss_dssp EEEEEETTTTEEEEEECTTTCCEEEEETT-TCCEEEEEC
T ss_pred eeeeecCCCCeEEEEEecCCCEEEEEECC-CCcEEEEEc
Confidence 555544 34666654 3679999996 578888775
No 138
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=96.22 E-value=0.25 Score=52.63 Aligned_cols=164 Identities=12% Similarity=0.154 Sum_probs=100.1
Q ss_pred EEEEEE--eCCEEEEEeC-CCcEEEEcCCCCCCCCCCCCccccccccc-ceee---eeecCCCCCCeeEEEEecccCcee
Q 003405 19 IDAVAS--YGLKILLGCS-DGSLKIYSPGSSESDRSPPSDYQSLRKES-YELE---RTISGFSKKPILSMEVLASRQLLL 91 (823)
Q Consensus 19 I~ci~~--~~~~L~vGT~-~G~l~~y~~~~~~~~~~~~~d~~~l~~~~-~~l~---~~~~~~~k~~I~qI~~~~~~~~Ll 91 (823)
+.|++. .+++||++.. ++.+.+|++....... ... +... ..........+..+.+-|....++
T Consensus 157 ~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~----------~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 226 (361)
T 3scy_A 157 LHCVRITPDGKYLLADDLGTDQIHKFNINPNANAD----------NKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAY 226 (361)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTT----------TCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred ceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcc----------cccceeecccccceecCCCCCCeEEEEcCCCCEEE
Confidence 455544 3567887664 7899999876432100 000 1110 111111234577898899888777
Q ss_pred eEeC--c-EEEEeCCCC--ccccccc----CCCCcEEEEeeCCCceEEEEEc---CeEEEEEEcC-CCceeEeeeecCCC
Q 003405 92 SLSE--S-IAFHRLPNL--ETIAVLT----KAKGANVYSWDDRRGFLCFARQ---KRVCIFRHDG-GRGFVEVKDFGVPD 158 (823)
Q Consensus 92 ~l~d--~-l~~~~L~~l--~~~~~i~----~~kg~~~fa~~~~~~~l~V~~k---kki~l~~~~~-~~~f~~~kei~~~~ 158 (823)
+.+. + |.+|++.+- +....+. ...+...++++++...++++.+ +.|.+|.++. +..+..+..+....
T Consensus 227 v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~ 306 (361)
T 3scy_A 227 LINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGI 306 (361)
T ss_dssp EEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCC
Confidence 7774 3 999987532 2222221 1245678888888777877754 5799999962 33455555555566
Q ss_pred CceEEEec--CCeEEEEEc--CceEE--EEcCCCCeeecc
Q 003405 159 TVKSMSWC--GENICIAIR--KGYMI--LNATNGALSEVF 192 (823)
Q Consensus 159 ~~~~l~~~--~~~i~v~~~--~~y~l--idl~~~~~~~L~ 192 (823)
.|.+++|. |..|+++.. ....+ +|..+|+...+.
T Consensus 307 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 307 HPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp CCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred CCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence 88999998 567888884 44566 466677766554
No 139
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=96.13 E-value=1.1 Score=45.87 Aligned_cols=135 Identities=10% Similarity=0.056 Sum_probs=76.5
Q ss_pred CCCeeEEEEecccCceeeEeC-c-EEEEeCCCCcccc----c-ccCCCCcEEEEeeCCCce-EEEEE---cCeEEEEEEc
Q 003405 75 KKPILSMEVLASRQLLLSLSE-S-IAFHRLPNLETIA----V-LTKAKGANVYSWDDRRGF-LCFAR---QKRVCIFRHD 143 (823)
Q Consensus 75 k~~I~qI~~~~~~~~Ll~l~d-~-l~~~~L~~l~~~~----~-i~~~kg~~~fa~~~~~~~-l~V~~---kkki~l~~~~ 143 (823)
...+..+...+..+.+++.++ + |++|++.+-+... . ......+..++..+.... ++++. .+.|.++...
T Consensus 150 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~ 229 (318)
T 4ggc_A 150 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 229 (318)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT
T ss_pred cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc
Confidence 567888888888888887775 5 9999986543211 1 112234566666555433 33432 3456666655
Q ss_pred CCCceeEeeeecCCCCceEEEec--CCeEEEEE---cCceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE
Q 003405 144 GGRGFVEVKDFGVPDTVKSMSWC--GENICIAI---RKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL 212 (823)
Q Consensus 144 ~~~~f~~~kei~~~~~~~~l~~~--~~~i~v~~---~~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL 212 (823)
.. ...........+..+.|. ++.+++++ .....+.|+.+++...-+......--.+...+++.+|+
T Consensus 230 ~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~ 300 (318)
T 4ggc_A 230 SG---ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 300 (318)
T ss_dssp TC---CEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred cc---cccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 32 222233445667777776 45676665 25678899988765444332111111233345666665
No 140
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=96.08 E-value=1.5 Score=44.80 Aligned_cols=229 Identities=11% Similarity=0.063 Sum_probs=119.4
Q ss_pred EEEEEe-CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecC-CCCCCeeEEEEecccCceeeEeC-c
Q 003405 20 DAVASY-GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISG-FSKKPILSMEVLASRQLLLSLSE-S 96 (823)
Q Consensus 20 ~ci~~~-~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~-~~k~~I~qI~~~~~~~~Ll~l~d-~ 96 (823)
+|++-- ++.|.+|. ||.|++|+.... ++.+.++. -+...|..+...|..+.+++-+. +
T Consensus 29 ~~l~WS~~~~lAvg~-D~tV~iWd~~tg------------------~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg 89 (318)
T 4ggc_A 29 NLVDWSSGNVLAVAL-DNSVYLWSASSG------------------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA 89 (318)
T ss_dssp BCEEECTTSEEEEEE-TTEEEEEETTTC------------------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS
T ss_pred eEEEECCCCEEEEEe-CCEEEEEECCCC------------------CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCC
Confidence 556533 35677775 899999986532 12222221 23568999999999998888775 5
Q ss_pred -EEEEeCCCCcccccccCC-CCcEEEEeeCCCceEEEEEcCeE-EEEEEcCCCceeEeeee-cCCCCceEEEec--CCeE
Q 003405 97 -IAFHRLPNLETIAVLTKA-KGANVYSWDDRRGFLCFARQKRV-CIFRHDGGRGFVEVKDF-GVPDTVKSMSWC--GENI 170 (823)
Q Consensus 97 -l~~~~L~~l~~~~~i~~~-kg~~~fa~~~~~~~l~V~~kkki-~l~~~~~~~~f~~~kei-~~~~~~~~l~~~--~~~i 170 (823)
|.+|++.+.+.+...... ..+.+++.+ ...++.+..... .++..... ......+ .-.+.+..+.+. ++.+
T Consensus 90 ~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (318)
T 4ggc_A 90 EVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA--EHHVATLSGHSQEVCGLRWAPDGRHL 165 (318)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred cEEEeecCCceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCC--ceeEEEEcCccCceEEEEEcCCCCEE
Confidence 999999876655443222 223333333 345666655544 33333222 1222222 224567777776 5567
Q ss_pred EEEEc-CceEEEEcCCCCeeecc--CCCCCCCCE--EEEccCC-eEEE-EeC---CeEEEEcCCCccccCCceeecCCCc
Q 003405 171 CIAIR-KGYMILNATNGALSEVF--PSGRIGPPL--VVSLLSG-ELLL-GKE---NIGVFVDQNGKLLQADRICWSEAPI 240 (823)
Q Consensus 171 ~v~~~-~~y~lidl~~~~~~~L~--~~~~~~~p~--i~~~~~~-EfLL-~~~---~~gvfv~~~G~~~~~~~i~w~~~P~ 240 (823)
+.|.. ....+.|+.+++..... .......++ +...+.+ .++. +.+ ...-+.+...... ...........
T Consensus 166 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-~~~~~~~~~v~ 244 (318)
T 4ggc_A 166 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-LSAVDAHSQVC 244 (318)
T ss_dssp EEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-EEEEECSSCEE
T ss_pred EEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc-cccccceeeee
Confidence 77776 45778899876532211 111111122 2223332 3332 222 2222333322211 11111122223
Q ss_pred EEEEe--CCEEEEEe---CCeEEEEEccCCCceeEEEe
Q 003405 241 AVIIQ--KPYAIALL---PRRVEVRSLRVPYALIQTIV 273 (823)
Q Consensus 241 ~v~~~--~PYll~~~---~~~ieV~~l~~~~~lvQ~i~ 273 (823)
.+.+. ..++++.. .+.|.|+++. ++..++++.
T Consensus 245 ~~~~~~~~~~~~~~sg~~d~~i~iwd~~-~~~~~~~l~ 281 (318)
T 4ggc_A 245 SILWSPHYKELISGHGFAQNQLVIWKYP-TMAKVAELK 281 (318)
T ss_dssp EEEEETTTTEEEEEECTTTCCEEEEETT-TCCEEEEEC
T ss_pred eeeecccccceEEEEEcCCCEEEEEECC-CCcEEEEEc
Confidence 33333 35666654 3679999997 578888775
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.06 E-value=1 Score=45.23 Aligned_cols=135 Identities=12% Similarity=0.034 Sum_probs=79.7
Q ss_pred CCCeeEEEEecccCceeeEeCc-EEEEeCCC-CcccccccC--CCCcEEEEeeCCCceEEEEEc---CeEEEEEEcCCCc
Q 003405 75 KKPILSMEVLASRQLLLSLSES-IAFHRLPN-LETIAVLTK--AKGANVYSWDDRRGFLCFARQ---KRVCIFRHDGGRG 147 (823)
Q Consensus 75 k~~I~qI~~~~~~~~Ll~l~d~-l~~~~L~~-l~~~~~i~~--~kg~~~fa~~~~~~~l~V~~k---kki~l~~~~~~~~ 147 (823)
...|..+...|..+.+++.+++ |.+|++.+ -+....... ...+..++++++...++++.. ....||.++....
T Consensus 41 ~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 120 (297)
T 2ojh_A 41 PELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG 120 (297)
T ss_dssp SSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC
T ss_pred CcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC
Confidence 5689999999999988888875 99999877 443322211 134556777877767777762 2466676653211
Q ss_pred eeEeeeecCCCCceEEEec--CCeEEEEE-c-CceEEE--EcCCCCeeeccCCCCCCCCEEEEccCCeEEE
Q 003405 148 FVEVKDFGVPDTVKSMSWC--GENICIAI-R-KGYMIL--NATNGALSEVFPSGRIGPPLVVSLLSGELLL 212 (823)
Q Consensus 148 f~~~kei~~~~~~~~l~~~--~~~i~v~~-~-~~y~li--dl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL 212 (823)
..+.+.....+.+++|. |..++++. . ....++ ++.++....+...... ...+...++++.++
T Consensus 121 --~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 121 --TPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGR-NDGPDYSPDGRWIY 188 (297)
T ss_dssp --CCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSC-EEEEEECTTSSEEE
T ss_pred --ceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCc-cccceECCCCCEEE
Confidence 12334444567888887 45566443 3 334444 4666666665543211 12234456776555
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=95.68 E-value=1.5 Score=44.03 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=90.7
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCC-CCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceee
Q 003405 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGS-SESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~vGT~~G~l~~y~~~~-~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~ 92 (823)
+..|.|++.. ++.|++|. +|.|++|++.. ... ...........|..+...|....+++
T Consensus 41 ~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~------------------~~~~~~~~~~~~~~~~~spdg~~l~~ 101 (297)
T 2ojh_A 41 PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP------------------EKVDTGFATICNNDHGISPDGALYAI 101 (297)
T ss_dssp SSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC------------------EECCCTTCCCBCSCCEECTTSSEEEE
T ss_pred CcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc------------------eEeccccccccccceEECCCCCEEEE
Confidence 3467777655 45677765 88999998764 221 11112222457888899999888888
Q ss_pred EeC----c--EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEE-E-EcCeEEEEEEcCC-CceeEeeeecCCCCceEE
Q 003405 93 LSE----S--IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCF-A-RQKRVCIFRHDGG-RGFVEVKDFGVPDTVKSM 163 (823)
Q Consensus 93 l~d----~--l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V-~-~kkki~l~~~~~~-~~f~~~kei~~~~~~~~l 163 (823)
.+. . |..+++.+-. ...+.....+..++++++...+++ + ..+.+.||.++.. .....+ ...+..+.++
T Consensus 102 ~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~ 178 (297)
T 2ojh_A 102 SDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL--THGEGRNDGP 178 (297)
T ss_dssp EECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC--CCSSSCEEEE
T ss_pred EEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc--ccCCCccccc
Confidence 872 2 5555554332 223334445777788887766664 3 4567788887532 222211 2335678899
Q ss_pred Eec--CCeEEEEEc--CceEEEEc--CCCCeeec
Q 003405 164 SWC--GENICIAIR--KGYMILNA--TNGALSEV 191 (823)
Q Consensus 164 ~~~--~~~i~v~~~--~~y~lidl--~~~~~~~L 191 (823)
+|. |..++++.. ....++++ .++....+
T Consensus 179 ~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 179 DYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI 212 (297)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred eECCCCCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence 997 456777663 34555554 44444444
No 143
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=95.68 E-value=0.28 Score=53.31 Aligned_cols=150 Identities=14% Similarity=0.224 Sum_probs=86.3
Q ss_pred EeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEec--------ccCceeeEeC
Q 003405 24 SYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLA--------SRQLLLSLSE 95 (823)
Q Consensus 24 ~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~--------~~~~Ll~l~d 95 (823)
..+..|..|..||++.+|+...... ..........+ +...|..+...| ..++|++.++
T Consensus 99 ~~~~~las~~~d~~v~lw~~~~~~~-------------~~~~~~~~~~g-H~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 99 VYSLFLACVCQDNTVRLIITKNETI-------------ITQHVLGGKSG-HHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEETTEE-------------EEEEEECTTTS-CSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcc-------------ceeeeecccCC-CCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 3445789999999999998664211 01111112223 367899999987 4567888886
Q ss_pred -c-EEEEeCCCCccccc-ccCCCCcEEEEeeCCCc-eEEEE-EcCeEEEEEEcCCCceeEee----------------e-
Q 003405 96 -S-IAFHRLPNLETIAV-LTKAKGANVYSWDDRRG-FLCFA-RQKRVCIFRHDGGRGFVEVK----------------D- 153 (823)
Q Consensus 96 -~-l~~~~L~~l~~~~~-i~~~kg~~~fa~~~~~~-~l~V~-~kkki~l~~~~~~~~f~~~k----------------e- 153 (823)
+ |++|++.+-.+... ......+.+++.+++.+ .++++ .++.|.+|.+..+....... .
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 4 99999865443322 23345677888887764 56666 44668888765321100000 0
Q ss_pred ------ecCCCCceEEEec---CCeEEEEEc-CceEEEEcCCCC
Q 003405 154 ------FGVPDTVKSMSWC---GENICIAIR-KGYMILNATNGA 187 (823)
Q Consensus 154 ------i~~~~~~~~l~~~---~~~i~v~~~-~~y~lidl~~~~ 187 (823)
....+.+.++.|. |..|+-+.. +...+.|+.+++
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~ 288 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN 288 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC
Confidence 0112466777775 344555544 456777877654
No 144
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.11 Score=59.24 Aligned_cols=149 Identities=9% Similarity=0.067 Sum_probs=93.2
Q ss_pred CcEEEEEEe-CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEE-Eecc-c-Cceee
Q 003405 17 PKIDAVASY-GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSME-VLAS-R-QLLLS 92 (823)
Q Consensus 17 ~~I~ci~~~-~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~-~~~~-~-~~Ll~ 92 (823)
..|+|++.. ++.|+.|+.||+|.+|++..... . ...+.+ +..+|..|. ..+. . +++++
T Consensus 267 ~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~--------------~---~~~~~~-H~~~V~sv~~~~s~~g~~~laS 328 (524)
T 2j04_B 267 SLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEV--------------P---SFYDQV-HDSYILSVSTAYSDFEDTVVST 328 (524)
T ss_dssp TCEEEEEESSSSEEEEEETTSEEEEEETTBCSS--------------C---SEEEEC-SSSCEEEEEEECCTTSCCEEEE
T ss_pred CCEEEEEecCCCeEEEEeCCCEEEEEECCCCCC--------------c---eEEeec-ccccEEEEEEEcCCCCCeEEEE
Confidence 578998864 46899999999999999864211 1 112232 367899995 3344 3 57777
Q ss_pred EeC-c-EEEEeCCCCccccccc-CCC--CcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeecCCCCceEEEec
Q 003405 93 LSE-S-IAFHRLPNLETIAVLT-KAK--GANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC 166 (823)
Q Consensus 93 l~d-~-l~~~~L~~l~~~~~i~-~~k--g~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~ 166 (823)
.+. + |++|++.+.+....+. ..+ ++..++.+++...++.+ ..+.|.++....+.....+. .-.+.|.+++|.
T Consensus 329 ~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~--gH~~~V~sva~S 406 (524)
T 2j04_B 329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV--SRETTITAIGVS 406 (524)
T ss_dssp EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE--ECSSCEEEEECC
T ss_pred eccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee--cCCCceEEEEeC
Confidence 775 5 9999987654332221 122 35667778765556655 45568887766432222222 234688999997
Q ss_pred --CCeEEEEEcCc-eEEEEcCC
Q 003405 167 --GENICIAIRKG-YMILNATN 185 (823)
Q Consensus 167 --~~~i~v~~~~~-y~lidl~~ 185 (823)
|..|+.|...+ ..+.|+..
T Consensus 407 p~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 407 RLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp SSCCBCEEEETTTEEECCBSCS
T ss_pred CCCCeEEEEECCCEEEEEechH
Confidence 45677777644 45666644
No 145
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=95.60 E-value=0.55 Score=49.09 Aligned_cols=153 Identities=14% Similarity=0.177 Sum_probs=94.1
Q ss_pred CCcEEEEEEe----CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecc--cCc
Q 003405 16 SPKIDAVASY----GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS--RQL 89 (823)
Q Consensus 16 ~~~I~ci~~~----~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~--~~~ 89 (823)
...|.|++.. ++.|+.|+.||.+.+|++.... +.....+.+ +..+|..+...|. ..+
T Consensus 57 ~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~----------------~~~~~~~~~-h~~~V~~v~~~p~~~g~~ 119 (316)
T 3bg1_A 57 EGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT----------------WEKSHEHAG-HDSSVNSVCWAPHDYGLI 119 (316)
T ss_dssp SSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC----------------CCEEEEECC-CSSCCCEEEECCTTTCSC
T ss_pred CccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc----------------ceEEEEccC-CCCceEEEEECCCCCCcE
Confidence 4579998863 5789999999999999875321 112223333 3578999999987 445
Q ss_pred eeeEeC-c-EEEEeCCCCcc---cccc-cCCCCcEEEEeeCCC-----------------ceEEEE-EcCeEEEEEEcCC
Q 003405 90 LLSLSE-S-IAFHRLPNLET---IAVL-TKAKGANVYSWDDRR-----------------GFLCFA-RQKRVCIFRHDGG 145 (823)
Q Consensus 90 Ll~l~d-~-l~~~~L~~l~~---~~~i-~~~kg~~~fa~~~~~-----------------~~l~V~-~kkki~l~~~~~~ 145 (823)
+++-+. + |++|++..-.. .... ....++..++.+++. ..++.+ ..+.|.+|....+
T Consensus 120 lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 199 (316)
T 3bg1_A 120 LACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED 199 (316)
T ss_dssp EEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT
T ss_pred EEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC
Confidence 665554 4 99999864311 1111 112345555554431 235555 4577888888643
Q ss_pred CceeEeeeecC-CCCceEEEecC------CeEEEEEc-CceEEEEcCC
Q 003405 146 RGFVEVKDFGV-PDTVKSMSWCG------ENICIAIR-KGYMILNATN 185 (823)
Q Consensus 146 ~~f~~~kei~~-~~~~~~l~~~~------~~i~v~~~-~~y~lidl~~ 185 (823)
..+...+.+.- .+.|.+++|.. +.|+.|.. ....+.|+.+
T Consensus 200 ~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 200 GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred CccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 33444444432 46789999973 34666665 4578888876
No 146
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=95.57 E-value=0.099 Score=58.07 Aligned_cols=159 Identities=11% Similarity=0.170 Sum_probs=94.1
Q ss_pred CCcEEEEEEe--CCEEEE----EeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecc-cC
Q 003405 16 SPKIDAVASY--GLKILL----GCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS-RQ 88 (823)
Q Consensus 16 ~~~I~ci~~~--~~~L~v----GT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~-~~ 88 (823)
+..|+|++.. ++.|++ |+.||.|.+|++.....+... ....+...+...+ +..+|..|..-|. .+
T Consensus 92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~-------~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~ 163 (434)
T 2oit_A 92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQ-------QKRPFAYHKLLKD-AGGMVIDMKWNPTVPS 163 (434)
T ss_dssp SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCS-------SCCCSEEEECCCS-GGGSEEEEEECSSCTT
T ss_pred CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcC-------CcceeeeeeccCC-CCCceEEEEECCCCCC
Confidence 3468888765 467884 678999999987542110000 0011111122222 3578999999997 56
Q ss_pred ceeeEeC-c-EEEEeCCCCccccc-ccCCCCcEEEEeeCCCceEEEEEc-CeEEEEEEcCCCceeEeeeecCC-------
Q 003405 89 LLLSLSE-S-IAFHRLPNLETIAV-LTKAKGANVYSWDDRRGFLCFARQ-KRVCIFRHDGGRGFVEVKDFGVP------- 157 (823)
Q Consensus 89 ~Ll~l~d-~-l~~~~L~~l~~~~~-i~~~kg~~~fa~~~~~~~l~V~~k-kki~l~~~~~~~~f~~~kei~~~------- 157 (823)
++++.+. + |++|++.+...... ......+++++++++...++++.. +.|.+|... +.. .+.+..+
T Consensus 164 ~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~---~~~~~~~~~~~~~~ 239 (434)
T 2oit_A 164 MVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE---KKVIPCPPFYESDH 239 (434)
T ss_dssp EEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE---EEEECCCTTCCTTS
T ss_pred EEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc---cccccCCcccCCCC
Confidence 6776664 5 99999876533221 222346888999988767888854 567777655 221 1222211
Q ss_pred -CCceEEEecCCe-EEEEEc-C--------ceEEEEcCCC
Q 003405 158 -DTVKSMSWCGEN-ICIAIR-K--------GYMILNATNG 186 (823)
Q Consensus 158 -~~~~~l~~~~~~-i~v~~~-~--------~y~lidl~~~ 186 (823)
..+.+++|.++. +++++. . ...++++.+.
T Consensus 240 ~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 240 PVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 278899998654 333332 2 2677887753
No 147
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.50 E-value=3.2 Score=44.96 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=39.7
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 304 GAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 304 ~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
......++..|++++|+.+++.....++ .........|..++..|+|++|...|.+
T Consensus 30 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 30 LELGKKLLAAGQLADALSQFHAAVDGDP-----DNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-----ccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3445567788999999999876421110 1234556678888999999999999886
No 148
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.47 E-value=5.5 Score=47.39 Aligned_cols=266 Identities=11% Similarity=0.054 Sum_probs=142.9
Q ss_pred CcEEEEEEeC-CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC
Q 003405 17 PKIDAVASYG-LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE 95 (823)
Q Consensus 17 ~~I~ci~~~~-~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d 95 (823)
..|.|++... +.|||||.+|-|..|+.... .+.....-...+...|..|...++.++.+...+
T Consensus 363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~----------------~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~ 426 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLWIGTDGGGINVFENGKR----------------VAIYNKENRELLSNSVLCSLKDSEGNLWFGTYL 426 (781)
T ss_dssp SCEEEEEECTTSCEEEEEBSSCEEEEETTEE----------------EEECC-----CCCSBEEEEEECTTSCEEEEETT
T ss_pred cceEEEEEcCCCCEEEEeCCCcEEEEECCCC----------------eEEEccCCCCCCCcceEEEEECCCCCEEEEecc
Confidence 4689998875 79999997666888864311 010000000123456888877766666555433
Q ss_pred -cEEEEeCCC--Ccccccc-cCCCCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEeeeec----CCCCceEEEec-
Q 003405 96 -SIAFHRLPN--LETIAVL-TKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFG----VPDTVKSMSWC- 166 (823)
Q Consensus 96 -~l~~~~L~~--l~~~~~i-~~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kei~----~~~~~~~l~~~- 166 (823)
||..++..+ ++..... .....+.+++.+. .+.+.|+....|..|....+ .|....... ....|.++...
T Consensus 427 ~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwigt~~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~d~ 504 (781)
T 3v9f_A 427 GNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWIGTHAGVFVIDLASK-KVIHHYDTSNSQLLENFVRSIAQDS 504 (781)
T ss_dssp EEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEEEETTEEEEEESSSS-SCCEEECTTTSSCSCSCEEEEEECT
T ss_pred CCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEEEECCceEEEeCCCC-eEEecccCcccccccceeEEEEEcC
Confidence 588877643 2211110 0123455555543 46788888887766665533 354333211 13567788766
Q ss_pred CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCC---EEEEccCCeEEEEeCCeEE--EEcCCCccccCCcee--ec-C
Q 003405 167 GENICIAIR-KGYMILNATNGALSEVFPSGRIGPP---LVVSLLSGELLLGKENIGV--FVDQNGKLLQADRIC--WS-E 237 (823)
Q Consensus 167 ~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p---~i~~~~~~EfLL~~~~~gv--fv~~~G~~~~~~~i~--w~-~ 237 (823)
++.|.+|+. .+...+|..+++...+......... .+..-.++.+.++.. .|+ .++..+.....-+.. .+ .
T Consensus 505 ~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~ 583 (781)
T 3v9f_A 505 EGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQRKEGLPNT 583 (781)
T ss_dssp TCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEECGGGTCSCC
T ss_pred CCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEccccCCCCCc
Confidence 457999998 7888899888766554432111111 222335677888776 344 345433211000000 00 1
Q ss_pred CCcEEEEe-CCEEEEEeCCeEEEEEccCCCceeEEEeeCCc---------ccccccCCeEEEeccceEEEeeccCh
Q 003405 238 APIAVIIQ-KPYAIALLPRRVEVRSLRVPYALIQTIVLQNV---------RHLIPSSNAVVVALENSIFGLFPVPL 303 (823)
Q Consensus 238 ~P~~v~~~-~PYll~~~~~~ieV~~l~~~~~lvQ~i~l~~~---------~~l~~~~~~v~v~s~~~I~~l~~~~~ 303 (823)
...+++.. .-.|...+.+++..++.. ...++.+...++ ......++.+++++.+-+..+.|..+
T Consensus 584 ~i~~i~~d~~g~lW~~t~~Gl~~~~~~--~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl~~f~p~~~ 657 (781)
T 3v9f_A 584 HIRAISEDKNGNIWASTNTGISCYITS--KKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSINGLCFFNPDIA 657 (781)
T ss_dssp CCCEEEECSSSCEEEECSSCEEEEETT--TTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEETTEEEEECSCCG
T ss_pred eEEEEEECCCCCEEEEcCCceEEEECC--CCceEEecccCCccccccccCceEECCCCEEEEECCCceEEEChhhc
Confidence 12344443 345555566677776653 233344432221 11223466788888888888887654
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=95.46 E-value=0.54 Score=48.81 Aligned_cols=132 Identities=11% Similarity=0.073 Sum_probs=80.9
Q ss_pred ceeeEeC-c-EEEEeCCCCcccccccCCC---CcEEEEeeCCCceEEEEEc--CeEEEEEEcCCCceeEeeeecCCC---
Q 003405 89 LLLSLSE-S-IAFHRLPNLETIAVLTKAK---GANVYSWDDRRGFLCFARQ--KRVCIFRHDGGRGFVEVKDFGVPD--- 158 (823)
Q Consensus 89 ~Ll~l~d-~-l~~~~L~~l~~~~~i~~~k---g~~~fa~~~~~~~l~V~~k--kki~l~~~~~~~~f~~~kei~~~~--- 158 (823)
++++.+. + |.+|++.+.+....+.... .+..++++++...++++.. +.|.+|....+ ...+.+..+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~ 79 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG---ETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC---CEEEEEECCBTTE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC---CeEeeEEcCCccc
Confidence 3444443 3 9999998776554443223 4677888887767777654 46666665533 2233444444
Q ss_pred ---CceEEEec--CCeEEEEE-------------cCceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEEEeCCeEEE
Q 003405 159 ---TVKSMSWC--GENICIAI-------------RKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVF 220 (823)
Q Consensus 159 ---~~~~l~~~--~~~i~v~~-------------~~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL~~~~~gvf 220 (823)
.|.+++|. |+.++++. .....++|+.+++....++.+.... .+...+++.+++..++....
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~i~~ 158 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQIT-MLAWARDGSKLYGLGRDLHV 158 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCC-CEEECTTSSCEEEESSSEEE
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcc-eeEECCCCCEEEEeCCeEEE
Confidence 78889997 55788885 3678899999887666555543211 23344666655544555555
Q ss_pred EcCC
Q 003405 221 VDQN 224 (823)
Q Consensus 221 v~~~ 224 (823)
++..
T Consensus 159 ~d~~ 162 (337)
T 1pby_B 159 MDPE 162 (337)
T ss_dssp EETT
T ss_pred EECC
Confidence 6653
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.41 E-value=1.6 Score=45.82 Aligned_cols=146 Identities=10% Similarity=0.187 Sum_probs=87.3
Q ss_pred EEeCCEEEEEe-CCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCC--------CCCeeEEEEecccCceeeE
Q 003405 23 ASYGLKILLGC-SDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFS--------KKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 23 ~~~~~~L~vGT-~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~--------k~~I~qI~~~~~~~~Ll~l 93 (823)
...++.||++. .+|.+.+|++..... ......+.... ...+..+.+.|..+ +++.
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~---------------~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~ 157 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGA---------------LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI 157 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSC---------------EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCC---------------eeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE
Confidence 34467899888 789999998764211 11111211111 12478899999888 4444
Q ss_pred e-C-c-EEEEeCC-C--Cccccc--ccCCCCcEEEEeeCCCceEEEE--EcCeEEEEEEcC-CCceeEeeeec-CC----
Q 003405 94 S-E-S-IAFHRLP-N--LETIAV--LTKAKGANVYSWDDRRGFLCFA--RQKRVCIFRHDG-GRGFVEVKDFG-VP---- 157 (823)
Q Consensus 94 ~-d-~-l~~~~L~-~--l~~~~~--i~~~kg~~~fa~~~~~~~l~V~--~kkki~l~~~~~-~~~f~~~kei~-~~---- 157 (823)
. + + |.+|++. + +..... .....+...++++++...++|+ ..+.+.+|.+.. +..+.....+. .+
T Consensus 158 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 237 (347)
T 3hfq_A 158 DLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT 237 (347)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred eCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence 3 2 3 9999986 2 222211 2223356678888877667776 346788998874 22344443332 23
Q ss_pred --CCceEEEec--CCeEEEEEc--CceEEEEcC
Q 003405 158 --DTVKSMSWC--GENICIAIR--KGYMILNAT 184 (823)
Q Consensus 158 --~~~~~l~~~--~~~i~v~~~--~~y~lidl~ 184 (823)
..|.+++|. |..++++.. ....++|+.
T Consensus 238 ~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 238 AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp SCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred CCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 347888887 456777765 457888886
No 151
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.35 E-value=1.2 Score=48.67 Aligned_cols=164 Identities=13% Similarity=0.128 Sum_probs=98.3
Q ss_pred CCEEEEEeCC------CcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC----
Q 003405 26 GLKILLGCSD------GSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE---- 95 (823)
Q Consensus 26 ~~~L~vGT~~------G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d---- 95 (823)
+++++.++++ |.|.+++..... .+.+.. +...|..+..-|..+.++..+.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~-------------------~~~l~~-~~~~v~~~~~Spdg~~la~~s~~~~~ 202 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN-------------------QFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGR 202 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS-------------------CEEEEE-ESSCEEEEEECTTSSEEEEEECTTSS
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC-------------------CEEEeC-CCCcceeeEEcCCCCEEEEEEecCCC
Confidence 5566555554 789999875321 112222 2468999999999888888774
Q ss_pred -cEEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEE--cCeEEEEEEcC-CCceeEeeeecCCCCceEEEec--CCe
Q 003405 96 -SIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHDG-GRGFVEVKDFGVPDTVKSMSWC--GEN 169 (823)
Q Consensus 96 -~l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~~-~~~f~~~kei~~~~~~~~l~~~--~~~ 169 (823)
.|.+|++.+-+..........+..++++++...|+++. .+...||.|+. +.....+ ...+..+.+++|. |..
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l--~~~~~~~~~~~~spdg~~ 280 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV--TDGRSNNTEPTWFPDSQN 280 (415)
T ss_dssp CEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC--CCCSSCEEEEEECTTSSE
T ss_pred cEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeC--cCCCCcccceEECCCCCE
Confidence 28999987654332112223567888888877777553 23334555542 2122222 1234578889997 556
Q ss_pred EEEEEcC----ceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE
Q 003405 170 ICIAIRK----GYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL 212 (823)
Q Consensus 170 i~v~~~~----~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL 212 (823)
|+++... ...++|+.+++...+...+.. .-.+...+++.+|+
T Consensus 281 l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~-~~~~~~spdG~~l~ 326 (415)
T 2hqs_A 281 LAFTSDQAGRPQVYKVNINGGAPQRITWEGSQ-NQDADVSSDGKFMV 326 (415)
T ss_dssp EEEEECTTSSCEEEEEETTSSCCEECCCSSSE-EEEEEECTTSSEEE
T ss_pred EEEEECCCCCcEEEEEECCCCCEEEEecCCCc-ccCeEECCCCCEEE
Confidence 8888763 467779988876655433211 11234457777766
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.29 E-value=0.51 Score=49.72 Aligned_cols=158 Identities=11% Similarity=0.126 Sum_probs=94.9
Q ss_pred cEEEEEEe--CCEEEEEe-CCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe
Q 003405 18 KIDAVASY--GLKILLGC-SDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 18 ~I~ci~~~--~~~L~vGT-~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
.+.|++.. ++ +|+.. .+|.+.+|++.... .......+.......+..+..-|+.+.+++.+
T Consensus 142 ~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g---------------~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~ 205 (347)
T 3hfq_A 142 HIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAG---------------QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAG 205 (347)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEEEECTTS---------------CEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CceEEEECCCCc-EEEEeCCCCEEEEEEECCCC---------------cEEEeeeEEcCCCCCCceEEECCCCCEEEEEe
Confidence 36555544 34 66654 57789999876211 11111121111233567888899888777765
Q ss_pred C--c-EEEEeCCC----CcccccccCC-------CCcEEEEeeCCCceEEEEE--cCeEEEEEEcCCCceeEeeeecC-C
Q 003405 95 E--S-IAFHRLPN----LETIAVLTKA-------KGANVYSWDDRRGFLCFAR--QKRVCIFRHDGGRGFVEVKDFGV-P 157 (823)
Q Consensus 95 d--~-l~~~~L~~----l~~~~~i~~~-------kg~~~fa~~~~~~~l~V~~--kkki~l~~~~~~~~f~~~kei~~-~ 157 (823)
. + +.+|++.. +.....+... .++..++++++...++|+. .+.|.+|.+..+..+..+..+.. .
T Consensus 206 ~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~ 285 (347)
T 3hfq_A 206 ELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEG 285 (347)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSS
T ss_pred CCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCC
Confidence 4 3 88888753 2112121111 2366788888877776763 47799999864324555555555 3
Q ss_pred CCceEEEec--CCeEEEEEc--CceEEE--EcCCCCeeec
Q 003405 158 DTVKSMSWC--GENICIAIR--KGYMIL--NATNGALSEV 191 (823)
Q Consensus 158 ~~~~~l~~~--~~~i~v~~~--~~y~li--dl~~~~~~~L 191 (823)
..|.+++|. |..|+++.. ....++ |..+|+...+
T Consensus 286 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 286 DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLL 325 (347)
T ss_dssp SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence 468999997 557888876 346677 5566766544
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=95.24 E-value=0.26 Score=51.60 Aligned_cols=69 Identities=7% Similarity=0.059 Sum_probs=44.4
Q ss_pred EeeC-CCceEEEEEcCeEEEEEEcCCCceeEeeeecCCCCceEEEec--CCeEEEEEc-CceEEEEcCCCCeeeccC
Q 003405 121 SWDD-RRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GENICIAIR-KGYMILNATNGALSEVFP 193 (823)
Q Consensus 121 a~~~-~~~~l~V~~kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~--~~~i~v~~~-~~y~lidl~~~~~~~L~~ 193 (823)
++++ +...++++ .+.|.+|....+ +..+.+..+..+.+++|. |+.|+++.. ....++|+.+++...-++
T Consensus 261 ~~sp~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 261 LRSPKDPNQIYGV-LNRLAKYDLKQR---KLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EECSSCTTEEEEE-ESEEEEEETTTT---EEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EecCCCCCEEEEE-cCeEEEEECccC---eEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 3345 55566666 667777766532 334455667788899997 456777644 457889998876544443
No 154
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.24 E-value=7 Score=46.53 Aligned_cols=262 Identities=11% Similarity=0.121 Sum_probs=143.1
Q ss_pred CcEEEEEEeC-CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeee----c-CCCCCCeeEEEEecccC-c
Q 003405 17 PKIDAVASYG-LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTI----S-GFSKKPILSMEVLASRQ-L 89 (823)
Q Consensus 17 ~~I~ci~~~~-~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~----~-~~~k~~I~qI~~~~~~~-~ 89 (823)
..|.|+.... +.|+|||.+|-|..|+.... .+.....- . ..+...|..|...++.+ +
T Consensus 357 ~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~----------------~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~l 420 (795)
T 4a2l_A 357 NVVSCIVEDKDKNLWIGTNDGGLNLYNPITQ----------------RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLV 420 (795)
T ss_dssp SSEEEEEECTTSCEEEEESSSCEEEECTTTC----------------CEEEECCC------CCSCSCEEEEEEETTTTEE
T ss_pred CeeEEEEECCCCCEEEEECCCCeEEEcCCCC----------------cEEEEecCCCCcccCCCCccEEEEEEcCCCCEE
Confidence 4689988764 69999999977888874321 11110000 0 12235688887777766 5
Q ss_pred eeeEeC-cEEEEeCCCCc--cccc-c--cCCCCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEeeee----cC-CC
Q 003405 90 LLSLSE-SIAFHRLPNLE--TIAV-L--TKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDF----GV-PD 158 (823)
Q Consensus 90 Ll~l~d-~l~~~~L~~l~--~~~~-i--~~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kei----~~-~~ 158 (823)
.+...+ ||..++..+-+ .... - .....+.+++.+. .+.|.|+..+.|..|....+ .|...... .+ ..
T Consensus 421 Wigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt~~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~ 498 (795)
T 4a2l_A 421 YIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLGTLSALVRFNPEQR-SFTTIEKEKDGTPVVSK 498 (795)
T ss_dssp EEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEEESSCEEEEETTTT-EEEECCBCTTCCBCCCC
T ss_pred EEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEEecCceeEEeCCCC-eEEEccccccccccCCc
Confidence 544433 68888765422 1111 0 0123455555544 46788888777766665433 45443221 22 24
Q ss_pred CceEEEec-CCeEEEEEcCceEEEEcCCCCeeeccCC-CCC---CCC--EEEEccCCeEEEEeCCeEEE-EcCCCccccC
Q 003405 159 TVKSMSWC-GENICIAIRKGYMILNATNGALSEVFPS-GRI---GPP--LVVSLLSGELLLGKENIGVF-VDQNGKLLQA 230 (823)
Q Consensus 159 ~~~~l~~~-~~~i~v~~~~~y~lidl~~~~~~~L~~~-~~~---~~p--~i~~~~~~EfLL~~~~~gvf-v~~~G~~~~~ 230 (823)
.+.++... ++.|.+|+..+...+|..+++. .+... ... ... .+..-.++.+.++..+ |++ ++..+....
T Consensus 499 ~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~- 575 (795)
T 4a2l_A 499 QITTLFRDSHKRLWIGGEEGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIK- 575 (795)
T ss_dssp CEEEEEECTTCCEEEEESSCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEE-
T ss_pred eEEEEEECCCCCEEEEeCCceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEE-
Confidence 67777776 4579999999999999887765 32211 010 011 2233356788887766 543 554433211
Q ss_pred Cceee-cCCC----cEEEEe-CCEEEEEeCCeEEEEEccCCCceeEEEeeCCc---------ccccccCCeEEEeccceE
Q 003405 231 DRICW-SEAP----IAVIIQ-KPYAIALLPRRVEVRSLRVPYALIQTIVLQNV---------RHLIPSSNAVVVALENSI 295 (823)
Q Consensus 231 ~~i~w-~~~P----~~v~~~-~PYll~~~~~~ieV~~l~~~~~lvQ~i~l~~~---------~~l~~~~~~v~v~s~~~I 295 (823)
.+.- .+-| .++... .-.|.+-+.+++..++.. +. .++.+...++ ......++.+++++.+-+
T Consensus 576 -~~~~~~gl~~~~i~~i~~d~~g~lWi~t~~Gl~~~~~~-~~-~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl 652 (795)
T 4a2l_A 576 -RYNTTNGLPNNVVYGILEDSFGRLWLSTNRGISCFNPE-TE-KFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGINGI 652 (795)
T ss_dssp -EECGGGTCSCSCEEEEEECTTSCEEEEETTEEEEEETT-TT-EEEEECGGGTCSCSCEEEEEEEECTTSCEEEEETTEE
T ss_pred -EeCCCCCCchhheEEEEECCCCCEEEEcCCceEEEcCC-CC-cEEEcCCcCCCccccCccCceeECCCCeEEEecCCce
Confidence 0100 1112 233333 345666667777777764 22 3344432221 112234567888888888
Q ss_pred EEeeccC
Q 003405 296 FGLFPVP 302 (823)
Q Consensus 296 ~~l~~~~ 302 (823)
.++.|..
T Consensus 653 ~~~~p~~ 659 (795)
T 4a2l_A 653 TTFRPEL 659 (795)
T ss_dssp EEECGGG
T ss_pred EEEcHHH
Confidence 8888753
No 155
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.11 E-value=0.67 Score=55.55 Aligned_cols=190 Identities=9% Similarity=0.126 Sum_probs=105.2
Q ss_pred CcEEEEEEeC-CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeee-eecCCCCCCeeEEEEecccCceeeEe
Q 003405 17 PKIDAVASYG-LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELER-TISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 17 ~~I~ci~~~~-~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~-~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
+.|.||.... ++|+|||.+| |..|+-..- ..|.... .-...+...|..|...++..+.+.-.
T Consensus 43 n~v~~I~qD~~G~lWigT~~G-L~ryDG~~f---------------~~~~~~~~~~~~l~~n~I~~i~~d~~g~lWigT~ 106 (795)
T 4a2l_A 43 STVFSIDQDKRGNMWFATYDG-VNKYDGYAF---------------TVYQHNEDDPNSIANDISRIVKTDSQGRVWIGTR 106 (795)
T ss_dssp SCEEEEEECTTSCEEEEETTE-EEEECSSCE---------------EEECCCTTCTTSCSCSCEEEEEECTTSCEEEEES
T ss_pred ceeEEEEEcCCCCEEEeecCc-CcccCCCce---------------EEEeCCCCCCCcccccceeEEEECCCCCEEEEeC
Confidence 4799998875 6999999999 577862210 0110000 00112345688887777655554433
Q ss_pred CcEEEEeCCCC--cccccccCC--CCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEeeeecCC-CC-ceEEEec-C
Q 003405 95 ESIAFHRLPNL--ETIAVLTKA--KGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVP-DT-VKSMSWC-G 167 (823)
Q Consensus 95 d~l~~~~L~~l--~~~~~i~~~--kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kei~~~-~~-~~~l~~~-~ 167 (823)
+|+..|+..+- ......... ..+..++.+. .+.+.|+..+.|..|....+ .|..... ..+ .. +.++... +
T Consensus 107 ~Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~-~g~lwi~t~~gl~~~~~~~~-~~~~~~~-~~~~~~~i~~i~~d~~ 183 (795)
T 4a2l_A 107 DGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEIS-PEQLLISTPEGLIMFDIKES-KFIDDSF-STAMHKTIASTLYRQG 183 (795)
T ss_dssp SCEEEEETTTTEEEEECCEETTEECCCCEEEEEE-TTEEEEEETTEEEEEETTTT-EEECSSS-CHHHHTCCEEEEEEET
T ss_pred CchheeCCCCCeEEeccccccCCCceEEEEEECC-CCCEEEEECCceEEEECCCC-EEEeccC-CCCCCcceEEEEECCC
Confidence 47999987542 221110000 0155665553 36788888887766654322 3432211 111 12 7777765 6
Q ss_pred CeEEEEEc-CceEEEEcCCCCeeeccCCCCCCC-CEEEEccCCeEEEEeCCeEE-EEcCCC
Q 003405 168 ENICIAIR-KGYMILNATNGALSEVFPSGRIGP-PLVVSLLSGELLLGKENIGV-FVDQNG 225 (823)
Q Consensus 168 ~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~-p~i~~~~~~EfLL~~~~~gv-fv~~~G 225 (823)
+.+++|+. .+...+|..+++...+.+...... -.+..-.++.+.++..+.|+ .++..+
T Consensus 184 g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~ 244 (795)
T 4a2l_A 184 DQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKT 244 (795)
T ss_dssp TEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTT
T ss_pred CCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCC
Confidence 78999997 588899988887665532211111 11223356788887754444 356543
No 156
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.07 E-value=5.6 Score=47.08 Aligned_cols=153 Identities=12% Similarity=0.128 Sum_probs=89.7
Q ss_pred CCcEEEEEEeC-CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe
Q 003405 16 SPKIDAVASYG-LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 16 ~~~I~ci~~~~-~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
.+.|.|+.... ++|+|||.+| |..|+-.. +..-..........|..|...+.. .|-+-+
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~------------------~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT 80 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKG-LFSYDGYS------------------TQQHFTYGENNNTRIYCGVIIDNT-YLYMGT 80 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSC-EEEECSSC------------------EEECSCTTSTTSSCEEEEEEETTT-EEEEEE
T ss_pred cceEEEEEECCCCCEEEEECCC-ccccCCCc------------------eEEEEccCCCCCceEEEEEEcCCC-cEEEEe
Confidence 45899998875 6999999999 56786211 100000011223468887766654 444445
Q ss_pred C-cEEEEeCCCCcccccc-cCCCCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEee--eecCC-CCceEEEec-CC
Q 003405 95 E-SIAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVK--DFGVP-DTVKSMSWC-GE 168 (823)
Q Consensus 95 d-~l~~~~L~~l~~~~~i-~~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~k--ei~~~-~~~~~l~~~-~~ 168 (823)
+ |+..|+..+....... .....+.+++. ..+.|.|+..+.|..|....+ .|.... .-.++ ..+.++... ++
T Consensus 81 ~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~--~~g~lWigt~~Gl~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g 157 (758)
T 3ott_A 81 DNGILVYNYRADRYEQPETDFPTDVRTMAL--QGDTLWLGALNGLYTYQLQSR-KLTSFDTRRNGLPNNTIYSIIRTKDN 157 (758)
T ss_dssp TTEEEEEETTTTEECCCSCCCCSCEEEEEE--ETTEEEEEETTEEEEEETTTC-CEEEECHHHHCCSCSCEEEEEECTTC
T ss_pred CCCeEEEeCCCCEEECcccCCCceEEEEEe--cCCcEEEEcCCcceeEeCCCC-eEEEeccCCCCcCCCeEEEEEEcCCC
Confidence 5 7888887543221110 11123555543 346899998886655554422 454431 11233 356677665 56
Q ss_pred eEEEEEcCceEEEEcCCCCeeec
Q 003405 169 NICIAIRKGYMILNATNGALSEV 191 (823)
Q Consensus 169 ~i~v~~~~~y~lidl~~~~~~~L 191 (823)
.|++|+..+...+|..+++...+
T Consensus 158 ~lWigt~~Gl~~~~~~~~~~~~~ 180 (758)
T 3ott_A 158 QIYVGTYNGLCRYIPSNGKFEGI 180 (758)
T ss_dssp CEEEEETTEEEEEETTTTEEEEE
T ss_pred CEEEEeCCCHhhCccCCCceEEe
Confidence 79999998888899887765443
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=94.97 E-value=0.49 Score=52.39 Aligned_cols=159 Identities=14% Similarity=0.183 Sum_probs=90.1
Q ss_pred EEEEEE--eCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE---
Q 003405 19 IDAVAS--YGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL--- 93 (823)
Q Consensus 19 I~ci~~--~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l--- 93 (823)
+++++. .++.+++|..+| +.++.............+...+ ........+. ...+|..+..-+..+.|++.
T Consensus 39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKI--VDKVQGLLVP--MKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCE--EECCCCEEEC--CSSCEEEEEECTTSCEEEEEEEE
T ss_pred ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccc--cccCcccccc--CCCcccEEEEcCCCCEEEEEEec
Confidence 454444 467999999999 6666533110000000000000 0000001111 24579999999988877753
Q ss_pred -e-Cc-EEEEeCCCC--------cccccccC----CCCcEEEEeeCC-CceEEEE-EcCeEEEEEEcCCCceeEeeeecC
Q 003405 94 -S-ES-IAFHRLPNL--------ETIAVLTK----AKGANVYSWDDR-RGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGV 156 (823)
Q Consensus 94 -~-d~-l~~~~L~~l--------~~~~~i~~----~kg~~~fa~~~~-~~~l~V~-~kkki~l~~~~~~~~f~~~kei~~ 156 (823)
+ |+ |++|++.+. ++...+.. ...++.++++++ ...++.+ ..+.|.+|....+. ........
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~--~~~~~~~~ 191 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV--KVCATLPS 191 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE--EEEEEECG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc--ceeeccCC
Confidence 2 23 999997543 11111111 346788888887 3456655 56778888887431 11111223
Q ss_pred CCCceEEEec--CCeEEEEEcC-ceEEEEcC
Q 003405 157 PDTVKSMSWC--GENICIAIRK-GYMILNAT 184 (823)
Q Consensus 157 ~~~~~~l~~~--~~~i~v~~~~-~y~lidl~ 184 (823)
.+.+.+++|. |+.|+.|... ...++|+.
T Consensus 192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred CCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 4689999997 6678888874 57788987
No 158
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.73 Score=52.56 Aligned_cols=151 Identities=13% Similarity=0.121 Sum_probs=92.7
Q ss_pred cEEEEE--EeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCC---CCCCeeEEEEecccCceee
Q 003405 18 KIDAVA--SYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGF---SKKPILSMEVLASRQLLLS 92 (823)
Q Consensus 18 ~I~ci~--~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~---~k~~I~qI~~~~~~~~Ll~ 92 (823)
.|.|++ ..|+.|++|+.||.|.+|++..... +.+.|...++++.. +...|..+..-|+. ++.+
T Consensus 131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l-----------~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laas 198 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSE-----------NTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAA 198 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEECCCCTT-----------TCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcc-----------ccccceeeeeeecccccccccEEEEEEcCCc-EEEE
Confidence 488887 5568999999999999999875321 11122334444221 35689999999987 4444
Q ss_pred EeCc-EEEEeCCCCccc---cccc--CCCCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEeeeecCCCCceEEEe-
Q 003405 93 LSES-IAFHRLPNLETI---AVLT--KAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSW- 165 (823)
Q Consensus 93 l~d~-l~~~~L~~l~~~---~~i~--~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~- 165 (823)
-.|+ +++|++.+-... ..+. ....|..++.. + ..++++..+.|.+|...++ .....+ ..-.+.+.++++
T Consensus 199 s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-g-~~LASa~~~tIkLWd~~~~-~~~~~~-~gh~~~V~~va~~ 274 (588)
T 2j04_A 199 LSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-D-YKVVLTCPGYVHKIDLKNY-SISSLK-TGSLENFHIIPLN 274 (588)
T ss_dssp ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-T-TEEEEECSSEEEEEETTTT-EEEEEE-CSCCSCCCEEEET
T ss_pred eCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-C-CEEEEEeCCeEEEEECCCC-eEEEEE-cCCCceEEEEEee
Confidence 4454 999998654321 1221 11245555555 2 5788888889999988744 232222 123467788888
Q ss_pred -cCC--eEEEEEcCceEEEEcC
Q 003405 166 -CGE--NICIAIRKGYMILNAT 184 (823)
Q Consensus 166 -~~~--~i~v~~~~~y~lidl~ 184 (823)
..+ .+.+|..++-.+...+
T Consensus 275 ~s~d~~~La~a~edG~klw~~d 296 (588)
T 2j04_A 275 HEKESTILLMSNKTSYKVLLED 296 (588)
T ss_dssp TCSSCEEEEECSSCEEEEEESS
T ss_pred eCCCCCEEEEEcCCCCEEEeec
Confidence 544 3555554444454443
No 159
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=94.86 E-value=3.6 Score=45.26 Aligned_cols=251 Identities=12% Similarity=0.039 Sum_probs=140.1
Q ss_pred EeCCEEEEEeCC-----CcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe----
Q 003405 24 SYGLKILLGCSD-----GSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS---- 94 (823)
Q Consensus 24 ~~~~~L~vGT~~-----G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~---- 94 (823)
.+++++||.... |.|.+++... .+.+.++. .+..| .|.+-|+.+.+.+..
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t------------------~~vv~~I~-vG~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGST------------------GRILGMTD-GGFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTT------------------TEEEEEEE-ECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCC------------------CEEEEEEE-CCCCC--ceEECCCCCEEEEEecccc
Confidence 356789998774 6888888542 23344443 23567 899999988877764
Q ss_pred -------C-cEEEEeCCCCcccccccC--------CCCcEEEEeeCCCceEEEEE---cCeEEEEEEcCCCceeEeeeec
Q 003405 95 -------E-SIAFHRLPNLETIAVLTK--------AKGANVYSWDDRRGFLCFAR---QKRVCIFRHDGGRGFVEVKDFG 155 (823)
Q Consensus 95 -------d-~l~~~~L~~l~~~~~i~~--------~kg~~~fa~~~~~~~l~V~~---kkki~l~~~~~~~~f~~~kei~ 155 (823)
+ .|.++|..+++.+..+.- ..+...++++++...+.|+. .+.|.++.... .+.++++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t---~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG---KTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT---TEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC---CeEEEEEE
Confidence 2 399999988876655431 12344578888887888874 35677776662 34556777
Q ss_pred CCCCceEEEecCCeEEEEEc--CceEEEEcCCCCee----eccCCCCCCCCEEE---EccC-CeEEE-EeCCeEEEEcCC
Q 003405 156 VPDTVKSMSWCGENICIAIR--KGYMILNATNGALS----EVFPSGRIGPPLVV---SLLS-GELLL-GKENIGVFVDQN 224 (823)
Q Consensus 156 ~~~~~~~l~~~~~~i~v~~~--~~y~lidl~~~~~~----~L~~~~~~~~p~i~---~~~~-~EfLL-~~~~~gvfv~~~ 224 (823)
+++. ..+.-.|...+++.. .....+++.++++. ..+..+. .|+.. ..++ +.+++ ..++....+|..
T Consensus 218 v~g~-~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~--~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~ 294 (426)
T 3c75_H 218 VPDC-YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTED--ELLINHPAFSLRSGRLVWPTYTGKIFQADLT 294 (426)
T ss_dssp CCSE-EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTT--SCBCSCCEECTTTCEEEEEBTTSEEEEEEEC
T ss_pred cCCc-eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCC--CceeeEeeecCCCCEEEEEeCCCcEEEEecc
Confidence 7653 122222333333332 45677777666554 2344332 23221 1222 34433 334444455554
Q ss_pred Ccccc-CCce----------ee-cCCCcEEEEe--CCEEEEEe-----------CCeEEEEEccCCCceeEEEeeCC-cc
Q 003405 225 GKLLQ-ADRI----------CW-SEAPIAVIIQ--KPYAIALL-----------PRRVEVRSLRVPYALIQTIVLQN-VR 278 (823)
Q Consensus 225 G~~~~-~~~i----------~w-~~~P~~v~~~--~PYll~~~-----------~~~ieV~~l~~~~~lvQ~i~l~~-~~ 278 (823)
|.... ..++ .| +.....+++. ..++++.. ++.|.|.+.. +...+.+|++.. ..
T Consensus 295 ~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~-T~kvv~~I~vg~~P~ 373 (426)
T 3c75_H 295 AEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE-TGERINKIELGHEID 373 (426)
T ss_dssp SSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT-TCCEEEEEEEEEEEC
T ss_pred CCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC-CCeEEEEEECCCCcC
Confidence 32110 0111 12 1111223443 45666654 2469999986 689999998765 22
Q ss_pred --cccccCC-eEEEec--cceEEEeeccC
Q 003405 279 --HLIPSSN-AVVVAL--ENSIFGLFPVP 302 (823)
Q Consensus 279 --~l~~~~~-~v~v~s--~~~I~~l~~~~ 302 (823)
.+...++ .+|++. ++.|..+....
T Consensus 374 gia~spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 374 SINVSQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp EEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred eEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence 2234455 566654 46666665544
No 160
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=94.85 E-value=2.8 Score=48.03 Aligned_cols=213 Identities=13% Similarity=0.094 Sum_probs=127.4
Q ss_pred CceeeEe-C-c-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEEc-CeEEEEEEcCCCceeEeeeecCCCCceEE
Q 003405 88 QLLLSLS-E-S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQ-KRVCIFRHDGGRGFVEVKDFGVPDTVKSM 163 (823)
Q Consensus 88 ~~Ll~l~-d-~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~k-kki~l~~~~~~~~f~~~kei~~~~~~~~l 163 (823)
+++++.. + + |.+++..+.+.+..+......+.++++++...++|+.. ..|.+|..... ..+.++++.....|.++
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~-t~~~v~~i~~G~~P~~i 245 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK-EPTTVAEIKIGSEARSI 245 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSS-SCCEEEEEECCSEEEEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCC-CCcEeEEEecCCCCcee
Confidence 4444443 3 3 99999988877766666667788888988778888765 35666665311 23456677777789999
Q ss_pred Eec------CCeEEEEEc--CceEEEEcCCCCeeeccCCCC---C-----CCCEE--E-Ec-cCCeEEEEeC--CeEEEE
Q 003405 164 SWC------GENICIAIR--KGYMILNATNGALSEVFPSGR---I-----GPPLV--V-SL-LSGELLLGKE--NIGVFV 221 (823)
Q Consensus 164 ~~~------~~~i~v~~~--~~y~lidl~~~~~~~L~~~~~---~-----~~p~i--~-~~-~~~EfLL~~~--~~gvfv 221 (823)
++. |..+++++. ..+.++|..+.+....++.+. . ..|-+ + .. ...+|++... +...++
T Consensus 246 a~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v 325 (567)
T 1qks_A 246 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 325 (567)
T ss_dssp EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence 987 457887765 678999998887655554321 0 01211 1 12 2356666432 344556
Q ss_pred cCCCcc-ccCCceeecCCCcEEEEe--CCEEEEEe--CCeEEEEEccCCCceeEEEee-CCc-------ccccccCCeEE
Q 003405 222 DQNGKL-LQADRICWSEAPIAVIIQ--KPYAIALL--PRRVEVRSLRVPYALIQTIVL-QNV-------RHLIPSSNAVV 288 (823)
Q Consensus 222 ~~~G~~-~~~~~i~w~~~P~~v~~~--~PYll~~~--~~~ieV~~l~~~~~lvQ~i~l-~~~-------~~l~~~~~~v~ 288 (823)
|..... .....|.-...|..+.+. .-|+++.. ++.|.|+++. ++.++.+++. ... .+..+.++.++
T Consensus 326 d~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~-t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~ 404 (567)
T 1qks_A 326 DYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK-EGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW 404 (567)
T ss_dssp ETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT-TTEEEEEEECSSSSBCCTTCEEEEETTTEEEE
T ss_pred ecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECC-CCcEEEEEeccCcCCCCccceeeECCCCCcEE
Confidence 643310 001122222344455554 34666655 4789999997 5888888887 322 12223345676
Q ss_pred Eec---cceEEEeeccC
Q 003405 289 VAL---ENSIFGLFPVP 302 (823)
Q Consensus 289 v~s---~~~I~~l~~~~ 302 (823)
+++ ++.|..+..-|
T Consensus 405 ~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 405 ATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEEBSSSSEEEEEECCT
T ss_pred EeCCCCCCeEEEecCCC
Confidence 654 35677776554
No 161
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=94.77 E-value=2.9 Score=49.85 Aligned_cols=192 Identities=9% Similarity=0.118 Sum_probs=110.7
Q ss_pred ccCCC-CcEEEEEEeC-CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeee--ec----CCCCCCeeEEEE
Q 003405 12 ISNCS-PKIDAVASYG-LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERT--IS----GFSKKPILSMEV 83 (823)
Q Consensus 12 ~~~~~-~~I~ci~~~~-~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~--~~----~~~k~~I~qI~~ 83 (823)
-..++ +.|.||.... ++|+|||.+| |..|+-.. ++.-+. .. ......|..|..
T Consensus 13 ~~gLs~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~------------------f~~~~~~~~~~~~~~l~~n~I~~i~~ 73 (781)
T 3v9f_A 13 EQGLSNNYVLSITQDKQGFLWFATEEG-LNKFDGTR------------------FITYYKEEQSSSVQSITGNELNEVYT 73 (781)
T ss_dssp GGTCSCSBEEEEEECTTSCEEEEESSC-EEEECSSS------------------EEEECCCSSCSSSCCCSCSCEEEEEE
T ss_pred CCCCccCEeEEEEECCCCCEEEccCCc-CccccCCc------------------eEEEEcCCCCCccccccccccceEEE
Confidence 34444 5899998886 6999999999 67786221 111100 00 122356888887
Q ss_pred ecccC-ceeeEeC-cEEEEeCCC--Ccccc-c---cc--CCCCcEEEEeeCC-CceEEEEE-cCeEEEEEEcCCCceeEe
Q 003405 84 LASRQ-LLLSLSE-SIAFHRLPN--LETIA-V---LT--KAKGANVYSWDDR-RGFLCFAR-QKRVCIFRHDGGRGFVEV 151 (823)
Q Consensus 84 ~~~~~-~Ll~l~d-~l~~~~L~~--l~~~~-~---i~--~~kg~~~fa~~~~-~~~l~V~~-kkki~l~~~~~~~~f~~~ 151 (823)
.+..+ +-+.-.+ |+..|+..+ +.... . .. ....+..++.+.. .+.|.|+. .+.|..|....+ .|...
T Consensus 74 d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~-~~~~~ 152 (781)
T 3v9f_A 74 DPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATG-KFTHY 152 (781)
T ss_dssp CSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETTTT-EEEEE
T ss_pred cCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECCCC-eEEee
Confidence 77666 5554445 698888753 22210 0 00 1124666666541 46788887 777766665433 45443
Q ss_pred ee--e-cCC-CCceEEEec-CCeEEEEEcC-ceEEEEcCCCCeeeccCCCC-----CCCCE--EEEccCCeEEEEeCCeE
Q 003405 152 KD--F-GVP-DTVKSMSWC-GENICIAIRK-GYMILNATNGALSEVFPSGR-----IGPPL--VVSLLSGELLLGKENIG 218 (823)
Q Consensus 152 ke--i-~~~-~~~~~l~~~-~~~i~v~~~~-~y~lidl~~~~~~~L~~~~~-----~~~p~--i~~~~~~EfLL~~~~~g 218 (823)
.. . .++ ..+.++... ++.|++|+.. +...+|..+++......... ....+ +..-.++.+.++..+ |
T Consensus 153 ~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-G 231 (781)
T 3v9f_A 153 NKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-G 231 (781)
T ss_dssp STTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEETT-E
T ss_pred ccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-c
Confidence 21 1 122 356777665 6789999986 88889988876554432110 01122 223356788888877 6
Q ss_pred EE-EcCC
Q 003405 219 VF-VDQN 224 (823)
Q Consensus 219 vf-v~~~ 224 (823)
++ ++..
T Consensus 232 l~~~d~~ 238 (781)
T 3v9f_A 232 LALFNAN 238 (781)
T ss_dssp EEEEETT
T ss_pred HheECCC
Confidence 64 5654
No 162
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=94.33 E-value=4.7 Score=40.18 Aligned_cols=186 Identities=12% Similarity=0.057 Sum_probs=99.6
Q ss_pred cEEEEEEe-CCEEEE-E-eCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe
Q 003405 18 KIDAVASY-GLKILL-G-CSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 18 ~I~ci~~~-~~~L~v-G-T~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
...+++.. +++||+ + +.+|.|..|+..... . ..........+..|.+.++.++.++-.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~----------------~---~~~~~~~~~~p~~i~~~~~g~l~v~~~ 85 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG----------------T---TVLPFNGLYQPQGLAVDGAGTVYVTDF 85 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------------------------EECCCCSCCSCCCEEECTTCCEEEEET
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc----------------c---ceEeeCCcCCcceeEECCCCCEEEEcC
Confidence 56666654 357999 7 678889988743211 0 011111123567788887766444433
Q ss_pred C-cEEEEeCCCCcccc-cccCCCCcEEEEeeCCCceEEEEEc--CeEEEEEEcCCCceeEeeeecCCCCceEEEecC-Ce
Q 003405 95 E-SIAFHRLPNLETIA-VLTKAKGANVYSWDDRRGFLCFARQ--KRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCG-EN 169 (823)
Q Consensus 95 d-~l~~~~L~~l~~~~-~i~~~kg~~~fa~~~~~~~l~V~~k--kki~l~~~~~~~~f~~~kei~~~~~~~~l~~~~-~~ 169 (823)
+ +|..|+...-.... ..........++++++ +.+.|+.. .+|.+| ..+..........-...|.+|++.. +.
T Consensus 86 ~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~--~~~~~~~~~~~~~~~~~p~~i~~~~~g~ 162 (270)
T 1rwi_B 86 NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQ-GAVYVADRGNNRVVKL--AAGSKTQTVLPFTGLNDPDGVAVDNSGN 162 (270)
T ss_dssp TTEEEEECTTCSCCEECCCCSCSSEEEEEECTT-CCEEEEEGGGTEEEEE--CTTCCSCEECCCCSCCSCCCEEECTTCC
T ss_pred CCEEEEEeCCCceEeeeecCCcCCCcceEECCC-CCEEEEECCCCEEEEE--ECCCceeEeeccccCCCceeEEEeCCCC
Confidence 4 38888865432111 1123356677888764 45777643 455554 4322111111111124678888873 46
Q ss_pred EEEEEc--CceEEEEcCCCCeeeccCCCCCCCCEEEEc-cCCeEEEEe--CCeEEEEcCCCc
Q 003405 170 ICIAIR--KGYMILNATNGALSEVFPSGRIGPPLVVSL-LSGELLLGK--ENIGVFVDQNGK 226 (823)
Q Consensus 170 i~v~~~--~~y~lidl~~~~~~~L~~~~~~~~p~i~~~-~~~EfLL~~--~~~gvfv~~~G~ 226 (823)
++++.. .....+|..++........+ ...|..+.+ +++.+.++. ++....++.+|.
T Consensus 163 l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 163 VYVTDTDNNRVVKLEAESNNQVVLPFTD-ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp EEEEEGGGTEEEEECTTTCCEEECCCSS-CCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred EEEEECCCCEEEEEecCCCceEeecccC-CCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 888876 45777887766544332221 134554444 455666654 345556677665
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=94.16 E-value=5.4 Score=40.27 Aligned_cols=142 Identities=12% Similarity=0.140 Sum_probs=84.2
Q ss_pred cEEEEEE--eCCEEEEEeC--CCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 18 KIDAVAS--YGLKILLGCS--DGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 18 ~I~ci~~--~~~~L~vGT~--~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
.+.+++. .+++|||++. ++.|..|+.... ..+.+.......+..|.+.++.+++++-
T Consensus 78 ~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~-------------------~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 138 (286)
T 1q7f_A 78 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ-------------------FVRKFGATILQHPRGVTVDNKGRIIVVE 138 (286)
T ss_dssp SEEEEEEETTTTEEEEEECGGGCEEEEECTTSC-------------------EEEEECTTTCSCEEEEEECTTSCEEEEE
T ss_pred CceEEEEEcCCCeEEEEcCCCCCEEEEECCCCc-------------------EEEEecCccCCCceEEEEeCCCCEEEEE
Confidence 5667776 3579999985 788999873221 1222221122467888888877655544
Q ss_pred eC-c-EEEEeCCCCcccccc---cCCCCcEEEEeeCCCceEEEEE--cCeEEEEEEcCCCceeEeeeecCC---CCceEE
Q 003405 94 SE-S-IAFHRLPNLETIAVL---TKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHDGGRGFVEVKDFGVP---DTVKSM 163 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~~~~~i---~~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~~~~~f~~~kei~~~---~~~~~l 163 (823)
.. + |.+|+... +....+ ........++++++ +.+.|+. .++|.+|... ++ + ++.+..+ ..|.+|
T Consensus 139 ~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~-g~-~--~~~~~~~g~~~~p~~i 212 (286)
T 1q7f_A 139 CKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDK-QEIFISDNRAHCVKVFNYE-GQ-Y--LRQIGGEGITNYPIGV 212 (286)
T ss_dssp TTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSS-SEEEEEEGGGTEEEEEETT-CC-E--EEEESCTTTSCSEEEE
T ss_pred CCCCEEEEEcCCC-CEEEEeCCCCccCCcEEEEECCC-CCEEEEECCCCEEEEEcCC-CC-E--EEEEccCCccCCCcEE
Confidence 33 3 88888532 212222 22345677888875 4577764 5677777654 32 2 2233322 468899
Q ss_pred EecC-CeEEEEEcC---ceEEEEcC
Q 003405 164 SWCG-ENICIAIRK---GYMILNAT 184 (823)
Q Consensus 164 ~~~~-~~i~v~~~~---~y~lidl~ 184 (823)
++.. +.++++... ...++|.+
T Consensus 213 ~~d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 213 GINSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp EECTTCCEEEEECSSSCEEEEECTT
T ss_pred EECCCCCEEEEeCCCCEEEEEECCC
Confidence 9873 468888752 56777754
No 164
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=94.05 E-value=1.2 Score=50.61 Aligned_cols=199 Identities=9% Similarity=0.020 Sum_probs=106.3
Q ss_pred CcEEEEEEe--------CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccC
Q 003405 17 PKIDAVASY--------GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQ 88 (823)
Q Consensus 17 ~~I~ci~~~--------~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~ 88 (823)
..|.+++.. ++.|+.|+.||+|.+|++........ ....+.. ....+.+ +..+|..+...+. +
T Consensus 208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~---~~~~~~~----p~~~l~~-h~~~v~sv~~s~~-~ 278 (524)
T 2j04_B 208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH---VFKMCEK----PSLTLSL-ADSLITTFDFLSP-T 278 (524)
T ss_dssp CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS---EEECCCS----CSEEECC-TTTCEEEEEESSS-S
T ss_pred CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc---cceeecC----ceEEEEc-CCCCEEEEEecCC-C
Confidence 457777654 25788899999999999875321100 0000000 0112222 3578999888765 4
Q ss_pred ceeeEeC-c-EEEEeCCCCc-ccccc-cCCCCcEEEE--eeCCC-ceEEEE-EcCeEEEEEEcCCCceeEeeeecCC-CC
Q 003405 89 LLLSLSE-S-IAFHRLPNLE-TIAVL-TKAKGANVYS--WDDRR-GFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVP-DT 159 (823)
Q Consensus 89 ~Ll~l~d-~-l~~~~L~~l~-~~~~i-~~~kg~~~fa--~~~~~-~~l~V~-~kkki~l~~~~~~~~f~~~kei~~~-~~ 159 (823)
.|++-+. + |.+|++.+-+ +...+ .....|+.++ ..++. ..++.+ ..+.|.||.+...+....... ..+ ..
T Consensus 279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~-~~~~~~ 357 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS-RFRGSN 357 (524)
T ss_dssp EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEE-ECSCCS
T ss_pred eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccc-ccccCc
Confidence 5555554 5 9999996432 22222 2335677774 34443 345555 567788888763221111111 112 34
Q ss_pred ceEEEecC--CeEEEEEc-CceEEEEcCCCCe-eeccCCCCCCCCEEEEccCCeEEE-Ee-CCeEEEEcCCCc
Q 003405 160 VKSMSWCG--ENICIAIR-KGYMILNATNGAL-SEVFPSGRIGPPLVVSLLSGELLL-GK-ENIGVFVDQNGK 226 (823)
Q Consensus 160 ~~~l~~~~--~~i~v~~~-~~y~lidl~~~~~-~~L~~~~~~~~p~i~~~~~~EfLL-~~-~~~gvfv~~~G~ 226 (823)
+.+++|.. ..++.|.. ....+.|+.++.. ..+.... ..--.+...+++.+|+ +. |+...+.|..++
T Consensus 358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~-~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE-TTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp CCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS-SCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred ccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCC-CceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 77899984 34444444 4578899988754 2232211 1111233346666666 44 445555565443
No 165
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=93.98 E-value=1.9 Score=49.50 Aligned_cols=221 Identities=9% Similarity=0.044 Sum_probs=126.2
Q ss_pred eCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEe----cccCceeeEeC--c-E
Q 003405 25 YGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVL----ASRQLLLSLSE--S-I 97 (823)
Q Consensus 25 ~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~----~~~~~Ll~l~d--~-l 97 (823)
.++++|+++.+|.|..|++...+ .+.+.++.. ...-..|.+- |+...+++.+. + +
T Consensus 207 DGr~lyv~~~dg~V~viD~~~~t----------------~~~v~~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v 268 (567)
T 1qks_A 207 SGRYLFVIGRDGKVNMIDLWMKE----------------PTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQY 268 (567)
T ss_dssp TSCEEEEEETTSEEEEEETTSSS----------------CCEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCC----------------CcEeEEEec--CCCCceeEEccccCCCCCEEEEEEccCCeE
Confidence 36799999999999999974111 122333332 1234677777 47777777665 3 9
Q ss_pred EEEeCCCCcccccccCC------------CCcEEEEeeCCCceEEEEEc--CeEEEEEEcCCCceeEeeeecCCCCceEE
Q 003405 98 AFHRLPNLETIAVLTKA------------KGANVYSWDDRRGFLCFARQ--KRVCIFRHDGGRGFVEVKDFGVPDTVKSM 163 (823)
Q Consensus 98 ~~~~L~~l~~~~~i~~~------------kg~~~fa~~~~~~~l~V~~k--kki~l~~~~~~~~f~~~kei~~~~~~~~l 163 (823)
.+++..+++++..+.-. ..+..+....+...++|..+ .+|.++.+.... ...+.++.....+..+
T Consensus 269 ~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~-~~~v~~i~~~~~~~d~ 347 (567)
T 1qks_A 269 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN-NLKTTEISAERFLHDG 347 (567)
T ss_dssp EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS-EEEEEEEECCSSEEEE
T ss_pred EEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc-cceeeeeeccccccCc
Confidence 99999888876544311 12344444544455555544 466666665322 2234556556677788
Q ss_pred Eec--CCeEEEEEc--CceEEEEcCCCCeeeccCC-CCCCCC---EEEEccC-CeEEEEe---CCeEEEEcCCCcccc--
Q 003405 164 SWC--GENICIAIR--KGYMILNATNGALSEVFPS-GRIGPP---LVVSLLS-GELLLGK---ENIGVFVDQNGKLLQ-- 229 (823)
Q Consensus 164 ~~~--~~~i~v~~~--~~y~lidl~~~~~~~L~~~-~~~~~p---~i~~~~~-~EfLL~~---~~~gvfv~~~G~~~~-- 229 (823)
.|. |..++++.. +...++|+.+++.....+. ++...| ....-++ +.+.+.. ++...+++.+....+
T Consensus 348 ~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~ 427 (567)
T 1qks_A 348 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN 427 (567)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred eECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccc
Confidence 887 567888875 6789999999988777777 543333 1112233 4444432 234445554321000
Q ss_pred ----CCceeecC-CCcEEEEe--CCEEEEEeC--------CeEEEEEccC
Q 003405 230 ----ADRICWSE-APIAVIIQ--KPYAIALLP--------RRVEVRSLRV 264 (823)
Q Consensus 230 ----~~~i~w~~-~P~~v~~~--~PYll~~~~--------~~ieV~~l~~ 264 (823)
..++.-.+ .+..+..+ .+|+.+-.+ ++|.|+++.+
T Consensus 428 ~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 428 AWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp BTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred cCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence 01222221 22334333 468877553 3899999863
No 166
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=93.98 E-value=7.5 Score=41.20 Aligned_cols=246 Identities=8% Similarity=0.099 Sum_probs=125.0
Q ss_pred EEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC-c-E
Q 003405 20 DAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-S-I 97 (823)
Q Consensus 20 ~ci~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d-~-l 97 (823)
.+....++.||+||.+|.|+.++..... ..+.. ... ..+..-.++. .+.+++-+. + |
T Consensus 97 ~~~~~~~~~v~v~~~~g~l~a~d~~tG~--------------~~W~~--~~~----~~~~~~p~~~-~~~v~v~~~~g~l 155 (376)
T 3q7m_A 97 GGVTVSGGHVYIGSEKAQVYALNTSDGT--------------VAWQT--KVA----GEALSRPVVS-DGLVLIHTSNGQL 155 (376)
T ss_dssp EEEEEETTEEEEEETTSEEEEEETTTCC--------------EEEEE--ECS----SCCCSCCEEE-TTEEEEECTTSEE
T ss_pred cCceEeCCEEEEEcCCCEEEEEECCCCC--------------EEEEE--eCC----CceEcCCEEE-CCEEEEEcCCCeE
Confidence 4566778999999999999999854211 11111 111 1111111122 345555443 4 8
Q ss_pred EEEeCCCCcccccccCC------CCcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEeeeecCC----------CCc
Q 003405 98 AFHRLPNLETIAVLTKA------KGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFGVP----------DTV 160 (823)
Q Consensus 98 ~~~~L~~l~~~~~i~~~------kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kei~~~----------~~~ 160 (823)
..++..+-+..-..... .+....++. .+.+.++. ...+..+....++ ..-......| +..
T Consensus 156 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~ 232 (376)
T 3q7m_A 156 QALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQ-MIWQQRISQATGSTEIDRLSDVD 232 (376)
T ss_dssp EEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCC-EEEEEECCC-----------CCC
T ss_pred EEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCc-EEEEEecccCCCCcccccccccC
Confidence 88887543322111110 111112222 23555554 3445555543332 1111111111 011
Q ss_pred eEEEecCCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEEEeC-CeEEEEcC-CCccccCCceeecC
Q 003405 161 KSMSWCGENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKE-NIGVFVDQ-NGKLLQADRICWSE 237 (823)
Q Consensus 161 ~~l~~~~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL~~~-~~gvfv~~-~G~~~~~~~i~w~~ 237 (823)
......++.+++++. .....+|..+|+...-.+.+. +......++.+.++.. +..+.+|. +|+ +.|..
T Consensus 233 ~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~---~~~~~~~~~~l~~~~~~g~l~~~d~~tG~------~~w~~ 303 (376)
T 3q7m_A 233 TTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS---VNDFIVDGNRIYLVDQNDRVMALTIDGGV------TLWTQ 303 (376)
T ss_dssp CCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC---EEEEEEETTEEEEEETTCCEEEEETTTCC------EEEEE
T ss_pred CCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC---CCCceEECCEEEEEcCCCeEEEEECCCCc------EEEee
Confidence 122334788888875 567889999998765554432 1112224555555543 34455664 343 34532
Q ss_pred C------CcEEEEeCCEEEEEeCC-eEEEEEccCCCceeEEEeeCCcccc---cccCCeEEEec-cceEEEee
Q 003405 238 A------PIAVIIQKPYAIALLPR-RVEVRSLRVPYALIQTIVLQNVRHL---IPSSNAVVVAL-ENSIFGLF 299 (823)
Q Consensus 238 ~------P~~v~~~~PYll~~~~~-~ieV~~l~~~~~lvQ~i~l~~~~~l---~~~~~~v~v~s-~~~I~~l~ 299 (823)
. ....+....+|++...+ .+.+.+.. ++.++.+..+.+.... ...++.+|+.+ ++.|+++.
T Consensus 304 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~-tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 304 SDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVE-DGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CTTTTSCCCCCEEETTEEEEECTTSEEEEEETT-TCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred cccCCCcccCCEEECCEEEEEeCCCeEEEEECC-CCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 2 22344567788887764 68888886 5888877776432221 12466777766 45788774
No 167
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=93.94 E-value=10 Score=42.68 Aligned_cols=182 Identities=8% Similarity=-0.035 Sum_probs=96.7
Q ss_pred CcHHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCcccccccCChHHHHHHhhcCCCCChhhHHHhhhhhhhcCcccccc
Q 003405 547 NHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIE 626 (823)
Q Consensus 547 ~~~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~~~~~~~~~~i~yL~~L~~~~~~li~~y~~wll~~~p~~~~~ 626 (823)
.-+..++..|...|++++|++++.+.......+ ... .........+.+ +.+--.++..-.++.+|.....
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~-----~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~ 409 (597)
T 2xpi_A 340 DVYPLHLASLHESGEKNKLYLISNDLVDRHPEK---AVT-----WLAVGIYYLCVN--KISEARRYFSKSSTMDPQFGPA 409 (597)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS---HHH-----HHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc---HHH-----HHHHHHHHHHhc--cHHHHHHHHHHHHHhCCCCHHH
Confidence 346677888888888888888888775322110 000 001111111111 2222222222233333321100
Q ss_pred ccccCCCChHHHHHHHhhcCchhHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccchHHHHHH
Q 003405 627 LFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKL 706 (823)
Q Consensus 627 if~~~~l~~~~Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kL 706 (823)
. ...+.-+......+.+..+++.++... ..+...++.|+..|... +...+...-+
T Consensus 410 ~-------~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~----------------g~~~~A~~~~ 464 (597)
T 2xpi_A 410 W-------IGFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQL----------------GNILLANEYL 464 (597)
T ss_dssp H-------HHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHH----------------TCHHHHHHHH
T ss_pred H-------HHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHc----------------CCHHHHHHHH
Confidence 0 001112222234566778888877542 24677888888888764 1111122333
Q ss_pred HHHhhhcCCCChHHHhccCCCC-chhhHHHHHhhccccHHHHHHHHHHHhC-------CCc--hhHHHHHHHHhcCCCC
Q 003405 707 LSALESISGYNPEVLLKRLPAD-ALYEERAILLGKMNQHELALSLYVHKVF-------LIN--QPVFLLIRRMAMDIKP 775 (823)
Q Consensus 707 l~fL~~s~~Yd~~~~L~~~~~~-~l~~e~~~Ll~klg~h~~AL~ilv~~L~-------D~~--~a~~~~l~~~y~~~~~ 775 (823)
...++. .+.+ ..+...+.+|.+.|++++|++++-.-+. +++ ..+|..+...|...+.
T Consensus 465 ~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 465 QSSYAL------------FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HHHHHH------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred HHHHHh------------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 333322 2222 3456788899999999999999875443 444 5688888888887653
No 168
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=93.83 E-value=2.6 Score=43.59 Aligned_cols=242 Identities=9% Similarity=-0.014 Sum_probs=114.6
Q ss_pred eCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeCcEEEEeCCC
Q 003405 25 YGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSESIAFHRLPN 104 (823)
Q Consensus 25 ~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d~l~~~~L~~ 104 (823)
.++.||+||.+|.|+.|+ .... . ...+. .+...+..+.+.++ +.+.+-+++|..++. +
T Consensus 29 ~~g~l~v~t~~~~l~~~d-~~g~--------------~----~~~~~-~~~~~~~~~~~~~~-g~l~v~t~~l~~~d~-~ 86 (330)
T 3hxj_A 29 KNGTIYLGSSNKNLYAIN-TDGS--------------V----KWFFK-SGEIIECRPSIGKD-GTIYFGSDKVYAINP-D 86 (330)
T ss_dssp TTSCEECSSTTTTTEEEC-TTSC--------------E----EESSC-GGGEEEECCEETTT-TEECCSSCEEEEECC-C
T ss_pred cCCeEEEEcCCCEEEEEC-CCCc--------------E----EEEEe-cCCCcccceEEecC-CcEEEecCcEEEECC-C
Confidence 467999999999999997 3211 0 11111 11223344444444 334433334545543 2
Q ss_pred CcccccccCCC-CcEEEEeeCCCceEEEEE-cCeEEEEEEcCCCceeEeeeecCCC-CceEEEec-CCeEEEEEc-CceE
Q 003405 105 LETIAVLTKAK-GANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFGVPD-TVKSMSWC-GENICIAIR-KGYM 179 (823)
Q Consensus 105 l~~~~~i~~~k-g~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kei~~~~-~~~~l~~~-~~~i~v~~~-~~y~ 179 (823)
-+......... .....++. .+.+.|+. .+.|..|... ++ . ......+. .+.++... ++.+++|+. .+..
T Consensus 87 g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~-~--~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~ 160 (330)
T 3hxj_A 87 GTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GT-E--KWRFKTKKAIYATPIVSEDGTIYVGSNDNYLY 160 (330)
T ss_dssp GGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SC-E--EEEEECSSCCCSCCEECTTSCEEEECTTSEEE
T ss_pred CcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CC-E--EEEEcCCCceeeeeEEcCCCEEEEEcCCCEEE
Confidence 12111111111 11122233 45777776 4445444433 22 1 11222222 33445555 567999987 6788
Q ss_pred EEEcCCCCeeeccCCCCCCCCEEEEccCCeEEEEeCCeEEEEcCCCccccCCceeec-CCCcEEEEeCC-EEEEEeC-Ce
Q 003405 180 ILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWS-EAPIAVIIQKP-YAIALLP-RR 256 (823)
Q Consensus 180 lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL~~~~~gvfv~~~G~~~~~~~i~w~-~~P~~v~~~~P-Yll~~~~-~~ 256 (823)
.+|.. |+...-++.+......+..-.++.+.++. +..+.++.+|.... ...-. ..+..++...- .|.+.+. +.
T Consensus 161 ~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-~~l~~~d~~g~~~~--~~~~~~~~~~~~~~~~~g~l~v~t~~~g 236 (330)
T 3hxj_A 161 AINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-DKVYAINPDGTEKW--NFYAGYWTVTRPAISEDGTIYVTSLDGH 236 (330)
T ss_dssp EECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-SSEEEECTTSCEEE--EECCSSCCCSCCEECTTSCEEEEETTTE
T ss_pred EECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-CEEEEECCCCcEEE--EEccCCcceeceEECCCCeEEEEcCCCe
Confidence 88988 66543333221111112222466777776 55556676664320 11111 12334444432 5555553 56
Q ss_pred EEEEEccCCCceeEEEeeCCcc---cccccCCeEEEeccc-eEEEeec
Q 003405 257 VEVRSLRVPYALIQTIVLQNVR---HLIPSSNAVVVALEN-SIFGLFP 300 (823)
Q Consensus 257 ieV~~l~~~~~lvQ~i~l~~~~---~l~~~~~~v~v~s~~-~I~~l~~ 300 (823)
+..++. ++..+..+...+.. .+...++.+++++.. .|+++.+
T Consensus 237 l~~~~~--~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 237 LYAINP--DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp EEEECT--TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred EEEECC--CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC
Confidence 666653 24555555443321 122235677887765 7888864
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=93.71 E-value=6.3 Score=41.73 Aligned_cols=226 Identities=10% Similarity=0.050 Sum_probs=122.6
Q ss_pred EEEEEE--eCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCc-ee-eE-
Q 003405 19 IDAVAS--YGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQL-LL-SL- 93 (823)
Q Consensus 19 I~ci~~--~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~-Ll-~l- 93 (823)
+++++. .++.||++..+ .+.+|++.... .......... ...+..+.+.|+.+. ++ +.
T Consensus 42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g---------------~~~~~~~~~~--~g~~~~~~~spdg~~l~~~~~~ 103 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSPT---------------EIVHEASHPI--GGHPRANDADTNTRAIFLLAAK 103 (365)
T ss_dssp CSEEEECTTSSEEEEEEBT-EEEEEEEEETT---------------EEEEEEEEEC--CSSGGGGCTTSCCEEEEEEECS
T ss_pred CcEEEECCCCCEEEEEccc-eEEEEEECCCC---------------CEEEeeEeec--CCCCccEEECCCCCEEEEEEec
Confidence 444443 35678888877 88889864210 0000111110 112344556666663 22 22
Q ss_pred -------------eCc-EEEEeCCC-Cccccccc-----CCCCcEEEEeeCCCceEEEEE--cCeEEEEEEc-CCCceeE
Q 003405 94 -------------SES-IAFHRLPN-LETIAVLT-----KAKGANVYSWDDRRGFLCFAR--QKRVCIFRHD-GGRGFVE 150 (823)
Q Consensus 94 -------------~d~-l~~~~L~~-l~~~~~i~-----~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~-~~~~f~~ 150 (823)
.++ +.+|++.. -+....+. ....++.++++++...++++. .+.|.+|... .+ .+..
T Consensus 104 ~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g-~~~~ 182 (365)
T 1jof_A 104 QPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASG-EVEL 182 (365)
T ss_dssp STTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-CEEE
T ss_pred CCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCC-CEEE
Confidence 233 88898752 22211111 235678888888876777764 4678899887 34 3444
Q ss_pred eeeecC---CCCceEEEec--CCeEEEEEc--CceEEEEcC--CCCee------eccCCCCCC---------CCE-EE-E
Q 003405 151 VKDFGV---PDTVKSMSWC--GENICIAIR--KGYMILNAT--NGALS------EVFPSGRIG---------PPL-VV-S 204 (823)
Q Consensus 151 ~kei~~---~~~~~~l~~~--~~~i~v~~~--~~y~lidl~--~~~~~------~L~~~~~~~---------~p~-i~-~ 204 (823)
...+.+ ...|.+++|. |..++++.. +...+++++ +|+.. ..++.+... .|. +. .
T Consensus 183 ~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 262 (365)
T 1jof_A 183 VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL 262 (365)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE
T ss_pred eeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEE
Confidence 444543 3569999998 457888875 456677654 56532 233332111 243 34 4
Q ss_pred ccCCeEEEEe---CC------eEEE-EcCCCccccCC-ceee-cCCCcEEEEe-----CCEEEEEeC--CeEEEEEcc
Q 003405 205 LLSGELLLGK---EN------IGVF-VDQNGKLLQAD-RICW-SEAPIAVIIQ-----KPYAIALLP--RRVEVRSLR 263 (823)
Q Consensus 205 ~~~~EfLL~~---~~------~gvf-v~~~G~~~~~~-~i~w-~~~P~~v~~~-----~PYll~~~~--~~ieV~~l~ 263 (823)
.+++.+|.+. ++ ..+| ++.+|...+.. .+.+ ...|..+++. .-||++... +.|.|+++.
T Consensus 263 spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 263 TFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp CTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 5777776532 22 3344 33456543111 1332 2356666654 458877764 589999885
No 170
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=93.54 E-value=1.3 Score=52.13 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=49.4
Q ss_pred CeeEEEEecccCceeeEeCc-EEEEeCCCCc--ccccccC-CCCcEEEEeeCCCceEEEEEcCeEEEEEEcCC
Q 003405 77 PILSMEVLASRQLLLSLSES-IAFHRLPNLE--TIAVLTK-AKGANVYSWDDRRGFLCFARQKRVCIFRHDGG 145 (823)
Q Consensus 77 ~I~qI~~~~~~~~Ll~l~d~-l~~~~L~~l~--~~~~i~~-~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~ 145 (823)
.|..+..-|+...|++.+++ |.+|++.+-. ....+.. ...+..++++++...|+.+..+.|.++....+
T Consensus 110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g 182 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASG 182 (741)
T ss_dssp ESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTT
T ss_pred CcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCC
Confidence 37888889998888888875 9999987651 1222222 34677888999887888888887777666533
No 171
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=93.13 E-value=10 Score=40.10 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=38.7
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
+...+++.|++++|+..++.....++ .........|..++..+++++|...+.+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 58 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP-----DNTGVLLLLSSIHFQCRRLDRSAHFSTL 58 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46678899999999999876421111 1123455667888999999999998875
No 172
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=93.01 E-value=1.7 Score=45.94 Aligned_cols=58 Identities=7% Similarity=0.001 Sum_probs=43.6
Q ss_pred hhHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 303 LGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 303 ~~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
+-.....+...|++++|+.+++.....++ .....+...|..++..|+|++|...|.++
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDP-----GDAEAWQFLGITQAENENEQAAIVALQRC 125 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 56677788899999999999976421111 12345677899999999999999999873
No 173
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.87 E-value=9.9 Score=44.93 Aligned_cols=115 Identities=11% Similarity=0.104 Sum_probs=64.7
Q ss_pred CCeeEEEEecccCceeeEeCcEEEEeCCCCcccc-cccC-----CCCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCcee
Q 003405 76 KPILSMEVLASRQLLLSLSESIAFHRLPNLETIA-VLTK-----AKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFV 149 (823)
Q Consensus 76 ~~I~qI~~~~~~~~Ll~l~d~l~~~~L~~l~~~~-~i~~-----~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~ 149 (823)
..|..|....+.++.+.-.+||..|+..+-+... ..+. ...+.+++.+.+.+.|-|+..+.|..|... ...+.
T Consensus 146 ~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~-~~~~~ 224 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPS-TGQIK 224 (758)
T ss_dssp SCEEEEEECTTCCEEEEETTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETT-TTEEE
T ss_pred CeEEEEEEcCCCCEEEEeCCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCC-CCeEE
Confidence 4566666665555544333367777654321110 0111 112566666765567888876655544433 22344
Q ss_pred EeeeecCCCCceEEEec-CCeEEEEEcCceEEEEcCCCCeeecc
Q 003405 150 EVKDFGVPDTVKSMSWC-GENICIAIRKGYMILNATNGALSEVF 192 (823)
Q Consensus 150 ~~kei~~~~~~~~l~~~-~~~i~v~~~~~y~lidl~~~~~~~L~ 192 (823)
....+. ...|.+|... ++.|.+|+..+..++|..+++...+.
T Consensus 225 ~~~~l~-~~~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~~~~~ 267 (758)
T 3ott_A 225 QTEAFH-NNSIKSLALDGNGDLLAGTDNGLYVYHNDTTPLQHII 267 (758)
T ss_dssp EEEEEE-EEEEEEEEECTTCCEEEEETTEEEEECCTTSCCEEEC
T ss_pred eccCCC-CCeEEEEEEcCCCCEEEEeCCceeEEecCCCcEEEEE
Confidence 333221 2346777665 46799999989999998877655443
No 174
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=92.74 E-value=9.4 Score=38.73 Aligned_cols=183 Identities=11% Similarity=0.034 Sum_probs=100.1
Q ss_pred EEEEEEe--CC-EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC
Q 003405 19 IDAVASY--GL-KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE 95 (823)
Q Consensus 19 I~ci~~~--~~-~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d 95 (823)
.++++.. ++ .+++|+.+|.|+.|+.... .+.+.. ....+..|.+.+..+++++-.+
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--------------------~~~~~~-~~~~~~~l~~~~dg~l~v~~~~ 88 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--------------------LSPEMH-PSHHQNGHCLNKQGHLIACSHG 88 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--------------------EEEEES-SCSSEEEEEECTTCCEEEEETT
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--------------------eEEEEC-CCCCcceeeECCCCcEEEEecC
Confidence 4444443 34 5788999999999985431 112221 2356788888887776555443
Q ss_pred --cEEEEeCCCCc--ccccc---cCCCCcEEEEeeCCCceEEEEEc-----------------CeEEEEEEcCCCceeEe
Q 003405 96 --SIAFHRLPNLE--TIAVL---TKAKGANVYSWDDRRGFLCFARQ-----------------KRVCIFRHDGGRGFVEV 151 (823)
Q Consensus 96 --~l~~~~L~~l~--~~~~i---~~~kg~~~fa~~~~~~~l~V~~k-----------------kki~l~~~~~~~~f~~~ 151 (823)
+|.+|+..+-+ ..... .....++.++++++ |.+.|+.. ..-.||.+..+..+..+
T Consensus 89 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~-G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 167 (296)
T 3e5z_A 89 LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPD-GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAP 167 (296)
T ss_dssp TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTT-SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEE
T ss_pred CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCC-CCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEe
Confidence 38888874322 11110 11223455777765 45666310 12357777643334332
Q ss_pred eeecCCCCceEEEec--CCeEEEEEc--CceEEEEcC-CCCe---eeccCCCCCCCCE-EEEccCCeEEEEeCCeEEEEc
Q 003405 152 KDFGVPDTVKSMSWC--GENICIAIR--KGYMILNAT-NGAL---SEVFPSGRIGPPL-VVSLLSGELLLGKENIGVFVD 222 (823)
Q Consensus 152 kei~~~~~~~~l~~~--~~~i~v~~~--~~y~lidl~-~~~~---~~L~~~~~~~~p~-i~~~~~~EfLL~~~~~gvfv~ 222 (823)
. .-...|.+++|. |+.+ ++.. ....++|+. +|+. ..++ ......|- ++.-+++.+.++.++....++
T Consensus 168 ~--~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~ 243 (296)
T 3e5z_A 168 I--RDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASAGDGVHVLT 243 (296)
T ss_dssp E--CCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEETTEEEEEC
T ss_pred e--cCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEcCCeEEEEC
Confidence 1 123467889997 4456 6655 457778886 5554 3344 21122232 344456677776655555667
Q ss_pred CCCcc
Q 003405 223 QNGKL 227 (823)
Q Consensus 223 ~~G~~ 227 (823)
.+|+.
T Consensus 244 ~~g~~ 248 (296)
T 3e5z_A 244 PDGDE 248 (296)
T ss_dssp TTSCE
T ss_pred CCCCE
Confidence 77764
No 175
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=92.47 E-value=4.4 Score=41.76 Aligned_cols=176 Identities=13% Similarity=0.078 Sum_probs=84.4
Q ss_pred EEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC--cEEE
Q 003405 22 VASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE--SIAF 99 (823)
Q Consensus 22 i~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d--~l~~ 99 (823)
....++.||+||.+|.|+.|+..+ . ..+ ... .....+..+.+.++.+ +.+-+. +|..
T Consensus 103 ~~~~~~~l~v~t~~~~l~~~d~~g-~--------------~~~----~~~-~~~~~~~~~~~~~~g~-l~vgt~~~~l~~ 161 (330)
T 3hxj_A 103 FTIFEDILYVTSMDGHLYAINTDG-T--------------EKW----RFK-TKKAIYATPIVSEDGT-IYVGSNDNYLYA 161 (330)
T ss_dssp EEEETTEEEEECTTSEEEEECTTS-C--------------EEE----EEE-CSSCCCSCCEECTTSC-EEEECTTSEEEE
T ss_pred ceEECCEEEEEecCCEEEEEcCCC-C--------------EEE----EEc-CCCceeeeeEEcCCCE-EEEEcCCCEEEE
Confidence 334488999999888888887441 1 011 111 1122344444444444 444443 3777
Q ss_pred EeCCCCccccccc-CCCCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEeeeecCC-CCceEEEecCC-eEEEEEc-
Q 003405 100 HRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVP-DTVKSMSWCGE-NICIAIR- 175 (823)
Q Consensus 100 ~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kei~~~-~~~~~l~~~~~-~i~v~~~- 175 (823)
++.. -+...... ....+...+++. .+.+.|+. ..|..|. ..+.. ......+ ..+.++...++ .|++|+.
T Consensus 162 ~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~v~t-~~l~~~d-~~g~~---~~~~~~~~~~~~~~~~~~~g~l~v~t~~ 234 (330)
T 3hxj_A 162 INPD-GTEKWRFKTNDAITSAASIGK-DGTIYFGS-DKVYAIN-PDGTE---KWNFYAGYWTVTRPAISEDGTIYVTSLD 234 (330)
T ss_dssp ECTT-SCEEEEEECSSCCCSCCEECT-TCCEEEES-SSEEEEC-TTSCE---EEEECCSSCCCSCCEECTTSCEEEEETT
T ss_pred ECCC-CCEeEEEecCCCceeeeEEcC-CCEEEEEe-CEEEEEC-CCCcE---EEEEccCCcceeceEECCCCeEEEEcCC
Confidence 7765 22111111 112233344433 35677777 6665555 32221 1122222 34666666644 7888886
Q ss_pred CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEEEeCC-eEEEEcCCCc
Q 003405 176 KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKEN-IGVFVDQNGK 226 (823)
Q Consensus 176 ~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL~~~~-~gvfv~~~G~ 226 (823)
.+...+|. ++....-++.+......++.-.++.+.++..+ ....+|.+|+
T Consensus 235 ~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~ 285 (330)
T 3hxj_A 235 GHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPDGT 285 (330)
T ss_dssp TEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECTTSC
T ss_pred CeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECCCCc
Confidence 56666664 34332222222111111222235667676655 3445665554
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=92.47 E-value=9.7 Score=38.21 Aligned_cols=256 Identities=8% Similarity=0.011 Sum_probs=139.2
Q ss_pred CcEEEEEEe-CCEEEEEeC-CCcEEEEcCCCCCCCCCCCCcccccccccceeeeeec-CCCCCCeeEEEEecccCceeeE
Q 003405 17 PKIDAVASY-GLKILLGCS-DGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTIS-GFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 17 ~~I~ci~~~-~~~L~vGT~-~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~-~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
..+.|++.. ++++|+++. +|.|..|+.. .. + ..+. ......+..|.+.++.++.++-
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~----------------~---~~~~~~~~~~~~~~i~~~~~g~l~v~~ 74 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GK----------------I---TEYPLPTPDAKVMCLTISSDGEVWFTE 74 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CC----------------E---EEEECSSTTCCEEEEEECTTSCEEEEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CC----------------e---EEecCCcccCceeeEEECCCCCEEEeC
Confidence 468888766 468999998 6889998754 11 1 1111 1123567888888876666654
Q ss_pred eC-c-EEEEeCCC-Cccccccc-CCCCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEeeeecCCCCceEEEec-CC
Q 003405 94 SE-S-IAFHRLPN-LETIAVLT-KAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC-GE 168 (823)
Q Consensus 94 ~d-~-l~~~~L~~-l~~~~~i~-~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~-~~ 168 (823)
.. + |..++... +... .++ ....+..++++++ +.+.|+....-.++.++.+..+....--.....|.++++. ++
T Consensus 75 ~~~~~i~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g 152 (299)
T 2z2n_A 75 NAANKIGRITKKGIIKEY-TLPNPDSAPYGITEGPN-GDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDN 152 (299)
T ss_dssp TTTTEEEEECTTSCEEEE-ECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTS
T ss_pred CCCCeEEEECCCCcEEEE-eCCCcCCCceeeEECCC-CCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCC
Confidence 43 3 88887642 1111 111 2345667777754 5677765322223444422223322111112468888887 34
Q ss_pred eEEEEEc--CceEEEEcCCCCeeeccCCCCCCCCEEEEc-cCCeEEEEe--CCeEEEEcCCCccccCCceeec---CCCc
Q 003405 169 NICIAIR--KGYMILNATNGALSEVFPSGRIGPPLVVSL-LSGELLLGK--ENIGVFVDQNGKLLQADRICWS---EAPI 240 (823)
Q Consensus 169 ~i~v~~~--~~y~lidl~~~~~~~L~~~~~~~~p~i~~~-~~~EfLL~~--~~~gvfv~~~G~~~~~~~i~w~---~~P~ 240 (823)
.++++.. .....+|. +++............|..+.+ +++.+.++. ++....++.+|... .+.-+ ..|.
T Consensus 153 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~---~~~~~~~~~~~~ 228 (299)
T 2z2n_A 153 ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEIT---EFKIPTPNARPH 228 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEE---EEECSSTTCCEE
T ss_pred CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEE---EEECCCCCCCce
Confidence 7888775 46778888 776655421111234544433 556777764 34555677766532 12222 3466
Q ss_pred EEEEeC-CEEEEEe--CCeEEEEEccCCCceeEEEeeCC----cccccccCCeEEEec-cceEEEeecc
Q 003405 241 AVIIQK-PYAIALL--PRRVEVRSLRVPYALIQTIVLQN----VRHLIPSSNAVVVAL-ENSIFGLFPV 301 (823)
Q Consensus 241 ~v~~~~-PYll~~~--~~~ieV~~l~~~~~lvQ~i~l~~----~~~l~~~~~~v~v~s-~~~I~~l~~~ 301 (823)
.+++.. -.+.+.. .+.|.+++. + +. +..+.++. +..+...++.+++++ .+.|+++.+.
T Consensus 229 ~i~~~~~g~l~v~~~~~~~i~~~d~-~-g~-~~~~~~~~~~~~~~~i~~~~g~l~v~~~~~~l~~~~~~ 294 (299)
T 2z2n_A 229 AITAGAGIDLWFTEWGANKIGRLTS-N-NI-IEEYPIQIKSAEPHGICFDGETIWFAMECDKIGKLTLI 294 (299)
T ss_dssp EEEECSTTCEEEEETTTTEEEEEET-T-TE-EEEEECSSSSCCEEEEEECSSCEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEeccCCceEEEECC-C-Cc-eEEEeCCCCCCccceEEecCCCEEEEecCCcEEEEEcC
Confidence 777653 2444443 467877776 2 33 34444432 121222456677774 6778888764
No 177
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=92.47 E-value=4.9 Score=40.90 Aligned_cols=151 Identities=9% Similarity=0.040 Sum_probs=96.4
Q ss_pred eEeeeecCCCCc--eEEEecCCeEEEEEcC----ceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE--EeCCeEEE
Q 003405 149 VEVKDFGVPDTV--KSMSWCGENICIAIRK----GYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL--GKENIGVF 220 (823)
Q Consensus 149 ~~~kei~~~~~~--~~l~~~~~~i~v~~~~----~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL--~~~~~gvf 220 (823)
+.+++++.+..+ +++.|.++.+++++.. ....+|+.+|++..-.+.+.....--+...++.+.+ +.++.+..
T Consensus 32 ~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEE
Confidence 345666655555 8999998899999863 578899999987555554432112223334556544 45788888
Q ss_pred EcCC-CccccCCceeecCCCcEEEEeCCEEEEEe-CCeEEEEEccCCCceeEEEeeCC-cc---c---ccccCCeEEEec
Q 003405 221 VDQN-GKLLQADRICWSEAPIAVIIQKPYAIALL-PRRVEVRSLRVPYALIQTIVLQN-VR---H---LIPSSNAVVVAL 291 (823)
Q Consensus 221 v~~~-G~~~~~~~i~w~~~P~~v~~~~PYll~~~-~~~ieV~~l~~~~~lvQ~i~l~~-~~---~---l~~~~~~v~v~s 291 (823)
+|.+ ++. ..++..+..+..+....-.+++-. ++.|.+.+.. +..++.+|.... ++ . +...++.+|+..
T Consensus 112 ~D~~t~~~--~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~-T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~ 188 (262)
T 3nol_A 112 WNIRNLRQ--VRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPE-SLTPVRTITVTAHGEELPELNELEWVDGEIFANV 188 (262)
T ss_dssp EETTTCCE--EEEEECSSCCCCEEECSSCEEECCSSSEEEEECTT-TCSEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred EECccCcE--EEEEECCCCceEEecCCCEEEEECCCCeEEEEcCC-CCeEEEEEEeccCCccccccceeEEECCEEEEEE
Confidence 8864 454 357777777777877776666655 3567777775 578888887742 11 1 233456677654
Q ss_pred --cceEEEeeccC
Q 003405 292 --ENSIFGLFPVP 302 (823)
Q Consensus 292 --~~~I~~l~~~~ 302 (823)
++.|.++.+..
T Consensus 189 w~~~~I~vIDp~t 201 (262)
T 3nol_A 189 WQTNKIVRIDPET 201 (262)
T ss_dssp TTSSEEEEECTTT
T ss_pred ccCCeEEEEECCC
Confidence 56677766653
No 178
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=92.45 E-value=2.5 Score=45.85 Aligned_cols=144 Identities=10% Similarity=0.018 Sum_probs=93.0
Q ss_pred CCCeeEEEEecccCceeeEeC-cEEEEeCCCCc-----------ccccccCCCCcEEEEeeCCCceEEEEEcCeEEEEEE
Q 003405 75 KKPILSMEVLASRQLLLSLSE-SIAFHRLPNLE-----------TIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRH 142 (823)
Q Consensus 75 k~~I~qI~~~~~~~~Ll~l~d-~l~~~~L~~l~-----------~~~~i~~~kg~~~fa~~~~~~~l~V~~kkki~l~~~ 142 (823)
..+++-|.+-+..+++++-+. ++.+|++.++. +...+ ...+++.+++ +...++|+.+..|.+|..
T Consensus 37 ~~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~V~~l~f--d~~~L~v~~~~~l~v~dv 113 (388)
T 1xip_A 37 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPDVIFVCF--HGDQVLVSTRNALYSLDL 113 (388)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTTEEEEEE--ETTEEEEEESSEEEEEES
T ss_pred cccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCCeeEEEE--CCCEEEEEcCCcEEEEEc
Confidence 346888988888888877775 68889875443 21222 2344888888 445788888888888887
Q ss_pred cCCCceeEeeeecCCCCceEEEecCCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEEEeCCeEEEE
Q 003405 143 DGGRGFVEVKDFGVPDTVKSMSWCGENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFV 221 (823)
Q Consensus 143 ~~~~~f~~~kei~~~~~~~~l~~~~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL~~~~~gvfv 221 (823)
..-..-...+.+ ...+.++.+....+++++. ....++|+.++....+-+ ..-++++.+++-.+.+.|+.+..+
T Consensus 114 ~sl~~~~~~~~~--~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~~~~----~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 114 EELSEFRTVTSF--EKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQ----NVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp SSTTCEEEEEEC--SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE----SEEEEEECSSEEEEEETTSCEEEE
T ss_pred hhhhccCcccee--ecceeeEEecCCCEEEEECCCCEEEEEccCCccccccC----CceEEEEcCCceEEEEcCCcEEEE
Confidence 632111112222 3346677777766777776 567888999887655322 234677778874444667777777
Q ss_pred cCCCcc
Q 003405 222 DQNGKL 227 (823)
Q Consensus 222 ~~~G~~ 227 (823)
+.+|..
T Consensus 188 ~~~~~~ 193 (388)
T 1xip_A 188 AWRNGE 193 (388)
T ss_dssp EEETTE
T ss_pred cCCCcc
Confidence 777654
No 179
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=92.40 E-value=11 Score=38.68 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 305 ~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
.....++..|+|++|+..++.....++ .....+...|..++..|+|++|...|.+
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 62 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDP-----DNYIAYYRRATVFLAMGKSKAALPDLTK 62 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc-----ccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 455677889999999999976421111 1234667778999999999999999986
No 180
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=92.28 E-value=3.1 Score=48.55 Aligned_cols=135 Identities=10% Similarity=0.093 Sum_probs=83.7
Q ss_pred CCeeEEEEecccCceeeEeCc-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEEcCeEEEEEEcC-----CCcee
Q 003405 76 KPILSMEVLASRQLLLSLSES-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDG-----GRGFV 149 (823)
Q Consensus 76 ~~I~qI~~~~~~~~Ll~l~d~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~-----~~~f~ 149 (823)
.+|..+..-|+ +.+++.+++ +.+|++.+-+..........+..++++++...|+.+..+.|.++.... +. ..
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~-~~ 159 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSR-AI 159 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCC-CE
T ss_pred cCceeEEECCC-CeEEEEECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCC-cE
Confidence 57999999999 777776775 999998765432222222345667778887778888888888888775 42 22
Q ss_pred EeeeecCC-------------CCceEEEec--CCeEEEEE---------------------------------c-CceEE
Q 003405 150 EVKDFGVP-------------DTVKSMSWC--GENICIAI---------------------------------R-KGYMI 180 (823)
Q Consensus 150 ~~kei~~~-------------~~~~~l~~~--~~~i~v~~---------------------------------~-~~y~l 180 (823)
.+...... ..+.++.|. |..|+++. . ....+
T Consensus 160 ~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~ 239 (706)
T 2z3z_A 160 AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI 239 (706)
T ss_dssp ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence 11111111 115788897 56777775 1 34678
Q ss_pred EEcCCCCeeeccCCCCCCC--CEEEEccCCeEEE
Q 003405 181 LNATNGALSEVFPSGRIGP--PLVVSLLSGELLL 212 (823)
Q Consensus 181 idl~~~~~~~L~~~~~~~~--p~i~~~~~~EfLL 212 (823)
+|+.+++...+........ ..+.+.+++..++
T Consensus 240 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 273 (706)
T 2z3z_A 240 YHLATGKTVYLQTGEPKEKFLTNLSWSPDENILY 273 (706)
T ss_dssp EETTTTEEEECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred EECCCCceEeeccCCCCceeEeeEEEECCCCEEE
Confidence 8998887766653211111 2344557777655
No 181
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=92.23 E-value=8 Score=38.84 Aligned_cols=152 Identities=8% Similarity=0.001 Sum_probs=97.2
Q ss_pred eeEeeeecCC--CCceEEEecCCeEEEEEcC----ceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE--EeCCeEE
Q 003405 148 FVEVKDFGVP--DTVKSMSWCGENICIAIRK----GYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL--GKENIGV 219 (823)
Q Consensus 148 f~~~kei~~~--~~~~~l~~~~~~i~v~~~~----~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL--~~~~~gv 219 (823)
++.+++++.+ .-.+++.|.++.+++++.. ....+|+.+|++..-.+.+.....--+.+.++.+.+ +.++.++
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred eEEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence 4456666554 3467999999999999874 578899999987655554432222323334556544 4678888
Q ss_pred EEcCC-CccccCCceeecCCCcEEEEeCCEEEEEeC-CeEEEEEccCCCceeEEEeeCCc----cc---ccccCCeEEEe
Q 003405 220 FVDQN-GKLLQADRICWSEAPIAVIIQKPYAIALLP-RRVEVRSLRVPYALIQTIVLQNV----RH---LIPSSNAVVVA 290 (823)
Q Consensus 220 fv~~~-G~~~~~~~i~w~~~P~~v~~~~PYll~~~~-~~ieV~~l~~~~~lvQ~i~l~~~----~~---l~~~~~~v~v~ 290 (823)
.+|.+ ++. ..++..+..+-.+....-.+++-.. +.|.+++.. +..++.+|..... .. |...++.+|+.
T Consensus 89 v~D~~tl~~--~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~-t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyan 165 (243)
T 3mbr_X 89 VYDLATLTP--RARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPD-TLQQVGSIKVTAGGRPLDNLNELEWVNGELLAN 165 (243)
T ss_dssp EEETTTTEE--EEEEECSSCCCEEEECSSCEEEECSSSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred EEECCcCcE--EEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCC-CCeEEEEEEEccCCcccccceeeEEeCCEEEEE
Confidence 88864 454 3577777777778777665555543 567777765 5778888876421 11 22345667765
Q ss_pred c--cceEEEeeccC
Q 003405 291 L--ENSIFGLFPVP 302 (823)
Q Consensus 291 s--~~~I~~l~~~~ 302 (823)
. .+.|.++.+..
T Consensus 166 vw~s~~I~vIDp~t 179 (243)
T 3mbr_X 166 VWLTSRIARIDPAS 179 (243)
T ss_dssp ETTTTEEEEECTTT
T ss_pred ECCCCeEEEEECCC
Confidence 3 55677666653
No 182
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=92.22 E-value=12 Score=38.81 Aligned_cols=149 Identities=16% Similarity=0.141 Sum_probs=82.9
Q ss_pred CeeEEEEec-ccCceeeEe-C-c-EEEEeCCCCccccccc-----------CCCCcEEEEeeCCCceEEEEE--cCeEEE
Q 003405 77 PILSMEVLA-SRQLLLSLS-E-S-IAFHRLPNLETIAVLT-----------KAKGANVYSWDDRRGFLCFAR--QKRVCI 139 (823)
Q Consensus 77 ~I~qI~~~~-~~~~Ll~l~-d-~-l~~~~L~~l~~~~~i~-----------~~kg~~~fa~~~~~~~l~V~~--kkki~l 139 (823)
....|.+.+ ..+++++-+ + + |.+|+.. -.....+. .......++++++.+.+.|+- .++|.+
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~ 222 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQC 222 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEE
Confidence 577898988 556666654 3 3 8888743 22222111 122367789998878888884 567777
Q ss_pred EEEcCCCceeEeeeecCCCCceEEEecCCeEEEEEcC---------ceEEEEcCCCCeeeccCCC--CCCCCEEEEc-cC
Q 003405 140 FRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRK---------GYMILNATNGALSEVFPSG--RIGPPLVVSL-LS 207 (823)
Q Consensus 140 ~~~~~~~~f~~~kei~~~~~~~~l~~~~~~i~v~~~~---------~y~lidl~~~~~~~L~~~~--~~~~p~i~~~-~~ 207 (823)
|....++....+..-...+.+.++++....++....+ ...++|..+|+....+..+ ....|.-+.+ ++
T Consensus 223 ~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d 302 (329)
T 3fvz_A 223 FKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED 302 (329)
T ss_dssp EETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT
T ss_pred EECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC
Confidence 7766332112221112345677888876555544433 3457888888776666432 2234654444 45
Q ss_pred CeEEEEe--CCeEEEEcCCCc
Q 003405 208 GELLLGK--ENIGVFVDQNGK 226 (823)
Q Consensus 208 ~EfLL~~--~~~gvfv~~~G~ 226 (823)
+.++++- ++....++.+|.
T Consensus 303 G~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 303 GTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp SEEEEEESSSCCEEEEEEEEC
T ss_pred CCEEEEECCCCEEEEEeCCcc
Confidence 5555532 334444455554
No 183
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=92.07 E-value=1.8 Score=50.69 Aligned_cols=176 Identities=13% Similarity=0.090 Sum_probs=99.7
Q ss_pred cEEEEEEeC-CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeCc
Q 003405 18 KIDAVASYG-LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSES 96 (823)
Q Consensus 18 ~I~ci~~~~-~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d~ 96 (823)
.|++++... ++++++ .+|.+.+|++.... .. .... ....+..+...|+.+.++...|+
T Consensus 83 ~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~------------------~~-~l~~-~~~~~~~~~~SpdG~~la~~~~~ 141 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLF-TQGGLVGFDMLARK------------------VT-YLFD-TNEETASLDFSPVGDRVAYVRNH 141 (706)
T ss_dssp CCEEEEETTTTEEEEE-ETTEEEEEETTTTE------------------EE-EEEC-CTTCCTTCEECTTSSEEEEEETT
T ss_pred CceeEEECCCCeEEEE-ECCEEEEEECCCCc------------------eE-EccC-CcccccCCcCCCCCCEEEEEECC
Confidence 477776554 466666 45999999875321 11 1111 24568888889998888887775
Q ss_pred -EEEEeCCC-----CcccccccCCCC---------------cEEEEeeCCCceEEEEEc---------------------
Q 003405 97 -IAFHRLPN-----LETIAVLTKAKG---------------ANVYSWDDRRGFLCFARQ--------------------- 134 (823)
Q Consensus 97 -l~~~~L~~-----l~~~~~i~~~kg---------------~~~fa~~~~~~~l~V~~k--------------------- 134 (823)
|.+|++.+ -+.........+ +..++++++...|+++..
T Consensus 142 ~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~ 221 (706)
T 2z3z_A 142 NLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESK 221 (706)
T ss_dssp EEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEE
T ss_pred eEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceE
Confidence 99999876 433221111111 367788888777777641
Q ss_pred -----------CeEEEEEEcC-CCceeEeeee-cCCCCceEEEec--CCeEEEEEcC------ceEEEEcCCC-Ceeecc
Q 003405 135 -----------KRVCIFRHDG-GRGFVEVKDF-GVPDTVKSMSWC--GENICIAIRK------GYMILNATNG-ALSEVF 192 (823)
Q Consensus 135 -----------kki~l~~~~~-~~~f~~~kei-~~~~~~~~l~~~--~~~i~v~~~~------~y~lidl~~~-~~~~L~ 192 (823)
....|+.|+. +.....+... .-...+.+++|. |+.|+++... ...++|+.+| ....+.
T Consensus 222 ~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~ 301 (706)
T 2z3z_A 222 PLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLF 301 (706)
T ss_dssp EECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEE
T ss_pred EeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEE
Confidence 2334444442 1111111111 112457889997 4567776542 5778899998 555554
Q ss_pred CCCCC--C--CCEEEEcc--CCeEEEEe
Q 003405 193 PSGRI--G--PPLVVSLL--SGELLLGK 214 (823)
Q Consensus 193 ~~~~~--~--~p~i~~~~--~~EfLL~~ 214 (823)
..+.. . ...+...+ ++.++.+.
T Consensus 302 ~~~~~~~~~~~~~~~~sp~~dg~~l~~~ 329 (706)
T 2z3z_A 302 VETDKHYVEPLHPLTFLPGSNNQFIWQS 329 (706)
T ss_dssp EEECSSCCCCCSCCEECTTCSSEEEEEE
T ss_pred EccCCCeECccCCceeecCCCCEEEEEE
Confidence 32111 0 01234556 77877654
No 184
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=91.95 E-value=12 Score=38.12 Aligned_cols=179 Identities=11% Similarity=-0.001 Sum_probs=108.4
Q ss_pred EEEEeeCCCceEEEEEc----CeEEEEEEcCCCceeEeeeecCCCC--ceEEEecCCeEEEEEc--CceEEEEcCCCCee
Q 003405 118 NVYSWDDRRGFLCFARQ----KRVCIFRHDGGRGFVEVKDFGVPDT--VKSMSWCGENICIAIR--KGYMILNATNGALS 189 (823)
Q Consensus 118 ~~fa~~~~~~~l~V~~k----kki~l~~~~~~~~f~~~kei~~~~~--~~~l~~~~~~i~v~~~--~~y~lidl~~~~~~ 189 (823)
+-++++++ +.+.++.. ..|..+....+ +..+.+.++.. ..++++.|+.+++++- +...++|..+++..
T Consensus 24 ~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg---~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 24 QGLVYAEN-DTLFESTGLYGRSSVRQVALQTG---KVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp EEEEECST-TEEEEEECSTTTCEEEEEETTTC---CEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEE
T ss_pred ccEEEeCC-CeEEEECCCCCCCEEEEEECCCC---CEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEE
Confidence 34555655 57777753 56766666533 23445656553 3467888999999985 56888999998876
Q ss_pred eccCCCCCCCCEEEEccCCeEEEEe-CCeEEEEcCCCccccCCceeecC------CCcEEEEeCCEEEEEe--CCeEEEE
Q 003405 190 EVFPSGRIGPPLVVSLLSGELLLGK-ENIGVFVDQNGKLLQADRICWSE------APIAVIIQKPYAIALL--PRRVEVR 260 (823)
Q Consensus 190 ~L~~~~~~~~p~i~~~~~~EfLL~~-~~~gvfv~~~G~~~~~~~i~w~~------~P~~v~~~~PYll~~~--~~~ieV~ 260 (823)
.-++.+ ...+..+..+.+.+.++- ++...++|...... ...|.-.. .|..+.+...++++-. .+.|-|.
T Consensus 100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v-~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKL-IKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARI 177 (266)
T ss_dssp EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEE
T ss_pred EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcE-EEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEE
Confidence 667665 233444333334455543 35667788755321 12333211 2445566666777665 4689999
Q ss_pred EccCCCceeEEEeeCCcc-----------------cccccCCeEEEecc--ceEEEeeccCh
Q 003405 261 SLRVPYALIQTIVLQNVR-----------------HLIPSSNAVVVALE--NSIFGLFPVPL 303 (823)
Q Consensus 261 ~l~~~~~lvQ~i~l~~~~-----------------~l~~~~~~v~v~s~--~~I~~l~~~~~ 303 (823)
+.. ++..+.+|++++.. .....++.+||+.. ..|+.+...+.
T Consensus 178 D~~-tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 178 SAK-DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ETT-TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ECC-CCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 986 68999999886320 11234567888763 56666665543
No 185
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=91.82 E-value=20 Score=40.31 Aligned_cols=57 Identities=12% Similarity=0.033 Sum_probs=42.6
Q ss_pred hhHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 303 LGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 303 ~~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
+...+..+++.|++++|+.+++.... ..... ......|..++..|+|++|...|.+.
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~----~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 143 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLD----ITGNP--NDAFWLAQVYCCTGDYARAKCLLTKE 143 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----HHCCH--HHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHh----hCCCc--hHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 56778888999999999999976521 11111 23345788899999999999999874
No 186
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=91.65 E-value=6.8 Score=42.06 Aligned_cols=69 Identities=13% Similarity=0.047 Sum_probs=48.2
Q ss_pred CcEEEEEEe----------CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecc
Q 003405 17 PKIDAVASY----------GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS 86 (823)
Q Consensus 17 ~~I~ci~~~----------~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~ 86 (823)
..|.|++.. ++.|+-|..||++.+|++.... ... ..... ..+|..+..-|.
T Consensus 137 ~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~-----------------~~~-~~~~~-~~~v~~v~~~p~ 197 (393)
T 4gq1_A 137 NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG-----------------PIL-AGYPL-SSPGISVQFRPS 197 (393)
T ss_dssp SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE-----------------EEE-EEEEC-SSCEEEEEEETT
T ss_pred CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc-----------------eee-eecCC-CCCcEEEEECCC
Confidence 468888863 5688999999999999975321 111 22222 578999999987
Q ss_pred cC-ceeeEeC-c-EEEEeCCC
Q 003405 87 RQ-LLLSLSE-S-IAFHRLPN 104 (823)
Q Consensus 87 ~~-~Ll~l~d-~-l~~~~L~~ 104 (823)
.. ++++-+. + |++|++.+
T Consensus 198 ~~~~l~~~~~d~~v~~wd~~t 218 (393)
T 4gq1_A 198 NPNQLIVGERNGNIRIFDWTL 218 (393)
T ss_dssp EEEEEEEEETTSEEEEEETTC
T ss_pred CCceEEecCCCCEEEEEECCC
Confidence 64 5666554 5 99999864
No 187
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=91.60 E-value=6.8 Score=45.86 Aligned_cols=120 Identities=11% Similarity=0.134 Sum_probs=83.1
Q ss_pred CCCCeeEEEEecccCceeeEeC--c------EEEEeCCCCccccccc--CC-----------------------CCcEEE
Q 003405 74 SKKPILSMEVLASRQLLLSLSE--S------IAFHRLPNLETIAVLT--KA-----------------------KGANVY 120 (823)
Q Consensus 74 ~k~~I~qI~~~~~~~~Ll~l~d--~------l~~~~L~~l~~~~~i~--~~-----------------------kg~~~f 120 (823)
...+|..+...|+...|++.+. + |.+|++.+-+...... .. .++..+
T Consensus 35 ~~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 35 SGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp TCCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 3567999999999998888774 3 8889986643221111 00 125677
Q ss_pred EeeCCCceEEEEEcCeEEEEEEcCCC--ceeEeeeecCCCCceEEEec--CCeEEEEEcCceEEEEcCCCCeeeccCCC
Q 003405 121 SWDDRRGFLCFARQKRVCIFRHDGGR--GFVEVKDFGVPDTVKSMSWC--GENICIAIRKGYMILNATNGALSEVFPSG 195 (823)
Q Consensus 121 a~~~~~~~l~V~~kkki~l~~~~~~~--~f~~~kei~~~~~~~~l~~~--~~~i~v~~~~~y~lidl~~~~~~~L~~~~ 195 (823)
+++++...|+++....|.++....+. ....+ ...+..+.+++|. |..|+++......++|+.+++...+...+
T Consensus 115 ~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l--~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 115 QWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQL--THGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp EECTTSSEEEEEETTEEEEEESSSCSTTSCCBC--CCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCC
T ss_pred EECCCCCEEEEEeCCcEEEEECCCCCcceEEEc--ccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCC
Confidence 88888878888888888888776441 12211 1224578889997 56799888888999999998877765543
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=91.29 E-value=12 Score=36.96 Aligned_cols=184 Identities=10% Similarity=0.058 Sum_probs=97.3
Q ss_pred cEEEEEEe-CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC-
Q 003405 18 KIDAVASY-GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE- 95 (823)
Q Consensus 18 ~I~ci~~~-~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d- 95 (823)
.+.+++.. +++||+++.+|.|+.|+...... ..+.......+..|.+.+..++.++-.+
T Consensus 68 ~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~-------------------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 128 (270)
T 1rwi_B 68 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ-------------------TVLPFDGLNYPEGLAVDTQGAVYVADRGN 128 (270)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTTCSCC-------------------EECCCCSCSSEEEEEECTTCCEEEEEGGG
T ss_pred CcceeEECCCCCEEEEcCCCEEEEEeCCCceE-------------------eeeecCCcCCCcceEECCCCCEEEEECCC
Confidence 45556554 35799998888899997543211 1111111246788888887664444333
Q ss_pred c-EEEEeCCCCcccc-cccCCCCcEEEEeeCCCceEEEEEc--CeEEEEEEcCCCceeEeeeecCCCCceEEEecCC-eE
Q 003405 96 S-IAFHRLPNLETIA-VLTKAKGANVYSWDDRRGFLCFARQ--KRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGE-NI 170 (823)
Q Consensus 96 ~-l~~~~L~~l~~~~-~i~~~kg~~~fa~~~~~~~l~V~~k--kki~l~~~~~~~~f~~~kei~~~~~~~~l~~~~~-~i 170 (823)
+ |..++..+..... ..........++++++ +.+.|+.. .+|..|...+. ..... ...-...|.+|++..+ .+
T Consensus 129 ~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~-~~~~~-~~~~~~~p~~i~~d~~g~l 205 (270)
T 1rwi_B 129 NRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESN-NQVVL-PFTDITAPWGIAVDEAGTV 205 (270)
T ss_dssp TEEEEECTTCCSCEECCCCSCCSCCCEEECTT-CCEEEEEGGGTEEEEECTTTC-CEEEC-CCSSCCSEEEEEECTTCCE
T ss_pred CEEEEEECCCceeEeeccccCCCceeEEEeCC-CCEEEEECCCCEEEEEecCCC-ceEee-cccCCCCceEEEECCCCCE
Confidence 3 8777654433211 1122234566777764 35777754 45655554422 11111 1111157889999754 78
Q ss_pred EEEEc--CceEEEEcCCCCeeeccCCCCCCCCEEEEc-cCCeEEEEe--CCeEEEEcCC
Q 003405 171 CIAIR--KGYMILNATNGALSEVFPSGRIGPPLVVSL-LSGELLLGK--ENIGVFVDQN 224 (823)
Q Consensus 171 ~v~~~--~~y~lidl~~~~~~~L~~~~~~~~p~i~~~-~~~EfLL~~--~~~gvfv~~~ 224 (823)
+++.. .....+|..+...... +.+....|..+.+ +++.+.++. ++....++..
T Consensus 206 ~v~~~~~~~v~~~~~~~~~~~~~-~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 206 YVTEHNTNQVVKLLAGSTTSTVL-PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp EEEETTTSCEEEECTTCSCCEEC-CCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred EEEECCCCcEEEEcCCCCcceee-ccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 88885 4677888766543332 2211123544443 455655542 3344444443
No 189
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=91.18 E-value=14 Score=37.41 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=30.5
Q ss_pred chhhHHHHHhhccccHHHHHHHHHHHhCC--CchhHHHHHHHHh
Q 003405 729 ALYEERAILLGKMNQHELALSLYVHKVFL--INQPVFLLIRRMA 770 (823)
Q Consensus 729 ~l~~e~~~Ll~klg~h~~AL~ilv~~L~D--~~~a~~~~l~~~y 770 (823)
..+...+.++.++|++++|+..+-.-+.- -+...+..|...|
T Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 271 STYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 45667888999999999999998865432 2455666666655
No 190
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=90.45 E-value=19 Score=37.80 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=38.1
Q ss_pred HHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 308 VQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 308 ~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
..+.+.|++++|..+++.....+ ......+...|..++..|+|++|...|.++
T Consensus 41 ~~~~~~~~~~~a~~~~~~a~~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 93 (388)
T 1w3b_A 41 SIHFQCRRLDRSAHFSTLAIKQN-----PLLAEAYSNLGNVYKERGQLQEAIEHYRHA 93 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34467899999999887542111 122345677788999999999999999873
No 191
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=90.19 E-value=8.6 Score=39.13 Aligned_cols=150 Identities=12% Similarity=0.043 Sum_probs=89.3
Q ss_pred EEEEEEeCCEEEEEeCC-CcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCC-eeEEEEecccCceeeEe--
Q 003405 19 IDAVASYGLKILLGCSD-GSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKP-ILSMEVLASRQLLLSLS-- 94 (823)
Q Consensus 19 I~ci~~~~~~L~vGT~~-G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~-I~qI~~~~~~~~Ll~l~-- 94 (823)
...++..+++||++|.+ |.|..++..... ..++. ..... -.-|.+. .+.|.+++
T Consensus 57 tqGL~~~~~~Ly~stG~~g~v~~iD~~Tgk------------------v~~~~--l~~~~FgeGit~~--g~~Ly~ltw~ 114 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQGTLRQLSLESAQ------------------PVWME--RLGNIFAEGLASD--GERLYQLTWT 114 (268)
T ss_dssp EEEEEEETTEEEEEETTTTEEEECCSSCSS------------------CSEEE--ECTTCCEEEEEEC--SSCEEEEESS
T ss_pred cceEEEECCEEEEEcCCCCEEEEEECCCCc------------------EEeEE--CCCCcceeEEEEe--CCEEEEEEcc
Confidence 34566678999999876 678877755322 12222 21111 1224443 46777777
Q ss_pred Cc-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEeeeecCCC------CceEEEecC
Q 003405 95 ES-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPD------TVKSMSWCG 167 (823)
Q Consensus 95 d~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kei~~~~------~~~~l~~~~ 167 (823)
++ +.+|+..+++.+.+++-....-.+|.+ ...++++.. .=.|+.++.. .++.++.+.+.+ .+..|.|.+
T Consensus 115 ~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~D--g~~L~vSdG-s~~l~~iDp~-T~~v~~~I~V~~~g~~v~~lNeLe~~d 190 (268)
T 3nok_A 115 EGLLFTWSGMPPQRERTTRYSGEGWGLCYW--NGKLVRSDG-GTMLTFHEPD-GFALVGAVQVKLRGQPVELINELECAN 190 (268)
T ss_dssp SCEEEEEETTTTEEEEEEECSSCCCCEEEE--TTEEEEECS-SSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEEET
T ss_pred CCEEEEEECCcCcEEEEEeCCCceeEEecC--CCEEEEECC-CCEEEEEcCC-CCeEEEEEEeCCCCcccccccccEEeC
Confidence 34 899999998877665432211223323 346666642 3335555532 355666555533 334577888
Q ss_pred CeEEEEE--cCceEEEEcCCCCeeeccCC
Q 003405 168 ENICIAI--RKGYMILNATNGALSEVFPS 194 (823)
Q Consensus 168 ~~i~v~~--~~~y~lidl~~~~~~~L~~~ 194 (823)
..|+++. .+...+||..+|++...+..
T Consensus 191 G~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp TEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred CEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 8888887 36788999999987665544
No 192
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=90.01 E-value=38 Score=41.49 Aligned_cols=169 Identities=7% Similarity=-0.044 Sum_probs=96.6
Q ss_pred EEEEEEe---CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCC-CeeEEEEecccCceeeEe
Q 003405 19 IDAVASY---GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKK-PILSMEVLASRQLLLSLS 94 (823)
Q Consensus 19 I~ci~~~---~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~-~I~qI~~~~~~~~Ll~l~ 94 (823)
+.++... ++.|+++. +|.++.++..... ....... .. .+..+... ..+.++..+
T Consensus 298 v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-------------------~~~~~~~-~~~~~~~~~~s-dg~~l~~~s 355 (1045)
T 1k32_A 298 KFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-------------------VLKVPEP-LRIRYVRRGGD-TKVAFIHGT 355 (1045)
T ss_dssp GGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-------------------EEECSCC-SCEEEEEECSS-SEEEEEEEE
T ss_pred cceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-------------------eEEccCC-CcceEEeeeEc-CCCeEEEEE
Confidence 5555443 45777777 7888888754311 0111111 23 56666666 666777777
Q ss_pred Cc--EE-EEeCCCCcccccccCCCCcEEEEeeCCCceEEEEEc-CeEEEEEEcCCCceeEeeeecCCCCceEEEec--CC
Q 003405 95 ES--IA-FHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQ-KRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GE 168 (823)
Q Consensus 95 d~--l~-~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~k-kki~l~~~~~~~~f~~~kei~~~~~~~~l~~~--~~ 168 (823)
+. +. +|++..-+..........+..++++++...++++.. +.|.++....+. ...+-+ .-.+.+.+++|. |.
T Consensus 356 ~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-~~~~~~-~~~~~v~~~~~SpDG~ 433 (1045)
T 1k32_A 356 REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIER-SREAMITDFTISDNSR 433 (1045)
T ss_dssp TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEE-CSSSCCCCEEECTTSC
T ss_pred CCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc-eEEecc-CCCCCccceEECCCCC
Confidence 73 77 778754332211122245678888888777877755 466666665332 222211 234567888997 45
Q ss_pred eEEEEEc-----------CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE
Q 003405 169 NICIAIR-----------KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL 212 (823)
Q Consensus 169 ~i~v~~~-----------~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL 212 (823)
.|+++.. ....++|+.+++...+...... ...+...+++..|+
T Consensus 434 ~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~-~~~~~~spdG~~l~ 487 (1045)
T 1k32_A 434 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH-DYAPAFDADSKNLY 487 (1045)
T ss_dssp EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSB-EEEEEECTTSCEEE
T ss_pred eEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcc-cCCceEcCCCCEEE
Confidence 6766654 2578899998876666543221 11234456666655
No 193
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=89.81 E-value=18 Score=36.55 Aligned_cols=181 Identities=12% Similarity=0.046 Sum_probs=94.0
Q ss_pred CcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe
Q 003405 17 PKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 17 ~~I~ci~~~~--~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
..+.+++... ++|||++..+.|+.|+.. ... ..+. ...........+..|.+.++.++.++-.
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~-------------~~~~-~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 135 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTF-------------EEIA-KKDSEGRRMQGCNDCAFDYEGNLWITAP 135 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETTTEEEEEETT-SCE-------------EECC-SBCTTSCBCBCCCEEEECTTSCEEEEEC
T ss_pred CCCceEEEecCCCcEEEEECCCCEEEEeCC-CCE-------------EEEE-eccCCCccccCCcCEEECCCCCEEEEec
Confidence 3566666543 689999987678888754 110 0000 0000011123578888888776655543
Q ss_pred C-----------------cEEEEeCCCCcccccccCCCCcEEEEee----CCCceEEEEE--cCeEEEEEEcCCCceeEe
Q 003405 95 E-----------------SIAFHRLPNLETIAVLTKAKGANVYSWD----DRRGFLCFAR--QKRVCIFRHDGGRGFVEV 151 (823)
Q Consensus 95 d-----------------~l~~~~L~~l~~~~~i~~~kg~~~fa~~----~~~~~l~V~~--kkki~l~~~~~~~~f~~~ 151 (823)
. +|..++.. -+...........+.++++ ++...+.|+. .++|.+|....+..+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~ 214 (314)
T 1pjx_A 136 AGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK 214 (314)
T ss_dssp BCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE
T ss_pred CcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc
Confidence 2 24445432 1111111122344566677 6554677763 467878876522122221
Q ss_pred ee-ecCC----CCceEEEecC-CeEEEEEc--CceEEEEcCCCCeeeccCCCCCCCCEEEEc-cCCe-EEEEe
Q 003405 152 KD-FGVP----DTVKSMSWCG-ENICIAIR--KGYMILNATNGALSEVFPSGRIGPPLVVSL-LSGE-LLLGK 214 (823)
Q Consensus 152 ke-i~~~----~~~~~l~~~~-~~i~v~~~--~~y~lidl~~~~~~~L~~~~~~~~p~i~~~-~~~E-fLL~~ 214 (823)
+. ..++ ..|.++++.. ..+++++. .....+|..+++....+.... ..|..+.+ +++. +.++.
T Consensus 215 ~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 215 KVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF-EKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp EEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS-SCEEEEEECTTSSEEEEEE
T ss_pred eEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC-CCceeEEECCCCCEEEEEe
Confidence 11 1223 5688898874 46888763 568888888665443333221 23433333 5666 44544
No 194
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=89.75 E-value=14 Score=36.97 Aligned_cols=151 Identities=10% Similarity=0.124 Sum_probs=92.0
Q ss_pred EEEEEEeCCEEEEEeCC---CcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCC-eeEEEEecccCceeeEe
Q 003405 19 IDAVASYGLKILLGCSD---GSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKP-ILSMEVLASRQLLLSLS 94 (823)
Q Consensus 19 I~ci~~~~~~L~vGT~~---G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~-I~qI~~~~~~~~Ll~l~ 94 (823)
...++..+++||++|-. ..|..++..... ..++.. ....+ -.-|.+. .+.|.+++
T Consensus 23 tqGL~~~~~~LyestG~~g~S~v~~vD~~tgk------------------v~~~~~-l~~~~fgeGi~~~--~~~ly~lt 81 (243)
T 3mbr_X 23 TEGLFYLRGHLYESTGETGRSSVRKVDLETGR------------------ILQRAE-VPPPYFGAGIVAW--RDRLIQLT 81 (243)
T ss_dssp EEEEEEETTEEEEEECCTTSCEEEEEETTTCC------------------EEEEEE-CCTTCCEEEEEEE--TTEEEEEE
T ss_pred cccEEEECCEEEEECCCCCCceEEEEECCCCC------------------EEEEEe-CCCCcceeEEEEe--CCEEEEEE
Confidence 45667778999999887 378888865321 222222 21111 1234443 46777777
Q ss_pred --Cc-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEeeeecCC------CCceEEEe
Q 003405 95 --ES-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVP------DTVKSMSW 165 (823)
Q Consensus 95 --d~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kei~~~------~~~~~l~~ 165 (823)
++ +.+|+..+++.+.+++-...--.+| .+.+++.++-. .=.|+.++.. .|+.++.+.+. ..+.-|.|
T Consensus 82 w~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdg-s~~l~~iDp~-t~~~~~~I~V~~~g~~~~~lNeLe~ 157 (243)
T 3mbr_X 82 WRNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDG-TAVIRKLDPD-TLQQVGSIKVTAGGRPLDNLNELEW 157 (243)
T ss_dssp SSSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECS-SSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEE
T ss_pred eeCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECC-CCeEEEEeCC-CCeEEEEEEEccCCcccccceeeEE
Confidence 34 9999999998776654332222233 33456777632 3335555533 46666655542 23456778
Q ss_pred cCCeEEEEE--cCceEEEEcCCCCeeeccCC
Q 003405 166 CGENICIAI--RKGYMILNATNGALSEVFPS 194 (823)
Q Consensus 166 ~~~~i~v~~--~~~y~lidl~~~~~~~L~~~ 194 (823)
.+..|++.. ++...+||..+|++...++.
T Consensus 158 ~~G~lyanvw~s~~I~vIDp~tG~V~~~idl 188 (243)
T 3mbr_X 158 VNGELLANVWLTSRIARIDPASGKVVAWIDL 188 (243)
T ss_dssp ETTEEEEEETTTTEEEEECTTTCBEEEEEEC
T ss_pred eCCEEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 888888887 36789999999987665543
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=89.44 E-value=26 Score=37.74 Aligned_cols=249 Identities=11% Similarity=0.009 Sum_probs=140.5
Q ss_pred EeCCEEEEEeC-----CCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe----
Q 003405 24 SYGLKILLGCS-----DGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS---- 94 (823)
Q Consensus 24 ~~~~~L~vGT~-----~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~---- 94 (823)
..++++||... +|.|.+++... .+...++. .+..| +|.+-|....+.+..
T Consensus 42 pd~~~vyV~~~~~~~~~~~V~ViD~~t------------------~~v~~~I~-vG~~P--~va~spDG~~lyVan~~~~ 100 (386)
T 3sjl_D 42 PDARRVYVNDPAHFAAVTQQFVIDGEA------------------GRVIGMID-GGFLP--NPVVADDGSFIAHASTVFS 100 (386)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTT------------------TEEEEEEE-ECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEEcCcccCCCCEEEEEECCC------------------CeEEEEEE-CCCCC--cEEECCCCCEEEEEccccc
Confidence 45789999987 58888887542 23344443 23456 499999988887764
Q ss_pred -------C-cEEEEeCCCCcccccccCC--------CCcEEEEeeCCCceEEEEE---cCeEEEEEEcCCCceeEeeeec
Q 003405 95 -------E-SIAFHRLPNLETIAVLTKA--------KGANVYSWDDRRGFLCFAR---QKRVCIFRHDGGRGFVEVKDFG 155 (823)
Q Consensus 95 -------d-~l~~~~L~~l~~~~~i~~~--------kg~~~fa~~~~~~~l~V~~---kkki~l~~~~~~~~f~~~kei~ 155 (823)
+ .|.+++..+++.+..+.-- .....++++++..++.|+. ...+.++.... .+.++++.
T Consensus 101 r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t---~~vv~tI~ 177 (386)
T 3sjl_D 101 RIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG---KAFKRMLD 177 (386)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT---TEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC---CcEEEEEE
Confidence 2 3999999988876654321 1345688888877888884 35677776662 34566777
Q ss_pred CCCCceEEEecCC-e-EEEEEcCceEEEEcCC-CCee----eccCCCCCCCCEE---EE-ccCCeE-EEEeCCeEEEEcC
Q 003405 156 VPDTVKSMSWCGE-N-ICIAIRKGYMILNATN-GALS----EVFPSGRIGPPLV---VS-LLSGEL-LLGKENIGVFVDQ 223 (823)
Q Consensus 156 ~~~~~~~l~~~~~-~-i~v~~~~~y~lidl~~-~~~~----~L~~~~~~~~p~i---~~-~~~~Ef-LL~~~~~gvfv~~ 223 (823)
+|+. -.+.-.|. . +.++-......+++.+ +++. ..+..++ .|+. .. -+++.+ +++.++....+|.
T Consensus 178 v~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~--~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~ 254 (386)
T 3sjl_D 178 VPDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED--EFLINHPAYSQKAGRLVWPTYTGKIHQIDL 254 (386)
T ss_dssp CCSE-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT--SCBCSCCEEETTTTEEEEEBTTSEEEEEEC
T ss_pred CCCc-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccc--ccccccceeEcCCCcEEEEeCCCEEEEEEC
Confidence 7652 11111222 2 2333335566677765 4431 2332222 2321 11 245644 4456666666777
Q ss_pred CCccc-cCCcee----------ec-CCCcEEEEe--CCEEEEEeC-----------CeEEEEEccCCCceeEEEeeCCcc
Q 003405 224 NGKLL-QADRIC----------WS-EAPIAVIIQ--KPYAIALLP-----------RRVEVRSLRVPYALIQTIVLQNVR 278 (823)
Q Consensus 224 ~G~~~-~~~~i~----------w~-~~P~~v~~~--~PYll~~~~-----------~~ieV~~l~~~~~lvQ~i~l~~~~ 278 (823)
.|... -..++. |. +....+++. ...+++... +.|-|.++. ++..+.+|++....
T Consensus 255 ~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~-t~kv~~~i~vg~~~ 333 (386)
T 3sjl_D 255 SSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK-TGERLAKFEMGHEI 333 (386)
T ss_dssp TTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT-TCCEEEEEEEEEEE
T ss_pred CCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC-CCeEEEEEECCCCc
Confidence 65421 122332 31 222335543 345555431 468899997 68999999886521
Q ss_pred ---cccccCC-eEEEec--cceEEEeec
Q 003405 279 ---HLIPSSN-AVVVAL--ENSIFGLFP 300 (823)
Q Consensus 279 ---~l~~~~~-~v~v~s--~~~I~~l~~ 300 (823)
.+...++ .+|++. ++.|..+..
T Consensus 334 ~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 334 DSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp CEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred ceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 2233344 355543 456666544
No 196
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=89.40 E-value=12 Score=39.35 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=72.9
Q ss_pred CCCeeEEEEecccCceeeEeC---cEEEEeCC-C--Cccccccc--C-CCCcEEEEeeCCCceEEEEE--cCeEEEEEEc
Q 003405 75 KKPILSMEVLASRQLLLSLSE---SIAFHRLP-N--LETIAVLT--K-AKGANVYSWDDRRGFLCFAR--QKRVCIFRHD 143 (823)
Q Consensus 75 k~~I~qI~~~~~~~~Ll~l~d---~l~~~~L~-~--l~~~~~i~--~-~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~ 143 (823)
...+..+.+.|..+.+++... .|.+|++. + +..+..+. . ..+...++++++...++|+. .+.+.+|.++
T Consensus 144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 357888999998877665432 29999986 3 22222222 1 35677888998877787775 4688999886
Q ss_pred C-CCceeE-eeeec-CCC-------------CceEEE-ec--CCeEEEEEc--C-----ceEEEEcC-CCCeee
Q 003405 144 G-GRGFVE-VKDFG-VPD-------------TVKSMS-WC--GENICIAIR--K-----GYMILNAT-NGALSE 190 (823)
Q Consensus 144 ~-~~~f~~-~kei~-~~~-------------~~~~l~-~~--~~~i~v~~~--~-----~y~lidl~-~~~~~~ 190 (823)
. +..+.. .+.+. +|. .+.+++ |. |..|+++.. + ...++++. +|+...
T Consensus 224 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~ 297 (365)
T 1jof_A 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK 297 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE
T ss_pred CCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEE
Confidence 3 222322 12221 221 378888 76 557888765 2 47788986 676544
No 197
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=88.50 E-value=16 Score=37.05 Aligned_cols=149 Identities=5% Similarity=-0.041 Sum_probs=94.2
Q ss_pred EeeeecCCCCc--eEEEecCCeEEEEEcC--ceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE--EeCCeEEEEcC
Q 003405 150 EVKDFGVPDTV--KSMSWCGENICIAIRK--GYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL--GKENIGVFVDQ 223 (823)
Q Consensus 150 ~~kei~~~~~~--~~l~~~~~~i~v~~~~--~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL--~~~~~gvfv~~ 223 (823)
.+++++.+..+ +++.+.++.+++++.. ....+|+.+|++..-. .+.....--+...++.+.+ +.++.+..+|.
T Consensus 45 Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~ 123 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSG 123 (268)
T ss_dssp EEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEET
T ss_pred EEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEEC
Confidence 34555554444 7999999999999984 4788899998764333 3221112223334455544 45788888886
Q ss_pred C-CccccCCceeecCCCcEEEEeCCEEEEEe-CCeEEEEEccCCCceeEEEeeCC-cc---c---ccccCCeEEEec--c
Q 003405 224 N-GKLLQADRICWSEAPIAVIIQKPYAIALL-PRRVEVRSLRVPYALIQTIVLQN-VR---H---LIPSSNAVVVAL--E 292 (823)
Q Consensus 224 ~-G~~~~~~~i~w~~~P~~v~~~~PYll~~~-~~~ieV~~l~~~~~lvQ~i~l~~-~~---~---l~~~~~~v~v~s--~ 292 (823)
+ ++. ..+|..+..+..++...-.+++-. ++.|.+++.. +..++.+|.... ++ . |...++.+|+.. .
T Consensus 124 ~Tl~~--~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~-T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s 200 (268)
T 3nok_A 124 MPPQR--ERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPD-GFALVGAVQVKLRGQPVELINELECANGVIYANIWHS 200 (268)
T ss_dssp TTTEE--EEEEECSSCCCCEEEETTEEEEECSSSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTC
T ss_pred CcCcE--EEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCC-CCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCC
Confidence 4 554 357777777778888887777766 3678888875 578888887743 11 1 123355677654 5
Q ss_pred ceEEEeeccC
Q 003405 293 NSIFGLFPVP 302 (823)
Q Consensus 293 ~~I~~l~~~~ 302 (823)
+.|.++.+..
T Consensus 201 ~~I~vIDp~T 210 (268)
T 3nok_A 201 SDVLEIDPAT 210 (268)
T ss_dssp SEEEEECTTT
T ss_pred CeEEEEeCCC
Confidence 6677776653
No 198
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=88.44 E-value=28 Score=36.78 Aligned_cols=91 Identities=12% Similarity=0.109 Sum_probs=60.9
Q ss_pred EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEE-----------cCeEEEEEEcCCCceeEeeeecCC-------C
Q 003405 97 IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFAR-----------QKRVCIFRHDGGRGFVEVKDFGVP-------D 158 (823)
Q Consensus 97 l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~-----------kkki~l~~~~~~~~f~~~kei~~~-------~ 158 (823)
+.+|+..+.+....++.-.+. .++++++...++|+. .+.|.+|... ..+..+++.++ .
T Consensus 33 v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~---t~~~~~~i~~~~~~~~~g~ 108 (361)
T 2oiz_A 33 VHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD---KLTFEKEISLPPKRVQGLN 108 (361)
T ss_dssp EEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT---TCCEEEEEEECTTBCCBCC
T ss_pred EEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc---CCcEEEEEEcCccccccCC
Confidence 788887776655555443444 788898888888874 2346666543 23455566543 4
Q ss_pred CceEEEec--CCeEEEEEc---CceEEEEcCCCCeeec
Q 003405 159 TVKSMSWC--GENICIAIR---KGYMILNATNGALSEV 191 (823)
Q Consensus 159 ~~~~l~~~--~~~i~v~~~---~~y~lidl~~~~~~~L 191 (823)
.|..+++. |..+++++. +...++|+.+++...-
T Consensus 109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 67888886 678999873 4588999998875443
No 199
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=88.26 E-value=26 Score=36.22 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=42.5
Q ss_pred hhHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 303 LGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 303 ~~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
+-.....+...|++++|+..++.....++ .....+...|..++..|+|++|...|.++
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 124 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDP-----KHMEAWQYLGTTQAENEQELLAISALRRC 124 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 44567778899999999999876421111 12345666789999999999999999863
No 200
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=88.25 E-value=60 Score=40.40 Aligned_cols=238 Identities=12% Similarity=0.114 Sum_probs=129.3
Q ss_pred EEEEEeC-CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEeccc----CceeeEe
Q 003405 20 DAVASYG-LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASR----QLLLSLS 94 (823)
Q Consensus 20 ~ci~~~~-~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~----~~Ll~l~ 94 (823)
+|++.-+ +.||+|++.|.=..|.+.....+.. ..+.+..++.+. .||..+.+++.. .-++++|
T Consensus 330 ssl~~l~~g~lFvgS~~Gds~l~~~~~~~~~~~----------~~~~~~~~~~N~--~PI~D~~v~d~~~~~~~~i~~~s 397 (1158)
T 3ei3_A 330 ECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQG----------SYVVAMETFTNL--GPIVDMCVVDLERQGQGQLVTCS 397 (1158)
T ss_dssp SEEEECSTTEEEEECSSSCEEEEEECSSCCTTS----------CCEEEEEEECCC--CSEEEEEEECTTSSSCCEEEEEE
T ss_pred cEEEEECCCEEEEEEecCCcEEEEEecCCCCcc----------ceEEeEeeecCc--CCceeEEEEccCCCCCCeEEEEE
Confidence 5666665 5999999999877777765433211 113445566665 799999998743 4678888
Q ss_pred C-c----EEEEeCC-CCcccccccCCCCcE-EEEeeCC-----CceEEEEEcCeEEEEEEcCCCceeEeee--ecCCCCc
Q 003405 95 E-S----IAFHRLP-NLETIAVLTKAKGAN-VYSWDDR-----RGFLCFARQKRVCIFRHDGGRGFVEVKD--FGVPDTV 160 (823)
Q Consensus 95 d-~----l~~~~L~-~l~~~~~i~~~kg~~-~fa~~~~-----~~~l~V~~kkki~l~~~~~~~~f~~~ke--i~~~~~~ 160 (823)
+ + +++..-. ..+....+ ...|++ .+++... ...|++.....=.++++.++ .+..+.+ +....+-
T Consensus 398 G~g~~gsL~~lr~Gi~~~~~~~~-~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl~i~~e-~veev~~~gf~~~~~T 475 (1158)
T 3ei3_A 398 GAFKEGSLRIIRNGIGIHEHASI-DLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGE-EVEETELMGFVDDQQT 475 (1158)
T ss_dssp CCGGGCEEEEEEESBCEEEEEEE-CCCSCCEEEEECCCSSCSSCCEEEEEETTEEEEEEEETT-EEEEECCTTCCSSSCE
T ss_pred CcCCCCeEEEEecCCCEEEEEee-cCCCccEEEEEeecCCCCCCCEEEEECCCCeEEEEEeCC-cccccccccccCCCCc
Confidence 7 2 6665421 11112222 234444 3444321 23677777676678888644 4554432 3323332
Q ss_pred eEEEec-CCeEEEEEcCceEEEEcCCC-CeeeccCCCCCCCCEE-EEccCCeEEEEeCCeEEEEcC-CCccccCCceeec
Q 003405 161 KSMSWC-GENICIAIRKGYMILNATNG-ALSEVFPSGRIGPPLV-VSLLSGELLLGKENIGVFVDQ-NGKLLQADRICWS 236 (823)
Q Consensus 161 ~~l~~~-~~~i~v~~~~~y~lidl~~~-~~~~L~~~~~~~~p~i-~~~~~~EfLL~~~~~gvfv~~-~G~~~~~~~i~w~ 236 (823)
..++-. ++.++=.+.++..+++..++ ...+..+++. .+++ +...+.-++++.++..+++.. +|..........+
T Consensus 476 L~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~--~~I~~As~n~~~vvva~g~~l~~fel~~~~L~~~~~~~l~ 553 (1158)
T 3ei3_A 476 FFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQA--KNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEME 553 (1158)
T ss_dssp EEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTC--CCCCEEEECSSEEEEEETTEEEEEEEETTEEEEEEEEECS
T ss_pred EEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCC--CEEEEEEeCCCEEEEEECCEEEEEEeeCCceeeecccCCC
Confidence 233333 56788889999999998754 3333333321 2333 233444555665544433322 2432211234444
Q ss_pred CCCcEEEEe--------CCEEEEEe--CCeEEEEEccCCCceeEEEee
Q 003405 237 EAPIAVIIQ--------KPYAIALL--PRRVEVRSLRVPYALIQTIVL 274 (823)
Q Consensus 237 ~~P~~v~~~--------~PYll~~~--~~~ieV~~l~~~~~lvQ~i~l 274 (823)
..+..+.+. .+|+++.+ +..+.|+++. +...+....+
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~-~l~~~~~~~L 600 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP-SFELLHKEML 600 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT-TCCEEEEEEC
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC-CCCeEEEEEC
Confidence 444444443 24666555 5689999996 4544443334
No 201
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=88.22 E-value=9.1 Score=37.07 Aligned_cols=55 Identities=24% Similarity=0.212 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 305 ~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
..-..+.+.|++++|+..++.....++ .....+...|..++..|++++|+..|.+
T Consensus 10 ~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 64 (217)
T 2pl2_A 10 RLGVQLYALGRYDAALTLFERALKENP-----QDPEALYWLARTQLKLGLVNPALENGKT 64 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSS-----SCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344567899999999999976421111 1234566789999999999999999986
No 202
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=87.92 E-value=30 Score=36.65 Aligned_cols=136 Identities=10% Similarity=0.006 Sum_probs=70.1
Q ss_pred CCeeEEEEec---ccCceeeEeC-c-EEEEeCCCCcccccccC----CCCcEEEEeeCCCceEEEE-------------E
Q 003405 76 KPILSMEVLA---SRQLLLSLSE-S-IAFHRLPNLETIAVLTK----AKGANVYSWDDRRGFLCFA-------------R 133 (823)
Q Consensus 76 ~~I~qI~~~~---~~~~Ll~l~d-~-l~~~~L~~l~~~~~i~~----~kg~~~fa~~~~~~~l~V~-------------~ 133 (823)
..++-+.+.+ ...+|++-++ + |++|++.+-+.+.++.. ...+..++.+++...++++ .
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence 3455555555 3456666665 4 99999987665554431 2345555666654333332 2
Q ss_pred cCeEEEEEEcCCCceeEeeeecCCCC----ceEEEecCCeEEEEEc-CceEEEEcCCCCeeeccCCCCC-CCCEEEEccC
Q 003405 134 QKRVCIFRHDGGRGFVEVKDFGVPDT----VKSMSWCGENICIAIR-KGYMILNATNGALSEVFPSGRI-GPPLVVSLLS 207 (823)
Q Consensus 134 kkki~l~~~~~~~~f~~~kei~~~~~----~~~l~~~~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~-~~p~i~~~~~ 207 (823)
.+.+.++....++ ...+..+.+|+. ..+..+.+..++-|.. +...+.|+.+|+....+..... ....+...++
T Consensus 259 D~tIklWd~~tgk-~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPD 337 (356)
T 2w18_A 259 VFQLIVINPKTTL-SVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGT 337 (356)
T ss_dssp CEEEEEEETTTTE-EEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSS
T ss_pred CcEEEEEECCCCE-EEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCC
Confidence 2445555444332 212222333321 2222333344444543 6688999999986655542211 1223456678
Q ss_pred CeEEE
Q 003405 208 GELLL 212 (823)
Q Consensus 208 ~EfLL 212 (823)
+.+|+
T Consensus 338 G~~La 342 (356)
T 2w18_A 338 DSHLL 342 (356)
T ss_dssp SSEEE
T ss_pred CCEEE
Confidence 88877
No 203
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=87.85 E-value=25 Score=35.67 Aligned_cols=152 Identities=9% Similarity=0.049 Sum_probs=94.6
Q ss_pred eeEeeeecCCCC--ceEEEecC-CeEEEEEc----CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEEE--eCCeE
Q 003405 148 FVEVKDFGVPDT--VKSMSWCG-ENICIAIR----KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLG--KENIG 218 (823)
Q Consensus 148 f~~~kei~~~~~--~~~l~~~~-~~i~v~~~----~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL~--~~~~g 218 (823)
++.++++..+.. ++++.|.+ +.+++++. +....+|+.+|++..-++.+....+..+.+.++++.++ .++.+
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v 88 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIG 88 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEE
T ss_pred ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEE
Confidence 345667777643 68999987 68888874 57889999999876665554332333333445565554 35677
Q ss_pred EEEcCC-CccccCCceeec-CCCcEEEEeCCEEEEEe-CCeEEEEEccCCCceeEEEeeCCc-c------cccccCCeEE
Q 003405 219 VFVDQN-GKLLQADRICWS-EAPIAVIIQKPYAIALL-PRRVEVRSLRVPYALIQTIVLQNV-R------HLIPSSNAVV 288 (823)
Q Consensus 219 vfv~~~-G~~~~~~~i~w~-~~P~~v~~~~PYll~~~-~~~ieV~~l~~~~~lvQ~i~l~~~-~------~l~~~~~~v~ 288 (823)
..+|.. ++.. .+|... ..+..+....-.+++-. ++.+.+.+.. +...+.+|..... + -+...++.+|
T Consensus 89 ~viD~~t~~v~--~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~-t~~v~~~I~Vg~~~~p~~~~nele~~dg~ly 165 (266)
T 2iwa_A 89 FIYDRRTLSNI--KNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPH-TFKLIKKHNVKYNGHRVIRLNELEYINGEVW 165 (266)
T ss_dssp EEEETTTTEEE--EEEECCSSSCCEEEECSSSEEEECSSSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEEETTEEE
T ss_pred EEEECCCCcEE--EEEECCCCCeEEEEECCCEEEEECCCCeEEEEECC-CCcEEEEEEECCCCcccccceeEEEECCEEE
Confidence 778854 4443 456555 45556666666666544 2567787775 5777888876431 1 1122255677
Q ss_pred Eec--cceEEEeeccC
Q 003405 289 VAL--ENSIFGLFPVP 302 (823)
Q Consensus 289 v~s--~~~I~~l~~~~ 302 (823)
++. ++.|.++.+..
T Consensus 166 vn~~~~~~V~vID~~t 181 (266)
T 2iwa_A 166 ANIWQTDCIARISAKD 181 (266)
T ss_dssp EEETTSSEEEEEETTT
T ss_pred EecCCCCeEEEEECCC
Confidence 654 56777777654
No 204
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=87.73 E-value=21 Score=36.45 Aligned_cols=54 Identities=6% Similarity=0.190 Sum_probs=39.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHH
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFL 363 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~ 363 (823)
.|...+-.|+|..|+..++.....++. .....+...+..++..|+|++|+..+.
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~----~~~e~~~~l~r~yi~~g~~~~al~~~~ 58 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSSPE----RDVERDVFLYRAYLAQRKYGVVLDEIK 58 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCSHH----HHHHHHHHHHHHHHHTTCHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCch----hhHHHHHHHHHHHHHCCCHHHHHHHhc
Confidence 578889999999999999875322221 112234445788999999999998753
No 205
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=87.30 E-value=26 Score=35.24 Aligned_cols=59 Identities=5% Similarity=-0.084 Sum_probs=43.7
Q ss_pred ChhHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 302 PLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 302 ~~~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.+-.+...++..|++++|+.+++.....++ .........|..++..|+|++|...|.++
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 81 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAP-----EREEAWRSLGLTQAENEKDGLAIIALNHA 81 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345677788999999999999976421111 12345556789999999999999999873
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=87.23 E-value=25 Score=34.99 Aligned_cols=258 Identities=12% Similarity=0.022 Sum_probs=135.0
Q ss_pred CcEEEEEEe-CCEEEEEeC-CCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe
Q 003405 17 PKIDAVASY-GLKILLGCS-DGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 17 ~~I~ci~~~-~~~L~vGT~-~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
..+.+++.. +++||+++. +|.|..|+.. .. +... ... .....+..|.+.+..++.++-.
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~----------------~~~~-~~~-~~~~~~~~i~~~~~g~l~v~~~ 80 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GR----------------IKEF-EVP-TPDAKVMCLIVSSLGDIWFTEN 80 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SC----------------EEEE-ECS-STTCCEEEEEECTTSCEEEEET
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc----------------eEEE-ECC-CCCCcceeEEECCCCCEEEEec
Confidence 467787765 468999985 7889998744 11 1100 111 1124677888877766665544
Q ss_pred C-c-EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEeeeec-CCCCceEEEec-CCe
Q 003405 95 E-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFG-VPDTVKSMSWC-GEN 169 (823)
Q Consensus 95 d-~-l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kei~-~~~~~~~l~~~-~~~ 169 (823)
. + |..++...-.....++ ....+..++++.+ +.+.|+....-.|+.++.+..+.... +. ....|.++++. ++.
T Consensus 81 ~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~~~~~-~~~~~~~~~~i~~d~~g~ 158 (300)
T 2qc5_A 81 GANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLN-GDIWFTQLNGDRIGKLTADGTIYEYD-LPNKGSYPAFITLGSDNA 158 (300)
T ss_dssp TTTEEEEECTTSCEEEEECSSTTCCEEEEEECST-TCEEEEETTTTEEEEECTTSCEEEEE-CSSTTCCEEEEEECTTSS
T ss_pred CCCeEEEECCCCCeEEecCCCCCCCCccceECCC-CCEEEEccCCCeEEEECCCCCEEEcc-CCCCCCCceeEEECCCCC
Confidence 3 3 8888764211111111 2245667777754 56777753222244444322233211 11 12468888886 345
Q ss_pred EEEEEc--CceEEEEcCCCCeeeccCCCCCCCCEEEEc-cCCeEEEEeC--CeEEEEcCCCccccCCceee-cCCCcEEE
Q 003405 170 ICIAIR--KGYMILNATNGALSEVFPSGRIGPPLVVSL-LSGELLLGKE--NIGVFVDQNGKLLQADRICW-SEAPIAVI 243 (823)
Q Consensus 170 i~v~~~--~~y~lidl~~~~~~~L~~~~~~~~p~i~~~-~~~EfLL~~~--~~gvfv~~~G~~~~~~~i~w-~~~P~~v~ 243 (823)
++++.. .....+|. +++...+...+....|..+.+ +++.+.++.. +....++.+|.... ..+.- ...|..++
T Consensus 159 l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~~~i~ 236 (300)
T 2qc5_A 159 LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISE-YDIPTPNARPHAIT 236 (300)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEE-EECSSTTCCEEEEE
T ss_pred EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEE-EECCCCCCCceEEE
Confidence 888885 45677787 566554322222234544444 4667777642 34555777665431 11110 13466677
Q ss_pred EeC-CEEEEEe--CCeEEEEEccCCCceeEEEeeCC----ccccc-ccCCeEEEeccceEEEeec
Q 003405 244 IQK-PYAIALL--PRRVEVRSLRVPYALIQTIVLQN----VRHLI-PSSNAVVVALENSIFGLFP 300 (823)
Q Consensus 244 ~~~-PYll~~~--~~~ieV~~l~~~~~lvQ~i~l~~----~~~l~-~~~~~v~v~s~~~I~~l~~ 300 (823)
+.. -.|.+.. .+.|.+++. + +.+ +.+.++. +..+. ..++.+++++.+.|+++.+
T Consensus 237 ~d~~g~l~v~~~~~~~i~~~~~-~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~i~~~~p 298 (300)
T 2qc5_A 237 AGKNSEIWFTEWGANQIGRITN-D-NTI-QEYQLQTENAEPHGITFGKDGSVWFALKCKIGKLNL 298 (300)
T ss_dssp ECSTTCEEEEETTTTEEEEECT-T-SCE-EEEECCSTTCCCCCEEECTTSCEEEECSSEEEEEEE
T ss_pred ECCCCCEEEeccCCCeEEEECC-C-CcE-EEEECCccCCccceeEeCCCCCEEEEccCceEEeCC
Confidence 653 3455554 356777765 2 333 3444442 11222 2245677776447777765
No 207
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=87.10 E-value=31 Score=42.27 Aligned_cols=168 Identities=13% Similarity=0.095 Sum_probs=97.6
Q ss_pred EEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCC----------CCCCeeEEEEe-cccC
Q 003405 20 DAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGF----------SKKPILSMEVL-ASRQ 88 (823)
Q Consensus 20 ~ci~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~----------~k~~I~qI~~~-~~~~ 88 (823)
.++...|+.|+.+ .+|.|+.+++.... +. .+... +...|..+..- |...
T Consensus 250 ~~~SpDG~~la~~-~~~~i~~~d~~~~~------------------l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~ 309 (1045)
T 1k32_A 250 RHLNTDGRRILFS-KGGSIYIFNPDTEK------------------IE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGD 309 (1045)
T ss_dssp EEEEESSSCEEEE-ETTEEEEECTTTCC------------------EE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGG
T ss_pred eeEcCCCCEEEEE-eCCEEEEecCCceE------------------ee-eeccCcccccccccccccccceeeecCCCCC
Confidence 3555566777777 58999999862110 00 11100 12368899999 9988
Q ss_pred ceeeEeCc-EEEEeCCCCcccccccCCC--CcEEEEeeCCCceEEEEEc-CeEE-EEEEcCCCceeEeeeecCCCCceEE
Q 003405 89 LLLSLSES-IAFHRLPNLETIAVLTKAK--GANVYSWDDRRGFLCFARQ-KRVC-IFRHDGGRGFVEVKDFGVPDTVKSM 163 (823)
Q Consensus 89 ~Ll~l~d~-l~~~~L~~l~~~~~i~~~k--g~~~fa~~~~~~~l~V~~k-kki~-l~~~~~~~~f~~~kei~~~~~~~~l 163 (823)
.+++.+++ +.++++.+-+... +.... .+..+++. +...++.+.. ..+. ++....+ ....+. .-...+.++
T Consensus 310 ~la~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~-~~~~l~--~~~~~~~~~ 384 (1045)
T 1k32_A 310 LIAFVSRGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG-KAEKFE--ENLGNVFAM 384 (1045)
T ss_dssp CEEEEETTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC-CEEECC--CCCCSEEEE
T ss_pred EEEEEEcCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC-CceEec--CCccceeee
Confidence 88888875 8888876543221 22222 34556666 5445666544 2343 4444422 222221 223567888
Q ss_pred Eec--CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE
Q 003405 164 SWC--GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL 212 (823)
Q Consensus 164 ~~~--~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL 212 (823)
+|. |..|+++.. ....++|+.+|+...+..........+...+++.+|+
T Consensus 385 ~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la 436 (1045)
T 1k32_A 385 GVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIA 436 (1045)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEE
T ss_pred EECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEE
Confidence 997 567877777 4688999999988777633221112344556777665
No 208
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=87.08 E-value=14 Score=33.45 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=41.3
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
....+...|++++|+..++.....+. ....+....|..++..|+|++|...|.+
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 67 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDADA-----FDVDVALHLGIAYVKTGAVDRGTELLER 67 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCc-----cChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45566788999999999987642211 1235667778999999999999999986
No 209
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=86.98 E-value=20 Score=39.42 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=38.8
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
+...++..|+|++|+..++.....++ .....+...|..++..|+|++|...|.++
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a 85 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELDP-----NEPVFYSNISACYISTGDLEKVIEFTTKA 85 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCC-----CCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566788999999999876421111 12345667789999999999999999873
No 210
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=86.66 E-value=27 Score=34.72 Aligned_cols=228 Identities=11% Similarity=0.021 Sum_probs=126.8
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCccccccccc-ceeeeeecCCCCCCeeEEEEecccCceeeEeC--c-EEEEe
Q 003405 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKES-YELERTISGFSKKPILSMEVLASRQLLLSLSE--S-IAFHR 101 (823)
Q Consensus 26 ~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~-~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d--~-l~~~~ 101 (823)
|.+|++++. +.|..+++++.... ... ..+.. ...+.+..+.+.+..+.|.+..- + |..++
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~-----------~~~~~~~~~----~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~ 64 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMK-----------KTEAKAFLH----IPAKVIIGLAFDCVDKVVYWTDISEPSIGRAS 64 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBC-----------GGGCEEEEE----EEEEEEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CcEEEEEcC-CeEEEEEecCcccc-----------cccceeeec----CCCCcEEEEEEecCCCEEEEEECCCCEEEEEe
Confidence 356788775 57888876653210 000 00111 01234677888876666555432 2 88888
Q ss_pred CCCCcccccc-cCCCCcEEEEeeCCCceEEEEE--cCeEEEEEEcCCCceeEeeeecCC-CCceEEEec--CCeEEEEEc
Q 003405 102 LPNLETIAVL-TKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHDGGRGFVEVKDFGVP-DTVKSMSWC--GENICIAIR 175 (823)
Q Consensus 102 L~~l~~~~~i-~~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~~~~~f~~~kei~~~-~~~~~l~~~--~~~i~v~~~ 175 (823)
+..-.....+ ....+.+.++++...+.+.|+- .++|..+..++. ....+ +... ..|.++++. ++.|+|+..
T Consensus 65 ~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~--~~~~~~~P~~i~vd~~~g~lyv~~~ 141 (267)
T 1npe_A 65 LHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT-QRRVL--FDTGLVNPRGIVTDPVRGNLYWTDW 141 (267)
T ss_dssp SSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEE--ECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred cCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC-CEEEE--EECCCCCccEEEEeeCCCEEEEEEC
Confidence 7643221112 1235677888988777888874 456766666532 11111 1112 478899987 568999885
Q ss_pred C----ceEEEEcCCCCeeeccCCCCCCCCEEEEc-cCCeEEEEe---CCeEEEEcCCCccccCCceeecCCCcEEEEeCC
Q 003405 176 K----GYMILNATNGALSEVFPSGRIGPPLVVSL-LSGELLLGK---ENIGVFVDQNGKLLQADRICWSEAPIAVIIQKP 247 (823)
Q Consensus 176 ~----~y~lidl~~~~~~~L~~~~~~~~p~i~~~-~~~EfLL~~---~~~gvfv~~~G~~~~~~~i~w~~~P~~v~~~~P 247 (823)
. ....++++......+...+ ...|.-+.+ +++..|.+. ++....++.+|... ...+.-...|..++...-
T Consensus 142 ~~~~~~I~~~~~dg~~~~~~~~~~-~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~P~gi~~d~~ 219 (267)
T 1npe_A 142 NRDNPKIETSHMDGTNRRILAQDN-LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-RKVLEGLQYPFAVTSYGK 219 (267)
T ss_dssp CSSSCEEEEEETTSCCCEEEECTT-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-EEEEECCCSEEEEEEETT
T ss_pred CCCCcEEEEEecCCCCcEEEEECC-CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce-EEEecCCCCceEEEEeCC
Confidence 3 3455676644333333222 234665555 334444432 24555677776432 112222345778887778
Q ss_pred EEEEEeC--CeEEEEEccCCCceeEEEeeC
Q 003405 248 YAIALLP--RRVEVRSLRVPYALIQTIVLQ 275 (823)
Q Consensus 248 Yll~~~~--~~ieV~~l~~~~~lvQ~i~l~ 275 (823)
++++... +.|.+++.. ++..+.+|+..
T Consensus 220 ~lyva~~~~~~v~~~d~~-~g~~~~~i~~g 248 (267)
T 1npe_A 220 NLYYTDWKTNSVIAMDLA-ISKEMDTFHPH 248 (267)
T ss_dssp EEEEEETTTTEEEEEETT-TTEEEEEECCS
T ss_pred EEEEEECCCCeEEEEeCC-CCCceEEEccc
Confidence 8887764 577777765 47777777643
No 211
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=86.47 E-value=9.4 Score=35.31 Aligned_cols=160 Identities=10% Similarity=0.070 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCcccccccCChHHHHHHhhcCCCCChhhHHHhhhhhhhcCcccccccc
Q 003405 549 YTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELF 628 (823)
Q Consensus 549 ~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~~~~~~~~~~i~yL~~L~~~~~~li~~y~~wll~~~p~~~~~if 628 (823)
|..|+..|...|++++|++.+.+..+-+-. ..+.. ...+.-|. .++ +.+--.++....+..+|....-..
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~----~~la~~~~-~~~--~~~~a~~~~~~~~~~~~~~~~~~~ 77 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPN---NVETL----LKLGKTYM-DIG--LPNDAIESLKKFVVLDTTSAEAYY 77 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHH----HHHHHHHH-HTT--CHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH----HHHHHHHH-HCC--CHHHHHHHHHHHHhcCchhHHHHH
Confidence 678999999999999999999987643211 00000 01111121 112 223333333333333333211000
Q ss_pred ccCCCChHHHHHHHhhcCchhHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccchHHHHHHHH
Q 003405 629 LSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLS 708 (823)
Q Consensus 629 ~~~~l~~~~Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kLl~ 708 (823)
..-.-+...........+++..+.. ...+...+..++..|... +...+...-+..
T Consensus 78 -------~~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~----------------g~~~~A~~~~~~ 132 (184)
T 3vtx_A 78 -------ILGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSM----------------GEHDKAIEAYEK 132 (184)
T ss_dssp -------HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHH
T ss_pred -------HHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHh----------------CCchhHHHHHHH
Confidence 0001112222345667777777653 235677888888888753 011112222222
Q ss_pred HhhhcCCCChHHHhccCCCC-chhhHHHHHhhccccHHHHHHHHHHHh
Q 003405 709 ALESISGYNPEVLLKRLPAD-ALYEERAILLGKMNQHELALSLYVHKV 755 (823)
Q Consensus 709 fL~~s~~Yd~~~~L~~~~~~-~l~~e~~~Ll~klg~h~~AL~ilv~~L 755 (823)
+++.-|.+ ..+..++.+|.++|++++|++.+-.-|
T Consensus 133 ------------~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 133 ------------TISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp ------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------HHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 23333333 356678899999999999999886544
No 212
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=86.26 E-value=6.2 Score=42.67 Aligned_cols=134 Identities=10% Similarity=0.030 Sum_probs=84.7
Q ss_pred ecccCceeeEeC-------cEEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEEc-----------CeEEEEEEcCC
Q 003405 84 LASRQLLLSLSE-------SIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQ-----------KRVCIFRHDGG 145 (823)
Q Consensus 84 ~~~~~~Ll~l~d-------~l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~k-----------kki~l~~~~~~ 145 (823)
.|..+.+.+... .|.+++..+.+.+..++--++.. ++++++...+.|+.. ..|.+|...
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~-- 117 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV-- 117 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT--
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC--
Confidence 455566665532 38999999888777766555556 899998888888741 234444433
Q ss_pred CceeEeeeecCCC--------CceEEEec--CCeEEEEEc---CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEE-
Q 003405 146 RGFVEVKDFGVPD--------TVKSMSWC--GENICIAIR---KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELL- 211 (823)
Q Consensus 146 ~~f~~~kei~~~~--------~~~~l~~~--~~~i~v~~~---~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfL- 211 (823)
..+.++++.++. .|..+.+. |..+++++. +...+||+.++++..-++.+. ...+.+.+...|+
T Consensus 118 -t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~~~~~P~g~~~~~~ 194 (386)
T 3sjl_D 118 -TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--CYHIFPTAPDTFFM 194 (386)
T ss_dssp -TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--EEEEEEEETTEEEE
T ss_pred -CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--cceeecCCCceeEE
Confidence 345566776654 67788886 668999874 468899999998655544421 0122333344443
Q ss_pred EEeCCeEEEEcC
Q 003405 212 LGKENIGVFVDQ 223 (823)
Q Consensus 212 L~~~~~gvfv~~ 223 (823)
+|.|+..++++.
T Consensus 195 ~~~DG~~~~v~~ 206 (386)
T 3sjl_D 195 HCRDGSLAKVAF 206 (386)
T ss_dssp EETTSCEEEEEC
T ss_pred ECCCCCEEEEEC
Confidence 356666666654
No 213
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.23 E-value=0.78 Score=43.10 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=47.8
Q ss_pred EeeccChhHHHHHHHhcCCHHHHHHHhhhCC---Ccch-HhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 297 GLFPVPLGAQIVQLTASGDFEEALALCKLLP---PEDA-SLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 297 ~l~~~~~~~qI~~Ll~~~~~e~Al~L~~~~~---~~~~-~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
+=.+.-+-+|++.|++.|+|+.|+.+++.+. +.+. .+.....-.+...+|..+|.+++|-.|...|.++
T Consensus 17 ~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 17 RGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp ----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3345567899999999999999999887531 0000 0111222345667899999999999999999873
No 214
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=86.22 E-value=31 Score=34.94 Aligned_cols=145 Identities=9% Similarity=0.011 Sum_probs=88.4
Q ss_pred ceEEEEEcC----eEEEEEEcCCCceeEeeeecCCCCc--eEEEecCCeEEEEE--cCceEEEEcCCCCeeeccCCCCCC
Q 003405 127 GFLCFARQK----RVCIFRHDGGRGFVEVKDFGVPDTV--KSMSWCGENICIAI--RKGYMILNATNGALSEVFPSGRIG 198 (823)
Q Consensus 127 ~~l~V~~kk----ki~l~~~~~~~~f~~~kei~~~~~~--~~l~~~~~~i~v~~--~~~y~lidl~~~~~~~L~~~~~~~ 198 (823)
+.+.++... .|..+....+ +..+++.++..+ -+++..|+.|++++ .+.-.++|..+.+...-++.+..
T Consensus 53 ~~LyestG~~g~S~v~~vD~~Tg---kv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e- 128 (262)
T 3nol_A 53 GYFYESTGLNGRSSIRKVDIESG---KTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE- 128 (262)
T ss_dssp TEEEEEEEETTEEEEEEECTTTC---CEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-
T ss_pred CEEEEECCCCCCceEEEEECCCC---cEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCC-
Confidence 466665432 5655555533 334566677665 45788899999999 46688899999887666665432
Q ss_pred CCEEEEccCCeEEEEe-CCeEEEEcCC-CccccCCceeecCCC----cEEEEeCCEEEEEe--CCeEEEEEccCCCceeE
Q 003405 199 PPLVVSLLSGELLLGK-ENIGVFVDQN-GKLLQADRICWSEAP----IAVIIQKPYAIALL--PRRVEVRSLRVPYALIQ 270 (823)
Q Consensus 199 ~p~i~~~~~~EfLL~~-~~~gvfv~~~-G~~~~~~~i~w~~~P----~~v~~~~PYll~~~--~~~ieV~~l~~~~~lvQ 270 (823)
+..+..+.+.+.++- ++...|+|.. ++..++-++...+.| ..+.+..-.|.+-. .+.|-+.+.. ++.++.
T Consensus 129 -G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~-tG~V~~ 206 (262)
T 3nol_A 129 -GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPE-TGKVTG 206 (262)
T ss_dssp -CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTT-TCBEEE
T ss_pred -ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECC-CCcEEE
Confidence 222222333444432 3567788875 344322223333333 23556677777765 3678888876 689999
Q ss_pred EEeeCCc
Q 003405 271 TIVLQNV 277 (823)
Q Consensus 271 ~i~l~~~ 277 (823)
+|.+++.
T Consensus 207 ~Id~~~L 213 (262)
T 3nol_A 207 IIDLNGI 213 (262)
T ss_dssp EEECTTG
T ss_pred EEECCcC
Confidence 9998653
No 215
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=86.09 E-value=29 Score=34.59 Aligned_cols=186 Identities=16% Similarity=0.205 Sum_probs=101.1
Q ss_pred cEEEEEEeC-CEEEEE-eCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCC-----CCCCeeEEEEecccCce
Q 003405 18 KIDAVASYG-LKILLG-CSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGF-----SKKPILSMEVLASRQLL 90 (823)
Q Consensus 18 ~I~ci~~~~-~~L~vG-T~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~-----~k~~I~qI~~~~~~~~L 90 (823)
.+.+++... +++|++ +.+|.|..|+.... ....+... ....+..|.+.+..+.+
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~-------------------~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l 91 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-------------------FKFQFGECGKRDSQLLYPNRVAVVRNSGDI 91 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTSC-------------------EEEEECCBSSSTTCBSSEEEEEEETTTTEE
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCCCc-------------------EEEEecccCCCcccccCceEEEEEcCCCeE
Confidence 467776653 578777 67889999975421 11111110 11356777775444444
Q ss_pred eeEe---C-cEEEEeCCCCcccccc--cCCCCcEEEEeeCCCceEEEEE--cCeEEEEEEcCCCceeEeeeecC---CCC
Q 003405 91 LSLS---E-SIAFHRLPNLETIAVL--TKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHDGGRGFVEVKDFGV---PDT 159 (823)
Q Consensus 91 l~l~---d-~l~~~~L~~l~~~~~i--~~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~~~~~f~~~kei~~---~~~ 159 (823)
++.. + .|.+|+. +-+....+ ........++++++. .+.|+. .++|.+|... ++ . .+.+.. ...
T Consensus 92 ~v~~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~-~--~~~~~~~~~~~~ 165 (286)
T 1q7f_A 92 IVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GN-V--LHKFGCSKHLEF 165 (286)
T ss_dssp EEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SC-E--EEEEECTTTCSS
T ss_pred EEEcCCCCCEEEEECC-CCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCC-CC-E--EEEeCCCCccCC
Confidence 4444 3 3888873 32222222 223456778888754 566664 3556555433 22 2 222221 246
Q ss_pred ceEEEecC-CeEEEEEc--CceEEEEcCCCCeeeccCCCCCCCCEEEEc-cCCeEEEEe--CC-eEEEEcCCCccc
Q 003405 160 VKSMSWCG-ENICIAIR--KGYMILNATNGALSEVFPSGRIGPPLVVSL-LSGELLLGK--EN-IGVFVDQNGKLL 228 (823)
Q Consensus 160 ~~~l~~~~-~~i~v~~~--~~y~lidl~~~~~~~L~~~~~~~~p~i~~~-~~~EfLL~~--~~-~gvfv~~~G~~~ 228 (823)
|.++++.. +.++++.. ....++|........+-..+....|.-+.+ +++.++++. ++ ....++.+|...
T Consensus 166 p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~ 241 (286)
T 1q7f_A 166 PNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLI 241 (286)
T ss_dssp EEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEE
T ss_pred cEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEE
Confidence 88999984 46888874 567888875443333322222234654444 566777754 33 455667777643
No 216
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=85.90 E-value=32 Score=34.81 Aligned_cols=178 Identities=10% Similarity=0.047 Sum_probs=90.7
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeCcEEEEeCCCC
Q 003405 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSESIAFHRLPNL 105 (823)
Q Consensus 26 ~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d~l~~~~L~~l 105 (823)
++.|+.|..+|.|.+++.... +...++.......+..+.+.|+.+++++-.++|..++. +-
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG------------------~~~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G 65 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTK------------------EIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITR-DG 65 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTT------------------EEEEEEECCTTCCCCEEEECTTSCEEEECBSEEEEECT-TS
T ss_pred CcEEEeeCCCCEEEEEECCCC------------------eEEEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECC-CC
Confidence 467888999999999975221 12223222111357888899988877732224888876 43
Q ss_pred cccccccCC--CCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEeeeecCC-------CCceEEEec--CCeEEEEE
Q 003405 106 ETIAVLTKA--KGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVP-------DTVKSMSWC--GENICIAI 174 (823)
Q Consensus 106 ~~~~~i~~~--kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kei~~~-------~~~~~l~~~--~~~i~v~~ 174 (823)
+.+-..... ..++.....++...+++.....-.++.++.+... ++++.+. ..+..+... |+.++...
T Consensus 66 ~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~--l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~ 143 (276)
T 3no2_A 66 RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEV--LSKTEFETGIERPHAQFRQINKNKKGNYLVPLF 143 (276)
T ss_dssp CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCE--EEEEEECCSCSSGGGSCSCCEECTTSCEEEEET
T ss_pred CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCE--EEEEeccCCCCcccccccCceECCCCCEEEEec
Confidence 322222211 1233444444433333334313345666432222 2222211 123344443 44444333
Q ss_pred c-CceEEEEcCCCCeeeccCCCCCCCCE-EEEccCCeEEEE-eC-CeEEEEcCC-Ccc
Q 003405 175 R-KGYMILNATNGALSEVFPSGRIGPPL-VVSLLSGELLLG-KE-NIGVFVDQN-GKL 227 (823)
Q Consensus 175 ~-~~y~lidl~~~~~~~L~~~~~~~~p~-i~~~~~~EfLL~-~~-~~gvfv~~~-G~~ 227 (823)
. .....+|.+ |+...-+..+ ..|. +...+++.++++ .+ +..+-+|.+ |+.
T Consensus 144 ~~~~v~~~d~~-G~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 144 ATSEVREIAPN-GQLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp TTTEEEEECTT-SCEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred CCCEEEEECCC-CCEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 3 346677877 7665555433 2343 344567777774 33 355667776 764
No 217
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=85.51 E-value=41 Score=35.76 Aligned_cols=250 Identities=10% Similarity=-0.011 Sum_probs=134.4
Q ss_pred EeCCEEEEEeC--CC---cEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe----
Q 003405 24 SYGLKILLGCS--DG---SLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS---- 94 (823)
Q Consensus 24 ~~~~~L~vGT~--~G---~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~---- 94 (823)
..++++|+... .+ .+.+|+... .++...+. .+..| .|.+-|....+.+..
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t------------------~~~~~~i~-~g~~p--~i~~spDg~~lyv~n~~~~ 88 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGS------------------GSILGHVN-GGFLP--NPVAAHSGSEFALASTSFS 88 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCC------------------CeEEEEec-CCCCC--CeEECCCCCEEEEEecccc
Confidence 45578888764 33 667776432 12233333 22345 899999988888774
Q ss_pred -------C-cEEEEeCCCCcccccccCC--------CCcEEEEeeCCCceEEEEEc---CeEEEEEEcCCCceeEeee-e
Q 003405 95 -------E-SIAFHRLPNLETIAVLTKA--------KGANVYSWDDRRGFLCFARQ---KRVCIFRHDGGRGFVEVKD-F 154 (823)
Q Consensus 95 -------d-~l~~~~L~~l~~~~~i~~~--------kg~~~fa~~~~~~~l~V~~k---kki~l~~~~~~~~f~~~ke-i 154 (823)
+ .|.+++..+++.+..++-. .....++++++...+.|+.. ..|.++. ..+ +..++ +
T Consensus 89 ~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~---~~~~~~i 164 (373)
T 2mad_H 89 RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG---SSDDQLL 164 (373)
T ss_pred ccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC---CEEeEEc
Confidence 2 3899999888766544221 22346888888888888753 5688887 533 34566 7
Q ss_pred cCCCCceEEEecCCeEEEEE--cCceEEEEcCCCCeeeccC-----CCCCCCCEEEE---c-cCCe-EEEEeCCeEEEEc
Q 003405 155 GVPDTVKSMSWCGENICIAI--RKGYMILNATNGALSEVFP-----SGRIGPPLVVS---L-LSGE-LLLGKENIGVFVD 222 (823)
Q Consensus 155 ~~~~~~~~l~~~~~~i~v~~--~~~y~lidl~~~~~~~L~~-----~~~~~~p~i~~---~-~~~E-fLL~~~~~gvfv~ 222 (823)
.++..+.... .++..+++. ......+|. +++...... .+ ..|+... . .++. ++++.++....+|
T Consensus 165 ~~~~~~~~~~-~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~v~vid 240 (373)
T 2mad_H 165 SSPTCYHIHP-GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTA--AQNLLTQPAQANKSGRIVWPVYSGKILQAD 240 (373)
T ss_pred CCCceEEEEe-CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccC--CcceeecceeEecCCEEEEEcCCceEEEEe
Confidence 6665432222 233333333 256778888 776542211 22 1233221 1 1233 3445455555566
Q ss_pred CCCcccc-CCc----------eeecCC-CcEEEEe--CCEEEEEeC-----------CeEEEEEccCCCceeEEEeeCCc
Q 003405 223 QNGKLLQ-ADR----------ICWSEA-PIAVIIQ--KPYAIALLP-----------RRVEVRSLRVPYALIQTIVLQNV 277 (823)
Q Consensus 223 ~~G~~~~-~~~----------i~w~~~-P~~v~~~--~PYll~~~~-----------~~ieV~~l~~~~~lvQ~i~l~~~ 277 (823)
..+.... ..+ ..|... +..+++. ...+++... +.|.|.+.. ++..+.+|++...
T Consensus 241 ~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~-t~~vv~~i~~g~~ 319 (373)
T 2mad_H 241 ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL-VGQTSSQISLGHD 319 (373)
T ss_pred ccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECC-CCEEEEEEECCCC
Confidence 5443110 011 122111 1113332 244555432 468888886 6888899987652
Q ss_pred -cc--ccccCC-eEEEec--cceEEEeeccCh
Q 003405 278 -RH--LIPSSN-AVVVAL--ENSIFGLFPVPL 303 (823)
Q Consensus 278 -~~--l~~~~~-~v~v~s--~~~I~~l~~~~~ 303 (823)
.. +...++ .+|++. ++.|..+.....
T Consensus 320 p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 320 VDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred cCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 22 234455 456654 466777665543
No 218
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=85.16 E-value=32 Score=34.19 Aligned_cols=186 Identities=7% Similarity=0.010 Sum_probs=101.2
Q ss_pred CcEEEEEEe-CCEEEEEeC-CCcEEEEcCCCCCCCCCCCCcccccccccceeeeeec-CCCCCCeeEEEEecccCceeeE
Q 003405 17 PKIDAVASY-GLKILLGCS-DGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTIS-GFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 17 ~~I~ci~~~-~~~L~vGT~-~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~-~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
..+.+++.. ++.+|+++. +|.|..|+..+. + +.+. ......+..|.+.++..+.++-
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-----------------~---~~~~~~~~~~~~~~i~~~~~g~l~v~~ 116 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKKGI-----------------I---KEYTLPNPDSAPYGITEGPNGDIWFTE 116 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTSC-----------------E---EEEECSSTTCCEEEEEECTTSCEEEEE
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCCCc-----------------E---EEEeCCCcCCCceeeEECCCCCEEEEe
Confidence 457777764 468999987 688888874311 1 1111 0123467788888766655554
Q ss_pred eC--cEEEEeCCC-CcccccccCCCCcEEEEeeCCCceEEEEEc--CeEEEEEEcCCCceeEeeeecCCCCceEEEecC-
Q 003405 94 SE--SIAFHRLPN-LETIAVLTKAKGANVYSWDDRRGFLCFARQ--KRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCG- 167 (823)
Q Consensus 94 ~d--~l~~~~L~~-l~~~~~i~~~kg~~~fa~~~~~~~l~V~~k--kki~l~~~~~~~~f~~~kei~~~~~~~~l~~~~- 167 (823)
.. +|..++... ............+..++++++ +.+.|+.. ..|..|.. +..+.....-.-...|.++++..
T Consensus 117 ~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~--~g~~~~~~~~~~~~~~~~i~~~~~ 193 (299)
T 2z2n_A 117 MNGNRIGRITDDGKIREYELPNKGSYPSFITLGSD-NALWFTENQNNAIGRITE--SGDITEFKIPTPASGPVGITKGND 193 (299)
T ss_dssp TTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT--TCCEEEEECSSTTCCEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEecCCCCCCCCceEEEcCC-CCEEEEeCCCCEEEEEcC--CCcEEEeeCCCCCCcceeEEECCC
Confidence 43 388887622 111111112345677777765 46766653 44544433 22333221101124678888873
Q ss_pred CeEEEEEc--CceEEEEcCCCCeeeccCCCCCCCCEEEEc-cCCeEEEEe--CCeEEEEcCCCc
Q 003405 168 ENICIAIR--KGYMILNATNGALSEVFPSGRIGPPLVVSL-LSGELLLGK--ENIGVFVDQNGK 226 (823)
Q Consensus 168 ~~i~v~~~--~~y~lidl~~~~~~~L~~~~~~~~p~i~~~-~~~EfLL~~--~~~gvfv~~~G~ 226 (823)
+.++++.. .....+|. +++............|..+.+ +++.+.++. ++....++.+|.
T Consensus 194 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~ 256 (299)
T 2z2n_A 194 DALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNI 256 (299)
T ss_dssp SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTE
T ss_pred CCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCCCc
Confidence 46888884 56778888 776554322222234554444 456776663 344555676664
No 219
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=84.83 E-value=44 Score=35.52 Aligned_cols=124 Identities=9% Similarity=-0.028 Sum_probs=75.7
Q ss_pred EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEE-----------cCeEEEEEEcCCCceeEeeeecCC--------
Q 003405 97 IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFAR-----------QKRVCIFRHDGGRGFVEVKDFGVP-------- 157 (823)
Q Consensus 97 l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~-----------kkki~l~~~~~~~~f~~~kei~~~-------- 157 (823)
|.+++..+.+.+..++.-.+. -++++++...+.|+. ...|.+|... ..+.+.++.++
T Consensus 49 v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~---t~~~~~~i~~~~~~~~~~g 124 (373)
T 2mad_H 49 QWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV---TFLPIADIELPDAPRFDVG 124 (373)
T ss_pred EEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC---CCcEEEEEECCCccccccC
Confidence 588888887766666554555 788888888888874 2346666654 23445566665
Q ss_pred CCceEEEec--CCeEEEEEc---CceEEEEcCCCCeeec-cCCCCCCCCEEEEccCCeEEE-EeCCeEEEEcCCCcc
Q 003405 158 DTVKSMSWC--GENICIAIR---KGYMILNATNGALSEV-FPSGRIGPPLVVSLLSGELLL-GKENIGVFVDQNGKL 227 (823)
Q Consensus 158 ~~~~~l~~~--~~~i~v~~~---~~y~lidl~~~~~~~L-~~~~~~~~p~i~~~~~~EfLL-~~~~~gvfv~~~G~~ 227 (823)
..|..+.|. |..+++++. +...++| .+++...- ++.+.. ..+.+-++.-|.. |.++..+.++..|+.
T Consensus 125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~dg~~~~vd~~g~~ 198 (373)
T 2mad_H 125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC--YHIHPGAPSTFYLLCAQGGLAKTDHAGGA 198 (373)
T ss_pred CCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce--EEEEeCCCceEEEEcCCCCEEEEECCCcE
Confidence 357788886 678999874 4588999 99887655 655321 1122222223332 445555555555543
No 220
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=84.45 E-value=9.4 Score=44.44 Aligned_cols=100 Identities=15% Similarity=0.236 Sum_probs=60.7
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCC--CCCeeEEEEecccCceeeEeC--------
Q 003405 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFS--KKPILSMEVLASRQLLLSLSE-------- 95 (823)
Q Consensus 26 ~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~--k~~I~qI~~~~~~~~Ll~l~d-------- 95 (823)
|+.++ .+.+|.|.+|+...... ...+.... ...|..+.+-|+...|++.++
T Consensus 28 g~~~~-~~~dg~i~~~d~~~g~~------------------~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 28 TEFIY-REQKGTVRLWNVETNTS------------------TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS 88 (723)
T ss_dssp SCBCC-CCSSSCEEEBCGGGCCC------------------EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred CcEEE-EeCCCCEEEEECCCCcE------------------EEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence 34444 47899999998653211 11122111 125899999999888877764
Q ss_pred --c-EEEEeCCCCcccccccCCC----CcEEEEeeCCCceEEEEEcCeEEEEEEcCC
Q 003405 96 --S-IAFHRLPNLETIAVLTKAK----GANVYSWDDRRGFLCFARQKRVCIFRHDGG 145 (823)
Q Consensus 96 --~-l~~~~L~~l~~~~~i~~~k----g~~~fa~~~~~~~l~V~~kkki~l~~~~~~ 145 (823)
+ +.+|++.+-+. ..+.... .+..++++++...|+.+..+.|.++....+
T Consensus 89 ~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g 144 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGK 144 (723)
T ss_dssp CCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSS
T ss_pred ceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCC
Confidence 2 77998865432 1222212 256677888877888888776655554433
No 221
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=84.44 E-value=73 Score=37.76 Aligned_cols=205 Identities=10% Similarity=0.063 Sum_probs=108.3
Q ss_pred eeEeC--cEEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEE--cCeEEEEEEcCCCceeEeee-ec-CCCCceEEE
Q 003405 91 LSLSE--SIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHDGGRGFVEVKD-FG-VPDTVKSMS 164 (823)
Q Consensus 91 l~l~d--~l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~~~~~f~~~ke-i~-~~~~~~~l~ 164 (823)
+++++ .|...++..-+....+...+++..++++...+.|.++- .++|..+...+......... +. --..|.+|+
T Consensus 398 Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLA 477 (791)
T 3m0c_C 398 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 477 (791)
T ss_dssp EEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred cccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceee
Confidence 34444 37777775433222345567788888888777888873 34554444442110001111 11 123566666
Q ss_pred e--cCCeEEEEEc--CceEEEEcCCCCeeeccCCCCCCCCEEEEc-cCCeEEEEeC----CeEEEEcCCCccccCCceee
Q 003405 165 W--CGENICIAIR--KGYMILNATNGALSEVFPSGRIGPPLVVSL-LSGELLLGKE----NIGVFVDQNGKLLQADRICW 235 (823)
Q Consensus 165 ~--~~~~i~v~~~--~~y~lidl~~~~~~~L~~~~~~~~p~i~~~-~~~EfLL~~~----~~gvfv~~~G~~~~~~~i~w 235 (823)
+ .++.|+|+.. ....+++++.+....+...+ ...|.-+.+ +.+..|.+.| .....++.+|... ..+.-
T Consensus 478 vD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~-l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~--~~lv~ 554 (791)
T 3m0c_C 478 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN-GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVT 554 (791)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT-TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--EEEEC
T ss_pred eeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCC-CCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce--EEEEe
Confidence 5 5789999987 45677888766655555432 234665555 3334444433 3445567777532 12221
Q ss_pred c--CCCcEEEEe--CCEEEEEeC--CeEEEEEccCCCceeEEEee-----CCcccccccCCeEEEe--ccceEEEeec
Q 003405 236 S--EAPIAVIIQ--KPYAIALLP--RRVEVRSLRVPYALIQTIVL-----QNVRHLIPSSNAVVVA--LENSIFGLFP 300 (823)
Q Consensus 236 ~--~~P~~v~~~--~PYll~~~~--~~ieV~~l~~~~~lvQ~i~l-----~~~~~l~~~~~~v~v~--s~~~I~~l~~ 300 (823)
. ..|..+++. ...|+.... ..|++.++. +...+++.- +.+.-|...++.+|++ ..+.|+++..
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d--G~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk 630 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR 630 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC--CCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeC
Confidence 1 247778877 456666654 467777763 444444321 2222233345667765 3466777654
No 222
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=82.78 E-value=36 Score=32.88 Aligned_cols=54 Identities=15% Similarity=0.044 Sum_probs=39.1
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
...+...|++++|+..++.....+ .....++...|..++..|+|++|...|.++
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 97 (252)
T 2ho1_A 44 GLGYLQRGNTEQAKVPLRKALEID-----PSSADAHAALAVVFQTEMEPKLADEEYRKA 97 (252)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344567899999999987642111 112356677889999999999999999873
No 223
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=82.54 E-value=58 Score=35.20 Aligned_cols=55 Identities=7% Similarity=0.088 Sum_probs=40.7
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 304 GAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 304 ~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
..+-..+++.|+|++|+..++.....+ .-...+...|..++..|+|++|...|.+
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~la~~~~~~g~~~~A~~~~~~ 64 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELK------EDPVFYSNLSACYVSVGDLKKVVEMSTK 64 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC------ccHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 344566788999999999997642111 1134566678999999999999999986
No 224
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=82.39 E-value=25 Score=34.62 Aligned_cols=60 Identities=10% Similarity=0.141 Sum_probs=44.7
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 304 GAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 304 ~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
-.....+++.|+|++|+..++......+. .......+...|..++..|+|++|...|.+.
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~ 78 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTYGRT--HEWAADAQFYLARAYYQNKEYLLAASEYERF 78 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGGCSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CcchHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 34567788999999999999875322110 1123466777899999999999999999874
No 225
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=81.76 E-value=47 Score=37.32 Aligned_cols=184 Identities=18% Similarity=0.130 Sum_probs=97.0
Q ss_pred CcEEEEE--EeCCEEEEEeC-CCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 17 PKIDAVA--SYGLKILLGCS-DGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 17 ~~I~ci~--~~~~~L~vGT~-~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
..|.++. ..|++|+.+.. +|.+.+|.+.... .++....+...|..+...|+ .++++.
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~-------------------~~~lt~~~~~~~~~~~~spd-~~l~~~ 81 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE-------------------TVKLNREPINSVLDPHYGVG-RVILVR 81 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE-------------------EEECCSSCCSEECEECTTCS-EEEEEE
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCC-------------------cEeeecccccccccccCCCC-eEEEEe
Confidence 3465554 45778877666 9999999863211 11222221235666655565 444444
Q ss_pred eC--c---EEEEeCCC--CcccccccCCCCcEEEEeeCCCceE-EE-EEcCeEEEEEEcCCCceeEeeeecCCCCceEEE
Q 003405 94 SE--S---IAFHRLPN--LETIAVLTKAKGANVYSWDDRRGFL-CF-ARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMS 164 (823)
Q Consensus 94 ~d--~---l~~~~L~~--l~~~~~i~~~kg~~~fa~~~~~~~l-~V-~~kkki~l~~~~~~~~f~~~kei~~~~~~~~l~ 164 (823)
.. + ..+|.++. -.....+....+...+++.++...+ ++ +....+.+|....+ ..+.+.. .+. .+++
T Consensus 82 ~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g-~~~~l~~--~~~--~~~~ 156 (582)
T 3o4h_A 82 DVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGG-GLRELAR--LPG--FGFV 156 (582)
T ss_dssp ECSTTSCCEEEEEEETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETT-EEEEEEE--ESS--CEEE
T ss_pred ccCCCCcceEEEEEeccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCC-cEEEeec--CCC--ceEE
Confidence 32 1 44544322 1111133444556666666655433 33 35566778877644 2322222 122 5666
Q ss_pred ec--CCeEEEEEc-----CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEEEeC--C--eEEEEcCCCc
Q 003405 165 WC--GENICIAIR-----KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKE--N--IGVFVDQNGK 226 (823)
Q Consensus 165 ~~--~~~i~v~~~-----~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL~~~--~--~gvfv~~~G~ 226 (823)
|. |..|+++.. ....++|+.+|+...+..... ..-.+...+++..|...+ + ....+|.+|.
T Consensus 157 ~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 157 SDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDG 228 (582)
T ss_dssp EEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred ECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence 65 777776554 346778999988877644321 112234557888777432 3 3445676553
No 226
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=81.32 E-value=9.4 Score=44.54 Aligned_cols=101 Identities=15% Similarity=0.178 Sum_probs=65.1
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCC--CCCCeeEEEEecccCceeeEeC---------
Q 003405 27 LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGF--SKKPILSMEVLASRQLLLSLSE--------- 95 (823)
Q Consensus 27 ~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~--~k~~I~qI~~~~~~~~Ll~l~d--------- 95 (823)
+.++.++.+|.|.+|++..... ...+... ....|..+..-|+.+.|+..++
T Consensus 27 g~~~~~~~d~~i~~~~~~~g~~------------------~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~ 88 (719)
T 1z68_A 27 QEYLHQSADNNIVLYNIETGQS------------------YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSY 88 (719)
T ss_dssp SEEEEECTTSCEEEEESSSCCE------------------EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred CeEEEEcCCCCEEEEEcCCCcE------------------EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeec
Confidence 3666677899999998764221 1111110 0124888999999888877764
Q ss_pred -c-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEEcCeEEEEEEcCC
Q 003405 96 -S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGG 145 (823)
Q Consensus 96 -~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~ 145 (823)
+ |.+|++.+-+.+....-..++..++++++...|+.+..+.|.++....+
T Consensus 89 ~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g 140 (719)
T 1z68_A 89 TATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGD 140 (719)
T ss_dssp EEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTS
T ss_pred ceEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCC
Confidence 3 8999987655421111124677788899887888888887776665433
No 227
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=81.08 E-value=1.9 Score=35.66 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHH-HHHHHHHHHHccCCHHHHHHHHHh
Q 003405 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGS-IHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 305 ~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~-i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
.+...++..|+|++|+..++.....+. .-.. ++...|..++..|+|++|...|.+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 60 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEP-----VGKDEAYYLMGNAYRKLGDWQKALNNYQS 60 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCS-----STHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456778899999999999976421111 1123 677789999999999999999987
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=80.55 E-value=59 Score=33.95 Aligned_cols=249 Identities=10% Similarity=0.006 Sum_probs=122.6
Q ss_pred EEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecC------CCCCCeeEEEEecccCceeeEe
Q 003405 21 AVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISG------FSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 21 ci~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~------~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
.....++.||+++.+|.|+.|+..... ..+.. .... .....+.....+. .+.+++-+
T Consensus 48 ~p~v~~~~v~~~~~~g~v~a~d~~tG~--------------~~W~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~ 110 (376)
T 3q7m_A 48 HPALADNVVYAADRAGLVKALNADDGK--------------EIWSV--SLAEKDGWFSKEPALLSGGVTVS-GGHVYIGS 110 (376)
T ss_dssp CCEEETTEEEEECTTSEEEEEETTTCC--------------EEEEE--ECCC---CCSCCCCCEEEEEEEE-TTEEEEEE
T ss_pred ccEEECCEEEEEcCCCeEEEEEccCCc--------------eeeee--cCccccccccccCcccccCceEe-CCEEEEEc
Confidence 344578999999999999999864211 11111 1000 0012333333333 35555555
Q ss_pred C-c-EEEEeCCCCcccccccCCCCc-EEEEeeCCCceEEEEEc-CeEEEEEEcCCCceeEeeeecCCCCc------eEEE
Q 003405 95 E-S-IAFHRLPNLETIAVLTKAKGA-NVYSWDDRRGFLCFARQ-KRVCIFRHDGGRGFVEVKDFGVPDTV------KSMS 164 (823)
Q Consensus 95 d-~-l~~~~L~~l~~~~~i~~~kg~-~~fa~~~~~~~l~V~~k-kki~l~~~~~~~~f~~~kei~~~~~~------~~l~ 164 (823)
. + |..++..+-+..-+......+ ...++. .+.++|+.. ..|..+....++. ......+.++ .+..
T Consensus 111 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~---~W~~~~~~~~~~~~~~~~~~ 185 (376)
T 3q7m_A 111 EKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAV---KWTVNLDMPSLSLRGESAPT 185 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCE---EEEEECCC-----CCCCCCE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcE---EEEEeCCCCceeecCCCCcE
Confidence 4 4 888887644322111111111 111122 245666643 3454444433321 1111222211 2233
Q ss_pred ecCCeEEEEEcC-ceEEEEcCCCCeeeccCCCC-------------CCCCEEEEccCCeEEEEe-CCeEEEEcC-CCccc
Q 003405 165 WCGENICIAIRK-GYMILNATNGALSEVFPSGR-------------IGPPLVVSLLSGELLLGK-ENIGVFVDQ-NGKLL 228 (823)
Q Consensus 165 ~~~~~i~v~~~~-~y~lidl~~~~~~~L~~~~~-------------~~~p~i~~~~~~EfLL~~-~~~gvfv~~-~G~~~ 228 (823)
..++.+++++.. ....+|..+|+...-.+.+. ...|.+ .++.+.++. ++....+|. +|+
T Consensus 186 ~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~~~g~l~~~d~~tG~-- 260 (376)
T 3q7m_A 186 TAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALAYNGNLTALDLRSGQ-- 260 (376)
T ss_dssp EETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETTEEEEECTTSCEEEEETTTCC--
T ss_pred EECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEecCcEEEEEECCCCc--
Confidence 447888998875 47889999987654443221 123433 245555544 445555664 444
Q ss_pred cCCceeecCC---CcEEEEeCCEEEEEeC-CeEEEEEccCCCceeEEEe-eCCc--ccccccCCeEEEecc-ceEEEeec
Q 003405 229 QADRICWSEA---PIAVIIQKPYAIALLP-RRVEVRSLRVPYALIQTIV-LQNV--RHLIPSSNAVVVALE-NSIFGLFP 300 (823)
Q Consensus 229 ~~~~i~w~~~---P~~v~~~~PYll~~~~-~~ieV~~l~~~~~lvQ~i~-l~~~--~~l~~~~~~v~v~s~-~~I~~l~~ 300 (823)
+.|... +...+...-.+++... +.+..++.. ++...-... +... ......++.+|+++. +.|+++.+
T Consensus 261 ----~~w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~ 335 (376)
T 3q7m_A 261 ----IMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTID-GGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINV 335 (376)
T ss_dssp ----EEEEECCCCEEEEEEETTEEEEEETTCCEEEEETT-TCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEET
T ss_pred ----EEeeccCCCCCCceEECCEEEEEcCCCeEEEEECC-CCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEEC
Confidence 345332 2345566777777775 477777875 466554443 2111 111223556666653 46777765
Q ss_pred c
Q 003405 301 V 301 (823)
Q Consensus 301 ~ 301 (823)
.
T Consensus 336 ~ 336 (376)
T 3q7m_A 336 E 336 (376)
T ss_dssp T
T ss_pred C
Confidence 4
No 229
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=80.35 E-value=13 Score=40.86 Aligned_cols=121 Identities=8% Similarity=0.005 Sum_probs=77.4
Q ss_pred EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEE-----------cCeEEEEEEcCCCceeEeeeecCC--------
Q 003405 97 IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFAR-----------QKRVCIFRHDGGRGFVEVKDFGVP-------- 157 (823)
Q Consensus 97 l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~-----------kkki~l~~~~~~~~f~~~kei~~~-------- 157 (823)
|.++|+.+++.+.+++--+.- -++++++...+.|+. ...|.++... ..+.++++.++
T Consensus 101 VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~---t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 101 QFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV---TFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT---TCCEEEEEEETTCCCCCBS
T ss_pred EEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC---CCcEEEEEECCCccccccC
Confidence 899999998877666544444 788999888888874 2345555433 34556677665
Q ss_pred CCceEEEec--CCeEEEEEc---CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE-EeCCeEEEEcC
Q 003405 158 DTVKSMSWC--GENICIAIR---KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-GKENIGVFVDQ 223 (823)
Q Consensus 158 ~~~~~l~~~--~~~i~v~~~---~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL-~~~~~gvfv~~ 223 (823)
..|..+.+. |..++|+.. +...+||+.++++..-++.+.. ..+.+.++..|+. |.++..++++.
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~~dG~~~~V~~ 246 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNCRDGSLARVDF 246 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSSEEEEEC
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEcCCCCEEEEEC
Confidence 457778886 668999873 4689999999887655554321 1222223344443 45555555554
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=80.02 E-value=41 Score=31.80 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=44.5
Q ss_pred cChhHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhcC
Q 003405 301 VPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQ 366 (823)
Q Consensus 301 ~~~~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~ 366 (823)
.+.+.+-+.-++-|+++.|.++++.... ....++.|..-..+|+++-|...|.+++
T Consensus 6 ~D~~~rF~LAL~lg~l~~A~e~a~~l~~----------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 6 QDPHIRFDLALEYGNLDAALDEAKKLND----------SITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CChHHHHHHHHhcCCHHHHHHHHHHhCC----------HHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3566777778999999999999987621 2346667888899999999999999854
No 231
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=79.98 E-value=3.7 Score=35.43 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=46.7
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhcCCCHHHHHHhCCCC
Q 003405 304 GAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSI 379 (823)
Q Consensus 304 ~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dP~~vi~Lfp~l 379 (823)
-.....+++.|+|++|+..++......+ ............|..++..|+|++|...|.+ ++.++|+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~-------~~~~~p~~ 72 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYP--NGVYTPNALYWLGESYYATRNFQLAEAQFRD-------LVSRYPTH 72 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS--SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH-------HHHHCTTS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCC--CCcccHHHHHHHHHHHHHhccHHHHHHHHHH-------HHHHCCCC
Confidence 3456677899999999999976421110 0011235666789999999999999999986 45666654
No 232
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=79.15 E-value=44 Score=32.14 Aligned_cols=59 Identities=10% Similarity=0.080 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 305 ~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.....+++.|+|++|+..++......+ ............|..++..|+|++|+..|.+.
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~ 67 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYP--FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF 67 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 456678999999999999987521111 01123456667799999999999999998873
No 233
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=78.56 E-value=57 Score=32.63 Aligned_cols=190 Identities=10% Similarity=0.014 Sum_probs=100.5
Q ss_pred CcEEEEEEe-CCEEEEEeCC-CcEEEEcCCCCCCCCCCCCcccccccccce-eeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 17 PKIDAVASY-GLKILLGCSD-GSLKIYSPGSSESDRSPPSDYQSLRKESYE-LERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 17 ~~I~ci~~~-~~~L~vGT~~-G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~-l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
..+.+++.. ++++|+++.. +.|..|+..... +. +...........+..|.+.++.++.++-
T Consensus 69 ~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~----------------~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd 132 (296)
T 3e5z_A 69 HHQNGHCLNKQGHLIACSHGLRRLERQREPGGE----------------WESIADSFEGKKLNSPNDVCLAPDGSLWFSD 132 (296)
T ss_dssp SSEEEEEECTTCCEEEEETTTTEEEEECSTTCC----------------EEEEECEETTEECCCCCCEEECTTSCEEEEE
T ss_pred CCcceeeECCCCcEEEEecCCCeEEEEcCCCCc----------------EEEEeeccCCCCCCCCCCEEECCCCCEEEEC
Confidence 357777765 4678998874 788888753211 11 1111111112356678888877766642
Q ss_pred e------------------C-cEEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEE--cCeEEEEEEcCCCce-eEe
Q 003405 94 S------------------E-SIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHDGGRGF-VEV 151 (823)
Q Consensus 94 ~------------------d-~l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~~~~~f-~~~ 151 (823)
+ . +|..++.. -+...........+.++++++...+ |+. ..+|.+|....+..+ ...
T Consensus 133 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~ 210 (296)
T 3e5z_A 133 PTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQG 210 (296)
T ss_dssp CSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEE
T ss_pred CccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCC
Confidence 1 1 24444432 1111112233455678888776666 553 467888887632234 222
Q ss_pred eee-cCCCCceEEEec-CCeEEEEEcCceEEEEcCCCCeeeccCCCCCCCCEEEE-ccCCe-EEEEeCCeEEEEcCCCc
Q 003405 152 KDF-GVPDTVKSMSWC-GENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVS-LLSGE-LLLGKENIGVFVDQNGK 226 (823)
Q Consensus 152 kei-~~~~~~~~l~~~-~~~i~v~~~~~y~lidl~~~~~~~L~~~~~~~~p~i~~-~~~~E-fLL~~~~~gvfv~~~G~ 226 (823)
+.+ .....|.+|++. +..|++++..+..++|.. |+....+..... ...++. -+++. +.++..+..+-++....
T Consensus 211 ~~~~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~ 287 (296)
T 3e5z_A 211 VHFTVEPGKTDGLRVDAGGLIWASAGDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVR 287 (296)
T ss_dssp EEECCSSSCCCSEEEBTTSCEEEEETTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCC
T ss_pred eEeeCCCCCCCeEEECCCCCEEEEcCCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccc
Confidence 222 124567889887 346888887788889986 554443333222 122222 23444 44455554444555443
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=77.95 E-value=57 Score=32.24 Aligned_cols=187 Identities=13% Similarity=0.055 Sum_probs=104.3
Q ss_pred cEEEEEEe--CCEEEEEeC-CCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe
Q 003405 18 KIDAVASY--GLKILLGCS-DGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 18 ~I~ci~~~--~~~L~vGT~-~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
.+.+++.. +++||+... +|.|..++..+... ..+....-.....|.+.+..+.+.+..
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-------------------~~~~~~~~~~p~~ia~d~~~~~lyv~d 97 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-------------------TTIIRQDLGSPEGIALDHLGRTIFWTD 97 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-------------------EEEECTTCCCEEEEEEETTTTEEEEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-------------------EEEEECCCCCccEEEEEecCCeEEEEE
Confidence 34566664 578988764 67888888653210 111111113567888887655555443
Q ss_pred C--c-EEEEeCCCCcccccc-cCCCCcEEEEeeCCCceEEEEEc----CeEEEEEEcCCCceeEeeeecCCCCceEEEec
Q 003405 95 E--S-IAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFARQ----KRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC 166 (823)
Q Consensus 95 d--~-l~~~~L~~l~~~~~i-~~~kg~~~fa~~~~~~~l~V~~k----kki~l~~~~~~~~f~~~kei~~~~~~~~l~~~ 166 (823)
. + |.++++..-.....+ ........++++++.+.+.|+.. .+|..+..++. ....+.... -..|.+|++.
T Consensus 98 ~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~-~~~P~gia~d 175 (267)
T 1npe_A 98 SQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDN-LGLPNGLTFD 175 (267)
T ss_dssp TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTT-CSCEEEEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECC-CCCCcEEEEc
Confidence 2 2 888887532111111 12345678899987788888743 35555555432 222221111 1468899997
Q ss_pred --CCeEEEEEc--CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEEEe--CCeEEEEcCC-Ccc
Q 003405 167 --GENICIAIR--KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGK--ENIGVFVDQN-GKL 227 (823)
Q Consensus 167 --~~~i~v~~~--~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL~~--~~~gvfv~~~-G~~ 227 (823)
++.|+|+.. +....+|..++....+.+.. ..|.-+.+.++.+.++. ++....++.+ |+.
T Consensus 176 ~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~--~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 176 AFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL--QYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKE 241 (267)
T ss_dssp TTTTEEEEEETTTTEEEEEETTEEEEEEEEECC--CSEEEEEEETTEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCCEEEEEECCCCEEEEEecCCCceEEEecCC--CCceEEEEeCCEEEEEECCCCeEEEEeCCCCCc
Confidence 568999987 45777888765444444322 34665555544444442 2444556764 553
No 235
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=77.53 E-value=65 Score=32.73 Aligned_cols=219 Identities=11% Similarity=0.103 Sum_probs=111.3
Q ss_pred CCeeEEEEecccCceeeEeC-c-EEEEeCCCCcccccc-cCCCCcEEEEeeCCCceEEEEEc-C-----eEEEEEEcCCC
Q 003405 76 KPILSMEVLASRQLLLSLSE-S-IAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFARQ-K-----RVCIFRHDGGR 146 (823)
Q Consensus 76 ~~I~qI~~~~~~~~Ll~l~d-~-l~~~~L~~l~~~~~i-~~~kg~~~fa~~~~~~~l~V~~k-k-----ki~l~~~~~~~ 146 (823)
..+..+...++.+++++-+. + |.+|+..+-+..... .....+..++++++. .+.|+.. . .|.+|....+
T Consensus 45 ~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~- 122 (333)
T 2dg1_A 45 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGD- 122 (333)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSC-
T ss_pred ccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCC-
Confidence 34577777777664443333 3 889987543322111 223467788888664 5555543 2 4544443322
Q ss_pred ceeE-eeeecCCCCceEEEec-CCeEEEEEcC--------ceEEEEcCCCCeeeccCCCCCCCCE-EEEccCCeEE-EEe
Q 003405 147 GFVE-VKDFGVPDTVKSMSWC-GENICIAIRK--------GYMILNATNGALSEVFPSGRIGPPL-VVSLLSGELL-LGK 214 (823)
Q Consensus 147 ~f~~-~kei~~~~~~~~l~~~-~~~i~v~~~~--------~y~lidl~~~~~~~L~~~~~~~~p~-i~~~~~~EfL-L~~ 214 (823)
.+.. .........|.++++. ++.+++++.. ....+|..+++...+.... ..|. +...+++..+ ++.
T Consensus 123 ~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~ 200 (333)
T 2dg1_A 123 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI--SVANGIALSTDEKVLWVTE 200 (333)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE--SSEEEEEECTTSSEEEEEE
T ss_pred EEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC--CcccceEECCCCCEEEEEe
Confidence 2331 1111223467888887 3467777753 3555666666655443211 1233 3334566654 332
Q ss_pred --CCeEEEEcC--CCcccc----CCceeecC--CCcEEEEeC-CEEEEEe--CCeEEEEEccCCCceeEEEeeCCc----
Q 003405 215 --ENIGVFVDQ--NGKLLQ----ADRICWSE--APIAVIIQK-PYAIALL--PRRVEVRSLRVPYALIQTIVLQNV---- 277 (823)
Q Consensus 215 --~~~gvfv~~--~G~~~~----~~~i~w~~--~P~~v~~~~-PYll~~~--~~~ieV~~l~~~~~lvQ~i~l~~~---- 277 (823)
++....++. +|.... +....+.. .|..+++.. -.+.+.. .+.|.+++. + +..++++..+..
T Consensus 201 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~-g~~~~~~~~~~~~~g~ 278 (333)
T 2dg1_A 201 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-R-GYPIGQILIPGRDEGH 278 (333)
T ss_dssp GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-T-SCEEEEEECTTGGGTC
T ss_pred CCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-C-CCEEEEEEcCCCcccc
Confidence 233444554 443211 00111222 566666652 2333333 467888876 3 667777776532
Q ss_pred ----ccc--cccCCeEEEeccc-------eEEEeec
Q 003405 278 ----RHL--IPSSNAVVVALEN-------SIFGLFP 300 (823)
Q Consensus 278 ----~~l--~~~~~~v~v~s~~-------~I~~l~~ 300 (823)
..+ ...++.+|+++.. .||++..
T Consensus 279 ~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 279 MLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp SCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred ccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence 111 2234567777654 6888764
No 236
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=77.07 E-value=3.6 Score=40.22 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=16.6
Q ss_pred HHHHHHHccCCHHHHHHHHHh
Q 003405 344 RFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 344 ~~a~~lf~~~~f~~A~~~f~~ 364 (823)
..|..++..|+|++|...|.+
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~ 29 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEA 29 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 347778888888888888876
No 237
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=76.77 E-value=49 Score=30.87 Aligned_cols=56 Identities=16% Similarity=0.079 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 305 ~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.....+...|++++|+..++.....+ .....++...|..++..|+|++|...|.++
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 68 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSD-----PKNELAWLVRAEIYQYLKVNDKAQESFRQA 68 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-----ccchHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34556678999999999987642111 012345667789999999999999999873
No 238
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=76.38 E-value=69 Score=32.40 Aligned_cols=109 Identities=10% Similarity=0.106 Sum_probs=60.9
Q ss_pred CeeEEEEecccCceeeEe------------------C-cEEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEEc---
Q 003405 77 PILSMEVLASRQLLLSLS------------------E-SIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQ--- 134 (823)
Q Consensus 77 ~I~qI~~~~~~~~Ll~l~------------------d-~l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~k--- 134 (823)
.+..|.+.++.++.++=. . +|..++..+-+.. .+......+.++++++...+.|+..
T Consensus 132 ~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~-~~~~~~~p~gl~~spdg~~lyv~~~~~~ 210 (305)
T 3dr2_A 132 SPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ-RMADLDHPNGLAFSPDEQTLYVSQTPEQ 210 (305)
T ss_dssp CCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE-EEEEESSEEEEEECTTSSEEEEEECCC-
T ss_pred CCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE-EEecCCCCcceEEcCCCCEEEEEecCCc
Confidence 466677777766655310 1 2555554222111 1112344566788877666777733
Q ss_pred ----CeEEEEEEcCCCceeEeeee-c-CCCCceEEEec-CCeEEEEEcCceEEEEcCCCCe
Q 003405 135 ----KRVCIFRHDGGRGFVEVKDF-G-VPDTVKSMSWC-GENICIAIRKGYMILNATNGAL 188 (823)
Q Consensus 135 ----kki~l~~~~~~~~f~~~kei-~-~~~~~~~l~~~-~~~i~v~~~~~y~lidl~~~~~ 188 (823)
++|..|....+. +...+.+ . .+..|.+|++. +..|++++..+..++|.+ |+.
T Consensus 211 ~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~gv~~~~~~-g~~ 269 (305)
T 3dr2_A 211 GHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTGVCVFDSD-GQL 269 (305)
T ss_dssp --CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECCSSEEEEECTT-SCE
T ss_pred CCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEecCCcEEEECCC-CCE
Confidence 578788776442 2221211 1 23466778876 335888887888888874 443
No 239
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=76.27 E-value=74 Score=32.69 Aligned_cols=184 Identities=10% Similarity=0.004 Sum_probs=98.3
Q ss_pred EEEEEEeC--C-EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC
Q 003405 19 IDAVASYG--L-KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE 95 (823)
Q Consensus 19 I~ci~~~~--~-~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d 95 (823)
.++..... + .+++++.+|.|+.|+..... .+.+. . ...|..|...++.+++++..+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~-------------------~~~~~-~-~~~v~~i~~~~dg~l~v~~~~ 109 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGR-------------------KTVHA-L-PFMGSALAKISDSKQLIASDD 109 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTE-------------------EEEEE-C-SSCEEEEEEEETTEEEEEETT
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCc-------------------EEEEE-C-CCcceEEEEeCCCeEEEEECC
Confidence 45555443 3 56777888999999754311 11111 1 346888888888776665544
Q ss_pred cEEEEeCCCCc--ccccccC---CCCcEEEEeeCCCceEEEEEc------CeEEEEEEcCCCceeEeeeecCCCCceEEE
Q 003405 96 SIAFHRLPNLE--TIAVLTK---AKGANVYSWDDRRGFLCFARQ------KRVCIFRHDGGRGFVEVKDFGVPDTVKSMS 164 (823)
Q Consensus 96 ~l~~~~L~~l~--~~~~i~~---~kg~~~fa~~~~~~~l~V~~k------kki~l~~~~~~~~f~~~kei~~~~~~~~l~ 164 (823)
+|..++..+-+ ....... ...++.++++++ |.+.++.. ....||.+. +..+..+.+ -...+.+++
T Consensus 110 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~-G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~--~~~~~~~i~ 185 (326)
T 2ghs_A 110 GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVA-KGKVTKLFA--DISIPNSIC 185 (326)
T ss_dssp EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEE--EESSEEEEE
T ss_pred CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCC-CCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeC--CCcccCCeE
Confidence 78888875432 2211111 123566777765 45666642 234566666 333433221 113567888
Q ss_pred ec--CCeEEEEEc--CceEEEEcC--CC-Cee---eccCCC-CCCCCEEEEc-cCCeEEEEe--CCeEEEEcCCCcc
Q 003405 165 WC--GENICIAIR--KGYMILNAT--NG-ALS---EVFPSG-RIGPPLVVSL-LSGELLLGK--ENIGVFVDQNGKL 227 (823)
Q Consensus 165 ~~--~~~i~v~~~--~~y~lidl~--~~-~~~---~L~~~~-~~~~p~i~~~-~~~EfLL~~--~~~gvfv~~~G~~ 227 (823)
|. |+.++++.. ....++|+. +| ... .+.... ....|--+.+ .++.+.++. ++....++.+|+.
T Consensus 186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~ 262 (326)
T 2ghs_A 186 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNH 262 (326)
T ss_dssp ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCE
T ss_pred EcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCE
Confidence 87 446888875 457778875 55 321 111111 1122333333 455666654 3444556776654
No 240
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=76.03 E-value=6.8 Score=45.66 Aligned_cols=116 Identities=9% Similarity=0.135 Sum_probs=70.6
Q ss_pred eeEEEEecccCceeeEeCc-EEEEeCCCCcccccccCCC----CcEEEEeeCCCceEEEEEc----------CeEEEEEE
Q 003405 78 ILSMEVLASRQLLLSLSES-IAFHRLPNLETIAVLTKAK----GANVYSWDDRRGFLCFARQ----------KRVCIFRH 142 (823)
Q Consensus 78 I~qI~~~~~~~~Ll~l~d~-l~~~~L~~l~~~~~i~~~k----g~~~fa~~~~~~~l~V~~k----------kki~l~~~ 142 (823)
+..+...|+..++.+-.|+ |.+|++.+-+....+.... ++..++++++...|+.+.. ..+.++..
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~ 98 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI 98 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEEC
Confidence 4445556666655442244 8999876544322222212 4788999998777877754 44556655
Q ss_pred cCCCceeEeeeecC-CCCceEEEec--CCeEEEEEcCceEEEEcCCCCeeeccCC
Q 003405 143 DGGRGFVEVKDFGV-PDTVKSMSWC--GENICIAIRKGYMILNATNGALSEVFPS 194 (823)
Q Consensus 143 ~~~~~f~~~kei~~-~~~~~~l~~~--~~~i~v~~~~~y~lidl~~~~~~~L~~~ 194 (823)
..+. .+.+....- ...+.+++|. |..|+++......++|+.+++...+...
T Consensus 99 ~~~~-~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 99 PHGD-PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp SSCC-CEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECC
T ss_pred CCCc-eEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecC
Confidence 5332 222221111 1237778887 5689999888889999999887766554
No 241
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=76.01 E-value=53 Score=34.38 Aligned_cols=57 Identities=5% Similarity=0.028 Sum_probs=39.2
Q ss_pred HHHhcCCHHHHHHHhhhCCCcchHhh-hhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 309 QLTASGDFEEALALCKLLPPEDASLR-AAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 309 ~Ll~~~~~e~Al~L~~~~~~~~~~~~-~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.+...|+|++|+..++.....-.... ......++...|..++..|+|++|+.+|.++
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34578999999998876311000000 1123466778899999999999999999874
No 242
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=75.62 E-value=1.3 Score=39.23 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=40.0
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
=..++++|+|++|+...+.....++ .-..++...|..++..|+|++|+..|.++
T Consensus 20 G~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 20 GNEYFKKGDYPTAMRHYNEAVKRDP-----ENAILYSNRAACLTKLMEFQRALDDCDTC 73 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence 3457889999999999876311111 12346677799999999999999999873
No 243
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=75.33 E-value=3.2 Score=34.68 Aligned_cols=56 Identities=20% Similarity=0.140 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 305 ~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.....+...|+|++|+..++.....++ ....++...|..++..|+|++|+..|.++
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQLITAQP-----QNPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344566789999999999876421110 12345677899999999999999999873
No 244
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=75.17 E-value=71 Score=31.96 Aligned_cols=189 Identities=10% Similarity=0.083 Sum_probs=96.8
Q ss_pred EEEEEEe-CCEEEEE--------eCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecc-cC
Q 003405 19 IDAVASY-GLKILLG--------CSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS-RQ 88 (823)
Q Consensus 19 I~ci~~~-~~~L~vG--------T~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~-~~ 88 (823)
.++++.. ++.+|++ +.+|.|+.|+...... ..+.. ....+. ...+..|.+.+. .+
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-------------~~~~~-~~~~~~-~~~~~~i~~~~~~g~ 84 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK-------------TVICK-PEVNGY-GGIPAGCQCDRDANQ 84 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE-------------EEEEC-CEETTE-ECCEEEEEECSSSSE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE-------------EEEEe-cccCCC-CCCCceEEEecCCCc
Confidence 4555543 4678887 7889999997532110 00000 000001 245778887777 44
Q ss_pred ceeeEeC-cEEEEeCCCCcccccc-c------CCCCcEEEEeeCCCceEEEEEcCe---------------EEEEEEcCC
Q 003405 89 LLLSLSE-SIAFHRLPNLETIAVL-T------KAKGANVYSWDDRRGFLCFARQKR---------------VCIFRHDGG 145 (823)
Q Consensus 89 ~Ll~l~d-~l~~~~L~~l~~~~~i-~------~~kg~~~fa~~~~~~~l~V~~kkk---------------i~l~~~~~~ 145 (823)
+.++-.+ +|..|+.. -+ ...+ . ....++.++++++ +.+.|+.... -.||.++.+
T Consensus 85 l~v~~~~~~l~~~d~~-g~-~~~~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (314)
T 1pjx_A 85 LFVADMRLGLLVVQTD-GT-FEEIAKKDSEGRRMQGCNDCAFDYE-GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD 161 (314)
T ss_dssp EEEEETTTEEEEEETT-SC-EEECCSBCTTSCBCBCCCEEEECTT-SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT
T ss_pred EEEEECCCCEEEEeCC-CC-EEEEEeccCCCccccCCcCEEECCC-CCEEEEecCcccccccccccccCCCCeEEEECCC
Confidence 4444434 58888865 22 1111 0 1134667888765 4676665432 457777643
Q ss_pred CceeEeeeecCCCCceEEEec----CC--eEEEEEc--CceEEEEcC-CCCee---ec--cCCCCCCCCEEEE-ccCCeE
Q 003405 146 RGFVEVKDFGVPDTVKSMSWC----GE--NICIAIR--KGYMILNAT-NGALS---EV--FPSGRIGPPLVVS-LLSGEL 210 (823)
Q Consensus 146 ~~f~~~kei~~~~~~~~l~~~----~~--~i~v~~~--~~y~lidl~-~~~~~---~L--~~~~~~~~p~i~~-~~~~Ef 210 (823)
..+..... -...+.+++|. .+ .++++.. .....+|.. +++.. .+ ++.+....|.-+. -+++.+
T Consensus 162 g~~~~~~~--~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l 239 (314)
T 1pjx_A 162 GQMIQVDT--AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL 239 (314)
T ss_dssp SCEEEEEE--EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred CCEEEecc--CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCE
Confidence 33432211 12356788887 44 5777764 457778875 44321 11 1211102243333 355677
Q ss_pred EEEe--CCeEEEEcCC-Ccc
Q 003405 211 LLGK--ENIGVFVDQN-GKL 227 (823)
Q Consensus 211 LL~~--~~~gvfv~~~-G~~ 227 (823)
.++. ++....++.+ |+.
T Consensus 240 ~v~~~~~~~i~~~d~~~g~~ 259 (314)
T 1pjx_A 240 LVANWGSSHIEVFGPDGGQP 259 (314)
T ss_dssp EEEEETTTEEEEECTTCBSC
T ss_pred EEEEcCCCEEEEEcCCCCcE
Confidence 6653 3444556766 653
No 245
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=75.00 E-value=4.1 Score=37.50 Aligned_cols=61 Identities=16% Similarity=0.136 Sum_probs=44.0
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhcCCCHHHHHHhCCCC
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSI 379 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dP~~vi~Lfp~l 379 (823)
-..+.+.|+|++|+..++.....++ .-...+...|..++..|+|++|+..|.+ .+.+.|+.
T Consensus 43 g~~~~~~g~~~eA~~~~~~al~~~P-----~~~~~~~~lg~~~~~~g~~~~Ai~~~~~-------al~l~P~~ 103 (151)
T 3gyz_A 43 AYDFYNKGRIEEAEVFFRFLCIYDF-----YNVDYIMGLAAIYQIKEQFQQAADLYAV-------AFALGKND 103 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHH-------HHHHSSSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHccHHHHHHHHHH-------HHhhCCCC
Confidence 3456789999999999976421111 1234566679999999999999999987 45666654
No 246
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=74.51 E-value=5.4 Score=34.33 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=44.4
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhcCCCHHHHHHhCCCC
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSI 379 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dP~~vi~Lfp~l 379 (823)
...+...|+|++|+..++.....++ ............|..++..|++++|...|.+ ++..+|+.
T Consensus 46 g~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-------~~~~~p~~ 109 (129)
T 2xev_A 46 GESYYATRNFQLAEAQFRDLVSRYP--THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQ-------VATQYPGS 109 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT--TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH-------HHHHSTTS
T ss_pred HHHHHHhccHHHHHHHHHHHHHHCC--CCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-------HHHHCCCC
Confidence 3455789999999999876421110 0011245566779999999999999999985 56677654
No 247
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=74.43 E-value=82 Score=32.33 Aligned_cols=153 Identities=14% Similarity=0.049 Sum_probs=82.7
Q ss_pred CCcEEEEEEe-CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeec-CCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASY-GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTIS-GFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~-~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~-~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
+..+.|+... ++++++|+.+| |+.|+..... +....... ......+..+.+.++.++.+.-
T Consensus 89 ~~~v~~i~~~~dg~l~v~~~~g-l~~~d~~~g~----------------~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~ 151 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIASDDG-LFLRDTATGV----------------LTLHAELESDLPGNRSNDGRMHPSGALWIGT 151 (326)
T ss_dssp SSCEEEEEEEETTEEEEEETTE-EEEEETTTCC----------------EEEEECSSTTCTTEEEEEEEECTTSCEEEEE
T ss_pred CCcceEEEEeCCCeEEEEECCC-EEEEECCCCc----------------EEEEeeCCCCCCCCCCCCEEECCCCCEEEEe
Confidence 4567887654 57899999887 7777753211 11111100 1112357888888887765543
Q ss_pred eC--------cEEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEE--cCeEEEEEEc--CCCcee---Eeeeec-CC
Q 003405 94 SE--------SIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHD--GGRGFV---EVKDFG-VP 157 (823)
Q Consensus 94 ~d--------~l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~--~~~~f~---~~kei~-~~ 157 (823)
.+ +|..++ +-+...........+.++++++...++++. .++|.+|... .+..+. .+..+. ..
T Consensus 152 ~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~ 229 (326)
T 2ghs_A 152 MGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK 229 (326)
T ss_dssp EETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS
T ss_pred CCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC
Confidence 31 255554 221111111223455677887766677764 4577777764 220111 111221 23
Q ss_pred CCceEEEec-CCeEEEEE--cCceEEEEcCCCCe
Q 003405 158 DTVKSMSWC-GENICIAI--RKGYMILNATNGAL 188 (823)
Q Consensus 158 ~~~~~l~~~-~~~i~v~~--~~~y~lidl~~~~~ 188 (823)
..|.++++. ++.+++++ ..+...+|. +++.
T Consensus 230 ~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~ 262 (326)
T 2ghs_A 230 GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH 262 (326)
T ss_dssp SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCE
T ss_pred CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCE
Confidence 467788887 34688887 356777887 4544
No 248
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=74.13 E-value=1e+02 Score=33.23 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=42.4
Q ss_pred hhHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 303 LGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 303 ~~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
+......+++.|++++|+..++.....++ .....+...|..++..|+|++|...|.++
T Consensus 42 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 42 YSNLSACYVSVGDLKKVVEMSTKALELKP-----DYSKVLLRRASANEGLGKFADAMFDLSVL 99 (514)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHhccCh-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34455667889999999999976421110 12345667899999999999999999874
No 249
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=73.41 E-value=5.6 Score=39.61 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh
Q 003405 549 YTALLELYKSNARHREALKLLHELVE 574 (823)
Q Consensus 549 ~~~L~~ly~~~g~~~~AL~ll~~l~~ 574 (823)
+..++.+|...|++++|+..+.+...
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~ 176 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFD 176 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45788999999999999999988764
No 250
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=73.23 E-value=19 Score=41.87 Aligned_cols=112 Identities=13% Similarity=0.324 Sum_probs=67.7
Q ss_pred EEEecccCceeeEeCc-EEEEeCCCCcccccccCC----CCcEEEEeeCCCceEEEEEc----------CeEEEEEEcCC
Q 003405 81 MEVLASRQLLLSLSES-IAFHRLPNLETIAVLTKA----KGANVYSWDDRRGFLCFARQ----------KRVCIFRHDGG 145 (823)
Q Consensus 81 I~~~~~~~~Ll~l~d~-l~~~~L~~l~~~~~i~~~----kg~~~fa~~~~~~~l~V~~k----------kki~l~~~~~~ 145 (823)
+...|...++..-.|+ |.+|++.+-+....+... .++..++++++...|+.+.. ..|.++....+
T Consensus 21 ~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g 100 (719)
T 1z68_A 21 PNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG 100 (719)
T ss_dssp CEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred cEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence 3344554333322344 999998765432221111 24778899998877877754 34545544433
Q ss_pred CceeEeeeecCCCCceEEEec--CCeEEEEEcCceEEEEcCCCCeeeccCCC
Q 003405 146 RGFVEVKDFGVPDTVKSMSWC--GENICIAIRKGYMILNATNGALSEVFPSG 195 (823)
Q Consensus 146 ~~f~~~kei~~~~~~~~l~~~--~~~i~v~~~~~y~lidl~~~~~~~L~~~~ 195 (823)
.. .....+++.+.+++|. |..|+++..+...+.|+.+|+...+...+
T Consensus 101 -~~--~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~ 149 (719)
T 1z68_A 101 -EF--VRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNG 149 (719)
T ss_dssp -EE--CCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCC
T ss_pred -cc--ccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCC
Confidence 12 1112234678888997 56798888888999999988776665433
No 251
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=73.16 E-value=2.1 Score=37.24 Aligned_cols=57 Identities=12% Similarity=0.027 Sum_probs=42.1
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 304 GAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 304 ~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
...-..++..|+|++|+..++.....+ .....++...|..++..|+|++|+..|.++
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRA-----PEDARGYSNRAAALAKLMSFPEAIADCNKA 64 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344566789999999999987631111 012356777899999999999999999873
No 252
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=73.14 E-value=75 Score=31.33 Aligned_cols=184 Identities=9% Similarity=0.043 Sum_probs=101.0
Q ss_pred CcEEEEEEeC-CEEEEEeC-CCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe
Q 003405 17 PKIDAVASYG-LKILLGCS-DGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 17 ~~I~ci~~~~-~~L~vGT~-~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
..+.+++... +++|+++. +|.|..|+..+. +.. .... .....+..|.+.+..++.++-.
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~-----------------~~~-~~~~-~~~~~~~~i~~~~~g~l~v~~~ 122 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKKGG-----------------FTE-YPLP-QPDSGPYGITEGLNGDIWFTQL 122 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTSC-----------------EEE-EECS-STTCCEEEEEECSTTCEEEEET
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCCCC-----------------eEE-ecCC-CCCCCCccceECCCCCEEEEcc
Confidence 4577777654 68999987 677888874411 110 0111 1124677888887766555544
Q ss_pred C--cEEEEeCCCCccc-cccc-CCCCcEEEEeeCCCceEEEEEc--CeEEEEEEcCCCceeEeeeecCC---CCceEEEe
Q 003405 95 E--SIAFHRLPNLETI-AVLT-KAKGANVYSWDDRRGFLCFARQ--KRVCIFRHDGGRGFVEVKDFGVP---DTVKSMSW 165 (823)
Q Consensus 95 d--~l~~~~L~~l~~~-~~i~-~~kg~~~fa~~~~~~~l~V~~k--kki~l~~~~~~~~f~~~kei~~~---~~~~~l~~ 165 (823)
. +|..++.. -+.. ..++ ....+..++++++ +.+.|+.. .+|..|.. +..+.. +..+ ..|.++++
T Consensus 123 ~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~--~g~~~~---~~~~~~~~~~~~i~~ 195 (300)
T 2qc5_A 123 NGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD-NALWFTENQNNSIGRITN--TGKLEE---YPLPTNAAAPVGITS 195 (300)
T ss_dssp TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT--TCCEEE---EECSSTTCCEEEEEE
T ss_pred CCCeEEEECCC-CCEEEccCCCCCCCceeEEECCC-CCEEEEecCCCeEEEECC--CCcEEE---eeCCCCCCCcceEEE
Confidence 2 37777764 2111 1111 2345677777765 45777753 45544433 223332 2222 35788888
Q ss_pred c-CCeEEEEEc--CceEEEEcCCCCeeeccCCCCCCCCEEEEc-cCCeEEEEe--CCeEEEEcCCCcc
Q 003405 166 C-GENICIAIR--KGYMILNATNGALSEVFPSGRIGPPLVVSL-LSGELLLGK--ENIGVFVDQNGKL 227 (823)
Q Consensus 166 ~-~~~i~v~~~--~~y~lidl~~~~~~~L~~~~~~~~p~i~~~-~~~EfLL~~--~~~gvfv~~~G~~ 227 (823)
. ++.++++.. .....+|. +++............|..+.. +++.+.++. ++....++.+|..
T Consensus 196 d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~ 262 (300)
T 2qc5_A 196 GNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTI 262 (300)
T ss_dssp CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCE
T ss_pred CCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcE
Confidence 7 457888886 34777887 555544321222234554444 456766664 3455567776653
No 253
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=73.13 E-value=81 Score=31.68 Aligned_cols=170 Identities=12% Similarity=0.115 Sum_probs=82.5
Q ss_pred EEEEEEe-CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC-c
Q 003405 19 IDAVASY-GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-S 96 (823)
Q Consensus 19 I~ci~~~-~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d-~ 96 (823)
+.++... ++++++ +.++.++.|+.++ ++..++.......+.....++..+++++-++ .
T Consensus 39 ~~~~~~~pdG~ilv-s~~~~V~~~d~~G-------------------~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~ 98 (276)
T 3no2_A 39 CNSVAATKAGEILF-SYSKGAKMITRDG-------------------RELWNIAAPAGCEMQTARILPDGNALVAWCGHP 98 (276)
T ss_dssp CCEEEECTTSCEEE-ECBSEEEEECTTS-------------------CEEEEEECCTTCEEEEEEECTTSCEEEEEESTT
T ss_pred CcCeEECCCCCEEE-eCCCCEEEECCCC-------------------CEEEEEcCCCCccccccEECCCCCEEEEecCCC
Confidence 3343333 346666 5566677776421 1223333222346777888888888888776 4
Q ss_pred --EEEEeCCCCccccccc---CCC----CcEEEEeeCCCceEEEE-EcCeEEEEEEcCCCceeEeeeecCCCCceEEEec
Q 003405 97 --IAFHRLPNLETIAVLT---KAK----GANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC 166 (823)
Q Consensus 97 --l~~~~L~~l~~~~~i~---~~k----g~~~fa~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~ 166 (823)
+..++. +-+.+.... ... ....+++..+...+++. ...+|..|... ++ .+.++..+..|.+....
T Consensus 99 ~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~---~~w~~~~~~~~~~~~~~ 173 (276)
T 3no2_A 99 STILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ---LLNSVKLSGTPFSSAFL 173 (276)
T ss_dssp EEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC---EEEEEECSSCCCEEEEC
T ss_pred CEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC---EEEEEECCCCccceeEc
Confidence 444442 111111100 000 11122334433333333 24455555444 32 23444455566666665
Q ss_pred --CCeEEEEEcCc-eEEEEcCCCCeeeccCCC-----CCCCCEE-EEccCCeEEEE
Q 003405 167 --GENICIAIRKG-YMILNATNGALSEVFPSG-----RIGPPLV-VSLLSGELLLG 213 (823)
Q Consensus 167 --~~~i~v~~~~~-y~lidl~~~~~~~L~~~~-----~~~~p~i-~~~~~~EfLL~ 213 (823)
|+.++.+...+ ...+|..+|+...-+... ....|.. ...+++.++++
T Consensus 174 ~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~ 229 (276)
T 3no2_A 174 DNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYIC 229 (276)
T ss_dssp TTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEE
Confidence 34454455443 677888888765444321 1111332 33467777775
No 254
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=73.02 E-value=21 Score=41.95 Aligned_cols=52 Identities=23% Similarity=0.283 Sum_probs=38.6
Q ss_pred HHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 309 QLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 309 ~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.+.+.|++++|+..+++....+ -.....+...|..++..|+|++|+..|.++
T Consensus 18 ~~~~~G~~~eAi~~~~kAl~l~-----P~~~~a~~nLg~~l~~~g~~~eA~~~~~~A 69 (723)
T 4gyw_A 18 IKREQGNIEEAVRLYRKALEVF-----PEFAAAHSNLASVLQQQGKLQEALMHYKEA 69 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4568899999999987631111 022345677799999999999999999873
No 255
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=72.79 E-value=3.4 Score=38.54 Aligned_cols=60 Identities=10% Similarity=0.004 Sum_probs=42.5
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc-CCCHHH
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS-QVDITY 371 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~-~~dP~~ 371 (823)
...+.+.|++++|+..++.....++ ....++...|..++..|+|++|+..|.++ .++|..
T Consensus 114 g~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 114 GLVYDSMGEHDKAIEAYEKTISIKP-----GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHhCCchhHHHHHHHHHHhcc-----hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 3445678899999988876421111 12345667799999999999999999884 567754
No 256
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=72.29 E-value=2e+02 Score=35.75 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=51.3
Q ss_pred CCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEeeeecCCCCceEEEec--------CCeEEEEEc--CceEEEEcC
Q 003405 115 KGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--------GENICIAIR--KGYMILNAT 184 (823)
Q Consensus 115 kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~--------~~~i~v~~~--~~y~lidl~ 184 (823)
+.+..-++++ ..++++....+.+|+.+.+ .+.......+++.|.|+++. ++.++||+. ....++++.
T Consensus 514 ~~I~~As~n~--~~vvva~g~~l~~fel~~~-~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 514 KNISVASCNS--SQVVVAVGRALYYLQIHPQ-ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCCEEEECS--SEEEEEETTEEEEEEEETT-EEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEeCC--CEEEEEECCEEEEEEeeCC-ceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 3455555554 4678887778888888854 45555567788999999985 367999994 568899998
Q ss_pred CCCee
Q 003405 185 NGALS 189 (823)
Q Consensus 185 ~~~~~ 189 (823)
+-+..
T Consensus 591 ~l~~~ 595 (1158)
T 3ei3_A 591 SFELL 595 (1158)
T ss_dssp TCCEE
T ss_pred CCCeE
Confidence 65443
No 257
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=72.17 E-value=54 Score=31.53 Aligned_cols=43 Identities=28% Similarity=0.001 Sum_probs=23.2
Q ss_pred hhhHHHHHhhccccHHHHHHHHHHHhCC--CchhHHHHHHHHhcC
Q 003405 730 LYEERAILLGKMNQHELALSLYVHKVFL--INQPVFLLIRRMAMD 772 (823)
Q Consensus 730 l~~e~~~Ll~klg~h~~AL~ilv~~L~D--~~~a~~~~l~~~y~~ 772 (823)
.....+.++.++|++++|+..+-.-+.- .....+..+..+|..
T Consensus 177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (252)
T 2ho1_A 177 VALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV 221 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3345566666677777776666554332 233444455555544
No 258
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=71.97 E-value=83 Score=31.35 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc
Q 003405 549 YTALLELYKSNARHREALKLLHELVEE 575 (823)
Q Consensus 549 ~~~L~~ly~~~g~~~~AL~ll~~l~~~ 575 (823)
+..++..|...|++++|++++.+....
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~ 51 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEK 51 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 446677778888888888888876543
No 259
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=71.38 E-value=49 Score=34.15 Aligned_cols=188 Identities=12% Similarity=0.036 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCcccccccCChHHHHHHhhcCCCCChhhHHHhhhhhhhcCcccccccc
Q 003405 549 YTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELF 628 (823)
Q Consensus 549 ~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~~~~~~~~~~i~yL~~L~~~~~~li~~y~~wll~~~p~~~~~if 628 (823)
+..++..|...|++++|++.+.+.....-.+ ... .......+..++ +.+--.++..-.++.+|.......
T Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~-----~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~ 171 (365)
T 4eqf_A 102 WQFLGITQAENENEQAAIVALQRCLELQPNN---LKA-----LMALAVSYTNTS--HQQDACEALKNWIKQNPKYKYLVK 171 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHH-----HHHHHHHHHHTT--CHHHHHHHHHHHHHHCHHHHCC--
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHH-----HHHHHHHHHccc--cHHHHHHHHHHHHHhCccchHHHh
Confidence 5678889999999999999998776432110 000 001111111112 333333444444444554322111
Q ss_pred ccC---CCChHHHHHHHhhcCchhHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccchHHHHH
Q 003405 629 LSG---NIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKK 705 (823)
Q Consensus 629 ~~~---~l~~~~Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~k 705 (823)
... .+-.....-+........+..+++..+.......++..+..|+..|... +...+...-
T Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~----------------g~~~~A~~~ 235 (365)
T 4eqf_A 172 NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS----------------GEFNRAIDA 235 (365)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH----------------TCHHHHHHH
T ss_pred hhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC----------------CCHHHHHHH
Confidence 100 0000000001111123456777777776432112677888888888764 011112222
Q ss_pred HHHHhhhcCCCChHHHhccCCCC-chhhHHHHHhhccccHHHHHHHHHHHh--CCCchhHHHHHHHHhcCCC
Q 003405 706 LLSALESISGYNPEVLLKRLPAD-ALYEERAILLGKMNQHELALSLYVHKV--FLINQPVFLLIRRMAMDIK 774 (823)
Q Consensus 706 Ll~fL~~s~~Yd~~~~L~~~~~~-~l~~e~~~Ll~klg~h~~AL~ilv~~L--~D~~~a~~~~l~~~y~~~~ 774 (823)
+...+ ...+.+ ..+...+.+|.++|++++|+..+-.-+ ..-....|..+...|...+
T Consensus 236 ~~~al------------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 236 FNAAL------------TVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHH------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHH------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 22222 223332 345677778888888888888876543 2223556666666666543
No 260
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=70.79 E-value=94 Score=31.47 Aligned_cols=154 Identities=9% Similarity=0.057 Sum_probs=86.5
Q ss_pred CCcEEEEEEe-CCEEEEEeCCC-----cEEEEcCCCCCCCCCCCCcccccccccceeeeeec-CCCCCCeeEEEEecccC
Q 003405 16 SPKIDAVASY-GLKILLGCSDG-----SLKIYSPGSSESDRSPPSDYQSLRKESYELERTIS-GFSKKPILSMEVLASRQ 88 (823)
Q Consensus 16 ~~~I~ci~~~-~~~L~vGT~~G-----~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~-~~~k~~I~qI~~~~~~~ 88 (823)
+..+.+++.. ++++|+++..+ .|+.|+..... .. .... ......+..|.+.++.+
T Consensus 86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~----------------~~--~~~~~~~~~~~~~~i~~d~~g~ 147 (333)
T 2dg1_A 86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN----------------LQ--DIIEDLSTAYCIDDMVFDSKGG 147 (333)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS----------------CE--EEECSSSSCCCEEEEEECTTSC
T ss_pred CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE----------------EE--EEEccCccCCcccceEECCCCC
Confidence 3567887765 45788888654 78888754321 11 0111 11234688898888877
Q ss_pred ceeeEeC--------cEEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEE--cCeEEEEEEcC-CCceeEee-e--e
Q 003405 89 LLLSLSE--------SIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHDG-GRGFVEVK-D--F 154 (823)
Q Consensus 89 ~Ll~l~d--------~l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~~-~~~f~~~k-e--i 154 (823)
+.++-.+ +|..++..+-+...........+.++++++...++|+. .++|.+|.... +..+.... . .
T Consensus 148 l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~ 227 (333)
T 2dg1_A 148 FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY 227 (333)
T ss_dssp EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE
T ss_pred EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE
Confidence 6665542 15555543211111111223456778887766677764 46787887752 22232211 1 1
Q ss_pred cCC--CCceEEEecC-CeEEEEEc--CceEEEEcCCCCe
Q 003405 155 GVP--DTVKSMSWCG-ENICIAIR--KGYMILNATNGAL 188 (823)
Q Consensus 155 ~~~--~~~~~l~~~~-~~i~v~~~--~~y~lidl~~~~~ 188 (823)
.++ ..|.++++.. ..+++++. ....++|.+ ++.
T Consensus 228 ~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~ 265 (333)
T 2dg1_A 228 YFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYP 265 (333)
T ss_dssp ECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCE
T ss_pred ecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCE
Confidence 222 3678888873 45888873 567888884 443
No 261
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=70.70 E-value=4.3 Score=33.96 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=39.8
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
...+.+.|+|++|+..++.....++ .....+...|..++..|+|++|...|.++
T Consensus 14 g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 14 AQEHLKHDNASRALALFEELVETDP-----DYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456789999999999876421111 12235667899999999999999999873
No 262
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=70.36 E-value=24 Score=35.82 Aligned_cols=153 Identities=12% Similarity=0.047 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCcccccccCChHHHHHHhhcCCCCChhhHHHhhhhhhh-cCccccccc
Q 003405 549 YTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLE-SCPTQTIEL 627 (823)
Q Consensus 549 ~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~~~~~~~~~~i~yL~~L~~~~~~li~~y~~wll~-~~p~~~~~i 627 (823)
+..++..+...|++++|+..+.+....+- .+.+.....+..+++ -+++.|+..
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P--------------------------~~~~a~~~la~~~~~~g~~~~A~~~ 173 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSN--------------------------QNGEIGLLLAETLIALNRSEDAEAV 173 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTT--------------------------SCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCC--------------------------cchhHHHHHHHHHHHCCCHHHHHHH
Confidence 34788889999999999999998754321 111111122222221 123334433
Q ss_pred ccc-CCCChHH-------HHHHHhhcCchhHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccc
Q 003405 628 FLS-GNIPADL-------VNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAY 699 (823)
Q Consensus 628 f~~-~~l~~~~-------Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~ 699 (823)
|.. ....|+. -+.+.........+..|+..+... ..+...|..|+.+|... +..
T Consensus 174 l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~----------------g~~ 235 (287)
T 3qou_A 174 LXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQV----------------GRN 235 (287)
T ss_dssp HTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT----------------TCH
T ss_pred HHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHc----------------ccH
Confidence 333 0111111 112222222334566777776642 35788999999999864 223
Q ss_pred hHHHHHHHHHhhhcCCCChHHHhccCCCCchhhHHHHHhhccccHHHHHHHHHHH
Q 003405 700 SPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHK 754 (823)
Q Consensus 700 ~~~r~kLl~fL~~s~~Yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~~AL~ilv~~ 754 (823)
.+....+...|+..+.++- .....-.+-+|..+|+.++|+..|-..
T Consensus 236 ~~A~~~l~~~l~~~p~~~~---------~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 236 EEALELLFGHLRXDLTAAD---------GQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHHHCTTGGG---------GHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccc---------chHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3456666666666554421 123445667788888888888776554
No 263
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=70.03 E-value=96 Score=31.24 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 305 ~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.....+...|++++|+..++.....+ ......+...|..++..|+|++|...|.++
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 97 (359)
T 3ieg_A 42 RRATVFLAMGKSKAALPDLTKVIALK-----MDFTAARLQRGHLLLKQGKLDEAEDDFKKV 97 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-----CCcchHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34455678899999999997642111 112356677899999999999999999873
No 264
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=69.95 E-value=5.3 Score=31.82 Aligned_cols=54 Identities=19% Similarity=0.342 Sum_probs=39.3
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
...+...|++++|+..++.....+. ....+....|..++..++|++|...|.++
T Consensus 16 a~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 16 GNAYYKQGDYDEAIEYYQKALELDP-----NNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3456788999999999876411110 12345667899999999999999999873
No 265
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=69.86 E-value=1e+02 Score=31.41 Aligned_cols=140 Identities=9% Similarity=0.084 Sum_probs=75.3
Q ss_pred cEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccce-eeeeecCCCCCCeeEEEEec-ccCceeeE
Q 003405 18 KIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYE-LERTISGFSKKPILSMEVLA-SRQLLLSL 93 (823)
Q Consensus 18 ~I~ci~~~--~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~-l~~~~~~~~k~~I~qI~~~~-~~~~Ll~l 93 (823)
...+++.. +++|||++..+.+..++.... ..+ +.....+..-...+.|.+.+ +.++.++-
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g----------------~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d 144 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGG----------------HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTD 144 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCE----------------ECEEEESEETTEECSCEEEEEECTTTCCEEEEE
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCC----------------EEEEecccCCCCcccccceEEEecCCCEEEEEC
Confidence 46677766 579999977766777764311 011 11111111112456688887 66655543
Q ss_pred eC------------------c-EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEE--EcCeEEEEEEcCCC--ceeE
Q 003405 94 SE------------------S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFA--RQKRVCIFRHDGGR--GFVE 150 (823)
Q Consensus 94 ~d------------------~-l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~--~kkki~l~~~~~~~--~f~~ 150 (823)
.. + |..++..+-+...........+-++++++...+.|+ ..++|..|...+.. .+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~ 224 (322)
T 2fp8_A 145 VSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV 224 (322)
T ss_dssp SCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEE
T ss_pred CcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccce
Confidence 21 2 666665332211111222344567788776678777 34678777766321 1222
Q ss_pred eeeecCCCCceEEEecC-CeEEEEEcC
Q 003405 151 VKDFGVPDTVKSMSWCG-ENICIAIRK 176 (823)
Q Consensus 151 ~kei~~~~~~~~l~~~~-~~i~v~~~~ 176 (823)
..+ ++. |.+|++.. ..|+|+...
T Consensus 225 ~~~--~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 225 LVK--IPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp EEE--CSS-EEEEEECTTSCEEEEEEE
T ss_pred EEe--CCC-CCCeEECCCCCEEEEecC
Confidence 222 455 88998874 358888643
No 266
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=69.60 E-value=3.8 Score=36.07 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=38.1
Q ss_pred HHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 309 QLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 309 ~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.+.+.|+|++|+...+.....+ + ....++...|..++..|+|++|+..|.++
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~~~----p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIELD----P-SNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC----C-CCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 4678999999999987531111 1 12245666799999999999999999873
No 267
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=69.46 E-value=4.7 Score=33.29 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=41.3
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 304 GAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 304 ~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
......+...|++++|+..++.....+ .....+....|..++..|+|++|...|.++
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 66 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD-----PEESKYWLMKGKALYNLERYEEAVDCYNYV 66 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-----cCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344566788999999999987642110 012345667799999999999999999873
No 268
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=69.23 E-value=1.6e+02 Score=33.46 Aligned_cols=187 Identities=11% Similarity=0.066 Sum_probs=107.2
Q ss_pred ccCceeeEeC-c--EEEEeCCCCcccc--cccCCCCcEEEEe-e-CCCceEEEEEcCeE-----------------EEEE
Q 003405 86 SRQLLLSLSE-S--IAFHRLPNLETIA--VLTKAKGANVYSW-D-DRRGFLCFARQKRV-----------------CIFR 141 (823)
Q Consensus 86 ~~~~Ll~l~d-~--l~~~~L~~l~~~~--~i~~~kg~~~fa~-~-~~~~~l~V~~kkki-----------------~l~~ 141 (823)
....|.+... + |.+.++.+++... .++...+.+-+++ . ++.+.++++.+-.+ .+--
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 3455666432 3 9999999987544 5555667788886 4 66677777753222 1222
Q ss_pred EcCCCceeEeeeecCCCCceEEEec--CCeEEEEEcC---------------------------------------ceEE
Q 003405 142 HDGGRGFVEVKDFGVPDTVKSMSWC--GENICIAIRK---------------------------------------GYMI 180 (823)
Q Consensus 142 ~~~~~~f~~~kei~~~~~~~~l~~~--~~~i~v~~~~---------------------------------------~y~l 180 (823)
++.+ ..+....+.++..|..+... |..+++++.+ +..+
T Consensus 180 ID~~-t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDAD-KWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETT-TTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECC-CCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 3322 34455667776677777664 5667777643 2455
Q ss_pred EEcCC--CCe-eeccCCCCCCCCEEEEccCCeEEEEeC---CeEEEEcCCC-------ccccC----CceeecCCCcEEE
Q 003405 181 LNATN--GAL-SEVFPSGRIGPPLVVSLLSGELLLGKE---NIGVFVDQNG-------KLLQA----DRICWSEAPIAVI 243 (823)
Q Consensus 181 idl~~--~~~-~~L~~~~~~~~p~i~~~~~~EfLL~~~---~~gvfv~~~G-------~~~~~----~~i~w~~~P~~v~ 243 (823)
+|..+ ++. ...+|.+++ .-.+...+++.++++.+ +....++..- +...+ ..+.-...|.+++
T Consensus 259 ID~~~~~~~~~~~~Ipvg~~-PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a 337 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPIANN-PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA 337 (595)
T ss_dssp EECSGGGCCSSEEEEEEESS-CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred EeCcccCCceeEEEEecCCC-ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence 66665 333 334444432 12344557888888654 4555556542 11111 2333345688888
Q ss_pred EeC-CE--EEEEeCCeEEEEEccCC----------CceeEEEeeC
Q 003405 244 IQK-PY--AIALLPRRVEVRSLRVP----------YALIQTIVLQ 275 (823)
Q Consensus 244 ~~~-PY--ll~~~~~~ieV~~l~~~----------~~lvQ~i~l~ 275 (823)
|.. .+ +..+.++.|.++++. . ..++++++..
T Consensus 338 F~~dG~aY~t~~ldsqV~kwdi~-~a~~~~~g~~~~~vi~kidV~ 381 (595)
T 1fwx_A 338 FDGRGNAYTSLFLDSQVVKWNIE-DAIRAYAGEKVDPIKDKLDVH 381 (595)
T ss_dssp ECTTSEEEEEETTTTEEEEEEHH-HHHHHHHTCSCCCEEEEEECS
T ss_pred ECCCCeEEEEEecCCcEEEEEhh-HhhhhhcccccceeEEEeecc
Confidence 863 24 444456789999974 3 4678888764
No 269
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=69.18 E-value=7.3 Score=34.23 Aligned_cols=55 Identities=24% Similarity=0.173 Sum_probs=40.4
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
....+...|++++|+..++.....+ ......+...|..++..|+|++|+..|.++
T Consensus 53 ~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 53 RAACLTKLMEFQRALDDCDTCIRLD-----SKFIKGYIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhHHHhhccHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445678899999999987642111 122345677899999999999999999873
No 270
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=68.54 E-value=3.2 Score=36.29 Aligned_cols=58 Identities=5% Similarity=-0.056 Sum_probs=43.0
Q ss_pred hhHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 303 LGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 303 ~~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
+-.+...+++.|++++|+..++.....++ .-...+...|..++..|++++|+..|.++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 77 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP-----EREEAWRSLGLTQAENEKDGLAIIALNHA 77 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556788899999999999976421111 12345667799999999999999999873
No 271
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=68.41 E-value=3.4 Score=35.56 Aligned_cols=53 Identities=19% Similarity=0.326 Sum_probs=38.5
Q ss_pred HHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 308 VQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 308 ~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
..+...|+|++|+..++.....++ ....++...|..++..|+|++|+..|.++
T Consensus 35 ~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 35 STFRTLGEYRKAEAVLANGVKQFP-----NHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-----CchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345678999999999876421111 12346667899999999999999998873
No 272
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=68.29 E-value=1.1e+02 Score=31.26 Aligned_cols=116 Identities=9% Similarity=0.116 Sum_probs=66.2
Q ss_pred CCeeEEEEecccCceeeEeC-c-EEEEeCCCCc-ccccc----------cCCCCcEEEEeeCCCceEEEEE---cCeEEE
Q 003405 76 KPILSMEVLASRQLLLSLSE-S-IAFHRLPNLE-TIAVL----------TKAKGANVYSWDDRRGFLCFAR---QKRVCI 139 (823)
Q Consensus 76 ~~I~qI~~~~~~~~Ll~l~d-~-l~~~~L~~l~-~~~~i----------~~~kg~~~fa~~~~~~~l~V~~---kkki~l 139 (823)
.....|.+.++.++.++-++ + |..|+...-. .+..+ ........++++++.+.+.|+- ..+|.+
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~ 170 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ 170 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence 35778888888775544333 3 8888864321 12211 1223467788988667777764 355655
Q ss_pred EEEcCCCceeEeeeecC-----C---CCceEEEecC--CeEEEEEc--CceEEEEcCCCCeeecc
Q 003405 140 FRHDGGRGFVEVKDFGV-----P---DTVKSMSWCG--ENICIAIR--KGYMILNATNGALSEVF 192 (823)
Q Consensus 140 ~~~~~~~~f~~~kei~~-----~---~~~~~l~~~~--~~i~v~~~--~~y~lidl~~~~~~~L~ 192 (823)
|... +.....+..... + ..|.+|++.. +.|+|+.. ....++|..+|+....+
T Consensus 171 ~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~ 234 (329)
T 3fvz_A 171 FSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI 234 (329)
T ss_dssp ECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence 5522 321111111000 0 2488999973 67888876 34778888877655444
No 273
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=67.88 E-value=3.1 Score=38.26 Aligned_cols=56 Identities=14% Similarity=0.020 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 305 ~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.....++..|+|++|+..++.....+ .....++...|..++..|+|++|+..|.++
T Consensus 16 ~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 71 (164)
T 3sz7_A 16 SEGNAAMARKEYSKAIDLYTQALSIA-----PANPIYLSNRAAAYSASGQHEKAAEDAELA 71 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----CcCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34556678999999999987642111 012356777899999999999999999873
No 274
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=67.37 E-value=7.9 Score=35.06 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=39.4
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
....+...|+|++|+..++.....++ .-...+...|..++..|+|++|+..|.+
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVLDH-----YDSRFFLGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCc-----ccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34466789999999999876421111 1224456678999999999999999987
No 275
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=67.33 E-value=72 Score=37.37 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh
Q 003405 549 YTALLELYKSNARHREALKLLHELVE 574 (823)
Q Consensus 549 ~~~L~~ly~~~g~~~~AL~ll~~l~~ 574 (823)
|..|+.+|...|++++|++.+.+..+
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~ 37 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALE 37 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56789999999999999999988654
No 276
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=66.85 E-value=1.1e+02 Score=30.79 Aligned_cols=205 Identities=12% Similarity=0.092 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhcCChhhHHhhhcCCCcccHHHHHHHHHhcCcHHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCccccc
Q 003405 507 LDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHT 586 (823)
Q Consensus 507 vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~~~~~~~L~~~~~~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~~ 586 (823)
.+..+.++|+..++.+....-++..+ .... .-+..++.+|...|++++|++.+.++...... +
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~~---~~~~-------~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~-P------ 98 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPSS---APEL-------QAVRMFAEYLASHSRRDAIVAELDREMSRSVD-V------ 98 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTTS---CHHH-------HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCC-C------
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcccC---ChhH-------HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccC-C------
Confidence 56778899999987666555555421 1111 12446888999999999999999987643210 0
Q ss_pred ccCChHHHHHHhhcCCCCChhhHHHhhhhh-hhcCccccccccccCCCChH----HHHHHHhhcCchhHHHHHHHHhhcc
Q 003405 587 QKFNPESIIEYLKPLCGTDPMLVLEFSMLV-LESCPTQTIELFLSGNIPAD----LVNSYLKQYSPSMQGRYLELMLAMN 661 (823)
Q Consensus 587 ~~~~~~~~i~yL~~L~~~~~~li~~y~~wl-l~~~p~~~~~if~~~~l~~~----~Vl~~L~~~~~~~~~~YLE~li~~~ 661 (823)
++......-+..+ -.-+.+.|++.|.. +-.++ .+.-++.....+.+..+++.++...
T Consensus 99 -----------------~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 99 -----------------TNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp -----------------SCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----------------CCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 0111111111111 11233344444444 11111 1111222234677888889887642
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccchHHHHHHHHHhhhcCCCChHHHhccCCCC-chhhHHHHHhhc
Q 003405 662 ENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPAD-ALYEERAILLGK 740 (823)
Q Consensus 662 ~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kLl~fL~~s~~Yd~~~~L~~~~~~-~l~~e~~~Ll~k 740 (823)
+. .....++..|+...... +...+...-+.. ++...|.+ .++..++..+.+
T Consensus 161 -p~---~~~~~l~~a~~~l~~~~------------~~~~eA~~~~~~------------~l~~~p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 161 -ED---ATLTQLATAWVSLAAGG------------EKLQDAYYIFQE------------MADKCSPTLLLLNGQAACHMA 212 (291)
T ss_dssp -TT---CHHHHHHHHHHHHHHCT------------THHHHHHHHHHH------------HHHHSCCCHHHHHHHHHHHHH
T ss_pred -cC---cHHHHHHHHHHHHHhCc------------hHHHHHHHHHHH------------HHHhCCCcHHHHHHHHHHHHH
Confidence 21 23344444444432110 011112222222 34445554 466788999999
Q ss_pred cccHHHHHHHHHHHh--CCCchhHHHHHHHHhcCCC
Q 003405 741 MNQHELALSLYVHKV--FLINQPVFLLIRRMAMDIK 774 (823)
Q Consensus 741 lg~h~~AL~ilv~~L--~D~~~a~~~~l~~~y~~~~ 774 (823)
+|++++|...+-.-| +--++..+.-+...|...+
T Consensus 213 ~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 999999999988644 3334556666666666543
No 277
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=66.68 E-value=1.1e+02 Score=30.68 Aligned_cols=162 Identities=10% Similarity=0.042 Sum_probs=89.1
Q ss_pred CCcEEEEEEeC-CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeee-cCCCCCCeeEEEEecccCceeeE
Q 003405 16 SPKIDAVASYG-LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTI-SGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 16 ~~~I~ci~~~~-~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~-~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
+..+.|++... +++++++.+| |+.|+.... .+...... .......++.+.+.++.++.+.-
T Consensus 53 ~~~~~~i~~~~dG~l~v~~~~~-l~~~d~~~g----------------~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~ 115 (297)
T 3g4e_A 53 DAPVSSVALRQSGGYVATIGTK-FCALNWKEQ----------------SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGT 115 (297)
T ss_dssp SSCEEEEEEBTTSSEEEEETTE-EEEEETTTT----------------EEEEEEECCTTCSSEEEEEEEECTTSCEEEEE
T ss_pred CCceEEEEECCCCCEEEEECCe-EEEEECCCC----------------cEEEEEecCCCCCCCCCCCEEECCCCCEEEec
Confidence 45677877663 5699998655 677775421 11111111 01112357788888887755543
Q ss_pred e-----------CcEEEEeCCC-CcccccccCCCCcEEEEeeCCCceEEEEE--cCeEEEEEEc-CCCceeEeeee-cC-
Q 003405 94 S-----------ESIAFHRLPN-LETIAVLTKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHD-GGRGFVEVKDF-GV- 156 (823)
Q Consensus 94 ~-----------d~l~~~~L~~-l~~~~~i~~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~-~~~~f~~~kei-~~- 156 (823)
. ..-.+|.+.. -+...........+.++++++...+.|+. .++|..|.++ .+......+.+ .+
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~ 195 (297)
T 3g4e_A 116 MAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE 195 (297)
T ss_dssp EECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC
T ss_pred CCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC
Confidence 1 1124444431 11111112223446678887766677763 5678888874 22223221211 12
Q ss_pred --CCCceEEEec-CCeEEEEEcCc--eEEEEcCCCCeeeccCC
Q 003405 157 --PDTVKSMSWC-GENICIAIRKG--YMILNATNGALSEVFPS 194 (823)
Q Consensus 157 --~~~~~~l~~~-~~~i~v~~~~~--y~lidl~~~~~~~L~~~ 194 (823)
+..|.+|++. +..|+++...+ ...+|..+|+....++.
T Consensus 196 ~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 196 KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 3578899987 34788887643 78888888876555444
No 278
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=66.54 E-value=7 Score=33.47 Aligned_cols=58 Identities=10% Similarity=0.074 Sum_probs=42.5
Q ss_pred hhHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 303 LGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 303 ~~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
+......+...|++++|+..++.....+. ....+....|..++..++|++|...|.++
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a 76 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNP-----KDAKLYSNRAACYTKLLEFQLALKDCEEC 76 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCT-----TCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34455667889999999999976421111 12356677899999999999999999863
No 279
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=66.21 E-value=1.5e+02 Score=32.09 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=42.1
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhcCCCHH
Q 003405 304 GAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDIT 370 (823)
Q Consensus 304 ~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dP~ 370 (823)
......+...|++++|+..++.....++ .....+...|..++..|+|++|...|.....+|.
T Consensus 63 ~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 124 (537)
T 3fp2_A 63 SNISACYISTGDLEKVIEFTTKALEIKP-----DHSKALLRRASANESLGNFTDAMFDLSVLSLNGD 124 (537)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Confidence 3445566789999999999986421111 1234566778999999999999999976555553
No 280
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=65.95 E-value=6.2 Score=35.21 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=39.9
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
....++..|+|++|+..++.....++ .-...+...|..++..|+|++|+..|.+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDH-----YDARYFLGLGACRQSLGLYEQALQSYSY 77 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCC-----ccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34566789999999999976421111 1224566779999999999999999987
No 281
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=65.05 E-value=69 Score=33.24 Aligned_cols=94 Identities=12% Similarity=0.134 Sum_probs=48.7
Q ss_pred EEEEeCCCCcccccccCCCCcEEEEeeC-CCceEEEEEc-------CeEEEEEEcCCCceeEeeeecC-CCCceEEEec-
Q 003405 97 IAFHRLPNLETIAVLTKAKGANVYSWDD-RRGFLCFARQ-------KRVCIFRHDGGRGFVEVKDFGV-PDTVKSMSWC- 166 (823)
Q Consensus 97 l~~~~L~~l~~~~~i~~~kg~~~fa~~~-~~~~l~V~~k-------kki~l~~~~~~~~f~~~kei~~-~~~~~~l~~~- 166 (823)
|.++++.+-+..........+..+++++ +...++++.. .+|.++...++ ..+.+.+ .. ...+.+++|.
T Consensus 170 l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~-~~~~~~~~~~~~sp 247 (396)
T 3c5m_A 170 LIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS-NVRKIKE-HAEGESCTHEFWIP 247 (396)
T ss_dssp EEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC-CCEESSC-CCTTEEEEEEEECT
T ss_pred EEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC-ceeEeec-cCCCccccceEECC
Confidence 7788876543222122234456677777 4455655543 23444444322 2222211 11 1246677887
Q ss_pred -CCeEEEEEcC----c--eEEEEcCCCCeeecc
Q 003405 167 -GENICIAIRK----G--YMILNATNGALSEVF 192 (823)
Q Consensus 167 -~~~i~v~~~~----~--y~lidl~~~~~~~L~ 192 (823)
|..|+++... . ..++|+.+++...+.
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 280 (396)
T 3c5m_A 248 DGSAMAYVSYFKGQTDRVIYKANPETLENEEVM 280 (396)
T ss_dssp TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCEEEEEecCCCCccceEEEEECCCCCeEEee
Confidence 4556665431 2 778898888766554
No 282
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=64.49 E-value=1.4e+02 Score=31.26 Aligned_cols=172 Identities=13% Similarity=0.232 Sum_probs=93.9
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe----Cc-----E
Q 003405 27 LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS----ES-----I 97 (823)
Q Consensus 27 ~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~----d~-----l 97 (823)
+.|-+=|.+. ++||++++++.+ .++-..........|..-.+.++.+.+++++ ++ +
T Consensus 118 ~~L~lVT~ta-VyHWs~~~~s~P--------------~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~m 182 (365)
T 2xzh_A 118 NTVALVTDNA-VYHWSMEGESQP--------------VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 182 (365)
T ss_dssp SEEEEEESSE-EEEEESSTTCCC--------------EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEcCCc-EEEEcccCCCCC--------------ceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeE
Confidence 5666666665 788998763321 1111111123344566666666666655553 22 4
Q ss_pred EEEeCCCCcccccccCCCCcEEEEe---e--CCCc-eEEEEEc----CeEEEEEEcCC----Cce-eEeeeecCC-----
Q 003405 98 AFHRLPNLETIAVLTKAKGANVYSW---D--DRRG-FLCFARQ----KRVCIFRHDGG----RGF-VEVKDFGVP----- 157 (823)
Q Consensus 98 ~~~~L~~l~~~~~i~~~kg~~~fa~---~--~~~~-~l~V~~k----kki~l~~~~~~----~~f-~~~kei~~~----- 157 (823)
.+|....- +++.-+. .+-+|+- + .... .+|.+.| .||.|.+++.. ..| ++..|+.+|
T Consensus 183 QLYS~er~--~sQ~ieG-haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~ 259 (365)
T 2xzh_A 183 QLYSVDRK--VSQPIEG-HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN 259 (365)
T ss_dssp EEEETTTT--EEEEECC-SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTT
T ss_pred EEEeeccc--ccceeee-eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccC
Confidence 55543221 1111111 2233432 1 1122 3577766 58999998532 245 334566554
Q ss_pred CCceEEEecC--CeEEEEEcCce-EEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEEEe-C--CeE-EEEcCCCcc
Q 003405 158 DTVKSMSWCG--ENICIAIRKGY-MILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGK-E--NIG-VFVDQNGKL 227 (823)
Q Consensus 158 ~~~~~l~~~~--~~i~v~~~~~y-~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL~~-~--~~g-vfv~~~G~~ 227 (823)
|-|.+|.... +.|++-++.+| +++|+.||...- .-++..+.++++. + ..| +.||..|..
T Consensus 260 DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~-----------~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 260 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY-----------MNRISGETIFVTAPHEATAGIIGVNRKGQV 325 (365)
T ss_dssp CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE-----------EEECCSSCEEEEEEEGGGTEEEEEETTCEE
T ss_pred CceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEE-----------EeccCCCceEEecccCCCCcEEEEcCCCEE
Confidence 6888988874 57999999887 789999975422 2244555555532 1 234 457777764
No 283
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=64.45 E-value=1.2e+02 Score=31.01 Aligned_cols=98 Identities=13% Similarity=0.092 Sum_probs=57.4
Q ss_pred chhHHHHHHHHhhcccCCC-ChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccchHHHHHHHHHhhhcCCCChHHHhccC
Q 003405 647 PSMQGRYLELMLAMNENSI-SGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRL 725 (823)
Q Consensus 647 ~~~~~~YLE~li~~~~~~~-~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kLl~fL~~s~~Yd~~~~L~~~ 725 (823)
...+..+++..+... +.. ....+..++..|... +.......-+...++ .-
T Consensus 197 ~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~al~------------~~ 247 (368)
T 1fch_A 197 FLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLS----------------GEYDKAVDCFTAALS------------VR 247 (368)
T ss_dssp HHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHH------------HC
T ss_pred HHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHH------------hC
Confidence 456777888777643 221 577888888888753 011112222222222 22
Q ss_pred CCC-chhhHHHHHhhccccHHHHHHHHHHHh--CCCchhHHHHHHHHhcCC
Q 003405 726 PAD-ALYEERAILLGKMNQHELALSLYVHKV--FLINQPVFLLIRRMAMDI 773 (823)
Q Consensus 726 ~~~-~l~~e~~~Ll~klg~h~~AL~ilv~~L--~D~~~a~~~~l~~~y~~~ 773 (823)
+.+ ..+...+.++.++|++++|+..+-.-+ ..-....|..+...|...
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 322 345667778888999999988886543 333455677777777664
No 284
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=64.33 E-value=51 Score=31.33 Aligned_cols=44 Identities=11% Similarity=-0.115 Sum_probs=23.6
Q ss_pred hhhHHHHHhhccccHHHHHHHHHHHh--CCCchhHHHHHHHHhcCC
Q 003405 730 LYEERAILLGKMNQHELALSLYVHKV--FLINQPVFLLIRRMAMDI 773 (823)
Q Consensus 730 l~~e~~~Ll~klg~h~~AL~ilv~~L--~D~~~a~~~~l~~~y~~~ 773 (823)
.....+.++.+.|++++|+..+-.-+ ..-....|..+...|...
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 206 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK 206 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 33455556666666666666665432 222344555555555554
No 285
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=64.30 E-value=81 Score=29.80 Aligned_cols=159 Identities=13% Similarity=0.060 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCcccccccCChHHHHHHhhcCCCCChhhHHHhhhhhhhcCcccccccc
Q 003405 549 YTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELF 628 (823)
Q Consensus 549 ~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~~~~~~~~~~i~yL~~L~~~~~~li~~y~~wll~~~p~~~~~if 628 (823)
+..++..|...|++++|++.+.+.......+ ... ..........+ .+.+--.++..-.++.+|....- +
T Consensus 60 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~-----~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~-~ 128 (243)
T 2q7f_A 60 YINFANLLSSVNELERALAFYDKALELDSSA---ATA-----YYGAGNVYVVK--EMYKEAKDMFEKALRAGMENGDL-F 128 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHH-----HHHHHHHHHHT--TCHHHHHHHHHHHHHHTCCSHHH-H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc---hHH-----HHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCCHHH-H
Confidence 4467888899999999999998776432110 000 00111111111 13333333333344444332110 0
Q ss_pred ccCCCChHHHHHHHhhcCchhHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccchHHHHHHHH
Q 003405 629 LSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLS 708 (823)
Q Consensus 629 ~~~~l~~~~Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kLl~ 708 (823)
.....-++.....+.+..+++..+... ..+...+..++..|... +.......-+..
T Consensus 129 ------~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~----------------~~~~~A~~~~~~ 184 (243)
T 2q7f_A 129 ------YMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANE----------------GMLDEALSQFAA 184 (243)
T ss_dssp ------HHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH----------------TCCHHHHHHHHH
T ss_pred ------HHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHc----------------CCHHHHHHHHHH
Confidence 001111222234567788888877642 24567777788777654 111122333333
Q ss_pred HhhhcCCCChHHHhccCCCC-chhhHHHHHhhccccHHHHHHHHHHH
Q 003405 709 ALESISGYNPEVLLKRLPAD-ALYEERAILLGKMNQHELALSLYVHK 754 (823)
Q Consensus 709 fL~~s~~Yd~~~~L~~~~~~-~l~~e~~~Ll~klg~h~~AL~ilv~~ 754 (823)
.++. .+.+ ......+.+|.++|++++|+..+-.-
T Consensus 185 ~~~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 185 VTEQ------------DPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHH------------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHh------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3332 2222 34567788889999999999888653
No 286
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=63.89 E-value=3.3 Score=37.73 Aligned_cols=52 Identities=10% Similarity=0.024 Sum_probs=38.6
Q ss_pred HHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 309 QLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 309 ~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.+.+.|+|++|+..++.....++ .-...+...|..++..|+|++|+..|.++
T Consensus 40 ~y~~~~~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 40 LYYEAKEYDLAKKYICTYINVQE-----RDPKAHRFLGLLYELEENTDKAVECYRRS 91 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 44688999999999876421111 22356777899999999999999999873
No 287
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=63.42 E-value=1.3e+02 Score=30.43 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=35.8
Q ss_pred CCeeEEEEecccCceeeEeC----c---EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEE
Q 003405 76 KPILSMEVLASRQLLLSLSE----S---IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFAR 133 (823)
Q Consensus 76 ~~I~qI~~~~~~~~Ll~l~d----~---l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~ 133 (823)
..+..+...|..+.|+..++ + |.++++.+-+... +....++..++++++...|+++.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~~~~~~~~wspdg~~l~~~~ 122 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKK-ILEAKNIRSLEWNEDSRKLLIVG 122 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEE-EEEESEEEEEEECTTSSEEEEEE
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEE-EEcCCCccceeECCCCCEEEEEE
Confidence 35777888888887777763 2 7777776543221 21112277788888776777664
No 288
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=62.96 E-value=96 Score=28.68 Aligned_cols=179 Identities=14% Similarity=-0.020 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCcccccccCChHHHHHHhhcCCCCChhhHHHhhhhhhhcCcccccccc
Q 003405 549 YTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELF 628 (823)
Q Consensus 549 ~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~~~~~~~~~~i~yL~~L~~~~~~li~~y~~wll~~~p~~~~~if 628 (823)
+..++..|...|++++|++.+.+.......+ .... ...+.-|.. . .+.+--.++..-.++.+|....-.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~----~~l~~~~~~-~--~~~~~A~~~~~~a~~~~~~~~~~~- 79 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKN---ELAW----LVRAEIYQY-L--KVNDKAQESFRQALSIKPDSAEIN- 79 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHH----HHHHHHHHH-T--TCHHHHHHHHHHHHHHCTTCHHHH-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCccc---hHHH----HHHHHHHHH-c--CChHHHHHHHHHHHHhCCCChHHH-
Confidence 4567888888999999999888765432110 0000 001111111 1 133333333333344443321100
Q ss_pred ccCCCChHHHHHHHhh-cCchhHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccchHHHHHHH
Q 003405 629 LSGNIPADLVNSYLKQ-YSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLL 707 (823)
Q Consensus 629 ~~~~l~~~~Vl~~L~~-~~~~~~~~YLE~li~~~~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kLl 707 (823)
.....-+... ...+.+..+++.++...........+..++..|... +.......-+.
T Consensus 80 ------~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~A~~~~~ 137 (225)
T 2vq2_A 80 ------NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ----------------GQFGLAEAYLK 137 (225)
T ss_dssp ------HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT----------------TCHHHHHHHHH
T ss_pred ------HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc----------------CCHHHHHHHHH
Confidence 0011112222 335567778888775111122346667777777643 01111222222
Q ss_pred HHhhhcCCCChHHHhccCCCC-chhhHHHHHhhccccHHHHHHHHHHHh--CC-CchhHHHHHHHHhcC
Q 003405 708 SALESISGYNPEVLLKRLPAD-ALYEERAILLGKMNQHELALSLYVHKV--FL-INQPVFLLIRRMAMD 772 (823)
Q Consensus 708 ~fL~~s~~Yd~~~~L~~~~~~-~l~~e~~~Ll~klg~h~~AL~ilv~~L--~D-~~~a~~~~l~~~y~~ 772 (823)
..++. .+.+ ......+.++.++|++++|+..+-.-+ .. .....+..+..+|..
T Consensus 138 ~~~~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (225)
T 2vq2_A 138 RSLAA------------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKA 194 (225)
T ss_dssp HHHHH------------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHh------------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 22222 2222 345677888899999999998876533 22 334455555555554
No 289
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=62.54 E-value=1.8e+02 Score=31.79 Aligned_cols=132 Identities=8% Similarity=0.085 Sum_probs=75.5
Q ss_pred CCEEEE-EeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeec------CCCCCCeeEEEEecccCceeeEe-C--
Q 003405 26 GLKILL-GCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTIS------GFSKKPILSMEVLASRQLLLSLS-E-- 95 (823)
Q Consensus 26 ~~~L~v-GT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~------~~~k~~I~qI~~~~~~~~Ll~l~-d-- 95 (823)
+++||+ |-.++.|++++...+.. ..++.+.+. ..+.+.=..+.+.|.. ++++.. +
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~--------------~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~ 159 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPR--------------EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEE 159 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTT--------------SCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETT
T ss_pred CCEEEEccCCCCeEEEEECCCCCC--------------CceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcC
Confidence 568888 57788899998653221 123333331 0111122346677776 555443 2
Q ss_pred -----cEEEEeCCCCcccccccCCCCcE----EEEeeCCCceEEEEE--------------------cCeEEEEEEcCCC
Q 003405 96 -----SIAFHRLPNLETIAVLTKAKGAN----VYSWDDRRGFLCFAR--------------------QKRVCIFRHDGGR 146 (823)
Q Consensus 96 -----~l~~~~L~~l~~~~~i~~~kg~~----~fa~~~~~~~l~V~~--------------------kkki~l~~~~~~~ 146 (823)
++.+++..+++.+.+++.-.+.. .|.++++...+++.. .++|.+|.+..+
T Consensus 160 g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~- 238 (462)
T 2ece_A 160 GEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR- 238 (462)
T ss_dssp SCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-
T ss_pred CCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-
Confidence 28999998888776654332222 244566555444442 578999998843
Q ss_pred ceeEeeeecCC---CCceEEEe--c--CCeEEEEEc
Q 003405 147 GFVEVKDFGVP---DTVKSMSW--C--GENICIAIR 175 (823)
Q Consensus 147 ~f~~~kei~~~---~~~~~l~~--~--~~~i~v~~~ 175 (823)
+..+.+.++ ..|+.|.| . |...+|++.
T Consensus 239 --k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e 272 (462)
T 2ece_A 239 --KRIHSLTLGEENRMALELRPLHDPTKLMGFINMV 272 (462)
T ss_dssp --EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEE
T ss_pred --cEeeEEecCCCCCccceeEeeECCCCCEEEEEEe
Confidence 445567775 36777766 3 456666654
No 290
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=61.98 E-value=7.7 Score=32.20 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=41.1
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 304 GAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 304 ~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
......+...|++++|+..++.....++ ....+....|..++..|+|++|...|.+
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 63 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDP-----HNHVLYSNRSAAYAKKGDYQKAYEDGCK 63 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3456677889999999999876421110 1234566778899999999999999886
No 291
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=61.92 E-value=1.3e+02 Score=30.99 Aligned_cols=94 Identities=13% Similarity=0.188 Sum_probs=47.6
Q ss_pred EEEEeCCCCcccccccCCCCcEEEEeeC-CCceEEEEEcC-------eEEEEEEcCCCceeEeeeecCCCCceEEEec--
Q 003405 97 IAFHRLPNLETIAVLTKAKGANVYSWDD-RRGFLCFARQK-------RVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC-- 166 (823)
Q Consensus 97 l~~~~L~~l~~~~~i~~~kg~~~fa~~~-~~~~l~V~~kk-------ki~l~~~~~~~~f~~~kei~~~~~~~~l~~~-- 166 (823)
|.++++.+-+..........+..+++++ +...|+.+... +|.++...++ ..+.+..-.-...+.+..|.
T Consensus 170 l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~spd 248 (388)
T 3pe7_A 170 LMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-NMRKVKTHAEGESCTHEFWVPD 248 (388)
T ss_dssp EEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-CCEESCCCCTTEEEEEEEECTT
T ss_pred EEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-ceEEeeeCCCCcccccceECCC
Confidence 7777776543221112223456777888 66666655432 3444443322 22222111101235567786
Q ss_pred CCeEEEE-EcC---c--eEEEEcCCCCeeec
Q 003405 167 GENICIA-IRK---G--YMILNATNGALSEV 191 (823)
Q Consensus 167 ~~~i~v~-~~~---~--y~lidl~~~~~~~L 191 (823)
|..|+++ ... . ..++|+.+|+...+
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l 279 (388)
T 3pe7_A 249 GSALVYVSYLKGSPDRFIYSADPETLENRQL 279 (388)
T ss_dssp SSCEEEEEEETTCCCEEEEEECTTTCCEEEE
T ss_pred CCEEEEEecCCCCCcceEEEEecCCCceEEE
Confidence 5556554 332 2 77888888876544
No 292
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=61.82 E-value=69 Score=28.50 Aligned_cols=158 Identities=16% Similarity=0.093 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCcccccccCChHHHHHHhhcCCCCChhhHHHhhhhhhhcCcccccccc
Q 003405 549 YTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELF 628 (823)
Q Consensus 549 ~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~~~~~~~~~~i~yL~~L~~~~~~li~~y~~wll~~~p~~~~~if 628 (823)
+..++..|...|++++|++.+.+....... ..... ...+.-|.. ..+.+--.++..-.++.+|....-.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~----~~~~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~- 79 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAF---DVDVA----LHLGIAYVK---TGAVDRGTELLERSLADAPDNVKVA- 79 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSC---CHHHH----HHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHH-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc---ChHHH----HHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCHHHH-
Confidence 456788888899999999988765422110 00000 001111111 1133333333333344333221000
Q ss_pred ccCCCChHHHHHHHhhcCchhHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccchHHHHHHHH
Q 003405 629 LSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLS 708 (823)
Q Consensus 629 ~~~~l~~~~Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kLl~ 708 (823)
.....-+......+.+..+++.++... ......+..++..|... +.......-+..
T Consensus 80 ------~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~----------------~~~~~A~~~~~~ 135 (186)
T 3as5_A 80 ------TVLGLTYVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNL----------------GRFDEAIDSFKI 135 (186)
T ss_dssp ------HHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHH
T ss_pred ------HHHHHHHHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHc----------------CcHHHHHHHHHH
Confidence 000111222234566778888877642 24567777777777653 011112222333
Q ss_pred HhhhcCCCChHHHhccCCCC-chhhHHHHHhhccccHHHHHHHHHH
Q 003405 709 ALESISGYNPEVLLKRLPAD-ALYEERAILLGKMNQHELALSLYVH 753 (823)
Q Consensus 709 fL~~s~~Yd~~~~L~~~~~~-~l~~e~~~Ll~klg~h~~AL~ilv~ 753 (823)
.++. .+.+ ......+.++.++|++++|+..+-.
T Consensus 136 ~~~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 136 ALGL------------RPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhc------------CccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2222 2332 3456778888999999999987754
No 293
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=61.64 E-value=63 Score=34.33 Aligned_cols=166 Identities=13% Similarity=0.064 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCcccccccCChHHHHHHhhcCCCCChhhHHHhhhhhhhcCcccc---c
Q 003405 549 YTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQT---I 625 (823)
Q Consensus 549 ~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~~~~~~~~~~i~yL~~L~~~~~~li~~y~~wll~~~p~~~---~ 625 (823)
+..++..|...|++++|++.+.+.....-.. ... .......+..++ +.+--.++..-.++.+|... .
T Consensus 63 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~-----~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~ 132 (450)
T 2y4t_A 63 YYRRATVFLAMGKSKAALPDLTKVIQLKMDF---TAA-----RLQRGHLLLKQG--KLDEAEDDFKKVLKSNPSENEEKE 132 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHH-----HHHHHHHHHHTT--CHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---HHH-----HHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCChhhHH
Confidence 5568889999999999999999876433110 000 001111111112 33333333333444444322 0
Q ss_pred cc--cccC---CCChHHHHHHHhhcCchhHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccch
Q 003405 626 EL--FLSG---NIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYS 700 (823)
Q Consensus 626 ~i--f~~~---~l~~~~Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~ 700 (823)
.. +..- .-.......+........+..+++.++... ..+...+..++..|... .+ ..
T Consensus 133 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~-------------g~---~~ 194 (450)
T 2y4t_A 133 AQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELRELRAECFIKE-------------GE---PR 194 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT-------------TC---GG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHC-------------CC---HH
Confidence 00 0000 000001112333334566777888877542 34677888888888753 01 11
Q ss_pred HHHHHHHHHhhhcCCCChHHHhccCCCC-chhhHHHHHhhccccHHHHHHHHHHH
Q 003405 701 PTRKKLLSALESISGYNPEVLLKRLPAD-ALYEERAILLGKMNQHELALSLYVHK 754 (823)
Q Consensus 701 ~~r~kLl~fL~~s~~Yd~~~~L~~~~~~-~l~~e~~~Ll~klg~h~~AL~ilv~~ 754 (823)
....-+...++.. +.+ ..+...+.+|.+.|++++|+..+-.-
T Consensus 195 ~A~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 195 KAISDLKAASKLK------------NDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp GGHHHHHHHHHHH------------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1223333333322 222 34556777888889998888877543
No 294
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=61.56 E-value=1.5e+02 Score=34.36 Aligned_cols=108 Identities=10% Similarity=0.118 Sum_probs=61.6
Q ss_pred cEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCC--eeEEEEecccCceeeE
Q 003405 18 KIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKP--ILSMEVLASRQLLLSL 93 (823)
Q Consensus 18 ~I~ci~~~~--~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~--I~qI~~~~~~~~Ll~l 93 (823)
+..++.... +.++.+ +|.|.+|++..... ..+. ....+.... ...+..-|+.+.++.-
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~---------------~~~~-~~~~~~~~~~~~~~~~~Spdg~~l~~~ 79 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS---------------SVFL-ENSTFDEFGHSINDYSISPDGQFILLE 79 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCE---------------EEEE-CTTTTTTCCSCCCEEEECTTSSEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCce---------------EEEE-echhhhhhcccccceEECCCCCEEEEE
Confidence 444555543 344444 99999998764321 0111 101111112 2347778888877776
Q ss_pred eC----------c-EEEEeCCCCcccccccC-CCCcEEEEeeCCCceEEEEEcCeEEEEEEcC
Q 003405 94 SE----------S-IAFHRLPNLETIAVLTK-AKGANVYSWDDRRGFLCFARQKRVCIFRHDG 144 (823)
Q Consensus 94 ~d----------~-l~~~~L~~l~~~~~i~~-~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~ 144 (823)
++ + +.+|++.+-+.. .+.. ...+...+++++...|+.+.++.|.++....
T Consensus 80 ~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~ 141 (740)
T 4a5s_A 80 YNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPN 141 (740)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTT
T ss_pred ECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEECCeEEEEECCC
Confidence 65 2 568888664422 2222 2346778889888788888888766655443
No 295
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=61.49 E-value=1.1e+02 Score=31.82 Aligned_cols=84 Identities=8% Similarity=0.097 Sum_probs=59.5
Q ss_pred EEEecccCceeeEeC-------------cEEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCc
Q 003405 81 MEVLASRQLLLSLSE-------------SIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRG 147 (823)
Q Consensus 81 I~~~~~~~~Ll~l~d-------------~l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~ 147 (823)
+.+-+..+.+.+... .|.+|++.+.+.+.+++.-. +..++++++..+++++..+.|.+|....+ .
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~~~v~v~D~~t~-~ 336 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDGGNVNVYDISQP-E 336 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECSSCEEEEECSSS-S
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCCCeEEEEECCCC-c
Confidence 555666677666532 38999998888776665545 88899998877888887678888866533 2
Q ss_pred eeEeeee-cCCCCceEEEec
Q 003405 148 FVEVKDF-GVPDTVKSMSWC 166 (823)
Q Consensus 148 f~~~kei-~~~~~~~~l~~~ 166 (823)
.+.++.+ .....|..+++.
T Consensus 337 l~~~~~i~~~G~~P~~~~~~ 356 (361)
T 2oiz_A 337 PKLLRTIEGAAEASLQVQFH 356 (361)
T ss_dssp CEEEEEETTSCSSEEEEEEC
T ss_pred ceeeEEeccCCCCcEEEEec
Confidence 3566665 567788888775
No 296
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=61.32 E-value=8.8 Score=33.04 Aligned_cols=56 Identities=25% Similarity=0.223 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 305 ~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.....+...|+|++|+..++.....++ .....+...|..++..|+|++|...|.++
T Consensus 43 ~~a~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 43 NRAAALAKLMSFPEAIADCNKAIEKDP-----NFVRAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 344556788999999999876421111 12345677899999999999999999873
No 297
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=61.28 E-value=11 Score=34.85 Aligned_cols=57 Identities=26% Similarity=0.367 Sum_probs=44.0
Q ss_pred hhHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 303 LGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 303 ~~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
.-.+...+++.|++++|+..++.....++ .-...+...|..++..|++++|...|.+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~la~~~~~~g~~~~A~~~~~~ 65 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-----SRGDVKLAKADCLLETKQFELAQELLAT 65 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-----TSHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34566788999999999999987632211 2235677789999999999999999876
No 298
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=61.00 E-value=4.6 Score=34.64 Aligned_cols=58 Identities=10% Similarity=0.121 Sum_probs=36.9
Q ss_pred cCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhcCCCHHHHHHhCCCC
Q 003405 313 SGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSI 379 (823)
Q Consensus 313 ~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dP~~vi~Lfp~l 379 (823)
.|++++|+..++....... .+.....++...|..++..|+|++|...|.+ ++.++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~-------al~~~p~~ 60 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGL--QGKDLAECYLGLGSTFRTLGEYRKAEAVLAN-------GVKQFPNH 60 (117)
T ss_dssp ----CCCHHHHHHHHSSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------HHHHCTTC
T ss_pred CCcHHHHHHHHHHHHHcCC--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHH-------HHHhCCCc
Confidence 5778888888876421100 0012345677789999999999999999986 45666655
No 299
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=60.89 E-value=5.4 Score=38.44 Aligned_cols=60 Identities=8% Similarity=0.103 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCcchHhhhh-----------cHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAA-----------KEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 305 ~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~-----------~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
.+...+++.|+|++|+..++.....++..... ....+....|..++..|+|++|+..|.+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 79 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45567789999999999997642111110000 0012233379999999999999999987
No 300
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.84 E-value=11 Score=32.85 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=42.6
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 304 GAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 304 ~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
......++..|+|++|+.+++.....+.. ......+....|..++..++|++|...|.+
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 90 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALGLDAT--PQDQAVLHRNRAACHLKLEDYDKAETEASK 90 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHTSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccc--chHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 34566678899999999999864211110 011245677789999999999999999986
No 301
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=59.85 E-value=16 Score=41.40 Aligned_cols=86 Identities=22% Similarity=0.302 Sum_probs=50.9
Q ss_pred CCcccccccccCCCCcEEEEEEeC--C--EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCC-CCC
Q 003405 3 HNAFDSLELISNCSPKIDAVASYG--L--KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFS-KKP 77 (823)
Q Consensus 3 ~~af~~~~l~~~~~~~I~ci~~~~--~--~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~-k~~ 77 (823)
-.+....|++.......++|++.. + -+|+||++|.|+...+..... ...+...+.-+. ..|
T Consensus 386 ~~p~~~~pl~~~~~~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~--------------~~~~~e~~~v~~~~~p 451 (539)
T 3al9_A 386 STPVEGLTLYTTSRDRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPH--------------GGVQYEMVSVFKDGSP 451 (539)
T ss_dssp SSCEECEEEEEESSSCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTT--------------EEEEEEEEECCTTCCC
T ss_pred cccccccceEEecccceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCc--------------cceeEEEEEeecCCCc
Confidence 344455555544344677766653 3 589999999999876543211 101112222232 468
Q ss_pred ee-EEEEecccCceeeEeCc-EEEEeC
Q 003405 78 IL-SMEVLASRQLLLSLSES-IAFHRL 102 (823)
Q Consensus 78 I~-qI~~~~~~~~Ll~l~d~-l~~~~L 102 (823)
|. .|.+.+..+.|.+.++. |.-..+
T Consensus 452 v~~~l~~~~~~~~Lyv~s~~~V~kvpl 478 (539)
T 3al9_A 452 ILRDMAFSINQLYLYVMSERQVTRVPV 478 (539)
T ss_dssp CCSCCEECTTSSEEEEECSSEEEEEES
T ss_pred cccceEEccCCCeEEEEeccccceeeh
Confidence 86 78888888888888873 544443
No 302
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=59.80 E-value=1.2e+02 Score=28.74 Aligned_cols=181 Identities=15% Similarity=-0.024 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCcccccccCChHHHHHHhhcCCCCChhhHHHhhhhhhhcCcccccccc
Q 003405 549 YTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELF 628 (823)
Q Consensus 549 ~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~~~~~~~~~~i~yL~~L~~~~~~li~~y~~wll~~~p~~~~~if 628 (823)
+..++..|...|++++|+..+.+....+-. .++.. ...+.-|.+ ++ +.+--.++..-.++.+|....-.+
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~----~~lg~~~~~-~g--~~~~A~~~~~~al~~~P~~~~a~~ 77 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQ---DPEAL----YWLARTQLK-LG--LVNPALENGKTLVARTPRYLGGYM 77 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSS---CHHHH----HHHHHHHHH-TT--CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH----HHHHHHHHH-cC--CHHHHHHHHHHHHHhCCCcHHHHH
Confidence 557888999999999999999987643211 11100 001111111 11 222223333334444444321100
Q ss_pred ccCCCChHHHHHHH---------hhcCchhHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccc
Q 003405 629 LSGNIPADLVNSYL---------KQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAY 699 (823)
Q Consensus 629 ~~~~l~~~~Vl~~L---------~~~~~~~~~~YLE~li~~~~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~ 699 (823)
. ...+...+ .....+.++.+++..+..+ + .++..+..++..|... +..
T Consensus 78 ~-----lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P-~~~~~~~~lg~~~~~~----------------g~~ 134 (217)
T 2pl2_A 78 V-----LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-P-RYAPLHLQRGLVYALL----------------GER 134 (217)
T ss_dssp H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHT----------------TCH
T ss_pred H-----HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-c-ccHHHHHHHHHHHHHc----------------CCh
Confidence 0 01111111 0012455677778777642 3 4677888888887753 011
Q ss_pred hHHHHHHHHHhhhcCCCChHHHhccCCCCchhhHHHHHhhccccHHHHHHHHHHHhC-C-CchhHHHHHHHHhcCCC
Q 003405 700 SPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKVF-L-INQPVFLLIRRMAMDIK 774 (823)
Q Consensus 700 ~~~r~kLl~fL~~s~~Yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~~AL~ilv~~L~-D-~~~a~~~~l~~~y~~~~ 774 (823)
.+...-+.+-++.. .....+...+.+|.++|++++|+..+-.-+. + -+..++..+...|...+
T Consensus 135 ~~A~~~~~~al~~~------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 135 DKAEASLKQALALE------------DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhcc------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 11222222222222 1113455788889999999999988876542 2 24567777777777754
No 303
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=59.72 E-value=9.5 Score=33.09 Aligned_cols=56 Identities=14% Similarity=-0.008 Sum_probs=41.5
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 304 GAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 304 ~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
......++..|+|++|+..++.....+ .....++...|..++..|+|++|...|.+
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRN-----PLVAVYYTNRALCYLKMQQPEQALADCRR 68 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhC-----cCcHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 344566788999999999987642111 11235677789999999999999999986
No 304
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=58.98 E-value=2.1e+02 Score=31.31 Aligned_cols=174 Identities=13% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe----Cc-----
Q 003405 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS----ES----- 96 (823)
Q Consensus 26 ~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~----d~----- 96 (823)
.+.|-+=|.+. ++||++++++. +.++-..........|..-.+.++.+.+++++ ++
T Consensus 116 ~~~l~lVT~ta-VyHWsi~~~s~--------------P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~ 180 (494)
T 1bpo_A 116 LNTVALVTDNA-VYHWSMEGESQ--------------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 180 (494)
T ss_dssp TTEEEEECSSE-EEEEESSSSCC--------------CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEE
T ss_pred CCeEEEEcCCe-eEEecccCCCC--------------chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccce
Q ss_pred EEEEeCCCCcccccccCCCCcEEEEeeCCC-----ceEEEEEc----CeEEEEEE----cCCCce-eEeeeecCC-----
Q 003405 97 IAFHRLPNLETIAVLTKAKGANVYSWDDRR-----GFLCFARQ----KRVCIFRH----DGGRGF-VEVKDFGVP----- 157 (823)
Q Consensus 97 l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~-----~~l~V~~k----kki~l~~~----~~~~~f-~~~kei~~~----- 157 (823)
+.+|.... .+++.-....+.+-.+..+. ..+|.+.| .|+.|.++ .++..| ++..|+.+|
T Consensus 181 mQLYS~er--~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~ 258 (494)
T 1bpo_A 181 MQLYSVDR--KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN 258 (494)
T ss_dssp EEEEESTT--CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTT
T ss_pred EEEeeccc--cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCccccc
Q ss_pred CCceEEEec--CCeEEEEEcCce-EEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEEEeC----CeEEEEcCCCcc
Q 003405 158 DTVKSMSWC--GENICIAIRKGY-MILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKE----NIGVFVDQNGKL 227 (823)
Q Consensus 158 ~~~~~l~~~--~~~i~v~~~~~y-~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL~~~----~~gvfv~~~G~~ 227 (823)
|-|.+|... -+.|++.++.+| +++|+.||.. -..-++..+.++++.. +-.+.||..|..
T Consensus 259 DFPvamqvs~kygviyviTK~G~i~lyDleTgt~-----------i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 259 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC-----------IYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE-----------EEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred CceeEEEecccCCEEEEEecCceEEEEeccccee-----------eeeecccCCceEEecccCCCCcEEEEccCceE
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=58.97 E-value=81 Score=36.74 Aligned_cols=200 Identities=10% Similarity=0.043 Sum_probs=100.2
Q ss_pred cEEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEE--EcCeEEEEEEcCCCceeEeee-ecC-CCCceEEEe--cCCe
Q 003405 96 SIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFA--RQKRVCIFRHDGGRGFVEVKD-FGV-PDTVKSMSW--CGEN 169 (823)
Q Consensus 96 ~l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~--~kkki~l~~~~~~~~f~~~ke-i~~-~~~~~~l~~--~~~~ 169 (823)
.|...++...+....+...+++..++++...+.|.++ ..++|..+...+......... +.. -..|.+|++ .++.
T Consensus 387 ~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~ 466 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN 466 (699)
T ss_dssp C-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSB
T ss_pred ceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCc
Confidence 4777777654433334455667778888777788877 445666666553100000111 110 124566665 4778
Q ss_pred EEEEEc--CceEEEEcCCCCeeeccCCCCCCCCEEEEcc-CCeEEEEeC----CeEEEEcCCCccccCCceee--cCCCc
Q 003405 170 ICIAIR--KGYMILNATNGALSEVFPSGRIGPPLVVSLL-SGELLLGKE----NIGVFVDQNGKLLQADRICW--SEAPI 240 (823)
Q Consensus 170 i~v~~~--~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~-~~EfLL~~~----~~gvfv~~~G~~~~~~~i~w--~~~P~ 240 (823)
|+|+.. ....++++.++....++..+- ..|.-+.+. .+..|.+.+ .....++.+|... ..+.- -..|.
T Consensus 467 LY~tD~~~~~I~v~d~dg~~~~~l~~~~~-~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~~l~~~~l~~Pn 543 (699)
T 1n7d_A 467 IYWTDSVLGTVSVADTKGVKRKTLFREQG-SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVTENIQWPN 543 (699)
T ss_dssp CEECCTTTSCEEEEBSSSCCEEEECCCSS-CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--CEESCSSCSSCC
T ss_pred EEEEeccCCeEEEEecCCCceEEEEeCCC-CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--eEEEeCCCCCcc
Confidence 888865 467788887766666655432 235444442 334444433 2233345666432 11111 12477
Q ss_pred EEEEe--CCEEEEEeC--CeEEEEEccCCCceeEEEee-----CCcccccccCCeEEEec--cceEEEeec
Q 003405 241 AVIIQ--KPYAIALLP--RRVEVRSLRVPYALIQTIVL-----QNVRHLIPSSNAVVVAL--ENSIFGLFP 300 (823)
Q Consensus 241 ~v~~~--~PYll~~~~--~~ieV~~l~~~~~lvQ~i~l-----~~~~~l~~~~~~v~v~s--~~~I~~l~~ 300 (823)
.+++. .-.|+.... +.|.++++. +.-.+++.- +.+.-|...++.+|++. .+.|+++.+
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR 612 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSS--SSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEET
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccC--CCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEc
Confidence 77776 345555544 467777763 333333321 11112222345566553 456777654
No 306
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=58.90 E-value=11 Score=34.44 Aligned_cols=52 Identities=12% Similarity=0.024 Sum_probs=38.2
Q ss_pred HHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 308 VQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 308 ~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
..+...|+|++|+..++....-++ .-...+...|..++..|+|++|...|.+
T Consensus 78 ~~~~~~g~~~~Ai~~~~~al~l~P-----~~~~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 78 AIYQIKEQFQQAADLYAVAFALGK-----NDYTPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSS-----SCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHhhCC-----CCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455688999999999876311110 1123566779999999999999999987
No 307
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=58.86 E-value=1.1e+02 Score=30.51 Aligned_cols=99 Identities=13% Similarity=0.103 Sum_probs=57.5
Q ss_pred CchhHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccchHHHHHHHHHhhhcCCCChHHHhccC
Q 003405 646 SPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRL 725 (823)
Q Consensus 646 ~~~~~~~YLE~li~~~~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kLl~fL~~s~~Yd~~~~L~~~ 725 (823)
..+.+..+++..+... ..++..+..++..|... +...+...-+...++ ..
T Consensus 187 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~----------------~~~~~A~~~~~~a~~------------~~ 236 (327)
T 3cv0_A 187 NYDSAAANLRRAVELR--PDDAQLWNKLGATLANG----------------NRPQEALDAYNRALD------------IN 236 (327)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHH------------HC
T ss_pred cHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHH------------cC
Confidence 3556777888776542 24567777777777753 011112222222222 22
Q ss_pred CCC-chhhHHHHHhhccccHHHHHHHHHHHh--CCC------------chhHHHHHHHHhcCCC
Q 003405 726 PAD-ALYEERAILLGKMNQHELALSLYVHKV--FLI------------NQPVFLLIRRMAMDIK 774 (823)
Q Consensus 726 ~~~-~l~~e~~~Ll~klg~h~~AL~ilv~~L--~D~------------~~a~~~~l~~~y~~~~ 774 (823)
+.+ ..+...+.++.++|++++|+..+-.-+ ..- ....|..+...|...+
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 322 345577888999999999998886432 221 3557777777776653
No 308
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=58.81 E-value=7.9 Score=33.96 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=40.9
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhh--hhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLR--AAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~--~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
-..+.+.|+|++|+..++.....+.... ......++...|..+...++|++|++.|.++
T Consensus 49 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 49 AAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456789999999998876321111100 0123456777899999999999999999874
No 309
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=58.73 E-value=1.9e+02 Score=30.62 Aligned_cols=209 Identities=10% Similarity=-0.010 Sum_probs=0.0
Q ss_pred CcEEEEEEe--CCEEEEEe-CCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 17 PKIDAVASY--GLKILLGC-SDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 17 ~~I~ci~~~--~~~L~vGT-~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
..+..++.. ++.||+.. ..|.|+.++.++.. ...+..........|.+.+..+.|.+.
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------------------~~~~~~~~~~~p~glavd~~~g~lY~~ 176 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-------------------VEEVVSTGLESPGGLAVDWVHDKLYWT 176 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-------------------EEEEECSSCSCCCCEEEETTTTEEEEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-------------------cEEEEeCCCCCccEEEEEeCCCeEEEE
Q ss_pred eCc---EEEEeCCCCcccccccCC-CCcEEEEeeCCCceEEEEEcCe-EEEEEEcCCCceeEeeeecCCCCceEEEec--
Q 003405 94 SES---IAFHRLPNLETIAVLTKA-KGANVYSWDDRRGFLCFARQKR-VCIFRHDGGRGFVEVKDFGVPDTVKSMSWC-- 166 (823)
Q Consensus 94 ~d~---l~~~~L~~l~~~~~i~~~-kg~~~fa~~~~~~~l~V~~kkk-i~l~~~~~~~~f~~~kei~~~~~~~~l~~~-- 166 (823)
--+ |.++++..-.....+... .....+++++..+.|.++-... =.|+++..+......---.--..|.+|+|.
T Consensus 177 d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~ 256 (386)
T 3v65_B 177 DSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYA 256 (386)
T ss_dssp ETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGG
T ss_pred cCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCC
Q ss_pred CCeEEEEEc--CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE--EeCCeEEEEc-CCCccccCCceeec-CCCc
Q 003405 167 GENICIAIR--KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL--GKENIGVFVD-QNGKLLQADRICWS-EAPI 240 (823)
Q Consensus 167 ~~~i~v~~~--~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL--~~~~~gvfv~-~~G~~~~~~~i~w~-~~P~ 240 (823)
++.|+|+.. .....+|++.+....+...+ ...|..+.+.++.+.+ +.++...-++ .+|.. ...|.-. ..|.
T Consensus 257 ~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~--~~~i~~~~~~p~ 333 (386)
T 3v65_B 257 GRRMYWVDAKHHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDWHTKSINSANKFTGKN--QEIIRNKLHFPM 333 (386)
T ss_dssp GTEEEEEETTTTEEEEECTTSCSCEEEECSS-CSSEEEEEEETTEEEEEETTTTEEEEEETTTCCS--CEEEECSCSCCC
T ss_pred CCEEEEEECCCCEEEEEeCCCCeeEEEEECC-CCCceEEEEECCEEEEeeCCCCeEEEEECCCCcc--eEEEccCCCCCc
Q ss_pred EEEEeCC
Q 003405 241 AVIIQKP 247 (823)
Q Consensus 241 ~v~~~~P 247 (823)
.+++..|
T Consensus 334 gi~v~~~ 340 (386)
T 3v65_B 334 DIHTLHP 340 (386)
T ss_dssp CEEEESG
T ss_pred eEEEEch
No 310
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=58.13 E-value=1.9e+02 Score=30.67 Aligned_cols=215 Identities=7% Similarity=0.015 Sum_probs=0.0
Q ss_pred CcEEEEEEe--CCEEEEE-eCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE
Q 003405 17 PKIDAVASY--GLKILLG-CSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (823)
Q Consensus 17 ~~I~ci~~~--~~~L~vG-T~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l 93 (823)
..+..++.. ++.||+. ...+.|+.+++.+...... ...+....-.....|.+....+.|.+.
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~---------------~~~~~~~~~~~p~glavD~~~~~lY~~ 176 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISRDIQAPDGLAVDWIHSNIYWT 176 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CC---------------CEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCc---------------ceEEEeCCCCCcccEEEEecCCceEEE
Q ss_pred eCc---EEEEeCCCCccccccc-CCCCcEEEEeeCCCceEEEEEcCe-EEEEEEcCCCceeEeeeecCCCCceEEEec--
Q 003405 94 SES---IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFARQKR-VCIFRHDGGRGFVEVKDFGVPDTVKSMSWC-- 166 (823)
Q Consensus 94 ~d~---l~~~~L~~l~~~~~i~-~~kg~~~fa~~~~~~~l~V~~kkk-i~l~~~~~~~~f~~~kei~~~~~~~~l~~~-- 166 (823)
--+ |.+.++..-.....+. .......+++++..+.|+++--.. =.|++...+......---.--..|.+|++.
T Consensus 177 d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~ 256 (400)
T 3p5b_L 177 DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLL 256 (400)
T ss_dssp ETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETT
T ss_pred ECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeC
Q ss_pred CCeEEEEEc--CceEEEEcCCCCeeeccCC-CCCCCCEEEEccCCeEEE--EeCCeEEEEc-CCCccccCCceeecCC-C
Q 003405 167 GENICIAIR--KGYMILNATNGALSEVFPS-GRIGPPLVVSLLSGELLL--GKENIGVFVD-QNGKLLQADRICWSEA-P 239 (823)
Q Consensus 167 ~~~i~v~~~--~~y~lidl~~~~~~~L~~~-~~~~~p~i~~~~~~EfLL--~~~~~gvfv~-~~G~~~~~~~i~w~~~-P 239 (823)
++.|+|+.. .....+|++.+....+... +....|..+.+..+.+.+ +.++...-+| .+|.. ...+.-... |
T Consensus 257 ~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~--~~~i~~~~~~p 334 (400)
T 3p5b_L 257 SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD--VNLLAENLLSP 334 (400)
T ss_dssp TTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCC--CEEEECSCSCE
T ss_pred CCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCc--eEEEecCCCCC
Q ss_pred cEEEEeCCE
Q 003405 240 IAVIIQKPY 248 (823)
Q Consensus 240 ~~v~~~~PY 248 (823)
..+++..|.
T Consensus 335 ~~i~v~~~~ 343 (400)
T 3p5b_L 335 EDMVLFHNL 343 (400)
T ss_dssp EEEEEESGG
T ss_pred ceEEEEeec
No 311
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=57.92 E-value=11 Score=31.12 Aligned_cols=55 Identities=18% Similarity=0.067 Sum_probs=40.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
....+...|++++|+..++.....++ ....+....|..++..|+|++|...|.++
T Consensus 44 ~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 44 RSAAYAKKGDYQKAYEDGCKTVDLKP-----DWGKGYSRKAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34456788999999999876421110 12345677889999999999999999873
No 312
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=57.75 E-value=9.8 Score=32.47 Aligned_cols=55 Identities=20% Similarity=0.092 Sum_probs=39.7
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
....+...|++++|+..++.....+ .....+....|..++..|+|++|...|.++
T Consensus 56 la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 56 RAACYTKLLEFQLALKDCEECIQLE-----PTFIKGYTRKAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHHTTTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-----CCchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445568899999999987642111 012345667799999999999999999873
No 313
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=57.28 E-value=1.3e+02 Score=28.44 Aligned_cols=177 Identities=13% Similarity=0.079 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCcccccccCChHHHHHHhhcCCCCChhhHHHhhhhhhhcCcccccccc
Q 003405 549 YTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELF 628 (823)
Q Consensus 549 ~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~~~~~~~~~~i~yL~~L~~~~~~li~~y~~wll~~~p~~~~~if 628 (823)
+..++..|...|++++|++.+.+............... .............++ +.+--.++..-.++.+|.
T Consensus 41 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~------ 111 (258)
T 3uq3_A 41 LNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI-SKSFARIGNAYHKLG--DLKKTIEYYQKSLTEHRT------ 111 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH-HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHH-HHHHHHHHHHHHHcc--cHHHHHHHHHHHHhcCch------
Confidence 56788999999999999999998764332110000000 000000111111111 222222232233333322
Q ss_pred ccCCCChHHHHHHHhhcCchhHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccchHHHHHHHH
Q 003405 629 LSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLS 708 (823)
Q Consensus 629 ~~~~l~~~~Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kLl~ 708 (823)
..+...+.. .+.+..+++.++... ......+..++..|... +...+...-+..
T Consensus 112 -------~~~~~~~~~--~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----------------~~~~~A~~~~~~ 164 (258)
T 3uq3_A 112 -------ADILTKLRN--AEKELKKAEAEAYVN--PEKAEEARLEGKEYFTK----------------SDWPNAVKAYTE 164 (258)
T ss_dssp -------HHHHHHHHH--HHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHH
T ss_pred -------hHHHHHHhH--HHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHh----------------cCHHHHHHHHHH
Confidence 223333332 345666777766431 23445666666666542 011112222222
Q ss_pred HhhhcCCCChHHHhccCCCC-chhhHHHHHhhccccHHHHHHHHHHHh--CCCchhHHHHHHHHhcCC
Q 003405 709 ALESISGYNPEVLLKRLPAD-ALYEERAILLGKMNQHELALSLYVHKV--FLINQPVFLLIRRMAMDI 773 (823)
Q Consensus 709 fL~~s~~Yd~~~~L~~~~~~-~l~~e~~~Ll~klg~h~~AL~ilv~~L--~D~~~a~~~~l~~~y~~~ 773 (823)
.++. .+.+ ..+...+.++.++|++++|+..+-.-+ ..-....|..+...|...
T Consensus 165 a~~~------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 220 (258)
T 3uq3_A 165 MIKR------------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 220 (258)
T ss_dssp HHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHhc------------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 2222 2222 345567777888888888888776543 333455666667776664
No 314
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=57.08 E-value=2.2e+02 Score=31.08 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=53.1
Q ss_pred cEEEEeCCCCcccccccCC-CC--cE--EEEeeCCCceEEEE-------EcCeEEEEEEcCCCceeEeeeecC-------
Q 003405 96 SIAFHRLPNLETIAVLTKA-KG--AN--VYSWDDRRGFLCFA-------RQKRVCIFRHDGGRGFVEVKDFGV------- 156 (823)
Q Consensus 96 ~l~~~~L~~l~~~~~i~~~-kg--~~--~fa~~~~~~~l~V~-------~kkki~l~~~~~~~~f~~~kei~~------- 156 (823)
.|.+|++.+-+...++.-. .| .. .|+.+++.....|+ ....|.+|.++++ .|...+.+.+
T Consensus 229 ~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g-~~~~~~vIdi~~~~v~~ 307 (462)
T 2ece_A 229 RIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG-KWNAEKVIEIPAEPLEG 307 (462)
T ss_dssp EEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT-EEEEEEEEEECCEECCS
T ss_pred EEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC-ceeEEEEEeCCCccccc
Confidence 3999999875544444322 11 11 24557766554444 3457888888754 4654443322
Q ss_pred ------------CCCceEEEec--CCeEEEEEc--CceEEEEcCC
Q 003405 157 ------------PDTVKSMSWC--GENICIAIR--KGYMILNATN 185 (823)
Q Consensus 157 ------------~~~~~~l~~~--~~~i~v~~~--~~y~lidl~~ 185 (823)
+..|..|.+. |..++|++. ....++|+.+
T Consensus 308 ~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 308 NLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp SCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred cccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 1345666665 668999998 5678889864
No 315
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=56.58 E-value=11 Score=34.32 Aligned_cols=55 Identities=25% Similarity=0.282 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 305 ~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
.....+...|+|++|+..++.....+. .....+...|..++..|+|++|...|.+
T Consensus 50 ~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 50 NRAAAYSASGQHEKAAEDAELATVVDP-----KYSKAWSRLGLARFDMADYKGAKEAYEK 104 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 344556789999999999876421111 1235667789999999999999999987
No 316
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=56.10 E-value=98 Score=28.07 Aligned_cols=78 Identities=19% Similarity=0.101 Sum_probs=47.8
Q ss_pred HHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccchHHHHHHHHHhhhcCCCChHHHhccCCCCc
Q 003405 650 QGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADA 729 (823)
Q Consensus 650 ~~~YLE~li~~~~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kLl~fL~~s~~Yd~~~~L~~~~~~~ 729 (823)
.+.+++..+... ..++..|..|+..|... +...+...-+...|+..+.+.. ..
T Consensus 93 a~~~~~~al~~~--P~~~~~~~~la~~~~~~----------------g~~~~A~~~~~~~l~~~p~~~~---------~~ 145 (176)
T 2r5s_A 93 ELKRLEQELAAN--PDNFELACELAVQYNQV----------------GRDEEALELLWNILKVNLGAQD---------GE 145 (176)
T ss_dssp HHHHHHHHHHHS--TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHTTCTTTTT---------TH
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHc----------------ccHHHHHHHHHHHHHhCcccCh---------HH
Confidence 467788877642 34678888888888763 1122234444454544433311 12
Q ss_pred hhhHHHHHhhccccHHHHHHHHHHH
Q 003405 730 LYEERAILLGKMNQHELALSLYVHK 754 (823)
Q Consensus 730 l~~e~~~Ll~klg~h~~AL~ilv~~ 754 (823)
.....+-++.++|++++|+..|-..
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 3456677888899999998877544
No 317
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=56.06 E-value=11 Score=31.94 Aligned_cols=55 Identities=18% Similarity=0.138 Sum_probs=40.2
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
....+...|++++|+..++.....+. ....+....|..++..|+|++|...|.++
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKELDP-----TNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44566789999999999876421110 12345667799999999999999999873
No 318
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=55.62 E-value=6.8 Score=35.72 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=41.2
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCc-----------chHhh--hhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 304 GAQIVQLTASGDFEEALALCKLLPPE-----------DASLR--AAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 304 ~~qI~~Ll~~~~~e~Al~L~~~~~~~-----------~~~~~--~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
...-..++..|+|++|+...+..... +.... ......++...|..++..|+|++|+..|.++
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34455678899999998887653100 00000 1122356777799999999999999999873
No 319
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=55.06 E-value=13 Score=31.32 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=40.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
....+...|++++|+..++.....+. ....+....|..++..|+|++|...|.++
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 72 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELNP-----ANAVYFCNRAAAYSKLGNYAGAVQDCERA 72 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 44566789999999999876421110 12345667789999999999999999873
No 320
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=53.99 E-value=2.1e+02 Score=29.72 Aligned_cols=206 Identities=9% Similarity=-0.033 Sum_probs=0.0
Q ss_pred EEEEeCCEEEEEe-CCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeCc---
Q 003405 21 AVASYGLKILLGC-SDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSES--- 96 (823)
Q Consensus 21 ci~~~~~~L~vGT-~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d~--- 96 (823)
.++..++.||+.. ..|.|+.++..+.. ...+....-.....|.+.+..+.|.+.-.+
T Consensus 79 ~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------------------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~ 139 (349)
T 3v64_C 79 DFHHRRELVFWSDVTLDRILRANLNGSN-------------------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSR 139 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCS-------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTE
T ss_pred EEeccccEEEEEeccCCceEEEecCCCC-------------------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCe
Q ss_pred EEEEeCCCCcccccc-cCCCCcEEEEeeCCCceEEEEEcCe-EEEEEEcCCCceeEeeeecCCCCceEEEec--CCeEEE
Q 003405 97 IAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFARQKR-VCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GENICI 172 (823)
Q Consensus 97 l~~~~L~~l~~~~~i-~~~kg~~~fa~~~~~~~l~V~~kkk-i~l~~~~~~~~f~~~kei~~~~~~~~l~~~--~~~i~v 172 (823)
|.++++..-.....+ ........+++++..+.|.++-... =.|+++..+......---.--..|.+|++. ++.|+|
T Consensus 140 I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~ 219 (349)
T 3v64_C 140 IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYW 219 (349)
T ss_dssp EEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEE
T ss_pred EEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEE
Q ss_pred EEc--CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE--EeCCeEEEEc-CCCccccCCceeecCCCcEEEEeCC
Q 003405 173 AIR--KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL--GKENIGVFVD-QNGKLLQADRICWSEAPIAVIIQKP 247 (823)
Q Consensus 173 ~~~--~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL--~~~~~gvfv~-~~G~~~~~~~i~w~~~P~~v~~~~P 247 (823)
+.. .....+|++.+....+...+ ...|..+.+.++.+.+ +.++...-++ .+|... +.-..=-..|..+++..|
T Consensus 220 aD~~~~~I~~~~~dG~~~~~~~~~~-~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~-~~i~~~~~~p~gi~v~~~ 297 (349)
T 3v64_C 220 VDAKHHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ-EIIRNKLHFPMDIHTLHP 297 (349)
T ss_dssp EETTTTEEEEEETTSCSCEEEECSS-CSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSC-EEEECSCSCCCCEEEECG
T ss_pred EECCCCEEEEEeCCCCceEEEEeCC-CCCceEEEEECCEEEEecCCCCeEEEEEccCCCcc-EEeccCCCCCceEEEEcc
No 321
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=53.98 E-value=13 Score=31.48 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=38.5
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
...+...|++++|+..++.....+. .....+...|..++..|++++|...|.++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 26 GKTYAEHEQFDAALPHLRAALDFDP-----TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455788999999999876421111 12235566789999999999999998863
No 322
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=53.79 E-value=12 Score=30.71 Aligned_cols=57 Identities=16% Similarity=-0.035 Sum_probs=40.5
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHcc-CCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDT-GSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~-~~f~~A~~~f~~~ 365 (823)
....+...|++++|+..++.....+.. .....+....|..++.. |+|++|.+.|.++
T Consensus 46 ~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 46 KGKALYNLERYEEAVDCYNYVINVIED---EYNKDVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSCC---TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcc---cchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345567889999999998764211100 00235667789999999 9999999999873
No 323
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=53.21 E-value=42 Score=35.54 Aligned_cols=64 Identities=9% Similarity=-0.032 Sum_probs=43.1
Q ss_pred EEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC-c-EE
Q 003405 21 AVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-S-IA 98 (823)
Q Consensus 21 ci~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d-~-l~ 98 (823)
+.+..+..+.-|+.||+|.+|++... ++..++++.+...+..+..-|+.++|++-++ + |+
T Consensus 290 sg~~sg~~lASgS~DgTIkIWDl~tG------------------k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIk 351 (356)
T 2w18_A 290 EGDVKDHCAAAILTSGTIAIWDLLLG------------------QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIF 351 (356)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTC------------------SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEE
T ss_pred ccccCCCEEEEEcCCCcEEEEECCCC------------------cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEE
Confidence 33333456788899999999997642 2234444443344556888888888888875 4 99
Q ss_pred EEeC
Q 003405 99 FHRL 102 (823)
Q Consensus 99 ~~~L 102 (823)
+|++
T Consensus 352 lWd~ 355 (356)
T 2w18_A 352 VYHY 355 (356)
T ss_dssp EEEE
T ss_pred EecC
Confidence 9974
No 324
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=53.16 E-value=61 Score=37.80 Aligned_cols=114 Identities=11% Similarity=0.076 Sum_probs=61.0
Q ss_pred eeEEEEecccCceeeEeC-c----EEEEeCCCCcccccc-cCCCCcEEEEeeCCCceEEEEE--cCeEEEEEEcCCCcee
Q 003405 78 ILSMEVLASRQLLLSLSE-S----IAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHDGGRGFV 149 (823)
Q Consensus 78 I~qI~~~~~~~~Ll~l~d-~----l~~~~L~~l~~~~~i-~~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~~~~~f~ 149 (823)
-..|.+.|..+.|.+ +| + |..+++..-.....+ ......+.+++++..++|.++- .++|..+...+.. .+
T Consensus 498 P~giavDp~~g~ly~-td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~ 575 (699)
T 1n7d_A 498 PRAIVVDPVHGFMYW-TDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RK 575 (699)
T ss_dssp CCCEECCSSSSCCEE-CCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CE
T ss_pred cceEEEccCCCcEEE-cccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eE
Confidence 355666665555443 33 1 555544321100000 1233345688888778888874 3456666655321 12
Q ss_pred Eeeee-cCCCCceEEEecCCeEEEEEc--CceEEEEcCCCCeeeccC
Q 003405 150 EVKDF-GVPDTVKSMSWCGENICIAIR--KGYMILNATNGALSEVFP 193 (823)
Q Consensus 150 ~~kei-~~~~~~~~l~~~~~~i~v~~~--~~y~lidl~~~~~~~L~~ 193 (823)
.+-.. ..-..|.+|++.++.|+|+.. .....+|..+|+....+.
T Consensus 576 ~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 576 TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence 22111 111357788888889998876 346667776776554443
No 325
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=53.09 E-value=15 Score=30.97 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 305 ~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.....+...|++++|+..++.....+ .....+....|..++..|+|++|...|.++
T Consensus 51 ~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 51 NRAAAYSKLGNYAGAVQDCERAICID-----PAYSKAYGRMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhcC-----ccCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33455678999999999987642111 012345677899999999999999999873
No 326
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=52.91 E-value=15 Score=30.58 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=39.7
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
....+...|++++|+.+++....... ....+....|..++..|+|++|...|.++
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 69 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKALELDP-----NNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc-----CcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34566789999999999876421110 11245667788999999999999999873
No 327
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=52.62 E-value=9.1 Score=34.80 Aligned_cols=53 Identities=17% Similarity=0.072 Sum_probs=38.9
Q ss_pred HHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 308 VQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 308 ~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
..++..|+|++|+..++.....++ .....+...|..++..|+|++|...|.++
T Consensus 71 ~~~~~~~~~~~A~~~~~~al~~~p-----~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 71 QCYLNIGDLHEAEETSSEVLKREE-----TNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCC-----cchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 345678999999999876421111 12345667799999999999999999873
No 328
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=52.49 E-value=1.9e+02 Score=28.84 Aligned_cols=202 Identities=10% Similarity=0.096 Sum_probs=108.0
Q ss_pred cEEEEEEeC--C-EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEe
Q 003405 18 KIDAVASYG--L-KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (823)
Q Consensus 18 ~I~ci~~~~--~-~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~ 94 (823)
-.++..... + .++++...|.|+.|+..... . ..+. . ...+..|...++.++++...
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~----------------~---~~~~-~-~~~~~~i~~~~dG~l~v~~~ 72 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ----------------V---QRVT-M-DAPVSSVALRQSGGYVATIG 72 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCC----------------E---EEEE-C-SSCEEEEEEBTTSSEEEEET
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCc----------------E---EEEe-C-CCceEEEEECCCCCEEEEEC
Confidence 345655543 4 45667788999999855321 1 1111 1 35688888888877544433
Q ss_pred CcEEEEeCCC--Cccccccc---CCCCcEEEEeeCCCceEEEEE-----------cCeEEEEEEcCCCceeEeeeecCCC
Q 003405 95 ESIAFHRLPN--LETIAVLT---KAKGANVYSWDDRRGFLCFAR-----------QKRVCIFRHDGGRGFVEVKDFGVPD 158 (823)
Q Consensus 95 d~l~~~~L~~--l~~~~~i~---~~kg~~~fa~~~~~~~l~V~~-----------kkki~l~~~~~~~~f~~~kei~~~~ 158 (823)
++|..++..+ ++.+.... ....++.++++++ |++.++. ...-.||++..+.....+.. -..
T Consensus 73 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~d-G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~--~~~ 149 (297)
T 3g4e_A 73 TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPA-GRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD--QVD 149 (297)
T ss_dssp TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTT-SCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE--EES
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCC-CCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee--ccc
Confidence 3698998754 22222211 1123566777765 4566663 23457888875433322211 123
Q ss_pred CceEEEec--CCeEEEEEc--CceEEEEc--CCCCee--e-ccCCCC-CCCCEEEEc-cCCeEEEEe--CCeEEEEcCC-
Q 003405 159 TVKSMSWC--GENICIAIR--KGYMILNA--TNGALS--E-VFPSGR-IGPPLVVSL-LSGELLLGK--ENIGVFVDQN- 224 (823)
Q Consensus 159 ~~~~l~~~--~~~i~v~~~--~~y~lidl--~~~~~~--~-L~~~~~-~~~p~i~~~-~~~EfLL~~--~~~gvfv~~~- 224 (823)
.|.+++|. ++.++++.. .....+|+ .+|... . +..... ...|--+.+ +++.+.++. ++....++.+
T Consensus 150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT
T ss_pred cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 57889997 456888875 45677776 455432 1 222111 123443333 456666653 2345567775
Q ss_pred CccccCCceeec-CCCcEEEEe
Q 003405 225 GKLLQADRICWS-EAPIAVIIQ 245 (823)
Q Consensus 225 G~~~~~~~i~w~-~~P~~v~~~ 245 (823)
|+.. ..+.-+ ..|..+++.
T Consensus 230 G~~~--~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 230 GKRL--QTVKLPVDKTTSCCFG 249 (297)
T ss_dssp CCEE--EEEECSSSBEEEEEEE
T ss_pred ceEE--EEEECCCCCceEEEEe
Confidence 7653 234333 234555544
No 329
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=51.62 E-value=79 Score=35.37 Aligned_cols=130 Identities=13% Similarity=0.067 Sum_probs=75.1
Q ss_pred CCCeeEEEEecccCceeeEeC--c-EEEEeCCCCcccccccCCC--CcEEEEeeCCCceEEEEEc----CeEEEEEEcC-
Q 003405 75 KKPILSMEVLASRQLLLSLSE--S-IAFHRLPNLETIAVLTKAK--GANVYSWDDRRGFLCFARQ----KRVCIFRHDG- 144 (823)
Q Consensus 75 k~~I~qI~~~~~~~~Ll~l~d--~-l~~~~L~~l~~~~~i~~~k--g~~~fa~~~~~~~l~V~~k----kki~l~~~~~- 144 (823)
..+|..+...|+...++..++ + +.+|.+..-+. .++.... ++..++.+++ ..++++.. +...||.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 568999999999888888774 4 88998743322 2233322 4556666766 33444443 4566777753
Q ss_pred -CCceeEeeeecCCCCce--EEEecCCeEEEEEc--CceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEE
Q 003405 145 -GRGFVEVKDFGVPDTVK--SMSWCGENICIAIR--KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL 212 (823)
Q Consensus 145 -~~~f~~~kei~~~~~~~--~l~~~~~~i~v~~~--~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL 212 (823)
+..-. .+...+.+. ++++.|+.+.+++. ....++|+.+|+...+..... -.+...+++.+++
T Consensus 99 ~~g~~~---~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la 165 (582)
T 3o4h_A 99 RPGEEQ---RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIA 165 (582)
T ss_dssp STTCCE---ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEE
T ss_pred CCCccc---cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEE
Confidence 22111 222222333 44445766555433 456789999987766654321 2344456788877
No 330
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=50.96 E-value=17 Score=30.25 Aligned_cols=56 Identities=18% Similarity=0.319 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 305 ~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.....+...|++++|+..++.....+ ..........|..++..++|++|...|.++
T Consensus 48 ~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 48 NLGNAYYKQGDYDEAIEYYQKALELD-----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-----CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34555678899999999987642110 011245566788899999999999999863
No 331
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.61 E-value=14 Score=32.29 Aligned_cols=55 Identities=13% Similarity=0.074 Sum_probs=39.8
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
....+...|+|++|+..++.....+ ......+...|..++..++|++|...|.++
T Consensus 71 ~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 71 RAACHLKLEDYDKAETEASKAIEKD-----GGDVKALYRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-----SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHhhC-----ccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445578899999999987641110 012345667899999999999999999863
No 332
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=49.89 E-value=15 Score=34.71 Aligned_cols=60 Identities=17% Similarity=0.131 Sum_probs=39.8
Q ss_pred HHHHHHhcCCHHHHHHHhhhCC---CcchH-----hhh---hcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLP---PEDAS-----LRA---AKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~---~~~~~-----~~~---~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.-..++..|+|++|+..++... +.+.. ... .-...++...|..++..|+|++|+..|.++
T Consensus 44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3445578899999999887531 11110 000 001256667899999999999999999873
No 333
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=49.58 E-value=2.1e+02 Score=28.56 Aligned_cols=133 Identities=9% Similarity=0.104 Sum_probs=71.2
Q ss_pred EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC---cEEEEeCC-
Q 003405 28 KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE---SIAFHRLP- 103 (823)
Q Consensus 28 ~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d---~l~~~~L~- 103 (823)
.+|+++.+|.|+.|+..+. . +.+.. ....+..+...++.+ +++... +|..++..
T Consensus 59 l~~~d~~~~~i~~~~~~g~-----------------~---~~~~~-~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~g 116 (305)
T 3dr2_A 59 LVWSDLVGRRVLGWREDGT-----------------V---DVLLD-ATAFTNGNAVDAQQR-LVHCEHGRRAITRSDADG 116 (305)
T ss_dssp EEEEETTTTEEEEEETTSC-----------------E---EEEEE-SCSCEEEEEECTTSC-EEEEETTTTEEEEECTTS
T ss_pred EEEEECCCCEEEEEeCCCC-----------------E---EEEeC-CCCccceeeECCCCC-EEEEECCCCEEEEECCCC
Confidence 4788899999999964321 1 11111 234577788877765 444432 38888763
Q ss_pred CCcccccc---cCCCCcEEEEeeCCCceEEEE-----Ec------------CeEEEEEEcC-CCceeEeeeecCCCCceE
Q 003405 104 NLETIAVL---TKAKGANVYSWDDRRGFLCFA-----RQ------------KRVCIFRHDG-GRGFVEVKDFGVPDTVKS 162 (823)
Q Consensus 104 ~l~~~~~i---~~~kg~~~fa~~~~~~~l~V~-----~k------------kki~l~~~~~-~~~f~~~kei~~~~~~~~ 162 (823)
++...... .....++.++++++ |.+.++ .. ..-.||+++. +..+..+.. ...|.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~i~~d~d-G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~---~~~p~g 192 (305)
T 3dr2_A 117 QAHLLVGRYAGKRLNSPNDLIVARD-GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMAD---LDHPNG 192 (305)
T ss_dssp CEEEEECEETTEECSCCCCEEECTT-SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEE---ESSEEE
T ss_pred CEEEEEeccCCCccCCCCCEEECCC-CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEec---CCCCcc
Confidence 11111100 11223455777764 456552 11 1245777764 223433222 235778
Q ss_pred EEec--CCeEEEEEcC-------ceEEEEcCCC
Q 003405 163 MSWC--GENICIAIRK-------GYMILNATNG 186 (823)
Q Consensus 163 l~~~--~~~i~v~~~~-------~y~lidl~~~ 186 (823)
++|. |..++++... ....+++.++
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence 8887 4468887653 4566676543
No 334
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=49.48 E-value=16 Score=34.99 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=43.3
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhcCCCHHHHHHhCCCC
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSI 379 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dP~~vi~Lfp~l 379 (823)
...+...|++++|+..++.....++ .-...+...|..++..|+|++|+..|.+ ++.+-|+.
T Consensus 61 g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~-------al~~~P~~ 121 (208)
T 3urz_A 61 ALAYKKNRNYDKAYLFYKELLQKAP-----NNVDCLEACAEMQVCRGQEKDALRMYEK-------ILQLEADN 121 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHH-------HHHHCTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH-------HHHcCCCC
Confidence 4456789999999999876421111 1224566779999999999999999986 45555544
No 335
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=49.38 E-value=17 Score=32.43 Aligned_cols=55 Identities=13% Similarity=0.050 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 305 ~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
.....+...|++++|+..++.....+ .....+....|..++..|+|++|+..|.+
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 72 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELN-----PSNAIYYGNRSLAYLRTECYGYALGDATR 72 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33455678999999999987642111 01234566779999999999999999986
No 336
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=49.33 E-value=3.3e+02 Score=30.63 Aligned_cols=118 Identities=10% Similarity=0.117 Sum_probs=67.3
Q ss_pred CCeeEEEEecccCceeeEeC------------cEEEEeCCC------Cccccccc-C-CCCcEEEEeeCCCceEEEEE-c
Q 003405 76 KPILSMEVLASRQLLLSLSE------------SIAFHRLPN------LETIAVLT-K-AKGANVYSWDDRRGFLCFAR-Q 134 (823)
Q Consensus 76 ~~I~qI~~~~~~~~Ll~l~d------------~l~~~~L~~------l~~~~~i~-~-~kg~~~fa~~~~~~~l~V~~-k 134 (823)
..+..+...|+.+.|+..++ .|.+|++.+ -+ ...+. . ...+..++++++...|+++. .
T Consensus 130 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~ 208 (662)
T 3azo_A 130 LRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGRQAVWLAWD 208 (662)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSSEEEEEEEC
T ss_pred ccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCCCEEEEEECC
Confidence 45777888888887776652 278888765 22 22232 2 22344566788777777664 3
Q ss_pred --------CeEEEEEEcCCCceeEeeeecC--CCCceEEEec-CCeEEEEEc-C---ceEEEEcCCCCeeeccCC
Q 003405 135 --------KRVCIFRHDGGRGFVEVKDFGV--PDTVKSMSWC-GENICIAIR-K---GYMILNATNGALSEVFPS 194 (823)
Q Consensus 135 --------kki~l~~~~~~~~f~~~kei~~--~~~~~~l~~~-~~~i~v~~~-~---~y~lidl~~~~~~~L~~~ 194 (823)
..|.++...++......+.+.. ...+.++.|. ++.+++... . ....+|+.+++...+.+.
T Consensus 209 ~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 283 (662)
T 3azo_A 209 HPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR 283 (662)
T ss_dssp TTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC
T ss_pred CCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc
Confidence 2466666663221222222221 3577888997 223555554 3 345566767877777653
No 337
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=49.15 E-value=18 Score=34.67 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=13.4
Q ss_pred HHHhccHHHHHHHHHHHhh
Q 003405 556 YKSNARHREALKLLHELVE 574 (823)
Q Consensus 556 y~~~g~~~~AL~ll~~l~~ 574 (823)
....+.+++|++.+.+...
T Consensus 190 ~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 190 AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4556778888888877653
No 338
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=49.03 E-value=33 Score=28.64 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=40.3
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhh--hhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLR--AAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~--~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
....+...|++++|+..++.......... ......+....|..++..|+|++|...|.+
T Consensus 44 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 44 QAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34456788999999999876421111000 001145667789999999999999999986
No 339
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=48.85 E-value=20 Score=30.15 Aligned_cols=52 Identities=19% Similarity=0.385 Sum_probs=23.5
Q ss_pred HHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 308 VQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 308 ~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
..+...|++++|+..++....... ....+....|..++..|++++|...|.+
T Consensus 43 ~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 94 (136)
T 2fo7_A 43 NAYYKQGDYDEAIEYYQKALELDP-----RSAEAWYNLGNAYYKQGDYDEAIEYYQK 94 (136)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCC-----CchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 334455666666665544210000 0112333345555555555555555544
No 340
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=48.66 E-value=16 Score=32.28 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=38.4
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
-..+...|+|++|+..++.....++ .-...+...|..++..|+|++|...|.+
T Consensus 59 g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 59 GACRQSLGLYEQALQSYSYGALMDI-----NEPRFPFHAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-----TCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445688999999999876411110 1123566679999999999999999986
No 341
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=47.84 E-value=21 Score=36.22 Aligned_cols=62 Identities=11% Similarity=0.056 Sum_probs=41.2
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCcchHhhh-hcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 304 GAQIVQLTASGDFEEALALCKLLPPEDASLRA-AKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 304 ~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~-~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
..++..++..|+|++|+.+++........... ......+...|..++.+++|++|+.+|.++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~a 141 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKL 141 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHH
Confidence 45678889999999999999874211100000 011223444577788889999999999873
No 342
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=47.66 E-value=20 Score=30.95 Aligned_cols=55 Identities=20% Similarity=0.264 Sum_probs=40.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
....+...|++++|+..++.....+ ......+...|..++..|+|++|...|.++
T Consensus 49 l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 49 RALCYLKMQQPEQALADCRRALELD-----GQSVKAHFFLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-----chhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445678899999999887642111 012345677899999999999999999873
No 343
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=47.58 E-value=35 Score=31.98 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=40.9
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
....+...|+|++|+..++...+. ...++...|..++..|+|++|+..|.++
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 63 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQDP--------HSRICFNIGCMYTILKNMTEAEKAFTRS 63 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSSSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHcCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345567899999999999876311 1246777899999999999999999873
No 344
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=47.35 E-value=45 Score=31.81 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=41.6
Q ss_pred HHHHHhcCCHHHHHHHhhhCC---CcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc-CCCHH
Q 003405 307 IVQLTASGDFEEALALCKLLP---PEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS-QVDIT 370 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~---~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~-~~dP~ 370 (823)
...+...|++++|+..++... +.+.... .....++...|..++..|+|++|+..|.++ ..+|.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIE-KLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHH-HHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 344567788888888776531 1111111 123355777899999999999999999885 45665
No 345
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=47.26 E-value=19 Score=32.05 Aligned_cols=54 Identities=15% Similarity=0.033 Sum_probs=39.5
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
....+...|++++|+..++.....+ ..........|..++..|+|++|...|.+
T Consensus 53 ~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 53 RSLAYLRTECYGYALGDATRAIELD-----KKYIKGYYRRAASNMALGKFRAALRDYET 106 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3445678899999999987642111 01234566789999999999999999987
No 346
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=46.57 E-value=2.8e+02 Score=29.74 Aligned_cols=140 Identities=7% Similarity=-0.015 Sum_probs=77.4
Q ss_pred CCceEEEec---CCeEEEEEc-CceEEEEcCCCCeeeccCCCCCCCCEEEEc-cCCeEEEEeC------C-eEEEEcCCC
Q 003405 158 DTVKSMSWC---GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSL-LSGELLLGKE------N-IGVFVDQNG 225 (823)
Q Consensus 158 ~~~~~l~~~---~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~-~~~EfLL~~~------~-~gvfv~~~G 225 (823)
..|.+|++. ++.|+++.. .....+|+.++.+..+.+.+ ..|.-+.+ +++..|.+.+ . ..+.++.+|
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~--~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g 214 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGL--SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES 214 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCC--SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCC--CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence 368899987 357888887 56777898888777766532 35775554 5566444332 1 234456666
Q ss_pred ccccCCceeecCCCcEEEEeC--CEEEEEeC--CeEEEEEccCCCceeEEEeeCC---cccc--cccCCeEEEe--ccce
Q 003405 226 KLLQADRICWSEAPIAVIIQK--PYAIALLP--RRVEVRSLRVPYALIQTIVLQN---VRHL--IPSSNAVVVA--LENS 294 (823)
Q Consensus 226 ~~~~~~~i~w~~~P~~v~~~~--PYll~~~~--~~ieV~~l~~~~~lvQ~i~l~~---~~~l--~~~~~~v~v~--s~~~ 294 (823)
.......+.=-..|..+++.. -+|++... ..|.+++.. +....+....+. .+.+ .+.++.+|++ ..+.
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~-~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFT-TQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETT-TTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECC-CCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 543112232234567777653 45555542 456666653 233223333322 2222 2344547776 3567
Q ss_pred EEEeec
Q 003405 295 IFGLFP 300 (823)
Q Consensus 295 I~~l~~ 300 (823)
|+++..
T Consensus 294 I~~~~~ 299 (430)
T 3tc9_A 294 ILRSDY 299 (430)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 888654
No 347
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=46.53 E-value=2.4e+02 Score=32.56 Aligned_cols=113 Identities=13% Similarity=0.211 Sum_probs=68.7
Q ss_pred eeEEEEecccCceeeEeCc-EEEEeCCCCcccccccC--CC--Cc--EEEEeeCCCceEEEEEc----------CeEEEE
Q 003405 78 ILSMEVLASRQLLLSLSES-IAFHRLPNLETIAVLTK--AK--GA--NVYSWDDRRGFLCFARQ----------KRVCIF 140 (823)
Q Consensus 78 I~qI~~~~~~~~Ll~l~d~-l~~~~L~~l~~~~~i~~--~k--g~--~~fa~~~~~~~l~V~~k----------kki~l~ 140 (823)
...+.-.++..++.. +|+ |.+|++.+-+....+.. .. .+ ..++++++...|+++.. ..+.+|
T Consensus 19 ~~~~~w~~dg~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 19 LYSLRWISDHEYLYK-QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp CCCEEECSSSEEEEE-ETTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccccEECCCCcEEEE-cCCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence 445666776655544 475 99999865442211111 11 22 23788888777777654 234455
Q ss_pred EEcCCCceeEeeeecCCCCceEEEec--CCeEEEEEcCceEEEEcCCCCeeeccCC
Q 003405 141 RHDGGRGFVEVKDFGVPDTVKSMSWC--GENICIAIRKGYMILNATNGALSEVFPS 194 (823)
Q Consensus 141 ~~~~~~~f~~~kei~~~~~~~~l~~~--~~~i~v~~~~~y~lidl~~~~~~~L~~~ 194 (823)
....+ ....+ ...++.+...+|. |..|+++......+.|+.+|+...+...
T Consensus 98 d~~~~-~~~~l--~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~ 150 (740)
T 4a5s_A 98 DLNKR-QLITE--ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWT 150 (740)
T ss_dssp ETTTT-EECCS--SCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSC
T ss_pred ECCCC-cEEEc--ccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCC
Confidence 54433 22211 1235678888897 6689999888888999998877666443
No 348
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.77 E-value=2.2e+02 Score=27.82 Aligned_cols=106 Identities=15% Similarity=0.091 Sum_probs=66.7
Q ss_pred ChhhHHHhhhhhhhcCccccccccccCCCChHHHHHHHhhcCchhHHHHHHHHhhcccCCCChhHHHH--HHHHHHHHHH
Q 003405 605 DPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNE--MVQIYLSEVL 682 (823)
Q Consensus 605 ~~~li~~y~~wll~~~p~~~~~if~~~~l~~~~Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~~h~~--L~~lYl~~i~ 682 (823)
-+++..+|..|+.+..|.-+.. ..-+...||.++... ..++.|+|. .+.+.+.++.
T Consensus 71 PL~~w~~YIkW~ee~yP~g~~~--------------------~s~L~~lLErc~~~F--~~~~rYknD~RyLklWl~Ya~ 128 (223)
T 4aez_C 71 PLQVWIDYIKWTLDNFPQGETK--------------------TSGLVTLLERCTREF--VRNPLYKDDVRYLRIWMQYVN 128 (223)
T ss_dssp THHHHHHHHHHHHHHCTTCCCT--------------------TTCHHHHHHHHHHHT--TTCGGGTTCHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhCcCCCcc--------------------hhhHHHHHHHHHHHh--cccccccCCHHHHHHHHHHHH
Confidence 3677889999999988754310 112335566665432 134455553 3444443321
Q ss_pred HHhhhhhhhcccCcccchHHHHHHHHHhhhcCCCChHHHhccCCCC-chhhHHHHHhhccccHHHHHHHHHHHhCC
Q 003405 683 DWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPAD-ALYEERAILLGKMNQHELALSLYVHKVFL 757 (823)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~r~kLl~fL~~s~~Yd~~~~L~~~~~~-~l~~e~~~Ll~klg~h~~AL~ilv~~L~D 757 (823)
- ......+..||.... +.... .|+++-|.+|...|++++|-.+|-..+..
T Consensus 129 ~----------------~~~p~~if~~L~~~~---------IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 129 Y----------------IDEPVELFSFLAHHH---------IGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp T----------------CSCHHHHHHHHHHTT---------CSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred c----------------cCCHHHHHHHHHHCC---------cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 0 012467778887763 44444 48889999999999999999999877644
No 349
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=45.24 E-value=10 Score=32.93 Aligned_cols=56 Identities=13% Similarity=-0.019 Sum_probs=38.0
Q ss_pred HHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc-CCCH
Q 003405 309 QLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS-QVDI 369 (823)
Q Consensus 309 ~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~-~~dP 369 (823)
.+...|++++|+..++.....++ .....+...|..+...|+|++|...|.++ ..+|
T Consensus 60 ~~~~~g~~~~A~~~~~~al~l~P-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 60 TQAENEKDGLAIIALNHARMLDP-----KDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 44678999999998876421111 12235667788999999999999999873 3444
No 350
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=45.21 E-value=2.6e+02 Score=28.34 Aligned_cols=198 Identities=10% Similarity=0.039 Sum_probs=105.2
Q ss_pred cEEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEE--cCeEEEEEEcCC---CceeEeeeecC-CCCceEEEe--cC
Q 003405 96 SIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHDGG---RGFVEVKDFGV-PDTVKSMSW--CG 167 (823)
Q Consensus 96 ~l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~~~---~~f~~~kei~~-~~~~~~l~~--~~ 167 (823)
.|...++..-+....++..++...++++...+.|.++- .++|..+...+. .....+ +.. -..|.+|++ .+
T Consensus 11 ~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~--~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--ISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE--ECSSCSCCCEEEEETTT
T ss_pred eEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE--EeCCCCCcCEEEEeecC
Confidence 47777776544333345667778888888777888873 456655555431 111111 111 135677776 47
Q ss_pred CeEEEEEc--CceEEEEcCCCCeeeccCCCCCCCCEEEEcc-CCeEEEEeC----CeEEEEcCCCccccCCceee--cCC
Q 003405 168 ENICIAIR--KGYMILNATNGALSEVFPSGRIGPPLVVSLL-SGELLLGKE----NIGVFVDQNGKLLQADRICW--SEA 238 (823)
Q Consensus 168 ~~i~v~~~--~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~-~~EfLL~~~----~~gvfv~~~G~~~~~~~i~w--~~~ 238 (823)
+.|+|+.. +...++|+.......+...+ ...|.-+.++ .+..|.+.+ .....++.+|... ..+.- -..
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~--~~~~~~~~~~ 165 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTLFREN-GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVTENIQW 165 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECT-TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--EEEECSSCSC
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEEEECC-CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe--EEEEECCCCC
Confidence 78999876 45777888765555555422 2356655553 344444332 2334467777532 11110 124
Q ss_pred CcEEEEe--CCEEEEEeC--CeEEEEEccCCCceeEEEee-----CCcccccccCCeEEEec--cceEEEeec
Q 003405 239 PIAVIIQ--KPYAIALLP--RRVEVRSLRVPYALIQTIVL-----QNVRHLIPSSNAVVVAL--ENSIFGLFP 300 (823)
Q Consensus 239 P~~v~~~--~PYll~~~~--~~ieV~~l~~~~~lvQ~i~l-----~~~~~l~~~~~~v~v~s--~~~I~~l~~ 300 (823)
|..+++. .-.|+.... +.|++.++. +...+++.- ..+.-+.-.++.+|++. .+.|+++.+
T Consensus 166 P~gla~d~~~~~lY~~D~~~~~I~~~d~d--g~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 166 PNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred ceEEEEeccCCEEEEEECCCCeEEEEecC--CCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence 7778876 356666654 468887763 333333321 11112222345666653 456777665
No 351
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=45.19 E-value=14 Score=33.32 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=37.6
Q ss_pred HHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 308 VQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 308 ~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
..+...|+|++|+..++.....++ .-...+...|..++..|+|++|...|.+
T Consensus 63 ~~~~~~g~~~~A~~~~~~al~l~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 63 ACRQAMGQYDLAIHSYSYGAVMDI-----XEPRFPFHAAECLLQXGELAEAESGLFL 114 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-----TCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCC-----CCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345688999999999876411110 1123456679999999999999999986
No 352
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=44.87 E-value=18 Score=36.64 Aligned_cols=61 Identities=15% Similarity=0.019 Sum_probs=42.5
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc-CCCH
Q 003405 304 GAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS-QVDI 369 (823)
Q Consensus 304 ~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~-~~dP 369 (823)
......+...|+|++|+..++.....+ .....++...|..++..|+|++|...|.++ .++|
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 69 (281)
T 2c2l_A 8 KEQGNRLFVGRKYPEAAACYGRAITRN-----PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 345567788999999999987531111 012345667788899999999999999874 3444
No 353
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=44.67 E-value=19 Score=33.93 Aligned_cols=53 Identities=15% Similarity=0.111 Sum_probs=39.0
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
...+...|+|++|+..++.....+ ......+...|..++..|+|++|...|.+
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKID-----KNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 334568899999999987642111 12234566779999999999999999986
No 354
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=44.48 E-value=41 Score=28.06 Aligned_cols=57 Identities=9% Similarity=0.012 Sum_probs=39.3
Q ss_pred HHHHhcCCHHHHHHHhhhCCC---cchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 308 VQLTASGDFEEALALCKLLPP---EDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 308 ~~Ll~~~~~e~Al~L~~~~~~---~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
..+++.|.|+.|+.-.+.... .+.. .......++...|..+|..|++++|..++.++
T Consensus 13 ~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 13 KVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 456788888888777754210 0000 01134578889999999999999999998863
No 355
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=44.12 E-value=2.7e+02 Score=28.22 Aligned_cols=192 Identities=9% Similarity=0.093 Sum_probs=99.4
Q ss_pred cEEEEEEe--CCEEEEEe-CCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE-
Q 003405 18 KIDAVASY--GLKILLGC-SDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL- 93 (823)
Q Consensus 18 ~I~ci~~~--~~~L~vGT-~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l- 93 (823)
...+++.. ++.||+.. ..|.|+.++..+..... ... ..+. ..-.....|.+.+..+.+.+.
T Consensus 31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~------------~~~--~~~~-~~~~~p~glavd~~~~~ly~~d 95 (316)
T 1ijq_A 31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS------------SYD--TVIS-RDIQAPDGLAVDWIHSNIYWTD 95 (316)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------CE--EEEC-SSCSCCCEEEEETTTTEEEEEE
T ss_pred ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCc------------ccE--EEEe-CCCCCcCEEEEeecCCeEEEEE
Confidence 45666665 56888775 45888888765421000 000 0111 111234677777544444333
Q ss_pred eC-c-EEEEeCCCCcccccc-cCCCCcEEEEeeCCCceEEEEEc---CeEEEEEEcCCCceeEeeeecCCCCceEEEec-
Q 003405 94 SE-S-IAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFARQ---KRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC- 166 (823)
Q Consensus 94 ~d-~-l~~~~L~~l~~~~~i-~~~kg~~~fa~~~~~~~l~V~~k---kki~l~~~~~~~~f~~~kei~~~~~~~~l~~~- 166 (823)
.. + |.++++..-.....+ ........+++++..+.+.++-- .+|..+..++. ..+.+-.-. -..|.+|+|.
T Consensus 96 ~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~-~~~P~gla~d~ 173 (316)
T 1ijq_A 96 SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTEN-IQWPNGITLDL 173 (316)
T ss_dssp TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSS-CSCEEEEEEET
T ss_pred CCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECC-CCCceEEEEec
Confidence 33 2 888887542211111 13345678889987888888743 34444444422 112111111 2468899997
Q ss_pred -CCeEEEEEcC--ceEEEEcCCCCeeeccCCC-CCCCCEEEEccCCeEEEE--eCCeEEEEcC-CCc
Q 003405 167 -GENICIAIRK--GYMILNATNGALSEVFPSG-RIGPPLVVSLLSGELLLG--KENIGVFVDQ-NGK 226 (823)
Q Consensus 167 -~~~i~v~~~~--~y~lidl~~~~~~~L~~~~-~~~~p~i~~~~~~EfLL~--~~~~gvfv~~-~G~ 226 (823)
++.|+|+... ....+|++.+....+...+ ....|.-+.+.++.+.++ .++....++. +|.
T Consensus 174 ~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 174 LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred cCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence 6789999874 4667888755444444322 224576666554444432 1234445564 565
No 356
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=43.57 E-value=24 Score=29.54 Aligned_cols=55 Identities=18% Similarity=0.334 Sum_probs=39.3
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
....+...|++++|+.+++.....+. .........|..++..+++++|...|.++
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 61 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDP-----RSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCC-----cchhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34566788999999999876421110 11234556788889999999999999874
No 357
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=43.46 E-value=2.1e+02 Score=26.84 Aligned_cols=151 Identities=11% Similarity=0.039 Sum_probs=80.5
Q ss_pred cHHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCcccccccCChHHHHHHhhcCCCCChhhHHHhhhhhhhcCccccccc
Q 003405 548 HYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIEL 627 (823)
Q Consensus 548 ~~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~~~~~~~~~~i~yL~~L~~~~~~li~~y~~wll~~~p~~~~~i 627 (823)
.+..++..|...|++++|++.+.+...-... ..+. .+++ +.+--.++....++.+|..+.-.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------~~~~---~~~~--~~~~a~~~~~~~~~~~~~~~~~~ 142 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------------ADIL---TKLR--NAEKELKKAEAEAYVNPEKAEEA 142 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------------HHHH---HHHH--HHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------------hHHH---HHHh--HHHHHHHHHHHHHHcCcchHHHH
Confidence 4567899999999999999999987643211 0000 0001 11111122222333333211100
Q ss_pred cccCCCChHHHHHHHhhcCchhHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccchHHHHHHH
Q 003405 628 FLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLL 707 (823)
Q Consensus 628 f~~~~l~~~~Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kLl 707 (823)
+ ....-++.......+..+++..+... ..++..+..++..|... +.......-+.
T Consensus 143 ~-------~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~----------------~~~~~A~~~~~ 197 (258)
T 3uq3_A 143 R-------LEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKL----------------MSFPEAIADCN 197 (258)
T ss_dssp H-------HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHH
T ss_pred H-------HHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh----------------CCHHHHHHHHH
Confidence 0 01111222233567788888887642 34677888888888753 01111222222
Q ss_pred HHhhhcCCCChHHHhccCCCC-chhhHHHHHhhccccHHHHHHHHHH
Q 003405 708 SALESISGYNPEVLLKRLPAD-ALYEERAILLGKMNQHELALSLYVH 753 (823)
Q Consensus 708 ~fL~~s~~Yd~~~~L~~~~~~-~l~~e~~~Ll~klg~h~~AL~ilv~ 753 (823)
..++. -+.+ ..+...+.++.++|++++|+..+-.
T Consensus 198 ~al~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 198 KAIEK------------DPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHh------------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 22222 2332 3456778889999999999988765
No 358
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=43.45 E-value=23 Score=37.72 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=43.1
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCcchHh-----------hhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc-CCCH
Q 003405 304 GAQIVQLTASGDFEEALALCKLLPPEDASL-----------RAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS-QVDI 369 (823)
Q Consensus 304 ~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~-----------~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~-~~dP 369 (823)
......+++.|+|++|+...+......... .......++...|..++..++|++|..+|.++ .++|
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 344556678999999998886542100000 01122356667899999999999999999874 3444
No 359
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=42.89 E-value=23 Score=33.36 Aligned_cols=55 Identities=13% Similarity=0.045 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 305 ~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
.....+...|++++|+..++.....+ ......+...|..++..|+|++|...|.+
T Consensus 42 ~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 96 (213)
T 1hh8_A 42 NIGCMYTILKNMTEAEKAFTRSINRD-----KHLAVAYFQRGMLYYQTEKYDLAIKDLKE 96 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----ccchHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 34455678999999999987642111 12234567789999999999999999987
No 360
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=42.11 E-value=1.2e+02 Score=34.29 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=47.8
Q ss_pred cccccccC--CCCcEEEEEEeC--------CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCC---
Q 003405 7 DSLELISN--CSPKIDAVASYG--------LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGF--- 73 (823)
Q Consensus 7 ~~~~l~~~--~~~~I~ci~~~~--------~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~--- 73 (823)
...|++-. .....+.|++.. .-+|+||++|.|+...+....+... ....++..++-|
T Consensus 391 ~~~Pll~~~~~~y~lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~----------~~~~~iEEi~vf~~~ 460 (565)
T 3oky_B 391 INRPWFLRTMVRYRLTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFL----------NGSLFLEEMNVYNPE 460 (565)
T ss_dssp GGSCSEEECSSSSCEEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----C----------CCCEEEEEEECCCHH
T ss_pred cceeEEEEcCCccceEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccc----------cccEEEEEEEEeccc
Confidence 34555532 334567777662 3589999999998776543211100 001112222222
Q ss_pred -------CCCCeeEEEEecccCceeeEeC-cEEEEeC
Q 003405 74 -------SKKPILSMEVLASRQLLLSLSE-SIAFHRL 102 (823)
Q Consensus 74 -------~k~~I~qI~~~~~~~~Ll~l~d-~l~~~~L 102 (823)
...+|..|.+.+..+.|.+.++ +|.=..+
T Consensus 461 ~~~~~~~~~~pI~~L~ls~~~~~LYV~s~~~V~qVPl 497 (565)
T 3oky_B 461 KCSYDGVEDKRIMGMQLDRASGSLYVAFSTCVIKVPL 497 (565)
T ss_dssp HHCBTTBCCCCCCEEEEEGGGTEEEEECSSCEEEEES
T ss_pred cccccccCCCceEEEEEcCCCCEEEEEecCeEEEeeh
Confidence 1468888888888888888877 4443333
No 361
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=41.91 E-value=29 Score=32.19 Aligned_cols=59 Identities=25% Similarity=0.184 Sum_probs=38.8
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCc---chHhhhhcHHHHH----HHHHHHHHccCCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLPPE---DASLRAAKEGSIH----IRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~---~~~~~~~~~~~i~----~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.-..+...|+|++|+.-++..... ..++.+ .....+ -..|..|...|+|++|+..|.++
T Consensus 63 ~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 63 LAEALAGLRSFDEALHSADKALHYFNRRGELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 344567889999999988653111 000011 122334 56689999999999999999874
No 362
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=41.44 E-value=3.4e+02 Score=28.55 Aligned_cols=135 Identities=11% Similarity=0.146 Sum_probs=78.6
Q ss_pred EEEEEe-CCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccC-------ceeeEe-C--c
Q 003405 28 KILLGC-SDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQ-------LLLSLS-E--S 96 (823)
Q Consensus 28 ~L~vGT-~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~-------~Ll~l~-d--~ 96 (823)
.++||| +.|-|++|++.+.. .+. +....++.+.+.+... ++++-. + .
T Consensus 41 s~ii~t~k~~gL~Vydl~G~~-------------------l~~---~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~ 98 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSLDGKM-------------------LHS---YNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGK 98 (355)
T ss_dssp CEEEEEETTTEEEEEETTSCE-------------------EEE---ECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTC
T ss_pred cEEEEEcCCCCEEEEcCCCcE-------------------EEE---ccCCCcccEEEecccccCCceEeEEEEeCCCCCC
Confidence 568887 45679999986421 222 1224677777777543 333322 2 2
Q ss_pred --EEEEeCC-CCcccccc--------cCCCCcEEEEe--eCCCce--EEEE-EcCeEEEEEEcC---C-CceeEeeeecC
Q 003405 97 --IAFHRLP-NLETIAVL--------TKAKGANVYSW--DDRRGF--LCFA-RQKRVCIFRHDG---G-RGFVEVKDFGV 156 (823)
Q Consensus 97 --l~~~~L~-~l~~~~~i--------~~~kg~~~fa~--~~~~~~--l~V~-~kkki~l~~~~~---~-~~f~~~kei~~ 156 (823)
|.+|.++ ...++..+ ...+.+.-+|+ ++..+. ++|. ...++..|++.. + -.-+.++++.+
T Consensus 99 n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l 178 (355)
T 3amr_A 99 NTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM 178 (355)
T ss_dssp CEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC
T ss_pred CeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC
Confidence 8999873 22222222 12244444666 554443 4554 334566777742 2 13456788999
Q ss_pred CCCceEEEec--CCeEEEEEc-CceEEEEcC
Q 003405 157 PDTVKSMSWC--GENICIAIR-KGYMILNAT 184 (823)
Q Consensus 157 ~~~~~~l~~~--~~~i~v~~~-~~y~lidl~ 184 (823)
+..|-++... ...|+++-. .+...|+..
T Consensus 179 gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 179 NSQTEGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp SSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred CCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence 9999988886 357998887 566667754
No 363
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=41.27 E-value=53 Score=38.10 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCC----cchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 305 AQIVQLTASGDFEEALALCKLLPP----EDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 305 ~qI~~Ll~~~~~e~Al~L~~~~~~----~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
.....-+..|++++|+..++.... ...... ......+...|..++..|+|++|...|.+
T Consensus 396 a~~~~a~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 458 (681)
T 2pzi_A 396 ASVLQATVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDD 458 (681)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHhhcccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 333333688999999998876420 000000 11234566779999999999999999986
No 364
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=40.73 E-value=39 Score=34.04 Aligned_cols=55 Identities=20% Similarity=0.264 Sum_probs=40.9
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
....+...|++++|+..++.....+. .....+...|..++..|+|++|...|.++
T Consensus 44 la~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 44 RALCYLKMQQPEQALADCRRALELDG-----QSVKAHFFLGQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556789999999999986432221 12245667799999999999999999873
No 365
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=40.73 E-value=35 Score=31.49 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=32.7
Q ss_pred HHhcCCHHHHHH---HhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 310 LTASGDFEEALA---LCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 310 Ll~~~~~e~Al~---L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
++..|+|++|.. ++...+ .....+....|..++..|+|++|..+|.++
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 52 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHP--------ATASGARFMLGYVYAFMDRFDEARASFQAL 52 (203)
T ss_dssp -----CHHHHHHHHHHHHTST--------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCCh--------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 467899999999 553321 123456777899999999999999999874
No 366
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=40.43 E-value=46 Score=38.64 Aligned_cols=84 Identities=21% Similarity=0.317 Sum_probs=46.6
Q ss_pred cccccccccCCCCcEEEEEEe--CC--EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCC-CCCCe-
Q 003405 5 AFDSLELISNCSPKIDAVASY--GL--KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGF-SKKPI- 78 (823)
Q Consensus 5 af~~~~l~~~~~~~I~ci~~~--~~--~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~-~k~~I- 78 (823)
+....|++-......++|++. ++ -+|+||++|.|+...+...... . .+...+.-+ ...||
T Consensus 387 pi~~~Pll~~~~~~lT~VaV~~~~~~tVlFLGT~~G~l~Kv~~~~~~~~-------------~-~~~ee~~v~~~~~pI~ 452 (681)
T 3oky_A 387 PVEGLTLYTTSRDRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHG-------------G-VQYEMVSVFKDGSPIL 452 (681)
T ss_dssp CEECEEEEEESSSCBCCCEEEEETTEEEEEEEBTTSEEEEEECCCTTTC-------------C-EEEEEEECCTTCCCCC
T ss_pred cccccceEEecCcceEEEEEEecCceEEEEEECCCceEEEEEECCCCCc-------------e-EEEEEeeeccCCCcee
Confidence 334444543333345554444 33 5899999999998765542110 1 112232223 34677
Q ss_pred eEEEEecccCceeeEeC-cEEEEeC
Q 003405 79 LSMEVLASRQLLLSLSE-SIAFHRL 102 (823)
Q Consensus 79 ~qI~~~~~~~~Ll~l~d-~l~~~~L 102 (823)
..|.+.+..+.|.+.++ +|.=..+
T Consensus 453 ~~l~l~~~~~~Lyv~s~~~V~qvPl 477 (681)
T 3oky_A 453 RDMAFSINQLYLYVMSERQVTRVPV 477 (681)
T ss_dssp SCCEECTTSSEEEEECSSEEEEEES
T ss_pred eeeEEcCCCCEEEEEecCEEEEEEh
Confidence 57877777778888777 4443333
No 367
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=40.32 E-value=98 Score=34.39 Aligned_cols=71 Identities=20% Similarity=0.210 Sum_probs=42.8
Q ss_pred cEEEEEEe------C--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCC-CCCCeeEEEEecccC
Q 003405 18 KIDAVASY------G--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGF-SKKPILSMEVLASRQ 88 (823)
Q Consensus 18 ~I~ci~~~------~--~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~-~k~~I~qI~~~~~~~ 88 (823)
..++|++. + .-+|+||++|.|+...+........ ... .+...++-+ ...||..|.+.+..+
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~---------~~~-~~~eei~v~~~~~pI~~m~l~~~~~ 474 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHD---------LEE-VLLEEMTVFREPTTISAMELSTKQQ 474 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC---------------------CCEEECCSSSCCCCCEEEEETTTT
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccc---------cce-EEEEEEeecCCCCccceEEEcCCCC
Confidence 56776665 2 2489999999999887653221000 000 112233333 257999999999888
Q ss_pred ceeeEeC-cEE
Q 003405 89 LLLSLSE-SIA 98 (823)
Q Consensus 89 ~Ll~l~d-~l~ 98 (823)
.|.+.++ +|.
T Consensus 475 ~Lyv~s~~~V~ 485 (495)
T 1q47_A 475 QLYIGSTAGVA 485 (495)
T ss_dssp EEEEEBSSCEE
T ss_pred EEEEEECCeEE
Confidence 9999888 443
No 368
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=39.95 E-value=34 Score=29.76 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=38.3
Q ss_pred HHHhcCCHHHHHHHhhhCCCcchHhh-hhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 309 QLTASGDFEEALALCKLLPPEDASLR-AAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 309 ~Ll~~~~~e~Al~L~~~~~~~~~~~~-~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.+...|++++|+..++.......... ......+....|..++..|+|++|..+|.++
T Consensus 18 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 18 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44678999999998875311000000 0112346677899999999999999999874
No 369
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=39.18 E-value=1.7e+02 Score=25.76 Aligned_cols=98 Identities=14% Similarity=0.098 Sum_probs=60.0
Q ss_pred chhHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhhhhhhhcccCcccchHHHHHHHHHhhhcCCCChHHHhccCC
Q 003405 647 PSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLP 726 (823)
Q Consensus 647 ~~~~~~YLE~li~~~~~~~~~~~h~~L~~lYl~~i~~~~~~~~~~~~~~~~~~~~~r~kLl~fL~~s~~Yd~~~~L~~~~ 726 (823)
.+.++.|++..+..+ ..++..|..|+..|... +.......-+. ++++.-|
T Consensus 47 ~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~----------------~~~~~A~~~~~------------~al~~~p 96 (150)
T 4ga2_A 47 YDLAKKYICTYINVQ--ERDPKAHRFLGLLYELE----------------ENTDKAVECYR------------RSVELNP 96 (150)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHH------------HHHHHCT
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc----------------CchHHHHHHHH------------HHHHhCC
Confidence 456778888887643 35788899999988763 00111122222 2333344
Q ss_pred CC-chhhHHHHHhhccccHHHHHHHHHH---HhCCCchhHHHHHHHHhcCCC
Q 003405 727 AD-ALYEERAILLGKMNQHELALSLYVH---KVFLINQPVFLLIRRMAMDIK 774 (823)
Q Consensus 727 ~~-~l~~e~~~Ll~klg~h~~AL~ilv~---~L~D~~~a~~~~l~~~y~~~~ 774 (823)
.+ ..+...+.+|.++|++++|...++. ++.--++.+|...-+++...+
T Consensus 97 ~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 97 TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 43 3566778889999999888877654 344445667766666665543
No 370
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=38.93 E-value=18 Score=35.53 Aligned_cols=58 Identities=16% Similarity=0.104 Sum_probs=42.0
Q ss_pred hhHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 303 LGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 303 ~~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
+-.....++..|+|++|+..++.....++ ....+....|..++..|+|++|+..|.++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 63 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKY-----NSPYIYNRRAVCYYELAKYDLAQKDIETY 63 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTC-----CCSTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34566788899999999999976421111 11124556688999999999999999873
No 371
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=38.34 E-value=35 Score=29.64 Aligned_cols=59 Identities=20% Similarity=0.124 Sum_probs=39.2
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhh-hhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLR-AAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~-~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
...+...|++++|+..++.......... ......+....|..++..|+|++|..+|.++
T Consensus 56 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 56 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445688999999988876310000000 0122455667799999999999999999873
No 372
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=38.04 E-value=64 Score=36.18 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=46.4
Q ss_pred ccccccCCCCcEEEEEEeC----CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCee-EEE
Q 003405 8 SLELISNCSPKIDAVASYG----LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPIL-SME 82 (823)
Q Consensus 8 ~~~l~~~~~~~I~ci~~~~----~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~-qI~ 82 (823)
..|++.......++|++.. .-+|+||++|.|+...+..+.. ...++.. +. -...||. .|.
T Consensus 378 ~~Pll~~~~~~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~------------~~~~ee~-~v--~~~~pi~~~l~ 442 (528)
T 3ol2_B 378 ATPILEWPGIQLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSD------------GHPYSTQ-SI--QQGSAVSRDLT 442 (528)
T ss_dssp CCCSEEETTCCEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCC------------SCCSEEE-ES--STTSCCCSCCE
T ss_pred ccceEEecCCceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCC------------eeEEeee-cc--CCCCcceeeEE
Confidence 3444433344677776553 3589999999999877643211 0112211 11 2246785 677
Q ss_pred EecccCceeeEeC-cEEEEeC
Q 003405 83 VLASRQLLLSLSE-SIAFHRL 102 (823)
Q Consensus 83 ~~~~~~~Ll~l~d-~l~~~~L 102 (823)
+.+..+.|.+.++ +|.=..+
T Consensus 443 l~~~~~~Lyv~s~~~V~~vpl 463 (528)
T 3ol2_B 443 FDGTFEHLYVMTQSTLLKVPV 463 (528)
T ss_dssp ECTTSSEEEEECSSCEEEEES
T ss_pred EecCCCEEEEEeCCEEEEEEh
Confidence 7777788888777 4443333
No 373
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=37.58 E-value=36 Score=36.19 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=39.8
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
...+++.|+|++|+..++.....+. .....+...|..++..++|++|...|.++
T Consensus 280 a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~eA~~~l~~A 333 (370)
T 1ihg_A 280 GACKLKMSDWQGAVDSCLEALEIDP-----SNTKALYRRAQGWQGLKEYDQALADLKKA 333 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHhCc-----hhHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3345688999999999976422211 12345667799999999999999999873
No 374
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=36.46 E-value=63 Score=35.27 Aligned_cols=53 Identities=11% Similarity=0.112 Sum_probs=37.3
Q ss_pred HHHhcCCHHHHHHHhhhCC-------CcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 309 QLTASGDFEEALALCKLLP-------PEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 309 ~Ll~~~~~e~Al~L~~~~~-------~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.+...|+|++|+.+.+... ..+.+ .........|..++.+|+|++|..++.++
T Consensus 349 ~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp----~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 349 VCLYMQDWEGALKYGQKIIKPYSKHYPVYSL----NVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh----HHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3456899999999987631 11111 22344556789999999999999999874
No 375
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=36.43 E-value=2.9e+02 Score=26.30 Aligned_cols=27 Identities=15% Similarity=-0.059 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc
Q 003405 549 YTALLELYKSNARHREALKLLHELVEE 575 (823)
Q Consensus 549 ~~~L~~ly~~~g~~~~AL~ll~~l~~~ 575 (823)
+..++..|...|++++|++.+.+....
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~ 72 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAI 72 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHc
Confidence 457889999999999999999987643
No 376
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=36.31 E-value=2.3e+02 Score=29.99 Aligned_cols=89 Identities=11% Similarity=0.104 Sum_probs=48.6
Q ss_pred HHhccCCCC-chhhHHHHHhhccc--cHHHHHHHHHHH-hCCCchhHHHHHHHHhcCCCCCcchhhhccchhHHHHHHHH
Q 003405 720 VLLKRLPAD-ALYEERAILLGKMN--QHELALSLYVHK-VFLINQPVFLLIRRMAMDIKPLVTEHEIKHINWRVLQATII 795 (823)
Q Consensus 720 ~~L~~~~~~-~l~~e~~~Ll~klg--~h~~AL~ilv~~-L~D~~~a~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (823)
+++.+-|.+ ..+.-+..+|.+.| ++++|++.+-.- +..-...++..|..+|...+.... .+..+ -+ ...+
T Consensus 265 ~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~-~~~~~----~~-~~A~ 338 (382)
T 2h6f_A 265 EMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC-DNKED----IL-NKAL 338 (382)
T ss_dssp HHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC-SSHHH----HH-HHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc-cchHH----HH-HHHH
Confidence 455555554 35567777888888 689999877442 122234566777888876421000 00000 00 1123
Q ss_pred HHHHHHh-hhhCCCccceeee
Q 003405 796 KLFFSSL-LRLMPSRSYIWKG 815 (823)
Q Consensus 796 ~~~~~~~-~~~~~~~~~~~~~ 815 (823)
+. +..+ ..+-|.|.-.|..
T Consensus 339 ~~-~~~l~~~~DP~r~~~w~~ 358 (382)
T 2h6f_A 339 EL-CEILAKEKDTIRKEYWRY 358 (382)
T ss_dssp HH-HHHHHHTTCGGGHHHHHH
T ss_pred HH-HHHHHHHhCchhHHHHHH
Confidence 33 3456 6778888777753
No 377
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=35.99 E-value=4.3e+02 Score=28.21 Aligned_cols=138 Identities=10% Similarity=0.044 Sum_probs=74.5
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC--c-----EE
Q 003405 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE--S-----IA 98 (823)
Q Consensus 26 ~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d--~-----l~ 98 (823)
+++||+....+.|..++..... +...... ...-..|.+.+..+.|++... + +.
T Consensus 149 ~g~Lyv~d~~~~I~~id~~~~~------------------v~~~~~~--~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~ 208 (430)
T 3tc9_A 149 HNHLYLVGEQHPTRLIDFEKEY------------------VSTVYSG--LSKVRTICWTHEADSMIITNDQNNNDRPNNY 208 (430)
T ss_dssp EEEEEEEEBTEEEEEEETTTTE------------------EEEEECC--CSCEEEEEECTTSSEEEEEECCSCTTSEEEE
T ss_pred CCeEEEEeCCCcEEEEECCCCE------------------EEEEecC--CCCcceEEEeCCCCEEEEEeCCCCcccceEE
Confidence 5789998887888888754311 1111111 245667888888774544432 1 22
Q ss_pred EEeC-CCCcccccccCCCCcEEEEeeCCCceEEEEE--cCeEEEEEEcCCCceeEeeeecCCCCceEEEec--CCeEEEE
Q 003405 99 FHRL-PNLETIAVLTKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GENICIA 173 (823)
Q Consensus 99 ~~~L-~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~--kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~--~~~i~v~ 173 (823)
.+.- ..+.....+...++.+.++++++.+.|.|+- ..+|..|....+ ....+-...-...|.+|+|. |+.++|+
T Consensus 209 ~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~-~~~~~~~~~~~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 209 ILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ-ETTPLFTIQDSGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp EEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT-EEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred EEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC-cEEEEEEcCCCCcceeEEEcCCCCEEEEE
Confidence 2221 1222112333456677788888677888874 345544444422 22111111112358899997 5568888
Q ss_pred EcC--ceEEEEcC
Q 003405 174 IRK--GYMILNAT 184 (823)
Q Consensus 174 ~~~--~y~lidl~ 184 (823)
... ....++.+
T Consensus 288 d~~~~~I~~~~~d 300 (430)
T 3tc9_A 288 VVNQHYILRSDYD 300 (430)
T ss_dssp ETTTTEEEEEEEE
T ss_pred ECCCCEEEEEeCC
Confidence 764 34445544
No 378
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=35.37 E-value=4.2e+02 Score=27.95 Aligned_cols=116 Identities=14% Similarity=0.065 Sum_probs=60.2
Q ss_pred CCeeEEEEecccCceeeEeC--c-EEEEeCCCCcc--ccc--ccCCCCcE---EEEeeCCCceEEEEEcCeEEEEEEcCC
Q 003405 76 KPILSMEVLASRQLLLSLSE--S-IAFHRLPNLET--IAV--LTKAKGAN---VYSWDDRRGFLCFARQKRVCIFRHDGG 145 (823)
Q Consensus 76 ~~I~qI~~~~~~~~Ll~l~d--~-l~~~~L~~l~~--~~~--i~~~kg~~---~fa~~~~~~~l~V~~kkki~l~~~~~~ 145 (823)
..+..+.+.|..+.|++ +| + |..|+..+-.. ... .....+.. .++++++.+.+.|+-...=.|++++.+
T Consensus 219 ~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~ 297 (409)
T 3hrp_A 219 GKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD 297 (409)
T ss_dssp SCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred CCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC
Confidence 44567778885566666 55 3 88888754321 100 11112223 788888667887774432234444422
Q ss_pred CceeEeeeec-------------CCCCceEEEecC-CeEEEEEc-C--ceEEEEcCCCCeeecc
Q 003405 146 RGFVEVKDFG-------------VPDTVKSMSWCG-ENICIAIR-K--GYMILNATNGALSEVF 192 (823)
Q Consensus 146 ~~f~~~kei~-------------~~~~~~~l~~~~-~~i~v~~~-~--~y~lidl~~~~~~~L~ 192 (823)
.....+-.-. .-..|.+|++.. ..|+|+.. . ....+|+.+|.+..+.
T Consensus 298 g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 298 GECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp CCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 1221111000 012488999873 34888876 3 3455666666554443
No 379
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=35.34 E-value=32 Score=35.99 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=39.6
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
...++..|+|++|+..++.....+. .....+...|..++..|+|++|...|.++
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEEE-----KNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445688999999999876421111 12345667799999999999999999985
No 380
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=34.81 E-value=51 Score=33.11 Aligned_cols=60 Identities=12% Similarity=0.064 Sum_probs=39.9
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCC---CcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 304 GAQIVQLTASGDFEEALALCKLLP---PEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 304 ~~qI~~Ll~~~~~e~Al~L~~~~~---~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
..++..++..|+|++|+..++... ...... ......+...|..+...|+|++|+.+|.++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 141 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF--QQFLQWQYYVAAYVLKKVDYEYCILELKKL 141 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHH--HHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhH--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 456777889999999999886421 111110 011223344677788999999999999873
No 381
>4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens}
Probab=34.70 E-value=72 Score=35.77 Aligned_cols=31 Identities=16% Similarity=0.075 Sum_probs=22.4
Q ss_pred CCcEEEEEEeC--C--EEEEEeCCCcEEEEcCCCC
Q 003405 16 SPKIDAVASYG--L--KILLGCSDGSLKIYSPGSS 46 (823)
Q Consensus 16 ~~~I~ci~~~~--~--~L~vGT~~G~l~~y~~~~~ 46 (823)
+..+++|++.. + -+||||++|.|+...+...
T Consensus 404 ~~~~T~iav~~~~~~tV~FlGT~~G~l~Kv~~~~~ 438 (527)
T 4fww_A 404 PVQVTALYVTRLDNVTVAHMGTMDGRILQVELVRS 438 (527)
T ss_dssp TCCEEEEEEEEETTEEEEEEEETTSEEEEEECSCC
T ss_pred ceEEEEEEEeccCCEEEEEEECCCCeEEEEEEcCC
Confidence 34677766553 3 5899999999998876543
No 382
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=34.39 E-value=40 Score=27.83 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=28.9
Q ss_pred HHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 316 FEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 316 ~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
.++|..+++.-...|+ +--+.....|..+|.+|+|++|+.+|.+
T Consensus 25 ~~~A~~~l~~AL~~dp-----~~~rA~~~lg~~~~~~g~y~~Ai~~w~~ 68 (93)
T 3bee_A 25 TDEVSLLLEQALQLEP-----YNEAALSLIANDHFISFRFQEAIDTWVL 68 (93)
T ss_dssp CHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5677666654211111 1123345569999999999999999987
No 383
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=34.38 E-value=72 Score=36.87 Aligned_cols=77 Identities=17% Similarity=0.115 Sum_probs=45.2
Q ss_pred CCcEEEEEEeC--------CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCC-CCCCeeEEEEecc
Q 003405 16 SPKIDAVASYG--------LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGF-SKKPILSMEVLAS 86 (823)
Q Consensus 16 ~~~I~ci~~~~--------~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~-~k~~I~qI~~~~~ 86 (823)
....+.|++.. .-+|+||++|.|+...+....... .....++...+-+ ...+|..|.+.+.
T Consensus 411 ~~~lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~----------~~~~~~leEi~v~~~~~pI~~L~ld~~ 480 (667)
T 4gz8_A 411 NYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWH----------DLEEVLLEEMTVFREPTTISAMELSTK 480 (667)
T ss_dssp SCCEEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC----------------CEEEEEEEEECSSSCCCCCEEEEETT
T ss_pred ccceeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCCCCcc----------ccceEEEEEEeecCCCceeeeEEEcCC
Confidence 34566666531 248999999999876543322110 0001122233333 2568999999999
Q ss_pred cCceeeEeC-cEEEEeC
Q 003405 87 RQLLLSLSE-SIAFHRL 102 (823)
Q Consensus 87 ~~~Ll~l~d-~l~~~~L 102 (823)
.+.|.+.++ +|.=..+
T Consensus 481 ~~~LYV~t~~~V~kVPl 497 (667)
T 4gz8_A 481 QQQLYIGSTAGVAQLPL 497 (667)
T ss_dssp TTEEEEEBSSCEEEEES
T ss_pred CCEEEEEECCEEEEEEh
Confidence 999999988 4544444
No 384
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=34.38 E-value=34 Score=33.42 Aligned_cols=53 Identities=17% Similarity=0.077 Sum_probs=34.5
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
...+...|++++|+..++.....+ .....++...|..++..|+|++|...|.+
T Consensus 50 ~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 102 (275)
T 1xnf_A 50 GVLYDSLGLRALARNDFSQALAIR-----PDMPEVFNYLGIYLTQAGNFDAAYEAFDS 102 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHcC-----CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444567788888888876531100 01224556677888888888888888876
No 385
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=34.28 E-value=29 Score=31.95 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=36.1
Q ss_pred HHHhcC---CHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc-CCCH
Q 003405 309 QLTASG---DFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS-QVDI 369 (823)
Q Consensus 309 ~Ll~~~---~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~-~~dP 369 (823)
.|++++ .+.+|+.+++.+...+.+ ...++..=..|..++..++|++|..+|... .++|
T Consensus 41 ~Lv~S~~~~~~~~gI~lLe~ll~~~~p---~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 41 CLVRSKYNDDIRKGIVLLEELLPKGSK---EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHSCH---HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhcCCc---cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 456666 677888888765322211 011222223366679999999999999873 4555
No 386
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=34.19 E-value=27 Score=32.50 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=37.5
Q ss_pred HHHHhcCCHHHHHHHhhhC----CC---cch-HhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 308 VQLTASGDFEEALALCKLL----PP---EDA-SLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 308 ~~Ll~~~~~e~Al~L~~~~----~~---~~~-~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
..+++.|+|++|+...+.. +. .+. .... ....++.-.|..+...|+|++|+..|.++
T Consensus 19 ~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~-~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 19 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAG-FDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhcc-chHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4567889999998887652 11 000 0000 01226667789999999999999998873
No 387
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.89 E-value=1.2e+02 Score=28.28 Aligned_cols=103 Identities=10% Similarity=-0.048 Sum_probs=65.2
Q ss_pred ChhhHHHhhhhhhhcCccccccccccCCCChHHHHHHHhhcCchhHHHHHHHHhhcccCCCChhHHHH--HH---HHHHH
Q 003405 605 DPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNE--MV---QIYLS 679 (823)
Q Consensus 605 ~~~li~~y~~wll~~~p~~~~~if~~~~l~~~~Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~~h~~--L~---~lYl~ 679 (823)
-++...+|..|+.+..|..+.+ .-+...||.++... ..++.++|. .+ ..|++
T Consensus 18 PL~~w~~yIkW~e~~~p~~~~~---------------------s~L~~lLErc~~~f--~~~~~YknD~RyLklWl~ya~ 74 (164)
T 2wvi_A 18 PLDVWDRYISWTEQNYPQGGKE---------------------SNMSTLLERAVEAL--QGEKRYYSDPRFLNLWLKLGR 74 (164)
T ss_dssp THHHHHHHHHHHHHHCCC-------------------------CCHHHHHHHHHHHT--TTCGGGTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCcCCCcc---------------------chHHHHHHHHHHHh--hhhhhhccCHHHHHHHHHHHH
Confidence 3677889999999988865421 11333556655432 123445552 23 34444
Q ss_pred HHHHHhhhhhhhcccCcccchHHHHHHHHHhhhcCCCChHHHhccCCCC-chhhHHHHHhhccccHHHHHHHHHHHhCCC
Q 003405 680 EVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPAD-ALYEERAILLGKMNQHELALSLYVHKVFLI 758 (823)
Q Consensus 680 ~i~~~~~~~~~~~~~~~~~~~~~r~kLl~fL~~s~~Yd~~~~L~~~~~~-~l~~e~~~Ll~klg~h~~AL~ilv~~L~D~ 758 (823)
.. + ....+..||.... +.... .|+++-|.+|...|+.++|-.||-..+..-
T Consensus 75 ~~-------------~------~p~~if~~L~~~~---------IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 75 LC-------------N------EPLDMYSYLHNQG---------IGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HC-------------S------CHHHHHHHHHHTT---------SSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hc-------------C------CHHHHHHHHHHCC---------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 31 1 2566788888764 44444 478899999999999999999998876543
No 388
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=33.80 E-value=37 Score=27.03 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=30.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHhc---CCCHHHHHHhCCCCC
Q 003405 343 IRFAHYLFDTGSYEEAMEHFLAS---QVDITYALSLYPSIV 380 (823)
Q Consensus 343 ~~~a~~lf~~~~f~~A~~~f~~~---~~dP~~vi~Lfp~l~ 380 (823)
.+.|..|+.+|++++|+.||.++ --.|..+|..|-.-+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~tl 61 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQTL 61 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 35699999999999999999885 357888887775543
No 389
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=32.88 E-value=65 Score=35.78 Aligned_cols=57 Identities=16% Similarity=0.108 Sum_probs=37.1
Q ss_pred HHHhcCCHHHHHHHhhhCCCcc-hHhhh--hcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 309 QLTASGDFEEALALCKLLPPED-ASLRA--AKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 309 ~Ll~~~~~e~Al~L~~~~~~~~-~~~~~--~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.+-.+|+|++|+.+++...... ..+.. -.........|..+..+|+|++|..++.++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a 377 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM 377 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3457899999999886531000 00000 123445566788889999999999999873
No 390
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=32.05 E-value=1.5e+02 Score=31.45 Aligned_cols=74 Identities=5% Similarity=-0.117 Sum_probs=52.5
Q ss_pred EEeeCCCceEEEEEc---C-------eEEEEEEcCCCceeEeeeecCCCCceEEEec--CCeEEEEEc---CceEEEEcC
Q 003405 120 YSWDDRRGFLCFARQ---K-------RVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GENICIAIR---KGYMILNAT 184 (823)
Q Consensus 120 fa~~~~~~~l~V~~k---k-------ki~l~~~~~~~~f~~~kei~~~~~~~~l~~~--~~~i~v~~~---~~y~lidl~ 184 (823)
++++++..++.|+.. + .+.++... ..+.++.+.++..|.+|+|. |..+++++. +...+||+.
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~---t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS---VGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS---SCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECC---CCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 456666667777642 2 45555544 23556777788889999997 445777775 568999999
Q ss_pred CCCeeeccCCCC
Q 003405 185 NGALSEVFPSGR 196 (823)
Q Consensus 185 ~~~~~~L~~~~~ 196 (823)
+++...-++.|.
T Consensus 346 t~kvv~~I~vg~ 357 (368)
T 1mda_H 346 SDQDQSSVELDK 357 (368)
T ss_dssp SCEEEEECCCCS
T ss_pred CCcEEEEEECCC
Confidence 999887777765
No 391
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=31.78 E-value=33 Score=34.73 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=41.0
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 304 GAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 304 ~~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
-.+...+++.|++++|+.+++.....++ .-...+...|..+...|++++|...|.+
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~la~~~~~~g~~~~A~~~l~~ 176 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSN-----QNGEIGLLLAETLIALNRSEDAEAVLXT 176 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTT-----SCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCC-----cchhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3456667889999999999876421111 1224566778999999999999999886
No 392
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=31.78 E-value=48 Score=33.87 Aligned_cols=52 Identities=10% Similarity=0.138 Sum_probs=39.3
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
...|++.|+|++|..+++.....++ .+. .+-..|..++..++|++|..+|.+
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~p----~~~--~~~~~a~l~~~~~r~~dA~~~l~~ 160 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAGS----EHL--VAWMKAVVYGAAERWTDVIDQVKS 160 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTTC----HHH--HHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC----chH--HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5577899999999999988743221 122 444557889999999999999864
No 393
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=31.71 E-value=40 Score=35.12 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=39.3
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
...+++.|+|++|+..++.....++ .....+...|..++..|+|++|...|.++
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 256 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDS-----NNEKGLSRRGEAHLAVNDFELARADFQKV 256 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445688999999999976421111 12345667799999999999999999873
No 394
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=31.18 E-value=51 Score=32.70 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=41.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHh---hhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASL---RAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~---~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
....+...|++++|+.+++.....-... .......+....|..++..|+|++|..+|.++
T Consensus 33 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 95 (311)
T 3nf1_A 33 LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA 95 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455678899999999987642100000 01123456777899999999999999999863
No 395
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=31.15 E-value=41 Score=33.62 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=41.5
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.-..++..|++++|+.+++.....+.. .......+....|..++..|+|++|...|.++
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 69 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD 69 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345667899999999999764211000 01123456778899999999999999998763
No 396
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=30.99 E-value=73 Score=28.21 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=35.0
Q ss_pred HHHHhcCCHHH---HHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc-CCCH
Q 003405 308 VQLTASGDFEE---ALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS-QVDI 369 (823)
Q Consensus 308 ~~Ll~~~~~e~---Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~-~~dP 369 (823)
+.|+.++.-.+ ++.+++.+...+.+. ..+...=..|...+.-|+|++|..++... .++|
T Consensus 43 w~Lv~S~~~~d~~~GI~lLe~l~~~~~p~---~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 43 WCLVRTRYNDDIRKGIVLLEELLPKGSKE---EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHTTTSCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 34555554443 777777654333111 12222333478889999999999998762 3444
No 397
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=30.95 E-value=52 Score=33.17 Aligned_cols=58 Identities=9% Similarity=-0.038 Sum_probs=39.0
Q ss_pred HHHHHhcCCHHHHHHHhhhCC---CcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 307 IVQLTASGDFEEALALCKLLP---PEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~---~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
...+.+.|+|++|+..++... ...... .......+...|..+...|++++|...|.++
T Consensus 165 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLS-QWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSCTTT-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345578899999999987631 111100 0012335666788899999999999999884
No 398
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=30.67 E-value=36 Score=35.46 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=40.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhCC---Ccch----H--h-hhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLP---PEDA----S--L-RAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~---~~~~----~--~-~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.-..+++.|+|++|+..++... +... . . .......++...|..++..|+|++|+..|.++
T Consensus 153 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445678899999998887531 1110 0 0 00011356667799999999999999999873
No 399
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=30.56 E-value=4.6e+02 Score=28.78 Aligned_cols=25 Identities=4% Similarity=-0.059 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh
Q 003405 549 YTALLELYKSNARHREALKLLHELV 573 (823)
Q Consensus 549 ~~~L~~ly~~~g~~~~AL~ll~~l~ 573 (823)
+..++..|...|++++|++.+.+..
T Consensus 26 ~~~lg~~~~~~g~~~~A~~~~~~al 50 (568)
T 2vsy_A 26 WLMLADAELGMGDTTAGEMAVQRGL 50 (568)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678899999999999999998765
No 400
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=30.36 E-value=39 Score=33.01 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHhccHHHHHHHHHHHhhc
Q 003405 548 HYTALLELYKSNARHREALKLLHELVEE 575 (823)
Q Consensus 548 ~~~~L~~ly~~~g~~~~AL~ll~~l~~~ 575 (823)
.|..|+.+|...|++++|++.+.+...-
T Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 223 ANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3556899999999999999999987643
No 401
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=30.29 E-value=31 Score=34.85 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=35.9
Q ss_pred HHhcCCHHHHHHHhhhCCCcchHh-hhhcHH-HHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 310 LTASGDFEEALALCKLLPPEDASL-RAAKEG-SIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 310 Ll~~~~~e~Al~L~~~~~~~~~~~-~~~~~~-~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
+...|+|++|+..++......... ...... .+....|..++..|+|++|..+|.++
T Consensus 165 y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 356788888888776531000000 000111 46667799999999999999999874
No 402
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=30.25 E-value=87 Score=30.20 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=39.8
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHh--h-hhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASL--R-AAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~--~-~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
...+...|++++|+..++......... . .......+...|..++..|+|++|..+|.++
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444567899999999887642100000 0 0123456677899999999999999999873
No 403
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=30.14 E-value=89 Score=34.64 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=37.3
Q ss_pred HHHhcCCHHHHHHHhhhCC-------CcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 309 QLTASGDFEEALALCKLLP-------PEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 309 ~Ll~~~~~e~Al~L~~~~~-------~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.+...|+|++|+.+.+... ..+.+ .........|..++.+|+|++|..++.++
T Consensus 360 ~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp----~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 360 VLSYLQAYEEASHYARRMVDGYMKLYHHNNA----QLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3457899999999987531 11111 23344556788899999999999999874
No 404
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=30.13 E-value=42 Score=34.97 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 305 ~qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
..-..+...|++++|+..++.....+.. .......+....|..++..|+|++|..+|.++
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 73 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD 73 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3455678899999999999764211000 01123456777899999999999999998873
No 405
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=29.80 E-value=25 Score=31.88 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=18.1
Q ss_pred ChhHHHHHHHhcCCHHHHHHHhhh
Q 003405 302 PLGAQIVQLTASGDFEEALALCKL 325 (823)
Q Consensus 302 ~~~~qI~~Ll~~~~~e~Al~L~~~ 325 (823)
++.++|..|++.|+||+|+..+=.
T Consensus 2 ~~~~~I~~Ll~~g~~eeAf~~aL~ 25 (139)
T 2vxg_A 2 AMGDSIKQLLMAGQINKAFHQALL 25 (139)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHH
Confidence 356678888888888888877633
No 406
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=29.77 E-value=68 Score=34.09 Aligned_cols=85 Identities=13% Similarity=0.054 Sum_probs=57.2
Q ss_pred EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEE-----------cCeEEEEEEcCCCceeEeeeecCC--------
Q 003405 97 IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFAR-----------QKRVCIFRHDGGRGFVEVKDFGVP-------- 157 (823)
Q Consensus 97 l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~-----------kkki~l~~~~~~~~f~~~kei~~~-------- 157 (823)
|.++|..+.+.+.+++--+.- -++++++...+.|+. .+.|.++... ..+..+++.++
T Consensus 48 vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~---T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 48 NWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV---TFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT---TCCEEEEEEETTSCSCCBS
T ss_pred EEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC---CCCEEEEEECCCccccccC
Confidence 668888888877665443433 588898888888885 2446555554 24556777766
Q ss_pred CCceEEEec--CCeEEEEEc---CceEE--EEcCC
Q 003405 158 DTVKSMSWC--GENICIAIR---KGYMI--LNATN 185 (823)
Q Consensus 158 ~~~~~l~~~--~~~i~v~~~---~~y~l--idl~~ 185 (823)
..|..+.+. |..++|++. +...+ +|+.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 468888887 567888874 34555 67655
No 407
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=29.62 E-value=7.4e+02 Score=29.00 Aligned_cols=173 Identities=9% Similarity=-0.025 Sum_probs=93.4
Q ss_pred CCeeEEEEecccCceeeEeC--c-EEEEeCCCC----ccccccc-CCCCcEEEEeeCCCceEEEE--EcCeEEEEEEcCC
Q 003405 76 KPILSMEVLASRQLLLSLSE--S-IAFHRLPNL----ETIAVLT-KAKGANVYSWDDRRGFLCFA--RQKRVCIFRHDGG 145 (823)
Q Consensus 76 ~~I~qI~~~~~~~~Ll~l~d--~-l~~~~L~~l----~~~~~i~-~~kg~~~fa~~~~~~~l~V~--~kkki~l~~~~~~ 145 (823)
+.+..|.+.+..+.|.+.-- + |..+++..- .....+. ..++...+|++...+.|.++ ..++|.++..++.
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 34566777665555544322 2 666666532 1111122 34566778888777788887 3456766666632
Q ss_pred CceeEeeeecCCCCceEEEec--CCeEEEEEc---CceEEEEcCCCCeeeccCCCCCCCCEEEEcc-CCeEEEEeC---C
Q 003405 146 RGFVEVKDFGVPDTVKSMSWC--GENICIAIR---KGYMILNATNGALSEVFPSGRIGPPLVVSLL-SGELLLGKE---N 216 (823)
Q Consensus 146 ~~f~~~kei~~~~~~~~l~~~--~~~i~v~~~---~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~-~~EfLL~~~---~ 216 (823)
..+.+-. .--..|.+|++. ++.|+|+.. .....++++......+...+ ...|..+.++ .+..|.+.| +
T Consensus 504 -~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~-l~~P~GLavD~~~~~LYwaD~~~~ 580 (791)
T 3m0c_C 504 -KRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLH 580 (791)
T ss_dssp -SEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS-CSCEEEEEEETTTTEEEEEETTTT
T ss_pred -eEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC-CCCceEEEEecCCCeEEEEeCCCC
Confidence 1111111 112468888885 578999985 34677888766555555433 2357666654 444444433 4
Q ss_pred eEEEEcCCCccccCCceeec----CCCcEEEEeCCEEEEEe
Q 003405 217 IGVFVDQNGKLLQADRICWS----EAPIAVIIQKPYAIALL 253 (823)
Q Consensus 217 ~gvfv~~~G~~~~~~~i~w~----~~P~~v~~~~PYll~~~ 253 (823)
....++.+|.. +..+.-. ..|..+++..-+|+...
T Consensus 581 ~I~~~d~dG~~--~~~v~~~~~~l~~P~glav~~~~lYwtD 619 (791)
T 3m0c_C 581 SISSIDVNGGN--RKTILEDEKRLAHPFSLAVFEDKVFWTD 619 (791)
T ss_dssp EEEEEETTSCS--CEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred cEEEEecCCCc--eEEEecCCCccCCCCEEEEeCCEEEEEE
Confidence 56677888863 2233211 13455555555555544
No 408
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=29.44 E-value=87 Score=34.00 Aligned_cols=63 Identities=19% Similarity=0.137 Sum_probs=41.8
Q ss_pred hhHHHHHHHhcCCHHHHHHHhhhCCCc-chHhhh--hcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 303 LGAQIVQLTASGDFEEALALCKLLPPE-DASLRA--AKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 303 ~~~qI~~Ll~~~~~e~Al~L~~~~~~~-~~~~~~--~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
+...++.+-.+|+|++|+.+++..... ...+.. -....+....|..+..+|+|++|..++.++
T Consensus 290 ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~ 355 (429)
T 3qwp_A 290 SLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRT 355 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 344577777899999999998753110 000111 123345556678888999999999999873
No 409
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=29.22 E-value=49 Score=36.20 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=39.1
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
...+++.|+|++|+..++.....+ . .....+...|..++..++|++|...|.++
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~----p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLD----S-ANEKGLYRRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC----C-ccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344568899999999997642111 1 12345666789999999999999999874
No 410
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=28.34 E-value=97 Score=29.83 Aligned_cols=59 Identities=14% Similarity=0.044 Sum_probs=40.0
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchH---hhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDAS---LRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~---~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
...+...|++++|+..++........ ........+....|..++..|+|++|...|.++
T Consensus 50 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 111 (283)
T 3edt_B 50 ALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 111 (283)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44456789999999988764210000 000123456777899999999999999999873
No 411
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=28.27 E-value=31 Score=37.90 Aligned_cols=60 Identities=10% Similarity=0.043 Sum_probs=40.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhCC---Ccch----Hh---hhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLP---PEDA----SL---RAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~---~~~~----~~---~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
+-..+++.|+|++|+...+... +... .. .......++...|..++..++|++|+..|.++
T Consensus 274 ~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 274 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3456678999999998887531 0110 00 00011355667799999999999999999873
No 412
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=28.26 E-value=42 Score=35.30 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=41.1
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 306 qI~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
....+...|+|++|+.+++.....+.. .......++...|..++..|+|++|..+|.++
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD 112 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344557889999999998764211000 00123356778899999999999999998873
No 413
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.91 E-value=5.5e+02 Score=27.00 Aligned_cols=145 Identities=10% Similarity=0.076 Sum_probs=74.5
Q ss_pred cEEEEEEe-CCEEEEEeC-CCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeC
Q 003405 18 KIDAVASY-GLKILLGCS-DGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE 95 (823)
Q Consensus 18 ~I~ci~~~-~~~L~vGT~-~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d 95 (823)
...+++.. +++||+... ++.|..++..... +...... ...+ . +.+.+..+.|++...
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~------------------~~~~~~~-~~~~-~-ia~~~~g~~l~~~d~ 190 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK------------------VTTVHPG-FKGG-K-PAVTKDKQRVYSIGW 190 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTE------------------EEEEEET-CCBC-B-CEECTTSSEEEEEBS
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCE------------------EEEeecc-CCCC-c-eeEecCCCcEEEEec
Confidence 45555554 356777765 4778888754211 1111111 1222 3 777777777766654
Q ss_pred -c---EEEEeCCCCcccccc----c-CCCCcEEEEeeCCCceEEEEEcCeEEEEEEcC-CCceeEeeeecC----CCCce
Q 003405 96 -S---IAFHRLPNLETIAVL----T-KAKGANVYSWDDRRGFLCFARQKRVCIFRHDG-GRGFVEVKDFGV----PDTVK 161 (823)
Q Consensus 96 -~---l~~~~L~~l~~~~~i----~-~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~-~~~f~~~kei~~----~~~~~ 161 (823)
+ |..++...-.....+ . ....++.++++++.+.|.++.... .|++++. +.....+..... ...|.
T Consensus 191 ~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~-~I~~~d~~~~~~~~~~~~~~~g~~~~~P~ 269 (409)
T 3hrp_A 191 EGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNK-NFGRFNVKTQEVTLIKQLELSGSLGTNPG 269 (409)
T ss_dssp STTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTC-EEEEEETTTCCEEEEEECCCCSCCCCSSC
T ss_pred CCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCC-cEEEEECCCCCEEEEecccccCCCCCCcc
Confidence 2 555554321111111 2 345667788888777787763322 3555542 212222211111 12345
Q ss_pred -EEEec--CCeEEEEEcCc--eEEEEcC
Q 003405 162 -SMSWC--GENICIAIRKG--YMILNAT 184 (823)
Q Consensus 162 -~l~~~--~~~i~v~~~~~--y~lidl~ 184 (823)
+++|. ++.++++.... ...++.+
T Consensus 270 ~~ia~~p~~g~lyv~d~~~~~I~~~~~~ 297 (409)
T 3hrp_A 270 PYLIYYFVDSNFYMSDQNLSSVYKITPD 297 (409)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccEEEeCCCCEEEEEeCCCCEEEEEecC
Confidence 89987 46788887643 4455554
No 414
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=27.75 E-value=98 Score=33.58 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=36.8
Q ss_pred HHHhcCCHHHHHHHhhhCC-------CcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 309 QLTASGDFEEALALCKLLP-------PEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 309 ~Ll~~~~~e~Al~L~~~~~-------~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.+...|+|++|+.+++... ..+.+ .........|..++.+|+|++|..++.++
T Consensus 338 ~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp----~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 338 ACINLGLLEEALFYGTRTMEPYRIFFPGSHP----VRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhHHHHcCCCCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3457899999999987631 11111 12333445688899999999999999874
No 415
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=27.70 E-value=7e+02 Score=28.12 Aligned_cols=197 Identities=11% Similarity=0.036 Sum_probs=95.0
Q ss_pred EEEEeCCCC--cccccccCCCCcEEEEeeCCCceEEEE--EcCeEEEEEEcCCCceeEeeeecCC-CCceEEEec--CCe
Q 003405 97 IAFHRLPNL--ETIAVLTKAKGANVYSWDDRRGFLCFA--RQKRVCIFRHDGGRGFVEVKDFGVP-DTVKSMSWC--GEN 169 (823)
Q Consensus 97 l~~~~L~~l--~~~~~i~~~kg~~~fa~~~~~~~l~V~--~kkki~l~~~~~~~~f~~~kei~~~-~~~~~l~~~--~~~ 169 (823)
|...++..- +....+...++...++++...+.|+++ ..++|..+...+...... .+..+ ..|.+|++. ++.
T Consensus 20 I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~--v~~~~~~~P~GlAvD~~~~~ 97 (619)
T 3s94_A 20 LRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK 97 (619)
T ss_dssp EEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE--EECSSCSCEEEEEEETTTTE
T ss_pred EEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE--EEeCCCCCcCeEEEEecCCE
Confidence 655566432 222234566777788888877888888 345555444443211111 12212 467777765 788
Q ss_pred EEEEEc--CceEEEEcCCCCeeeccCCCCCCCCEEEEc-cCCeEEEEeC---C-eEEEEcCCCcccc---CCceeecCCC
Q 003405 170 ICIAIR--KGYMILNATNGALSEVFPSGRIGPPLVVSL-LSGELLLGKE---N-IGVFVDQNGKLLQ---ADRICWSEAP 239 (823)
Q Consensus 170 i~v~~~--~~y~lidl~~~~~~~L~~~~~~~~p~i~~~-~~~EfLL~~~---~-~gvfv~~~G~~~~---~~~i~w~~~P 239 (823)
|+|+.. ....+++++++....+... ....|.-+.+ +.+..|.+.| + .....+.+|...+ ...+. .|
T Consensus 98 ly~~d~~~~~I~v~~~dG~~~~~l~~~-~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~---~P 173 (619)
T 3s94_A 98 LYWTDSETNRIEVSNLDGSLRKVLFWQ-ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY---WP 173 (619)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEECS-SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS---SE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEEEeC-CCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCC---CC
Confidence 999987 3566778876655555532 1223543333 3334444433 2 3334566775311 11222 36
Q ss_pred cEEEEe--CCEEEEEeC--CeEEEEEccCCCceeEEEe---eCCcccccccCCeEEEec--cceEEEeecc
Q 003405 240 IAVIIQ--KPYAIALLP--RRVEVRSLRVPYALIQTIV---LQNVRHLIPSSNAVVVAL--ENSIFGLFPV 301 (823)
Q Consensus 240 ~~v~~~--~PYll~~~~--~~ieV~~l~~~~~lvQ~i~---l~~~~~l~~~~~~v~v~s--~~~I~~l~~~ 301 (823)
..+++. .-.|+.... +.|++.++. +.-.+++. ++.+.-+...++.+|++- .+.|+++...
T Consensus 174 ~Glald~~~~~LY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKY 242 (619)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEESSS--CCEEC---------CCCEEESSSEEEEECTTTCSEEEEESS
T ss_pred cEEEEEccCCEEEEEeCCCCeEEEecCC--CCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECC
Confidence 666666 345555543 356666552 22222211 111122233344666653 4567776653
No 416
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=27.14 E-value=5.1e+02 Score=26.28 Aligned_cols=187 Identities=15% Similarity=0.088 Sum_probs=97.6
Q ss_pred EEEEEEe--CCEEEEE-eCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeE-e
Q 003405 19 IDAVASY--GLKILLG-CSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL-S 94 (823)
Q Consensus 19 I~ci~~~--~~~L~vG-T~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l-~ 94 (823)
..+++.. ++.||+. ...+.|+.++.++... ...+.. .++ .....|.+.+..+.|.+. .
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~--------------~~~~~~--~~l--~~p~glavd~~~g~ly~~d~ 98 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--------------VQNVVV--SGL--LSPDGLACDWLGEKLYWTDS 98 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC--------------CCEEEE--ECC--SCCCEEEEETTTTEEEEEET
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc--------------eEEEEc--CCC--CCccEEEEEcCCCeEEEEEC
Confidence 3345544 4677766 4567788777654211 001111 112 345567777644444332 3
Q ss_pred C--cEEEEeCCCCcccccc-cCCCCcEEEEeeCCCceEEEEEc---CeEEEEEEcCCCceeEeeeecCCCCceEEEec--
Q 003405 95 E--SIAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFARQ---KRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC-- 166 (823)
Q Consensus 95 d--~l~~~~L~~l~~~~~i-~~~kg~~~fa~~~~~~~l~V~~k---kki~l~~~~~~~~f~~~kei~~~~~~~~l~~~-- 166 (823)
. .|.++++..-.....+ ........+++++..+.|.++-. .+|..+..++. ....+-.-. -..|.+|++.
T Consensus 99 ~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~-l~~Pnglavd~~ 176 (318)
T 3sov_A 99 ETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSE-IYWPNGLTLDYE 176 (318)
T ss_dssp TTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEECSS-CSCEEEEEEETT
T ss_pred CCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEECC-CCCccEEEEecc
Confidence 3 2888887542111111 23445677889987788888752 34444433322 111111101 1367899997
Q ss_pred CCeEEEEEcC--ceEEEEcCCCCeeeccCCCCCCCCEEEEccCCeEEEEeC---CeEEEEcC-CCcc
Q 003405 167 GENICIAIRK--GYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKE---NIGVFVDQ-NGKL 227 (823)
Q Consensus 167 ~~~i~v~~~~--~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~EfLL~~~---~~gvfv~~-~G~~ 227 (823)
++.|+|+... ....+|++.+....+.. +....|..+.+..+ .+.+.+ +....++. +|..
T Consensus 177 ~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~~~~P~glav~~~-~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 177 EQKLYWADAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEEC-SCCSCEEEEEEETT-EEEEEETTTTEEEEEETTTCCS
T ss_pred CCEEEEEECCCCEEEEEcCCCCceEEEec-CCCCCceEEEEeCC-EEEEEecCCCeEEEEECCCCCc
Confidence 6789999873 45667876544444443 23346776666544 443332 34444565 5653
No 417
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=26.41 E-value=1.7e+02 Score=33.79 Aligned_cols=79 Identities=9% Similarity=0.108 Sum_probs=47.5
Q ss_pred ccccccCCCCcEEEEEEe------C---CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCC-CCC
Q 003405 8 SLELISNCSPKIDAVASY------G---LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFS-KKP 77 (823)
Q Consensus 8 ~~~l~~~~~~~I~ci~~~------~---~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~-k~~ 77 (823)
..|++-......+.|++. + .-+|+||++|.|+........ . .+......+. ..|
T Consensus 388 ~~pll~~~~~~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~---------------~-~~~ee~~~~~~~~p 451 (663)
T 1olz_A 388 NRPRLIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHA---------------V-HIIEETQLFQDFEP 451 (663)
T ss_dssp GSCSEEEESCCEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSS---------------E-EEEEEEECCTTCCC
T ss_pred CcceEEeCCCceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCC---------------c-eEEEEecccCCCCc
Confidence 344444333456777753 2 258999999999887543211 1 1122223332 468
Q ss_pred eeEEEEeccc--CceeeEeC-cEEEEeC
Q 003405 78 ILSMEVLASR--QLLLSLSE-SIAFHRL 102 (823)
Q Consensus 78 I~qI~~~~~~--~~Ll~l~d-~l~~~~L 102 (823)
|..|.+.+.. +.|.+.++ +|.-..+
T Consensus 452 I~~l~l~~~~~~~~Lyv~s~~~V~~vpl 479 (663)
T 1olz_A 452 VQTLLLSSKKGNRFVYAGSNSGVVQAPL 479 (663)
T ss_dssp CCEEEECCSSSSCEEEEECSSCEEEEES
T ss_pred ceeeEeccCCCccEEEEEEcCeEEEEEc
Confidence 9888888777 77888887 4544444
No 418
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=26.08 E-value=52 Score=36.30 Aligned_cols=54 Identities=15% Similarity=0.018 Sum_probs=36.0
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
...+.+.|+|++|+..++.....+. .....+...|..++..|+|++|...|.++
T Consensus 47 g~~~~~~g~~~~A~~~~~~al~l~p-----~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 100 (477)
T 1wao_1 47 SLAYLRTECYGYALGDATRAIELDK-----KYIKGYYRRAASNMALGKFRAALRDYETV 100 (477)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455677888888888765311111 12234556688888999999999998873
No 419
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=25.57 E-value=41 Score=39.11 Aligned_cols=53 Identities=23% Similarity=0.154 Sum_probs=39.1
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
...+++.|+|++|+..++.....+ -.-...+...|..++..|+|++|...|.+
T Consensus 440 a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 492 (681)
T 2pzi_A 440 VRALLDLGDVAKATRKLDDLAERV-----GWRWRLVWYRAVAELLTGDYDSATKHFTE 492 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhccC-----cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445678899999999887642110 12234667789999999999999999987
No 420
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=25.57 E-value=47 Score=33.43 Aligned_cols=56 Identities=14% Similarity=0.235 Sum_probs=36.7
Q ss_pred HHhcCCHHHHHHHhhhCCCcchHh--hhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 310 LTASGDFEEALALCKLLPPEDASL--RAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 310 Ll~~~~~e~Al~L~~~~~~~~~~~--~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
....|+|++|+...+.....-... .......+..-.|..++..|+|++|..+|.++
T Consensus 165 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 356788888888776531000000 01123346667899999999999999999874
No 421
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=25.45 E-value=5.3e+02 Score=28.22 Aligned_cols=169 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcccCCCCcccccccCChHHHHHHhhcCCCCChhhHHHhhhhh------------
Q 003405 549 YTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLV------------ 616 (823)
Q Consensus 549 ~~~L~~ly~~~g~~~~AL~ll~~l~~~~~~d~~~~~~~~~~~~~~~i~yL~~L~~~~~~li~~y~~wl------------ 616 (823)
+..++..|.+.|+.++|++++.+....... .-+..|...|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~----------------------------pd~~tyn~Li~~c~~~~~~~~~ 80 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQ----------------------------LSQYHYNVLLYVCSLAEAATES 80 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCC----------------------------CCHHHHHHHHHHHTTCCCCSSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----------------------------CCHhHHHHHHHHHHhCCchhhh
Q ss_pred -hhcCcccccccccc---CCCChHHHH------HHHhhcCchhHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHhh
Q 003405 617 -LESCPTQTIELFLS---GNIPADLVN------SYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYS 686 (823)
Q Consensus 617 -l~~~p~~~~~if~~---~~l~~~~Vl------~~L~~~~~~~~~~YLE~li~~~~~~~~~~~h~~L~~lYl~~i~~~~~ 686 (823)
-..+-+.|.++|-. ..+.|+.+. .+......+.+...++.+...+ -..+..-+|.|+..|...
T Consensus 81 ~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~~tyn~lI~~~~~~------ 153 (501)
T 4g26_A 81 SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG-IQPRLRSYGPALFGFCRK------ 153 (501)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHT------
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCccceehHHHHHHHHC------
Q ss_pred hhhhhcccCcccchHHHHHHHHHhhhcCCCChHHHhccCCCCchhhHHHHHhhccccHHHHHHHHH---HHhCCCchhHH
Q 003405 687 DLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYV---HKVFLINQPVF 763 (823)
Q Consensus 687 ~~~~~~~~~~~~~~~~r~kLl~fL~~s~~Yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~~AL~ilv---~~L~D~~~a~~ 763 (823)
+.......=+..+.+.. .-|+..-+...+-.|+|.|+.++|++++- ..-..++..-|
T Consensus 154 ----------g~~~~A~~l~~~M~~~G----------~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 154 ----------GDADKAYEVDAHMVESE----------VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp ----------TCHHHHHHHHHHHHHTT----------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred ----------CCHHHHHHHHHHHHhcC----------CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHH
Q ss_pred HHHHHHhcC
Q 003405 764 LLIRRMAMD 772 (823)
Q Consensus 764 ~~l~~~y~~ 772 (823)
.+|...|.+
T Consensus 214 ~~l~~~F~s 222 (501)
T 4g26_A 214 DMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
No 422
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=25.05 E-value=5.8e+02 Score=26.23 Aligned_cols=142 Identities=14% Similarity=0.158 Sum_probs=73.6
Q ss_pred EeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCC-CCCCeeEEEEecc---cCceeeEeC-c-E
Q 003405 24 SYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGF-SKKPILSMEVLAS---RQLLLSLSE-S-I 97 (823)
Q Consensus 24 ~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~-~k~~I~qI~~~~~---~~~Ll~l~d-~-l 97 (823)
...+.|++-|+.|.++.....+-+...- ...+..+. .+-.+ ..-.|..+..+++ ...+++++. | +
T Consensus 51 ~t~d~ll~fT~~Gr~y~~~~~~lp~~~r--------~~~G~~i~-~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 51 STHDLILFFTTQGRVYRAKAYDLPEASR--------TARGQHVA-NLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp ETTSEEEEEETTSEEEEEEGGGSCBCCS--------SSCCEEHH-HHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred CCCCEEEEEeCCCeEEEEEHHHCcCCCc--------cCCCEEHH-HccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 3457999999999998876443221100 00011110 00112 2357888877774 467888887 5 8
Q ss_pred EEEeCCCCcccccccCCCCcEE------------EEeeCCCceEE-EEEcCeEEEEEEc--C----CCceeEeeeecC--
Q 003405 98 AFHRLPNLETIAVLTKAKGANV------------YSWDDRRGFLC-FARQKRVCIFRHD--G----GRGFVEVKDFGV-- 156 (823)
Q Consensus 98 ~~~~L~~l~~~~~i~~~kg~~~------------fa~~~~~~~l~-V~~kkki~l~~~~--~----~~~f~~~kei~~-- 156 (823)
+-..+.+|..... +|... +.++.+ ..|+ +..+.++..|... . ++.-.-.+-+.+
T Consensus 122 Kr~~l~~~~~~~r----~G~~~i~lke~D~lv~~~~~~~~-d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~ 196 (327)
T 3uc1_A 122 KKSKLTDFDSNRS----GGIVAVNLRDNDELVGAVLCSAG-DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNI 196 (327)
T ss_dssp EEEEGGGGCCCCS----SCEESCBCCTTCCEEEEEEECTT-CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCT
T ss_pred EEeEHHHhhcccc----CceEEEEECCCCEEEEEEEecCC-CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCC
Confidence 8888877764321 23222 222222 3344 4455556555544 2 111111222333
Q ss_pred CCCceEEEec--CCeEEEEEcCceE
Q 003405 157 PDTVKSMSWC--GENICIAIRKGYM 179 (823)
Q Consensus 157 ~~~~~~l~~~--~~~i~v~~~~~y~ 179 (823)
.|.+.++... +..+++++.++|.
T Consensus 197 ~d~Vv~~~~~~~~~~ll~~T~~G~~ 221 (327)
T 3uc1_A 197 DDRLLSLNVVREGTYLLVATSGGYA 221 (327)
T ss_dssp TCCEEEEEECCTTCEEEEEETTSEE
T ss_pred CCEEEEEEEECCCCEEEEEeCCCcE
Confidence 3567776655 3468888887764
No 423
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=25.04 E-value=7.8e+02 Score=27.78 Aligned_cols=152 Identities=11% Similarity=0.024 Sum_probs=0.0
Q ss_pred EEEEeCCEEEEEeC-CCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCceeeEeCc---
Q 003405 21 AVASYGLKILLGCS-DGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSES--- 96 (823)
Q Consensus 21 ci~~~~~~L~vGT~-~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~Ll~l~d~--- 96 (823)
+++..+++||+... .+.|.+.++++.. .+....-.-..-..|.+.|..+.|..---+
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~-------------------~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~ 146 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQH-------------------RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKP 146 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTT-------------------CEEEECSSCCCEEEEEEETTTTEEEEEECSSSC
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCc-------------------EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCC
Q ss_pred -EEEEeCCCCcccccccCCCCcEEEEeeCCCceEEEEEcCeEEEEEEcCCCceeEeeeecCCCCceEEEecCCeEEEEEc
Q 003405 97 -IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIR 175 (823)
Q Consensus 97 -l~~~~L~~l~~~~~i~~~kg~~~fa~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kei~~~~~~~~l~~~~~~i~v~~~ 175 (823)
|...+++.-.....+......+.++++...++|.++-.+.=.|+.++-+...+.+-.-.++ .|.+|+..++.|+|+..
T Consensus 147 ~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~-~P~glav~~~~ly~tD~ 225 (628)
T 4a0p_A 147 KIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLP-HPFGLTQYQDYIYWTDW 225 (628)
T ss_dssp EEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCS-CEEEEEEETTEEEEEET
T ss_pred EEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCC-CceEEEEECCEEEEecC
Q ss_pred --CceEEEEcCCCCeeecc
Q 003405 176 --KGYMILNATNGALSEVF 192 (823)
Q Consensus 176 --~~y~lidl~~~~~~~L~ 192 (823)
.....+|..+|+...++
T Consensus 226 ~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 226 SRRSIERANKTSGQNRTII 244 (628)
T ss_dssp TTTEEEEEETTTCCSCEEE
T ss_pred CCCEEEEEECCCCCceEEE
No 424
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=24.50 E-value=4.7e+02 Score=29.96 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.3
Q ss_pred EEEEeCCEEEEEeCCCcEEEEcCC
Q 003405 21 AVASYGLKILLGCSDGSLKIYSPG 44 (823)
Q Consensus 21 ci~~~~~~L~vGT~~G~l~~y~~~ 44 (823)
++..+++.||+||.+|.|+.++..
T Consensus 123 ~~a~~~~~v~v~~~dg~l~alD~~ 146 (677)
T 1kb0_A 123 GVALWKGKVYVGAWDGRLIALDAA 146 (677)
T ss_dssp CCEEETTEEEEECTTSEEEEEETT
T ss_pred CceEECCEEEEEcCCCEEEEEECC
Confidence 345688999999999999999864
No 425
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=24.44 E-value=5.2e+02 Score=25.51 Aligned_cols=156 Identities=13% Similarity=0.162 Sum_probs=88.6
Q ss_pred cCCCCcEEEEEEe--CCEEEE-EeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCCeeEEEEecccCc
Q 003405 13 SNCSPKIDAVASY--GLKILL-GCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQL 89 (823)
Q Consensus 13 ~~~~~~I~ci~~~--~~~L~v-GT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~~k~~I~qI~~~~~~~~ 89 (823)
+.....++.++.. ++.||+ ..++|.|+.++..+. +.+.+.--...-...|.+++.. .
T Consensus 23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~-------------------v~~~i~l~g~~D~EGIa~~~~g-~ 82 (255)
T 3qqz_A 23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGD-------------------LIRTIPLDFVKDLETIEYIGDN-Q 82 (255)
T ss_dssp TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCC-------------------EEEEEECSSCSSEEEEEECSTT-E
T ss_pred CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCC-------------------EEEEEecCCCCChHHeEEeCCC-E
Confidence 4455579988887 467875 888999999886521 2223221112467788888654 4
Q ss_pred eeeEeCc---EEEEeCCCCcc---cc-------cccCCCCcEEEEeeCCCceEEEEEcC-eEEEEEEcC---CCceeEee
Q 003405 90 LLSLSES---IAFHRLPNLET---IA-------VLTKAKGANVYSWDDRRGFLCFARQK-RVCIFRHDG---GRGFVEVK 152 (823)
Q Consensus 90 Ll~l~d~---l~~~~L~~l~~---~~-------~i~~~kg~~~fa~~~~~~~l~V~~kk-ki~l~~~~~---~~~f~~~k 152 (823)
+++.+++ +.++.++.... .. ..+..+|...+|+++...++.++..+ ...||++++ +..+...+
T Consensus 83 ~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~ 162 (255)
T 3qqz_A 83 FVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISK 162 (255)
T ss_dssp EEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEE
T ss_pred EEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeec
Confidence 4444552 77777654221 11 12345677889999888788877554 458999873 11232222
Q ss_pred e------ecCCCCceEEEecC--CeEEEEEcCc--eEEEEcCCCCeee
Q 003405 153 D------FGVPDTVKSMSWCG--ENICIAIRKG--YMILNATNGALSE 190 (823)
Q Consensus 153 e------i~~~~~~~~l~~~~--~~i~v~~~~~--y~lidl~~~~~~~ 190 (823)
. ..+ ..+.++++.. +.+++-+..+ -..+|.+ |++..
T Consensus 163 ~~~~~~~~~~-~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~ 208 (255)
T 3qqz_A 163 DKALQRQFTL-DDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIG 208 (255)
T ss_dssp CHHHHHTCCS-SCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEE
T ss_pred chhhcccccc-CCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEE
Confidence 1 112 2467777763 3455555533 3444443 44433
No 426
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.19 E-value=1.1e+02 Score=32.39 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=41.3
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCC----Cc-chH-------hhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 304 GAQIVQLTASGDFEEALALCKLLP----PE-DAS-------LRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 304 ~~qI~~Ll~~~~~e~Al~L~~~~~----~~-~~~-------~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
-.+...+++.|+|++|+....... .. +.. .............|..++..|+|++|.+++.++
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~ 81 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHS 81 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456788899999999999886531 10 000 000111233445688899999999999998874
No 427
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=23.55 E-value=66 Score=29.07 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=9.1
Q ss_pred HHHhcCCHHHHHHHhhh
Q 003405 309 QLTASGDFEEALALCKL 325 (823)
Q Consensus 309 ~Ll~~~~~e~Al~L~~~ 325 (823)
.+...|++++|+..++.
T Consensus 53 ~~~~~~~~~~A~~~~~~ 69 (177)
T 2e2e_A 53 YYLWQNDYSNSLLAYRQ 69 (177)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 33455666666555544
No 428
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=23.32 E-value=1.3e+02 Score=29.44 Aligned_cols=59 Identities=20% Similarity=0.223 Sum_probs=39.6
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHh---hhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASL---RAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~---~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
...+...|++++|+..++......... .......+....|..++..|+|++|..+|.++
T Consensus 118 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 118 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345567899999999887642100000 00123455667799999999999999999874
No 429
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=23.27 E-value=55 Score=30.08 Aligned_cols=57 Identities=16% Similarity=0.059 Sum_probs=35.9
Q ss_pred HHHhcCCHHHHHHHhhhCCCcchHhh--hhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 309 QLTASGDFEEALALCKLLPPEDASLR--AAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 309 ~Ll~~~~~e~Al~L~~~~~~~~~~~~--~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.+...|++++|+..++.....-.... ......+....|..++..|+|++|..+|.++
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34577888888877765310000000 0123345666789999999999999998874
No 430
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=23.15 E-value=30 Score=38.22 Aligned_cols=52 Identities=12% Similarity=0.058 Sum_probs=38.4
Q ss_pred HHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 003405 309 QLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (823)
Q Consensus 309 ~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (823)
.+.+.|+|++|+..++.....+ ......+...|..++..|+|++|...|.++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 66 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-----PSNAIYYGNRSLAYLRTECYGYALGDATRA 66 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-----CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3457899999999987631111 122356677899999999999999999874
No 431
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=23.12 E-value=76 Score=35.49 Aligned_cols=53 Identities=9% Similarity=-0.076 Sum_probs=29.5
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCcchHhhhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 307 I~~Ll~~~~~e~Al~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
...+.+.|++++|+..++.....+. .....+...|..++..|+|++|...|.+
T Consensus 30 g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 30 ADAELGMGDTTAGEMAVQRGLALHP-----GHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTTST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3445677888888887765321111 1123344456666666666666666655
No 432
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=22.71 E-value=98 Score=25.08 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhcCCCHHHHHHhCCCC
Q 003405 340 SIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSI 379 (823)
Q Consensus 340 ~i~~~~a~~lf~~~~f~~A~~~f~~~~~dP~~vi~Lfp~l 379 (823)
.++...|..++..|+|++|...|.+ ++.+.|..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~-------al~~~p~~ 40 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEE-------LVETDPDY 40 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-------HHHHSTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH-------HHHhCCCc
Confidence 4566779999999999999999987 45666655
No 433
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=22.36 E-value=63 Score=33.81 Aligned_cols=26 Identities=8% Similarity=0.167 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh
Q 003405 549 YTALLELYKSNARHREALKLLHELVE 574 (823)
Q Consensus 549 ~~~L~~ly~~~g~~~~AL~ll~~l~~ 574 (823)
+..|+.+|...|++++|++.+.+-..
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45789999999999999999987653
No 434
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=22.30 E-value=2.6e+02 Score=31.70 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=38.7
Q ss_pred EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCC-CCCCeeEEEEecccCceeeEeC-cEEEEeC
Q 003405 28 KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGF-SKKPILSMEVLASRQLLLSLSE-SIAFHRL 102 (823)
Q Consensus 28 ~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~-~k~~I~qI~~~~~~~~Ll~l~d-~l~~~~L 102 (823)
-+|+||++|.|+...+....... ..+.+ ..++-+ ...+|..|.+.+..+.|.+.++ +|.=..+
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~-----------~~~~i-eei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVPl 446 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHS-----------FAFNI-MEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVPL 446 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTC-----------CCEEE-EEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEEET
T ss_pred EEEEEcCCcEEEEEEecCCCCcc-----------eeEEE-EEeeccCCCCceeeEEEcCCCCEEEEEecceEEEcch
Confidence 57999999999987655322110 11222 223222 2468888988888888888877 4443333
No 435
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=22.15 E-value=6.5e+02 Score=25.77 Aligned_cols=77 Identities=10% Similarity=0.070 Sum_probs=43.0
Q ss_pred EEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCC-CCCCeeEEEEecc---cCceeeEeC-c
Q 003405 22 VASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGF-SKKPILSMEVLAS---RQLLLSLSE-S 96 (823)
Q Consensus 22 i~~~~~~L~vGT~~G~l~~y~~~~~~~~~~~~~d~~~l~~~~~~l~~~~~~~-~k~~I~qI~~~~~---~~~Ll~l~d-~ 96 (823)
.+...+.|++-|+.|.++.+...+-+...- . ..+..+.+-. .+ ..-.|..+..+++ ...+++++. |
T Consensus 46 ~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r-----~---a~G~~i~~~i-~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G 116 (323)
T 1wp5_A 46 EMNTKDVLLLFTNKGNYLYCPVHELPDIRW-----K---DLGQHIANII-PIDRDEEIIKAIPINDFELNGYFLFVTRNG 116 (323)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCT-----T---SCCEEGGGTS-CCCTTCCEEEEEEESCTTSSCEEEEEETTS
T ss_pred EECCCCEEEEEECCCEEEEEEHHHCcCCCC-----C---CCCcChhhcc-CCCCCCEEEEEEEecccCCCceEEEEeCCC
Confidence 334457999999999999887654222110 0 0011011111 12 1345777766664 345777777 5
Q ss_pred -EEEEeCCCCcc
Q 003405 97 -IAFHRLPNLET 107 (823)
Q Consensus 97 -l~~~~L~~l~~ 107 (823)
++-..+.+|..
T Consensus 117 ~iKrt~l~e~~~ 128 (323)
T 1wp5_A 117 MVKKTELKHYKA 128 (323)
T ss_dssp EEEEEEGGGGCC
T ss_pred eEEEeEHHHhhh
Confidence 78777776654
No 436
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=21.65 E-value=90 Score=31.58 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=11.6
Q ss_pred HHHHHHHccCCHHHHHHHHHh
Q 003405 344 RFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 344 ~~a~~lf~~~~f~~A~~~f~~ 364 (823)
..|..++..|++++|...|.+
T Consensus 200 ~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 200 AQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 344555555666666666554
No 437
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=21.46 E-value=73 Score=32.01 Aligned_cols=54 Identities=20% Similarity=0.160 Sum_probs=36.1
Q ss_pred Hhc-CCHHHHHHHhhhCCCcchHh-hhhcHHHHHHHHHHHHHccCCHHHHHHHHHh
Q 003405 311 TAS-GDFEEALALCKLLPPEDASL-RAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (823)
Q Consensus 311 l~~-~~~e~Al~L~~~~~~~~~~~-~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (823)
... |++++|+...+......... .......++...|..++..|+|++|+.+|.+
T Consensus 128 ~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 183 (292)
T 1qqe_A 128 ENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (292)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344 99999998886531100000 0011235677789999999999999999986
No 438
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=20.91 E-value=67 Score=26.94 Aligned_cols=38 Identities=18% Similarity=0.359 Sum_probs=31.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHhcC---CCHHHHHHhCCCCC
Q 003405 343 IRFAHYLFDTGSYEEAMEHFLASQ---VDITYALSLYPSIV 380 (823)
Q Consensus 343 ~~~a~~lf~~~~f~~A~~~f~~~~---~dP~~vi~Lfp~l~ 380 (823)
.+.|..|+.+|+++.|+.||..+- -.|..+|..|-.-+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~q~Tl 64 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQTL 64 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 356999999999999999998853 58888888875554
No 439
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=20.68 E-value=71 Score=33.39 Aligned_cols=25 Identities=8% Similarity=0.252 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh
Q 003405 549 YTALLELYKSNARHREALKLLHELV 573 (823)
Q Consensus 549 ~~~L~~ly~~~g~~~~AL~ll~~l~ 573 (823)
+..|+.+|...|++++|++.+.+..
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4579999999999999999988754
No 440
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=20.43 E-value=73 Score=26.17 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=22.7
Q ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc
Q 003405 551 ALLELYKSNARHREALKLLHELVEES 576 (823)
Q Consensus 551 ~L~~ly~~~g~~~~AL~ll~~l~~~~ 576 (823)
-|+..|...|+|++|+..|.++.+..
T Consensus 48 ~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 48 LIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 56889999999999999999987544
Done!