BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003406
(823 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 405 CQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSC 452
C++C+ E + ++LCD C K FHL CL+ + +P GEW C +C
Sbjct: 3 CKVCR-KKGEDDKLILCDECNKAFHLFCLRPALYE-VP-DGEWQCPAC 47
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing Acetylation At Lysine 16
pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing N-Terminal Acetylation
At Serine 1
Length = 114
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 388 HPT-------WTPPSREYMSKAFTCQICKL--TANEVETVVLCDACEKGFHLKCLQMNNQ 438
HPT T + Y + C+ C L T+ + ++ CD C++G+H+ CL N
Sbjct: 34 HPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCL--NPP 91
Query: 439 KGIPRGGEWHCMSCLKL 455
P G W C C +L
Sbjct: 92 VAEPPEGSWSCHLCWEL 108
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 402 AFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNGKPL 461
++ CQ+C +E + ++ CD C+ +H+ CL + IPR G W C C+ L+ K
Sbjct: 16 SYICQVCS-RGDEDDKLLFCDGCDDNYHIFCL-LPPLPEIPR-GIWRCPKCI-LAECKQP 71
Query: 462 PPKYG 466
P +G
Sbjct: 72 PEAFG 76
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 35.8 bits (81), Expect = 0.098, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 405 CQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 454
C++C+ ++LCD C + +H+ CL + +K P G+W C C K
Sbjct: 14 CEVCQQGGE----IILCDTCPRAYHMVCLDPDMEKA-PE-GKWSCPHCEK 57
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 405 CQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 454
C +C+ + ++ CD C + FHL CL ++ IP G W C SCL+
Sbjct: 8 CAVCR----DGGELICCDGCPRAFHLACLSPPLRE-IP-SGTWRCSSCLQ 51
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 405 CQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 454
C +C+ + ++ CD C + FHL CL ++ IP G W C SCL+
Sbjct: 11 CAVCR----DGGELICCDGCPRAFHLACLSPPLRE-IP-SGTWRCSSCLQ 54
>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
Corepressor
Length = 88
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 402 AFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNGK 459
A C++C+ + +V+C+ CE FHL C + + +P G EW C C L + K
Sbjct: 25 ATICRVCQKPGD----LVMCNQCEFCFHLDC-HLPALQDVP-GEEWSCSLCHVLPDLK 76
>pdb|2XB1|A Chain A, Crystal Structure Of The Human Pygo2 Phd Finger In Complex
With The B9l Hd1 Domain
pdb|2XB1|C Chain C, Crystal Structure Of The Human Pygo2 Phd Finger In Complex
With The B9l Hd1 Domain
Length = 105
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 403 FTCQICKLTANEVETVVLCDA-CEKGFHLKCLQMNNQK----GIPRGGEWHCMSCLK 454
+ C C+ N+ + +LC+A C+K FH +C M W C CLK
Sbjct: 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60
>pdb|1WEE|A Chain A, Solution Structure Of Phd Domain In Phd Finger Family
Protein
Length = 72
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 408 CKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456
C ++ E ++ CD C H +C+ +NN +P ++ C C++LS
Sbjct: 21 CGTKDDDGERMLACDGCGVWHHTRCIGINNADALP--SKFLCFRCIELS 67
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 399 MSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSC 452
+ + C +C + + ++CD C+ FH+ CL +P EW+C C
Sbjct: 171 LCRVCACHLCG-GRQDPDKQLMCDECDMAFHIYCLD-PPLSSVPSEDEWYCPEC 222
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 405 CQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSC 452
CQ CK + + + +V CD C+KG+H CLQ K +P G W C +C
Sbjct: 57 CQNCKQSGEDSKMLV-CDTCDKGYHTFCLQ-PVMKSVPTNG-WKCKNC 101
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 405 CQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSC 452
C +C+ + +++CD C + +HL CL K IP+ G W C C
Sbjct: 8 CSVCRKSGQ----LLMCDTCSRVYHLDCLD-PPLKTIPK-GMWICPRC 49
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 33.5 bits (75), Expect = 0.52, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 405 CQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSC 452
C +C + + ++CD C+ FH+ CL +P EW+C C
Sbjct: 8 CHLCG-GRQDPDKQLMCDECDMAFHIYCLD-PPLSSVPSEDEWYCPEC 53
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 399 MSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSC 452
+ + C +C + + ++CD C+ FH+ CL +P EW+C C
Sbjct: 187 LCRVCACHLCG-GRQDPDKQLMCDECDMAFHIYCLD-PPLSSVPSEDEWYCPEC 238
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
Histone H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 399 MSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSC 452
+ + C +C + + ++CD C+ FH+ CL +P EW+C C
Sbjct: 15 LCRVCACHLCG-GRQDPDKQLMCDECDMAFHIYCLD-PPLSSVPSEDEWYCPEC 66
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 399 MSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSC 452
+ + C +C + + ++CD C+ FH+ CL +P EW+C C
Sbjct: 15 LCRVCACHLCG-GRQDPDKQLMCDECDMAFHIYCLD-PPLSSVPSEDEWYCPEC 66
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
Length = 72
Score = 33.1 bits (74), Expect = 0.65, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 399 MSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSC 452
+ + C +C + + ++CD C+ FH+ CL +P EW+C C
Sbjct: 20 LCRVCACHLCG-GRQDPDKQLMCDECDMAFHIYCLD-PPLSSVPSEDEWYCPEC 71
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 399 MSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSC 452
+ + C +C + + ++CD C+ FH+ CL +P EW+C C
Sbjct: 17 LCRVCACHLCG-GRQDPDKQLMCDECDMAFHIYCLD-PPLSSVPSEDEWYCPEC 68
>pdb|3KQI|A Chain A, Crystal Structure Of Phf2 Phd Domain Complexed With
H3k4me3 Peptide
Length = 75
Score = 33.1 bits (74), Expect = 0.68, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 407 ICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNGKPLPPK 464
+C+L + ++ CDAC+ FH C+ + ++ P +HC +C K L K
Sbjct: 14 VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEA-PDIDIYHCPNCEKTHGKSTLKKK 70
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 32.7 bits (73), Expect = 0.85, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 399 MSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSC 452
+ + C +C + + ++CD C+ FH+ CL +P EW+C C
Sbjct: 23 LCRVCACHLCG-GRQDPDKQLMCDECDMAFHIYCLD-PPLSSVPSEDEWYCPEC 74
>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
Finger-Bromodomain
Length = 189
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 402 AFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNGK 459
A C++C+ + +V+C+ CE FHL C + + +P G EW C C L + K
Sbjct: 2 ATICRVCQKPGD----LVMCNQCEFCFHLDC-HLPALQDVP-GEEWSCSLCHVLPDLK 53
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 404 TCQICKLTANEVETVVLCDACEKGFHLKCL 433
TC C+ + ++ CD+C++GFH++C
Sbjct: 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECC 92
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 404 TCQICKLTANEVETVVLCDACEKGFHLKCL 433
TC C+ + ++ CD+C++GFH++C
Sbjct: 61 TCSSCRDQGKNADNMLFCDSCDRGFHMECC 90
>pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With
Dna
Length = 956
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 671 VQWIGDVLQIVDGKK-FYQSCRIGGVTYKVKD--HVLLHSSNNKLMPSKLQTMWEDTGTG 727
+ W+G+ ++ DGKK +Y+ I T +V D V+ S+ L +++ +WED+ G
Sbjct: 87 ISWVGEAVK-TDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNG 145
>pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With
Sinefungin
Length = 1002
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 671 VQWIGDVLQIVDGKK-FYQSCRIGGVTYKVKD--HVLLHSSNNKLMPSKLQTMWEDTGTG 727
+ W+G+ ++ DGKK +Y+ I T +V D V+ S+ L +++ +WED+ G
Sbjct: 133 ISWVGEAVK-TDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNG 191
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 405 CQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSC 452
C +C+ + +++CD C + +HL CL K IP+ G W C C
Sbjct: 12 CSVCRKSGQ----LLMCDTCSRVYHLDCLD-PPLKTIPK-GMWICPRC 53
>pdb|2VPE|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-bcl9
Wnt Signaling Complex
pdb|2VPE|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-bcl9
Wnt Signaling Complex
pdb|2VPG|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
pdb|2VPG|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 63
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 403 FTCQICKLTANEVETVVLCDA-CEKGFHLKCLQMNNQK----GIPRGGEWHCMSCL 453
+ C IC N+ + +LC+A C+K FH C M W C +C+
Sbjct: 6 YPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 61
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 408 CKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNGKPLPPKYGR 467
C + N E ++ C+ C K FHL C + P GEW C C LS KP +Y
Sbjct: 7 CAVCQNGGE-LLCCEKCPKVFHLSC-HVPTLTNFP-SGEWICTFCRDLS--KP-EVEYDC 60
Query: 468 VMRSINTTKMPSNTSVIQSPSDKK 491
S N+ K + V +P DK+
Sbjct: 61 DAPSHNSEKKKTEGLVKLTPIDKR 84
>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer-
Obliterator 1(Dio-1)
Length = 76
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 398 YMSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKG--IPRGGE-WHCMSCLK 454
Y A C IC+ N ++ CD CE+ FH C+ ++ +G + R GE + C +C
Sbjct: 12 YDPNALYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69
Query: 455 LS 456
LS
Sbjct: 70 LS 71
>pdb|2VPD|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
pdb|2VPD|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 67
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 403 FTCQICKLTANEVETVVLCDA-CEKGFHLKCLQMNNQK----GIPRGGEWHCMSCL 453
+ C IC N+ + +LC+A C+K FH C M W C +C+
Sbjct: 10 YPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 65
>pdb|2VPB|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 65
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 403 FTCQICKLTANEVETVVLCDA-CEKGFHLKCLQMNNQK----GIPRGGEWHCMSCL 453
+ C IC N+ + +LC+A C+K FH C M W C +C+
Sbjct: 9 YPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64
>pdb|2DX8|A Chain A, Crystal Structure Analysis Of The Phd Domain Of The
Transcription Coactivator Pygophus
pdb|2DX8|B Chain B, Crystal Structure Analysis Of The Phd Domain Of The
Transcription Coactivator Pygophus
Length = 67
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 403 FTCQICKLTANEVETVVLCDA-CEKGFHLKCLQMNNQK----GIPRGGEWHCMSCL 453
+ C IC N+ + +LC+A C+K FH C M W C +C+
Sbjct: 10 YPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 65
>pdb|2VP7|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 71
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 403 FTCQICKLTANEVETVVLCDA-CEKGFHLKCLQMNNQK----GIPRGGEWHCMSCL 453
+ C IC N+ + +LC+A C+K FH C M W C +C+
Sbjct: 10 YPCGICTNEVNDDQDAILCEASCQKFFHRICTGMTETAYGLLTAEASAVWGCDTCM 65
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
Terminal Loop Replaced By Corresponding Loop From Wstf
Length = 61
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 405 CQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSC 452
C++CK + ++ CD C +H+ CL+ + +P GEW C C
Sbjct: 12 CRVCK----DGGELLCCDTCPSSYHIHCLRPALYE-VP-DGEWQCPRC 53
>pdb|1ICW|A Chain A, Interleukin-8, Mutant With Glu 38 Replaced By Cys And Cys
50 Replaced By Ala
pdb|1ICW|B Chain B, Interleukin-8, Mutant With Glu 38 Replaced By Cys And Cys
50 Replaced By Ala
Length = 72
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 452 CLKLSNGKPLPPKYGRVMRSINTTKMPSNTSVIQSPSDKKFISVDQKVNNQQKI 505
C+K + KP PK+ + +R I + +NT +I SD + +++D K N Q++
Sbjct: 9 CIK-TYSKPFHPKFIKELRVIESGPHCANTCIIVKLSDGRELALDPKENWVQRV 61
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 22/104 (21%)
Query: 407 ICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNG----KPLP 462
ICK +E + + CD C+ +H +C+ + Q E+ C C + PL
Sbjct: 12 ICKTPEDESKFYIGCDRCQNWYHGRCVGI-LQSEAELIDEYVCPQCQSTEDAMTVLTPLT 70
Query: 463 PK----YGRVMRSINTTKM-------------PSNTSVIQSPSD 489
K RV+RS+ KM P VI+ P D
Sbjct: 71 EKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMD 114
>pdb|1QE6|A Chain A, Interleukin-8 With An Added Disulfide Between Residues 5
And 33 (l5c/h33c)
pdb|1QE6|B Chain B, Interleukin-8 With An Added Disulfide Between Residues 5
And 33 (l5c/h33c)
pdb|1QE6|C Chain C, Interleukin-8 With An Added Disulfide Between Residues 5
And 33 (l5c/h33c)
pdb|1QE6|D Chain D, Interleukin-8 With An Added Disulfide Between Residues 5
And 33 (l5c/h33c)
Length = 72
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 452 CLKLSNGKPLPPKYGRVMRSINTTKMPSNTSVIQSPSDKKFISVDQKVNNQQKI 505
C+K + KP PK+ + +R I + +NT +I SD + + +D K N Q++
Sbjct: 9 CIK-TYSKPFHPKFIKELRVIESGPCCANTEIIVKLSDGRELCLDPKENWVQRV 61
>pdb|1IL8|A Chain A, Three-Dimensional Structure Of Interleukin 8 In Solution
pdb|1IL8|B Chain B, Three-Dimensional Structure Of Interleukin 8 In Solution
pdb|2IL8|A Chain A, Three-Dimensional Structure Of Interleukin 8 In Solution
pdb|2IL8|B Chain B, Three-Dimensional Structure Of Interleukin 8 In Solution
pdb|1ILP|A Chain A, Cxcr-1 N-Terminal Peptide Bound To Interleukin-8
pdb|1ILP|B Chain B, Cxcr-1 N-Terminal Peptide Bound To Interleukin-8
pdb|1ILQ|A Chain A, Cxcr-1 N-Terminal Peptide Bound To Interleukin-8
(Minimized Mean)
pdb|1ILQ|B Chain B, Cxcr-1 N-Terminal Peptide Bound To Interleukin-8
(Minimized Mean)
pdb|3IL8|A Chain A, Crystal Structure Of Interleukin 8: Symbiosis Of Nmr And
Crystallography
Length = 72
Score = 30.0 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 452 CLKLSNGKPLPPKYGRVMRSINTTKMPSNTSVIQSPSDKKFISVDQKVNNQQKI 505
C+K + KP PK+ + +R I + +NT +I SD + + +D K N Q++
Sbjct: 9 CIK-TYSKPFHPKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRV 61
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 671 VQWIGDVLQIVDGKKFYQSCRIGGVTYKVKD--HVLLHSSNNKLMPSKLQTMWED 723
+ W+G ++I + + +YQ I +V D V+ S+ L +++ +WED
Sbjct: 444 ISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWED 498
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 671 VQWIGDVLQIVDGKKFYQSCRIGGVTYKVKD--HVLLHSSNNKLMPSKLQTMWED 723
+ W+G ++I + + +YQ I +V D V+ S+ L +++ +WED
Sbjct: 86 ISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWED 140
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 19/100 (19%)
Query: 407 ICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL----------- 455
+C+L + ++ CD C+ FH C+ + +K +HC +C L
Sbjct: 9 LCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKA-ADIDLYHCPNCEVLHGPSIMKKRRG 67
Query: 456 -------SNGKPLPPKYGRVMRSINTTKMPSNTSVIQSPS 488
GKP+ +R + + S+ VI P+
Sbjct: 68 SSKGHDTHKGKPVKTGSPTFVRELRSRTFDSSDEVILKPT 107
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
Length = 873
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 671 VQWIGDVLQIVDGKKFYQSCRIGGVTYKVKD--HVLLHSSNNKLMPSKLQTMWED 723
+ W+G ++I + + +YQ I +V D V+ S+ L +++ +WED
Sbjct: 5 ISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWED 59
>pdb|2YYR|A Chain A, Structural Analysis Of Phd Domain Of Pygopus Complexed
With Trimethylated Histone H3 Peptide
pdb|2YYR|B Chain B, Structural Analysis Of Phd Domain Of Pygopus Complexed
With Trimethylated Histone H3 Peptide
Length = 67
Score = 29.3 bits (64), Expect = 9.2, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 403 FTCQICKLTANEVETVVLCDA-CEKGFHLKC 432
+ C IC N+ + +LC+A C+K FH C
Sbjct: 10 YPCGICTNEVNDDQDAILCEASCQKWFHRIC 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,201,663
Number of Sequences: 62578
Number of extensions: 978794
Number of successful extensions: 1757
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 1742
Number of HSP's gapped (non-prelim): 66
length of query: 823
length of database: 14,973,337
effective HSP length: 107
effective length of query: 716
effective length of database: 8,277,491
effective search space: 5926683556
effective search space used: 5926683556
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)