Query 003406
Match_columns 823
No_of_seqs 341 out of 1237
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 00:09:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w4s_A Polybromo, polybromo 1 100.0 5.1E-32 1.7E-36 264.7 1.9 139 673-822 3-143 (174)
2 3swr_A DNA (cytosine-5)-methyl 99.9 1.3E-22 4.3E-27 241.8 7.0 146 669-821 131-281 (1002)
3 3av4_A DNA (cytosine-5)-methyl 99.9 6.9E-23 2.3E-27 249.3 4.1 149 668-821 441-593 (1330)
4 3av4_A DNA (cytosine-5)-methyl 99.6 4.8E-16 1.6E-20 189.7 8.9 133 681-820 631-811 (1330)
5 4dov_A ORC1, origin recognitio 99.6 4.7E-15 1.6E-19 144.9 9.3 136 670-821 6-160 (163)
6 3swr_A DNA (cytosine-5)-methyl 99.6 3.1E-15 1.1E-19 178.8 9.6 135 680-821 318-501 (1002)
7 2e6r_A Jumonji/ARID domain-con 99.5 2.6E-15 9E-20 134.2 4.6 74 401-478 15-89 (92)
8 4ft4_B DNA (cytosine-5)-methyl 99.5 7E-15 2.4E-19 170.3 3.0 128 684-820 45-179 (784)
9 1f62_A Transcription factor WS 99.3 3E-13 1E-17 107.9 3.3 49 404-455 2-50 (51)
10 2lri_C Autoimmune regulator; Z 99.3 1.8E-12 6.2E-17 109.8 4.7 50 401-456 11-60 (66)
11 1mm2_A MI2-beta; PHD, zinc fin 99.2 2.9E-12 9.9E-17 106.5 4.2 49 401-455 8-56 (61)
12 1xwh_A Autoimmune regulator; P 99.2 3.7E-12 1.3E-16 107.2 4.2 50 401-456 7-56 (66)
13 1fp0_A KAP-1 corepressor; PHD 99.2 5.7E-12 1.9E-16 112.5 5.6 50 400-455 23-72 (88)
14 2e6s_A E3 ubiquitin-protein li 99.2 5E-12 1.7E-16 110.0 4.9 50 403-454 27-76 (77)
15 3asl_A E3 ubiquitin-protein li 99.2 3.8E-12 1.3E-16 108.7 4.1 50 404-455 20-69 (70)
16 2yql_A PHD finger protein 21A; 99.2 3.6E-12 1.2E-16 104.0 3.7 48 401-454 8-55 (56)
17 2l5u_A Chromodomain-helicase-D 99.2 4.5E-12 1.5E-16 105.4 4.2 49 401-455 10-58 (61)
18 2puy_A PHD finger protein 21A; 99.2 5.9E-12 2E-16 103.9 3.4 50 401-456 4-53 (60)
19 1wev_A Riken cDNA 1110020M19; 99.2 4.8E-12 1.6E-16 112.3 2.9 54 401-456 15-73 (88)
20 2yt5_A Metal-response element- 99.2 5.5E-12 1.9E-16 105.2 2.5 54 401-456 5-62 (66)
21 3shb_A E3 ubiquitin-protein li 99.2 9.2E-12 3.2E-16 108.5 3.8 49 403-454 27-76 (77)
22 2ku3_A Bromodomain-containing 99.1 2E-11 6.7E-16 104.8 2.5 50 401-455 15-66 (71)
23 3u5n_A E3 ubiquitin-protein li 99.1 3.6E-11 1.2E-15 120.2 4.2 50 401-456 6-55 (207)
24 3ask_A E3 ubiquitin-protein li 99.1 3.8E-11 1.3E-15 123.0 4.2 51 402-454 174-224 (226)
25 2l43_A N-teminal domain from h 99.1 2.6E-11 9E-16 107.7 2.1 51 401-456 24-76 (88)
26 3o36_A Transcription intermedi 99.1 5E-11 1.7E-15 117.0 4.3 50 401-456 3-52 (184)
27 2k16_A Transcription initiatio 99.0 6.7E-11 2.3E-15 101.1 3.4 53 401-456 17-69 (75)
28 2kwj_A Zinc finger protein DPF 99.0 8.1E-11 2.8E-15 108.4 3.4 50 404-456 60-109 (114)
29 3v43_A Histone acetyltransfera 99.0 1.7E-10 5.7E-15 105.9 4.6 49 404-454 63-111 (112)
30 2ro1_A Transcription intermedi 99.0 1.6E-10 5.4E-15 114.8 3.8 48 403-456 3-50 (189)
31 2ysm_A Myeloid/lymphoid or mix 99.0 2.9E-10 9.9E-15 103.5 4.4 52 404-458 56-107 (111)
32 4gne_A Histone-lysine N-methyl 98.8 2.3E-09 7.9E-14 98.7 4.9 52 401-460 14-67 (107)
33 1wen_A Inhibitor of growth fam 98.7 1E-08 3.5E-13 87.9 6.1 49 401-456 15-66 (71)
34 2lv9_A Histone-lysine N-methyl 98.7 6.4E-09 2.2E-13 93.8 5.0 48 403-455 29-76 (98)
35 2vnf_A ING 4, P29ING4, inhibit 98.7 3.6E-09 1.2E-13 87.8 2.5 46 402-454 10-58 (60)
36 1weu_A Inhibitor of growth fam 98.7 2.3E-08 7.9E-13 89.8 6.0 49 401-456 35-86 (91)
37 3c6w_A P28ING5, inhibitor of g 98.7 7.2E-09 2.4E-13 85.9 2.5 47 401-454 8-57 (59)
38 2g6q_A Inhibitor of growth pro 98.6 8E-09 2.7E-13 86.5 2.6 48 401-455 10-60 (62)
39 2jmi_A Protein YNG1, ING1 homo 98.6 1.8E-08 6.3E-13 90.3 3.7 49 401-456 25-77 (90)
40 2fl7_A Regulatory protein SIR3 98.5 2.9E-08 9.8E-13 102.1 3.0 121 692-821 48-190 (232)
41 1m4z_A Origin recognition comp 98.5 2.9E-08 9.8E-13 102.4 2.9 121 692-821 48-190 (238)
42 2ysm_A Myeloid/lymphoid or mix 98.4 1.1E-07 3.9E-12 86.4 4.5 50 401-453 6-55 (111)
43 1we9_A PHD finger family prote 98.4 1.1E-07 3.8E-12 78.9 3.5 53 401-455 5-58 (64)
44 1x4i_A Inhibitor of growth pro 98.4 1.1E-07 3.9E-12 81.3 2.2 47 403-456 7-56 (70)
45 1wem_A Death associated transc 98.3 9.2E-08 3.1E-12 82.1 1.3 54 397-456 11-71 (76)
46 2xb1_A Pygopus homolog 2, B-ce 98.3 1.6E-07 5.3E-12 85.9 2.3 50 403-456 4-62 (105)
47 2vpb_A Hpygo1, pygopus homolog 98.3 1E-07 3.4E-12 80.6 0.8 48 402-453 8-64 (65)
48 2lbm_A Transcriptional regulat 98.3 2E-07 7E-12 89.7 2.0 48 401-454 62-116 (142)
49 3o70_A PHD finger protein 13; 98.2 5.4E-07 1.9E-11 76.6 3.8 49 401-454 18-66 (68)
50 1wee_A PHD finger family prote 98.2 6E-07 2E-11 76.5 3.8 52 401-455 15-66 (72)
51 1wep_A PHF8; structural genomi 98.2 3.9E-07 1.3E-11 78.9 2.3 49 402-455 12-63 (79)
52 2ri7_A Nucleosome-remodeling f 98.2 2E-07 6.8E-12 90.3 -0.1 54 401-456 7-60 (174)
53 2kgg_A Histone demethylase jar 98.2 4.4E-07 1.5E-11 73.1 1.4 47 403-453 3-52 (52)
54 3kqi_A GRC5, PHD finger protei 98.1 5.9E-07 2E-11 77.2 1.4 52 403-456 11-62 (75)
55 1wew_A DNA-binding family prot 98.1 1.6E-06 5.3E-11 75.1 3.0 49 402-456 16-73 (78)
56 3ql9_A Transcriptional regulat 98.0 8E-07 2.7E-11 84.4 -0.1 48 401-454 56-110 (129)
57 3o7a_A PHD finger protein 13 v 97.9 6.1E-06 2.1E-10 66.3 2.8 46 404-454 6-51 (52)
58 2rsd_A E3 SUMO-protein ligase 97.8 9.1E-06 3.1E-10 68.6 3.3 49 403-455 11-65 (68)
59 2kwj_A Zinc finger protein DPF 97.8 3.3E-06 1.1E-10 77.7 0.5 50 403-453 2-59 (114)
60 3lqh_A Histone-lysine N-methyl 97.8 5.3E-06 1.8E-10 82.7 1.2 53 403-455 3-63 (183)
61 3v43_A Histone acetyltransfera 97.7 3.3E-06 1.1E-10 77.4 -0.8 52 401-453 4-62 (112)
62 3kv5_D JMJC domain-containing 97.5 1.3E-05 4.4E-10 90.2 0.3 49 403-456 38-89 (488)
63 3kv4_A PHD finger protein 8; e 97.2 2.9E-05 9.8E-10 86.6 -1.7 49 404-456 6-57 (447)
64 3pur_A Lysine-specific demethy 97.2 0.00011 3.9E-09 83.2 2.6 49 407-456 47-95 (528)
65 4ap4_A E3 ubiquitin ligase RNF 97.1 3.6E-05 1.2E-09 69.4 -2.2 90 328-456 31-123 (133)
66 1wil_A KIAA1045 protein; ring 96.9 0.00027 9.1E-09 63.1 1.9 53 400-455 13-76 (89)
67 4bbq_A Lysine-specific demethy 96.5 0.00054 1.8E-08 62.5 1.0 50 405-455 62-114 (117)
68 2ku7_A MLL1 PHD3-CYP33 RRM chi 95.8 0.0021 7.3E-08 58.1 0.9 40 417-456 1-45 (140)
69 2ecl_A Ring-box protein 2; RNF 95.5 0.0023 7.9E-08 54.8 -0.1 31 329-359 48-78 (81)
70 2ect_A Ring finger protein 126 95.5 0.0059 2E-07 51.0 2.3 33 329-361 36-68 (78)
71 1iym_A EL5; ring-H2 finger, ub 95.4 0.004 1.4E-07 48.6 1.1 28 329-356 27-54 (55)
72 2ecm_A Ring finger and CHY zin 94.8 0.0059 2E-07 47.5 0.5 29 329-357 27-55 (55)
73 2ep4_A Ring finger protein 24; 94.8 0.0042 1.4E-07 51.4 -0.4 31 329-359 36-66 (74)
74 1x4j_A Ring finger protein 38; 94.6 0.0066 2.3E-07 50.5 0.2 28 329-356 44-71 (75)
75 3dpl_R Ring-box protein 1; ubi 94.3 0.0068 2.3E-07 55.2 -0.4 29 328-356 72-100 (106)
76 2d8s_A Cellular modulator of i 94.2 0.011 3.9E-07 51.2 0.9 30 330-359 41-72 (80)
77 2kiz_A E3 ubiquitin-protein li 94.2 0.0067 2.3E-07 49.5 -0.6 29 329-357 35-63 (69)
78 3ng2_A RNF4, snurf, ring finge 94.0 0.0075 2.6E-07 49.1 -0.6 32 328-359 34-65 (71)
79 4a0k_B E3 ubiquitin-protein li 94.0 0.0099 3.4E-07 55.4 0.0 29 328-356 83-111 (117)
80 1v87_A Deltex protein 2; ring- 93.9 0.015 5E-07 51.9 1.0 31 329-359 61-96 (114)
81 1chc_A Equine herpes virus-1 r 93.8 0.013 4.6E-07 47.4 0.6 32 328-359 23-54 (68)
82 2l0b_A E3 ubiquitin-protein li 93.7 0.0097 3.3E-07 51.8 -0.5 28 329-356 61-88 (91)
83 2ea6_A Ring finger protein 4; 93.6 0.01 3.5E-07 47.8 -0.5 29 328-356 39-67 (69)
84 2xeu_A Ring finger protein 4; 93.6 0.011 3.9E-07 46.8 -0.3 33 328-360 27-59 (64)
85 2d8t_A Dactylidin, ring finger 93.0 0.012 4.1E-07 48.5 -0.9 34 328-361 32-65 (71)
86 2djb_A Polycomb group ring fin 92.0 0.032 1.1E-06 46.1 0.3 34 328-361 33-66 (72)
87 2ecn_A Ring finger protein 141 91.7 0.019 6.6E-07 46.9 -1.4 32 328-359 31-62 (70)
88 4ayc_A E3 ubiquitin-protein li 91.3 0.037 1.3E-06 51.5 0.0 31 328-358 70-100 (138)
89 3lrq_A E3 ubiquitin-protein li 90.7 0.061 2.1E-06 47.5 0.8 34 328-361 40-74 (100)
90 2y43_A E3 ubiquitin-protein li 90.5 0.07 2.4E-06 46.6 1.0 31 328-358 40-70 (99)
91 2yur_A Retinoblastoma-binding 90.2 0.065 2.2E-06 44.6 0.4 31 329-359 34-66 (74)
92 3fl2_A E3 ubiquitin-protein li 89.8 0.11 3.6E-06 47.3 1.6 48 328-381 69-117 (124)
93 2csy_A Zinc finger protein 183 89.4 0.057 1.9E-06 45.5 -0.5 29 328-356 32-60 (81)
94 1t1h_A Gspef-atpub14, armadill 89.3 0.086 3E-06 43.8 0.6 32 328-359 25-57 (78)
95 2ct0_A Non-SMC element 1 homol 88.9 0.09 3.1E-06 45.4 0.4 29 328-356 33-63 (74)
96 4ap4_A E3 ubiquitin ligase RNF 88.9 0.07 2.4E-06 47.8 -0.3 32 329-360 97-128 (133)
97 1jm7_A BRCA1, breast cancer ty 88.5 0.16 5.6E-06 44.7 1.8 34 328-361 38-74 (112)
98 2ckl_A Polycomb group ring fin 88.2 0.15 5E-06 45.3 1.3 31 328-358 33-63 (108)
99 1g25_A CDK-activating kinase a 88.0 0.11 3.8E-06 41.9 0.4 33 328-360 25-58 (65)
100 3ztg_A E3 ubiquitin-protein li 87.9 0.14 4.9E-06 43.8 1.0 28 329-356 32-61 (92)
101 2ecy_A TNF receptor-associated 87.8 0.13 4.3E-06 41.7 0.5 31 328-358 32-63 (66)
102 3rsn_A SET1/ASH2 histone methy 87.5 0.42 1.4E-05 47.7 4.2 48 407-454 9-58 (177)
103 2egp_A Tripartite motif-contai 87.1 0.23 7.9E-06 41.0 1.8 31 328-358 29-66 (79)
104 2ecv_A Tripartite motif-contai 86.7 0.27 9.1E-06 40.8 2.0 32 328-359 36-73 (85)
105 2ct2_A Tripartite motif protei 86.1 0.1 3.5E-06 43.9 -0.9 30 328-357 36-68 (88)
106 2ysl_A Tripartite motif-contai 86.0 0.16 5.6E-06 41.4 0.3 30 328-357 37-69 (73)
107 2ckl_B Ubiquitin ligase protei 85.1 0.18 6.2E-06 47.9 0.2 32 328-359 72-104 (165)
108 1z6u_A NP95-like ring finger p 84.5 0.31 1.1E-05 46.4 1.5 48 328-381 95-143 (150)
109 2ecw_A Tripartite motif-contai 84.5 0.26 9E-06 40.8 0.9 31 329-359 37-73 (85)
110 1rmd_A RAG1; V(D)J recombinati 84.2 0.26 8.9E-06 44.1 0.8 33 328-360 40-73 (116)
111 1jm7_B BARD1, BRCA1-associated 83.7 0.81 2.8E-05 41.2 3.8 27 328-356 40-66 (117)
112 1x4j_A Ring finger protein 38; 83.3 0.34 1.2E-05 40.1 1.1 48 401-455 22-69 (75)
113 3hct_A TNF receptor-associated 82.8 0.24 8.1E-06 44.8 -0.1 32 328-359 35-67 (118)
114 3l11_A E3 ubiquitin-protein li 81.9 0.29 1E-05 43.7 0.2 30 328-357 32-62 (115)
115 1iym_A EL5; ring-H2 finger, ub 81.8 0.94 3.2E-05 34.9 3.0 49 401-455 4-52 (55)
116 3a1b_A DNA (cytosine-5)-methyl 81.8 0.45 1.5E-05 46.8 1.4 47 402-454 79-133 (159)
117 2d8s_A Cellular modulator of i 81.5 1.2 4E-05 38.5 3.8 52 401-456 14-68 (80)
118 1vyx_A ORF K3, K3RING; zinc-bi 81.0 0.28 9.5E-06 40.4 -0.3 26 331-356 31-58 (60)
119 2ecl_A Ring-box protein 2; RNF 80.3 0.44 1.5E-05 40.5 0.7 32 418-455 42-73 (81)
120 4gne_A Histone-lysine N-methyl 79.5 0.82 2.8E-05 42.1 2.3 41 402-449 58-98 (107)
121 2y1n_A E3 ubiquitin-protein li 78.6 0.49 1.7E-05 52.2 0.6 35 327-361 348-383 (389)
122 2pv0_B DNA (cytosine-5)-methyl 78.3 0.38 1.3E-05 53.1 -0.4 50 401-455 92-148 (386)
123 1wgm_A Ubiquitin conjugation f 78.0 0.63 2.2E-05 41.5 1.0 48 326-380 38-85 (98)
124 2kr4_A Ubiquitin conjugation f 75.4 0.67 2.3E-05 40.0 0.4 33 329-361 32-64 (85)
125 2ect_A Ring finger protein 126 74.1 2.8 9.5E-05 34.6 3.9 49 401-456 14-62 (78)
126 2ecm_A Ring finger and CHY zin 73.7 1.7 5.8E-05 33.3 2.3 48 402-455 5-52 (55)
127 2ct0_A Non-SMC element 1 homol 73.1 1.6 5.5E-05 37.6 2.2 52 397-455 10-61 (74)
128 2kre_A Ubiquitin conjugation f 72.1 1 3.5E-05 40.3 0.8 45 329-380 47-91 (100)
129 4ic3_A E3 ubiquitin-protein li 71.3 1.1 3.6E-05 37.5 0.7 28 328-359 41-69 (74)
130 2vje_A E3 ubiquitin-protein li 70.7 0.79 2.7E-05 37.5 -0.3 32 328-359 27-59 (64)
131 1weq_A PHD finger protein 7; s 70.2 3.4 0.00012 36.9 3.7 35 416-455 44-79 (85)
132 2ecj_A Tripartite motif-contai 69.1 1 3.5E-05 34.8 0.1 24 328-351 32-58 (58)
133 1v87_A Deltex protein 2; ring- 68.8 1.2 4.2E-05 39.4 0.5 52 403-456 26-92 (114)
134 2kiz_A E3 ubiquitin-protein li 67.8 2 6.7E-05 34.7 1.5 49 401-456 13-61 (69)
135 2c2l_A CHIP, carboxy terminus 67.6 1.8 6.1E-05 43.3 1.5 46 329-381 226-272 (281)
136 2vje_B MDM4 protein; proto-onc 67.3 0.91 3.1E-05 37.0 -0.6 32 328-359 26-58 (63)
137 1bor_A Transcription factor PM 65.9 2.8 9.5E-05 33.1 2.0 25 329-356 24-48 (56)
138 2ep4_A Ring finger protein 24; 65.1 2.5 8.6E-05 34.5 1.7 49 401-456 14-62 (74)
139 3ng2_A RNF4, snurf, ring finge 62.1 2 6.8E-05 34.6 0.5 52 401-458 9-63 (71)
140 4bbq_A Lysine-specific demethy 60.9 2.6 8.8E-05 38.1 1.1 38 403-457 8-45 (117)
141 2l0b_A E3 ubiquitin-protein li 60.2 2.1 7.1E-05 37.0 0.3 48 401-455 39-86 (91)
142 3dpl_R Ring-box protein 1; ubi 60.1 2.6 8.8E-05 38.2 0.9 48 402-455 37-98 (106)
143 2ysj_A Tripartite motif-contai 57.7 1.8 6.2E-05 34.4 -0.4 24 328-351 37-63 (63)
144 2ecj_A Tripartite motif-contai 57.5 4.7 0.00016 31.1 1.9 45 401-452 14-58 (58)
145 4a0k_B E3 ubiquitin-protein li 57.0 2.4 8.1E-05 39.4 0.2 48 402-455 48-109 (117)
146 3hcs_A TNF receptor-associated 56.2 2.3 7.8E-05 40.4 -0.1 31 329-359 36-67 (170)
147 2ysl_A Tripartite motif-contai 55.9 6.9 0.00024 31.6 2.8 49 401-456 19-67 (73)
148 1e4u_A Transcriptional repress 54.8 3 0.0001 35.7 0.5 31 329-359 33-64 (78)
149 2yho_A E3 ubiquitin-protein li 54.3 3.5 0.00012 35.1 0.7 30 328-361 35-65 (79)
150 2egp_A Tripartite motif-contai 54.2 8.3 0.00028 31.5 3.0 50 401-456 11-63 (79)
151 3k1l_B Fancl; UBC, ring, RWD, 52.5 2.5 8.4E-05 46.5 -0.6 28 329-356 334-372 (381)
152 3k1l_B Fancl; UBC, ring, RWD, 52.5 5.7 0.0002 43.7 2.2 35 401-435 307-345 (381)
153 3nw0_A Non-structural maintena 51.2 6.5 0.00022 40.4 2.3 47 402-455 180-226 (238)
154 2ct2_A Tripartite motif protei 49.8 5.3 0.00018 33.3 1.2 52 401-456 14-66 (88)
155 3vk6_A E3 ubiquitin-protein li 49.7 3.1 0.0001 38.3 -0.4 34 328-361 19-53 (101)
156 2ecv_A Tripartite motif-contai 49.3 5.6 0.00019 32.6 1.2 50 401-456 18-69 (85)
157 3l11_A E3 ubiquitin-protein li 48.7 8.2 0.00028 34.2 2.3 46 401-455 14-59 (115)
158 2ea6_A Ring finger protein 4; 47.8 4.5 0.00015 32.1 0.4 49 401-455 14-65 (69)
159 2ysj_A Tripartite motif-contai 46.6 4.4 0.00015 32.1 0.2 46 400-452 18-63 (63)
160 2xeu_A Ring finger protein 4; 46.3 2.9 9.8E-05 32.8 -1.0 49 402-456 3-54 (64)
161 3knv_A TNF receptor-associated 46.0 2 6.8E-05 40.5 -2.3 28 328-355 48-76 (141)
162 2ecy_A TNF receptor-associated 42.9 8.1 0.00028 30.9 1.2 47 401-456 14-60 (66)
163 6rxn_A Rubredoxin; electron tr 41.9 13 0.00044 29.6 2.2 17 437-455 23-39 (46)
164 2ckl_B Ubiquitin ligase protei 41.8 5.5 0.00019 37.7 0.0 47 401-455 53-99 (165)
165 2d8t_A Dactylidin, ring finger 40.9 13 0.00044 30.2 2.1 45 401-455 14-58 (71)
166 2ecw_A Tripartite motif-contai 40.0 6.7 0.00023 32.2 0.3 50 401-456 18-69 (85)
167 2djb_A Polycomb group ring fin 40.0 17 0.00058 29.5 2.7 48 400-456 13-60 (72)
168 3lrq_A E3 ubiquitin-protein li 39.6 8.2 0.00028 33.7 0.8 47 401-455 21-67 (100)
169 3t6p_A Baculoviral IAP repeat- 39.6 9.9 0.00034 41.1 1.6 28 328-359 312-340 (345)
170 2ecg_A Baculoviral IAP repeat- 38.8 7.8 0.00027 32.2 0.5 28 328-359 42-70 (75)
171 3nw0_A Non-structural maintena 38.6 7.1 0.00024 40.1 0.3 30 329-358 199-230 (238)
172 2bay_A PRE-mRNA splicing facto 38.2 5.4 0.00018 32.7 -0.6 35 327-361 20-54 (61)
173 1jm7_A BRCA1, breast cancer ty 36.9 11 0.00039 32.8 1.3 47 402-455 21-67 (112)
174 2f42_A STIP1 homology and U-bo 36.9 8.6 0.00029 38.2 0.5 45 329-380 124-169 (179)
175 3fl2_A E3 ubiquitin-protein li 36.2 9.3 0.00032 34.4 0.6 47 401-456 51-97 (124)
176 2yu4_A E3 SUMO-protein ligase 33.8 8.4 0.00029 33.5 -0.1 46 329-381 26-80 (94)
177 4b2u_A S67; toxin, ICK; NMR {S 31.6 14 0.00049 27.5 0.8 13 443-456 16-28 (36)
178 1pft_A TFIIB, PFTFIIBN; N-term 31.3 47 0.0016 25.8 3.9 27 403-429 6-35 (50)
179 1t1h_A Gspef-atpub14, armadill 31.2 12 0.00042 30.7 0.5 47 401-456 7-53 (78)
180 2ecn_A Ring finger protein 141 30.8 12 0.00042 30.0 0.4 45 401-456 14-58 (70)
181 4ayc_A E3 ubiquitin-protein li 30.5 10 0.00035 35.0 -0.1 46 401-456 52-97 (138)
182 2yur_A Retinoblastoma-binding 28.7 19 0.00065 29.5 1.2 49 400-455 13-61 (74)
183 1bor_A Transcription factor PM 28.4 38 0.0013 26.4 2.9 43 401-456 5-47 (56)
184 2lq6_A Bromodomain-containing 28.4 24 0.00082 31.1 1.9 30 403-434 18-49 (87)
185 2kn9_A Rubredoxin; metalloprot 26.5 36 0.0012 30.1 2.7 16 438-455 54-69 (81)
186 2ea5_A Cell growth regulator w 25.9 30 0.001 28.6 1.9 28 328-359 32-60 (68)
187 2ckl_A Polycomb group ring fin 24.4 26 0.00088 30.7 1.4 47 401-456 14-60 (108)
188 1jm7_B BARD1, BRCA1-associated 23.2 61 0.0021 28.8 3.6 45 401-456 21-65 (117)
189 1vyx_A ORF K3, K3RING; zinc-bi 22.8 21 0.0007 29.2 0.4 49 402-455 6-56 (60)
190 1e8j_A Rubredoxin; iron-sulfur 22.5 61 0.0021 26.2 3.1 16 438-455 30-45 (52)
191 3hct_A TNF receptor-associated 22.4 34 0.0012 30.5 1.8 47 400-455 16-62 (118)
192 1dx8_A Rubredoxin; electron tr 22.4 40 0.0014 28.9 2.1 16 438-455 34-49 (70)
193 3dxt_A JMJC domain-containing 22.2 20 0.00069 39.2 0.3 14 506-523 134-147 (354)
194 1e4u_A Transcriptional repress 21.8 48 0.0016 28.2 2.5 50 401-456 10-60 (78)
195 2y43_A E3 ubiquitin-protein li 21.3 26 0.00088 30.2 0.7 47 401-456 21-67 (99)
196 1z6u_A NP95-like ring finger p 21.2 23 0.00077 33.5 0.3 47 401-456 77-123 (150)
197 1s24_A Rubredoxin 2; electron 21.1 37 0.0013 30.4 1.6 16 438-455 62-77 (87)
198 3opt_A DNA damage-responsive t 20.9 20 0.00068 39.5 -0.1 14 506-523 181-194 (373)
No 1
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=99.97 E-value=5.1e-32 Score=264.68 Aligned_cols=139 Identities=20% Similarity=0.344 Sum_probs=101.2
Q ss_pred EccceeEEecCeeeEEEEEECCEEEeecCEEEEecCCCCCCh--hhhhhhhccCCCCceEEEeeeeccCCCCCCccCCCC
Q 003406 673 WIGDVLQIVDGKKFYQSCRIGGVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPC 750 (823)
Q Consensus 673 W~G~~~qvv~~k~~Y~~~~~~GetyrvgDcVLl~S~~~~~~P--akI~~lWE~~~sG~~~v~v~WYYrPE~t~~~~grp~ 750 (823)
|.|.|.....+|.||++|.++|++|+|||||+|++++++.+| |+|..||++ .+|++|++|+||||||||.+..+|
T Consensus 3 ~~g~~~~~~~~r~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~-~~g~~~v~v~WfyRPeet~~~~~~-- 79 (174)
T 1w4s_A 3 SSGSAGLSSLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWED-SAGEKWLYGCWFYRPNETFHLATR-- 79 (174)
T ss_dssp -----------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEEC-TTCCEEEEEEEEECGGGSCCCTTC--
T ss_pred ccCCccccCCCcEEeEEEEECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEEc-CCCCEEEEEEEecCHHHcccccCC--
Confidence 789999989999999999999999999999999999887888 999999997 489999999999999999986665
Q ss_pred CCCcccccccCCcccccccccccceEEeCcchhhhhHHHhhhcCCCCCCCCCCeEEEeeeeecccCccccCC
Q 003406 751 APESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPVS 822 (823)
Q Consensus 751 ~~~~NEVf~S~H~D~n~Va~IegKC~Vl~f~ry~~~~~rr~~~g~~~~~~~~p~F~Cr~~Yd~~~~~f~~v~ 822 (823)
.+++||||.|+|+|++++++|.|||+|+++.+|.+.. +..-...++||||+.||+.++.|.++.
T Consensus 80 ~~~~~EvF~S~~~d~~~~~~I~gkC~V~~~~~~~~~~--------p~~~~~~dvF~c~~~Yd~~~~~f~~i~ 143 (174)
T 1w4s_A 80 KFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLC--------PENFRDEDVYVCESRYSAKTKSFKKIK 143 (174)
T ss_dssp EEETTEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTEE--------ETTCCGGGEEEEEEEEETTTTEEEECS
T ss_pred cCCCCeeEEeCCcceecHHHeeeeEEEEECchhhhcC--------cCCCCCCCEEEEeEEEccccCeEccCc
Confidence 5679999999999999999999999999999995431 111123469999999999999999874
No 2
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.86 E-value=1.3e-22 Score=241.83 Aligned_cols=146 Identities=16% Similarity=0.291 Sum_probs=122.0
Q ss_pred cceEEccceeEEecCeeeEEEEEECCEEEeecCEEEEecCCCCCCh--hhhhhhhccCCCCceEEEeeeeccCCCCCCcc
Q 003406 669 HNVQWIGDVLQIVDGKKFYQSCRIGGVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAV 746 (823)
Q Consensus 669 ~~~~W~G~~~qvv~~k~~Y~~~~~~GetyrvgDcVLl~S~~~~~~P--akI~~lWE~~~sG~~~v~v~WYYrPE~t~~~~ 746 (823)
-.+.|+|.|++..+++.||+++.++|++|+|||||||...+...+| |+|+.|||+ .+|++||.+.|||||++|.+
T Consensus 131 ~~~~W~G~p~k~~~~~~~Y~s~~v~g~~i~VGD~V~v~~~d~~~ppyIarIe~m~ed-~~g~k~~~v~Wf~rp~ET~l-- 207 (1002)
T 3swr_A 131 NRISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWED-SSNGQMFHAHWFCAGTDTVL-- 207 (1002)
T ss_dssp SCEEEESCCCCCBTTEEECSEEEETTEEEETTCEEEECBSSTTSCCEEEEEEEEEEE-TTTEEEEEEEEEEEGGGSTT--
T ss_pred ccccccCcccccccCceeeeEEEECCEEEecCCEEEEecCCCCCCceEEEEEEEeec-CCCCeEEEEEEEecchhccc--
Confidence 3789999999888999999999999999999999999998887777 999999998 57999999999999999875
Q ss_pred CCCCCCCcccccccCCcccccccccccceEEeCcch---hhhhHHHhhhcCCCCCCCCCCeEEEeeeeecccCccccC
Q 003406 747 GCPCAPESNELYESNNESSVMAGLIRGPCEVLPPGK---FKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPV 821 (823)
Q Consensus 747 grp~~~~~NEVf~S~H~D~n~Va~IegKC~Vl~f~r---y~~~~~rr~~~g~~~~~~~~p~F~Cr~~Yd~~~~~f~~v 821 (823)
|+ .+.+.|||.|+|+|+++|++|.|||.|++... |.++-.. ..........+.+|||++.||+.++.|.++
T Consensus 208 g~--~~~~~ElFlsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~--~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~l 281 (1002)
T 3swr_A 208 GA--TSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGM--DPESLLEGDDGKTYFYQLWYDQDYARFESP 281 (1002)
T ss_dssp GG--GSCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTGGGCTTC--CCCCSCCCCCCTSEEEEEEEETTTTEEECC
T ss_pred cc--CCCCCceEeeccccCCcHHHhceeeEEEEccCCcchhhhccc--ccccccccCCCCeEEEEEEECCCCCcccCC
Confidence 55 37899999999999999999999999998544 2111100 001122233467999999999999999876
No 3
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.86 E-value=6.9e-23 Score=249.26 Aligned_cols=149 Identities=15% Similarity=0.248 Sum_probs=116.7
Q ss_pred ccceEEccceeEEecCeeeEEEEEECCEEEeecCEEEEecCCCCCCh--hhhhhhhccCCCCceEEEeeeeccCCCCCCc
Q 003406 668 LHNVQWIGDVLQIVDGKKFYQSCRIGGVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEA 745 (823)
Q Consensus 668 ~~~~~W~G~~~qvv~~k~~Y~~~~~~GetyrvgDcVLl~S~~~~~~P--akI~~lWE~~~sG~~~v~v~WYYrPE~t~~~ 745 (823)
.-.|.|.|.|++..+++.||+++.++|++|+|||||+|..++...+| |+|..|||+ .+|++||.++|||||+||.+
T Consensus 441 ~~~i~W~G~p~k~~~~~~~Y~~~~v~g~~~~vGD~V~v~~~d~~~p~yiarIe~iwe~-~dg~~~~~~~WfyRp~ETvl- 518 (1330)
T 3av4_A 441 KDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWED-KNGQMMFHAHWFCAGTDTVL- 518 (1330)
T ss_dssp CSCEEEESSCSCCC--CEEECSEEEESSEEETTCEEEECBCCSSCCCEEEEEEEEEEE-TTCCEEEEEEEEEEGGGSTT-
T ss_pred cCCceEccCceeccCCceeeeEEEECCEEEecCCEEEEeCCCCCCCCEEEEEeeeeec-CCCCEEEEEEEEEchHHccc-
Confidence 45899999999999999999999999999999999999876644455 999999997 48999999999999999875
Q ss_pred cCCCCCCCcccccccCCcccccccccccceEEeCcchhhhhHHHhhhcCC--CCCCCCCCeEEEeeeeecccCccccC
Q 003406 746 VGCPCAPESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGN--EANKGRHPVFLCQWFYDELKGVFRPV 821 (823)
Q Consensus 746 ~grp~~~~~NEVf~S~H~D~n~Va~IegKC~Vl~f~ry~~~~~rr~~~g~--~~~~~~~p~F~Cr~~Yd~~~~~f~~v 821 (823)
|+ .+.++|||.|+|.|++++++|.|||.|+++.++..+.+....... .+....+..|||++.||+.++.|..+
T Consensus 519 -g~--~~~~rElFlS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~C~~~Yd~~~~~F~~l 593 (1330)
T 3av4_A 519 -GA--TSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQEYARFESP 593 (1330)
T ss_dssp -GG--GSCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTSTTCCC-------------CCEEEEEEEETTTTEEECC
T ss_pred -cc--ccCCCeEEEecccccCcHHHhcceeEEEEeccchhhhhhcccCccccccccccCCceEEEeEECCccCccCCc
Confidence 44 488999999999999999999999999997664222100000000 01123445799999999999999875
No 4
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.61 E-value=4.8e-16 Score=189.74 Aligned_cols=133 Identities=20% Similarity=0.288 Sum_probs=105.7
Q ss_pred ecCeeeEEEEEECCEEEeecCEEEEecCC----------------------------------------CCCCh---hhh
Q 003406 681 VDGKKFYQSCRIGGVTYKVKDHVLLHSSN----------------------------------------NKLMP---SKL 717 (823)
Q Consensus 681 v~~k~~Y~~~~~~GetyrvgDcVLl~S~~----------------------------------------~~~~P---akI 717 (823)
.+++.||.+|..+|+.|+|||||+|.+.. +...| |+|
T Consensus 631 ~~~~~~Y~~~~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~~~~~kg~~~~~~~Py~IgqI 710 (1330)
T 3av4_A 631 VDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRI 710 (1330)
T ss_dssp SSSSEEEEEEEETTEEEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGGC-------CCCCCCCEEEEE
T ss_pred ccCceeeeEEEECCEEEecCCEEEECcccccccccccccccccccccccccccchhhhcccccccccccCCCCCceEEEE
Confidence 35799999999999999999999997762 01235 999
Q ss_pred hhhhccCCC-----CceEEEeeeeccCCCCCCccCCCCCCCcccccccCCcccccccccccceEEeCcchhhhhHHHhhh
Q 003406 718 QTMWEDTGT-----GSKWVMVNRCFFPGDLPEAVGCPCAPESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNH 792 (823)
Q Consensus 718 ~~lWE~~~s-----G~~~v~v~WYYrPE~t~~~~grp~~~~~NEVf~S~H~D~n~Va~IegKC~Vl~f~ry~~~~~rr~~ 792 (823)
..+|.+..+ ++.+|+|+||||||+|.+.....-.+..||||.|+|++.+++.+|.|||+|+++..|.....-...
T Consensus 711 ~eI~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~~y~~ 790 (1330)
T 3av4_A 711 KEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQ 790 (1330)
T ss_dssp EECCCCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHHHHHH
T ss_pred EEEEecCCccccCCCceEEEEEEeeChhhcccccccccccCcceEEeeccceecCHHHcCceEEEEeccccccccccccc
Confidence 999997554 789999999999999876432223467899999999999999999999999999988442111101
Q ss_pred cCCCCCCCCCCeEEEeeeeecccCcccc
Q 003406 793 LGNEANKGRHPVFLCQWFYDELKGVFRP 820 (823)
Q Consensus 793 ~g~~~~~~~~p~F~Cr~~Yd~~~~~f~~ 820 (823)
..+++|||+..||+.++.|..
T Consensus 791 -------~g~d~Fy~~~~Yd~~~k~~~~ 811 (1330)
T 3av4_A 791 -------GGPDRFYFLEAYNSKTKNFED 811 (1330)
T ss_dssp -------TSTTEEEESCEEETTTTEEEC
T ss_pred -------CCCCeEEEEEEecccCCeecc
Confidence 124599999999999999853
No 5
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=99.56 E-value=4.7e-15 Score=144.90 Aligned_cols=136 Identities=18% Similarity=0.320 Sum_probs=105.5
Q ss_pred ceEEccceeEEecCe---eeEEEEEE--CC---EEEeecCEEEEecCCCCCCh--hhhhhhhccC--CCCceEEEeeeec
Q 003406 670 NVQWIGDVLQIVDGK---KFYQSCRI--GG---VTYKVKDHVLLHSSNNKLMP--SKLQTMWEDT--GTGSKWVMVNRCF 737 (823)
Q Consensus 670 ~~~W~G~~~qvv~~k---~~Y~~~~~--~G---etyrvgDcVLl~S~~~~~~P--akI~~lWE~~--~sG~~~v~v~WYY 737 (823)
...|+|.|+ .|+| .+|+++++ .| .+|+|||+||+++.+. .-| |||..|.|+- ....+-..|.|||
T Consensus 6 ~ysW~g~~l--~drkl~~~~Y~~~~v~~~~~~~~~i~vGd~VLI~~~D~-~~PyVAki~~lye~~~e~~~~k~A~VQWy~ 82 (163)
T 4dov_A 6 TFSWVGRPL--PNRKQFQQMYREICMKINDGSEIHIKVGQFVLIQGEDN-KKPYVAKLIELFQNGAEVPPKKCARVQWFV 82 (163)
T ss_dssp EEEEESCCC--CCCCTTEEEESEEEEECTTSCEEEEETTCEEEECCSSS-SCCEEEEEEEEEEETTSSSCEEEEEEEEEE
T ss_pred EEEEeccCc--CCCcccceeeeEEEEecCCCCCeEEeeCCEEEEeCCcc-cCChhHHHHHHHhccccCCCceEEEEEeee
Confidence 578999999 6655 68999999 45 9999999999977776 667 9999999951 2347889999999
Q ss_pred cCCCCCCccCCCCC----CCcccccccCCcc---cccccccccceEEeCcchhhhhHHHhhhcCCCCCCCCCCeEEEeee
Q 003406 738 FPGDLPEAVGCPCA----PESNELYESNNES---SVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWF 810 (823)
Q Consensus 738 rPE~t~~~~grp~~----~~~NEVf~S~H~D---~n~Va~IegKC~Vl~f~ry~~~~~rr~~~g~~~~~~~~p~F~Cr~~ 810 (823)
||++.+. +++.+ +...|||.+.|.+ +.+|.+|.|||.|+++.-|..+ +.......+||=|..
T Consensus 83 R~~EiP~--~k~~l~g~~~~~qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~~---------p~~~~~e~t~Fvkls 151 (163)
T 4dov_A 83 RFLEIPV--SKRHLLGRSPPAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVI---------PVDQKSEETLFVKLS 151 (163)
T ss_dssp EGGGSCT--TTGGGGCSCCCTTEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCCC---------CSSCCCCSEEEEEEE
T ss_pred chhhccc--cchhhccCCCCCCeEEEecCCCCcccccHHHeeeceEEEEcCCcccc---------CCCcccceEEEEEEE
Confidence 9999876 33333 3367999998875 7799999999999999776222 112233449999988
Q ss_pred eecccCccccC
Q 003406 811 YDELKGVFRPV 821 (823)
Q Consensus 811 Yd~~~~~f~~v 821 (823)
+|. |.|.|+
T Consensus 152 Wd~--k~f~pl 160 (163)
T 4dov_A 152 WNK--KDFAPL 160 (163)
T ss_dssp ECS--SCEEEC
T ss_pred ecC--CcceeC
Confidence 875 667765
No 6
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.56 E-value=3.1e-15 Score=178.82 Aligned_cols=135 Identities=20% Similarity=0.266 Sum_probs=102.8
Q ss_pred EecCeeeEEEEEECCEEEeecCEEEEecCCC----------------------------------------CCCh---hh
Q 003406 680 IVDGKKFYQSCRIGGVTYKVKDHVLLHSSNN----------------------------------------KLMP---SK 716 (823)
Q Consensus 680 vv~~k~~Y~~~~~~GetyrvgDcVLl~S~~~----------------------------------------~~~P---ak 716 (823)
..+++.+|.+|..+|+.|+|||+|+|.+..- ...| ++
T Consensus 318 ~~~~~~~~~~~~~~g~~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~~P~~Igr 397 (1002)
T 3swr_A 318 DLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGR 397 (1002)
T ss_dssp ECSSCEEESEEEETTEEEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCCCCCEEEE
T ss_pred ccCCcEEEEEEEECCEEEecCCEEEECCcccccccccccccccccccccccccchhhhhccchhccccccCCCCCceeeE
Confidence 3467999999999999999999999998321 1225 99
Q ss_pred hhhhhccCC------CCceEEEeeeeccCCCCCCccCCCCCCCcccccccCCcccccccccccceEEeCcchhhhhHHHh
Q 003406 717 LQTMWEDTG------TGSKWVMVNRCFFPGDLPEAVGCPCAPESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERL 790 (823)
Q Consensus 717 I~~lWE~~~------sG~~~v~v~WYYrPE~t~~~~grp~~~~~NEVf~S~H~D~n~Va~IegKC~Vl~f~ry~~~~~rr 790 (823)
|..||-+.. ....+|+|+||||||+|.+..........||||.|.|++..++.+|+|||+|+++..|-....--
T Consensus 398 I~~i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~~~ 477 (1002)
T 3swr_A 398 IKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVY 477 (1002)
T ss_dssp EEEEEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHHHH
T ss_pred EeEEEecCCccccCCCccEEEEEEEEECcccccccccccccCCcceEEEecceeccCHHHcceEEEEEEeccccccchhh
Confidence 999997432 23489999999999999753333223357999999999999999999999999999884322100
Q ss_pred hhcCCCCCCCCCCeEEEeeeeecccCccccC
Q 003406 791 NHLGNEANKGRHPVFLCQWFYDELKGVFRPV 821 (823)
Q Consensus 791 ~~~g~~~~~~~~p~F~Cr~~Yd~~~~~f~~v 821 (823)
.. ..+..|||+..||+.+|.|.++
T Consensus 478 ~~-------~~p~~fyf~~~Yd~~~~~f~~~ 501 (1002)
T 3swr_A 478 SM-------GGPNRFYFLEAYNAKSKSFEDP 501 (1002)
T ss_dssp HH-------TSSSEEEEEEEEETTTTEEECC
T ss_pred cc-------CCCCeEEEEEEEeCCCCeeecC
Confidence 00 1113677779999999999764
No 7
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.6e-15 Score=134.18 Aligned_cols=74 Identities=27% Similarity=0.753 Sum_probs=63.2
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccccCCCCCCCCcccccc-cccccCCC
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNGKPLPPKYGRVMR-SINTTKMP 478 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~~gkp~pP~yGfvqr-s~ySfK~p 478 (823)
+...|.+|+.++++ +.||+||+|+++||++||.| +|..+|+| +|||+.|+....+++ +..|||+++ .+|+.+.+
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~P-pl~~~P~g-~W~C~~C~~~~~~~~-~~~~Gf~~~~~~y~l~~~ 89 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLP-PLPEIPRG-IWRCPKCILAECKQP-PEAFGFEQATQEYSLSGP 89 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSS-CCSSCCSS-CCCCHHHHHHHHSCC-SSCCSCCCCCCCCCCSCC
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCC-CcccCCCC-CcCCccCcCccccCC-ccccChhhcCCceeeccc
Confidence 45679999998766 79999999999999999999 79999999 999999998765554 678999997 67885543
No 8
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.48 E-value=7e-15 Score=170.27 Aligned_cols=128 Identities=11% Similarity=0.157 Sum_probs=97.1
Q ss_pred eeeEEEEEECCEEEeecCEEEEecCCCCCCh--hhhhhhhccCCCCceEEEeeeeccCCCCCCccC--CC---CCCCccc
Q 003406 684 KKFYQSCRIGGVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVG--CP---CAPESNE 756 (823)
Q Consensus 684 k~~Y~~~~~~GetyrvgDcVLl~S~~~~~~P--akI~~lWE~~~sG~~~v~v~WYYrPE~t~~~~g--rp---~~~~~NE 756 (823)
|.+|+.+.+||++|++||+|++++++. .++ +||-.|||+ .+|+.+++|.||||||||..... .. -.+..+|
T Consensus 45 ~~~~~~~~~~~~~~~~~d~~~v~~~~~-~~~~i~~i~~~~~~-~~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~d~~~ 122 (784)
T 4ft4_B 45 RCHYRSAKVDNVVYCLGDDVYVKAGEN-EADYIGRITEFFEG-TDQCHYFTCRWFFRAEDTVINSLVSISVDGHKHDPRR 122 (784)
T ss_dssp EEECSEEEETTEEEETTCEEEECCSTT-SCCEEEEEEEEEEE-TTSCEEEEEEEEEEGGGSTTGGGGGCCBTTBCCCTTB
T ss_pred ceeeeeeeECCEEEeCCCeEEEeCCCC-CCCEEEEEEEEEEc-CCCCEEEEEEEeeChhhhcccccccccccccccccce
Confidence 899999999999999999999998543 333 999999996 68999999999999999875321 10 1345899
Q ss_pred ccccCCcccccccccccceEEeCcchhhhhHHHhhhcCCCCCCCCCCeEEEeeeeecccCcccc
Q 003406 757 LYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRP 820 (823)
Q Consensus 757 Vf~S~H~D~n~Va~IegKC~Vl~f~ry~~~~~rr~~~g~~~~~~~~p~F~Cr~~Yd~~~~~f~~ 820 (823)
||-|.+.++|++.||++||+|++....+.....-.. .....|||+..|+...+.|..
T Consensus 123 ~~~s~~~~~~~~~~i~~k~~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~y~~~~~~~~~ 179 (784)
T 4ft4_B 123 VFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQL-------IESCDLYYDMSYSVAYSTFAN 179 (784)
T ss_dssp EEEEEEEEEEEGGGEEEECCEEECCTTSCHHHHHHH-------HHHCSEEESEEEETGGGEEEE
T ss_pred EEEeCcEEEechHHeeeeEEEEeeCccccchhhhhc-------cCCcceEeccccCccccCccC
Confidence 999999999999999999999997654333222212 011256777777666666653
No 9
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.35 E-value=3e-13 Score=107.89 Aligned_cols=49 Identities=37% Similarity=1.046 Sum_probs=44.9
Q ss_pred cccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 404 TCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 404 ~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
.|.+|++++++ +.||+||+|+++||++||+| +|.++|+| +|||+.|...
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p-~l~~~P~g-~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRP-ALYEVPDG-EWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCT-TCCSCCSS-CCSCTTTSCC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCC-CcCCCCCC-cEECcCcccc
Confidence 59999988766 89999999999999999999 79999999 9999999853
No 10
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.28 E-value=1.8e-12 Score=109.79 Aligned_cols=50 Identities=24% Similarity=0.519 Sum_probs=44.4
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+...|.+|+.+ +.||+||.|+++||++||+| +|..+|+| +|||+.|....
T Consensus 11 ~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P-~l~~~P~g-~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG----TDVLRCTHCAAAFHWRCHFP-AGTSRPGT-GLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC----TTCEECSSSCCEECHHHHCT-TTCCCCSS-SCCCTTTTTCC
T ss_pred CCCCcCCCCCC----CeEEECCCCCCceecccCCC-ccCcCCCC-CEECccccCCC
Confidence 34569999866 67999999999999999999 79999999 99999998654
No 11
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.25 E-value=2.9e-12 Score=106.51 Aligned_cols=49 Identities=33% Similarity=0.828 Sum_probs=44.5
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
+...|.+|+.+ +.||+||+|+++||++||.| +|.++|+| +|||+.|...
T Consensus 8 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~p-pl~~~p~g-~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG----GELLCCDTCPSSYHIHCLNP-PLPEIPNG-EWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSS-CCSSCCSS-CCCCTTTTTT
T ss_pred CCCcCCCCCCC----CCEEEcCCCCHHHcccccCC-CcCcCCCC-ccCChhhcCc
Confidence 45779999975 68999999999999999999 79999999 9999999864
No 12
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.24 E-value=3.7e-12 Score=107.16 Aligned_cols=50 Identities=36% Similarity=0.964 Sum_probs=45.0
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
++..|.+|+.+ +.||+||+|+++||++||.| +|..+|+| +|||+.|....
T Consensus 7 ~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p-pl~~~P~g-~W~C~~C~~~~ 56 (66)
T 1xwh_A 7 NEDECAVCRDG----GELICCDGCPRAFHLACLSP-PLREIPSG-TWRCSSCLQAT 56 (66)
T ss_dssp CCCSBSSSSCC----SSCEECSSCCCEECTTTSSS-CCSSCCSS-CCCCHHHHHTC
T ss_pred CCCCCccCCCC----CCEEEcCCCChhhcccccCC-CcCcCCCC-CeECccccCcc
Confidence 45679999976 68999999999999999999 79999999 99999998653
No 13
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.24 E-value=5.7e-12 Score=112.53 Aligned_cols=50 Identities=34% Similarity=0.846 Sum_probs=45.4
Q ss_pred cccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 400 SKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 400 ~~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
.+...|.+|+.+ +.||+||+|+++||++||.| +|..+|+| +|+|+.|...
T Consensus 23 ~n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~P-pL~~~P~g-~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP----GDLVMCNQCEFCFHLDCHLP-ALQDVPGE-EWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS----SCCEECTTSSCEECTTSSST-TCCCCCSS-SCCCCSCCCC
T ss_pred CCCCcCcCcCCC----CCEEECCCCCCceecccCCC-CCCCCcCC-CcCCccccCC
Confidence 355789999987 68999999999999999999 79999999 9999999864
No 14
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=5e-12 Score=110.02 Aligned_cols=50 Identities=28% Similarity=0.777 Sum_probs=45.6
Q ss_pred ccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccc
Q 003406 403 FTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 454 (823)
Q Consensus 403 ~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~ 454 (823)
..|.+|+..+++ +.||+||+|+++||++||+| +|..+|+|.+|||+.|..
T Consensus 27 c~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~P-pl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEP-NMQLLCDECNVAYHIYCLNP-PLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCS-TTEEECSSSCCEEETTSSSS-CCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCC-CCEEEcCCCCccccccccCC-CccCCCCCCCcCCcCccC
Confidence 479999988766 89999999999999999999 799999987899999974
No 15
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.23 E-value=3.8e-12 Score=108.69 Aligned_cols=50 Identities=28% Similarity=0.835 Sum_probs=45.4
Q ss_pred cccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 404 TCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 404 ~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
.|.+|++.+++ +.||+||+|+++||++||+| +|..+|+|.+|||+.|...
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~P-pl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDP-PLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSS-CCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCC-CcCCCCCCCCcCCcCccCc
Confidence 68899988766 89999999999999999999 7999999878999999853
No 16
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=3.6e-12 Score=103.96 Aligned_cols=48 Identities=33% Similarity=0.938 Sum_probs=43.8
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 454 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~ 454 (823)
+...|.+|+.+ +.||+||.|+++||++||.| +|..+|++ +|||+.|..
T Consensus 8 ~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~p-pl~~~p~g-~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDP-PLKTIPKG-MWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS----SCCEECSSSSCEECSSSSSS-CCCSCCCS-SCCCHHHHC
T ss_pred CCCCCccCCCC----CeEEEcCCCCcceECccCCC-CcCCCCCC-ceEChhhhC
Confidence 45779999986 68999999999999999999 79999999 999999974
No 17
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.23 E-value=4.5e-12 Score=105.36 Aligned_cols=49 Identities=31% Similarity=0.920 Sum_probs=44.5
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
+..+|.+|+.+ +.||+||+|+++||++||.| +|..+|+| +|||+.|...
T Consensus 10 ~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p-~l~~~p~g-~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQG----GEIILCDTCPRAYHMVCLDP-DMEKAPEG-KWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCC----SSEEECSSSSCEEEHHHHCT-TCCSCCCS-SCCCTTGGGG
T ss_pred CCCCCccCCCC----CcEEECCCCChhhhhhccCC-CCCCCCCC-ceECcccccc
Confidence 45779999976 68999999999999999999 79999999 9999999854
No 18
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.20 E-value=5.9e-12 Score=103.88 Aligned_cols=50 Identities=32% Similarity=0.881 Sum_probs=44.9
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+...|.+|+.+ +.||+||+|+++||++||.| +|..+|+| +|||+.|....
T Consensus 4 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~p-pl~~~p~g-~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDP-PLKTIPKG-MWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC----SSCEECSSSSCEECGGGSSS-CCSSCCCS-CCCCHHHHHHH
T ss_pred CCCCCcCCCCC----CcEEEcCCCCcCEECCcCCC-CcCCCCCC-ceEChhccChh
Confidence 45679999986 68999999999999999999 79999999 99999998653
No 19
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.19 E-value=4.8e-12 Score=112.26 Aligned_cols=54 Identities=22% Similarity=0.610 Sum_probs=46.8
Q ss_pred ccccccccccCCCC-CCceEecCCCCCcccccccccCcCCC----CCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANE-VETVVLCDACEKGFHLKCLQMNNQKG----IPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e-~~~MLlCDgCd~gYHl~CL~PppL~~----VPeG~dWyCp~Cl~~~ 456 (823)
....|.+|+.++.+ .+.||+||+|+++||++||+| +|.. +|+| +|||+.|+...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~P-pl~~~~~~~p~g-~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKP-QVTDKEVNDPRL-VWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSS-CCCHHHHHCTTC-CCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCC-cccccccCCCCC-CeeCccccchh
Confidence 45789999988653 278999999999999999999 6874 9999 99999998764
No 20
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.18 E-value=5.5e-12 Score=105.22 Aligned_cols=54 Identities=28% Similarity=0.723 Sum_probs=45.3
Q ss_pred ccccccccccCCCC-CCceEecCCCCCcccccccccCcCCC--C-CCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANE-VETVVLCDACEKGFHLKCLQMNNQKG--I-PRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e-~~~MLlCDgCd~gYHl~CL~PppL~~--V-PeG~dWyCp~Cl~~~ 456 (823)
+...|.+|+.++.+ .+.||+||+|+++||++||.| +|.. + |++ +|||+.|....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p-~l~~~~~~p~~-~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTP-HIDSSVIDSDE-KWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSS-CCCHHHHHSSC-CCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCC-cccccccCCCC-CEECCCCcCcc
Confidence 44679999987432 279999999999999999999 6876 4 889 99999998754
No 21
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.18 E-value=9.2e-12 Score=108.46 Aligned_cols=49 Identities=27% Similarity=0.867 Sum_probs=44.6
Q ss_pred ccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCC-cccccccc
Q 003406 403 FTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGE-WHCMSCLK 454 (823)
Q Consensus 403 ~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~d-WyCp~Cl~ 454 (823)
..|.+|++.+++ +.||+||+|+++||++||+| +|..+|+| + |||+.|..
T Consensus 27 C~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~P-pL~~~P~g-~~W~C~~C~~ 76 (77)
T 3shb_A 27 CACHLCGGRQDP-DKQLMCDECDMAFHIYCLDP-PLSSVPSE-DEWYCPECRN 76 (77)
T ss_dssp TSBTTTCCCSCG-GGEEECTTTCCEEETTTSSS-CCSSCCSS-SCCCCTTTC-
T ss_pred CcCCccCCCCCC-cceeEeCCCCCccCcccCCC-cccCCCCC-CceECcCccc
Confidence 369999998777 89999999999999999999 79999999 7 99999974
No 22
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.10 E-value=2e-11 Score=104.81 Aligned_cols=50 Identities=32% Similarity=0.849 Sum_probs=43.4
Q ss_pred ccccccccccCC--CCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 401 KAFTCQICKLTA--NEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 401 ~~~~C~VC~~g~--~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
+...|.+|+.++ ++ +.||+||+|+++||++||+| + .+|+| +|||+.|...
T Consensus 15 ~~~~C~vC~~~~s~~~-~~ll~CD~C~~~~H~~Cl~~-~--~vP~g-~W~C~~C~~~ 66 (71)
T 2ku3_A 15 EDAVCSICMDGESQNS-NVILFCDMCNLAVHQECYGV-P--YIPEG-QWLCRHCLQS 66 (71)
T ss_dssp SSCSCSSSCCCCCCSS-SCEEECSSSCCEEEHHHHTC-S--SCCSS-CCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCC-CCEEECCCCCCccccccCCC-C--cCCCC-CcCCccCcCc
Confidence 457799999875 34 89999999999999999988 3 59999 9999999865
No 23
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.09 E-value=3.6e-11 Score=120.24 Aligned_cols=50 Identities=28% Similarity=0.753 Sum_probs=45.5
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+...|.+|+.+ +.||+||+|+++||++||.| +|..+|+| +|+|+.|....
T Consensus 6 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p-~l~~~p~~-~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVP-TLLSFPSG-DWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC----EEEEECSSSSCEECTTTSSS-CCSSCCSS-CCCCTTTSCSS
T ss_pred CCCCCCCCCCC----CceEEcCCCCCccCCccCCC-CCCCCCCC-CEEeCceeCcc
Confidence 45779999977 67999999999999999999 79999999 99999999754
No 24
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=99.09 E-value=3.8e-11 Score=122.97 Aligned_cols=51 Identities=27% Similarity=0.840 Sum_probs=42.2
Q ss_pred cccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccc
Q 003406 402 AFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 454 (823)
Q Consensus 402 ~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~ 454 (823)
...|.+|+..+++ +.||+||+|+++||++||+| ||..+|+|.+|+|+.|..
T Consensus 174 ~c~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~P-PL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDP-DKQLMCDECDMAFHIYCLDP-PLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC---CCEECSSSCCEECSCC--C-CCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCC-CCeEEcCCCCcceeCccCCC-CcccCCCCCCCCCcCCcC
Confidence 3579999988766 89999999999999999999 799999987899999975
No 25
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.07 E-value=2.6e-11 Score=107.67 Aligned_cols=51 Identities=31% Similarity=0.831 Sum_probs=44.1
Q ss_pred ccccccccccCC--CCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTA--NEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~--~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+...|.+|+.++ ++ +.||+||+|+.+||++||.| + .+|+| +|||+.|....
T Consensus 24 ~~~~C~vC~~~~s~~~-~~ll~CD~C~~~fH~~Cl~p-~--~vP~g-~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNS-NVILFCDMCNLAVHQECYGV-P--YIPEG-QWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSE-EEEEECSSSCCCCCHHHHTC-S--SCCSS-CCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCC-CCEEECCCCCchhhcccCCC-C--ccCCC-ceECccccCcc
Confidence 457899999875 33 79999999999999999988 3 49999 99999999764
No 26
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.07 E-value=5e-11 Score=116.96 Aligned_cols=50 Identities=34% Similarity=0.792 Sum_probs=45.2
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
++..|.+|+.+ +.||+||+|+++||++||.| +|..+|+| +|+|+.|....
T Consensus 3 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p-~l~~~p~~-~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG----GELLCCEKCPKVFHLSCHVP-TLTNFPSG-EWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC----SSCEECSSSSCEECTTTSSS-CCSSCCSS-CCCCTTTSCSS
T ss_pred CCCccccCCCC----CeeeecCCCCcccCccccCC-CCCCCCCC-CEECccccCcc
Confidence 44679999977 67999999999999999999 79999999 99999999754
No 27
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.05 E-value=6.7e-11 Score=101.07 Aligned_cols=53 Identities=19% Similarity=0.600 Sum_probs=46.3
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+..+|.+|++.+++ +.||+||+|+.|||++|+.+ ++..+|.+ +|||+.|....
T Consensus 17 ~~~~C~~C~~~~~~-~~mi~CD~C~~wfH~~Cv~~-~~~~~~~~-~w~C~~C~~~~ 69 (75)
T 2k16_A 17 QIWICPGCNKPDDG-SPMIGCDDCDDWYHWPCVGI-MAAPPEEM-QWFCPKCANKI 69 (75)
T ss_dssp EEECBTTTTBCCSS-CCEEECSSSSSEEEHHHHTC-SSCCCSSS-CCCCTTTHHHH
T ss_pred CCcCCCCCCCCCCC-CCEEEcCCCCcccccccCCC-CccCCCCC-CEEChhccCch
Confidence 44679999998765 78999999999999999998 67778888 99999998764
No 28
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.03 E-value=8.1e-11 Score=108.39 Aligned_cols=50 Identities=32% Similarity=0.992 Sum_probs=45.7
Q ss_pred cccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 404 TCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 404 ~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
.|.+|+..+++ +.||+||+|+++||++||+| +|..+|+| +|||+.|....
T Consensus 60 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~p-pl~~~P~g-~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSEND-DQLLFCDDCDRGYHMYCLNP-PVAEPPEG-SWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTT-TTEEECSSSCCEEETTTSSS-CCSSCCSS-CCCCHHHHHHH
T ss_pred ccCcccccCCC-CceEEcCCCCccccccccCC-CccCCCCC-CeECccccchh
Confidence 69999988766 89999999999999999999 79999999 99999998653
No 29
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.01 E-value=1.7e-10 Score=105.88 Aligned_cols=49 Identities=31% Similarity=0.973 Sum_probs=43.8
Q ss_pred cccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccc
Q 003406 404 TCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 454 (823)
Q Consensus 404 ~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~ 454 (823)
.|.+|+..+.+++.||+||.|+++||++||+| +|.++|+| +|||+.|..
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p-~l~~~P~~-~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDP-PLTRMPKG-MWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSS-CCSSCCSS-CCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCC-CCCCCCCC-CeECCCCCC
Confidence 69999976444379999999999999999999 79999999 999999974
No 30
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.99 E-value=1.6e-10 Score=114.83 Aligned_cols=48 Identities=33% Similarity=0.863 Sum_probs=43.9
Q ss_pred ccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 403 FTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 403 ~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
..|.+|+.+ +.||+||+|+++||++||.| +|..+|.| +|+|+.|....
T Consensus 3 ~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p-~l~~~p~g-~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKP----GDLVMCNQCEFCFHLDCHLP-ALQDVPGE-EWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCC----SSCCCCTTTCCBCCSTTSTT-CCSSCCCT-TCCTTTTSCSC
T ss_pred CcCccCCCC----CceeECCCCCchhccccCCC-CcccCCCC-CCCCcCccCCC
Confidence 569999977 67999999999999999999 79999999 99999998653
No 31
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.96 E-value=2.9e-10 Score=103.50 Aligned_cols=52 Identities=37% Similarity=0.938 Sum_probs=46.7
Q ss_pred cccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccccCC
Q 003406 404 TCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNG 458 (823)
Q Consensus 404 ~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~~g 458 (823)
.|.+|++.+++ +.||+||.|+++||++||+| +|..+|++ +|||+.|.....+
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~p-pl~~~P~g-~W~C~~C~~c~~g 107 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQP-VMKSVPTN-GWKCKNCRICISG 107 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSS-CCSSCCSS-CCCCHHHHCCSCS
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCC-ccccCCCC-CcCCcCCcCcCCC
Confidence 69999988766 78999999999999999999 79999999 9999999876543
No 32
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.82 E-value=2.3e-09 Score=98.69 Aligned_cols=52 Identities=31% Similarity=0.609 Sum_probs=46.0
Q ss_pred ccccccccccCCCCCCceEecC--CCCCcccccccccCcCCCCCCCCCccccccccccCCCC
Q 003406 401 KAFTCQICKLTANEVETVVLCD--ACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNGKP 460 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCD--gCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~~gkp 460 (823)
+..+|.+|+.+ +.||+|| +|+++||++|| .|..+|+| +||||.|.....++.
T Consensus 14 ~~~~C~~C~~~----G~ll~CD~~~Cp~~fH~~Cl---~L~~~P~g-~W~Cp~c~C~~C~k~ 67 (107)
T 4gne_A 14 HEDYCFQCGDG----GELVMCDKKDCPKAYHLLCL---NLTQPPYG-KWECPWHQCDECSSA 67 (107)
T ss_dssp SCSSCTTTCCC----SEEEECCSTTCCCEECTGGG---TCSSCCSS-CCCCGGGBCTTTCSB
T ss_pred CCCCCCcCCCC----CcEeEECCCCCCcccccccC---cCCcCCCC-CEECCCCCCCcCCCC
Confidence 45779999965 7899999 89999999999 58999999 999999998877754
No 33
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.74 E-value=1e-08 Score=87.92 Aligned_cols=49 Identities=31% Similarity=0.837 Sum_probs=41.2
Q ss_pred ccccccccccCCCCCCceEecCC--CC-CcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDA--CE-KGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDg--Cd-~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+..+| +|++.++ +.||.||. |+ .|||+.|+ +|..+|.+ +|||+.|....
T Consensus 15 ~~~~C-~C~~~~~--g~MI~CD~~~C~~~wfH~~Cv---gl~~~p~g-~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACV---GLTTKPRG-KWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC--SSEECCSCSSCSCCCEETTTT---TCSSCCSS-CCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC--CCEeEeeCCCCCCccEecccC---CcCcCCCC-CEECCCCCccc
Confidence 34678 8998754 58999999 77 79999999 68899999 99999998653
No 34
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.74 E-value=6.4e-09 Score=93.82 Aligned_cols=48 Identities=27% Similarity=0.767 Sum_probs=41.5
Q ss_pred ccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 403 FTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 403 ~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
..| +|+..+++ +.||+||.|+.|||+.|+.| ++..+|+ +|+|+.|...
T Consensus 29 vrC-iC~~~~~~-~~mi~Cd~C~~w~H~~C~~~-~~~~~p~--~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDD-GYMICCDKCSVWQHIDCMGI-DRQHIPD--TYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCS-SCEEEBTTTCBEEETTTTTC-CTTSCCS--SBCCTTTSSS
T ss_pred EEe-ECCCccCC-CcEEEcCCCCCcCcCcCCCC-CccCCCC--CEECCCCcCC
Confidence 457 89988766 89999999999999999999 6888885 6999999743
No 35
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.72 E-value=3.6e-09 Score=87.79 Aligned_cols=46 Identities=30% Similarity=0.887 Sum_probs=39.2
Q ss_pred cccccccccCCCCCCceEecCC--CC-CcccccccccCcCCCCCCCCCcccccccc
Q 003406 402 AFTCQICKLTANEVETVVLCDA--CE-KGFHLKCLQMNNQKGIPRGGEWHCMSCLK 454 (823)
Q Consensus 402 ~~~C~VC~~g~~e~~~MLlCDg--Cd-~gYHl~CL~PppL~~VPeG~dWyCp~Cl~ 454 (823)
..+| +|++.++ +.||.||+ |. .|||+.|+ +|..+|.| +|||+.|..
T Consensus 10 ~~~C-~C~~~~~--g~mi~CD~cdC~~~wfH~~Cv---gl~~~p~g-~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACV---GLTTKPRG-KWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC--SEEEECSCTTCSSCEEETGGG---TCSSCCSS-CCCCHHHHC
T ss_pred CCEE-ECCCcCC--CCEEEeCCCCCCCceEehhcC---CCCcCCCC-CEECcCccC
Confidence 4567 8998754 58999999 55 89999999 68899999 999999975
No 36
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.66 E-value=2.3e-08 Score=89.77 Aligned_cols=49 Identities=31% Similarity=0.837 Sum_probs=41.0
Q ss_pred ccccccccccCCCCCCceEecCC--CC-CcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDA--CE-KGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDg--Cd-~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+..+| +|++.++ +.||.||. |. .|||+.|+ .|..+|.+ +|||+.|....
T Consensus 35 e~~yC-iC~~~~~--g~MI~CD~~dC~~~WfH~~CV---gl~~~p~g-~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACV---GLTTKPRG-KWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC--SCCCCCSCSSCSCCCCCSTTT---TCSSCCCS-SCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC--CCEeEecCCCCCCCCEecccC---CcCcCCCC-CEECcCccCcC
Confidence 34668 9998754 58999999 66 79999999 68899999 99999998653
No 37
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.66 E-value=7.2e-09 Score=85.91 Aligned_cols=47 Identities=28% Similarity=0.898 Sum_probs=39.8
Q ss_pred ccccccccccCCCCCCceEecCC--CC-CcccccccccCcCCCCCCCCCcccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDA--CE-KGFHLKCLQMNNQKGIPRGGEWHCMSCLK 454 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDg--Cd-~gYHl~CL~PppL~~VPeG~dWyCp~Cl~ 454 (823)
+..+| +|++.++ +.||.||. |+ .|||+.|+ +|..+|.| +|||+.|..
T Consensus 8 e~~yC-~C~~~~~--g~mi~CD~~~C~~~wfH~~Cv---gl~~~p~~-~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY--GEMIGCDNPDCPIEWFHFACV---DLTTKPKG-KWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC--SEEEECSCTTCSSCEEETGGG---TCSSCCSS-CCCCHHHHC
T ss_pred CCcEE-ECCCCCC--CCeeEeeCCCCCCCCEecccC---CcccCCCC-CEECcCccC
Confidence 34567 9998753 58999999 76 69999999 68899999 999999975
No 38
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.65 E-value=8e-09 Score=86.47 Aligned_cols=48 Identities=25% Similarity=0.684 Sum_probs=39.8
Q ss_pred ccccccccccCCCCCCceEecCCCC---CcccccccccCcCCCCCCCCCccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACE---KGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd---~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
+..+| +|++.++ +.||.||.|+ .|||+.|+ +|...|.+ +|||+.|...
T Consensus 10 e~~yC-~C~~~~~--g~MI~CD~c~C~~~WfH~~Cv---gl~~~p~~-~w~Cp~C~~~ 60 (62)
T 2g6q_A 10 EPTYC-LCNQVSY--GEMIGCDNEQCPIEWFHFSCV---SLTYKPKG-KWYCPKCRGD 60 (62)
T ss_dssp CCEET-TTTEECC--SEEEECSCTTCSSCEEETGGG---TCSSCCSS-CCCCHHHHTC
T ss_pred CCcEE-ECCCCCC--CCeeeeeCCCCCcccEecccC---CcCcCCCC-CEECcCcccC
Confidence 34568 9998644 5899999955 99999999 67889999 9999999853
No 39
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.60 E-value=1.8e-08 Score=90.25 Aligned_cols=49 Identities=29% Similarity=0.790 Sum_probs=40.8
Q ss_pred ccccccccccCCCCCCceEecCCCC---CcccccccccCcCCCCCCCCCccccc-ccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACE---KGFHLKCLQMNNQKGIPRGGEWHCMS-CLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd---~gYHl~CL~PppL~~VPeG~dWyCp~-Cl~~~ 456 (823)
+..+| +|+..+++ .||.||.|+ .|||+.|+ +|..+|.+ +|||+. |....
T Consensus 25 ~~~yC-iC~~~~~g--~MI~CD~c~C~~eWfH~~CV---gl~~~p~~-~W~Cp~cC~~~~ 77 (90)
T 2jmi_A 25 EEVYC-FCRNVSYG--PMVACDNPACPFEWFHYGCV---GLKQAPKG-KWYCSKDCKEIA 77 (90)
T ss_dssp CSCCS-TTTCCCSS--SEECCCSSSCSCSCEETTTS---SCSSCTTS-CCCSSHHHHHHH
T ss_pred CCcEE-EeCCCCCC--CEEEecCCCCccccCcCccC---CCCcCCCC-CccCChhhcchh
Confidence 34678 99986544 799999977 89999999 68899999 999999 97543
No 40
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=98.52 E-value=2.9e-08 Score=102.11 Aligned_cols=121 Identities=14% Similarity=0.158 Sum_probs=81.9
Q ss_pred ECCEEEeecCEEEEecCCCCCCh-hhhhhhhccCCCCceEEEeeeeccCCCCCCc----cCCCC---------C------
Q 003406 692 IGGVTYKVKDHVLLHSSNNKLMP-SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEA----VGCPC---------A------ 751 (823)
Q Consensus 692 ~~GetyrvgDcVLl~S~~~~~~P-akI~~lWE~~~sG~~~v~v~WYYrPE~t~~~----~grp~---------~------ 751 (823)
-||..|++||+||++.+.....= +-|..+=-..-+.=.-+.|.||||..+.... .-.|. .
T Consensus 48 ~Dg~~~~~GDsVlv~~~~~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 127 (232)
T 2fl7_A 48 SDGLSFGKGESVIFNDNVTETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEFYKDKFF 127 (232)
T ss_dssp TTCCEECTTCEEEEEETTTTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHHHHHHHH
T ss_pred cCCcEEeCCCEEEEecCCCCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhhh
Confidence 48999999999999886533332 3232221111122356778999999986431 00222 1
Q ss_pred --CCcccccccCCcccccccccccceEEeCcchhhhhHHHhhhcCCCCCCCCCCeEEEeeeeecccCccccC
Q 003406 752 --PESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPV 821 (823)
Q Consensus 752 --~~~NEVf~S~H~D~n~Va~IegKC~Vl~f~ry~~~~~rr~~~g~~~~~~~~p~F~Cr~~Yd~~~~~f~~v 821 (823)
..+||||.+.+.++..+.+|.++|.||++.+|..+.. . ....-.||||+.+|+..+.|.+|
T Consensus 128 ~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~~-------d--~~~~~tFf~R~~cd~~~~~f~~i 190 (232)
T 2fl7_A 128 NEVNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSSI-------D--KIEDRDFLVRYACEPTAEKFVPI 190 (232)
T ss_dssp HHSCTTEEEEEEEEEEECGGGEEEECEEECTTTC----------------CTTTEEEEEEECCTTSCSCEEC
T ss_pred cccccceEEEeccHHHHHHHhhhhheEeccHHHHHHhcc-------c--ccCCceEEEEEEEcCCcCccccc
Confidence 4699999999999999999999999999999954321 1 12234999999999988878754
No 41
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=98.51 E-value=2.9e-08 Score=102.44 Aligned_cols=121 Identities=12% Similarity=0.054 Sum_probs=85.2
Q ss_pred ECCEEEeecCEEEEecCCCCCCh-hhhhhhhccCCCCceEEEeeeeccCCCCCCc----cCCCC---------C------
Q 003406 692 IGGVTYKVKDHVLLHSSNNKLMP-SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEA----VGCPC---------A------ 751 (823)
Q Consensus 692 ~~GetyrvgDcVLl~S~~~~~~P-akI~~lWE~~~sG~~~v~v~WYYrPE~t~~~----~grp~---------~------ 751 (823)
-||..|++||+||++.+.....= +-|..+=-..-+.=.-+.|.||||..+.... .-.|. .
T Consensus 48 ~Dg~~~~~GDsVlv~~~~~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 127 (238)
T 1m4z_A 48 SDGIKLGRGDSVVMHNEAAGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYYNKLFS 127 (238)
T ss_dssp TTCCEECTTCEEEEEETTTTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHHHHHHHH
T ss_pred cCCcEEeCCCEEEEecCCCCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhhh
Confidence 48999999999999886533332 3233221121122345677999999986431 00222 1
Q ss_pred --CCcccccccCCcccccccccccceEEeCcchhhhhHHHhhhcCCCCCCCCCCeEEEeeeeecccCccccC
Q 003406 752 --PESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPV 821 (823)
Q Consensus 752 --~~~NEVf~S~H~D~n~Va~IegKC~Vl~f~ry~~~~~rr~~~g~~~~~~~~p~F~Cr~~Yd~~~~~f~~v 821 (823)
..+||||.+.+.++..+.+|.++|.||++.+|..+.. . . ...-.||||+.+|+..+.|.+|
T Consensus 128 ~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~i~~-d-~-------~~~~tFf~R~~cd~~~~~f~~i 190 (238)
T 1m4z_A 128 ETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKG-N-V-------DPERDFTVRYICEPTGEKFVDI 190 (238)
T ss_dssp HHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGG-G-C-------CTTTEEEEEEECCTTSCCCEEC
T ss_pred cccccceEEEeccHHHHhHHhhhhheEeccHHHHhhhcc-c-c-------ccCceEEEEEEEcCCcCccccc
Confidence 4699999999999999999999999999999965433 1 1 2224999999999987878754
No 42
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.44 E-value=1.1e-07 Score=86.43 Aligned_cols=50 Identities=22% Similarity=0.703 Sum_probs=43.6
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCL 453 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl 453 (823)
++..|.+|+.+++. +.||+|+.|++.||++||.+ .+..++.+ .|+|+.|.
T Consensus 6 ~~~~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~-~~~~~~~~-~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDI-AVTPLKRA-GWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCT-TTSEECSSSCCEECTTTTTC-CCCTTTST-TCCCTTTC
T ss_pred CCCCCcCCCCCCCC-cCCeECCCCCCCcChHHhCC-cccccccc-CccCCcCC
Confidence 45779999988655 67899999999999999999 67778888 99999995
No 43
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.42 E-value=1.1e-07 Score=78.88 Aligned_cols=53 Identities=26% Similarity=0.526 Sum_probs=41.0
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCC-CCCCccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIP-RGGEWHCMSCLKL 455 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VP-eG~dWyCp~Cl~~ 455 (823)
+..+|.+|++.+++.+.||.||.|+.|||..|+.. ...... .. +|+|+.|...
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl-~~~~~~~~~-~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKI-TPARAEHIK-QYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTC-CTTGGGGCS-SCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCc-ChhHhcCCC-cEECCCCcCc
Confidence 34679999998765589999999999999999954 222222 24 7999999864
No 44
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=1.1e-07 Score=81.27 Aligned_cols=47 Identities=30% Similarity=0.716 Sum_probs=39.0
Q ss_pred ccccccccCCCCCCceEecCCCC---CcccccccccCcCCCCCCCCCcccccccccc
Q 003406 403 FTCQICKLTANEVETVVLCDACE---KGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 403 ~~C~VC~~g~~e~~~MLlCDgCd---~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
.+| +|+..++ +.||.||.|+ .|||+.|+ +|...|.+ +|||+.|....
T Consensus 7 ~yC-~C~~~~~--g~MI~CD~cdC~~~WfH~~Cv---gl~~~p~~-~w~Cp~C~~~~ 56 (70)
T 1x4i_A 7 GYC-ICNQVSY--GEMVGCDNQDCPIEWFHYGCV---GLTEAPKG-KWYCPQCTAAM 56 (70)
T ss_dssp CCS-TTSCCCC--SSEECCSCTTCSCCCEEHHHH---TCSSCCSS-CCCCHHHHHHH
T ss_pred eEE-EcCCCCC--CCEeEeCCCCCCccCCccccc---ccCcCCCC-CEECCCCCccc
Confidence 557 5987743 5899999986 89999999 67788999 99999998653
No 45
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.34 E-value=9.2e-08 Score=82.07 Aligned_cols=54 Identities=31% Similarity=0.693 Sum_probs=41.1
Q ss_pred ccccccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCC-------CCCCcccccccccc
Q 003406 397 EYMSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIP-------RGGEWHCMSCLKLS 456 (823)
Q Consensus 397 ey~~~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VP-------eG~dWyCp~Cl~~~ 456 (823)
.+..+..+| +|++.++. +.||.||.|+.|||..|+. |...+ .. +|+|+.|....
T Consensus 11 ~~d~~~~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvg---l~~~~~~~l~~~~~-~~~C~~C~~~~ 71 (76)
T 1wem_A 11 VYDPNALYC-ICRQPHNN-RFMICCDRCEEWFHGDCVG---ISEARGRLLERNGE-DYICPNCTILS 71 (76)
T ss_dssp SCCTTCCCS-TTCCCCCS-SCEEECSSSCCEEEHHHHS---CCHHHHHHHHHHTC-CCCCHHHHHHS
T ss_pred ccCCCCCEE-ECCCccCC-CCEEEeCCCCCcEeCeEEc---cchhhhhhccCCCC-eEECcCCcCcc
Confidence 333344667 89998775 7999999999999999995 43322 34 79999998654
No 46
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=98.32 E-value=1.6e-07 Score=85.89 Aligned_cols=50 Identities=30% Similarity=0.809 Sum_probs=41.5
Q ss_pred ccccccccCCCCCCceEecC-CCCCcccccccccCcCCC--------CCCCCCcccccccccc
Q 003406 403 FTCQICKLTANEVETVVLCD-ACEKGFHLKCLQMNNQKG--------IPRGGEWHCMSCLKLS 456 (823)
Q Consensus 403 ~~C~VC~~g~~e~~~MLlCD-gCd~gYHl~CL~PppL~~--------VPeG~dWyCp~Cl~~~ 456 (823)
..|.+|++.+++++.|+.|| .|+.|||..|+ +|+. .|.+ +|+|+.|....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CV---glt~~~~~~i~~~~~~-~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECT---GMTESAYGLLTTEASA-VWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGT---TCCHHHHHHHHHCTTE-EECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccC---CcCHHHHHhhccCCCC-CEECccccCcC
Confidence 56999999976657899998 99999999999 4443 3667 99999999754
No 47
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=98.31 E-value=1e-07 Score=80.57 Aligned_cols=48 Identities=29% Similarity=0.818 Sum_probs=40.7
Q ss_pred cccccccccCCCCCCceEecC-CCCCcccccccccCcCCC--------CCCCCCccccccc
Q 003406 402 AFTCQICKLTANEVETVVLCD-ACEKGFHLKCLQMNNQKG--------IPRGGEWHCMSCL 453 (823)
Q Consensus 402 ~~~C~VC~~g~~e~~~MLlCD-gCd~gYHl~CL~PppL~~--------VPeG~dWyCp~Cl 453 (823)
...|.+|++.++++..|+.|| +|+.|||..|+. |+. .|.+ +|+|+.|.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg---lt~~~~~~l~~e~~~-~w~C~~C~ 64 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTG---MTETAYGLLTAEASA-VWGCDTCM 64 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT---CCHHHHHHHHHCTTE-EECCHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccC---CCHHHHHHhhccCCC-cEECcCcc
Confidence 467999999987768999999 999999999994 443 4777 99999996
No 48
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.27 E-value=2e-07 Score=89.70 Aligned_cols=48 Identities=25% Similarity=0.621 Sum_probs=42.2
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCC-----C--CCCCCCcccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQK-----G--IPRGGEWHCMSCLK 454 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~-----~--VPeG~dWyCp~Cl~ 454 (823)
.+.+|.+|+.+ +.||+||.|.+.||+.||.| +|. + .|.+ +|+|+.|..
T Consensus 62 ~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p-~l~~~~l~~i~~p~~-~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG----GNLICCDFCHNAFCKKCILR-NLGRKELSTIMDENN-QWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC----SSEEECSSSCCEEEHHHHHH-HTCHHHHHHHHTSTT-CCCCTTTCC
T ss_pred CCCeecccCCC----CcEEeCCCCCCeeeHhhcCC-CCChhhhhhcccCCC-CCEeecccC
Confidence 45789999988 78999999999999999998 565 3 4889 999999984
No 49
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.24 E-value=5.4e-07 Score=76.61 Aligned_cols=49 Identities=22% Similarity=0.676 Sum_probs=39.5
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 454 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~ 454 (823)
+..+| +|++.+++ +.||.||.|+.|||..|+.. ....+| + .|+|+.|..
T Consensus 18 ~~~~C-iC~~~~~~-~~MIqCd~C~~WfH~~Cvgi-~~~~~~-~-~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAG-RPMIECNECHTWIHLSCAKI-RKSNVP-E-VFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTT-CCEEECTTTCCEEETTTTTC-CTTSCC-S-SCCCHHHHT
T ss_pred CceEe-ECCCcCCC-CCEEECCCCCccccccccCc-CcccCC-C-cEECCCCCC
Confidence 34668 99988765 78999999999999999976 333455 4 799999974
No 50
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.23 E-value=6e-07 Score=76.47 Aligned_cols=52 Identities=27% Similarity=0.776 Sum_probs=39.6
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
...+| +|+..++..+.||.||.|+.|||+.|+.......+| . +|+|+.|...
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~-~-~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALP-S-KFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCC-S-CCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCC-C-cEECCCccCC
Confidence 34678 799886553579999999999999999652222344 4 7999999865
No 51
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.21 E-value=3.9e-07 Score=78.93 Aligned_cols=49 Identities=22% Similarity=0.601 Sum_probs=38.6
Q ss_pred cccccccccCCCCCCceEecCCCCCcccccccccCcCCCCC---CCCCccccccccc
Q 003406 402 AFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIP---RGGEWHCMSCLKL 455 (823)
Q Consensus 402 ~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VP---eG~dWyCp~Cl~~ 455 (823)
..+| +|++.+++.+.||.||.|+.|||..|+.. ...+ .. +|+|+.|...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl---~~~~~~~~~-~~~C~~C~~~ 63 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGI---EEENAVDID-IYHCPDCEAV 63 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTC---CHHHHTTCS-BBCCTTTTTT
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCc---ccccccCCC-eEECCCcccc
Confidence 3567 99998764489999999999999999954 3322 24 7999999865
No 52
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.18 E-value=2e-07 Score=90.34 Aligned_cols=54 Identities=24% Similarity=0.594 Sum_probs=40.5
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+..+| +|+..+++.+.||.||.|+.|||..|+..........+ +|+|+.|....
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~-~~~C~~C~~~~ 60 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELID-EYVCPQCQSTE 60 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCS-SCCCHHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCcc-CeecCCCcchh
Confidence 34679 99998765578999999999999999954211112245 89999998653
No 53
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=98.16 E-value=4.4e-07 Score=73.08 Aligned_cols=47 Identities=23% Similarity=0.582 Sum_probs=37.3
Q ss_pred ccccccccCCCCCCceEecC-CCCCcccccccccCcCCCCC--CCCCccccccc
Q 003406 403 FTCQICKLTANEVETVVLCD-ACEKGFHLKCLQMNNQKGIP--RGGEWHCMSCL 453 (823)
Q Consensus 403 ~~C~VC~~g~~e~~~MLlCD-gCd~gYHl~CL~PppL~~VP--eG~dWyCp~Cl 453 (823)
..|.+|++.+++++.||.|| .|+.|||+.|++ |...+ .. +|+|+.|.
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvg---l~~~~~~~~-~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVG---VSPEMAENE-DYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTT---CCHHHHHHS-CCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccC---CCccccCCC-CEECCCCC
Confidence 35889999987658899999 899999999994 44332 35 89999994
No 54
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=98.11 E-value=5.9e-07 Score=77.17 Aligned_cols=52 Identities=29% Similarity=0.722 Sum_probs=38.7
Q ss_pred ccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 403 FTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 403 ~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
.+| +|+..+++++.||.||.|+.|||..|+.. .....+....|+|+.|....
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~-~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGV-EEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTC-CTTTGGGBSSCCCHHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccc-cccccCCCCEEECCCCcccC
Confidence 445 99988765579999999999999999954 22222332279999998653
No 55
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.06 E-value=1.6e-06 Score=75.12 Aligned_cols=49 Identities=20% Similarity=0.569 Sum_probs=38.4
Q ss_pred cccccccccCCCCCCceEecC--CCCCcccccccccCcCCCCCC-------CCCcccccccccc
Q 003406 402 AFTCQICKLTANEVETVVLCD--ACEKGFHLKCLQMNNQKGIPR-------GGEWHCMSCLKLS 456 (823)
Q Consensus 402 ~~~C~VC~~g~~e~~~MLlCD--gCd~gYHl~CL~PppL~~VPe-------G~dWyCp~Cl~~~ 456 (823)
..+| +|+..++. +.||.|| .|+.|||..|+. |...+. . .|||+.|....
T Consensus 16 ~~~C-iC~~~~~~-g~MI~CD~~~C~~W~H~~CVg---i~~~~~~~~~~~~~-~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLET-DSMIQCEDPRCHVWQHVGCVI---LPDKPMDGNPPLPE-SFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCC-SCEEECSSTTTCCEEEHHHHS---CCCTTTCSCSCSCS-SCCCHHHHHCC
T ss_pred CEEe-ECCCcCCC-CCEEEECCccCCccccCEEEc---cccccccccccCCC-CEECCCCCccc
Confidence 3568 89988555 8999999 999999999995 444331 3 79999998653
No 56
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.99 E-value=8e-07 Score=84.41 Aligned_cols=48 Identities=27% Similarity=0.683 Sum_probs=41.2
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCc-----CCCC--CCCCCcccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNN-----QKGI--PRGGEWHCMSCLK 454 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~Ppp-----L~~V--PeG~dWyCp~Cl~ 454 (823)
.+.+|.+|+.+ +.+++||.|.+.||..||.| + |.++ |.+ +|+|..|..
T Consensus 56 ~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~-~lg~~~l~~i~~~~~-~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG----GNLICCDFCHNAFCKKCILR-NLGRRELSTIMDENN-QWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC----SEEEECSSSSCEEEHHHHHH-HTCHHHHHHHTCTTS-CCCCTTTCC
T ss_pred CCCcCeecCCC----CeeEecCCCchhhhHHHhCC-CcchhHHHHhccCCC-CeEcCCcCC
Confidence 45679999988 78999999999999999998 5 3455 788 999999975
No 57
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.86 E-value=6.1e-06 Score=66.32 Aligned_cols=46 Identities=24% Similarity=0.735 Sum_probs=36.4
Q ss_pred cccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccc
Q 003406 404 TCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 454 (823)
Q Consensus 404 ~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~ 454 (823)
+| +|++.+++ +.||.||.|+.|||..|+.. ....+| . .|+|+.|..
T Consensus 6 ~C-~C~~~~~~-~~MI~Cd~C~~W~H~~Cvgi-~~~~~~-~-~~~C~~C~~ 51 (52)
T 3o7a_A 6 TC-FCMKPFAG-RPMIECNECHTWIHLSCAKI-RKSNVP-E-VFVCQKCRD 51 (52)
T ss_dssp CS-TTCCBCTT-CCEEECTTTCCEEETTTTTC-CGGGCC-S-SCCCHHHHT
T ss_pred EE-EeCCcCCC-CCEEEcCCCCccccccccCC-CcccCC-C-cEECcCCCC
Confidence 34 79887665 89999999999999999965 233455 3 799999963
No 58
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.81 E-value=9.1e-06 Score=68.63 Aligned_cols=49 Identities=24% Similarity=0.663 Sum_probs=35.4
Q ss_pred ccccccccCCCCCCceEecCC--CCCcccccccccCc--C--CCCCCCCCccccccccc
Q 003406 403 FTCQICKLTANEVETVVLCDA--CEKGFHLKCLQMNN--Q--KGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 403 ~~C~VC~~g~~e~~~MLlCDg--Cd~gYHl~CL~Ppp--L--~~VPeG~dWyCp~Cl~~ 455 (823)
.+| +|+..++. +.||.||+ |+.|||..|+.... . ..+|+ .|||+.|+..
T Consensus 11 v~C-~C~~~~~~-g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~--~~~C~~Cr~~ 65 (68)
T 2rsd_A 11 VRC-ICSSTMVN-DSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPP--VFYCELCRLS 65 (68)
T ss_dssp ECC-TTCCCSCC-SCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCS--SCCCHHHHHH
T ss_pred EEe-ECCCCcCC-CCEEEECCCCCCCeEchhhCCCCcccccccCCCC--cEECcCccCc
Confidence 456 89887666 89999995 99999999994310 0 11232 5999999743
No 59
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.80 E-value=3.3e-06 Score=77.74 Aligned_cols=50 Identities=28% Similarity=0.674 Sum_probs=39.3
Q ss_pred ccccccccCCCC------CCceEecCCCCCcccccccccCc--CCCCCCCCCccccccc
Q 003406 403 FTCQICKLTANE------VETVVLCDACEKGFHLKCLQMNN--QKGIPRGGEWHCMSCL 453 (823)
Q Consensus 403 ~~C~VC~~g~~e------~~~MLlCDgCd~gYHl~CL~Ppp--L~~VPeG~dWyCp~Cl 453 (823)
.+|.+|..++.. .+.||.|++|++.||.+||.+.. +..+|.+ .|+|+.|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~-~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTY-KWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHT-TCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCC-ccCccccC
Confidence 469999876521 26999999999999999998721 1257888 99999994
No 60
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=97.76 E-value=5.3e-06 Score=82.69 Aligned_cols=53 Identities=19% Similarity=0.647 Sum_probs=39.8
Q ss_pred ccccccccCCCCCC---ceEecCCCCCcccccccccCc-----CCCCCCCCCccccccccc
Q 003406 403 FTCQICKLTANEVE---TVVLCDACEKGFHLKCLQMNN-----QKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 403 ~~C~VC~~g~~e~~---~MLlCDgCd~gYHl~CL~Ppp-----L~~VPeG~dWyCp~Cl~~ 455 (823)
.+|.+|++.+++++ .||.||.|+.|||..|..... +..+|+..+|+|+.|...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 46999999988743 399999999999999995411 012354226999999864
No 61
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.73 E-value=3.3e-06 Score=77.42 Aligned_cols=52 Identities=23% Similarity=0.620 Sum_probs=39.7
Q ss_pred ccccccccccCCC-----CCCceEecCCCCCcccccccccC-c-CCCCCCCCCccccccc
Q 003406 401 KAFTCQICKLTAN-----EVETVVLCDACEKGFHLKCLQMN-N-QKGIPRGGEWHCMSCL 453 (823)
Q Consensus 401 ~~~~C~VC~~g~~-----e~~~MLlCDgCd~gYHl~CL~Pp-p-L~~VPeG~dWyCp~Cl 453 (823)
...+|.+|...+. ..+.||.|+.|++.||++||+.. . ...++.+ .|+|+.|.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~-~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKAL-RWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTS-CCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhcc-ccccccCC
Confidence 3467999986531 12699999999999999999641 1 2357788 99999994
No 62
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=97.54 E-value=1.3e-05 Score=90.18 Aligned_cols=49 Identities=24% Similarity=0.625 Sum_probs=38.5
Q ss_pred ccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCC---CCCcccccccccc
Q 003406 403 FTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPR---GGEWHCMSCLKLS 456 (823)
Q Consensus 403 ~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPe---G~dWyCp~Cl~~~ 456 (823)
.+| +|+..+++.+.||.||.|+.|||..|++ +...+. + +|+|+.|....
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvg---l~~~~~~~~~-~~~C~~C~~~~ 89 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVG---VEEHHAVDID-LYHCPNCAVLH 89 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHT---CCGGGGGGEE-EBCCHHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecC---cCcccccCCC-EEECCCCcCCc
Confidence 456 9998876448999999999999999994 444432 3 69999998653
No 63
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=97.23 E-value=2.9e-05 Score=86.58 Aligned_cols=49 Identities=24% Similarity=0.586 Sum_probs=38.4
Q ss_pred cccccccCCCCCCceEecCCCCCcccccccccCcCCCCC--C-CCCcccccccccc
Q 003406 404 TCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIP--R-GGEWHCMSCLKLS 456 (823)
Q Consensus 404 ~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VP--e-G~dWyCp~Cl~~~ 456 (823)
.+++|+..+++.+.||.||.|+.|||..|++ |...+ . + .|+|+.|....
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVg---i~~~~~~~~~-~y~C~~C~~~~ 57 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVG---VEEEKAADID-LYHCPNCEVLH 57 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHT---CCHHHHTTEE-ECCCHHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCC---cCcccccCCC-EEECCCCcccc
Confidence 4559998876558999999999999999994 44332 2 4 79999998654
No 64
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=97.20 E-value=0.00011 Score=83.16 Aligned_cols=49 Identities=14% Similarity=0.359 Sum_probs=33.1
Q ss_pred ccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 407 ICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 407 VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
.+....+++..|+.||.|+.|||..|++...-..-..+ .|+||.|....
T Consensus 47 k~~~~~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~-~y~Cp~C~~~~ 95 (528)
T 3pur_A 47 KSHHHKKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYE-KFFCPKCVPHT 95 (528)
T ss_dssp CTTTTTTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEE-ECCCTTTHHHH
T ss_pred ccccCCCcCCCEEECCCCCcCCCCcCCCCChhHhcCCC-eEECcCCcCCC
Confidence 33333334478999999999999999954211112224 79999998753
No 65
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.09 E-value=3.6e-05 Score=69.35 Aligned_cols=90 Identities=18% Similarity=0.358 Sum_probs=63.6
Q ss_pred CCCcccCcCcccccccccCCCCccccCCCcceeecCCCCCCCchhhhHHHHHhcCCCCCCCCCCCCCCcccccccccccc
Q 003406 328 TAPQAVRDQSFRPFISQTGNMPNVHQPLQGTNIVQAPQFGSNHGEIAKIVQKLLHPKLPQHPTWTPPSREYMSKAFTCQI 407 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~SNsCPiCRq~F~gI~~Vq~P~~~s~hkeIaKiVqkll~pkl~~~psw~p~s~ey~~~~~~C~V 407 (823)
.-+|.+|..||..|-+..++||+||+.|....+.. + .+ ..+...|.+
T Consensus 31 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~---l-----------------~i-------------~~~~~~C~i 77 (133)
T 4ap4_A 31 ECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP---I-----------------YI-------------GSGTVSCPI 77 (133)
T ss_dssp TTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEE---C-----------------BC-------------SSSSCBCTT
T ss_pred CCCChhhHHHHHHHHHhCCCCCCCCCcCccccccc---c-----------------cc-------------CCCCCCCCC
Confidence 35899999999999998999999999998555331 0 00 012356999
Q ss_pred cccCCCCC---CceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 408 CKLTANEV---ETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 408 C~~g~~e~---~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
|.....+. +..+..-.|+..||..|+.. -+.. ...||.|....
T Consensus 78 C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~-~~~~-----~~~CP~Cr~~~ 123 (133)
T 4ap4_A 78 CMDGYSEIVQNGRLIVSTECGHVFCSQCLRD-SLKN-----ANTCPTCRKKI 123 (133)
T ss_dssp TCCBHHHHHHTTCCEEEETTSBEEEHHHHHH-HHHH-----CSBCTTTCCBC
T ss_pred CCCccccccccCcceEeCCCCChhhHHHHHH-HHHc-----CCCCCCCCCcC
Confidence 98654321 23445668999999999976 2321 35899998653
No 66
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.93 E-value=0.00027 Score=63.07 Aligned_cols=53 Identities=23% Similarity=0.633 Sum_probs=40.3
Q ss_pred cccccccccccCCCCCCceEecCCCCCcccccccccCc-----------CCCCCCCCCccccccccc
Q 003406 400 SKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNN-----------QKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 400 ~~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~Ppp-----------L~~VPeG~dWyCp~Cl~~ 455 (823)
.++..|.||..-.. +.|+-|..|.+.||..||.+.+ +...+.. -|.|+.|...
T Consensus 13 ~~D~~C~VC~~~t~--~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~-GWSC~~CenL 76 (89)
T 1wil_A 13 VNDEMCDVCEVWTA--ESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTET-GWSCHYCDNI 76 (89)
T ss_dssp CCSCCCTTTCCCCS--SCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSS-SCCCTTTCCC
T ss_pred CCCcccCccccccc--cceeccccccccccHhhcccccccccHHHHHHHHccCCCC-Cccccccchh
Confidence 35577999996543 5889999999999999998732 2333444 6999999755
No 67
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=96.55 E-value=0.00054 Score=62.47 Aligned_cols=50 Identities=24% Similarity=0.523 Sum_probs=33.8
Q ss_pred ccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCC---CCccccccccc
Q 003406 405 CQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRG---GEWHCMSCLKL 455 (823)
Q Consensus 405 C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG---~dWyCp~Cl~~ 455 (823)
|..|...++....||.|+.|+.+||..|+.+ ..+.++.+ ..|+|+.|...
T Consensus 62 c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~-~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 62 VDQNEETQDFEKKLMECCICNEIVHPGCLQM-DGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp BCCHHHHCCGGGSCEEETTTCCEECGGGCCS-CCCCEECSSSSSEEECTTTC--
T ss_pred ccccccccccCcceEEeeecCCeEECCCCCC-CccccccccCCCCeECCCCcCC
Confidence 4444444443367999999999999999987 44443333 03999999864
No 68
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=95.80 E-value=0.0021 Score=58.08 Aligned_cols=40 Identities=20% Similarity=0.694 Sum_probs=31.1
Q ss_pred ceEecCCCCCcccccccccCc-----CCCCCCCCCcccccccccc
Q 003406 417 TVVLCDACEKGFHLKCLQMNN-----QKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 417 ~MLlCDgCd~gYHl~CL~Ppp-----L~~VPeG~dWyCp~Cl~~~ 456 (823)
.|+.||.|+.|||..|..... |..+|+...|.|+.|....
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 489999999999999985421 2566766579999998653
No 69
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.46 E-value=0.0023 Score=54.79 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=28.0
Q ss_pred CCcccCcCcccccccccCCCCccccCCCcce
Q 003406 329 APQAVRDQSFRPFISQTGNMPNVHQPLQGTN 359 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~SNsCPiCRq~F~gI~ 359 (823)
-+|.+|..||.+|-+..++||+||+.|....
T Consensus 48 C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 48 CNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp TSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred CCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence 5899999999999999999999999987443
No 70
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.46 E-value=0.0059 Score=50.97 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=29.7
Q ss_pred CCcccCcCcccccccccCCCCccccCCCcceee
Q 003406 329 APQAVRDQSFRPFISQTGNMPNVHQPLQGTNIV 361 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~SNsCPiCRq~F~gI~~V 361 (823)
.+|.+|..||..|.+...+||+||+.|....+.
T Consensus 36 C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 36 CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred CCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 689999999999999999999999999876644
No 71
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=95.43 E-value=0.004 Score=48.57 Aligned_cols=28 Identities=4% Similarity=0.132 Sum_probs=26.0
Q ss_pred CCcccCcCcccccccccCCCCccccCCC
Q 003406 329 APQAVRDQSFRPFISQTGNMPNVHQPLQ 356 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~SNsCPiCRq~F~ 356 (823)
-+|.+|..||..|.+..++||+||+.+.
T Consensus 27 C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 27 CGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 6899999999999999999999999864
No 72
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=94.83 E-value=0.0059 Score=47.46 Aligned_cols=29 Identities=10% Similarity=0.258 Sum_probs=26.6
Q ss_pred CCcccCcCcccccccccCCCCccccCCCc
Q 003406 329 APQAVRDQSFRPFISQTGNMPNVHQPLQG 357 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~SNsCPiCRq~F~g 357 (823)
-+|.+|..||..|.+...+||+||+.|.+
T Consensus 27 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 27 CGHLLHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp TSCEEETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCCcccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 58999999999999999999999998764
No 73
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.81 E-value=0.0042 Score=51.35 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=28.5
Q ss_pred CCcccCcCcccccccccCCCCccccCCCcce
Q 003406 329 APQAVRDQSFRPFISQTGNMPNVHQPLQGTN 359 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~SNsCPiCRq~F~gI~ 359 (823)
.+|.+|..||..|.+..++||+||+.+..+.
T Consensus 36 C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 36 CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 5899999999999999999999999988665
No 74
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.57 E-value=0.0066 Score=50.52 Aligned_cols=28 Identities=4% Similarity=0.107 Sum_probs=26.3
Q ss_pred CCcccCcCcccccccccCCCCccccCCC
Q 003406 329 APQAVRDQSFRPFISQTGNMPNVHQPLQ 356 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~SNsCPiCRq~F~ 356 (823)
.+|.+|..||..|.+..++||+||+.+.
T Consensus 44 C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 44 CNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp TTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 5899999999999999999999999876
No 75
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=94.29 E-value=0.0068 Score=55.24 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=27.0
Q ss_pred CCCcccCcCcccccccccCCCCccccCCC
Q 003406 328 TAPQAVRDQSFRPFISQTGNMPNVHQPLQ 356 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~SNsCPiCRq~F~ 356 (823)
..+|.+|..||.+|-+..++||+||+.|.
T Consensus 72 ~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 72 VCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp TTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred ccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 35899999999999999999999999986
No 76
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.20 E-value=0.011 Score=51.20 Aligned_cols=30 Identities=7% Similarity=0.040 Sum_probs=26.2
Q ss_pred CcccCcCcccccccccC--CCCccccCCCcce
Q 003406 330 PQAVRDQSFRPFISQTG--NMPNVHQPLQGTN 359 (823)
Q Consensus 330 ~Q~~hd~CIrpWSk~SN--sCPiCRq~F~gI~ 359 (823)
.|++|..||..|-...+ +||+||+.|....
T Consensus 41 ~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 41 LHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp SCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 49999999999988875 9999999998444
No 77
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=94.17 E-value=0.0067 Score=49.50 Aligned_cols=29 Identities=3% Similarity=0.117 Sum_probs=26.9
Q ss_pred CCcccCcCcccccccccCCCCccccCCCc
Q 003406 329 APQAVRDQSFRPFISQTGNMPNVHQPLQG 357 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~SNsCPiCRq~F~g 357 (823)
-+|.+|..||..|.+..++||+||+.+..
T Consensus 35 C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 35 CMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 58999999999999999999999999874
No 78
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=94.02 E-value=0.0075 Score=49.11 Aligned_cols=32 Identities=9% Similarity=0.218 Sum_probs=28.8
Q ss_pred CCCcccCcCcccccccccCCCCccccCCCcce
Q 003406 328 TAPQAVRDQSFRPFISQTGNMPNVHQPLQGTN 359 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~SNsCPiCRq~F~gI~ 359 (823)
..+|.+|..||..|.+..++||+||+.+...+
T Consensus 34 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 34 ECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 45899999999999999999999999988555
No 79
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=93.96 E-value=0.0099 Score=55.38 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=0.0
Q ss_pred CCCcccCcCcccccccccCCCCccccCCC
Q 003406 328 TAPQAVRDQSFRPFISQTGNMPNVHQPLQ 356 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~SNsCPiCRq~F~ 356 (823)
..+|.+|..||.+|-+..++||+||+.|.
T Consensus 83 ~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 83 VCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp -----------------------------
T ss_pred CcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 45899999999999999999999999986
No 80
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=93.89 E-value=0.015 Score=51.93 Aligned_cols=31 Identities=6% Similarity=0.028 Sum_probs=26.6
Q ss_pred CCcccCcCcccccc-----cccCCCCccccCCCcce
Q 003406 329 APQAVRDQSFRPFI-----SQTGNMPNVHQPLQGTN 359 (823)
Q Consensus 329 ~~Q~~hd~CIrpWS-----k~SNsCPiCRq~F~gI~ 359 (823)
.+|.+|..||..|. ....+||+||..|....
T Consensus 61 C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 61 CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 58999999999999 44679999999998543
No 81
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=93.83 E-value=0.013 Score=47.42 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=28.5
Q ss_pred CCCcccCcCcccccccccCCCCccccCCCcce
Q 003406 328 TAPQAVRDQSFRPFISQTGNMPNVHQPLQGTN 359 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~SNsCPiCRq~F~gI~ 359 (823)
.-+|.+|..||..|.+...+||+||+.+..+.
T Consensus 23 ~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 54 (68)
T 1chc_A 23 PCLHAFCYVCITRWIRQNPTCPLCKVPVESVV 54 (68)
T ss_dssp TTTEEESTTHHHHHHHHSCSTTTTCCCCCCEE
T ss_pred CCCCeeHHHHHHHHHhCcCcCcCCChhhHhhh
Confidence 35899999999999999999999999998553
No 82
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=93.71 E-value=0.0097 Score=51.79 Aligned_cols=28 Identities=7% Similarity=0.188 Sum_probs=26.2
Q ss_pred CCcccCcCcccccccccCCCCccccCCC
Q 003406 329 APQAVRDQSFRPFISQTGNMPNVHQPLQ 356 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~SNsCPiCRq~F~ 356 (823)
.+|.+|..||..|.+..++||+||+.|.
T Consensus 61 C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 61 CHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp TTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 5899999999999999999999999875
No 83
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.61 E-value=0.01 Score=47.82 Aligned_cols=29 Identities=10% Similarity=0.252 Sum_probs=26.6
Q ss_pred CCCcccCcCcccccccccCCCCccccCCC
Q 003406 328 TAPQAVRDQSFRPFISQTGNMPNVHQPLQ 356 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~SNsCPiCRq~F~ 356 (823)
.-+|.+|..||..|.+...+||+||+.|.
T Consensus 39 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 39 ECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp SSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 45899999999999999999999999876
No 84
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=93.57 E-value=0.011 Score=46.82 Aligned_cols=33 Identities=9% Similarity=0.205 Sum_probs=29.1
Q ss_pred CCCcccCcCcccccccccCCCCccccCCCccee
Q 003406 328 TAPQAVRDQSFRPFISQTGNMPNVHQPLQGTNI 360 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~SNsCPiCRq~F~gI~~ 360 (823)
.-+|.+|..||..|.+...+||+||+.+...++
T Consensus 27 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 27 ECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp TTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 358999999999999999999999999886553
No 85
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.03 E-value=0.012 Score=48.52 Aligned_cols=34 Identities=3% Similarity=-0.164 Sum_probs=29.6
Q ss_pred CCCcccCcCcccccccccCCCCccccCCCcceee
Q 003406 328 TAPQAVRDQSFRPFISQTGNMPNVHQPLQGTNIV 361 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~SNsCPiCRq~F~gI~~V 361 (823)
.-+|.+|..||..|......||+||+.+....++
T Consensus 32 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 32 PCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLD 65 (71)
T ss_dssp TTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHS
T ss_pred cCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhcc
Confidence 3689999999999999999999999999865544
No 86
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.98 E-value=0.032 Score=46.07 Aligned_cols=34 Identities=6% Similarity=0.057 Sum_probs=29.5
Q ss_pred CCCcccCcCcccccccccCCCCccccCCCcceee
Q 003406 328 TAPQAVRDQSFRPFISQTGNMPNVHQPLQGTNIV 361 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~SNsCPiCRq~F~gI~~V 361 (823)
.-+|.++..||..|.+....||+||+.+...+.+
T Consensus 33 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 33 ECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp SSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred CCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 4689999999999999889999999998865533
No 87
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.67 E-value=0.019 Score=46.87 Aligned_cols=32 Identities=13% Similarity=0.278 Sum_probs=28.7
Q ss_pred CCCcccCcCcccccccccCCCCccccCCCcce
Q 003406 328 TAPQAVRDQSFRPFISQTGNMPNVHQPLQGTN 359 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~SNsCPiCRq~F~gI~ 359 (823)
.-+|.+|..||..|.....+||+||+.+...+
T Consensus 31 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 31 PCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp TTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 35899999999999999999999999988655
No 88
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=91.33 E-value=0.037 Score=51.47 Aligned_cols=31 Identities=3% Similarity=0.169 Sum_probs=27.9
Q ss_pred CCCcccCcCcccccccccCCCCccccCCCcc
Q 003406 328 TAPQAVRDQSFRPFISQTGNMPNVHQPLQGT 358 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~SNsCPiCRq~F~gI 358 (823)
..+|.+|..||..|....++||+||+.+...
T Consensus 70 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 70 NCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp TTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred CCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 3689999999999999999999999998744
No 89
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=90.70 E-value=0.061 Score=47.49 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=29.2
Q ss_pred CCCcccCcCccccccccc-CCCCccccCCCcceee
Q 003406 328 TAPQAVRDQSFRPFISQT-GNMPNVHQPLQGTNIV 361 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~S-NsCPiCRq~F~gI~~V 361 (823)
..+|.++..||..|-+.. ..||+||+.|..-.++
T Consensus 40 ~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 40 HCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV 74 (100)
T ss_dssp TTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred CCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhH
Confidence 468999999999999888 6999999999765544
No 90
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=90.51 E-value=0.07 Score=46.55 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=28.0
Q ss_pred CCCcccCcCcccccccccCCCCccccCCCcc
Q 003406 328 TAPQAVRDQSFRPFISQTGNMPNVHQPLQGT 358 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~SNsCPiCRq~F~gI 358 (823)
..+|.++..||..|......||+||+.+..-
T Consensus 40 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 40 QCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 4689999999999999889999999998853
No 91
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=90.16 E-value=0.065 Score=44.65 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=26.6
Q ss_pred CCcccCcCccccccccc--CCCCccccCCCcce
Q 003406 329 APQAVRDQSFRPFISQT--GNMPNVHQPLQGTN 359 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~S--NsCPiCRq~F~gI~ 359 (823)
-+|.++..||..|.+.. ..||+||++|...+
T Consensus 34 CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 34 CGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp SCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 58999999999999866 69999999876544
No 92
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=89.81 E-value=0.11 Score=47.28 Aligned_cols=48 Identities=8% Similarity=0.090 Sum_probs=35.3
Q ss_pred CCCcccCcCccccccccc-CCCCccccCCCcceeecCCCCCCCchhhhHHHHHhc
Q 003406 328 TAPQAVRDQSFRPFISQT-GNMPNVHQPLQGTNIVQAPQFGSNHGEIAKIVQKLL 381 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~S-NsCPiCRq~F~gI~~Vq~P~~~s~hkeIaKiVqkll 381 (823)
..+|.++..||..|-... ..||+||+.|.... ....+..+..++.+++
T Consensus 69 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~------~~~~n~~l~~~i~~~~ 117 (124)
T 3fl2_A 69 VCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSY------AMQVNQPLQTVLNQLF 117 (124)
T ss_dssp TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTC------CCCCCHHHHHHHHHHS
T ss_pred eCCCcccHHHHHHHHhHCcCCCCCCCccCCCCC------CCCCCHHHHHHHHHHc
Confidence 568999999999998754 49999999987522 1223456677777665
No 93
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.35 E-value=0.057 Score=45.47 Aligned_cols=29 Identities=10% Similarity=-0.022 Sum_probs=26.9
Q ss_pred CCCcccCcCcccccccccCCCCccccCCC
Q 003406 328 TAPQAVRDQSFRPFISQTGNMPNVHQPLQ 356 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~SNsCPiCRq~F~ 356 (823)
..+|.++..||..|.+....||+||+.+.
T Consensus 32 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 32 KCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp TTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 46899999999999999999999999987
No 94
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=89.32 E-value=0.086 Score=43.82 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=27.6
Q ss_pred CCCcccCcCcccccccc-cCCCCccccCCCcce
Q 003406 328 TAPQAVRDQSFRPFISQ-TGNMPNVHQPLQGTN 359 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~-SNsCPiCRq~F~gI~ 359 (823)
..+|.++..||..|-.. ..+||+||+.+..-.
T Consensus 25 ~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 25 STGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred CCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 36899999999999987 789999999987544
No 95
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.87 E-value=0.09 Score=45.40 Aligned_cols=29 Identities=7% Similarity=0.089 Sum_probs=26.2
Q ss_pred CCCcccCcCccccccccc--CCCCccccCCC
Q 003406 328 TAPQAVRDQSFRPFISQT--GNMPNVHQPLQ 356 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~S--NsCPiCRq~F~ 356 (823)
..+|.+|..||..|-+.. ++||+||+.|.
T Consensus 33 ~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 33 TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 468999999999998877 89999999987
No 96
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=88.86 E-value=0.07 Score=47.75 Aligned_cols=32 Identities=9% Similarity=0.212 Sum_probs=28.8
Q ss_pred CCcccCcCcccccccccCCCCccccCCCccee
Q 003406 329 APQAVRDQSFRPFISQTGNMPNVHQPLQGTNI 360 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~SNsCPiCRq~F~gI~~ 360 (823)
-+|.+|..||.+|-+..++||+||+.+..-++
T Consensus 97 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 97 CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred CCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 58999999999999999999999999886553
No 97
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=88.54 E-value=0.16 Score=44.67 Aligned_cols=34 Identities=6% Similarity=0.111 Sum_probs=28.2
Q ss_pred CCCcccCcCcccccccccC---CCCccccCCCcceee
Q 003406 328 TAPQAVRDQSFRPFISQTG---NMPNVHQPLQGTNIV 361 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~SN---sCPiCRq~F~gI~~V 361 (823)
..+|.++..||..|....+ .||+||+.+..-.+.
T Consensus 38 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 38 KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence 4689999999999988654 899999998865533
No 98
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=88.17 E-value=0.15 Score=45.26 Aligned_cols=31 Identities=6% Similarity=0.121 Sum_probs=28.1
Q ss_pred CCCcccCcCcccccccccCCCCccccCCCcc
Q 003406 328 TAPQAVRDQSFRPFISQTGNMPNVHQPLQGT 358 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~SNsCPiCRq~F~gI 358 (823)
..+|.++..||..|......||+||+.+...
T Consensus 33 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 33 ECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp TTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4689999999999999889999999998854
No 99
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=87.96 E-value=0.11 Score=41.86 Aligned_cols=33 Identities=18% Similarity=0.407 Sum_probs=27.1
Q ss_pred CCCcccCcCccccc-ccccCCCCccccCCCccee
Q 003406 328 TAPQAVRDQSFRPF-ISQTGNMPNVHQPLQGTNI 360 (823)
Q Consensus 328 a~~Q~~hd~CIrpW-Sk~SNsCPiCRq~F~gI~~ 360 (823)
.-+|.++..||..| .+....||+||+.+..-++
T Consensus 25 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 25 VCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 46899999999999 5555789999999886553
No 100
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=87.91 E-value=0.14 Score=43.79 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=24.3
Q ss_pred CCcccCcCccccccccc--CCCCccccCCC
Q 003406 329 APQAVRDQSFRPFISQT--GNMPNVHQPLQ 356 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~S--NsCPiCRq~F~ 356 (823)
.+|.++..||..|.... ..||+||+.|.
T Consensus 32 CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 32 CGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 68999999999997654 59999999984
No 101
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.77 E-value=0.13 Score=41.68 Aligned_cols=31 Identities=3% Similarity=0.130 Sum_probs=26.0
Q ss_pred CCCcccCcCccccccc-ccCCCCccccCCCcc
Q 003406 328 TAPQAVRDQSFRPFIS-QTGNMPNVHQPLQGT 358 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk-~SNsCPiCRq~F~gI 358 (823)
.-+|.++..||..|.+ ....||+||+.+..-
T Consensus 32 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 32 ECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp SSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 4689999999999994 457899999998743
No 102
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=87.52 E-value=0.42 Score=47.72 Aligned_cols=48 Identities=19% Similarity=0.318 Sum_probs=30.7
Q ss_pred ccccCCCCCCceEecCCCCCcccccccccCcCCCCCCC--CCcccccccc
Q 003406 407 ICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRG--GEWHCMSCLK 454 (823)
Q Consensus 407 VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG--~dWyCp~Cl~ 454 (823)
-|+...+-.-.||.|+.|.+|||..|+....-.-+|-. ....|..|..
T Consensus 9 YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 9 DEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHH 58 (177)
T ss_dssp --CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTST
T ss_pred EcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCC
Confidence 46654333378999999999999999975221224421 1355999964
No 103
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=87.10 E-value=0.23 Score=41.02 Aligned_cols=31 Identities=3% Similarity=-0.067 Sum_probs=26.8
Q ss_pred CCCcccCcCcccccccc-------cCCCCccccCCCcc
Q 003406 328 TAPQAVRDQSFRPFISQ-------TGNMPNVHQPLQGT 358 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~-------SNsCPiCRq~F~gI 358 (823)
..+|.++..||..|.+. ...||+||+.+..-
T Consensus 29 ~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 29 DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 36899999999999887 67999999998743
No 104
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.74 E-value=0.27 Score=40.78 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=27.5
Q ss_pred CCCcccCcCcccccccc------cCCCCccccCCCcce
Q 003406 328 TAPQAVRDQSFRPFISQ------TGNMPNVHQPLQGTN 359 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~------SNsCPiCRq~F~gI~ 359 (823)
..+|.++..||..|... ...||.||+.+..-.
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 36 DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 46899999999999877 789999999988543
No 105
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.05 E-value=0.1 Score=43.93 Aligned_cols=30 Identities=7% Similarity=0.093 Sum_probs=26.1
Q ss_pred CCCcccCcCccccccccc---CCCCccccCCCc
Q 003406 328 TAPQAVRDQSFRPFISQT---GNMPNVHQPLQG 357 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~S---NsCPiCRq~F~g 357 (823)
..+|.++..||..|.+.. ..||+||+.+..
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 36 HCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 358999999999998875 899999998763
No 106
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.03 E-value=0.16 Score=41.40 Aligned_cols=30 Identities=3% Similarity=-0.087 Sum_probs=25.6
Q ss_pred CCCcccCcCccccccc---ccCCCCccccCCCc
Q 003406 328 TAPQAVRDQSFRPFIS---QTGNMPNVHQPLQG 357 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk---~SNsCPiCRq~F~g 357 (823)
.-+|.++..||..|.+ ....||+||+.+..
T Consensus 37 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 37 DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4689999999999986 44689999999874
No 107
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=85.11 E-value=0.18 Score=47.91 Aligned_cols=32 Identities=6% Similarity=0.094 Sum_probs=27.5
Q ss_pred CCCcccCcCcccccccc-cCCCCccccCCCcce
Q 003406 328 TAPQAVRDQSFRPFISQ-TGNMPNVHQPLQGTN 359 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~-SNsCPiCRq~F~gI~ 359 (823)
..+|.+|..||..|-.. ...||+||..+....
T Consensus 72 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 104 (165)
T 2ckl_B 72 ECLHRFCADCIITALRSGNKECPTCRKKLVSKR 104 (165)
T ss_dssp TTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGG
T ss_pred CCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcc
Confidence 46899999999999887 688999999986543
No 108
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=84.53 E-value=0.31 Score=46.37 Aligned_cols=48 Identities=6% Similarity=0.070 Sum_probs=35.6
Q ss_pred CCCcccCcCcccccccccC-CCCccccCCCcceeecCCCCCCCchhhhHHHHHhc
Q 003406 328 TAPQAVRDQSFRPFISQTG-NMPNVHQPLQGTNIVQAPQFGSNHGEIAKIVQKLL 381 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~SN-sCPiCRq~F~gI~~Vq~P~~~s~hkeIaKiVqkll 381 (823)
..+|.++..||..|....+ .||+||+.+.... ....+..+..++..+.
T Consensus 95 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~------~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 95 ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNY------IMIPNEILQTLLDLFF 143 (150)
T ss_dssp TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTC------CCCBCHHHHHHHHHHS
T ss_pred CCCCchhHHHHHHHHHhCCCcCCCCCccCCCCC------CCCCCHHHHHHHHHHh
Confidence 4689999999999998765 8999999988542 1234455666776654
No 109
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=84.52 E-value=0.26 Score=40.80 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=26.9
Q ss_pred CCcccCcCcccccccc------cCCCCccccCCCcce
Q 003406 329 APQAVRDQSFRPFISQ------TGNMPNVHQPLQGTN 359 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~------SNsCPiCRq~F~gI~ 359 (823)
.+|.++..||..|... ...||+||+.+..-.
T Consensus 37 CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 37 CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 6899999999999887 679999999987443
No 110
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=84.20 E-value=0.26 Score=44.11 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=28.3
Q ss_pred CCCcccCcCcccccccc-cCCCCccccCCCccee
Q 003406 328 TAPQAVRDQSFRPFISQ-TGNMPNVHQPLQGTNI 360 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~-SNsCPiCRq~F~gI~~ 360 (823)
.-+|.++..||..|.+. ...||+||+.+....+
T Consensus 40 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 40 SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 36899999999999987 5799999999886553
No 111
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=83.72 E-value=0.81 Score=41.18 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=24.7
Q ss_pred CCCcccCcCcccccccccCCCCccccCCC
Q 003406 328 TAPQAVRDQSFRPFISQTGNMPNVHQPLQ 356 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~SNsCPiCRq~F~ 356 (823)
..+|.++..||..|.. ..||+||+.+.
T Consensus 40 ~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 40 GCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp SSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 4689999999999988 88999999985
No 112
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.26 E-value=0.34 Score=40.07 Aligned_cols=48 Identities=21% Similarity=0.458 Sum_probs=33.3
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
+...|.||...... ...+..-.|...||..|+... +.. ...||.|...
T Consensus 22 ~~~~C~IC~~~~~~-~~~~~~l~C~H~fh~~Ci~~w-~~~-----~~~CP~Cr~~ 69 (75)
T 1x4j_A 22 EQTLCVVCMCDFES-RQLLRVLPCNHEFHAKCVDKW-LKA-----NRTCPICRAD 69 (75)
T ss_dssp SCCEETTTTEECCB-TCEEEEETTTEEEETTHHHHH-HHH-----CSSCTTTCCC
T ss_pred CCCCCeECCcccCC-CCeEEEECCCCHhHHHHHHHH-HHc-----CCcCcCcCCc
Confidence 45679999976555 444444469999999999752 321 2479999854
No 113
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=82.80 E-value=0.24 Score=44.78 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=28.0
Q ss_pred CCCcccCcCcccccccccC-CCCccccCCCcce
Q 003406 328 TAPQAVRDQSFRPFISQTG-NMPNVHQPLQGTN 359 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~SN-sCPiCRq~F~gI~ 359 (823)
..+|.++..||..|.+..+ .||+||+.+....
T Consensus 35 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 35 PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 3689999999999998886 9999999988654
No 114
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=81.92 E-value=0.29 Score=43.68 Aligned_cols=30 Identities=7% Similarity=0.174 Sum_probs=26.5
Q ss_pred CCCcccCcCcccccccc-cCCCCccccCCCc
Q 003406 328 TAPQAVRDQSFRPFISQ-TGNMPNVHQPLQG 357 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~-SNsCPiCRq~F~g 357 (823)
..+|.++..||..|... ...||+||+.+..
T Consensus 32 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 32 PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 47899999999999876 5799999999874
No 115
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=81.82 E-value=0.94 Score=34.89 Aligned_cols=49 Identities=22% Similarity=0.522 Sum_probs=34.1
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
+...|.||.......+.......|...||..|+... +.. ...||.|...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w-~~~-----~~~CP~Cr~~ 52 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMW-LGS-----HSTCPLCRLT 52 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHT-TTT-----CCSCSSSCCC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHH-HHc-----CCcCcCCCCE
Confidence 345699999765543444555579999999999762 332 4679999853
No 116
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=81.80 E-value=0.45 Score=46.81 Aligned_cols=47 Identities=26% Similarity=0.725 Sum_probs=37.4
Q ss_pred cccccccccCCCCCCceEecC--CCCCcccccccccCcC-----CC-CCCCCCcccccccc
Q 003406 402 AFTCQICKLTANEVETVVLCD--ACEKGFHLKCLQMNNQ-----KG-IPRGGEWHCMSCLK 454 (823)
Q Consensus 402 ~~~C~VC~~g~~e~~~MLlCD--gCd~gYHl~CL~PppL-----~~-VPeG~dWyCp~Cl~ 454 (823)
+.+|.+|..+ +.+++|| .|.+.|=..|+.- .+ .+ +... .|.|-.|..
T Consensus 79 ~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~-nvG~~~~~~i~~~d-~W~Cy~C~P 133 (159)
T 3a1b_A 79 QSYCTICCGG----REVLMCGNNNCCRCFCVECVDL-LVGPGAAQAAIKED-PWNCYMCGH 133 (159)
T ss_dssp BSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHH-HTCTTHHHHHHTSS-SCCCTTTCS
T ss_pred cceeeEecCC----CeEEeeCCCCCCCchhHHHHHH-hcCHhHHHHHhccC-CCEEEecCC
Confidence 4689999987 7999999 8999999999864 22 22 3344 799999985
No 117
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.55 E-value=1.2 Score=38.54 Aligned_cols=52 Identities=21% Similarity=0.385 Sum_probs=33.3
Q ss_pred ccccccccccCCCCCCceEe---cCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVL---CDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLl---CDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+...|.||.....+.+.+++ |.|+-..||..||... |.. .+ ...||.|....
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~W-l~~--~~-~~~CplCr~~~ 68 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQW-IKS--SD-TRCCELCKYEF 68 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHH-HHH--HC-CSBCSSSCCBC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHH-Hhh--CC-CCCCCCCCCee
Confidence 34679999976554345543 2334589999999763 221 12 35899998654
No 118
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=80.99 E-value=0.28 Score=40.37 Aligned_cols=26 Identities=4% Similarity=0.060 Sum_probs=22.7
Q ss_pred cccCcCcccccccc--cCCCCccccCCC
Q 003406 331 QAVRDQSFRPFISQ--TGNMPNVHQPLQ 356 (823)
Q Consensus 331 Q~~hd~CIrpWSk~--SNsCPiCRq~F~ 356 (823)
+++|..||..|-.. ..+||+|+..|.
T Consensus 31 ~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 31 ENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp GSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred hhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 48999999999765 478999999986
No 119
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.29 E-value=0.44 Score=40.55 Aligned_cols=32 Identities=28% Similarity=0.573 Sum_probs=22.1
Q ss_pred eEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 418 VVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 418 MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
.+.--.|...||..|+... |.. .-.||.|+..
T Consensus 42 ~~~~~~C~H~FH~~Ci~~W-l~~-----~~~CP~CR~~ 73 (81)
T 2ecl_A 42 VVVWGECNHSFHNCCMSLW-VKQ-----NNRCPLCQQD 73 (81)
T ss_dssp CEEEETTSCEEEHHHHHHH-TTT-----CCBCTTTCCB
T ss_pred EEEeCCCCCccChHHHHHH-HHh-----CCCCCCcCCC
Confidence 3333479999999999762 332 2379999864
No 120
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=79.50 E-value=0.82 Score=42.10 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=33.3
Q ss_pred cccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccc
Q 003406 402 AFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHC 449 (823)
Q Consensus 402 ~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyC 449 (823)
.-.|.+|++.. .+.|..|+.+||..|+.. .|..-+.. -|+|
T Consensus 58 ~c~C~~C~k~~-----~~~C~~Cp~sfC~~c~~g-~l~~~~~~-~~~c 98 (107)
T 4gne_A 58 WHQCDECSSAA-----VSFCEFCPHSFCKDHEKG-ALVPSALE-GRLC 98 (107)
T ss_dssp GGBCTTTCSBC-----CEECSSSSCEECTTTCTT-SCEECTTT-TCEE
T ss_pred CCCCCcCCCCC-----CcCcCCCCcchhhhccCC-cceecCCC-Ccee
Confidence 34688998763 278999999999999998 67766666 6998
No 121
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=78.59 E-value=0.49 Score=52.18 Aligned_cols=35 Identities=9% Similarity=0.186 Sum_probs=30.3
Q ss_pred cCCCcccCcCccccccc-ccCCCCccccCCCcceee
Q 003406 327 RTAPQAVRDQSFRPFIS-QTGNMPNVHQPLQGTNIV 361 (823)
Q Consensus 327 Ra~~Q~~hd~CIrpWSk-~SNsCPiCRq~F~gI~~V 361 (823)
-..+|.+|..||..|.. ...+||+||+.+.....+
T Consensus 348 lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 348 EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp ETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred eCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 44689999999999988 679999999999977655
No 122
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=78.33 E-value=0.38 Score=53.09 Aligned_cols=50 Identities=24% Similarity=0.644 Sum_probs=37.9
Q ss_pred ccccccccccCCCCCCceEecC--CCCCcccccccccCcC-----CCCCCCCCccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCD--ACEKGFHLKCLQMNNQ-----KGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCD--gCd~gYHl~CL~PppL-----~~VPeG~dWyCp~Cl~~ 455 (823)
.+.+|.+|..+ +.+++|| .|.+.|-..|+.- .+ .++-....|.|-.|...
T Consensus 92 ~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~-n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSG----ETLLICGNPDCTRCYCFECVDS-LVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHH-HTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCC----CeEEEeCCCCCCcchHHHHHHH-hcChhHHHHhhccCCceEEEcCCc
Confidence 34689999987 7899999 9999999999864 23 22222227999999853
No 123
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=77.98 E-value=0.63 Score=41.46 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=34.8
Q ss_pred CcCCCcccCcCcccccccccCCCCccccCCCcceeecCCCCCCCchhhhHHHHHh
Q 003406 326 SRTAPQAVRDQSFRPFISQTGNMPNVHQPLQGTNIVQAPQFGSNHGEIAKIVQKL 380 (823)
Q Consensus 326 tRa~~Q~~hd~CIrpWSk~SNsCPiCRq~F~gI~~Vq~P~~~s~hkeIaKiVqkl 380 (823)
+..++|.|.-.||..|-....+||.||++|..-.++ .+..+++.++.+
T Consensus 38 ~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~-------pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 38 LPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIR-------PNTELKEKIQRW 85 (98)
T ss_dssp CTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSE-------ECHHHHHHHHHH
T ss_pred CCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhce-------EcHHHHHHHHHH
Confidence 333449999999999988788999999998854433 234566666544
No 124
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=75.36 E-value=0.67 Score=39.99 Aligned_cols=33 Identities=9% Similarity=0.025 Sum_probs=28.2
Q ss_pred CCcccCcCcccccccccCCCCccccCCCcceee
Q 003406 329 APQAVRDQSFRPFISQTGNMPNVHQPLQGTNIV 361 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~SNsCPiCRq~F~gI~~V 361 (823)
.||.|.-.||..|-....+||.||++|..-.++
T Consensus 32 cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~ 64 (85)
T 2kr4_A 32 SGTVMDRSIILRHLLNSPTDPFNRQMLTESMLE 64 (85)
T ss_dssp TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCE
T ss_pred CCCEECHHHHHHHHhcCCCCCCCcCCCChHhcc
Confidence 589999999999988789999999999855433
No 125
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=74.05 E-value=2.8 Score=34.60 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=33.0
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
....|.||...... ...+.--.|...||..|+.. -+. . ...||.|....
T Consensus 14 ~~~~C~IC~~~~~~-~~~~~~~~C~H~fc~~Ci~~-~~~----~-~~~CP~Cr~~~ 62 (78)
T 2ect_A 14 SGLECPVCKEDYAL-GESVRQLPCNHLFHDSCIVP-WLE----Q-HDSCPVCRKSL 62 (78)
T ss_dssp SSCCCTTTTSCCCT-TSCEEECTTSCEEETTTTHH-HHT----T-TCSCTTTCCCC
T ss_pred CCCCCeeCCccccC-CCCEEEeCCCCeecHHHHHH-HHH----c-CCcCcCcCCcc
Confidence 45679999876554 22222235899999999975 232 2 35799998654
No 126
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=73.66 E-value=1.7 Score=33.33 Aligned_cols=48 Identities=21% Similarity=0.391 Sum_probs=32.7
Q ss_pred cccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 402 AFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 402 ~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
...|.||.....+.+..+..-.|...||..|+.. -+.. ...||.|...
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~-~~~~-----~~~CP~Cr~~ 52 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEE-MLKE-----GYRCPLCSGP 52 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHH-HHHH-----TCCCTTSCCS
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHH-HHHc-----CCcCCCCCCc
Confidence 3569999976533244556667999999999965 1211 2469999854
No 127
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.08 E-value=1.6 Score=37.59 Aligned_cols=52 Identities=23% Similarity=0.481 Sum_probs=36.9
Q ss_pred ccccccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 397 EYMSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 397 ey~~~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
.|......|.||...... -+.|..|...||..|+... |+... .=.||.|...
T Consensus 10 ~y~~~i~~C~IC~~~i~~---g~~C~~C~h~fH~~Ci~kW-l~~~~---~~~CP~Cr~~ 61 (74)
T 2ct0_A 10 TYPDAVKICNICHSLLIQ---GQSCETCGIRMHLPCVAKY-FQSNA---EPRCPHCNDY 61 (74)
T ss_dssp CCSSSSCBCSSSCCBCSS---SEECSSSCCEECHHHHHHH-STTCS---SCCCTTTCSC
T ss_pred hccCCCCcCcchhhHccc---CCccCCCCchhhHHHHHHH-HHhcC---CCCCCCCcCc
Confidence 444455779999976543 2578899999999999763 54332 2469999854
No 128
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=72.09 E-value=1 Score=40.27 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=34.0
Q ss_pred CCcccCcCcccccccccCCCCccccCCCcceeecCCCCCCCchhhhHHHHHh
Q 003406 329 APQAVRDQSFRPFISQTGNMPNVHQPLQGTNIVQAPQFGSNHGEIAKIVQKL 380 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~SNsCPiCRq~F~gI~~Vq~P~~~s~hkeIaKiVqkl 380 (823)
.||.|.-.||..|-....+||.||++|..-.++ .+..+++.++..
T Consensus 47 cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~-------pn~~Lk~~I~~~ 91 (100)
T 2kre_A 47 SGTIMDRSIILRHLLNSPTDPFNRQTLTESMLE-------PVPELKEQIQAW 91 (100)
T ss_dssp TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSE-------ECHHHHHHHHHH
T ss_pred CCCEEchHHHHHHHHcCCCCCCCCCCCChhhce-------ECHHHHHHHHHH
Confidence 589999999999988789999999998854433 234556666544
No 129
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=71.30 E-value=1.1 Score=37.55 Aligned_cols=28 Identities=7% Similarity=-0.017 Sum_probs=24.4
Q ss_pred CCCcc-cCcCcccccccccCCCCccccCCCcce
Q 003406 328 TAPQA-VRDQSFRPFISQTGNMPNVHQPLQGTN 359 (823)
Q Consensus 328 a~~Q~-~hd~CIrpWSk~SNsCPiCRq~F~gI~ 359 (823)
..+|. ++..|+..| ..||+||+.|....
T Consensus 41 pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 69 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAV----DKCPMCYTVITFKQ 69 (74)
T ss_dssp TTCCBCCCHHHHTTC----SBCTTTCCBCSEEE
T ss_pred CCCChhHHHHhhhcC----ccCCCcCcCccCcE
Confidence 45899 999999999 88999999998653
No 130
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=70.71 E-value=0.79 Score=37.53 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=27.1
Q ss_pred CCCcc-cCcCcccccccccCCCCccccCCCcce
Q 003406 328 TAPQA-VRDQSFRPFISQTGNMPNVHQPLQGTN 359 (823)
Q Consensus 328 a~~Q~-~hd~CIrpWSk~SNsCPiCRq~F~gI~ 359 (823)
.-+|. +...|+..|.+....||+||+.+..+.
T Consensus 27 pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i 59 (64)
T 2vje_A 27 KTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIV 59 (64)
T ss_dssp TEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEE
T ss_pred CCCChhhHHHHHHHHHHcCCcCCCcCcchhceE
Confidence 35788 688999999998899999999987543
No 131
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.18 E-value=3.4 Score=36.89 Aligned_cols=35 Identities=29% Similarity=0.807 Sum_probs=27.9
Q ss_pred CceEecCCCCC-cccccccccCcCCCCCCCCCccccccccc
Q 003406 416 ETVVLCDACEK-GFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 416 ~~MLlCDgCd~-gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
-.||+|..|.. +-|..|. .|+..+. .|.|..|...
T Consensus 44 W~L~lC~~Cgs~gtH~~Cs---~l~~~~~--~weC~~C~~v 79 (85)
T 1weq_A 44 WRLILCATCGSHGTHRDCS---SLRPNSK--KWECNECLPA 79 (85)
T ss_dssp TBCEECSSSCCCEECSGGG---TCCTTCS--CCCCTTTSCC
T ss_pred EEEEeCcccCCchhHHHHh---CCcCCCC--CEECCcCccc
Confidence 47999999994 8899999 4554444 6999999854
No 132
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.12 E-value=1 Score=34.85 Aligned_cols=24 Identities=4% Similarity=0.063 Sum_probs=20.4
Q ss_pred CCCcccCcCccccc---ccccCCCCcc
Q 003406 328 TAPQAVRDQSFRPF---ISQTGNMPNV 351 (823)
Q Consensus 328 a~~Q~~hd~CIrpW---Sk~SNsCPiC 351 (823)
.-+|.++..||..| .+....||+|
T Consensus 32 ~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 32 ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 36899999999999 5566899987
No 133
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=68.82 E-value=1.2 Score=39.41 Aligned_cols=52 Identities=27% Similarity=0.424 Sum_probs=32.3
Q ss_pred ccccccccCCCCC--------------CceEecCCCCCcccccccccCcCCCC-CCCCCcccccccccc
Q 003406 403 FTCQICKLTANEV--------------ETVVLCDACEKGFHLKCLQMNNQKGI-PRGGEWHCMSCLKLS 456 (823)
Q Consensus 403 ~~C~VC~~g~~e~--------------~~MLlCDgCd~gYHl~CL~PppL~~V-PeG~dWyCp~Cl~~~ 456 (823)
..|.||....... ...+..-.|...||..||... |..- ... .-.||.|+...
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w-l~~~~~~~-~~~CP~CR~~~ 92 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAM-YCNGNKDG-SLQCPSCKTIY 92 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHH-HHHTCCSS-CCBCTTTCCBS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHH-HHcccCCC-CCcCCCCCCcc
Confidence 4699998654221 123334579999999999762 3211 122 45799998653
No 134
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=67.77 E-value=2 Score=34.68 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=32.7
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
....|.||...... +..+..-.|...||..|+... +.. ...||.|....
T Consensus 13 ~~~~C~IC~~~~~~-~~~~~~~~C~H~fc~~Ci~~~-~~~-----~~~CP~Cr~~~ 61 (69)
T 2kiz_A 13 TEEKCTICLSILEE-GEDVRRLPCMHLFHQVCVDQW-LIT-----NKKCPICRVDI 61 (69)
T ss_dssp CCCSBTTTTBCCCS-SSCEEECTTSCEEEHHHHHHH-HHH-----CSBCTTTCSBS
T ss_pred CCCCCeeCCccccC-CCcEEEeCCCCHHHHHHHHHH-HHc-----CCCCcCcCccc
Confidence 44679999876543 233444469999999999652 221 24699998653
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=67.59 E-value=1.8 Score=43.26 Aligned_cols=46 Identities=9% Similarity=0.285 Sum_probs=33.9
Q ss_pred CCcccCcCcccccccccC-CCCccccCCCcceeecCCCCCCCchhhhHHHHHhc
Q 003406 329 APQAVRDQSFRPFISQTG-NMPNVHQPLQGTNIVQAPQFGSNHGEIAKIVQKLL 381 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~SN-sCPiCRq~F~gI~~Vq~P~~~s~hkeIaKiVqkll 381 (823)
.||.++-.||..|-...+ +||.||+++..-.++ .+..+++.+..+.
T Consensus 226 ~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~-------~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 226 SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI-------PNLAMKEVIDAFI 272 (281)
T ss_dssp SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCE-------ECHHHHHHHHHHH
T ss_pred CCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCc-------ccHHHHHHHHHHH
Confidence 589999999999987644 499999999754433 3445667776554
No 136
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=67.28 E-value=0.91 Score=37.03 Aligned_cols=32 Identities=9% Similarity=-0.010 Sum_probs=27.0
Q ss_pred CCCcc-cCcCcccccccccCCCCccccCCCcce
Q 003406 328 TAPQA-VRDQSFRPFISQTGNMPNVHQPLQGTN 359 (823)
Q Consensus 328 a~~Q~-~hd~CIrpWSk~SNsCPiCRq~F~gI~ 359 (823)
.-+|. +...|+..|.+....||+||+.+..+.
T Consensus 26 pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i 58 (63)
T 2vje_B 26 RTGHLVTCFHCARRLKKAGASCPICKKEIQLVI 58 (63)
T ss_dssp TEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEE
T ss_pred CCCCHhHHHHHHHHHHHhCCcCCCcCchhhceE
Confidence 35787 899999999988889999999987554
No 137
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=65.90 E-value=2.8 Score=33.12 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=21.8
Q ss_pred CCcccCcCcccccccccCCCCccccCCC
Q 003406 329 APQAVRDQSFRPFISQTGNMPNVHQPLQ 356 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~SNsCPiCRq~F~ 356 (823)
-+|.++..||..| ...||+||+.+.
T Consensus 24 CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 24 CLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp TSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred CCCcccHHHHccC---CCCCCcCCcEee
Confidence 5899999999885 468999999976
No 138
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.15 E-value=2.5 Score=34.52 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=32.5
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
....|.||.........+... .|...||..|+... +.. ...||.|....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~-~~~-----~~~CP~Cr~~~ 62 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKW-LEV-----RKVCPLCNMPV 62 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHH-HHH-----CSBCTTTCCBC
T ss_pred CCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHH-HHc-----CCcCCCcCccc
Confidence 446799999875542333333 59999999999652 221 23799998653
No 139
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=62.07 E-value=2 Score=34.58 Aligned_cols=52 Identities=25% Similarity=0.482 Sum_probs=34.0
Q ss_pred ccccccccccCCCC---CCceEecCCCCCcccccccccCcCCCCCCCCCccccccccccCC
Q 003406 401 KAFTCQICKLTANE---VETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNG 458 (823)
Q Consensus 401 ~~~~C~VC~~g~~e---~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~~g 458 (823)
+...|.||.....+ .+..+..-.|+..||..|+.. -+.. .-.||.|......
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~-~~~~-----~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD-SLKN-----ANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHH-HHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHH-HHHc-----CCCCCCCCCccCh
Confidence 34569999965332 134455668999999999965 1221 2379999876533
No 140
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=60.86 E-value=2.6 Score=38.09 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=29.4
Q ss_pred ccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccccC
Q 003406 403 FTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSN 457 (823)
Q Consensus 403 ~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~~ 457 (823)
.+|.+|++. + |+.|+..||++|+.++ -|.|..|.....
T Consensus 8 ~~C~~C~~~----~----C~~C~~c~~~~~~~~~---------~~~~~~c~~~~~ 45 (117)
T 4bbq_A 8 RKCKACVQG----E----CGVCHYCRDMKKFGGP---------GRMKQSCVLRQC 45 (117)
T ss_dssp SCSHHHHSC----C----CSCSHHHHHSGGGTSC---------CCSCCCCGGGCC
T ss_pred CcCcCcCCc----C----CCCCCCCcCCcccCCC---------Cccccchhheee
Confidence 457788765 2 9999999999999763 488888876543
No 141
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=60.17 E-value=2.1 Score=36.97 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=32.3
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
....|.||...... +..+..-.|...||..|+... +.. .-.||.|...
T Consensus 39 ~~~~C~IC~~~~~~-~~~~~~l~C~H~Fh~~Ci~~w-l~~-----~~~CP~Cr~~ 86 (91)
T 2l0b_A 39 QEMCCPICCSEYVK-GDVATELPCHHYFHKPCVSIW-LQK-----SGTCPVCRCM 86 (91)
T ss_dssp SCSEETTTTEECCT-TCEEEEETTTEEEEHHHHHHH-HTT-----TCBCTTTCCB
T ss_pred CCCCCcccChhhcC-CCcEEecCCCChHHHHHHHHH-HHc-----CCcCcCcCcc
Confidence 44679999876544 333333349999999999762 321 3479999864
No 142
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=60.05 E-value=2.6 Score=38.23 Aligned_cols=48 Identities=23% Similarity=0.442 Sum_probs=30.6
Q ss_pred cccccccccCCCCC--------------CceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 402 AFTCQICKLTANEV--------------ETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 402 ~~~C~VC~~g~~e~--------------~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
...|.||.....+. +..+.--.|...||..|+... |.. .-.||.|+..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~W-l~~-----~~~CP~Cr~~ 98 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW-LKT-----RQVCPLDNRE 98 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHH-HTT-----CSBCSSSCSB
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHH-HHc-----CCcCcCCCCc
Confidence 35688887654321 112333479999999999762 332 2469999864
No 143
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.69 E-value=1.8 Score=34.37 Aligned_cols=24 Identities=4% Similarity=-0.154 Sum_probs=20.4
Q ss_pred CCCcccCcCccccccc---ccCCCCcc
Q 003406 328 TAPQAVRDQSFRPFIS---QTGNMPNV 351 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk---~SNsCPiC 351 (823)
.-+|.++..||..|.+ ....||+|
T Consensus 37 ~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 37 DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4689999999999987 34689987
No 144
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.52 E-value=4.7 Score=31.07 Aligned_cols=45 Identities=18% Similarity=0.559 Sum_probs=30.2
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSC 452 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~C 452 (823)
+...|.||.....+ ..++ .|...||..|+.. -+..+ .. .-.||.|
T Consensus 14 ~~~~C~IC~~~~~~-p~~~---~CgH~fC~~Ci~~-~~~~~-~~-~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE-PVII---ECGHNFCKACITR-WWEDL-ER-DFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS-CCCC---SSCCCCCHHHHHH-HTTSS-CC-SCCCSCC
T ss_pred cCCCCccCCcccCc-cEeC---CCCCccCHHHHHH-HHHhc-CC-CCCCCCC
Confidence 45679999977655 3332 6899999999976 33332 22 4678877
No 145
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=57.01 E-value=2.4 Score=39.42 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=0.4
Q ss_pred cccccccccCCCC--------------CCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 402 AFTCQICKLTANE--------------VETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 402 ~~~C~VC~~g~~e--------------~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
.+.|.||.....+ ++..+.--.|...||..|+... |.. .-.||.|+..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~W-l~~-----~~~CP~Cr~~ 109 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW-LKT-----RQVCPLDNRE 109 (117)
T ss_dssp C-------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHH-HHc-----CCcCCCCCCe
Confidence 3569999865432 0112222369999999999762 322 2359999864
No 146
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=56.15 E-value=2.3 Score=40.41 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=26.7
Q ss_pred CCcccCcCcccccccccC-CCCccccCCCcce
Q 003406 329 APQAVRDQSFRPFISQTG-NMPNVHQPLQGTN 359 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~SN-sCPiCRq~F~gI~ 359 (823)
-+|.+...||..|.+..+ .||+||+.+....
T Consensus 36 CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 36 CGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 589999999999987765 9999999987554
No 147
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.92 E-value=6.9 Score=31.61 Aligned_cols=49 Identities=24% Similarity=0.546 Sum_probs=33.4
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+...|.||.....+ ..++ .|...||..|+.. -+.. ..+ .-.||.|....
T Consensus 19 ~~~~C~IC~~~~~~--~~~~--~CgH~fC~~Ci~~-~~~~-~~~-~~~CP~Cr~~~ 67 (73)
T 2ysl_A 19 EEVICPICLDILQK--PVTI--DCGHNFCLKCITQ-IGET-SCG-FFKCPLCKTSV 67 (73)
T ss_dssp CCCBCTTTCSBCSS--EEEC--TTCCEEEHHHHHH-HCSS-SCS-CCCCSSSCCCC
T ss_pred cCCEeccCCcccCC--eEEc--CCCChhhHHHHHH-HHHc-CCC-CCCCCCCCCcC
Confidence 45679999976433 3333 8999999999976 2432 123 56799998653
No 148
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=54.80 E-value=3 Score=35.67 Aligned_cols=31 Identities=10% Similarity=0.190 Sum_probs=25.3
Q ss_pred CCcccCcCcccccc-cccCCCCccccCCCcce
Q 003406 329 APQAVRDQSFRPFI-SQTGNMPNVHQPLQGTN 359 (823)
Q Consensus 329 ~~Q~~hd~CIrpWS-k~SNsCPiCRq~F~gI~ 359 (823)
.+|.++..||..|. ...+.||.||+.|..-.
T Consensus 33 CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 33 CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 68999999998654 44589999999998544
No 149
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=54.26 E-value=3.5 Score=35.14 Aligned_cols=30 Identities=7% Similarity=0.090 Sum_probs=24.6
Q ss_pred CCCcc-cCcCcccccccccCCCCccccCCCcceee
Q 003406 328 TAPQA-VRDQSFRPFISQTGNMPNVHQPLQGTNIV 361 (823)
Q Consensus 328 a~~Q~-~hd~CIrpWSk~SNsCPiCRq~F~gI~~V 361 (823)
.-+|. +...|+..|. .||+||+.+.....+
T Consensus 35 pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i 65 (79)
T 2yho_A 35 PCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHV 65 (79)
T ss_dssp TTCBCCBCHHHHTTCS----BCTTTCCBCCEEEEC
T ss_pred CCCCHHHHHHHHHhcC----cCCCCCchhhCeEEE
Confidence 45888 8899999884 899999999976533
No 150
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=54.17 E-value=8.3 Score=31.51 Aligned_cols=50 Identities=22% Similarity=0.452 Sum_probs=33.1
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCC--C-CCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGI--P-RGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~V--P-eG~dWyCp~Cl~~~ 456 (823)
+...|.+|.....+ -.++ .|+..||..|+.- -+..- . .+ .-.||.|....
T Consensus 11 ~~~~C~IC~~~~~~-p~~l---~CgH~fC~~Ci~~-~~~~~~~~~~~-~~~CP~Cr~~~ 63 (79)
T 2egp_A 11 EEVTCPICLELLTE-PLSL---DCGHSLCRACITV-SNKEAVTSMGG-KSSCPVCGISY 63 (79)
T ss_dssp CCCEETTTTEECSS-CCCC---SSSCCCCHHHHSC-CCCCCSSSCCC-CCCCSSSCCCC
T ss_pred cCCCCcCCCcccCC-eeEC---CCCCHHHHHHHHH-HHHhcccCCCC-CCcCCCCCCcC
Confidence 45679999976544 2222 6899999999975 23321 1 22 57899998654
No 151
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=52.52 E-value=2.5 Score=46.53 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=23.1
Q ss_pred CCcccCcCccccccccc-----------CCCCccccCCC
Q 003406 329 APQAVRDQSFRPFISQT-----------GNMPNVHQPLQ 356 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~S-----------NsCPiCRq~F~ 356 (823)
.+|.+|..||.+|-+.. ++||.||+++.
T Consensus 334 C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 334 CVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 57999999999997642 68999999744
No 152
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=52.52 E-value=5.7 Score=43.70 Aligned_cols=35 Identities=31% Similarity=0.606 Sum_probs=25.0
Q ss_pred ccccccccccCCCCCCce--EecC--CCCCccccccccc
Q 003406 401 KAFTCQICKLTANEVETV--VLCD--ACEKGFHLKCLQM 435 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~M--LlCD--gCd~gYHl~CL~P 435 (823)
....|.||-....+.+.+ ..|+ .|...||..||..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~k 345 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEE 345 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHH
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHH
Confidence 346799998654332222 4698 8999999999953
No 153
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=51.21 E-value=6.5 Score=40.36 Aligned_cols=47 Identities=23% Similarity=0.495 Sum_probs=33.9
Q ss_pred cccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 402 AFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 402 ~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
...|.+|..-... -..|..|+..||..|+.- -+... + .-.||.|...
T Consensus 180 i~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~-~~~~~--~-~~~CP~C~~~ 226 (238)
T 3nw0_A 180 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAK-YFQSN--A-EPRCPHCNDY 226 (238)
T ss_dssp CCBCTTTCSBCSS---CEECSSSCCEECHHHHHH-HTTTC--S-SCBCTTTCCB
T ss_pred CCcCcchhhHHhC---CcccCccChHHHHHHHHH-HHHhC--C-CCCCCCCCCC
Confidence 4669999976533 378999999999999965 23332 2 3579999754
No 154
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.79 E-value=5.3 Score=33.29 Aligned_cols=52 Identities=21% Similarity=0.404 Sum_probs=33.8
Q ss_pred ccccccccccCCCCCCc-eEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVET-VVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~-MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+...|.||.....+.+. .+.- .|...||..|+.. -+..- .+ ...||.|....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~-~~~~~-~~-~~~CP~Cr~~~ 66 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEK-LLASS-IN-GVRCPFCSKIT 66 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHH-HHHHC-SS-CBCCTTTCCCB
T ss_pred CCCCCccCCccccccCCCeEEC-CCCChhhHHHHHH-HHHcC-CC-CcCCCCCCCcc
Confidence 45679999976544222 3332 7999999999975 23322 12 47899998653
No 155
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=49.66 E-value=3.1 Score=38.30 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=29.3
Q ss_pred CCCcccCcCcccccccc-cCCCCccccCCCcceee
Q 003406 328 TAPQAVRDQSFRPFISQ-TGNMPNVHQPLQGTNIV 361 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~-SNsCPiCRq~F~gI~~V 361 (823)
...|++..+|+..|.++ .+.||.|+.++..|+..
T Consensus 19 PCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 19 PCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp TTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred cccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 35799999999999855 59999999999998855
No 156
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.30 E-value=5.6 Score=32.63 Aligned_cols=50 Identities=30% Similarity=0.601 Sum_probs=32.7
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCC--CCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKG--IPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~--VPeG~dWyCp~Cl~~~ 456 (823)
+...|.+|.....+ .+++ .|...||..|+.. -+.. ...+ .-.||.|....
T Consensus 18 ~~~~C~IC~~~~~~--p~~~--~CgH~fC~~Ci~~-~~~~~~~~~~-~~~CP~Cr~~~ 69 (85)
T 2ecv_A 18 EEVTCPICLELLTQ--PLSL--DCGHSFCQACLTA-NHKKSMLDKG-ESSCPVCRISY 69 (85)
T ss_dssp CCCCCTTTCSCCSS--CBCC--SSSCCBCTTHHHH-HHHHHHHTTS-CCCCTTTCCSS
T ss_pred CCCCCCCCCcccCC--ceeC--CCCCHHHHHHHHH-HHHHhhcCCC-CCcCCCCCCcc
Confidence 45679999976544 2222 6899999999964 2221 1223 56899998654
No 157
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=48.71 E-value=8.2 Score=34.24 Aligned_cols=46 Identities=24% Similarity=0.514 Sum_probs=32.4
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
+...|.||.....+ ...+ .|+..||..|+.. -+. .+ ...||.|...
T Consensus 14 ~~~~C~iC~~~~~~--p~~~--~CgH~fC~~Ci~~-~~~---~~-~~~CP~Cr~~ 59 (115)
T 3l11_A 14 SECQCGICMEILVE--PVTL--PCNHTLCKPCFQS-TVE---KA-SLCCPFCRRR 59 (115)
T ss_dssp HHHBCTTTCSBCSS--CEEC--TTSCEECHHHHCC-CCC---TT-TSBCTTTCCB
T ss_pred CCCCCccCCcccCc--eeEc--CCCCHHhHHHHHH-HHh---HC-cCCCCCCCcc
Confidence 34679999976443 3333 7999999999965 232 34 5789999864
No 158
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.80 E-value=4.5 Score=32.12 Aligned_cols=49 Identities=24% Similarity=0.543 Sum_probs=32.3
Q ss_pred ccccccccccCCCCC---CceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 401 KAFTCQICKLTANEV---ETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~---~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
+...|.||.....+. +..+..-.|...||..|+.. -+.. .-.||.|...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~-~~~~-----~~~CP~Cr~~ 65 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD-SLKN-----ANTCPTCRKK 65 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHH-HHHH-----CSSCTTTCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHH-HHHc-----CCCCCCCCCc
Confidence 456799999754321 23445568999999999964 1221 2369999854
No 159
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.61 E-value=4.4 Score=32.06 Aligned_cols=46 Identities=26% Similarity=0.620 Sum_probs=29.7
Q ss_pred cccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccc
Q 003406 400 SKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSC 452 (823)
Q Consensus 400 ~~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~C 452 (823)
.+...|.||.....+ ..++ .|...||..|+.. -+.. ..+ .-.||.|
T Consensus 18 ~~~~~C~IC~~~~~~--p~~~--~CgH~fC~~Ci~~-~~~~-~~~-~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK--PVTI--DCGHNFCLKCITQ-IGET-SCG-FFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS--CEEC--TTSSEECHHHHHH-HHHH-CSS-CCCCSCC
T ss_pred ccCCCCCcCCchhCC--eEEe--CCCCcchHHHHHH-HHHc-CCC-CCcCcCC
Confidence 345679999876443 3333 7999999999965 2332 112 4568877
No 160
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=46.34 E-value=2.9 Score=32.77 Aligned_cols=49 Identities=24% Similarity=0.493 Sum_probs=31.9
Q ss_pred cccccccccCCCC---CCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 402 AFTCQICKLTANE---VETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 402 ~~~C~VC~~g~~e---~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
...|.||.....+ .+..+..-.|+..||..|+.. -+.. ...||.|....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~-~~~~-----~~~CP~Cr~~~ 54 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD-SLKN-----ANTCPTCRKKI 54 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHH-HHHH-----CSBCTTTCCBC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHH-HHHc-----CCCCCCCCccC
Confidence 3569999875332 123445568999999999964 1221 24799998654
No 161
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=45.99 E-value=2 Score=40.51 Aligned_cols=28 Identities=7% Similarity=-0.037 Sum_probs=24.3
Q ss_pred CCCcccCcCcccccccccC-CCCccccCC
Q 003406 328 TAPQAVRDQSFRPFISQTG-NMPNVHQPL 355 (823)
Q Consensus 328 a~~Q~~hd~CIrpWSk~SN-sCPiCRq~F 355 (823)
..+|.++..||..|.+..+ .||+||+..
T Consensus 48 ~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 48 QCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp TTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 4689999999999988665 899999964
No 162
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.93 E-value=8.1 Score=30.89 Aligned_cols=47 Identities=17% Similarity=0.463 Sum_probs=32.4
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+...|.+|.....+ -.+ -.|+..||..|+.. -+. .+ ...||.|....
T Consensus 14 ~~~~C~IC~~~~~~-p~~---~~CgH~fC~~Ci~~-~~~---~~-~~~CP~Cr~~~ 60 (66)
T 2ecy_A 14 DKYKCEKCHLVLCS-PKQ---TECGHRFCESCMAA-LLS---SS-SPKCTACQESI 60 (66)
T ss_dssp CCEECTTTCCEESS-CCC---CSSSCCCCHHHHHH-HHT---TS-SCCCTTTCCCC
T ss_pred cCCCCCCCChHhcC-eeE---CCCCCHHHHHHHHH-HHH---hC-cCCCCCCCcCC
Confidence 44679999976544 222 27999999999975 233 23 56799998653
No 163
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=41.91 E-value=13 Score=29.62 Aligned_cols=17 Identities=24% Similarity=0.599 Sum_probs=13.2
Q ss_pred cCCCCCCCCCccccccccc
Q 003406 437 NQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 437 pL~~VPeG~dWyCp~Cl~~ 455 (823)
+...+|+. |.||.|-..
T Consensus 23 ~f~~lP~d--w~CP~Cg~~ 39 (46)
T 6rxn_A 23 PFDQLPDD--WCCPVCGVS 39 (46)
T ss_dssp CGGGSCTT--CBCTTTCCB
T ss_pred chhhCCCC--CcCcCCCCc
Confidence 35678875 999999854
No 164
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=41.83 E-value=5.5 Score=37.67 Aligned_cols=47 Identities=21% Similarity=0.522 Sum_probs=33.4
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
+...|.||.....+ -+.+..|...||..|+.. -+. .+ ...||.|...
T Consensus 53 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~-~~~---~~-~~~CP~Cr~~ 99 (165)
T 2ckl_B 53 SELMCPICLDMLKN---TMTTKECLHRFCADCIIT-ALR---SG-NKECPTCRKK 99 (165)
T ss_dssp HHHBCTTTSSBCSS---EEEETTTCCEEEHHHHHH-HHH---TT-CCBCTTTCCB
T ss_pred CCCCCcccChHhhC---cCEeCCCCChhHHHHHHH-HHH---hC-cCCCCCCCCc
Confidence 44679999866433 445568999999999965 233 23 5679999864
No 165
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.91 E-value=13 Score=30.21 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=30.8
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
+...|.||.....+ .+++ .|...||..|+.. -+. . ...||.|...
T Consensus 14 ~~~~C~IC~~~~~~--~~~~--~CgH~fC~~Ci~~-~~~----~-~~~CP~Cr~~ 58 (71)
T 2d8t_A 14 TVPECAICLQTCVH--PVSL--PCKHVFCYLCVKG-ASW----L-GKRCALCRQE 58 (71)
T ss_dssp SCCBCSSSSSBCSS--EEEE--TTTEEEEHHHHHH-CTT----C-SSBCSSSCCB
T ss_pred CCCCCccCCcccCC--CEEc--cCCCHHHHHHHHH-HHH----C-CCcCcCcCch
Confidence 44679999876433 3333 5999999999965 232 1 3679999865
No 166
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=40.03 E-value=6.7 Score=32.19 Aligned_cols=50 Identities=26% Similarity=0.541 Sum_probs=32.7
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCC--CCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGI--PRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~V--PeG~dWyCp~Cl~~~ 456 (823)
+...|.||.....+ .++ . .|...||..|+.. -+..- ..+ ...||.|....
T Consensus 18 ~~~~C~IC~~~~~~--p~~-~-~CgH~fC~~Ci~~-~~~~~~~~~~-~~~CP~Cr~~~ 69 (85)
T 2ecw_A 18 EEVTCPICLELLKE--PVS-A-DCNHSFCRACITL-NYESNRNTDG-KGNCPVCRVPY 69 (85)
T ss_dssp TTTSCTTTCSCCSS--CEE-C-TTSCCBCHHHHHH-HHHHSBCTTS-CBCCTTTCCCC
T ss_pred cCCCCcCCChhhCc--cee-C-CCCCHHHHHHHHH-HHHhccCCCC-CCCCCCCCCcC
Confidence 45679999876544 232 2 5899999999965 23221 123 58899998653
No 167
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.99 E-value=17 Score=29.54 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=31.8
Q ss_pred cccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 400 SKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 400 ~~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
.+...|.||.....+ -+....|...||..|+.. -+.. .-.||.|....
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~-~~~~-----~~~CP~Cr~~~ 60 (72)
T 2djb_A 13 TPYILCSICKGYLID---ATTITECLHTFCKSCIVR-HFYY-----SNRCPKCNIVV 60 (72)
T ss_dssp CGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHH-HHHH-----CSSCTTTCCCC
T ss_pred CCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHH-HHHc-----CCcCCCcCccc
Confidence 345779999865433 233457999999999964 1211 24699998653
No 168
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=39.61 E-value=8.2 Score=33.75 Aligned_cols=47 Identities=23% Similarity=0.497 Sum_probs=33.6
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
+...|.||...- ..-+.|-.|+..||..|+.. -+..- ...||.|...
T Consensus 21 ~~~~C~IC~~~~---~~p~~~~~CgH~FC~~Ci~~-~~~~~----~~~CP~Cr~~ 67 (100)
T 3lrq_A 21 EVFRCFICMEKL---RDARLCPHCSKLCCFSCIRR-WLTEQ----RAQCPHCRAP 67 (100)
T ss_dssp HHTBCTTTCSBC---SSEEECTTTCCEEEHHHHHH-HHHHT----CSBCTTTCCB
T ss_pred CCCCCccCCccc---cCccccCCCCChhhHHHHHH-HHHHC----cCCCCCCCCc
Confidence 446799999764 34567789999999999965 22211 2579999865
No 169
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=39.57 E-value=9.9 Score=41.09 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=24.3
Q ss_pred CCCcc-cCcCcccccccccCCCCccccCCCcce
Q 003406 328 TAPQA-VRDQSFRPFISQTGNMPNVHQPLQGTN 359 (823)
Q Consensus 328 a~~Q~-~hd~CIrpWSk~SNsCPiCRq~F~gI~ 359 (823)
..+|. ++..|+..| ..||+||+.+..+.
T Consensus 312 pCgH~~fC~~C~~~~----~~CP~CR~~i~~~~ 340 (345)
T 3t6p_A 312 PCGHLVVCQECAPSL----RKCPICRGIIKGTV 340 (345)
T ss_dssp TTCCEEECTTTGGGC----SBCTTTCCBCCEEE
T ss_pred CCCChhHhHHHHhcC----CcCCCCCCCccCeE
Confidence 46899 999999999 78999999998653
No 170
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.84 E-value=7.8 Score=32.15 Aligned_cols=28 Identities=7% Similarity=-0.018 Sum_probs=22.5
Q ss_pred CCCcc-cCcCcccccccccCCCCccccCCCcce
Q 003406 328 TAPQA-VRDQSFRPFISQTGNMPNVHQPLQGTN 359 (823)
Q Consensus 328 a~~Q~-~hd~CIrpWSk~SNsCPiCRq~F~gI~ 359 (823)
.-+|. +...|+.. ...||+||+.+....
T Consensus 42 pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 42 PCGHLVTCKQCAEA----VDKCPMCYTVITFKQ 70 (75)
T ss_dssp SSCCCCBCHHHHHH----CSBCTTTCCBCCCCC
T ss_pred cCCCHHHHHHHhhC----CCCCccCCceecCcE
Confidence 45898 99999964 378999999988643
No 171
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=38.58 E-value=7.1 Score=40.07 Aligned_cols=30 Identities=3% Similarity=0.042 Sum_probs=25.0
Q ss_pred CCcccCcCccccccccc--CCCCccccCCCcc
Q 003406 329 APQAVRDQSFRPFISQT--GNMPNVHQPLQGT 358 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~S--NsCPiCRq~F~gI 358 (823)
.++.+|..|+..|.+.. ..||.|+..|..-
T Consensus 199 C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 199 CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp SCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred cChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 47889999999997654 4999999998744
No 172
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=38.19 E-value=5.4 Score=32.65 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=30.2
Q ss_pred cCCCcccCcCcccccccccCCCCccccCCCcceee
Q 003406 327 RTAPQAVRDQSFRPFISQTGNMPNVHQPLQGTNIV 361 (823)
Q Consensus 327 Ra~~Q~~hd~CIrpWSk~SNsCPiCRq~F~gI~~V 361 (823)
+..+|.|.-.||..|-...++||++++++..-+++
T Consensus 20 ~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 20 PKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV 54 (61)
T ss_dssp TTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred CCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcE
Confidence 35689999999999998888999999999866655
No 173
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=36.91 E-value=11 Score=32.76 Aligned_cols=47 Identities=21% Similarity=0.414 Sum_probs=31.3
Q ss_pred cccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 402 AFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 402 ~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
...|.+|.....+ -.++ .|+..||..|+.. -+..- .+ ...||.|...
T Consensus 21 ~~~C~IC~~~~~~-p~~~---~CgH~fC~~Ci~~-~~~~~-~~-~~~CP~Cr~~ 67 (112)
T 1jm7_A 21 ILECPICLELIKE-PVST---KCDHIFCKFCMLK-LLNQK-KG-PSQCPLCKND 67 (112)
T ss_dssp HTSCSSSCCCCSS-CCBC---TTSCCCCSHHHHH-HHHSS-SS-SCCCTTTSCC
T ss_pred CCCCcccChhhcC-eEEC---CCCCHHHHHHHHH-HHHhC-CC-CCCCcCCCCc
Confidence 3569999976544 2222 6999999999865 23322 23 4789999864
No 174
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=36.91 E-value=8.6 Score=38.15 Aligned_cols=45 Identities=9% Similarity=0.265 Sum_probs=32.1
Q ss_pred CCcccCcCcccccccccC-CCCccccCCCcceeecCCCCCCCchhhhHHHHHh
Q 003406 329 APQAVRDQSFRPFISQTG-NMPNVHQPLQGTNIVQAPQFGSNHGEIAKIVQKL 380 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~SN-sCPiCRq~F~gI~~Vq~P~~~s~hkeIaKiVqkl 380 (823)
.||.|.-.||..|-...+ +||.|+++|..-.++ .+..++..+...
T Consensus 124 ~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~-------pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 124 SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLI-------PNLAMKEVIDAF 169 (179)
T ss_dssp TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE-------ECHHHHHHHHHH
T ss_pred CCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCc-------chHHHHHHHHHH
Confidence 379999999999987643 599999999855433 233456655543
No 175
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=36.24 E-value=9.3 Score=34.38 Aligned_cols=47 Identities=17% Similarity=0.454 Sum_probs=32.3
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+...|.||.....+ .+.+ .|+..||..|+.. -+. .+ ...||.|....
T Consensus 51 ~~~~C~IC~~~~~~--p~~~--~CgH~fC~~Ci~~-~~~---~~-~~~CP~Cr~~~ 97 (124)
T 3fl2_A 51 ETFQCICCQELVFR--PITT--VCQHNVCKDCLDR-SFR---AQ-VFSCPACRYDL 97 (124)
T ss_dssp HHTBCTTTSSBCSS--EEEC--TTSCEEEHHHHHH-HHH---TT-CCBCTTTCCBC
T ss_pred cCCCCCcCChHHcC--cEEe--eCCCcccHHHHHH-HHh---HC-cCCCCCCCccC
Confidence 44679999976443 3333 7999999999965 233 22 45899998654
No 176
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.79 E-value=8.4 Score=33.53 Aligned_cols=46 Identities=4% Similarity=0.249 Sum_probs=32.5
Q ss_pred CCcccCcCccccccccc------CCCCc--cccC-CCcceeecCCCCCCCchhhhHHHHHhc
Q 003406 329 APQAVRDQSFRPFISQT------GNMPN--VHQP-LQGTNIVQAPQFGSNHGEIAKIVQKLL 381 (823)
Q Consensus 329 ~~Q~~hd~CIrpWSk~S------NsCPi--CRq~-F~gI~~Vq~P~~~s~hkeIaKiVqkll 381 (823)
.+|.|.-.||..|-... .+||. |++. +..-.++ .+..+++++..+.
T Consensus 26 cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~-------pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 26 CGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI-------QDEALRRAIENHN 80 (94)
T ss_dssp SCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEE-------ECHHHHHHHHHHH
T ss_pred CCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCc-------CCHHHHHHHHHHH
Confidence 68999999999998754 49999 8877 5433333 3445666666554
No 177
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=31.65 E-value=14 Score=27.55 Aligned_cols=13 Identities=31% Similarity=1.106 Sum_probs=10.8
Q ss_pred CCCCcccccccccc
Q 003406 443 RGGEWHCMSCLKLS 456 (823)
Q Consensus 443 eG~dWyCp~Cl~~~ 456 (823)
+| +|.|..|+...
T Consensus 16 eg-dwcchkcvpeg 28 (36)
T 4b2u_A 16 EG-DWCCHKCVPEG 28 (36)
T ss_dssp GC-CSSSSEEEEET
T ss_pred cc-CeeeecccccC
Confidence 57 99999999753
No 178
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=31.29 E-value=47 Score=25.83 Aligned_cols=27 Identities=15% Similarity=0.443 Sum_probs=18.1
Q ss_pred ccccccccC---CCCCCceEecCCCCCccc
Q 003406 403 FTCQICKLT---ANEVETVVLCDACEKGFH 429 (823)
Q Consensus 403 ~~C~VC~~g---~~e~~~MLlCDgCd~gYH 429 (823)
..|..|+.. .+.....|.|..|+..|-
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBCC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCccc
Confidence 469999752 222245688999988773
No 179
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=31.20 E-value=12 Score=30.66 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=32.4
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+...|.+|...-.+ .+++ .|+..|+..|+.. -+. .+ .-.||.|....
T Consensus 7 ~~~~C~IC~~~~~~--Pv~~--~CgH~fc~~Ci~~-~~~---~~-~~~CP~C~~~~ 53 (78)
T 1t1h_A 7 EYFRCPISLELMKD--PVIV--STGQTYERSSIQK-WLD---AG-HKTCPKSQETL 53 (78)
T ss_dssp SSSSCTTTSCCCSS--EEEE--TTTEEEEHHHHHH-HHT---TT-CCBCTTTCCBC
T ss_pred ccCCCCCccccccC--CEEc--CCCCeecHHHHHH-HHH---HC-cCCCCCCcCCC
Confidence 44679999976433 3333 6999999999965 243 34 57899998653
No 180
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.83 E-value=12 Score=29.99 Aligned_cols=45 Identities=20% Similarity=0.406 Sum_probs=31.3
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+...|.||.....+ . --.|...||..|+.. -+. . ...||.|....
T Consensus 14 ~~~~C~IC~~~~~~---~--~~~CgH~fc~~Ci~~-~~~----~-~~~CP~Cr~~~ 58 (70)
T 2ecn_A 14 DEEECCICMDGRAD---L--ILPCAHSFCQKCIDK-WSD----R-HRNCPICRLQM 58 (70)
T ss_dssp CCCCCSSSCCSCCS---E--EETTTEEECHHHHHH-SSC----C-CSSCHHHHHCT
T ss_pred CCCCCeeCCcCccC---c--ccCCCCcccHHHHHH-HHH----C-cCcCCCcCCcc
Confidence 44679999866432 2 235888899999976 233 3 57899998654
No 181
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=30.50 E-value=10 Score=35.00 Aligned_cols=46 Identities=28% Similarity=0.493 Sum_probs=30.4
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+...|.||.....+ ..++ .|+..||..|+.. -+. . .-.||.|....
T Consensus 52 ~~~~C~iC~~~~~~--~~~~--~CgH~fc~~Ci~~-~~~----~-~~~CP~Cr~~~ 97 (138)
T 4ayc_A 52 NELQCIICSEYFIE--AVTL--NCAHSFCSYCINE-WMK----R-KIECPICRKDI 97 (138)
T ss_dssp HHSBCTTTCSBCSS--EEEE--TTSCEEEHHHHHH-HTT----T-CSBCTTTCCBC
T ss_pred ccCCCcccCcccCC--ceEC--CCCCCccHHHHHH-HHH----c-CCcCCCCCCcC
Confidence 34569999976543 2222 5889999999865 232 1 35699998643
No 182
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=28.65 E-value=19 Score=29.55 Aligned_cols=49 Identities=20% Similarity=0.514 Sum_probs=32.2
Q ss_pred cccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 400 SKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 400 ~~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
.+...|.||.....+ . +.-..|...||..|+.. -+..- + .-.||.|...
T Consensus 13 ~~~~~C~IC~~~~~~--p-~~~~~CgH~fC~~Ci~~-~~~~~--~-~~~CP~Cr~~ 61 (74)
T 2yur_A 13 PDELLCLICKDIMTD--A-VVIPCCGNSYCDECIRT-ALLES--D-EHTCPTCHQN 61 (74)
T ss_dssp CGGGSCSSSCCCCTT--C-EECSSSCCEECTTHHHH-HHHHS--S-SSCCSSSCCS
T ss_pred CCCCCCcCCChHHhC--C-eEcCCCCCHHHHHHHHH-HHHhc--C-CCcCCCCCCc
Confidence 345779999876433 2 33345999999999965 23221 2 3579999864
No 183
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=28.39 E-value=38 Score=26.45 Aligned_cols=43 Identities=21% Similarity=0.481 Sum_probs=28.9
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+...|.+|.....+ -.++ .|...|+..|+.. . ...||.|....
T Consensus 5 ~~~~C~IC~~~~~~-p~~l---~CgH~fC~~Ci~~--------~-~~~CP~Cr~~~ 47 (56)
T 1bor_A 5 QFLRCQQCQAEAKC-PKLL---PCLHTLCSGCLEA--------S-GMQCPICQAPW 47 (56)
T ss_dssp CCSSCSSSCSSCBC-CSCS---TTSCCSBTTTCSS--------S-SSSCSSCCSSS
T ss_pred cCCCceEeCCccCC-eEEc---CCCCcccHHHHcc--------C-CCCCCcCCcEe
Confidence 34679999976554 2333 4777788888742 2 46799998654
No 184
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=28.35 E-value=24 Score=31.08 Aligned_cols=30 Identities=33% Similarity=0.866 Sum_probs=22.8
Q ss_pred ccccccccCCCCCCceEecCC--CCCcccccccc
Q 003406 403 FTCQICKLTANEVETVVLCDA--CEKGFHLKCLQ 434 (823)
Q Consensus 403 ~~C~VC~~g~~e~~~MLlCDg--Cd~gYHl~CL~ 434 (823)
..|.+|+... . +.-+-|.. |...||..|-.
T Consensus 18 l~C~iC~~~~-~-GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 18 LTCYLCKQKG-V-GASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCBTTTTBCC-S-SCEEECSCTTTCCEEEHHHHH
T ss_pred CCCcCCCCCC-C-cEeEecCCCCCCCcCcHHHHH
Confidence 4699998531 1 46788874 99999999964
No 185
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=26.55 E-value=36 Score=30.10 Aligned_cols=16 Identities=31% Similarity=0.800 Sum_probs=12.6
Q ss_pred CCCCCCCCCccccccccc
Q 003406 438 QKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 438 L~~VPeG~dWyCp~Cl~~ 455 (823)
...+|+. |.||.|-..
T Consensus 54 fedlPdd--W~CPvCga~ 69 (81)
T 2kn9_A 54 WDDIPDD--WSCPDCGAA 69 (81)
T ss_dssp TTTSCTT--CCCTTTCCC
T ss_pred hhHCCCC--CcCCCCCCC
Confidence 4678875 999999863
No 186
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.87 E-value=30 Score=28.56 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=22.5
Q ss_pred CCCcc-cCcCcccccccccCCCCccccCCCcce
Q 003406 328 TAPQA-VRDQSFRPFISQTGNMPNVHQPLQGTN 359 (823)
Q Consensus 328 a~~Q~-~hd~CIrpWSk~SNsCPiCRq~F~gI~ 359 (823)
.-+|. +...|+.. ...||+||+.+..+.
T Consensus 32 pCgH~~~C~~C~~~----~~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 32 PCRHTCLCDGCVKY----FQQCPMCRQFVQESF 60 (68)
T ss_dssp TTTBCCSCTTHHHH----CSSCTTTCCCCCCEE
T ss_pred CCCChhhhHHHHhc----CCCCCCCCcchhceE
Confidence 45788 99999973 479999999988654
No 187
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=24.39 E-value=26 Score=30.70 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=32.0
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+...|.+|.....+ -+....|+..||..|+.- -+.. .-.||.|....
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~-~~~~-----~~~CP~Cr~~~ 60 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIECLHSFCKTCIVR-YLET-----SKYCPICDVQV 60 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHH-HHTS-----CSBCTTTCCBS
T ss_pred CcCCCccCChHHhC---cCEeCCCCChhhHHHHHH-HHHh-----CCcCcCCCccc
Confidence 45679999865433 344468999999999965 2221 25799998653
No 188
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.23 E-value=61 Score=28.79 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=29.2
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+...|.||.....+ ..++ ..|+..|+..|+.- -+. -.||.|....
T Consensus 21 ~~~~C~IC~~~~~~--pv~~-~~CgH~fC~~Ci~~-~~~-------~~CP~Cr~~~ 65 (117)
T 1jm7_B 21 KLLRCSRCTNILRE--PVCL-GGCEHIFCSNCVSD-CIG-------TGCPVCYTPA 65 (117)
T ss_dssp HTTSCSSSCSCCSS--CBCC-CSSSCCBCTTTGGG-GTT-------TBCSSSCCBC
T ss_pred hCCCCCCCChHhhC--ccEe-CCCCCHHHHHHHHH-Hhc-------CCCcCCCCcC
Confidence 34679999876544 2222 26888888889854 121 3699998653
No 189
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=22.77 E-value=21 Score=29.16 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=31.8
Q ss_pred cccccccccCCCCCCceEec--CCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 402 AFTCQICKLTANEVETVVLC--DACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 402 ~~~C~VC~~g~~e~~~MLlC--DgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
...|.||....++ ..++-| .+.-+.||..||... +.. .+ .+.|+.|...
T Consensus 6 ~~~CrIC~~~~~~-~l~~PC~C~gs~~~~H~~Cl~~W-~~~--~~-~~~C~~C~~~ 56 (60)
T 1vyx_A 6 VPVCWICNEELGN-ERFRACGCTGELENVHRSCLSTW-LTI--SR-NTACQICGVV 56 (60)
T ss_dssp CCEETTTTEECSC-CCCCSCCCSSGGGSCCHHHHHHH-HHH--HT-CSBCTTTCCB
T ss_pred CCEeEEeecCCCC-ceecCcCCCCchhhhHHHHHHHH-HHh--CC-CCccCCCCCe
Confidence 4679999876444 344444 344458999999763 321 23 5889999854
No 190
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=22.52 E-value=61 Score=26.22 Aligned_cols=16 Identities=25% Similarity=0.729 Sum_probs=12.6
Q ss_pred CCCCCCCCCccccccccc
Q 003406 438 QKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 438 L~~VPeG~dWyCp~Cl~~ 455 (823)
...+|+. |.||.|-..
T Consensus 30 f~~lP~d--w~CP~Cg~~ 45 (52)
T 1e8j_A 30 FEDLPDD--WACPVCGAS 45 (52)
T ss_dssp TTSSCTT--CCCSSSCCC
T ss_pred hHHCCCC--CcCCCCCCc
Confidence 5677875 999999864
No 191
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=22.43 E-value=34 Score=30.54 Aligned_cols=47 Identities=19% Similarity=0.492 Sum_probs=30.7
Q ss_pred cccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCccccccccc
Q 003406 400 SKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 400 ~~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~ 455 (823)
.+...|.+|.....+ . +.. .|+..|+..|+.. -+. .. ...||.|...
T Consensus 16 ~~~~~C~IC~~~~~~--p-~~~-~CgH~fC~~Ci~~-~~~---~~-~~~CP~Cr~~ 62 (118)
T 3hct_A 16 ESKYECPICLMALRE--A-VQT-PCGHRFCKACIIK-SIR---DA-GHKCPVDNEI 62 (118)
T ss_dssp CGGGBCTTTCSBCSS--E-EEC-TTSCEEEHHHHHH-HHH---HH-CSBCTTTCCB
T ss_pred CCCCCCCcCChhhcC--e-EEC-CcCChhhHHHHHH-HHh---hC-CCCCCCCCCC
Confidence 345679999976443 2 333 6999999999964 121 11 2379999754
No 192
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=22.37 E-value=40 Score=28.86 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=12.3
Q ss_pred CCCCCCCCCccccccccc
Q 003406 438 QKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 438 L~~VPeG~dWyCp~Cl~~ 455 (823)
...+|+. |.||.|-..
T Consensus 34 f~~lPdd--w~CP~Cga~ 49 (70)
T 1dx8_A 34 FVDLSDS--FMCPACRSP 49 (70)
T ss_dssp GGGSCTT--CBCTTTCCB
T ss_pred hhhCCCC--CcCCCCCCC
Confidence 4567774 999999864
No 193
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=22.18 E-value=20 Score=39.21 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=12.5
Q ss_pred EecCCCCCCCCccCCCCC
Q 003406 506 TVNGSSGGSGALGSNSND 523 (823)
Q Consensus 506 VEYGADIhStt~GSGFP~ 523 (823)
++||||++ ||+||.
T Consensus 134 p~YgaD~~----gS~F~~ 147 (354)
T 3dxt_A 134 PIYGADIS----GSLFDE 147 (354)
T ss_dssp CEEEEEEE----CCCSCT
T ss_pred ceeeecCC----CcccCC
Confidence 59999997 999995
No 194
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=21.78 E-value=48 Score=28.17 Aligned_cols=50 Identities=16% Similarity=0.354 Sum_probs=32.6
Q ss_pred ccccccccccCCCCCC-ceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVE-TVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~-~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+...|.||.......+ ..+-| .|+..|+..|+.- .+. .+ ...||.|+...
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~-~~~---~~-~~~CP~CR~~~ 60 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHR-IRT---DE-NGLCPACRKPY 60 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHH-HTT---SS-CSBCTTTCCBC
T ss_pred cCCcCCccCccCcccccccccc-CCCCCcCHHHHHH-HHh---cC-CCCCCCCCCcc
Confidence 4467999997543211 22224 6888999999864 222 24 67999999754
No 195
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=21.32 E-value=26 Score=30.15 Aligned_cols=47 Identities=17% Similarity=0.384 Sum_probs=31.8
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+...|.+|.....+ -+..-.|+..||..|+.. -+. . .-.||.|....
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~-~~~----~-~~~CP~Cr~~~ 67 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQCSHNYCSLCIRK-FLS----Y-KTQCPTCCVTV 67 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHH-HHT----T-CCBCTTTCCBC
T ss_pred CCCCcccCChhhCC---cCEECCCCCHhhHHHHHH-HHH----C-CCCCCCCCCcC
Confidence 44679999876433 233357999999999965 232 1 35799998653
No 196
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=21.20 E-value=23 Score=33.54 Aligned_cols=47 Identities=23% Similarity=0.494 Sum_probs=31.8
Q ss_pred ccccccccccCCCCCCceEecCCCCCcccccccccCcCCCCCCCCCcccccccccc
Q 003406 401 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 456 (823)
Q Consensus 401 ~~~~C~VC~~g~~e~~~MLlCDgCd~gYHl~CL~PppL~~VPeG~dWyCp~Cl~~~ 456 (823)
+...|.||.....+ ..+ -.|...|+..|+.. -+.. + ...||.|....
T Consensus 77 ~~~~C~IC~~~~~~--pv~--~~CgH~fC~~Ci~~-~~~~---~-~~~CP~Cr~~~ 123 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ--PVT--TECFHNVCKDCLQR-SFKA---Q-VFSCPACRHDL 123 (150)
T ss_dssp HHTBCTTTSSBCSS--EEE--CTTSCEEEHHHHHH-HHHT---T-CCBCTTTCCBC
T ss_pred cCCEeecCChhhcC--CEE--cCCCCchhHHHHHH-HHHh---C-CCcCCCCCccC
Confidence 34679999876433 233 37999999999965 2331 3 45799998754
No 197
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=21.08 E-value=37 Score=30.43 Aligned_cols=16 Identities=31% Similarity=0.792 Sum_probs=12.6
Q ss_pred CCCCCCCCCccccccccc
Q 003406 438 QKGIPRGGEWHCMSCLKL 455 (823)
Q Consensus 438 L~~VPeG~dWyCp~Cl~~ 455 (823)
...+|+. |.||.|-..
T Consensus 62 fedlPdd--W~CPvCga~ 77 (87)
T 1s24_A 62 FEDIPDD--WCCPDCGAT 77 (87)
T ss_dssp GGGCCTT--CCCSSSCCC
T ss_pred hhHCCCC--CCCCCCCCC
Confidence 4678875 999999863
No 198
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=20.88 E-value=20 Score=39.53 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=12.3
Q ss_pred EecCCCCCCCCccCCCCC
Q 003406 506 TVNGSSGGSGALGSNSND 523 (823)
Q Consensus 506 VEYGADIhStt~GSGFP~ 523 (823)
++||||+ +||+||.
T Consensus 181 p~YgaD~----~GS~F~~ 194 (373)
T 3opt_A 181 PMYGADT----PGSIFPE 194 (373)
T ss_dssp CEEEEEE----ECCCSCT
T ss_pred ceEecCC----CCCCcCC
Confidence 6999996 7999995
Done!