Query 003408
Match_columns 822
No_of_seqs 225 out of 404
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 22:53:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2073 SAP family cell cycle 100.0 3E-110 6E-115 979.8 48.8 729 1-748 1-776 (838)
2 PF04499 SAPS: SIT4 phosphatas 100.0 1.6E-72 3.5E-77 639.0 27.5 345 129-488 1-475 (475)
3 KOG2073 SAP family cell cycle 99.1 2.1E-08 4.5E-13 120.8 27.9 359 26-451 141-558 (838)
4 KOG3546 Collagens (type XV) [E 96.8 0.0018 4E-08 75.1 6.3 19 737-755 432-450 (1167)
5 KOG1924 RhoA GTPase effector D 93.3 0.23 5.1E-06 59.8 8.0 36 185-223 174-215 (1102)
6 PF10508 Proteasom_PSMB: Prote 92.9 2.9 6.4E-05 49.4 16.5 210 107-372 43-255 (503)
7 PF04499 SAPS: SIT4 phosphatas 91.9 1.2 2.5E-05 52.5 11.5 130 87-224 6-150 (475)
8 KOG1924 RhoA GTPase effector D 91.2 0.59 1.3E-05 56.6 8.0 8 515-522 453-460 (1102)
9 PF05804 KAP: Kinesin-associat 88.6 24 0.00053 43.7 19.0 78 333-414 551-628 (708)
10 KOG0946 ER-Golgi vesicle-tethe 87.9 20 0.00043 44.4 17.1 72 192-267 166-241 (970)
11 PF10508 Proteasom_PSMB: Prote 79.9 1.4E+02 0.003 35.5 24.4 284 97-449 114-420 (503)
12 PF05616 Neisseria_TspB: Neiss 65.3 31 0.00068 40.5 9.3 11 457-467 163-173 (502)
13 PF06025 DUF913: Domain of Unk 63.7 1.7E+02 0.0036 33.8 14.8 126 97-225 101-235 (379)
14 PF07462 MSP1_C: Merozoite sur 62.8 15 0.00033 43.5 6.3 9 493-501 165-173 (574)
15 PF04826 Arm_2: Armadillo-like 61.4 2.5E+02 0.0053 30.6 16.3 146 186-379 48-194 (254)
16 PHA02030 hypothetical protein 53.1 30 0.00065 38.3 6.1 19 726-744 283-301 (336)
17 PF01603 B56: Protein phosphat 52.3 2.1E+02 0.0045 33.2 13.3 112 102-222 45-162 (409)
18 KOG2085 Serine/threonine prote 50.4 2.8E+02 0.006 32.5 13.4 45 161-209 150-194 (457)
19 PHA02030 hypothetical protein 49.3 52 0.0011 36.4 7.2 55 726-784 280-334 (336)
20 KOG0166 Karyopherin (importin) 47.5 5.9E+02 0.013 30.8 16.8 234 104-391 196-436 (514)
21 KOG1566 Conserved protein Mo25 45.7 56 0.0012 36.7 6.9 53 13-66 127-179 (342)
22 PF00514 Arm: Armadillo/beta-c 45.3 49 0.0011 25.1 4.7 37 185-222 5-41 (41)
23 PRK13108 prolipoprotein diacyl 44.4 1.5E+02 0.0032 35.2 10.5 12 296-307 138-149 (460)
24 PHA03247 large tegument protei 41.3 65 0.0014 45.0 7.6 12 179-190 1664-1675(3151)
25 KOG2023 Nuclear transport rece 40.2 5E+02 0.011 32.4 13.9 140 303-480 130-289 (885)
26 PHA03247 large tegument protei 39.4 81 0.0018 44.1 8.0 12 335-346 2037-2048(3151)
27 PF09759 Atx10homo_assoc: Spin 38.2 1.1E+02 0.0024 28.9 6.8 67 334-401 3-71 (102)
28 KOG1923 Rac1 GTPase effector F 37.8 1.4E+02 0.0031 37.1 9.1 8 747-754 304-311 (830)
29 PHA03169 hypothetical protein; 36.0 2E+02 0.0043 33.1 9.3 6 777-782 210-215 (413)
30 COG5217 BIM1 Microtubule-bindi 35.0 69 0.0015 35.3 5.4 116 330-454 5-139 (342)
31 PF08569 Mo25: Mo25-like; Int 34.4 7.3E+02 0.016 28.2 13.7 127 89-223 152-284 (335)
32 PTZ00429 beta-adaptin; Provisi 34.4 9.6E+02 0.021 30.3 15.9 52 190-245 177-228 (746)
33 KOG3036 Protein involved in ce 33.9 1E+02 0.0022 33.7 6.4 62 326-390 134-196 (293)
34 PHA03264 envelope glycoprotein 30.9 1E+02 0.0022 35.4 6.1 54 737-791 273-327 (416)
35 KOG2759 Vacuolar H+-ATPase V1 30.4 1.3E+02 0.0029 35.0 7.0 123 120-243 286-419 (442)
36 PF05804 KAP: Kinesin-associat 28.6 9.1E+02 0.02 30.4 14.2 57 150-206 491-547 (708)
37 PF00790 VHS: VHS domain; Int 28.6 3.1E+02 0.0067 26.7 8.5 56 193-249 43-98 (140)
38 PTZ00429 beta-adaptin; Provisi 28.4 1.3E+03 0.028 29.2 18.9 144 102-266 51-207 (746)
39 PLN03200 cellulose synthase-in 28.4 1.9E+03 0.042 31.2 22.3 309 41-391 392-723 (2102)
40 PF11841 DUF3361: Domain of un 28.0 3.1E+02 0.0067 28.1 8.4 41 185-226 95-135 (160)
41 KOG1992 Nuclear export recepto 27.1 1.4E+03 0.031 29.3 17.9 232 102-402 498-765 (960)
42 PF04388 Hamartin: Hamartin pr 27.1 3.1E+02 0.0067 34.1 9.9 136 129-310 9-157 (668)
43 COG5369 Uncharacterized conser 26.4 8.8E+02 0.019 29.7 12.7 212 23-247 357-619 (743)
44 PF05924 SAMP: SAMP Motif; In 25.5 37 0.00081 23.0 0.9 11 30-40 1-11 (20)
45 PF13929 mRNA_stabil: mRNA sta 25.3 4.1E+02 0.009 29.7 9.4 55 121-176 115-179 (292)
46 KOG1060 Vesicle coat complex A 25.0 1.9E+02 0.0042 36.3 7.3 50 213-267 409-458 (968)
47 PF04802 SMK-1: Component of I 24.5 3E+02 0.0066 28.8 7.9 133 84-224 35-178 (193)
48 PF08569 Mo25: Mo25-like; Int 23.7 4.4E+02 0.0095 30.0 9.6 97 123-225 94-196 (335)
49 cd00256 VATPase_H VATPase_H, r 22.9 2.4E+02 0.0051 33.2 7.4 244 32-288 79-328 (429)
50 PTZ00269 variant surface glyco 22.6 70 0.0015 37.9 3.1 17 782-798 387-403 (472)
51 PF14500 MMS19_N: Dos2-interac 22.1 7.6E+02 0.016 27.0 10.8 102 126-247 61-170 (262)
52 cd00020 ARM Armadillo/beta-cat 21.1 5.2E+02 0.011 22.8 8.0 110 103-221 8-119 (120)
53 PF06371 Drf_GBD: Diaphanous G 20.5 5.4E+02 0.012 25.5 8.7 77 336-414 83-166 (187)
No 1
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.7e-110 Score=979.77 Aligned_cols=729 Identities=34% Similarity=0.531 Sum_probs=609.1
Q ss_pred CCccCCCCCCCChhhhhhcCCCCCHHHhhCChhHHHHHHhhchhHHHHhhcHHHHHHHHHHhhcCCCcchHhhhcccccc
Q 003408 1 MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPF 80 (822)
Q Consensus 1 MFWkf~g~~~~S~ID~LLdked~TLEeLLdEddlLQE~K~~N~kLIdFL~kpe~lekLI~YI~~e~~ed~e~k~~~Kyp~ 80 (822)
|||+| +....+.++.+|+++.+||++||||++++||||.+|.||++||++|+++++|+.||++++++|.++|++||||+
T Consensus 1 ~f~~~-~~~~~~~~e~~l~~~~~~l~elldeed~~~e~~~~n~~l~~~l~~~e~~~~l~~~I~~e~~~d~D~k~~f~~p~ 79 (838)
T KOG2073|consen 1 MFWDF-DLESSAEIELLLEKESDTLDELLDEEDILQECKLQNSKLLNFLKRPEVLEKLVEYIIEEPEEDADKKTRFKYPN 79 (838)
T ss_pred Ccccc-ccchhHHHHHhcccchhHHHHhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhhhcCCCcccchhhhhcccc
Confidence 99999 67888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccchHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCc
Q 003408 81 VACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI 160 (822)
Q Consensus 81 iAsEILssdv~~I~d~Lvede~lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~ 160 (822)
|+||||||++|.|.++|++|+.+|.+||+||+++.|+|+++++||+|++++|+.||+.++|.||+++.++|+.|++||++
T Consensus 80 i~~Eilt~dv~~I~~~l~~de~ll~~l~s~l~~~~pln~~l~s~F~k~~~~Ll~~k~~~~~~f~k~~~~~v~~~l~hi~~ 159 (838)
T KOG2073|consen 80 ISCEILTSDVWPISEALVEDESLLSLLYSILEHEPPLNPLLSSFFSKINSRLLDRKTEQILEFIKKKDNFVDLFLKHIDI 159 (838)
T ss_pred HHHHHHhcCcHHHHHHHhccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcccccccccchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhc-----CchhHHhhcCCh
Q 003408 161 TSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRS-----APPALAAKISSP 235 (822)
Q Consensus 161 ~aImDlLlrLIt~de~~~~~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~-----spn~L~~~L~S~ 235 (822)
++|||||+|+++|+++.++. +++++||+++++|+||+++++++.++++|+||+++||+|+|+ +|++|+++|+||
T Consensus 160 stlMD~Llkli~~de~~~p~-~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~ 238 (838)
T KOG2073|consen 160 STLMDFLLKLISTDEPESPR-TDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESP 238 (838)
T ss_pred cHHHHHHHHhccccCCCCch-HHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCH
Confidence 99999999999999999875 999999999999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHhcCCCCcceeccceeeeeecccccccccch--h-hhhcccccCCCccccCchhhHhHHHhHHHHHHhhcc
Q 003408 236 NFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGT--Y-YMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDV 312 (822)
Q Consensus 236 e~I~~Ll~~il~~~~~~S~Lvn~lsIli~LL~~~r~n~s~--y-~~~~~~l~~~~~~~~~pe~l~~il~~L~~l~~LL~~ 312 (822)
++|+|||++||++++++|++|++|++||++++++|.+... | ..+.....+ ....+.+.++++|.+||++|++||.+
T Consensus 239 e~ieqLl~~ml~~~~s~s~lVs~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~-~d~~~~~~~l~~~~p~L~dF~~lL~~ 317 (838)
T KOG2073|consen 239 ETIEQLLKIMLEDGTSLSVLVSGIIVLISLLNPRRDTVETNSTTTILSQPPSE-RDPIVLNELLGAMEPRLGDFVQLLLE 317 (838)
T ss_pred HHHHHHHHHHccCCcchhhHHHHHHHHHHhcCcccccccccceeeeecCCccc-cCccchHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999886543 2 322222221 12234567789999999999999999
Q ss_pred CccccccccccCcccCCCcchhhHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhc-
Q 003408 313 SSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE- 391 (822)
Q Consensus 313 ~~~~~~l~Tt~G~l~pPLG~~RLKIvELIa~LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile- 391 (822)
++....++||||.++||||++|||||||||+||||+++.+.++++..+++.+++|+||+|+||||||++|+.||..++.
T Consensus 318 ~~~~~~l~tt~g~l~pPLG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~~ 397 (838)
T KOG2073|consen 318 PEKLDLLETTYGELEPPLGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLSD 397 (838)
T ss_pred CccchhhhhhhhccCCCcchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhhc
Confidence 9988899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------CCChHHHHHHhhhcchHHHHHHHhhccccc--CCCCCCCCCCCCCCCCcchHHHHHHHH-HHHHHhcC---C
Q 003408 392 --------CKNAPLIEHLLHECNLVGKILEAEKNFTLK--DSNKPTVPAEGRLPPRIGNIGHLTRIS-NKLIQLGN---N 457 (822)
Q Consensus 392 --------~~n~~L~~~Lf~~~~Li~rIlea~k~~~~~--~~nk~t~~~~gk~~~R~GYMGHLt~IA-N~Lv~~~~---~ 457 (822)
+.+..++.|++++|+|+.+|++++++.... ..++++..+.|+...|.|||||++||| |.++++.. .
T Consensus 398 ~~~~~~~~s~~~~~v~~~l~~c~l~~~~l~~~e~~e~~~~d~~~~~~~a~g~~~~~~g~~~h~~R~~pn~~vq~~~~~~~ 477 (838)
T KOG2073|consen 398 ETNNDSNISADNEIVDHLLQDCQLSDNILNQWEDSEEDEGDEDDPSDGAFGGKEYRNGPIGHLTRIAPNVGDQLKIKLED 477 (838)
T ss_pred cccccccCCCchHHHHHHHHHhhhhhhhhhcccccchhccccccchhhhhcCCcccCCccceeeecCcchhhhccccccc
Confidence 788999999999999999999998876543 233567778877557999999999999 99999643 6
Q ss_pred cHHHHHHHh--cchhHHHHHHHHhh------hhhhhhhhhhccCC-CCCccCCCCCCCCcccccCCcchHHHHHhhhhhh
Q 003408 458 NSEIHAYLQ--ENSEWNDWQINVLS------KRNTLENIYQWACG-RPTALHDRGRDSDDDDYQNRDYDVAALANNLSQA 528 (822)
Q Consensus 458 ~~~I~~~Lq--~~~~W~~f~~~~L~------k~N~venv~~~~~G-~p~~~~d~~~~sDddd~~d~d~d~~~~~~~l~qa 528 (822)
...|+++|+ .+..|..|...++. ++|.++++|.|.|| ++...+++.+..|++++.+++|++.+.+.++.++
T Consensus 478 ~~~i~~~L~~f~~~~w~~we~~v~~di~~~~~nn~v~~~y~~~~~~~~~~~id~~~~~~e~~~~d~~~~~~~~~~~i~~~ 557 (838)
T KOG2073|consen 478 TNIISTLLEGFPEEPWNNWEHNVLFDIEQQIFNNTVDNSYNDFLGYLTSNFIDLTRFNDEEEKADRDYDVMGHLDNIADH 557 (838)
T ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCccchhhhhhhhhccHHHHhhhccccchhhccccccchhhhhHhhhh
Confidence 788999998 45789999888876 99999999999999 5999999999999988899999999999999998
Q ss_pred -hhhccccCCchhhhccccccCCCccccCCCccceeeec---cccccccCCCcccc-cCCcccccccccccccccCCCCC
Q 003408 529 -FRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVISS---LRLGDDQESGSLFT-NSNWFAFEDDRVSHERAAGSLAS 603 (822)
Q Consensus 529 -f~y~~~~~~d~~e~~~~~~~~~ed~~~~~~s~~~~~s~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 603 (822)
|+|+++.+..+.|..+...+ +..|||||+++|++++ +||||++..+++++ |++|++|+|++....++....
T Consensus 558 ~F~~~~de~~~~~e~~~~~~~--~~q~~~dE~~~~~l~~~~~~~lgd~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-- 633 (838)
T KOG2073|consen 558 NFSINIDENSPNAEDLEVEDR--LIQYFDDEKAETVLGAMGQLRLGDEDSEDSLKTWNGEELAGQDDKFDINDSEQDS-- 633 (838)
T ss_pred hccccccccCchhhhhhhhcc--ccccccccchheeecccccccccchhhhhhhhccccccccccccccCCCcccccc--
Confidence 99999999999999988888 8999999999999999 99999999999998 999999999977777644432
Q ss_pred CCCCccccCC-------CCCCCCCceeeccC-CCccccccCCCCCCCCCCCCCCCCCCCCcccCCCC--CCCCCcceecc
Q 003408 604 PSPNIEETGV-------TNGGGHDQVTVGED-DLDDTATSAAVPVSKSEDSDVGKLPNDSVETGSCT--TEKPPTWVEWR 673 (822)
Q Consensus 604 ~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 673 (822)
.....++.. ...++++..++|+- +...+.++-.. +...... ....+. .+...|+. ++..|.|+.|.
T Consensus 634 -~~~~~D~e~~~t~n~~~~~~d~~~~~~~~~~~~~~~e~~~~~-~~~~~~~-~~~~~~-~~~~~p~~~~~~~~p~p~~~~ 709 (838)
T KOG2073|consen 634 -YSGFFDVEEWETYNADEDNDDDTSSVIGEGGESPTGEPSWGE-DSDENGS-ADSTDG-TDEFTPDHPETENSPSPSKPP 709 (838)
T ss_pred -cccccccccccCCCCccccccchhhhhhhcCCCCCCcccccc-CCCCCcc-cccCCC-ccccCCCCCcccCCCCCCCCc
Confidence 111111111 12223345566664 33323233222 2222111 111111 11122222 25668999999
Q ss_pred cCCCCCCCCCCCCCcccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCccccccCCccCCCCCCCCCCCCCCCC
Q 003408 674 ERPDSSNPSSADEPVSIPNGELQDQGGNGDVDVPEPSPSSSNTEDANITTTGELSKSIDENPSSKPSEPSESGSP 748 (822)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~p~~~~~~~~p 748 (822)
+++....|..+ .|++.+++.++.++........ +..+..+|+.. ++|...+..++..-.++|.|+..
T Consensus 710 ~~~~~v~~~~~-----~~~~d~~s~~~~~n~~~~~~~~-s~~~~~~p~~~--a~~~~~~~~~e~~~~~~~~~~~~ 776 (838)
T KOG2073|consen 710 GSAEGVSPKAS-----EPNGDVSSLGEQDNELTDSDEQ-SEGDETIPKRP--AVPDLTGKDTENAVVRSTAPDSE 776 (838)
T ss_pred cchhccCCccc-----ccccccccccccCCCCCccccc-cccccCCCCCc--cccccccccccccccccCCCccc
Confidence 99887777652 3488888744443332222111 11112222222 56666777766666666655533
No 2
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=100.00 E-value=1.6e-72 Score=638.97 Aligned_cols=345 Identities=35% Similarity=0.567 Sum_probs=300.5
Q ss_pred HHHHHhcCchhHHHHHHHhhHHHHHHHHhhCchHHHHHHHHHhcccccccccchhhhHHHhhhHHHHHHHHhcCCCCCHH
Q 003408 129 VICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPE 208 (822)
Q Consensus 129 v~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~~aImDlLlrLIt~de~~~~~~~~il~WL~eq~LI~~Ll~~L~~s~s~e 208 (822)
+++||.||+.+|++||+++|++|++|++||++++|||||+|||++|++. .++++++||.+++||++||++|+++++++
T Consensus 1 n~~Ll~~k~~e~l~Fik~~~~~v~~llkHI~~~~ImDlLLklIs~d~~~--~~~~ilewL~~q~LI~~Li~~L~p~~~~~ 78 (475)
T PF04499_consen 1 NECLLDRKTEEMLEFIKSQPNFVDNLLKHIDTPAIMDLLLKLISTDKPE--SPTGILEWLAEQNLIPRLIDLLSPSYSSD 78 (475)
T ss_pred CchhhhcCHHHHHHHHHhCccHHHHHHHhcCCcHHHHHHHHHHccCccc--chHHHHHHHHHhCHHHHHHHHhCCCCCHH
Confidence 3689999999999999999999999999999999999999999999865 47899999999999999999999999999
Q ss_pred HHhhHHHHHHHHHhcC------------chhHHhhcCChHHHHHHHHHHhcCCCCcceeccceeeeeecccccccccchh
Q 003408 209 VHANAAETLCSITRSA------------PPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTY 276 (822)
Q Consensus 209 v~~NaaeiL~~IIr~s------------pn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~lsIli~LL~~~r~n~s~y 276 (822)
+|+|||++||+||+++ |++|+++|+|+++|++|+++||.... .++|++|++|+|+|| |+++++|
T Consensus 79 ~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~-~s~lvn~v~IlieLI---Rknnsdy 154 (475)
T PF04499_consen 79 VQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG-GSSLVNGVSILIELI---RKNNSDY 154 (475)
T ss_pred HHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC-cchHHHHHHHHHHHH---Hhccccc
Confidence 9999999999999853 68999999999999999999997544 799999999999999 6788999
Q ss_pred hhh-cccccCCCccccCchhhHhH----HHhHHHHHHhhccCccccccccccCcccCCCcchhhHHHHHHHHHHhcCcHH
Q 003408 277 YMF-NRQLTHGSTVTVNPETVEGM----LGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEA 351 (822)
Q Consensus 277 ~~~-~~~l~~~~~~~~~pe~l~~i----l~~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIvELIa~LL~~nn~~ 351 (822)
+.. .............|.+++.| .+||++|+++|..++....+.||+|.+.+|||++|||||||||+||||+|+.
T Consensus 155 ~~~~~~~~~~~~p~~rdpi~l~~lL~~~~~~l~~f~~lL~~~~~~~~l~Tt~G~l~~PLG~~RlkI~ELiAeLLhcsNm~ 234 (475)
T PF04499_consen 155 DEQLYTTIESHPPSERDPIYLGTLLKAFSPRLPDFHKLLLNPPKKPPLETTFGVLIPPLGFERLKICELIAELLHCSNMS 234 (475)
T ss_pred chhhccccccCCCCccchhhHHHHHHHHHHhHHHHHHHHhchhhccccccCCCCCCCCcchHHHHHHHHHHHHHhCCCcc
Confidence 853 11111122234456666555 4799999999999988899999999999999999999999999999997644
Q ss_pred --------------------------------------------------------------------------------
Q 003408 352 -------------------------------------------------------------------------------- 351 (822)
Q Consensus 352 -------------------------------------------------------------------------------- 351 (822)
T Consensus 235 LlN~~~~~~~~~~rd~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (475)
T PF04499_consen 235 LLNEPKGEEIVYERDGERERLLEQLQDALNDLEIDDEDIDDNSMDDESDSSEDSRELEVSNDSSDSEEEDESDEDSEDEE 314 (475)
T ss_pred ccCCccccchhcCcHHHHHHHHHHHHhhhhcccCCccccccccccccccCccccccccccccccccccccCCcccccccc
Confidence
Q ss_pred -----------------------HHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHh-----cCCChHHHHHHhh
Q 003408 352 -----------------------AEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCL-----ECKNAPLIEHLLH 403 (822)
Q Consensus 352 -----------------------i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~il-----e~~n~~L~~~Lf~ 403 (822)
+.++|+++|++++||+|||+||||||||++||+||++|| .+++++|+.|||+
T Consensus 315 ~~~~~~~~~~~~~~~~~pvvGd~~k~~L~~~~il~~iLdLFfkypwNNFLH~~V~diIqqiln~~~~~~~n~~L~~~Lf~ 394 (475)
T PF04499_consen 315 EEESSDSEETEEKLRSNPVVGDYLKIELIELGILPTILDLFFKYPWNNFLHNVVEDIIQQILNGPMDESYNSFLVKHLFE 394 (475)
T ss_pred ccccccccccchhccCCCCcHHHHHHHHHHCCcHHHHHHHHhcCcchhHHHHHHHHHHHHHhCCCCcccccHHHHHHHHh
Confidence 124578899999999999999999999999999999999 5678999999999
Q ss_pred hcchHHHHHHHhhcccccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhcCCcHH--HHHHHh---cchhHHHHHHHH
Q 003408 404 ECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSE--IHAYLQ---ENSEWNDWQINV 478 (822)
Q Consensus 404 ~~~Li~rIlea~k~~~~~~~nk~t~~~~gk~~~R~GYMGHLt~IAN~Lv~~~~~~~~--I~~~Lq---~~~~W~~f~~~~ 478 (822)
+|+|++||+++++.+.. +..+.++|+|||||||+|||+|+++++.++. |...++ .+++|.+|++++
T Consensus 395 ~~~l~~~Il~~~~~~~~---------~~~~~~~RlGYMGHLtlIAn~ivk~~~~~~~~li~~~i~~~~~~~~W~~fv~~~ 465 (475)
T PF04499_consen 395 DCDLTDRILEGWKENDE---------SQEKPGPRLGYMGHLTLIANEIVKFSEKYPEELISPDIQEELQNEEWEEFVEGV 465 (475)
T ss_pred hccHHHHHHHhhhhchh---------hcccCCCCcCchhHHHHHHHHHHHHHhcCcHHHHHHHHhhhhhhhhhHHHHHCh
Confidence 99999999999986642 1223479999999999999999999876554 555555 368999999999
Q ss_pred hhhhhhhhhh
Q 003408 479 LSKRNTLENI 488 (822)
Q Consensus 479 L~k~N~venv 488 (822)
|+++|+.+++
T Consensus 466 L~et~~~~n~ 475 (475)
T PF04499_consen 466 LAETNEKENA 475 (475)
T ss_pred HHHHHhhcCC
Confidence 9999988763
No 3
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=2.1e-08 Score=120.76 Aligned_cols=359 Identities=17% Similarity=0.200 Sum_probs=178.7
Q ss_pred HHhhCChhHHHHHHh--hchhHHHHhhc--------------------HHHHHHHHHHhhcCCCcchHhhhccccccchh
Q 003408 26 EELLDEDDIIQECKA--LNGRLINFLRE--------------------RAQVEQLIQYIVVEAPEDAEKRRTFKFPFVAC 83 (822)
Q Consensus 26 EeLLdEddlLQE~K~--~N~kLIdFL~k--------------------pe~lekLI~YI~~e~~ed~e~k~~~Kyp~iAs 83 (822)
+=++.++++++.+-. .+..|+|||+| .+.+.+|++.+--.-..+. +-+=...-|
T Consensus 141 ~f~k~~~~~v~~~l~hi~~stlMD~Llkli~~de~~~p~~~Viq~l~d~~li~kll~ll~ps~~~~~----qsna~~~L~ 216 (838)
T KOG2073|consen 141 EFIKKKDNFVDLFLKHIDISTLMDFLLKLISTDEPESPRTDVIQWLNDQELIPKLLELLNPSKDPDV----QSNAGQTLC 216 (838)
T ss_pred HHHHhhhHHHHHHHHHcCccHHHHHHHHhccccCCCCchHHHHHHHhhHHHHHHHHHHhCCccccch----hHHHHHHHH
Confidence 345556666655533 35667777654 3444555554443322221 111222233
Q ss_pred hhhcc-----chHHHHHHhhcCHHHHHHHHh-hcCCCCCCChhhhhhHHHHHHHHHhcCchhHH--HHHHHhhH------
Q 003408 84 EIFTC-----EVDIILKTLVEDEELMNLLFS-FLEPKDSHSTLLAGYFSKVVICLLLRKTVPLM--HYIKAHQE------ 149 (822)
Q Consensus 84 EILss-----dv~~I~d~Lvede~lL~~L~s-fL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l--~fL~~~~~------ 149 (822)
+|.+. .-..+..+|.. ++.+.+|+. +|+...+++.+++|.+..|-.+.-+|-+.+.. .+|..|+-
T Consensus 217 ~iv~~s~~~~gPn~L~~qL~s-~e~ieqLl~~ml~~~~s~s~lVs~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~~d~~ 295 (838)
T KOG2073|consen 217 AIVRLSRNQPGPNPLTKQLES-PETIEQLLKIMLEDGTSLSVLVSGIIVLISLLNPRRDTVETNSTTTILSQPPSERDPI 295 (838)
T ss_pred HHHhcccccCCCCHHHHhhcC-HHHHHHHHHHHccCCcchhhHHHHHHHHHHhcCcccccccccceeeeecCCccccCcc
Confidence 33333 34446676664 456666655 77888889999988886666555555555553 23443321
Q ss_pred ----HHHHHHHhhCchHHHHHHHHHhcccccccccchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCc
Q 003408 150 ----IMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAP 225 (822)
Q Consensus 150 ----ivd~LlkHI~~~aImDlLlrLIt~de~~~~~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~sp 225 (822)
+|..|..| +.||+--|...... ++++.-+..|-|.-...+ .-+++++.++...+.
T Consensus 296 ~~~~~l~~~~p~-----L~dF~~lL~~~~~~---------------~~l~tt~g~l~pPLG~~R-lki~eliaelL~~~~ 354 (838)
T KOG2073|consen 296 VLNELLGAMEPR-----LGDFVQLLLEPEKL---------------DLLETTYGELEPPLGFER-LKIVELIAELLHCSN 354 (838)
T ss_pred chHHHHHHHHHH-----HHHHHHHhcCCccc---------------hhhhhhhhccCCCcchHH-HHHHHHHHHHhccCc
Confidence 23333333 34444333332221 122333333434333333 246778888887776
Q ss_pred hhHHhhcCChHHHHHHHHHHhcCCCC--cceecc-ceeeeeecccccccccchhhhhcccccCCCccccCchhhHhHHHh
Q 003408 226 PALAAKISSPNFIGRLFRHALENSRP--KSVLVN-SLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGR 302 (822)
Q Consensus 226 n~L~~~L~S~e~I~~Ll~~il~~~~~--~S~Lvn-~lsIli~LL~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il~~ 302 (822)
-.+.+.++...+++++++..++..-. ....+. +|..+.+ + -++- . . ....+-+.+.+++..
T Consensus 355 ~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~--~---~~~~------~----~-~~s~~~~~v~~~l~~ 418 (838)
T KOG2073|consen 355 MTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLS--D---ETNN------D----S-NISADNEIVDHLLQD 418 (838)
T ss_pred HHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhh--c---cccc------c----c-cCCCchHHHHHHHHH
Confidence 67777787888887777766654311 000000 1111111 0 0000 0 0 001112223333221
Q ss_pred HHHHHHhhccC---ccc--ccccc---ccCcccCCCcchhhHHHHHHHHHHhcCcHHHH---HHHHHhhhHHHHHHHHhh
Q 003408 303 LGDLLKLLDVS---SEE--SSLLT---TYGKLQPPLGKHRLKIVEFISVLLTVGSEAAE---KELIRHGAVRRILDLFFE 371 (822)
Q Consensus 303 L~~l~~LL~~~---~~~--~~l~T---t~G~l~pPLG~~RLKIvELIa~LL~~nn~~i~---~~Li~~~ii~~LLdLFFk 371 (822)
..-.-.+|..- ... ..-.= ..|....-=|. +..+++.....+. .++-..++++++|++|..
T Consensus 419 c~l~~~~l~~~e~~e~~~~d~~~~~~~a~g~~~~~~g~--------~~h~~R~~pn~~vq~~~~~~~~~~i~~~L~~f~~ 490 (838)
T KOG2073|consen 419 CQLSDNILNQWEDSEEDEGDEDDPSDGAFGGKEYRNGP--------IGHLTRIAPNVGDQLKIKLEDTNIISTLLEGFPE 490 (838)
T ss_pred hhhhhhhhhcccccchhccccccchhhhhcCCcccCCc--------cceeeecCcchhhhccccccchHHHHHHHHHHhh
Confidence 11000112110 000 00000 11111101111 1112232211111 234467899999999999
Q ss_pred cCCCchhHHHHHHHHHHHhcC-----CChHHHHHHhhhcchHHHHHHHhhcccccCCCCCCCCCCCCCCCCcchHHHHHH
Q 003408 372 YPYNNFLHHHVENIILSCLEC-----KNAPLIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTR 446 (822)
Q Consensus 372 YpwNNfLH~~Ve~II~~ile~-----~n~~L~~~Lf~~~~Li~rIlea~k~~~~~~~nk~t~~~~gk~~~R~GYMGHLt~ 446 (822)
++||||+|+++++|+++++++ ++.++.+ ++..+++.++-+... .+...|.|||||+++
T Consensus 491 ~~w~~we~~v~~di~~~~~nn~v~~~y~~~~~~-------~~~~~id~~~~~~e~----------~~~d~~~~~~~~~~~ 553 (838)
T KOG2073|consen 491 EPWNNWEHNVLFDIEQQIFNNTVDNSYNDFLGY-------LTSNFIDLTRFNDEE----------EKADRDYDVMGHLDN 553 (838)
T ss_pred hhhhhhHHHHHHHHHHHhhcCccchhhhhhhhh-------ccHHHHhhhccccch----------hhccccccchhhhhH
Confidence 999999999999999999975 4444444 455667766644321 123579999999999
Q ss_pred HHHHH
Q 003408 447 ISNKL 451 (822)
Q Consensus 447 IAN~L 451 (822)
||+.+
T Consensus 554 i~~~~ 558 (838)
T KOG2073|consen 554 IADHN 558 (838)
T ss_pred hhhhh
Confidence 99976
No 4
>KOG3546 consensus Collagens (type XV) [Extracellular structures]
Probab=96.82 E-value=0.0018 Score=75.13 Aligned_cols=19 Identities=37% Similarity=0.784 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 003408 737 SKPSEPSESGSPSEPAESG 755 (822)
Q Consensus 737 ~~p~~~~~~~~p~~p~~p~ 755 (822)
+-|.+||+||-||.||+||
T Consensus 432 gppgppgppg~pg~pg~pg 450 (1167)
T KOG3546|consen 432 GPPGPPGPPGVPGLPGEPG 450 (1167)
T ss_pred CCCCCCCCCCCCCCCCCCC
Confidence 3344555555555555554
No 5
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.30 E-value=0.23 Score=59.79 Aligned_cols=36 Identities=19% Similarity=0.438 Sum_probs=19.1
Q ss_pred hHHHhh-----hHHHHHHHHhcCCCCCHHHHhh-HHHHHHHHHhc
Q 003408 185 MQWIED-----TNVLEMIVDKFSSSDSPEVHAN-AAETLCSITRS 223 (822)
Q Consensus 185 l~WL~e-----q~LI~~Ll~~L~~s~s~ev~~N-aaeiL~~IIr~ 223 (822)
+.|+++ .+++..++.+|..+. +.++ -..++.+|||+
T Consensus 174 VSwvn~Fgvegl~ll~~~Lkrl~dsk---~~~~~~~k~~~eiIrC 215 (1102)
T KOG1924|consen 174 VSWVNKFGVEGLGLLLDVLKRLRDSK---VGSKLDIKNLQEIIRC 215 (1102)
T ss_pred cHHHHHhhhhhHHHHHHHHHHHHhhh---hhhhhHHHHHHHHHHH
Confidence 457766 355666666665443 2222 33455566653
No 6
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=92.87 E-value=2.9 Score=49.36 Aligned_cols=210 Identities=17% Similarity=0.241 Sum_probs=126.3
Q ss_pred HHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCchHHHHHHHHHhcc-cccccccchhhh
Q 003408 107 LFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGA-DEHMYTNFTESM 185 (822)
Q Consensus 107 L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~~aImDlLlrLIt~-de~~~~~~~~il 185 (822)
||+.|... +.-...+-++|+..++......-+ +..+..++...|.| ..+.|-.+.++.|.. ... ..+..
T Consensus 43 lf~~L~~~---~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~----~~~~~ 112 (503)
T PF10508_consen 43 LFDCLNTS---NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARH----SEGAA 112 (503)
T ss_pred HHHHHhhc---ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcC----CHHHH
Confidence 66666644 333445667888888876544333 66777788888888 557888886665432 222 24568
Q ss_pred HHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceeccceeeeeec
Q 003408 186 QWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISL 265 (822)
Q Consensus 186 ~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~lsIli~L 265 (822)
+++.+.+++..++.+|.. .+.++...|+.+|+.|.+..+ . .+.|.++..+..|-+.+-+.+. .+-...+.++..+
T Consensus 113 ~~~~~~~l~~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~~-~-~~~l~~~~~~~~L~~l~~~~~~--~vR~Rv~el~v~i 187 (503)
T PF10508_consen 113 QLLVDNELLPLIIQCLRD-PDLSVAKAAIKALKKLASHPE-G-LEQLFDSNLLSKLKSLMSQSSD--IVRCRVYELLVEI 187 (503)
T ss_pred HHhcCccHHHHHHHHHcC-CcHHHHHHHHHHHHHHhCCch-h-HHHHhCcchHHHHHHHHhccCH--HHHHHHHHHHHHH
Confidence 899999999999998844 456677788899998886532 2 2334444445555443433111 1111111111111
Q ss_pred ccccccccchhhhhcccccCCCccccCchhhHhHHH--hHHHHHHhhccCccccccccccCcccCCCcchhhHHHHHHHH
Q 003408 266 LDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISV 343 (822)
Q Consensus 266 L~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il~--~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIvELIa~ 343 (822)
..++++....+.. -+..+++.|.... -..|+.++|++..
T Consensus 188 -----------------------~~~S~~~~~~~~~sgll~~ll~eL~~dD----------------iLvqlnalell~~ 228 (503)
T PF10508_consen 188 -----------------------ASHSPEAAEAVVNSGLLDLLLKELDSDD----------------ILVQLNALELLSE 228 (503)
T ss_pred -----------------------HhcCHHHHHHHHhccHHHHHHHHhcCcc----------------HHHHHHHHHHHHH
Confidence 1123333333322 3444455444311 0357889999999
Q ss_pred HHhcCcHHHHHHHHHhhhHHHHHHHHhhc
Q 003408 344 LLTVGSEAAEKELIRHGAVRRILDLFFEY 372 (822)
Q Consensus 344 LL~~nn~~i~~~Li~~~ii~~LLdLFFkY 372 (822)
|-.+ .. -.+.|.+.|+++.|.+++..-
T Consensus 229 La~~-~~-g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 229 LAET-PH-GLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred HHcC-hh-HHHHHHhCCHHHHHHHHHhcc
Confidence 9983 33 357889999999999998776
No 7
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=91.94 E-value=1.2 Score=52.45 Aligned_cols=130 Identities=12% Similarity=0.248 Sum_probs=95.4
Q ss_pred ccchHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhc--CchhHHHHHHHhhHHHHHHHHhhC-----
Q 003408 87 TCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLR--KTVPLMHYIKAHQEIMARLVDLIG----- 159 (822)
Q Consensus 87 ssdv~~I~d~Lvede~lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~r--k~~e~l~fL~~~~~ivd~LlkHI~----- 159 (822)
.-....+++.|-..+.++++|+.-++.. .++-+|.|++. +.+ .+..++++|.. ++++.+|+..+.
T Consensus 6 ~~k~~e~l~Fik~~~~~v~~llkHI~~~-----~ImDlLLklIs--~d~~~~~~~ilewL~~-q~LI~~Li~~L~p~~~~ 77 (475)
T PF04499_consen 6 DRKTEEMLEFIKSQPNFVDNLLKHIDTP-----AIMDLLLKLIS--TDKPESPTGILEWLAE-QNLIPRLIDLLSPSYSS 77 (475)
T ss_pred hcCHHHHHHHHHhCccHHHHHHHhcCCc-----HHHHHHHHHHc--cCcccchHHHHHHHHH-hCHHHHHHHHhCCCCCH
Confidence 3345566777777888888888888654 57788888887 444 46688999988 589999999995
Q ss_pred --chHHHHHHHHHhcccccc------cccchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcC
Q 003408 160 --ITSIMEVLIRLIGADEHM------YTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSA 224 (822)
Q Consensus 160 --~~aImDlLlrLIt~de~~------~~~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~s 224 (822)
..+++|+|.-||+.-... ...+.....-|.++..|.+|++.+-.........|+..++.++||+.
T Consensus 78 ~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 78 DVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 357889999998864311 11124566778899999999998765333455568889999999854
No 8
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=91.24 E-value=0.59 Score=56.57 Aligned_cols=8 Identities=38% Similarity=0.596 Sum_probs=3.7
Q ss_pred cchHHHHH
Q 003408 515 DYDVAALA 522 (822)
Q Consensus 515 d~d~~~~~ 522 (822)
+.|+..+.
T Consensus 453 ~id~~~li 460 (1102)
T KOG1924|consen 453 DIDLTELI 460 (1102)
T ss_pred cCcHHHHH
Confidence 44554443
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=88.60 E-value=24 Score=43.65 Aligned_cols=78 Identities=14% Similarity=0.219 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCCChHHHHHHhhhcchHHHHH
Q 003408 333 HRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKIL 412 (822)
Q Consensus 333 ~RLKIvELIa~LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile~~n~~L~~~Lf~~~~Li~rIl 412 (822)
.-|.+|-++.++.. ++.....|.+.|++..+++||-.+.=..=+=.|+.-++.+.+- ...-..++.++.+++..++
T Consensus 551 l~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~--h~~tr~~ll~~~~~~~yli 626 (708)
T PF05804_consen 551 LLLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLF--HEETREVLLKETEIPAYLI 626 (708)
T ss_pred HHHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHc--ChHHHHHHHhccchHHHHH
Confidence 44555555554432 4555677889999999999998887765554444444444442 2333445556666666666
Q ss_pred HH
Q 003408 413 EA 414 (822)
Q Consensus 413 ea 414 (822)
+-
T Consensus 627 dL 628 (708)
T PF05804_consen 627 DL 628 (708)
T ss_pred HH
Confidence 64
No 10
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.95 E-value=20 Score=44.38 Aligned_cols=72 Identities=22% Similarity=0.209 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCCCCHHHHhhHH-HHHHHHHhcCchhHHhhcC-ChHHHHHHHHHHhcCCCCcceecc--ceeeeeeccc
Q 003408 192 NVLEMIVDKFSSSDSPEVHANAA-ETLCSITRSAPPALAAKIS-SPNFIGRLFRHALENSRPKSVLVN--SLSICISLLD 267 (822)
Q Consensus 192 ~LI~~Ll~~L~~s~s~ev~~Naa-eiL~~IIr~spn~L~~~L~-S~e~I~~Ll~~il~~~~~~S~Lvn--~lsIli~LL~ 267 (822)
-=|.+|++.|..+. ++..|.+ .+||++++-.++ +++|+ -....++||+++=+.+.....||. ++.++..||+
T Consensus 166 ~gIS~lmdlL~Dsr--E~IRNe~iLlL~eL~k~n~~--IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK 241 (970)
T KOG0946|consen 166 MGISKLMDLLRDSR--EPIRNEAILLLSELVKDNSS--IQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLK 241 (970)
T ss_pred hhHHHHHHHHhhhh--hhhchhHHHHHHHHHccCch--HHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh
Confidence 34678888887665 4455655 788999986553 22222 256678999988765533333332 5667777773
No 11
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=79.95 E-value=1.4e+02 Score=35.55 Aligned_cols=284 Identities=18% Similarity=0.220 Sum_probs=154.5
Q ss_pred hhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCc------hHHHHHHHHH
Q 003408 97 LVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI------TSIMEVLIRL 170 (822)
Q Consensus 97 Lvede~lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~------~aImDlLlrL 170 (822)
++.+.+++..+..-|..+. .-.|..-++++..|...+. -++-|.. ++++..|.+.+.. ..+.+++..+
T Consensus 114 ~~~~~~l~~~i~~~L~~~d---~~Va~~A~~~L~~l~~~~~--~~~~l~~-~~~~~~L~~l~~~~~~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 114 LLVDNELLPLIIQCLRDPD---LSVAKAAIKALKKLASHPE--GLEQLFD-SNLLSKLKSLMSQSSDIVRCRVYELLVEI 187 (503)
T ss_pred HhcCccHHHHHHHHHcCCc---HHHHHHHHHHHHHHhCCch--hHHHHhC-cchHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 3445556777777675432 3456677788888876542 2233321 1223333222222 3466777776
Q ss_pred hcccccccccchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCC
Q 003408 171 IGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSR 250 (822)
Q Consensus 171 It~de~~~~~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~ 250 (822)
.... ...++...+.++++.+++.|.. .|.-++.||.++|.++.. .+ .-+.+|.+...+.+|.+.+.....
T Consensus 188 ~~~S-------~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~-~~-~g~~yL~~~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 188 ASHS-------PEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAE-TP-HGLQYLEQQGIFDKLSNLLQDSEE 257 (503)
T ss_pred HhcC-------HHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHc-Ch-hHHHHHHhCCHHHHHHHHHhcccc
Confidence 4433 2356677778899999999988 778889999999999998 33 346788888889999887765432
Q ss_pred CcceeccceeeeeecccccccccchhhhhcccccCCCccccCchhhHhHHHhHHHHHHhhc---cCccccccccccCccc
Q 003408 251 PKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLD---VSSEESSLLTTYGKLQ 327 (822)
Q Consensus 251 ~~S~Lvn~lsIli~LL~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il~~L~~l~~LL~---~~~~~~~l~Tt~G~l~ 327 (822)
.. ...++- +...+. .+ +......|..+ +...++|+..|. ...+.
T Consensus 258 dp--~~~~~~-l~g~~~----------f~------g~la~~~~~~v---~~~~p~~~~~l~~~~~s~d~----------- 304 (503)
T PF10508_consen 258 DP--RLSSLL-LPGRMK----------FF------GNLARVSPQEV---LELYPAFLERLFSMLESQDP----------- 304 (503)
T ss_pred CC--cccchh-hhhHHH----------HH------HHHHhcChHHH---HHHHHHHHHHHHHHhCCCCh-----------
Confidence 11 001100 001110 00 00111122222 122233332221 01000
Q ss_pred CCCcchhhHHHHHHHHHHhcCcHHHHHHH-HH-hhhHHHHHHHHhhcCCCch--hHHHHHHHHHHHhcCCCh-------H
Q 003408 328 PPLGKHRLKIVEFISVLLTVGSEAAEKEL-IR-HGAVRRILDLFFEYPYNNF--LHHHVENIILSCLECKNA-------P 396 (822)
Q Consensus 328 pPLG~~RLKIvELIa~LL~~nn~~i~~~L-i~-~~ii~~LLdLFFkYpwNNf--LH~~Ve~II~~ile~~n~-------~ 396 (822)
..|.-.++-++.+=. ..+.. +.| .. .+.+..++..++.+-.+-- ++....+++..+|..... .
T Consensus 305 ----~~~~~A~dtlg~igs-t~~G~-~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~ 378 (503)
T PF10508_consen 305 ----TIREVAFDTLGQIGS-TVEGK-QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILS 378 (503)
T ss_pred ----hHHHHHHHHHHHHhC-CHHHH-HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 123334555554433 23332 233 33 4588999999999999875 788888889999865433 3
Q ss_pred HHHHHhh---hcchHHHHHHHhhcccccCCCCCCCCCCCCCCCCcchHHHHHHHHH
Q 003408 397 LIEHLLH---ECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISN 449 (822)
Q Consensus 397 L~~~Lf~---~~~Li~rIlea~k~~~~~~~nk~t~~~~gk~~~R~GYMGHLt~IAN 449 (822)
+....|+ .......|+..-+ ++++. .|...++.|+-||.
T Consensus 379 ~~~~w~~~~~~~~~~~~l~~~~~-----------qPF~e---lr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 379 ITESWYESLSGSPLSNLLMSLLK-----------QPFPE---LRCAAYRLLQALAA 420 (503)
T ss_pred HHHHHHHHhcCCchHHHHHHHhc-----------CCchH---HHHHHHHHHHHHhc
Confidence 3444444 2222224444332 12332 67777777777765
No 12
>PF05616 Neisseria_TspB: Neisseria meningitidis TspB protein; InterPro: IPR008708 This family consists mainly of Neisseria meningitidis TspB virulence factor proteins.
Probab=65.26 E-value=31 Score=40.48 Aligned_cols=11 Identities=9% Similarity=0.287 Sum_probs=6.5
Q ss_pred CcHHHHHHHhc
Q 003408 457 NNSEIHAYLQE 467 (822)
Q Consensus 457 ~~~~I~~~Lq~ 467 (822)
..++++++++.
T Consensus 163 r~~e~~~lm~~ 173 (502)
T PF05616_consen 163 RFPEVKQLMES 173 (502)
T ss_pred cCHHHHHHHHH
Confidence 34566666653
No 13
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=63.72 E-value=1.7e+02 Score=33.78 Aligned_cols=126 Identities=17% Similarity=0.260 Sum_probs=86.5
Q ss_pred hhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhC---chHHHHHHHHHhcc
Q 003408 97 LVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIG---ITSIMEVLIRLIGA 173 (822)
Q Consensus 97 Lvede~lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~---~~aImDlLlrLIt~ 173 (822)
|+++..++.-|-..|.+..--.+.+.++-.-|+..++..-+. .+..|... .+++.||+.|. +.+-.|+|..|-.+
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT-~~~~l~e~-Gl~~~~L~~i~~~~i~~s~e~l~~lP~~ 178 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPT-SFSILQEA-GLIDAFLDAITAKGILPSSEVLTSLPNV 178 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCc-hhHHHHHc-CChHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 444466777777777776667777777777888888877765 33445443 46677777775 66667887777665
Q ss_pred cccccccchhhhHHHhhhHHHHHHHHhcCCC-C-----CHHHHhhHHHHHHHHHhcCc
Q 003408 174 DEHMYTNFTESMQWIEDTNVLEMIVDKFSSS-D-----SPEVHANAAETLCSITRSAP 225 (822)
Q Consensus 174 de~~~~~~~~il~WL~eq~LI~~Ll~~L~~s-~-----s~ev~~NaaeiL~~IIr~sp 225 (822)
-....-|.. -++-+.+.+.+.++++.|... | ..+.-.+++.-+.+++|..|
T Consensus 179 l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p 235 (379)
T PF06025_consen 179 LSAICLNNR-GLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHP 235 (379)
T ss_pred HhHHhcCHH-HHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCH
Confidence 544333333 356677789999999988653 2 22666788889999999876
No 14
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=62.79 E-value=15 Score=43.48 Aligned_cols=9 Identities=33% Similarity=0.600 Sum_probs=5.1
Q ss_pred CCCCCccCC
Q 003408 493 CGRPTALHD 501 (822)
Q Consensus 493 ~G~p~~~~d 501 (822)
-|-|.++-.
T Consensus 165 ~gE~~PLKT 173 (574)
T PF07462_consen 165 IGEPFPLKT 173 (574)
T ss_pred cCCCccccc
Confidence 466666544
No 15
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=61.38 E-value=2.5e+02 Score=30.61 Aligned_cols=146 Identities=18% Similarity=0.261 Sum_probs=79.6
Q ss_pred HHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCch-hHHhhcCChHHHHHHHHHHhcCCCCcceeccceeeeee
Q 003408 186 QWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPP-ALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICIS 264 (822)
Q Consensus 186 ~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn-~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~lsIli~ 264 (822)
+...+-+.+..+.+.|+.. ++.++.. .|+++...+.+ .-..++ +.+|.++++.++...-...+-..|+..+..
T Consensus 48 ~~Ir~~Ggi~lI~~lL~~p-~~~vr~~---AL~aL~Nls~~~en~~~I--k~~i~~Vc~~~~s~~lns~~Q~agLrlL~n 121 (254)
T PF04826_consen 48 DIIRDLGGISLIGSLLNDP-NPSVREK---ALNALNNLSVNDENQEQI--KMYIPQVCEETVSSPLNSEVQLAGLRLLTN 121 (254)
T ss_pred HHHHHcCCHHHHHHHcCCC-ChHHHHH---HHHHHHhcCCChhhHHHH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHc
Confidence 3445556667676666554 4555543 45555554432 111111 345566665554432111122344444443
Q ss_pred cccccccccchhhhhcccccCCCccccCchhhHhHHHhHHHHHHhhccCccccccccccCcccCCCcchhhHHHHHHHHH
Q 003408 265 LLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVL 344 (822)
Q Consensus 265 LL~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il~~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIvELIa~L 344 (822)
|- +....-.-+..++.+|+.||.... +.+|.++++++..|
T Consensus 122 Lt------------------------v~~~~~~~l~~~i~~ll~LL~~G~----------------~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 122 LT------------------------VTNDYHHMLANYIPDLLSLLSSGS----------------EKTKVQVLKVLVNL 161 (254)
T ss_pred cC------------------------CCcchhhhHHhhHHHHHHHHHcCC----------------hHHHHHHHHHHHHh
Confidence 31 001111123457788888886321 24677788765554
Q ss_pred HhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhH
Q 003408 345 LTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLH 379 (822)
Q Consensus 345 L~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH 379 (822)
=. ++....+|+..+++..++.||-+-.-+..|-
T Consensus 162 S~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~ 194 (254)
T PF04826_consen 162 SE--NPDMTRELLSAQVLSSFLSLFNSSESKENLL 194 (254)
T ss_pred cc--CHHHHHHHHhccchhHHHHHHccCCccHHHH
Confidence 33 5666789999999999999998876666553
No 16
>PHA02030 hypothetical protein
Probab=53.07 E-value=30 Score=38.26 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=8.5
Q ss_pred cccCCccCCCCCCCCCCCC
Q 003408 726 ELSKSIDENPSSKPSEPSE 744 (822)
Q Consensus 726 ~~p~s~~~~~~~~p~~~~~ 744 (822)
++|.......+.-|+-||-
T Consensus 283 avP~aaa~~A~a~p~vP~v 301 (336)
T PHA02030 283 AVPAAAAAVAQAAPSVPQV 301 (336)
T ss_pred CCCcchhhcccccccCCCC
Confidence 4555444444444444433
No 17
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=52.35 E-value=2.1e+02 Score=33.21 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=59.5
Q ss_pred HHHHHHHhhcCCCC---CCChhhhhhHHHHHHHHHhcCchhHH-HHHHHhh--HHHHHHHHhhCchHHHHHHHHHhcccc
Q 003408 102 ELMNLLFSFLEPKD---SHSTLLAGYFSKVVICLLLRKTVPLM-HYIKAHQ--EIMARLVDLIGITSIMEVLIRLIGADE 175 (822)
Q Consensus 102 ~lL~~L~sfL~~~~---~ln~llAgyFsKIv~~LL~rk~~e~l-~fL~~~~--~ivd~LlkHI~~~aImDlLlrLIt~de 175 (822)
..|..|.+++.... .+++-.-.-+.+.+..=+-|.-..+- ..+-... -+.+--..| ..-|.++|++++..-.
T Consensus 45 ~~L~el~~~v~~~~~~~~l~e~~~~~i~~Mi~~NifR~lP~~~~~~~~~~~d~~~~e~~WpH--L~~vY~il~~~i~~~~ 122 (409)
T PF01603_consen 45 QTLNELVDYVSNSRIQGILTEPVYPEIFNMISANIFRPLPPIPNPSFDPDDDEPFLEPSWPH--LQLVYEILLRFIESPP 122 (409)
T ss_dssp HHHHHHHHHHCSSS--SSS-TTSHHHHHHHHHHHH-S-----SS--S-GGG------TTHHH--HHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhccCCCCCcccccCCccccccccccccHh--HHHHHHHHHHHHHCcc
Confidence 46788888887765 34444444444444444444311111 1111111 155666677 4678999999998754
Q ss_pred cccccchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHh
Q 003408 176 HMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITR 222 (822)
Q Consensus 176 ~~~~~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr 222 (822)
... .-. .-.++++.+|++.|++....|+. .+..+|..|+.
T Consensus 123 ~~~-----~~~-~i~~~fi~~Ll~l~~S~D~rER~-~lk~~l~~iy~ 162 (409)
T PF01603_consen 123 FDP-----AKK-YIDQKFIKKLLELFDSPDPRERD-YLKTILHRIYG 162 (409)
T ss_dssp --C-----CTT-TS-HHHHHHHHHTTTSSTHHHHH-HHHHHHHHHHH
T ss_pred ccH-----HHH-HcCHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHHH
Confidence 321 111 23678999999999887766663 45556655554
No 18
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=50.44 E-value=2.8e+02 Score=32.51 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhcccccccccchhhhHHHhhhHHHHHHHHhcCCCCCHHH
Q 003408 161 TSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEV 209 (822)
Q Consensus 161 ~aImDlLlrLIt~de~~~~~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev 209 (822)
..+.||+||.+...+-+ ..+..=+.++.+|-+|+++|++...-++
T Consensus 150 qlvye~~Lrf~~sp~~d----~~vaK~yid~~FvlkLLdLFdSEDpRER 194 (457)
T KOG2085|consen 150 QLVYEFLLRFLESPDFD----PSVAKKYIDQKFVLKLLDLFDSEDPRER 194 (457)
T ss_pred HHHHHHHHHHHhCcccC----HHHHHHHhhHHHHHHHHHHhcCCChHHH
Confidence 35788899998765543 2344455689999999999998887776
No 19
>PHA02030 hypothetical protein
Probab=49.27 E-value=52 Score=36.45 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=23.7
Q ss_pred cccCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003408 726 ELSKSIDENPSSKPSEPSESGSPSEPAESGTPSEPAESGTPSEPAESGTPSEPSESVDG 784 (822)
Q Consensus 726 ~~p~s~~~~~~~~p~~~~~~~~p~~p~~p~~p~ep~~~~~~~~~~~~~~~~~~~~~~~~ 784 (822)
..|.-.....+..|.-|+-||.|+-|.-|-.| ..+.|+.|.-|.-|+.||-|..|
T Consensus 280 ~apavP~aaa~~A~a~p~vP~vP~~~~lP~Vp----~v~~paaP~vP~vP~~P~vPa~p 334 (336)
T PHA02030 280 AAPAVPAAAAAVAQAAPSVPQVPNVAVLPDVP----QVAPVAAPAAPEVPAVPVVPAAP 334 (336)
T ss_pred cCCCCCcchhhcccccccCCCCCCcccCCCCC----cccccccccCCCCCCCCCCCCCC
Confidence 44444444444445555555554433333333 22334444444444444444443
No 20
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.49 E-value=5.9e+02 Score=30.77 Aligned_cols=234 Identities=18% Similarity=0.175 Sum_probs=115.4
Q ss_pred HHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcC-chhHHHHHHHhhHHHHHHHHhhCchHHHHHHHHHhcccccccccch
Q 003408 104 MNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRK-TVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFT 182 (822)
Q Consensus 104 L~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk-~~e~l~fL~~~~~ivd~LlkHI~~~aImDlLlrLIt~de~~~~~~~ 182 (822)
|.-|..+|....++..+ --..-++.+|.+.| +..-+.-++.-=..+..+++|-+.--+.|-.--|--.... ..
T Consensus 196 l~pLl~~l~~~~~~~~l--Rn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg----~n 269 (514)
T KOG0166|consen 196 LDPLLRLLNKSDKLSML--RNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG----SN 269 (514)
T ss_pred hHHHHHHhccccchHHH--HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC----Ch
Confidence 44455555554431111 11223555566555 4444444544334556666666666666654444322221 12
Q ss_pred hhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHh--cCchhHHhhcCChHHHHHHHHHHhcCCCCcceecccee
Q 003408 183 ESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITR--SAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLS 260 (822)
Q Consensus 183 ~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr--~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~ls 260 (822)
+.++..-+.+++++|+++|......-+ .--|++|.. .|.+..++.+.-... +.
T Consensus 270 e~iq~vi~~gvv~~LV~lL~~~~~~v~----~PaLRaiGNIvtG~d~QTq~vi~~~~---------------------L~ 324 (514)
T KOG0166|consen 270 EKIQMVIDAGVVPRLVDLLGHSSPKVV----TPALRAIGNIVTGSDEQTQVVINSGA---------------------LP 324 (514)
T ss_pred HHHHHHHHccchHHHHHHHcCCCcccc----cHHHhhccceeeccHHHHHHHHhcCh---------------------HH
Confidence 346667788899999998865443222 112333322 222222221111111 22
Q ss_pred eeeeccccccccc--chhhhhcccccCCCccccCchhhHhHHH--hHHHHHHhhccCccccccccccCcccCCCcchhhH
Q 003408 261 ICISLLDPKRLTL--GTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLK 336 (822)
Q Consensus 261 Ili~LL~~~r~n~--s~y~~~~~~l~~~~~~~~~pe~l~~il~--~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLK 336 (822)
++..|+....+.. ..-.-..+++ ...+++.+.+++. -++.++.+|.... -..|-.
T Consensus 325 ~l~~ll~~s~~~~ikkEAcW~iSNI-----tAG~~~qiqaVida~l~p~Li~~l~~~e----------------f~~rKE 383 (514)
T KOG0166|consen 325 VLSNLLSSSPKESIKKEACWTISNI-----TAGNQEQIQAVIDANLIPVLINLLQTAE----------------FDIRKE 383 (514)
T ss_pred HHHHHhccCcchhHHHHHHHHHHHh-----hcCCHHHHHHHHHcccHHHHHHHHhccc----------------hHHHHH
Confidence 2222221000000 0000000111 1234444554433 3445555654321 135667
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhc
Q 003408 337 IVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE 391 (822)
Q Consensus 337 IvELIa~LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile 391 (822)
.+--|..+...+++.-...|++.|+++-+-+|+ ..+= .-+-.++.+.+.-|+.
T Consensus 384 AawaIsN~ts~g~~~qi~yLv~~giI~plcdlL-~~~D-~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 384 AAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLL-TCPD-VKIILVALDGLENILK 436 (514)
T ss_pred HHHHHHhhcccCCHHHHHHHHHcCCchhhhhcc-cCCC-hHHHHHHHHHHHHHHH
Confidence 888888888888888888999999999999998 3333 3335666666666663
No 21
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=45.66 E-value=56 Score=36.74 Aligned_cols=53 Identities=17% Similarity=0.306 Sum_probs=42.4
Q ss_pred hhhhhhcCCCCCHHHhhCChhHHHHHHhhchhHHHHhhcHHHHHHHHHHhhcCC
Q 003408 13 PVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEA 66 (822)
Q Consensus 13 ~ID~LLdked~TLEeLLdEddlLQE~K~~N~kLIdFL~kpe~lekLI~YI~~e~ 66 (822)
-++.|++...-+.+-.|.--.++-||+. ..-|-.++....++++-..|+-...
T Consensus 127 ~~~~lv~~~~~~~~iaL~cg~mlrEcir-he~LakiiL~s~~~~~FF~~vq~p~ 179 (342)
T KOG1566|consen 127 ILDNLVKGYENTPEIALTCGNMLRECIR-HEFLAKIILESTNFEKFFLYVQLPN 179 (342)
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHh-hHHHHHHHHcchhHHHHHHHHhccc
Confidence 4667776532278888999999999997 7788889988899999999987653
No 22
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=45.34 E-value=49 Score=25.12 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=31.0
Q ss_pred hHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHh
Q 003408 185 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITR 222 (822)
Q Consensus 185 l~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr 222 (822)
.+.+.+.+.|+.|+++|. +.+.+++.+|+-.|..|.+
T Consensus 5 ~~~i~~~g~i~~Lv~ll~-~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 5 KQAIVEAGGIPPLVQLLK-SPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHTTHHHHHHHHTT-SSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHc-CCCHHHHHHHHHHHHHHhC
Confidence 345678899999999998 7889999999999988753
No 23
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=44.42 E-value=1.5e+02 Score=35.19 Aligned_cols=12 Identities=33% Similarity=0.805 Sum_probs=7.7
Q ss_pred hHhHHHhHHHHH
Q 003408 296 VEGMLGRLGDLL 307 (822)
Q Consensus 296 l~~il~~L~~l~ 307 (822)
+...+-|++.|+
T Consensus 138 lGqaiGRiGnF~ 149 (460)
T PRK13108 138 LAQAIGRLGNYF 149 (460)
T ss_pred HHHHHHHHHHHh
Confidence 444566777776
No 24
>PHA03247 large tegument protein UL36; Provisional
Probab=41.31 E-value=65 Score=44.95 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=7.8
Q ss_pred ccchhhhHHHhh
Q 003408 179 TNFTESMQWIED 190 (822)
Q Consensus 179 ~~~~~il~WL~e 190 (822)
......++||+.
T Consensus 1664 ELDvqAVeWL~q 1675 (3151)
T PHA03247 1664 ELDVAAVDWLEH 1675 (3151)
T ss_pred ccCHHHHHHHHH
Confidence 344567788865
No 25
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.18 E-value=5e+02 Score=32.40 Aligned_cols=140 Identities=20% Similarity=0.290 Sum_probs=70.6
Q ss_pred HHHHHHhhccCccccccccccCcccCCCcchhhHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHH
Q 003408 303 LGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHV 382 (822)
Q Consensus 303 L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIvELIa~LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~V 382 (822)
|+.|..+|..+. .+..+-.+|.++ ||||=.|..+.+.-. .+-+ .-++++++. ||++| +--+..+.
T Consensus 130 Lp~L~~~L~s~d-~n~~EgA~~AL~--------KIcEDsa~~lds~~~---~rpl-~~mipkfl~-f~~h~-spkiRs~A 194 (885)
T KOG2023|consen 130 LPQLCELLDSPD-YNTCEGAFGALQ--------KICEDSAQFLDSDVL---TRPL-NIMIPKFLQ-FFKHP-SPKIRSHA 194 (885)
T ss_pred HHHHHHHhcCCc-ccccchhHHHHH--------HHHhhhHHHHhhhcc---cCch-HHhHHHHHH-HHhCC-ChhHHHHH
Confidence 445666665432 122222334444 799888888875321 1111 012334433 55666 55566666
Q ss_pred HHHHHHHhcCCC-------hHHHHHHhhh------------cchHHHHHHHhhcccccCCCCCCCCCCCCCCCCcchHHH
Q 003408 383 ENIILSCLECKN-------APLIEHLLHE------------CNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGH 443 (822)
Q Consensus 383 e~II~~ile~~n-------~~L~~~Lf~~------------~~Li~rIlea~k~~~~~~~nk~t~~~~gk~~~R~GYMGH 443 (822)
..||.+.+=..+ +.++.+||.- |+-+-.+++-.- --.|-|
T Consensus 195 ~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~---------------------dkl~ph 253 (885)
T KOG2023|consen 195 VGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP---------------------DKLVPH 253 (885)
T ss_pred HhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH---------------------Hhcccc
Confidence 667766553322 3445555552 222223333210 124667
Q ss_pred HHHHHHHHHHhcCC-cHHHHHHHhcchhHHHHHHHHhh
Q 003408 444 LTRISNKLIQLGNN-NSEIHAYLQENSEWNDWQINVLS 480 (822)
Q Consensus 444 Lt~IAN~Lv~~~~~-~~~I~~~Lq~~~~W~~f~~~~L~ 480 (822)
|-.|-++..+.... ++.+ .|+.-+-|-.|.+..+.
T Consensus 254 l~~IveyML~~tqd~dE~V--ALEACEFwla~aeqpi~ 289 (885)
T KOG2023|consen 254 LDNIVEYMLQRTQDVDENV--ALEACEFWLALAEQPIC 289 (885)
T ss_pred hHHHHHHHHHHccCcchhH--HHHHHHHHHHHhcCcCc
Confidence 87788887775432 2222 23444679998876653
No 26
>PHA03247 large tegument protein UL36; Provisional
Probab=39.42 E-value=81 Score=44.14 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHh
Q 003408 335 LKIVEFISVLLT 346 (822)
Q Consensus 335 LKIvELIa~LL~ 346 (822)
--+.|+|+.||.
T Consensus 2037 ~AaaEiYaaLiA 2048 (3151)
T PHA03247 2037 AAAAELYAALVA 2048 (3151)
T ss_pred HHHHHHHHHHHH
Confidence 345555555553
No 27
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=38.24 E-value=1.1e+02 Score=28.86 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCC--ChHHHHHH
Q 003408 334 RLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECK--NAPLIEHL 401 (822)
Q Consensus 334 RLKIvELIa~LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile~~--n~~L~~~L 401 (822)
|.-+|++|+.|.+- +..+...+.+.+-++.+|+..--=++|=|+-....=+|..++++. |..++..|
T Consensus 3 K~~lvrlianl~~~-~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYK-NKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 66799999999976 466778888999999999998777888888888888888888753 34444444
No 28
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=37.80 E-value=1.4e+02 Score=37.12 Aligned_cols=8 Identities=25% Similarity=0.260 Sum_probs=3.4
Q ss_pred CCCCCCCC
Q 003408 747 SPSEPAES 754 (822)
Q Consensus 747 ~p~~p~~p 754 (822)
.|.+|-.|
T Consensus 304 ~~~pPppp 311 (830)
T KOG1923|consen 304 RCSPPPPP 311 (830)
T ss_pred CCCCCCCC
Confidence 44444444
No 29
>PHA03169 hypothetical protein; Provisional
Probab=36.02 E-value=2e+02 Score=33.07 Aligned_cols=6 Identities=50% Similarity=0.783 Sum_probs=2.4
Q ss_pred CCCCCC
Q 003408 777 EPSESV 782 (822)
Q Consensus 777 ~~~~~~ 782 (822)
+||++.
T Consensus 210 ~~ge~~ 215 (413)
T PHA03169 210 EPGEPQ 215 (413)
T ss_pred CCCCCC
Confidence 344443
No 30
>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]
Probab=35.04 E-value=69 Score=35.30 Aligned_cols=116 Identities=12% Similarity=0.064 Sum_probs=66.5
Q ss_pred CcchhhHHHHHHHHHHhcCcHHHH--------HHHHHhhhHHHHHHHHhhcCCCchh-HHHHHHHHHHHhcCCC--hH-H
Q 003408 330 LGKHRLKIVEFISVLLTVGSEAAE--------KELIRHGAVRRILDLFFEYPYNNFL-HHHVENIILSCLECKN--AP-L 397 (822)
Q Consensus 330 LG~~RLKIvELIa~LL~~nn~~i~--------~~Li~~~ii~~LLdLFFkYpwNNfL-H~~Ve~II~~ile~~n--~~-L 397 (822)
+|..|-.++-++.++++.+-..|+ +.+.+ .++.-|=+--.+|||++-+ |.-=..|+|+||-.+- .. +
T Consensus 5 l~esr~ell~w~N~v~~L~l~rIEdcg~g~am~qI~d-siY~Dlp~~~V~f~~~aey~~~~n~kILq~~Fs~~Gidk~v~ 83 (342)
T COG5217 5 LVESREELLFWENVVVRLDLQRIEDCGEGFAMQQIHD-SIYVDLPDSLVRFPWIAEYKHPGNGKILQLLFSDYGIDKAVL 83 (342)
T ss_pred hhhhHHHHHHHHHHHhhcCceehhhhccchhHHHHHH-HHhccCcHhhccccchhheecCCchhHHHHHHHhcCcchhhh
Confidence 455566666666677766554332 11222 3333444556789999988 6667899999996431 11 1
Q ss_pred HHHH-----hhhcchHHHHHHHhhcccccCCCCCCCCCCCCCCCCcchHHH-HHH-HHHHHHHh
Q 003408 398 IEHL-----LHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGH-LTR-ISNKLIQL 454 (822)
Q Consensus 398 ~~~L-----f~~~~Li~rIlea~k~~~~~~~nk~t~~~~gk~~~R~GYMGH-Lt~-IAN~Lv~~ 454 (822)
+.-| ...-.|++.+.+.|-+..-. ..++ ...|++|||- .|| .++.+...
T Consensus 84 v~~lvrck~qdnLeflQwlk~hWvr~~~~-------~~yd-~~arr~~r~p~~tr~~~~~~rs~ 139 (342)
T COG5217 84 VLVLVRCKLQDNLEFLQWLKDHWVRNLGH-------ISYD-RNARRLGRTPKSTRELIEWIRSL 139 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-------CccC-hhHHhcCCCcchHHHHHhhhhhc
Confidence 2112 22335777888888654221 1233 2468899976 555 56655544
No 31
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=34.43 E-value=7.3e+02 Score=28.20 Aligned_cols=127 Identities=13% Similarity=0.234 Sum_probs=77.2
Q ss_pred chHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHh-hHHHHHHHHhh--CchHHHH
Q 003408 89 EVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAH-QEIMARLVDLI--GITSIME 165 (822)
Q Consensus 89 dv~~I~d~Lvede~lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~~~-~~ivd~LlkHI--~~~aImD 165 (822)
-...+...++.++ .+.++|.+++... =-.|+---.++..|+.+...-.-+||..+ ..|+..+-+.| ++...--
T Consensus 152 k~e~l~~~iL~~~-~f~~ff~~~~~~~---Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 152 KHESLAKIILYSE-CFWKFFKYVQLPN---FDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp TSHHHHHHHHTSG-GGGGHHHHTTSSS---HHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred hhHHHHHHHhCcH-HHHHHHHHhcCCc---cHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 3444555555544 4455677766432 12344445788888888777777888764 44666555544 3344444
Q ss_pred HHHHHhcc---cccccccchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhc
Q 003408 166 VLIRLIGA---DEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRS 223 (822)
Q Consensus 166 lLlrLIt~---de~~~~~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~ 223 (822)
--+||++. |.. +..-+..|..+.+-+..++.+|.. .+..++.-|..+++=.+..
T Consensus 228 qslkLL~ellldr~---n~~vm~~yi~~~~nLkl~M~lL~d-~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 228 QSLKLLGELLLDRS---NFNVMTRYISSPENLKLMMNLLRD-KSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHSGG---GHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHchh---HHHHHHHHHCCHHHHHHHHHHhcC-cchhhhHHHHHHHHHHHhC
Confidence 44555542 433 445567899888888888777754 5566888889999888864
No 32
>PTZ00429 beta-adaptin; Provisional
Probab=34.41 E-value=9.6e+02 Score=30.34 Aligned_cols=52 Identities=21% Similarity=0.431 Sum_probs=34.6
Q ss_pred hhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHH
Q 003408 190 DTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHA 245 (822)
Q Consensus 190 eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~i 245 (822)
+.+++++|.++| ...++.+..||.-.|++|...+|..+. + ....+.+|+..+
T Consensus 177 ~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l-~~~~~~~Ll~~L 228 (746)
T PTZ00429 177 QQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGSEKIE--S-SNEWVNRLVYHL 228 (746)
T ss_pred ccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCchhhH--H-HHHHHHHHHHHh
Confidence 345667777755 467788999999999999877665431 1 244455555544
No 33
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=33.87 E-value=1e+02 Score=33.75 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=48.7
Q ss_pred ccCCCcchhhHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchh-HHHHHHHHHHHh
Q 003408 326 LQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFL-HHHVENIILSCL 390 (822)
Q Consensus 326 l~pPLG~~RLKIvELIa~LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfL-H~~Ve~II~~il 390 (822)
...||-.-||.-+-.|++|++.++..+..-|..++|++.|+...- .-.-| ..+...|++.|+
T Consensus 134 ~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime---~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 134 KSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIME---SGSELSKTVATFILQKIL 196 (293)
T ss_pred cCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh---cccHHHHHHHHHHHHHHh
Confidence 367999999999999999999999999999999999999997653 23344 333345555555
No 34
>PHA03264 envelope glycoprotein D; Provisional
Probab=30.93 E-value=1e+02 Score=35.38 Aligned_cols=54 Identities=7% Similarity=0.148 Sum_probs=0.0
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003408 737 SKPSEPSESG-SPSEPAESGTPSEPAESGTPSEPAESGTPSEPSESVDGNHPSSDP 791 (822)
Q Consensus 737 ~~p~~~~~~~-~p~~p~~p~~p~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (822)
++|.+||+++ ++++-+-|-++|-+|.-++-+.||.-+....+|-.++| +|..++
T Consensus 273 ~sp~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~p~ 327 (416)
T PHA03264 273 GSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEP-KPGPPR 327 (416)
T ss_pred CCCCCCCCCCCccCcCCCcccCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCCC
No 35
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=30.41 E-value=1.3e+02 Score=35.02 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=75.2
Q ss_pred hhhhhHHHHHHHHHhcC--chhHHHHHHHhhHHHHHHHHhhCch--HHHHHHHHHhcccc-ccccc--chhhhHHHhh--
Q 003408 120 LLAGYFSKVVICLLLRK--TVPLMHYIKAHQEIMARLVDLIGIT--SIMEVLIRLIGADE-HMYTN--FTESMQWIED-- 190 (822)
Q Consensus 120 llAgyFsKIv~~LL~rk--~~e~l~fL~~~~~ivd~LlkHI~~~--aImDlLlrLIt~de-~~~~~--~~~il~WL~e-- 190 (822)
++-+-..|.+..|-.|| .+++.+.|....+-+.+-.+|+.+. -..|+....+--.. +.... ++.+-. |++
T Consensus 286 mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~r-lnenn 364 (442)
T KOG2759|consen 286 MVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADR-LNENN 364 (442)
T ss_pred HHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHH-Hhhcc
Confidence 34445567788888777 3466666666666677777777654 23343333322110 00000 011222 322
Q ss_pred hHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCch--hHHhhcCChHHHHHHHH
Q 003408 191 TNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPP--ALAAKISSPNFIGRLFR 243 (822)
Q Consensus 191 q~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn--~L~~~L~S~e~I~~Ll~ 243 (822)
..++..|+..|..+.++-+-+-||.=+-+.+|..|. .++.++--.+.|.+|++
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Lln 419 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLN 419 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhc
Confidence 567888888898888888888888889999998873 56667777776666653
No 36
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=28.65 E-value=9.1e+02 Score=30.39 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=31.3
Q ss_pred HHHHHHHhhCchHHHHHHHHHhcccccccccchhhhHHHhhhHHHHHHHHhcCCCCC
Q 003408 150 IMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDS 206 (822)
Q Consensus 150 ivd~LlkHI~~~aImDlLlrLIt~de~~~~~~~~il~WL~eq~LI~~Ll~~L~~s~s 206 (822)
++..|++.+....--|+++-.+++=-.......+.-+.+.+.+|++-|.+.|.+...
T Consensus 491 ~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~ 547 (708)
T PF05804_consen 491 FIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS 547 (708)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC
Confidence 555555555554445555555543211100012334456678899999999987643
No 37
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=28.64 E-value=3.1e+02 Score=26.72 Aligned_cols=56 Identities=14% Similarity=0.301 Sum_probs=44.1
Q ss_pred HHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCC
Q 003408 193 VLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENS 249 (822)
Q Consensus 193 LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~ 249 (822)
.+..|-.+|.. .++.++..|-.+|..++..+...+..++.+.+++..|.+.+-...
T Consensus 43 a~~~l~krl~~-~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~ 98 (140)
T PF00790_consen 43 AARALRKRLKH-GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKK 98 (140)
T ss_dssp HHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCC
Confidence 34445455554 778888999999999999888889999999999999887666543
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=28.43 E-value=1.3e+03 Score=29.20 Aligned_cols=144 Identities=13% Similarity=0.108 Sum_probs=81.3
Q ss_pred HHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCch-------hHHHHHHHhhHH----HHHHHHhh--CchHHHHHHH
Q 003408 102 ELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTV-------PLMHYIKAHQEI----MARLVDLI--GITSIMEVLI 168 (822)
Q Consensus 102 ~lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~-------e~l~fL~~~~~i----vd~LlkHI--~~~aImDlLl 168 (822)
+.|.++...+-.-. -.+.+|.-|+.++-..+-. -+..|.+.+|+. +..|.|-+ .++.|-=+-+
T Consensus 51 ~alKkvIa~mt~G~----DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLAL 126 (746)
T PTZ00429 51 AAVKRIIANMTMGR----DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAV 126 (746)
T ss_pred HHHHHHHHHHHCCC----CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34566655543322 1445666666543322211 123455556763 45566665 3566777777
Q ss_pred HHhcccccccccchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcC
Q 003408 169 RLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALEN 248 (822)
Q Consensus 169 rLIt~de~~~~~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~ 248 (822)
|.+++-... .+++.+ +.-+...+ ...++.+-.+|+--+..|.+..|+- +....++.+|.+ ++.+
T Consensus 127 RtLs~Ir~~-----~i~e~l-----~~~lkk~L-~D~~pYVRKtAalai~Kly~~~pel----v~~~~~~~~L~~-LL~D 190 (746)
T PTZ00429 127 RTMMCIRVS-----SVLEYT-----LEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDMQL----FYQQDFKKDLVE-LLND 190 (746)
T ss_pred HHHHcCCcH-----HHHHHH-----HHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCccc----ccccchHHHHHH-HhcC
Confidence 777764331 233332 22333333 4566888889888888888887741 223456666666 5665
Q ss_pred CCCcceeccceeeeeecc
Q 003408 249 SRPKSVLVNSLSICISLL 266 (822)
Q Consensus 249 ~~~~S~Lvn~lsIli~LL 266 (822)
.. -+++.|++.++.++-
T Consensus 191 ~d-p~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 191 NN-PVVASNAAAIVCEVN 207 (746)
T ss_pred CC-ccHHHHHHHHHHHHH
Confidence 43 467888888777764
No 39
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=28.37 E-value=1.9e+03 Score=31.20 Aligned_cols=309 Identities=17% Similarity=0.138 Sum_probs=155.6
Q ss_pred hchhHHHHhhcHHHHHHHHHHhhcCCCcchHhhhccccccchhhhhccchHHHHHHhhcCHHHHHHHHhhcCCCCCCChh
Q 003408 41 LNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTL 120 (822)
Q Consensus 41 ~N~kLIdFL~kpe~lekLI~YI~~e~~ed~e~k~~~Kyp~iAsEILssdv~~I~d~Lvede~lL~~L~sfL~~~~~ln~l 120 (822)
.|..|-..|...+.++-||+.+.....+-.. ..-.+--.|+.........++... .+..|.++|.+... ...
T Consensus 392 gN~~l~~~L~~~daik~LV~LL~~~~~evQ~------~Av~aL~~L~~~~~e~~~aIi~~g-gIp~LV~LL~s~s~-~iQ 463 (2102)
T PLN03200 392 GNAYLSRKLNHAEAKKVLVGLITMATADVQE------ELIRALSSLCCGKGGLWEALGGRE-GVQLLISLLGLSSE-QQQ 463 (2102)
T ss_pred CChHHHHHHHhccchhhhhhhhccCCHHHHH------HHHHHHHHHhCCCHHHHHHHHHcC-cHHHHHHHHcCCCH-HHH
Confidence 3555555565556677788877765321111 111222335555555566666554 47889999987542 211
Q ss_pred hhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCc--hHHHH----HHHHHhcccccccccchhhhHHHhhhHHH
Q 003408 121 LAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI--TSIME----VLIRLIGADEHMYTNFTESMQWIEDTNVL 194 (822)
Q Consensus 121 lAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~--~aImD----lLlrLIt~de~~~~~~~~il~WL~eq~LI 194 (822)
. +=++++..|-......- ..|.. .+.+..|++.+.. ..+.+ .|..|.. .. ......+.+.+.|
T Consensus 464 ~--~A~~~L~nLa~~ndenr-~aIie-aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~-~~------~qir~iV~~aGAI 532 (2102)
T PLN03200 464 E--YAVALLAILTDEVDESK-WAITA-AGGIPPLVQLLETGSQKAKEDSATVLWNLCC-HS------EDIRACVESAGAV 532 (2102)
T ss_pred H--HHHHHHHHHHcCCHHHH-HHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC-Cc------HHHHHHHHHCCCH
Confidence 1 22345555543333222 22332 2455555555533 22222 2222222 11 1122334566888
Q ss_pred HHHHHhcCCCCCHHHHhhHHHHHHHHHhcCch----hHHhhcCChH--HH---HHHHHHHhcCCCC-----c-ceeccce
Q 003408 195 EMIVDKFSSSDSPEVHANAAETLCSITRSAPP----ALAAKISSPN--FI---GRLFRHALENSRP-----K-SVLVNSL 259 (822)
Q Consensus 195 ~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn----~L~~~L~S~e--~I---~~Ll~~il~~~~~-----~-S~Lvn~l 259 (822)
+.|++.|... +...+.+|+..|+.|++.+.+ +|..-|.++. .. -+.+.+++.-... . ..-..++
T Consensus 533 ppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL 611 (2102)
T PLN03200 533 PALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDAL 611 (2102)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccH
Confidence 8999998665 678899999999999876543 2333233322 11 1122222221000 0 0012456
Q ss_pred eeeeecccccccccchhhhhcccccCCCccccCchhhHhHH--HhHHHHHHhhccCccccccccccCcccCCCcchhhHH
Q 003408 260 SICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGML--GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKI 337 (822)
Q Consensus 260 sIli~LL~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il--~~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKI 337 (822)
..+..|++.. +...|..--.-+ ...+..++.....++ .-+..++++|..... ..|-..
T Consensus 612 ~~Lv~LL~sg--s~~ikk~Aa~iL--snL~a~~~d~~~avv~agaIpPLV~LLss~~~----------------~v~keA 671 (2102)
T PLN03200 612 RTLIQLLSSS--KEETQEKAASVL--ADIFSSRQDLCESLATDEIINPCIKLLTNNTE----------------AVATQS 671 (2102)
T ss_pred HHHHHHHcCC--CHHHHHHHHHHH--HHHhcCChHHHHHHHHcCCHHHHHHHHhcCCh----------------HHHHHH
Confidence 6667776531 111111000000 001111222222221 134455666653211 145567
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhc
Q 003408 338 VEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE 391 (822)
Q Consensus 338 vELIa~LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile 391 (822)
+.-+..|....+..-...+++.|+++-+++|.-. ++.-+..+....+..++.
T Consensus 672 A~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~--~d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 672 ARALAALSRSIKENRKVSYAAEDAIKPLIKLAKS--SSIEVAEQAVCALANLLS 723 (2102)
T ss_pred HHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhC--CChHHHHHHHHHHHHHHc
Confidence 7777788876665444567899999999999843 567777777777777775
No 40
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=27.98 E-value=3.1e+02 Score=28.05 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=31.3
Q ss_pred hHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCch
Q 003408 185 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPP 226 (822)
Q Consensus 185 l~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn 226 (822)
.++..++=-+++|+..|.. .+.+++.|+--+|.++...+++
T Consensus 95 y~~V~~evt~~~Li~hLq~-~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 95 YQLVEQEVTLESLIRHLQV-SNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHhccCCHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCh
Confidence 3455554457788888866 7789999999999999988764
No 41
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.13 E-value=1.4e+03 Score=29.27 Aligned_cols=232 Identities=18% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCch---------hHHHHHHHhhHHHHHHHHhh------CchHHHHH
Q 003408 102 ELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTV---------PLMHYIKAHQEIMARLVDLI------GITSIMEV 166 (822)
Q Consensus 102 ~lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~---------e~l~fL~~~~~ivd~LlkHI------~~~aImDl 166 (822)
.++..|..||+.+. .++-+|=++.++.++..|.. .+-.|+.. ++.+|++|+ ++.-+|-.
T Consensus 498 ~~~p~li~~L~a~s---~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~---ll~nLf~a~s~p~~~EneylmKa 571 (960)
T KOG1992|consen 498 ALLPRLIRFLEAES---RVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEI---LLTNLFKALSLPGKAENEYLMKA 571 (960)
T ss_pred HHHHHHHHhccCcc---hHHHHHHHHHHHhccccccCccccccchhhcchHHHH---HHHHHHHhccCCcccccHHHHHH
Q ss_pred HHHHhcccccccccchhhhHHHhh--hHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHh----cCchhHHhhcCChHHHHH
Q 003408 167 LIRLIGADEHMYTNFTESMQWIED--TNVLEMIVDKFSSSDSPEVHANAAETLCSITR----SAPPALAAKISSPNFIGR 240 (822)
Q Consensus 167 LlrLIt~de~~~~~~~~il~WL~e--q~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr----~spn~L~~~L~S~e~I~~ 240 (822)
++|+|+..+.. ++.+.-. .+|.+-+-..-.+..++.-..-..+.+|.+|| .+|..+ ....+.
T Consensus 572 ImRii~i~~~~------i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~v------s~~e~a 639 (960)
T KOG1992|consen 572 IMRIISILQSA------IIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAV------SSLEEA 639 (960)
T ss_pred HHHHHHhCHHh------hhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHH------HHHHHH
Q ss_pred HH---HHHhcCCCCcceeccceeeeeecccccccccchhhhhcccccCCCccccCchhhHhHHHhHHHHHHhhccCcccc
Q 003408 241 LF---RHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEES 317 (822)
Q Consensus 241 Ll---~~il~~~~~~S~Lvn~lsIli~LL~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il~~L~~l~~LL~~~~~~~ 317 (822)
|| ..+|... +..++|+.=.++.+|-.....
T Consensus 640 L~p~fq~Il~eD----------------------------------------------I~EfiPYvfQlla~lve~~~~- 672 (960)
T KOG1992|consen 640 LFPVFQTILSED----------------------------------------------IQEFIPYVFQLLAVLVEHSSG- 672 (960)
T ss_pred HHHHHHHHHHHH----------------------------------------------HHHHHHHHHHHHHHHHHhcCC-
Q ss_pred ccccccCcccCCCcchhh--------HHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHH
Q 003408 318 SLLTTYGKLQPPLGKHRL--------KIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSC 389 (822)
Q Consensus 318 ~l~Tt~G~l~pPLG~~RL--------KIvELIa~LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~i 389 (822)
.+.-+|-.+.|||-..+| .+|+|+.++|+++...+. ..+-+.-+|-.|-+------..++=|.++..|
T Consensus 673 ~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~----~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i 748 (960)
T KOG1992|consen 673 TIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVE----AADKLSGILGIFQKLIASKANDHHGFYLLNTI 748 (960)
T ss_pred CCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhc----ccccchhHHHHHHHHhcCcccchhHHHHHHHH
Q ss_pred hcCCChH----HHHHHh
Q 003408 390 LECKNAP----LIEHLL 402 (822)
Q Consensus 390 le~~n~~----L~~~Lf 402 (822)
+...+.. .++++|
T Consensus 749 ~~~~~~~~~~py~k~i~ 765 (960)
T KOG1992|consen 749 IESIPPNELAPYMKQIF 765 (960)
T ss_pred HhcCCHhhhhHHHHHHH
No 42
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=27.13 E-value=3.1e+02 Score=34.08 Aligned_cols=136 Identities=23% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHhcCchhHHHHHHHh----------hHHHHHHHHhh---CchHHHHHHHHHhcccccccccchhhhHHHhhhHHHH
Q 003408 129 VICLLLRKTVPLMHYIKAH----------QEIMARLVDLI---GITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLE 195 (822)
Q Consensus 129 v~~LL~rk~~e~l~fL~~~----------~~ivd~LlkHI---~~~aImDlLlrLIt~de~~~~~~~~il~WL~eq~LI~ 195 (822)
+..++.......++.++.. +-+|..|+... +...++++|..+ .++ .+..|..
T Consensus 9 l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~~il~~~---~~P------------~~K~~~~ 73 (668)
T PF04388_consen 9 LLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRALEILVGV---QEP------------HDKHLFD 73 (668)
T ss_pred HHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHHHHHHhc---CCc------------cHHHHHH
Q ss_pred HHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceeccceeeeeecccccccccch
Q 003408 196 MIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGT 275 (822)
Q Consensus 196 ~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~lsIli~LL~~~r~n~s~ 275 (822)
+|=+.|.... .-.-+--+||.|++..| +.+-+|.....+..||+++..+.. ..++..++.+++.||
T Consensus 74 ~l~~~~~~~~---~Rl~~L~Ll~~~v~~qp-~~l~~i~~t~Lf~~LLk~L~~D~~-~~~~~~al~~LimlL--------- 139 (668)
T PF04388_consen 74 KLNDYFVKPS---YRLQALTLLGHFVRSQP-PWLYKILQTPLFKSLLKCLQFDTS-ITVVSSALLVLIMLL--------- 139 (668)
T ss_pred HHHHHHcCch---hHHHHHHHHHHHHhcCC-chHHHHhcChhHHHHHHHHhhccc-HHHHHHHHHHHHHHh---------
Q ss_pred hhhhcccccCCCccccCchhhHhHHHhHHHHHHhh
Q 003408 276 YYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLL 310 (822)
Q Consensus 276 y~~~~~~l~~~~~~~~~pe~l~~il~~L~~l~~LL 310 (822)
|-+-..+-++|.+|+.++
T Consensus 140 -----------------P~ip~~l~~~L~~Lf~If 157 (668)
T PF04388_consen 140 -----------------PHIPSSLGPHLPDLFNIF 157 (668)
T ss_pred -----------------ccccchhhHHHHHHHHHH
No 43
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=26.39 E-value=8.8e+02 Score=29.68 Aligned_cols=212 Identities=16% Similarity=0.224 Sum_probs=98.4
Q ss_pred CCHHHhhCChhHHHHHHhhchhHHHHhhcHHHHHHHHHHhhcCCCcchHhhhccccccchhhhhccc---hHHHHHHhhc
Q 003408 23 FTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCE---VDIILKTLVE 99 (822)
Q Consensus 23 ~TLEeLLdEddlLQE~K~~N~kLIdFL~kpe~lekLI~YI~~e~~ed~e~k~~~Kyp~iAsEILssd---v~~I~d~Lve 99 (822)
.+++=|+++-++.++..- |+++ +. --.+|+.|++++..-....+.---+.-.+|+.|-|- |..+-..|.
T Consensus 357 l~~~ll~n~~e~~~~~~~-nq~f---I~---a~~~~~e~~t~~~~~~vn~~~d~l~~~a~~l~LkS~SrSV~~LRTgL~- 428 (743)
T COG5369 357 LTPELLFNMYELTAGLEE-NQRF---IA---ARSKMIESVTGTFKTKVNRKQDDLDFVAIVLFLKSMSRSVTFLRTGLL- 428 (743)
T ss_pred cCHHHHHhHHHHhhhhhh-hhhh---hH---HHHHHHHhhhhhhhccCCccchHHHHHHHHHHHHHhhHHHHHHHhhcc-
Confidence 455666777777776664 5443 32 346889999976421111110001223455655543 222223333
Q ss_pred CHHHHHHHHhhcCCCC----------------CCChhhhhhHHH----HHHHHHhcCch-------hHHHHHHH--hhHH
Q 003408 100 DEELMNLLFSFLEPKD----------------SHSTLLAGYFSK----VVICLLLRKTV-------PLMHYIKA--HQEI 150 (822)
Q Consensus 100 de~lL~~L~sfL~~~~----------------~ln~llAgyFsK----Iv~~LL~rk~~-------e~l~fL~~--~~~i 150 (822)
+-.....|...|..+. +..++.++|.-| |+..++..|.. =++.++.- +.+.
T Consensus 429 d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~e 508 (743)
T COG5369 429 DYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNE 508 (743)
T ss_pred ccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchh
Confidence 3334455555554421 455666666554 44455543322 11222211 1122
Q ss_pred HHHHHHhhCchHHHHHH--------------HHHhcccccccccchhhhHHHh---hhH-HHHHHHHhcCCCCCHHHHhh
Q 003408 151 MARLVDLIGITSIMEVL--------------IRLIGADEHMYTNFTESMQWIE---DTN-VLEMIVDKFSSSDSPEVHAN 212 (822)
Q Consensus 151 vd~LlkHI~~~aImDlL--------------lrLIt~de~~~~~~~~il~WL~---eq~-LI~~Ll~~L~~s~s~ev~~N 212 (822)
--.+++.|+..-|.++. +|=.+|+.... ....+.+. .++ |..+|++++....+-+++.-
T Consensus 509 kf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~kn---Ekskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~ 585 (743)
T COG5369 509 KFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKN---EKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEG 585 (743)
T ss_pred hhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccc---cccceeEEecChHHHHHHHHHHHHHhcCchhhhhh
Confidence 22466666665555544 55556654321 11222222 234 67788888766555555433
Q ss_pred HHHHHHHHHhcCchhHHh-hcCChHHHHHHHHHHhc
Q 003408 213 AAETLCSITRSAPPALAA-KISSPNFIGRLFRHALE 247 (822)
Q Consensus 213 aaeiL~~IIr~spn~L~~-~L~S~e~I~~Ll~~il~ 247 (822)
+.+|..+.....+ +-. -+...+.+.-++.++++
T Consensus 586 -~yilv~~aa~d~~-l~~~V~~q~~~L~~i~eil~e 619 (743)
T COG5369 586 -CYILVRNAACDDT-LDYIVQSQEDMLDSIFEILDE 619 (743)
T ss_pred -HHHHHHHHhccch-HHHHHHhHHHHHHHHHHHHHH
Confidence 4455444433221 111 12234455555556654
No 44
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=25.49 E-value=37 Score=23.02 Aligned_cols=11 Identities=64% Similarity=1.171 Sum_probs=7.4
Q ss_pred CChhHHHHHHh
Q 003408 30 DEDDIIQECKA 40 (822)
Q Consensus 30 dEddlLQE~K~ 40 (822)
|+|+||+||-+
T Consensus 1 d~deiL~~CI~ 11 (20)
T PF05924_consen 1 DEDEILQECIG 11 (20)
T ss_dssp --HHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 46789999964
No 45
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=25.33 E-value=4.1e+02 Score=29.71 Aligned_cols=55 Identities=20% Similarity=0.359 Sum_probs=34.8
Q ss_pred hhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhC----------chHHHHHHHHHhccccc
Q 003408 121 LAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIG----------ITSIMEVLIRLIGADEH 176 (822)
Q Consensus 121 lAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~----------~~aImDlLlrLIt~de~ 176 (822)
+.+|+-=++.++...+...+++.++.+. .|-.+|+|+. .+.|+.+|++-+..++.
T Consensus 115 li~FL~~~i~~~~~~k~~~Y~~LVk~N~-~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~ 179 (292)
T PF13929_consen 115 LISFLKLVIINLSSNKSFNYWDLVKRNK-IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDEN 179 (292)
T ss_pred HHHHHHHHHhccccccchHHHHHHHhhH-HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccc
Confidence 3444444455555555555777777764 5566666665 46789999998887544
No 46
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.97 E-value=1.9e+02 Score=36.34 Aligned_cols=50 Identities=18% Similarity=0.176 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceeccceeeeeeccc
Q 003408 213 AAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLD 267 (822)
Q Consensus 213 aaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~lsIli~LL~ 267 (822)
|+..+++|=|++.... =..+.|+.-|+..+=+ +...++..++.|+-.||+
T Consensus 409 aa~aV~AiGrCA~~~~---sv~~tCL~gLv~Llss--hde~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 409 AAAAVKAIGRCASRIG---SVTDTCLNGLVQLLSS--HDELVVAEAVVVIKRLLQ 458 (968)
T ss_pred HHHHHHHHHHHHHhhC---chhhHHHHHHHHHHhc--ccchhHHHHHHHHHHHHh
Confidence 4445555555443211 1245666667665544 235666667777766764
No 47
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function.
Probab=24.52 E-value=3e+02 Score=28.81 Aligned_cols=133 Identities=18% Similarity=0.217 Sum_probs=70.3
Q ss_pred hhhccchHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHH-HhhHHHHHHHHhhCchH
Q 003408 84 EIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIK-AHQEIMARLVDLIGITS 162 (822)
Q Consensus 84 EILssdv~~I~d~Lvede~lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~-~~~~ivd~LlkHI~~~a 162 (822)
-|+-+.-..|.+.|+++ +.+..++..|+-++.....-|+| -..+.++. .+-+-|. .++.+...+=+.....-
T Consensus 35 ~li~ln~~~i~e~llsd-e~i~~vvG~LEYDp~~~~~ka~h-----R~fL~~~~-~FkeVIpi~~~~l~~kIhqtyRlqY 107 (193)
T PF04802_consen 35 TLILLNDPEIFEILLSD-ENIMDVVGILEYDPEFPQPKANH-----REFLKEKA-KFKEVIPIPDPELLSKIHQTYRLQY 107 (193)
T ss_pred HHHHcCCchHHHHHhch-HHHHHHhhhhccCCcccccccch-----HHHHHhCC-CCceeeecCCHHHHHHHHHHHhHHH
Confidence 34445556688888884 55566777777665433222222 01111111 1111111 12233322222333333
Q ss_pred HHHHHHHHhccccc--------ccccchhhhHHHhh-hHHHHHHHHhcCC-CCCHHHHhhHHHHHHHHHhcC
Q 003408 163 IMEVLIRLIGADEH--------MYTNFTESMQWIED-TNVLEMIVDKFSS-SDSPEVHANAAETLCSITRSA 224 (822)
Q Consensus 163 ImDlLlrLIt~de~--------~~~~~~~il~WL~e-q~LI~~Ll~~L~~-s~s~ev~~NaaeiL~~IIr~s 224 (822)
+-|+++.= ..|++ .+-+..++++++.+ .+++++|+..+.. ..+.+....+.-+|++++.++
T Consensus 108 LkDvvL~r-~lDd~~~s~L~s~I~~n~~~Iv~~l~~d~~fL~~Lf~~l~~~~~~~~~r~d~v~fL~e~c~~a 178 (193)
T PF04802_consen 108 LKDVVLPR-FLDDNTFSTLNSLIFFNQVEIVNMLQDDENFLEELFAILKDPSTSDERRRDGVKFLHEFCSLA 178 (193)
T ss_pred HHHHHccc-ccccHHHHHHHHHHHHhHHHHHHHHHhCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44443331 11221 11234678999976 5699999999954 456777788889999998654
No 48
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=23.73 E-value=4.4e+02 Score=29.97 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHhcCchh----HHHHHHHh-hHHHHHHHHhhCchHHHHHHHHHhc-ccccccccchhhhHHHhhhHHHHH
Q 003408 123 GYFSKVVICLLLRKTVP----LMHYIKAH-QEIMARLVDLIGITSIMEVLIRLIG-ADEHMYTNFTESMQWIEDTNVLEM 196 (822)
Q Consensus 123 gyFsKIv~~LL~rk~~e----~l~fL~~~-~~ivd~LlkHI~~~aImDlLlrLIt-~de~~~~~~~~il~WL~eq~LI~~ 196 (822)
.-.+-|..+|++++.+. ..+||..| |++++.|++.-+.+.|+=.-=.++. |-+. .....++-....+.+
T Consensus 94 Kdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~-----e~l~~~iL~~~~f~~ 168 (335)
T PF08569_consen 94 KDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKH-----ESLAKIILYSECFWK 168 (335)
T ss_dssp HHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTS-----HHHHHHHHTSGGGGG
T ss_pred ccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhh-----HHHHHHHhCcHHHHH
Confidence 34566888888877443 68999999 9999999998887766533222221 1121 112333333444455
Q ss_pred HHHhcCCCCCHHHHhhHHHHHHHHHhcCc
Q 003408 197 IVDKFSSSDSPEVHANAAETLCSITRSAP 225 (822)
Q Consensus 197 Ll~~L~~s~s~ev~~NaaeiL~~IIr~sp 225 (822)
+++.+ ...+.++.+.|...+++|.+...
T Consensus 169 ff~~~-~~~~Fdiasdaf~t~~~llt~hk 196 (335)
T PF08569_consen 169 FFKYV-QLPNFDIASDAFSTFKELLTRHK 196 (335)
T ss_dssp HHHHT-TSSSHHHHHHHHHHHHHHHHSSH
T ss_pred HHHHh-cCCccHhHHHHHHHHHHHHhccH
Confidence 55543 45678999999999999987654
No 49
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=22.92 E-value=2.4e+02 Score=33.24 Aligned_cols=244 Identities=10% Similarity=0.077 Sum_probs=0.0
Q ss_pred hhHHHHHHhhchhHHHH-hhcHHHHHHHHHHhhcCCCcchHhhhccccccchhhhhccchHHHHHHhhcCHHHHHHHHhh
Q 003408 32 DDIIQECKALNGRLINF-LRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSF 110 (822)
Q Consensus 32 ddlLQE~K~~N~kLIdF-L~kpe~lekLI~YI~~e~~ed~e~k~~~Kyp~iAsEILssdv~~I~d~Lvede~lL~~L~sf 110 (822)
+|++++..+.-.-+.++ +.+++....++.++..+ +.-...+=.++.+-++++........ ..+.+++.|.+.
T Consensus 79 ~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~-----d~~i~~~a~~iLt~l~~~~~~~~~~~--~l~~~~~~l~~~ 151 (429)
T cd00256 79 DDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQ-----DQFIVHMSFSILAKLACFGLAKMEGS--DLDYYFNWLKEQ 151 (429)
T ss_pred HHHHHhchHHHHHHHHHhhccccchHHHHHHHcCC-----chhHHHHHHHHHHHHHhcCccccchh--HHHHHHHHHHHH
Q ss_pred cCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCchH-HHHHHHHHhcccccccccchhhhHHHh
Q 003408 111 LEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITS-IMEVLIRLIGADEHMYTNFTESMQWIE 189 (822)
Q Consensus 111 L~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~~a-ImDlLlrLIt~de~~~~~~~~il~WL~ 189 (822)
|....+.+....+- ..+..|+..+.- ..+.-..+.+..|+..|...+ -..++...+-|-=... ........+.
T Consensus 152 l~~~~~~~~~~~~v--~~L~~LL~~~~~---R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~~~ 225 (429)
T cd00256 152 LNNITNNDYVQTAA--RCLQMLLRVDEY---RFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLT-FNPHAAEVLK 225 (429)
T ss_pred hhccCCcchHHHHH--HHHHHHhCCchH---HHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHh-ccHHHHHhhc
Q ss_pred hhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHH----HHHHHHhcCCCCcceeccceeeeeec
Q 003408 190 DTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIG----RLFRHALENSRPKSVLVNSLSICISL 265 (822)
Q Consensus 190 eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~----~Ll~~il~~~~~~S~Lvn~lsIli~L 265 (822)
+.++|+.|++.+..+.-+-+..-+--+|..++..+.+.=......+..|. +++..+-...=...-|+.-+..+-+.
T Consensus 226 ~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~ 305 (429)
T cd00256 226 RLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEE 305 (429)
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q ss_pred ccccccccchhhhhcccccCCCc
Q 003408 266 LDPKRLTLGTYYMFNRQLTHGST 288 (822)
Q Consensus 266 L~~~r~n~s~y~~~~~~l~~~~~ 288 (822)
|+.+.+..+.|+.|...+..|.+
T Consensus 306 L~~~~k~ltsfD~Y~~El~sg~L 328 (429)
T cd00256 306 LKNSVQDLSSFDEYKSELRSGRL 328 (429)
T ss_pred HHHHHHHcCCHHHHHHHHhcCCc
No 50
>PTZ00269 variant surface glycoprotein; Provisional
Probab=22.61 E-value=70 Score=37.94 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=9.2
Q ss_pred CCCCCCCCCCchhhHHH
Q 003408 782 VDGNHPSSDPAATEVVK 798 (822)
Q Consensus 782 ~~~~~~~~~~~~~~~~~ 798 (822)
.-|++|..|++|+|+++
T Consensus 387 ~~~~~~~~~~~~~~~~~ 403 (472)
T PTZ00269 387 SVPETPADPSDPTQSTT 403 (472)
T ss_pred CCCCCCCCCCCCccccc
Confidence 33445555566666554
No 51
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=22.13 E-value=7.6e+02 Score=26.97 Aligned_cols=102 Identities=15% Similarity=0.167 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCch--------HHHHHHHHHhcccccccccchhhhHHHhhhHHHHHH
Q 003408 126 SKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGIT--------SIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMI 197 (822)
Q Consensus 126 sKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~~--------aImDlLlrLIt~de~~~~~~~~il~WL~eq~LI~~L 197 (822)
.+-+..|+.++...-- ....++..++++++.+ .+..+|..|+.. +...+.++. ..+|..+
T Consensus 61 l~gl~~L~~~~~~~~~----~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~-------~~~~l~~~~-~~fv~~~ 128 (262)
T PF14500_consen 61 LKGLLALVKMKNFSPE----SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN-------HREALQSMG-DDFVYGF 128 (262)
T ss_pred HHHHHHHHhCcCCChh----hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH-------hHHHHHhch-hHHHHHH
Confidence 5666777765541000 0234555555555432 233444444331 112233332 4688888
Q ss_pred HHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhc
Q 003408 198 VDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALE 247 (822)
Q Consensus 198 l~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~ 247 (822)
+..++.+.+|..-.-+.+++..|++.-+ -.+.++.||+.+.-
T Consensus 129 i~~~~gEkDPRnLl~~F~l~~~i~~~~~--------~~~~~e~lFd~~~c 170 (262)
T PF14500_consen 129 IQLIDGEKDPRNLLLSFKLLKVILQEFD--------ISEFAEDLFDVFSC 170 (262)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHhcc--------cchhHHHHHHHhhh
Confidence 8888888888877666677766654332 37778888887654
No 52
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=21.12 E-value=5.2e+02 Score=22.82 Aligned_cols=110 Identities=13% Similarity=0.117 Sum_probs=57.4
Q ss_pred HHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCc--hHHHHHHHHHhccccccccc
Q 003408 103 LMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI--TSIMEVLIRLIGADEHMYTN 180 (822)
Q Consensus 103 lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~--~aImDlLlrLIt~de~~~~~ 180 (822)
.+..|..+|.+.. +-..-.-...+..+.... .+...++.. .++++.|++.+.. +.+..--+..++.=-..
T Consensus 8 ~i~~l~~~l~~~~---~~~~~~a~~~l~~l~~~~-~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~--- 79 (120)
T cd00020 8 GLPALVSLLSSSD---ENVQREAAWALSNLSAGN-NDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNLAAG--- 79 (120)
T ss_pred ChHHHHHHHHcCC---HHHHHHHHHHHHHHhcCC-HHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHHccC---
Confidence 4556666666543 223333344555555442 334444433 3566666666653 34433333332211110
Q ss_pred chhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHH
Q 003408 181 FTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSIT 221 (822)
Q Consensus 181 ~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~II 221 (822)
......-+.+.++++.|+..++.. +..+...++.+|+.|.
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLA 119 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhh
Confidence 111233345567888898888765 5677778888887764
No 53
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=20.53 E-value=5.4e+02 Score=25.54 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH---HhhcCCCc----hhHHHHHHHHHHHhcCCChHHHHHHhhhcchH
Q 003408 336 KIVEFISVLLTVGSEAAEKELIRHGAVRRILDL---FFEYPYNN----FLHHHVENIILSCLECKNAPLIEHLLHECNLV 408 (822)
Q Consensus 336 KIvELIa~LL~~nn~~i~~~Li~~~ii~~LLdL---FFkYpwNN----fLH~~Ve~II~~ile~~n~~L~~~Lf~~~~Li 408 (822)
+++.=+.+.|+++...-.+++++.|=+..|+++ +-++.+.+ .++..+..|+.+|++. ..=..+++.....+
T Consensus 83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~--~~G~~~v~~~~~~v 160 (187)
T PF06371_consen 83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT--KYGLEAVLSHPDSV 160 (187)
T ss_dssp HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS--HHHHHHHHCSSSHH
T ss_pred HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc--HHHHHHHHcCcHHH
Confidence 677777888999887777778777755555554 44555555 7889999999999974 23377888888888
Q ss_pred HHHHHH
Q 003408 409 GKILEA 414 (822)
Q Consensus 409 ~rIlea 414 (822)
..|...
T Consensus 161 ~~i~~~ 166 (187)
T PF06371_consen 161 NLIALS 166 (187)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 877664
Done!