Query 003408
Match_columns 822
No_of_seqs 225 out of 404
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 00:13:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4auo_C Triple-helical collagen 97.0 0.0012 4.2E-08 50.0 5.9 9 746-754 4-12 (40)
2 4b8j_A Importin subunit alpha- 94.3 2.2 7.4E-05 47.7 20.1 236 103-391 203-443 (528)
3 4hxt_A De novo protein OR329; 91.6 4.4 0.00015 39.6 15.5 215 104-370 4-222 (252)
4 1wa5_B Importin alpha subunit; 89.5 7.2 0.00025 43.6 16.7 233 103-390 216-456 (530)
5 4b8j_A Importin subunit alpha- 86.8 7.7 0.00026 43.1 14.6 165 185-392 321-497 (528)
6 2jdq_A Importin alpha-1 subuni 83.0 39 0.0013 35.9 17.5 161 185-390 227-389 (450)
7 3tpo_A Importin subunit alpha- 79.4 75 0.0026 35.5 19.0 77 333-411 393-473 (529)
8 2jdq_A Importin alpha-1 subuni 77.1 79 0.0027 33.5 19.6 262 98-414 60-326 (450)
9 4db8_A Armadillo-repeat protei 76.4 20 0.00067 35.2 11.6 197 126-371 33-233 (252)
10 4hxt_A De novo protein OR329; 75.7 33 0.0011 33.2 12.9 132 102-243 86-219 (252)
11 1wa5_B Importin alpha subunit; 73.0 80 0.0027 35.0 16.8 39 186-225 335-373 (530)
12 3grl_A General vesicular trans 70.4 86 0.0029 37.0 16.5 203 146-390 119-341 (651)
13 3ul1_B Importin subunit alpha- 70.0 1.4E+02 0.0048 33.2 23.1 181 185-412 267-455 (510)
14 1xqr_A HSPBP1 protein; armadil 66.6 65 0.0022 33.8 13.5 159 189-392 78-239 (296)
15 2z6h_A Catenin beta-1, beta-ca 64.8 2E+02 0.0067 32.9 23.9 297 51-414 54-360 (644)
16 1wcz_A Glutamyl endopeptidase; 62.2 1.9 6.6E-05 44.8 0.6 17 731-747 213-229 (268)
17 4db6_A Armadillo repeat protei 59.6 80 0.0027 29.8 11.7 115 102-225 54-170 (210)
18 3ul1_B Importin subunit alpha- 58.0 2.3E+02 0.0078 31.4 17.4 38 187-225 311-348 (510)
19 4db6_A Armadillo repeat protei 56.0 91 0.0031 29.4 11.4 156 43-221 44-208 (210)
20 4db8_A Armadillo-repeat protei 55.5 1.2E+02 0.0041 29.4 12.5 181 186-414 48-230 (252)
21 3grl_A General vesicular trans 54.9 52 0.0018 38.9 10.9 125 93-224 113-243 (651)
22 2npp_B PP2A, B subunit, serine 54.9 62 0.0021 36.5 11.2 56 161-221 135-190 (449)
23 1wcz_A Glutamyl endopeptidase; 54.0 2.7 9.2E-05 43.7 0.0 11 774-784 244-254 (268)
24 3tpo_A Importin subunit alpha- 51.0 2.9E+02 0.01 30.6 18.8 39 186-225 329-367 (529)
25 1xqr_A HSPBP1 protein; armadil 48.8 67 0.0023 33.7 9.8 135 82-225 102-241 (296)
26 2o8l_A V8 protease, taphylococ 47.8 4 0.00014 42.5 0.2 53 729-784 211-263 (274)
27 3now_A UNC-45 protein, SD10334 46.0 4.7E+02 0.016 31.5 23.3 301 52-413 376-715 (810)
28 2z6g_A B-catenin; FULL-length, 44.6 4E+02 0.014 31.5 16.7 59 332-394 608-666 (780)
29 4fdd_A Transportin-1; heat rep 44.0 4.5E+02 0.016 30.8 17.8 112 126-245 607-720 (852)
30 1upk_A MO25 protein; transfera 40.4 3.9E+02 0.013 29.0 14.4 169 42-224 153-334 (341)
31 1jdh_A Beta-catenin; beta-cate 37.4 4.2E+02 0.014 28.5 21.3 298 51-414 57-363 (529)
32 1upk_A MO25 protein; transfera 37.2 4E+02 0.014 28.9 13.6 124 91-222 154-283 (341)
33 4atg_A TAF6; transcription, TF 35.1 1.7E+02 0.0058 29.3 9.7 125 121-251 9-146 (196)
34 3nmw_A APC variant protein; AR 25.0 5.3E+02 0.018 27.4 12.3 249 77-369 40-314 (354)
35 2z6g_A B-catenin; FULL-length, 24.3 9.1E+02 0.031 28.3 23.6 257 102-414 234-496 (780)
36 2wd6_A Agglutinin receptor; ce 24.2 26 0.00088 38.3 1.6 13 554-566 156-168 (349)
37 2qk2_A LP04448P; mini spindles 21.3 5.6E+02 0.019 24.8 11.0 70 150-222 121-205 (242)
38 3nmz_A APC variant protein; pr 21.2 8.7E+02 0.03 26.9 14.4 205 121-369 216-430 (458)
39 2x1g_F Cadmus; transport prote 20.9 5.9E+02 0.02 30.3 12.8 61 162-226 848-910 (971)
No 1
>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct}
Probab=96.99 E-value=0.0012 Score=50.00 Aligned_cols=9 Identities=33% Similarity=0.826 Sum_probs=3.3
Q ss_pred CCCCCCCCC
Q 003408 746 GSPSEPAES 754 (822)
Q Consensus 746 ~~p~~p~~p 754 (822)
|.+|.+|.+
T Consensus 4 G~~G~~G~~ 12 (40)
T 4auo_C 4 GPPGPPGPQ 12 (40)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 333333333
No 2
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=94.31 E-value=2.2 Score=47.65 Aligned_cols=236 Identities=16% Similarity=0.148 Sum_probs=128.9
Q ss_pred HHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCc--hHHHHHHHHHhcc-cccccc
Q 003408 103 LMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI--TSIMEVLIRLIGA-DEHMYT 179 (822)
Q Consensus 103 lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~--~aImDlLlrLIt~-de~~~~ 179 (822)
.+..|..+|... .++.+.-.-+.++..|...++......+ ...+..|++.+.. ..+..-.+..+.. -..
T Consensus 203 ~l~~Ll~lL~~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~---~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--- 274 (528)
T 4b8j_A 203 ALLPLLAQLNEH--TKLSMLRNATWTLSNFCRGKPQPSFEQT---RPALPALARLIHSNDEEVLTDACWALSYLSDG--- 274 (528)
T ss_dssp CHHHHHHTCCTT--CCHHHHHHHHHHHHHHHCSSSCCCHHHH---TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS---
T ss_pred cHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCCCCcHHHH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC---
Confidence 466777777433 2344445556677777765433322222 4456666665543 2333322222221 111
Q ss_pred cchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceeccce
Q 003408 180 NFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSL 259 (822)
Q Consensus 180 ~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~l 259 (822)
.....+.+.+.++++.|+..|... +..+...|+..|..|....+ .....+.....+..|+..+-.... ..+...++
T Consensus 275 -~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~A~ 350 (528)
T 4b8j_A 275 -TNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDD-AQTQCIIDHQALPCLLSLLTQNLK-KSIKKEAC 350 (528)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHHHSCCC-HHHHHHHH
T ss_pred -CHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHHHHHHHcCCH-HHHHHHHHhhhHHHHHHHHcCCCc-HHHHHHHH
Confidence 112344556678899999988765 57888888888888876433 333344445556666554433211 11111222
Q ss_pred eeeeecccccccccchhhhhcccccCCCccccCchhhHhHH--HhHHHHHHhhccCccccccccccCcccCCCcchhhHH
Q 003408 260 SICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGML--GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKI 337 (822)
Q Consensus 260 sIli~LL~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il--~~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKI 337 (822)
.++-.|.. .++..+..++ .-++.|+++|.... -..|..+
T Consensus 351 ~~L~nl~~-----------------------~~~~~~~~~~~~~~i~~L~~lL~~~~----------------~~v~~~a 391 (528)
T 4b8j_A 351 WTISNITA-----------------------GNKDQIQAVINAGIIGPLVNLLQTAE----------------FDIKKEA 391 (528)
T ss_dssp HHHHHHHT-----------------------SCHHHHHHHHHTTCHHHHHHHHHHSC----------------HHHHHHH
T ss_pred HHHHHHHC-----------------------CCHHHHHHHHHCCCHHHHHHHHhcCC----------------HHHHHHH
Confidence 21111110 1122222222 13445556664321 1467788
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhc
Q 003408 338 VEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE 391 (822)
Q Consensus 338 vELIa~LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile 391 (822)
+..+..|...+++.....|++.|+++.++++.-. -+.-+...+..++..++.
T Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC--PDIRIVTVCLEGLENILK 443 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHH
Confidence 9999999888667777888999999999998755 344555556666666653
No 3
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=91.63 E-value=4.4 Score=39.57 Aligned_cols=215 Identities=16% Similarity=0.170 Sum_probs=116.9
Q ss_pred HHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCch--HHHHHHHHHhcccccccccc
Q 003408 104 MNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGIT--SIMEVLIRLIGADEHMYTNF 181 (822)
Q Consensus 104 L~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~~--aImDlLlrLIt~de~~~~~~ 181 (822)
+..|..+|.++. +-..-.-++++..|..... +....+.. .+.+..|++.+... .+....+..+..--.. .
T Consensus 4 i~~L~~~L~~~~---~~~~~~a~~~L~~l~~~~~-~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~ 75 (252)
T 4hxt_A 4 VEKLVKLLTSTD---SETQKEAARDLAEIASGPA-SAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASG---P 75 (252)
T ss_dssp HHHHHHHTTCSC---HHHHHHHHHHHHHHHTSCH-HHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---C
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCc-HHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC---C
Confidence 566777887654 3333344567777766654 33333333 35777777777543 3333333332211100 0
Q ss_pred hhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceeccceee
Q 003408 182 TESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSI 261 (822)
Q Consensus 182 ~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~lsI 261 (822)
......+.+.+.++.|+..|.. .+.++..+|+..|..|....+. ....+.....+..|++.+-... ..+...++..
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~~~--~~~~~~a~~~ 151 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDE-AIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARA 151 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHH
Confidence 1234456677899999998874 5688999999999999865432 2223333455555654333221 1122222222
Q ss_pred eeecccccccccchhhhhcccccCCCccccCchhhHhHHH--hHHHHHHhhccCccccccccccCcccCCCcchhhHHHH
Q 003408 262 CISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVE 339 (822)
Q Consensus 262 li~LL~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il~--~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIvE 339 (822)
+-.|.. ..+.....+.. -+..|+++|..+. ...|..++.
T Consensus 152 L~~l~~-----------------------~~~~~~~~~~~~~~i~~L~~ll~~~~----------------~~v~~~a~~ 192 (252)
T 4hxt_A 152 LANIAS-----------------------GPDEAIKAIVDAGGVEVLVKLLTSTD----------------SEVQKEAAR 192 (252)
T ss_dssp HHHHTT-----------------------SCHHHHHHHHHTTHHHHHHHHTTCSC----------------HHHHHHHHH
T ss_pred HHHHHc-----------------------CCHHHHHHHHHCcCHHHHHHHHCCCC----------------HHHHHHHHH
Confidence 222211 01211222221 3445566664221 257778888
Q ss_pred HHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh
Q 003408 340 FISVLLTVGSEAAEKELIRHGAVRRILDLFF 370 (822)
Q Consensus 340 LIa~LL~~nn~~i~~~Li~~~ii~~LLdLFF 370 (822)
.+..|... ++...+.+.+.|+++.++.+.-
T Consensus 193 ~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~ 222 (252)
T 4hxt_A 193 ALANIASG-PTSAIKAIVDAGGVEVLQKLLT 222 (252)
T ss_dssp HHHHHTTS-BHHHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHcC-CHHHHHHHHHCCCHHHHHHHHC
Confidence 88888763 5556677888898888887764
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=89.51 E-value=7.2 Score=43.56 Aligned_cols=233 Identities=15% Similarity=0.142 Sum_probs=115.0
Q ss_pred HHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcC-chhHHHHHHHhhHHHHHHHHhhCch--HHHHHHHHHhcc-ccccc
Q 003408 103 LMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRK-TVPLMHYIKAHQEIMARLVDLIGIT--SIMEVLIRLIGA-DEHMY 178 (822)
Q Consensus 103 lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk-~~e~l~fL~~~~~ivd~LlkHI~~~--aImDlLlrLIt~-de~~~ 178 (822)
.+..|..+|.. .++-+...-+.++..|.... +..- +.. ...++..|++.+... .+..-.+..+.. -..
T Consensus 216 ~l~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~~~--~~~-~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-- 287 (530)
T 1wa5_B 216 AMEPILGLFNS---NKPSLIRTATWTLSNLCRGKKPQPD--WSV-VSQALPTLAKLIYSMDTETLVDACWAISYLSDG-- 287 (530)
T ss_dssp CHHHHHHGGGS---CCHHHHHHHHHHHHHHHCCSSSCCC--HHH-HGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--
T ss_pred cHHHHHHHhcc---CCHHHHHHHHHHHHHHhCCCCCCCc--HHH-HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--
Confidence 46666677754 23333334455666666543 2111 111 134566666655432 222222222221 111
Q ss_pred ccchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceeccc
Q 003408 179 TNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNS 258 (822)
Q Consensus 179 ~~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~ 258 (822)
....++.+.+.++++.|+..|.. .+..+..+|..+|..|....+. ..+.+.....+..|+..+-.. . ..+-..+
T Consensus 288 --~~~~~~~~~~~~~v~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~-~-~~vr~~A 361 (530)
T 1wa5_B 288 --PQEAIQAVIDVRIPKRLVELLSH-ESTLVQTPALRAVGNIVTGNDL-QTQVVINAGVLPALRLLLSSP-K-ENIKKEA 361 (530)
T ss_dssp --CHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCS-C-HHHHHHH
T ss_pred --CHHHHHHHHhcCcHHHHHHHHCC-CChhhHHHHHHHHHHHHcCCHH-HHHHHHHcchHHHHHHHHcCC-C-HHHHHHH
Confidence 11234455567889999999864 4678888888888888754332 222222233444444322211 1 0111111
Q ss_pred eeeeeecccccccccchhhhhcccccCCCccccCchhhHhHHH--hHHHHHHhhccCccccccccccCcccCCCcchhhH
Q 003408 259 LSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLK 336 (822)
Q Consensus 259 lsIli~LL~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il~--~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLK 336 (822)
+..+-.|. ...++.+..++. -++.|+.+|..+. -..|..
T Consensus 362 ~~aL~~l~-----------------------~~~~~~~~~~~~~~~l~~L~~lL~~~~----------------~~v~~~ 402 (530)
T 1wa5_B 362 CWTISNIT-----------------------AGNTEQIQAVIDANLIPPLVKLLEVAE----------------YKTKKE 402 (530)
T ss_dssp HHHHHHHT-----------------------TSCHHHHHHHHHTTCHHHHHHHHHHSC----------------HHHHHH
T ss_pred HHHHHHHH-----------------------cCCHHHHHHHHHCCCHHHHHHHHhcCC----------------HHHHHH
Confidence 11111110 012222222221 3445555554221 146777
Q ss_pred HHHHHHHHHhcCcH--HHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHh
Q 003408 337 IVEFISVLLTVGSE--AAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCL 390 (822)
Q Consensus 337 IvELIa~LL~~nn~--~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~il 390 (822)
++..+..|...... ...+.+++.|+++.|+++.-.- +.-+...+..++..++
T Consensus 403 a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 403 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA--DNRIIEVTLDALENIL 456 (530)
T ss_dssp HHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHH
Confidence 88888888886554 5556788999999999987542 4444445555555554
No 5
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=86.75 E-value=7.7 Score=43.13 Aligned_cols=165 Identities=15% Similarity=0.120 Sum_probs=92.8
Q ss_pred hHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceeccceeeeee
Q 003408 185 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICIS 264 (822)
Q Consensus 185 l~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~lsIli~ 264 (822)
.+.+.+.++++.|+..|....+..+...|+..|+.|....+ .....+.....+..|+..+-... ..+...++..+-.
T Consensus 321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~-~~~~~~~~~~~i~~L~~lL~~~~--~~v~~~a~~aL~n 397 (528)
T 4b8j_A 321 TQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK-DQIQAVINAGIIGPLVNLLQTAE--FDIKKEAAWAISN 397 (528)
T ss_dssp HHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTCHHHHHHHHHHSC--HHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCH-HHHHHHHHCCCHHHHHHHHhcCC--HHHHHHHHHHHHH
Confidence 34555678899999999876688999999999999986433 22223333344444444332221 0111111111111
Q ss_pred cccccccccchhhhhcccccCCCccccCchhhHhHH--HhHHHHHHhhccCccccccccccCcccCCCcchhhHHHHHHH
Q 003408 265 LLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGML--GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFIS 342 (822)
Q Consensus 265 LL~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il--~~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIvELIa 342 (822)
|.. ...++....++ .-+..|+.+|..+. -..|..++..+.
T Consensus 398 l~~----------------------~~~~~~~~~l~~~~~i~~L~~lL~~~d----------------~~v~~~al~~L~ 439 (528)
T 4b8j_A 398 ATS----------------------GGSHDQIKYLVSEGCIKPLCDLLICPD----------------IRIVTVCLEGLE 439 (528)
T ss_dssp HHH----------------------HSCHHHHHHHHHTTCHHHHHHGGGCSC----------------HHHHHHHHHHHH
T ss_pred HHc----------------------CCCHHHHHHHHHCCCHHHHHHHHcCCC----------------HHHHHHHHHHHH
Confidence 110 00122233332 13445666665321 146677888888
Q ss_pred HHHhcCcH----------HHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhcC
Q 003408 343 VLLTVGSE----------AAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLEC 392 (822)
Q Consensus 343 ~LL~~nn~----------~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile~ 392 (822)
.|+..... .....+.+.|.+..|.+| .+.-|.-++.....|+..++..
T Consensus 440 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L--~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 440 NILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENL--QSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHG--GGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHH--HcCCCHHHHHHHHHHHHHHCCC
Confidence 88875432 234566778888888775 4455777788888888888754
No 6
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=83.00 E-value=39 Score=35.95 Aligned_cols=161 Identities=15% Similarity=0.144 Sum_probs=86.8
Q ss_pred hHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceeccceeeeee
Q 003408 185 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICIS 264 (822)
Q Consensus 185 l~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~lsIli~ 264 (822)
...+.+.++++.|+..|. ..+..+...|+..|..|....+. ..+.+.....+..|+..+-. .. ..+-..++..+-.
T Consensus 227 ~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~-~~-~~vr~~a~~~L~~ 302 (450)
T 2jdq_A 227 IQAVIDAGVCRRLVELLM-HNDYKVVSPALRAVGNIVTGDDI-QTQVILNCSALQSLLHLLSS-PK-ESIKKEACWTISN 302 (450)
T ss_dssp HHHHHHTTTHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHH-HHHHHHTTTHHHHHHHHTTC-SS-HHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHC-CCchhHHHHHHHHHHHHhhCChH-HHHHHHHCccHHHHHHHHcC-CC-HHHHHHHHHHHHH
Confidence 344556778999999886 45678888888988888765432 22223333444444443222 11 1111111111111
Q ss_pred cccccccccchhhhhcccccCCCccccCchhhHhHHH--hHHHHHHhhccCccccccccccCcccCCCcchhhHHHHHHH
Q 003408 265 LLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFIS 342 (822)
Q Consensus 265 LL~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il~--~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIvELIa 342 (822)
|. ...+.....++. -++.|+++|..+. -..|..++..+.
T Consensus 303 l~-----------------------~~~~~~~~~~~~~~~l~~L~~~l~~~~----------------~~v~~~a~~~L~ 343 (450)
T 2jdq_A 303 IT-----------------------AGNRAQIQTVIDANIFPALISILQTAE----------------FRTRKEAAWAIT 343 (450)
T ss_dssp HT-----------------------TSCHHHHHHHHHTTHHHHHHHHHHHSC----------------HHHHHHHHHHHH
T ss_pred HH-----------------------cCCHHHHHHHHHCCCHHHHHHHHhcCC----------------HHHHHHHHHHHH
Confidence 10 011222222221 2334555554221 247788888999
Q ss_pred HHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHh
Q 003408 343 VLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCL 390 (822)
Q Consensus 343 ~LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~il 390 (822)
.|...+++...+.+++.++++.|+++.-.. +.-+...+...+..++
T Consensus 344 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 344 NATSGGSAEQIKYLVELGCIKPLCDLLTVM--DSKIVQVALNGLENIL 389 (450)
T ss_dssp HHHHHCCHHHHHHHHHHTCHHHHHHGGGSS--CHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHCCCHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence 988875655566788899999999987643 3334444444444444
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=79.39 E-value=75 Score=35.51 Aligned_cols=77 Identities=13% Similarity=0.188 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhc----CCChHHHHHHhhhcchH
Q 003408 333 HRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE----CKNAPLIEHLLHECNLV 408 (822)
Q Consensus 333 ~RLKIvELIa~LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile----~~n~~L~~~Lf~~~~Li 408 (822)
.|...+..|..|....+......|++.|+++.|++|.- .+ +.-+-..+.+.+..|+. .....-+..+|.+|..+
T Consensus 393 v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~-~~-d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl 470 (529)
T 3tpo_A 393 TQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AK-DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL 470 (529)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG-CS-CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhc-CC-CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcH
Confidence 56667778888877666665677999999999999864 33 44444455555555553 12334455667777777
Q ss_pred HHH
Q 003408 409 GKI 411 (822)
Q Consensus 409 ~rI 411 (822)
++|
T Consensus 471 ~~i 473 (529)
T 3tpo_A 471 DKI 473 (529)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 8
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=77.09 E-value=79 Score=33.48 Aligned_cols=262 Identities=16% Similarity=0.199 Sum_probs=136.3
Q ss_pred hcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCc--hHHHHHHHHHhcccc
Q 003408 98 VEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI--TSIMEVLIRLIGADE 175 (822)
Q Consensus 98 vede~lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~--~aImDlLlrLIt~de 175 (822)
+....++..|..+|..+. ++...-.-++++..+........-.++ ..+.+..|++.+.. +.+.+.-+..+..--
T Consensus 60 ~~~~~~i~~L~~~L~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~ 135 (450)
T 2jdq_A 60 ISTPGVVARFVEFLKRKE--NCTLQFESAWVLTNIASGNSLQTRIVI--QAGAVPIFIELLSSEFEDVQEQAVWALGNIA 135 (450)
T ss_dssp HTSTTHHHHHHHHHTCTT--CHHHHHHHHHHHHHHHSSCHHHHHHHH--HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHCCCC--CHHHHHHHHHHHHHHhcCCHHHHHHHH--hCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 333346777777776642 333333445666666654333222222 23567777777654 334333333322110
Q ss_pred cccccchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcC-chhHHhhcCChHHHHHHHHHHhcCCCCcce
Q 003408 176 HMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSA-PPALAAKISSPNFIGRLFRHALENSRPKSV 254 (822)
Q Consensus 176 ~~~~~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~s-pn~L~~~L~S~e~I~~Ll~~il~~~~~~S~ 254 (822)
.. .....+.+.+.++++.|+..|....+..+..+++..|..|.+.. +.. ...+. ...+..|+..+-. .. ..+
T Consensus 136 ~~---~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~-~~~l~~L~~~l~~-~~-~~v 208 (450)
T 2jdq_A 136 GD---STMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP-EFAKV-SPCLNVLSWLLFV-SD-TDV 208 (450)
T ss_dssp TT---CHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC-CGGGT-GGGHHHHHHHTTC-CC-HHH
T ss_pred cC---CHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC-CHHHH-HHHHHHHHHHHcc-CC-HHH
Confidence 00 01122344556789999999987778899999999999998754 321 11111 4455555553322 11 122
Q ss_pred eccceeeeeecccccccccchhhhhcccccCCCccccCchhhHhHH--HhHHHHHHhhccCccccccccccCcccCCCcc
Q 003408 255 LVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGML--GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGK 332 (822)
Q Consensus 255 Lvn~lsIli~LL~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il--~~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~ 332 (822)
...++..+-.|.+ ..++....+. ..++.++++|..+. -.
T Consensus 209 ~~~a~~~L~~l~~-----------------------~~~~~~~~~~~~~~i~~L~~ll~~~~----------------~~ 249 (450)
T 2jdq_A 209 LADACWALSYLSD-----------------------GPNDKIQAVIDAGVCRRLVELLMHND----------------YK 249 (450)
T ss_dssp HHHHHHHHHHHTS-----------------------SSHHHHHHHHHTTTHHHHHHHTTCSC----------------HH
T ss_pred HHHHHHHHHHHHC-----------------------CCcHHHHHHHHcCcHHHHHHHHCCCc----------------hh
Confidence 2222222221211 0111111221 13445566664221 14
Q ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCCChHHHHHHhhhcchHHHHH
Q 003408 333 HRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKIL 412 (822)
Q Consensus 333 ~RLKIvELIa~LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile~~n~~L~~~Lf~~~~Li~rIl 412 (822)
.|..++..+..|.... ....+.+++.|+++.++.+.-. + +.-+......++..+..+ +......++ +.+++..++
T Consensus 250 v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~-~-~~~vr~~a~~~L~~l~~~-~~~~~~~~~-~~~~l~~L~ 324 (450)
T 2jdq_A 250 VVSPALRAVGNIVTGD-DIQTQVILNCSALQSLLHLLSS-P-KESIKKEACWTISNITAG-NRAQIQTVI-DANIFPALI 324 (450)
T ss_dssp HHHHHHHHHHHHTTSC-HHHHHHHHTTTHHHHHHHHTTC-S-SHHHHHHHHHHHHHHTTS-CHHHHHHHH-HTTHHHHHH
T ss_pred HHHHHHHHHHHHhhCC-hHHHHHHHHCccHHHHHHHHcC-C-CHHHHHHHHHHHHHHHcC-CHHHHHHHH-HCCCHHHHH
Confidence 5777888888877654 3344567788999999988654 3 445555556666666543 344444444 356777666
Q ss_pred HH
Q 003408 413 EA 414 (822)
Q Consensus 413 ea 414 (822)
..
T Consensus 325 ~~ 326 (450)
T 2jdq_A 325 SI 326 (450)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 9
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=76.44 E-value=20 Score=35.23 Aligned_cols=197 Identities=14% Similarity=0.158 Sum_probs=102.5
Q ss_pred HHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCch--HHHHHHHHHhcccccccccchhhhHHHhhhHHHHHHHHhcCC
Q 003408 126 SKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGIT--SIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSS 203 (822)
Q Consensus 126 sKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~~--aImDlLlrLIt~de~~~~~~~~il~WL~eq~LI~~Ll~~L~~ 203 (822)
++.+..++.+ ..+....+.. .+.+..|++.+... .+..--+..+..--.. .......+.+.+.++.|+..|..
T Consensus 33 ~~~L~~~l~~-~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~ 107 (252)
T 4db8_A 33 TRKFSQILSD-GNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASG---GNEQIQAVIDAGALPALVQLLSS 107 (252)
T ss_dssp HHHHHHHHHH-HHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHcC-CCchHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHHcC
Confidence 3444444444 3333344433 35777777777543 3333323322211000 01123445667899999999976
Q ss_pred CCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceeccceeeeeecccccccccchhhhhcccc
Q 003408 204 SDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQL 283 (822)
Q Consensus 204 s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~lsIli~LL~~~r~n~s~y~~~~~~l 283 (822)
.++.+..+|+..|..|....+.. ...+.....+..|++.+-. .. ..+...++..+-.|..
T Consensus 108 -~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~lL~~-~~-~~v~~~a~~~L~~l~~---------------- 167 (252)
T 4db8_A 108 -PNEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLLSS-PN-EQILQEALWALSNIAS---------------- 167 (252)
T ss_dssp -SCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHGGGC-SC-HHHHHHHHHHHHHHTT----------------
T ss_pred -CCHHHHHHHHHHHHHhhcCCchH-HHHHHHCCCHHHHHHHHhC-CC-HHHHHHHHHHHHHHHc----------------
Confidence 46889999999999987554321 1223334445555543322 11 1122222222222211
Q ss_pred cCCCccccCchhhHhHHH--hHHHHHHhhccCccccccccccCcccCCCcchhhHHHHHHHHHHhcCcHHHHHHHHHhhh
Q 003408 284 THGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGA 361 (822)
Q Consensus 284 ~~~~~~~~~pe~l~~il~--~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIvELIa~LL~~nn~~i~~~Li~~~i 361 (822)
..++....+.. -+..|+++|..+. ...|..++..+..|... ++.....+++.|+
T Consensus 168 -------~~~~~~~~~~~~~~i~~L~~ll~~~~----------------~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~ 223 (252)
T 4db8_A 168 -------GGNEQIQAVIDAGALPALVQLLSSPN----------------EQILQEALWALSNIASG-GNEQKQAVKEAGA 223 (252)
T ss_dssp -------SCHHHHHHHHHTTCHHHHHHGGGCSS----------------HHHHHHHHHHHHHHTTS-CHHHHHHHHHTTH
T ss_pred -------CChHHHHHHHHCCCHHHHHHHHCCCC----------------HHHHHHHHHHHHHHhcC-CHHHHHHHHHCCc
Confidence 11222222221 3445666665321 23677788888888754 4555667888999
Q ss_pred HHHHHHHHhh
Q 003408 362 VRRILDLFFE 371 (822)
Q Consensus 362 i~~LLdLFFk 371 (822)
++.++.+...
T Consensus 224 i~~L~~ll~~ 233 (252)
T 4db8_A 224 LEKLEQLQSH 233 (252)
T ss_dssp HHHHHTTTTC
T ss_pred HHHHHHHhCC
Confidence 9988887754
No 10
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=75.70 E-value=33 Score=33.17 Aligned_cols=132 Identities=17% Similarity=0.165 Sum_probs=74.6
Q ss_pred HHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCch--HHHHHHHHHhcccccccc
Q 003408 102 ELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGIT--SIMEVLIRLIGADEHMYT 179 (822)
Q Consensus 102 ~lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~~--aImDlLlrLIt~de~~~~ 179 (822)
..+..|..+|..+ ++.....-+.++.+|..... +....+.. .+.+..|++.+... .+..-.+..+..--..
T Consensus 86 ~~i~~l~~ll~~~---~~~v~~~a~~~L~~l~~~~~-~~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-- 158 (252)
T 4hxt_A 86 GGVEVLVKLLTST---DSEVQKEAARALANIASGPD-EAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASG-- 158 (252)
T ss_dssp THHHHHHHHTTCS---SHHHHHHHHHHHHHHTTSCH-HHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--
T ss_pred CCHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCH-HHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--
Confidence 4677788888753 34555566677777765433 33333333 35677777776442 3333333333211100
Q ss_pred cchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHH
Q 003408 180 NFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFR 243 (822)
Q Consensus 180 ~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~ 243 (822)
.....+.+.+.+.++.|+..|.. .++.+...|+..|..|....+ .....+.....+..|+.
T Consensus 159 -~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~L~~ 219 (252)
T 4hxt_A 159 -PDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPT-SAIKAIVDAGGVEVLQK 219 (252)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSBH-HHHHHHHHTTHHHHHHH
T ss_pred -CHHHHHHHHHCcCHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHH
Confidence 11223456678899999999874 567889999999998886433 22333333444444443
No 11
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=72.98 E-value=80 Score=34.98 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=29.4
Q ss_pred HHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCc
Q 003408 186 QWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAP 225 (822)
Q Consensus 186 ~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~sp 225 (822)
+.+.+.++++.|+..|... +..+...|+..|..|...++
T Consensus 335 ~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~ 373 (530)
T 1wa5_B 335 QVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNT 373 (530)
T ss_dssp HHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCH
Confidence 3444568899999988765 67888888899988876443
No 12
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=70.37 E-value=86 Score=37.01 Aligned_cols=203 Identities=16% Similarity=0.234 Sum_probs=107.3
Q ss_pred HhhHHHHHHHHhhCchHH------HHHHHHHhcccccccccchhhhH-HHhhhHHHHHHHHhcCCCCCHHHHhh-HHHHH
Q 003408 146 AHQEIMARLVDLIGITSI------MEVLIRLIGADEHMYTNFTESMQ-WIEDTNVLEMIVDKFSSSDSPEVHAN-AAETL 217 (822)
Q Consensus 146 ~~~~ivd~LlkHI~~~aI------mDlLlrLIt~de~~~~~~~~il~-WL~eq~LI~~Ll~~L~~s~s~ev~~N-aaeiL 217 (822)
+.++-+..|+..++.... +.+|-.|...... ...+ .|....=|.+|++.|+... ++..| +.-+|
T Consensus 119 ~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~------~~Q~~Il~~p~gi~~Lv~lL~d~r--E~iRneallLL 190 (651)
T 3grl_A 119 KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGP------QVQQIILVSPMGVSRLMDLLADSR--EVIRNDGVLLL 190 (651)
T ss_dssp HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHH------HHHHHHHHSTTHHHHHHGGGGCSS--HHHHHHHHHHH
T ss_pred cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcH------HHHHHHHhCcccHHHHHHHHhCch--HHHHHHHHHHH
Confidence 345677888887765421 1222222222111 1112 2344567899999997654 44444 66888
Q ss_pred HHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceec--cceeeeeecccccccccchhh-hhcccccCCCccccCch
Q 003408 218 CSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLV--NSLSICISLLDPKRLTLGTYY-MFNRQLTHGSTVTVNPE 294 (822)
Q Consensus 218 ~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lv--n~lsIli~LL~~~r~n~s~y~-~~~~~l~~~~~~~~~pe 294 (822)
++|.+-.++ +..-+.-+..+++||+++-..+..+..+| -++.++..|++ .|.+ .+ .|+..
T Consensus 191 ~~Lt~~n~~-iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr---~N~s-NQ~~FrEt------------ 253 (651)
T 3grl_A 191 QALTRSNGA-IQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLK---NNNS-NQNFFKEG------------ 253 (651)
T ss_dssp HHHHTTCHH-HHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT---TCHH-HHHHHHHT------------
T ss_pred HHHhcCCHH-HHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh---cCHH-HHHHHHHc------------
Confidence 888876542 22223335678999998876543222222 24556666764 2311 11 11110
Q ss_pred hhHhHHHhHHHHHHhhccCccccccccccCcccCCCcchhhH----HHHHHHHHHhcCc-----HHHHHHHHHhhhHHHH
Q 003408 295 TVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLK----IVEFISVLLTVGS-----EAAEKELIRHGAVRRI 365 (822)
Q Consensus 295 ~l~~il~~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLK----IvELIa~LL~~nn-----~~i~~~Li~~~ii~~L 365 (822)
. .++.|..+|..... . ......|+. ++++|..|+.-++ ..-.+.+++.|++..+
T Consensus 254 ---~---~i~~L~~LL~~~~~-~----------~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~L 316 (651)
T 3grl_A 254 ---S---YIQRMKPWFEVGDE-N----------SGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQL 316 (651)
T ss_dssp ---T---CGGGGGGGGCCCSC-S----------SCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHH
T ss_pred ---C---CHHHHHHHhCCCcc-c----------cccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHH
Confidence 1 12223344432211 1 111222333 4555666665533 2345678999999999
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHh
Q 003408 366 LDLFFEYPYNNFLHHHVENIILSCL 390 (822)
Q Consensus 366 LdLFFkYpwNNfLH~~Ve~II~~il 390 (822)
+.+-|....-.-+-......+..++
T Consensus 317 l~ll~~~~~p~~i~~~Al~tla~~i 341 (651)
T 3grl_A 317 CTILMATGVPADILTETINTVSEVI 341 (651)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCHHHHHHHHHHHHHHH
Confidence 9998876555556566666666555
No 13
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=70.04 E-value=1.4e+02 Score=33.18 Aligned_cols=181 Identities=12% Similarity=0.173 Sum_probs=97.7
Q ss_pred hHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceeccceeeeee
Q 003408 185 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICIS 264 (822)
Q Consensus 185 l~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~lsIli~ 264 (822)
.+.+.+.+++++|+.+|.. .+..++.++...|..|....+ .....++ +. .++..++.
T Consensus 267 ~~~i~~~g~i~~Lv~lL~~-~~~~v~~~al~aL~nl~~~~~----------~~~~~i~----~~--------g~l~~L~~ 323 (510)
T 3ul1_B 267 IEMVVKKGVVPQLVKLLGA-TELPIVTPALRAIGNIVTGTD----------EQTQKVI----DA--------GALAVFPS 323 (510)
T ss_dssp HHHHHTTTCHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSCH----------HHHHHHH----HT--------TGGGGCC-
T ss_pred HHHHHhcccchhhhhhhcC-CChhhhhHHHHHHHHhhcCCH----------HHHHHHh----hc--------cchHHHHH
Confidence 3445667889999988865 456778888888887765432 1112222 21 23455666
Q ss_pred cccccccccchhhhh--cccccCCCccccCchhhHhHHH--hHHHHHHhhccCccccccccccCcccCCCcchhhHHHHH
Q 003408 265 LLDPKRLTLGTYYMF--NRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEF 340 (822)
Q Consensus 265 LL~~~r~n~s~y~~~--~~~l~~~~~~~~~pe~l~~il~--~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIvEL 340 (822)
||....... ..... -.++ ...++.....+.. -++.++.+|.... -..|...+..
T Consensus 324 LL~~~~~~v-~~~A~~aL~nl-----~a~~~~~~~~v~~~g~i~~Lv~lL~~~~----------------~~v~~~Aa~a 381 (510)
T 3ul1_B 324 LLTNPKTNI-QKEATWTMSNI-----TAGRQDQIQQVVNHGLVPFLVGVLSKAD----------------FKTQKEAAWA 381 (510)
T ss_dssp CTTCSSHHH-HHHHHHHHHHH-----TTSCHHHHHHHHHTTHHHHHHHHHHSSC----------------HHHHHHHHHH
T ss_pred HhcCCCHHH-HHHHHHHHHHH-----HcCcHHHHHHHHhcCCHHHHHHHHcCCC----------------HHHHHHHHHH
Confidence 664211100 00000 0011 1112222222222 2334555554321 1356677888
Q ss_pred HHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhc----CCChHHHHHHhhhcchHHHHH
Q 003408 341 ISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE----CKNAPLIEHLLHECNLVGKIL 412 (822)
Q Consensus 341 Ia~LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile----~~n~~L~~~Lf~~~~Li~rIl 412 (822)
|..|....+......|++.|+++.|++|.- .+ +.-+-..+.+.+..|+. .....-...+|.+|..+++|-
T Consensus 382 L~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~-~~-d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie 455 (510)
T 3ul1_B 382 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AK-DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIE 455 (510)
T ss_dssp HHHHHHHCCHHHHHHHHHTTCHHHHHHGGG-CS-CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHCCCHHHHHHHhc-CC-CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHH
Confidence 888887777666678999999999999863 33 33444445555555553 123444556777777777653
No 14
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=66.59 E-value=65 Score=33.82 Aligned_cols=159 Identities=14% Similarity=0.184 Sum_probs=91.1
Q ss_pred hhhHHHHHHHH-hcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceeccceeeeeeccc
Q 003408 189 EDTNVLEMIVD-KFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLD 267 (822)
Q Consensus 189 ~eq~LI~~Ll~-~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~lsIli~LL~ 267 (822)
.+.+.++.|+. +|. +.++++...|+..|..|..-.+. ..+.+.....+..|+..+-.. ...++..+++..+-.|.+
T Consensus 78 ~~~G~l~~Lv~~lL~-s~~~~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g~l~~Ll~LL~~~-~~~~v~~~A~~ALsnl~~ 154 (296)
T 1xqr_A 78 CQLSGMHLLVGRYLE-AGAAGLRWRAAQLIGTCSQNVAA-IQEQVLGLGALRKLLRLLDRD-ACDTVRVKALFAISCLVR 154 (296)
T ss_dssp HHTTHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHc
Confidence 34556778888 665 56789999999999999875432 222333334455555433221 111222222222222221
Q ss_pred ccccccchhhhhcccccCCCccccCchhhHhHHH--hHHHHHHhhccCccccccccccCcccCCCcchhhHHHHHHHHHH
Q 003408 268 PKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLL 345 (822)
Q Consensus 268 ~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il~--~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIvELIa~LL 345 (822)
.++.....+.. -++-|+++|..+. -..|.+.+-+|+.|.
T Consensus 155 -----------------------~~~~~~~~~~~~ggi~~L~~lL~~~d----------------~~v~~~A~~aLs~L~ 195 (296)
T 1xqr_A 155 -----------------------EQEAGLLQFLRLDGFSVLMRAMQQQV----------------QKLKVKSAFLLQNLL 195 (296)
T ss_dssp -----------------------TCHHHHHHHHHTTHHHHHHHHHHSSC----------------HHHHHHHHHHHHHHH
T ss_pred -----------------------CCcHHHHHHHHCCCHHHHHHHHcCCC----------------HHHHHHHHHHHHHHH
Confidence 11221222211 2344555554321 146778899999998
Q ss_pred hcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhcC
Q 003408 346 TVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLEC 392 (822)
Q Consensus 346 ~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile~ 392 (822)
..+ ......+++.|+++.|+.|. +.+ +.-++.++..+|..|+..
T Consensus 196 ~~~-~~~~~~vv~~g~i~~Lv~LL-~~~-d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 196 VGH-PEHKGTLCSMGMVQQLVALV-RTE-HSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHC-GGGHHHHHHTTHHHHHHHHH-TSC-CSTHHHHHHHHHHHHHTT
T ss_pred hCC-hHHHHHHHHcCCHHHHHHHH-cCC-ChhHHHHHHHHHHHHHhC
Confidence 874 34457889999999999985 444 566777777777777753
No 15
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=64.75 E-value=2e+02 Score=32.88 Aligned_cols=297 Identities=13% Similarity=0.107 Sum_probs=150.3
Q ss_pred cHHHHHHHHHHhhcCCCcchHhhhccccccchhhh---hccchHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHH
Q 003408 51 ERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEI---FTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSK 127 (822)
Q Consensus 51 kpe~lekLI~YI~~e~~ed~e~k~~~Kyp~iAsEI---Lssdv~~I~d~Lvede~lL~~L~sfL~~~~~ln~llAgyFsK 127 (822)
.+..+..|++.+.... +.+.++ -|+.. |+.+. .....+++. ..+..|..+|.+.. +.+--+-.+
T Consensus 54 ~~~~i~~Lv~~L~~~~--~~~~~~------~A~~~L~~Ls~~~-~~~~~i~~~-g~i~~Lv~lL~~~~---~~v~~~A~~ 120 (644)
T 2z6h_A 54 SPQMVSAIVRTMQNTN--DVETAR------CTAGTLHNLSHHR-EGLLAIFKS-GGIPALVKMLGSPV---DSVLFYAIT 120 (644)
T ss_dssp CHHHHHHHHHHHHSCC--CHHHHH------HHHHHHHHHTTSH-HHHHHHHTT-THHHHHHHHTTCSS---HHHHHHHHH
T ss_pred ccChHHHHHHHHhcCC--CHHHHH------HHHHHHHHHhcCh-hhHHHHHHc-CCHHHHHHHHhCCC---HHHHHHHHH
Confidence 3456777888776532 222111 12332 23332 234444544 67888888887653 334444456
Q ss_pred HHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCchHH------HHHHHHHhcccccccccchhhhHHHhhhHHHHHHHHhc
Q 003408 128 VVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSI------MEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKF 201 (822)
Q Consensus 128 Iv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~~aI------mDlLlrLIt~de~~~~~~~~il~WL~eq~LI~~Ll~~L 201 (822)
++..|...... ....+.. ...+..|++.+..... +..|-.| ..... ....-+.+.+.++.|+..|
T Consensus 121 aL~nL~~~~~~-~~~~v~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L-a~~~~------~~~~~i~~~g~v~~Lv~lL 191 (644)
T 2z6h_A 121 TLHNLLLHQEG-AKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQIL-AYGNQ------ESKLIILASGGPQALVNIM 191 (644)
T ss_dssp HHHHHHHHSTT-HHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHHHHHHH-HTTCH------HHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHhCcch-hHHHHHH-CCChHHHHHHHCcCCHHHHHHHHHHHHHH-HhcCc------HHHHHHHHcCChHHHHHHH
Confidence 66666655322 2222222 3577778887755321 1222222 22111 1122344567899999999
Q ss_pred CCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceeccceeeeeecccccccccchhhhhcc
Q 003408 202 SSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNR 281 (822)
Q Consensus 202 ~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~lsIli~LL~~~r~n~s~y~~~~~ 281 (822)
..........+++.+|+.|..... ....+.....+..|+..+-.. ...+..+++.++-.|-+.
T Consensus 192 ~~~~~~~~~~~a~~~L~nLs~~~~--~~~~l~~~g~l~~L~~ll~~~--~~~~~~~a~~~L~nL~~~------------- 254 (644)
T 2z6h_A 192 RTYTYEKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDA------------- 254 (644)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTCTT--HHHHHHHTTHHHHHHTTTTCS--CHHHHHHHHHHHHHHGGG-------------
T ss_pred HcCChHHHHHHHHHHHHHHhcCcc--cHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhhc-------------
Confidence 877777777888888887764322 122222333444444432221 112222222222222100
Q ss_pred cccCCCccccCchhhHhHHHhHHHHHHhhccCccccccccccCcccCCCcchhhHHHHHHHHHHhcCcHHHHHHHHHhhh
Q 003408 282 QLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGA 361 (822)
Q Consensus 282 ~l~~~~~~~~~pe~l~~il~~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIvELIa~LL~~nn~~i~~~Li~~~i 361 (822)
.. ..+.+.. .+..|+++|.... ...|...+..+..|... +....+.+++.|.
T Consensus 255 ----~~----~~~~~~~---~i~~Lv~lL~~~d----------------~~v~~~a~~aL~~L~~~-~~~~~~~v~~~g~ 306 (644)
T 2z6h_A 255 ----AT----KQEGMEG---LLGTLVQLLGSDD----------------INVVTCAAGILSNLTCN-NYKNKMMVCQVGG 306 (644)
T ss_dssp ----CT----TCCSCHH---HHHHHHHHTTCSC----------------HHHHHHHHHHHHHHHTT-CHHHHHHHHHTTH
T ss_pred ----ch----hhhhhhh---HHHHHHHHHcCCC----------------HHHHHHHHHHHHHHHcC-CHHHHHHHHHcCC
Confidence 00 0111222 3445566664221 24677788888777553 4445567888999
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHhcC-CChHHHHHHhhhcchHHHHHHH
Q 003408 362 VRRILDLFFEYPYNNFLHHHVENIILSCLEC-KNAPLIEHLLHECNLVGKILEA 414 (822)
Q Consensus 362 i~~LLdLFFkYpwNNfLH~~Ve~II~~ile~-~n~~L~~~Lf~~~~Li~rIlea 414 (822)
++.|+.+....+-+.-+......++..+... ......+..+.++..+..+++.
T Consensus 307 v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~l 360 (644)
T 2z6h_A 307 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 360 (644)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHT
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHH
Confidence 9999999877543233333444444444422 2233344445556667777654
No 16
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1
Probab=62.23 E-value=1.9 Score=44.75 Aligned_cols=17 Identities=18% Similarity=0.460 Sum_probs=1.9
Q ss_pred ccCCCCCCCCCCCCCCC
Q 003408 731 IDENPSSKPSEPSESGS 747 (822)
Q Consensus 731 ~~~~~~~~p~~~~~~~~ 747 (822)
..++....|..|++|..
T Consensus 213 ~~~~~~~~p~~~~~~~~ 229 (268)
T 1wcz_A 213 INFANDDQPNNPDNPDN 229 (268)
T ss_dssp CCBC-------------
T ss_pred cccCCccCCCCCCCCCC
Confidence 44555555554443333
No 17
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=59.61 E-value=80 Score=29.81 Aligned_cols=115 Identities=14% Similarity=0.121 Sum_probs=65.2
Q ss_pred HHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCch--HHHHHHHHHhcccccccc
Q 003408 102 ELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGIT--SIMEVLIRLIGADEHMYT 179 (822)
Q Consensus 102 ~lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~~--aImDlLlrLIt~de~~~~ 179 (822)
..+..|..+|... ++...-.-+.++.+|...... ....+.. .+.+..|++.+... .+..--...+..--..
T Consensus 54 g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~-~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-- 126 (210)
T 4db6_A 54 GALPALVQLLSSP---NEQILQEALWALSNIASGGNE-QIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASG-- 126 (210)
T ss_dssp THHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHH-HHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--
T ss_pred CCHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCcH-HHHHHHH-CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC--
Confidence 4567777888764 344444445566666543332 2233332 35667777776543 2322222222110000
Q ss_pred cchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCc
Q 003408 180 NFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAP 225 (822)
Q Consensus 180 ~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~sp 225 (822)
.....+-+.+.++++.|+..|... +..++.+|+..|..|...++
T Consensus 127 -~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 127 -GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGN 170 (210)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCH
T ss_pred -CHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCc
Confidence 011233345778999999999764 78899999999999987644
No 18
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=57.99 E-value=2.3e+02 Score=31.44 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=25.8
Q ss_pred HHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCc
Q 003408 187 WIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAP 225 (822)
Q Consensus 187 WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~sp 225 (822)
.+.+.+.++.|+.+|. +.+..++..|+..|+.|....+
T Consensus 311 ~i~~~g~l~~L~~LL~-~~~~~v~~~A~~aL~nl~a~~~ 348 (510)
T 3ul1_B 311 KVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQ 348 (510)
T ss_dssp HHHHTTGGGGCC-CTT-CSSHHHHHHHHHHHHHHTTSCH
T ss_pred HHhhccchHHHHHHhc-CCCHHHHHHHHHHHHHHHcCcH
Confidence 3445566666666664 4567888999999999876543
No 19
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=55.95 E-value=91 Score=29.40 Aligned_cols=156 Identities=12% Similarity=0.146 Sum_probs=85.6
Q ss_pred hhHHHHhhcHHHHHHHHHHhhcCCCcchHhhhccccccchhhhhc---cchHHHHHHhhcCHHHHHHHHhhcCCCCCCCh
Q 003408 43 GRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFT---CEVDIILKTLVEDEELMNLLFSFLEPKDSHST 119 (822)
Q Consensus 43 ~kLIdFL~kpe~lekLI~YI~~e~~ed~e~k~~~Kyp~iAsEILs---sdv~~I~d~Lvede~lL~~L~sfL~~~~~ln~ 119 (822)
......+.+...+..|++++.... .+-+ ..|+.+|+ .........+++ ...+..|..+|... ++
T Consensus 44 ~~~~~~i~~~g~i~~L~~lL~~~~---~~v~------~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~---~~ 110 (210)
T 4db6_A 44 NEQIQAVIDAGALPALVQLLSSPN---EQIL------QEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSP---NE 110 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSC---HHHH------HHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHTTCS---CH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCC---HHHH------HHHHHHHHHHhcCCcHHHHHHHH-CCCHHHHHHHHcCC---cH
Confidence 333344444456777777776542 1111 11344333 233333334432 24678888888765 34
Q ss_pred hhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCch--HHHHH----HHHHhcccccccccchhhhHHHhhhHH
Q 003408 120 LLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGIT--SIMEV----LIRLIGADEHMYTNFTESMQWIEDTNV 193 (822)
Q Consensus 120 llAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~~--aImDl----LlrLIt~de~~~~~~~~il~WL~eq~L 193 (822)
.+...-+.++.+|...... ....+.. .+.+..|++.+... .+..- |..|.... ......+.+.+.
T Consensus 111 ~v~~~a~~~L~~l~~~~~~-~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-------~~~~~~~~~~g~ 181 (210)
T 4db6_A 111 QILQEALWALSNIASGGNE-QIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGG-------NEQKQAVKEAGA 181 (210)
T ss_dssp HHHHHHHHHHHHHTTSCHH-HHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-------HHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHcCCHH-HHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-------cHHHHHHHHCCC
Confidence 4545556677776654333 3333332 35777777777543 23322 22232211 122345667789
Q ss_pred HHHHHHhcCCCCCHHHHhhHHHHHHHHH
Q 003408 194 LEMIVDKFSSSDSPEVHANAAETLCSIT 221 (822)
Q Consensus 194 I~~Ll~~L~~s~s~ev~~NaaeiL~~II 221 (822)
++.|+..+. +.+.+++.+|+..|..|.
T Consensus 182 i~~L~~ll~-~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 182 LEKLEQLQS-HENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHGGG-CSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHHHh
Confidence 999998887 467888889998887764
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=55.46 E-value=1.2e+02 Score=29.37 Aligned_cols=181 Identities=15% Similarity=0.184 Sum_probs=97.8
Q ss_pred HHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceeccceeeeeec
Q 003408 186 QWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISL 265 (822)
Q Consensus 186 ~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~lsIli~L 265 (822)
..+.+.+.|+.|+..|.... .+++..|+..|..|....+. ....+.....+..|+..+-. .. ..+...++..+-.|
T Consensus 48 ~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~lL~~-~~-~~v~~~a~~~L~~l 123 (252)
T 4db8_A 48 QAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQLLSS-PN-EQILQEALWALSNI 123 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHGGGC-SC-HHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHHcC-CC-HHHHHHHHHHHHHh
Confidence 34556788999999987654 88888999999888754332 22222223344444432222 11 11111222222111
Q ss_pred ccccccccchhhhhcccccCCCccccCchhhHhHHH--hHHHHHHhhccCccccccccccCcccCCCcchhhHHHHHHHH
Q 003408 266 LDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISV 343 (822)
Q Consensus 266 L~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il~--~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIvELIa~ 343 (822)
.. ..+.....++. -++.++++|..+. -..|...+..+..
T Consensus 124 ~~-----------------------~~~~~~~~~~~~~~i~~L~~lL~~~~----------------~~v~~~a~~~L~~ 164 (252)
T 4db8_A 124 AS-----------------------GGNEQIQAVIDAGALPALVQLLSSPN----------------EQILQEALWALSN 164 (252)
T ss_dssp TT-----------------------SCHHHHHHHHHTTHHHHHHHGGGCSC----------------HHHHHHHHHHHHH
T ss_pred hc-----------------------CCchHHHHHHHCCCHHHHHHHHhCCC----------------HHHHHHHHHHHHH
Confidence 10 01111122221 3445666664321 1467778888888
Q ss_pred HHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCCChHHHHHHhhhcchHHHHHHH
Q 003408 344 LLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEA 414 (822)
Q Consensus 344 LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile~~n~~L~~~Lf~~~~Li~rIlea 414 (822)
|...+ ......+++.|+++.|+.+.-. + +--+...+..++..+.. .+...... +.++..++.|++.
T Consensus 165 l~~~~-~~~~~~~~~~~~i~~L~~ll~~-~-~~~v~~~a~~~L~~l~~-~~~~~~~~-~~~~g~i~~L~~l 230 (252)
T 4db8_A 165 IASGG-NEQIQAVIDAGALPALVQLLSS-P-NEQILQEALWALSNIAS-GGNEQKQA-VKEAGALEKLEQL 230 (252)
T ss_dssp HTTSC-HHHHHHHHHTTCHHHHHHGGGC-S-SHHHHHHHHHHHHHHTT-SCHHHHHH-HHHTTHHHHHHTT
T ss_pred HHcCC-hHHHHHHHHCCCHHHHHHHHCC-C-CHHHHHHHHHHHHHHhc-CCHHHHHH-HHHCCcHHHHHHH
Confidence 87654 3445678889999999998753 3 44555555566666653 33443333 3456777777654
No 21
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=54.94 E-value=52 Score=38.85 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=88.4
Q ss_pred HHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCch--HHHH-HHHH
Q 003408 93 ILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGIT--SIME-VLIR 169 (822)
Q Consensus 93 I~d~Lvede~lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~~--aImD-lLlr 169 (822)
+.+.++.+++.+..|+++|+.... ..-=|=.+++..|+..++..+++.|...|.=+..|+.-++.+ .|-. -++-
T Consensus 113 ~~d~f~~~~~~i~~Ll~lL~~~df---~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallL 189 (651)
T 3grl_A 113 FTEIFIKQQENVTLLLSLLEEFDF---HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLL 189 (651)
T ss_dssp HHHHHHHSTHHHHHHHHHTTCCCH---HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHH
T ss_pred HHHHHHcCCccHHHHHHHhcCccH---HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHH
Confidence 668888899999999999986541 111244579999999999999999999999999999988643 2222 2333
Q ss_pred HhcccccccccchhhhHHHhhhHHHHHHHHhcCCC---CCHHHHhhHHHHHHHHHhcC
Q 003408 170 LIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSS---DSPEVHANAAETLCSITRSA 224 (822)
Q Consensus 170 LIt~de~~~~~~~~il~WL~eq~LI~~Ll~~L~~s---~s~ev~~NaaeiL~~IIr~s 224 (822)
|+..-.. ...+...+.-++.+++|++.+... ....++.-+..+|..|.+..
T Consensus 190 L~~Lt~~----n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N 243 (651)
T 3grl_A 190 LQALTRS----NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNN 243 (651)
T ss_dssp HHHHHTT----CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcC----CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcC
Confidence 3332222 234555666778899999988653 34566777778888888764
No 22
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=54.94 E-value=62 Score=36.49 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhcccccccccchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHH
Q 003408 161 TSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSIT 221 (822)
Q Consensus 161 ~aImDlLlrLIt~de~~~~~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~II 221 (822)
..|.++|+|++...+-.. .-.-.|+ ++++|.+|++.|++...-|+. .+-.+|..|+
T Consensus 135 qlVYe~llrfv~s~~f~~---~~~k~~i-d~~Fi~~Ll~lfdSeDpRERd-~LktiLhrIY 190 (449)
T 2npp_B 135 QLVYEFFLRFLESPDFQP---NIAKKYI-DQKFVLQLLELFDSEDPRERD-FLKTTLHRIY 190 (449)
T ss_dssp HHHHHHHHHHHTSTTCCS---TTGGGTS-CHHHHHHHHHTTTSSTHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCh---hhhhhhC-CHHHHHHHHHHcCCCChHHHH-HHHHHHHHHH
Confidence 468899999987643210 1112233 678999999999877766652 2333444443
No 23
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1
Probab=53.95 E-value=2.7 Score=43.66 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q 003408 774 TPSEPSESVDG 784 (822)
Q Consensus 774 ~~~~~~~~~~~ 784 (822)
.|..||+|..|
T Consensus 244 ~~~~~~~~~~~ 254 (268)
T 1wcz_A 244 NPDNPNNPDNP 254 (268)
T ss_dssp -----------
T ss_pred CcCCCCCCCCC
Confidence 33444444333
No 24
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=50.95 E-value=2.9e+02 Score=30.60 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=28.9
Q ss_pred HHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCc
Q 003408 186 QWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAP 225 (822)
Q Consensus 186 ~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~sp 225 (822)
+.+.+.+.++.|+.+|. +.+.+++..|+-.|+.|....+
T Consensus 329 ~~i~~~g~l~~L~~LL~-~~~~~i~~~a~~aL~nl~~~~~ 367 (529)
T 3tpo_A 329 QKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQ 367 (529)
T ss_dssp HHHHHTTGGGGHHHHTT-CSSHHHHHHHHHHHHHHHTSCH
T ss_pred HHHhhcccHHHHHHHHc-CCCHHHHHHHHHHHHHHhcccH
Confidence 44556677888887775 4567888899999999886543
No 25
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=48.76 E-value=67 Score=33.73 Aligned_cols=135 Identities=13% Similarity=0.187 Sum_probs=74.5
Q ss_pred hhhhhc---cchHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhh
Q 003408 82 ACEIFT---CEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLI 158 (822)
Q Consensus 82 AsEILs---sdv~~I~d~Lvede~lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI 158 (822)
|+.+|+ .+.+...+.+++. ..+..|+.+|.++. ++...---+..+.+|...++...-.|+.. +.+..|++.+
T Consensus 102 Aa~~Lg~ia~~n~~~~~~vv~~-g~l~~Ll~LL~~~~--~~~v~~~A~~ALsnl~~~~~~~~~~~~~~--ggi~~L~~lL 176 (296)
T 1xqr_A 102 AAQLIGTCSQNVAAIQEQVLGL-GALRKLLRLLDRDA--CDTVRVKALFAISCLVREQEAGLLQFLRL--DGFSVLMRAM 176 (296)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHHCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHC-CCHHHHHHHHccCC--CHHHHHHHHHHHHHHHcCCcHHHHHHHHC--CCHHHHHHHH
Confidence 444443 3444445555543 45677777776432 22222233446667766555544455542 3455555544
Q ss_pred Cch--HHHHHHHHHhcccccccccchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCc
Q 003408 159 GIT--SIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAP 225 (822)
Q Consensus 159 ~~~--aImDlLlrLIt~de~~~~~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~sp 225 (822)
... .+.--....|+.--. ...+..+.+.+.++++.|+.+|... +..++..|...|..|.+..+
T Consensus 177 ~~~d~~v~~~A~~aLs~L~~---~~~~~~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 177 QQQVQKLKVKSAFLLQNLLV---GHPEHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HSSCHHHHHHHHHHHHHHHH---HCGGGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHTTCH
T ss_pred cCCCHHHHHHHHHHHHHHHh---CChHHHHHHHHcCCHHHHHHHHcCC-ChhHHHHHHHHHHHHHhCCh
Confidence 322 111111111111000 0123456788899999999998765 67889999999999997754
No 26
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A
Probab=47.81 E-value=4 Score=42.46 Aligned_cols=53 Identities=21% Similarity=0.601 Sum_probs=3.2
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003408 729 KSIDENPSSKPSEPSESGSPSEPAESGTPSEPAESGTPSEPAESGTPSEPSESVDG 784 (822)
Q Consensus 729 ~s~~~~~~~~p~~~~~~~~p~~p~~p~~p~ep~~~~~~~~~~~~~~~~~~~~~~~~ 784 (822)
..+.++.+.+|.-|-.|..|-.|-+|.+|..|..|.+| .+|.+|..|-+|..|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 263 (274)
T 2o8l_A 211 EDINFANDDQPNNPDNPDNPNNPDNPNNPDNPNNPDEP---NNPDNPNNPDNPDNG 263 (274)
T ss_dssp TTCEEC--------------------------------------------------
T ss_pred hhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCC
Confidence 34556666666655544444444444444444444444 444344444444333
No 27
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=45.96 E-value=4.7e+02 Score=31.54 Aligned_cols=301 Identities=12% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCcchHhhhccccccchhhhhc--cchHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHH
Q 003408 52 RAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFT--CEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVV 129 (822)
Q Consensus 52 pe~lekLI~YI~~e~~ed~e~k~~~Kyp~iAsEILs--sdv~~I~d~Lvede~lL~~L~sfL~~~~~ln~llAgyFsKIv 129 (822)
+..+..|++++.....+....+. |+|-|. +.-+..-..++.+..++..|+.+|.+. ++.+.-.-.+++
T Consensus 376 ~~Lv~~l~~lL~~~~~d~~v~~~-------AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~---d~~i~~~al~~L 445 (810)
T 3now_A 376 LKLAEACRRFLIKPGKDKDIRRW-------AADGLAYLTLDAECKEKLIEDKASIHALMDLARGG---NQSCLYGVVTTF 445 (810)
T ss_dssp HHHHHHHHHHHHCSSCCSSHHHH-------HHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTT---CGGGHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHH-------HHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCC---ChHHHHHHHHHH
Q ss_pred HHHHhcC-------------------------------chhHHHHHHHhhHHHHHHHHhh--CchHHHHHHHHHhccccc
Q 003408 130 ICLLLRK-------------------------------TVPLMHYIKAHQEIMARLVDLI--GITSIMEVLIRLIGADEH 176 (822)
Q Consensus 130 ~~LL~rk-------------------------------~~e~l~fL~~~~~ivd~LlkHI--~~~aImDlLlrLIt~de~ 176 (822)
.+|..-. ...-...+-.. ..+..|+..+ +.+.+.+-..+.+..--.
T Consensus 446 ~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea-GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~ 524 (810)
T 3now_A 446 VNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE-GITTALCALAKTESHNSQELIARVLNAVCG 524 (810)
T ss_dssp HHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT-THHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC-cCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Q ss_pred ccccchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhc-CChHHHHHHHHHHhcCCCCccee
Q 003408 177 MYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKI-SSPNFIGRLFRHALENSRPKSVL 255 (822)
Q Consensus 177 ~~~~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L-~S~e~I~~Ll~~il~~~~~~S~L 255 (822)
. ....+.+.+++.|+.|+..|.+. +...+.+|+..|..|...+.+...-.. ...+.|..|+. .|.........
T Consensus 525 d----~~~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~-LL~~~~~~l~~ 598 (810)
T 3now_A 525 L----KELRGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLN-LLQQDCTALEN 598 (810)
T ss_dssp S----HHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHH-TTSTTSCHHHH
T ss_pred C----HHHHHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHH-HhCCCCcHHHH
Q ss_pred ccceeeeeecccccccccchhhhhcccccCCCccccCchhhHhHHH--hHHHHHHhhccCccccccccccCcccCCCcch
Q 003408 256 VNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKH 333 (822)
Q Consensus 256 vn~lsIli~LL~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il~--~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~ 333 (822)
..++..+-.| ...+++....|+. -+..|..+|...... .
T Consensus 599 ~eAl~AL~NL-----------------------a~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~----------------V 639 (810)
T 3now_A 599 FESLMALTNL-----------------------ASMNESVRQRIIKEQGVSKIEYYLMEDHLY----------------L 639 (810)
T ss_dssp HHHHHHHHHH-----------------------TTSCHHHHHHHHHTTHHHHHHHHHHSCCTT----------------H
T ss_pred HHHHHHHHHH-----------------------hcCCHHHHHHHHHcCCHHHHHHHHcCCCHH----------------H
Q ss_pred hhHHHHHHHHHHhcCcHHHHHHHHH-hhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCCChHHHHHHhhhcchHHHHH
Q 003408 334 RLKIVEFISVLLTVGSEAAEKELIR-HGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKIL 412 (822)
Q Consensus 334 RLKIvELIa~LL~~nn~~i~~~Li~-~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile~~n~~L~~~Lf~~~~Li~rIl 412 (822)
|-..+++|..|.. +......+++ .|.++.|+.|.-. .+.-.....--.+..+..+ +...++.++...+.++.|+
T Consensus 640 q~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s--~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv 714 (810)
T 3now_A 640 TRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCED--EDEETATACAGALAIITSV-SVKCCEKILAIASWLDILH 714 (810)
T ss_dssp HHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGC--SSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHH
T ss_pred HHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcC--CCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHH
Q ss_pred H
Q 003408 413 E 413 (822)
Q Consensus 413 e 413 (822)
.
T Consensus 715 ~ 715 (810)
T 3now_A 715 T 715 (810)
T ss_dssp H
T ss_pred H
No 28
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=44.63 E-value=4e+02 Score=31.47 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=40.3
Q ss_pred chhhHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCCC
Q 003408 332 KHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKN 394 (822)
Q Consensus 332 ~~RLKIvELIa~LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile~~n 394 (822)
..|..++..+..|.. +......|.+.|.+..|+.|.- .=|.-+.......+..+...+.
T Consensus 608 ~v~~~a~~aL~~L~~--~~~~~~~i~~~g~i~~L~~Ll~--~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 608 NIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLH--SRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHHHHT--SHHHHHHHHHTTCHHHHHHGGG--CSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCh
Confidence 466667777777753 4556677888999999998743 3355666666677777775443
No 29
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=43.99 E-value=4.5e+02 Score=30.79 Aligned_cols=112 Identities=12% Similarity=0.128 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCc--hHHHHHHHHHhcccccccccchhhhHHHhhhHHHHHHHHhcCC
Q 003408 126 SKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI--TSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSS 203 (822)
Q Consensus 126 sKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~--~aImDlLlrLIt~de~~~~~~~~il~WL~eq~LI~~Ll~~L~~ 203 (822)
...+..+...-+.++-.|+.. +.++..+++.+.. +.+.+-.+.+++.--.. .+..+..|+ ..+++.|++.|..
T Consensus 607 l~~l~~l~~~l~~~~~~~~~~-~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~--~~~~~~~~l--~~~lp~l~~~l~~ 681 (852)
T 4fdd_A 607 LDLLSGLAEGLGGNIEQLVAR-SNILTLMYQCMQDKMPEVRQSSFALLGDLTKA--CFQHVKPCI--ADFMPILGTNLNP 681 (852)
T ss_dssp HHHHHHHHHHHGGGGHHHHHT-CCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--CGGGTGGGH--HHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHhHhHHHHhcC-CcHHHHHHHHhCCCChhHHHHHHHHHHHHHHH--hhHHHHHHH--HHHHHHHHHHcCc
Confidence 345555555445555555532 3566666665543 34444444444321100 011223333 2377888888844
Q ss_pred CCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHH
Q 003408 204 SDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHA 245 (822)
Q Consensus 204 s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~i 245 (822)
....+..||+..+.+|++.....+...+ ..++..|+.++
T Consensus 682 -~~~~v~~~a~~alg~i~~~~~~~~~p~~--~~il~~L~~~l 720 (852)
T 4fdd_A 682 -EFISVCNNATWAIGEISIQMGIEMQPYI--PMVLHQLVEII 720 (852)
T ss_dssp -TSHHHHHHHHHHHHHHHHHHGGGGGGGT--HHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHHHHHhhHhHHHHH--HHHHHHHHHHh
Confidence 3567778999999998765433333222 45666666644
No 30
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=40.42 E-value=3.9e+02 Score=29.00 Aligned_cols=169 Identities=14% Similarity=0.187 Sum_probs=81.1
Q ss_pred chhHHHHhhcHHHHHHHHHHhhcCCCcc-hHhhhccccccchhhhhccchHHHHHHhhcCH-HHHHHHHhhcCCCCCCCh
Q 003408 42 NGRLINFLRERAQVEQLIQYIVVEAPED-AEKRRTFKFPFVACEIFTCEVDIILKTLVEDE-ELMNLLFSFLEPKDSHST 119 (822)
Q Consensus 42 N~kLIdFL~kpe~lekLI~YI~~e~~ed-~e~k~~~Kyp~iAsEILssdv~~I~d~Lvede-~lL~~L~sfL~~~~~ln~ 119 (822)
...|..|+...+++.++++|+....=+- .+--.. --|+||..-....+.|-.|- .+...+-..|.+++ -
T Consensus 153 ~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~T------fkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~N---Y 223 (341)
T 1upk_A 153 HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFAT------FKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSEN---Y 223 (341)
T ss_dssp SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHH------HHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSS---H
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHH------HHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCc---c
Confidence 3444444444455666777766532110 010001 12555555555555555453 34455555565543 2
Q ss_pred hhhhhHHHHHHHHHhc-CchhHH-HHHHHhhHHHHHHHHhhCch--HH-HH-H-HHHHhcccccccccchhhhHHHhh--
Q 003408 120 LLAGYFSKVVICLLLR-KTVPLM-HYIKAHQEIMARLVDLIGIT--SI-ME-V-LIRLIGADEHMYTNFTESMQWIED-- 190 (822)
Q Consensus 120 llAgyFsKIv~~LL~r-k~~e~l-~fL~~~~~ivd~LlkHI~~~--aI-mD-l-LlrLIt~de~~~~~~~~il~WL~e-- 190 (822)
+.--.-.|.++-||.. ....+| .||.. ++-+..++.++... .| +| | ++|+..+.... ...+...|..
T Consensus 224 VTkRQSlKLLgelLldr~N~~vM~~Yis~-~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K---~~~I~~IL~~Nr 299 (341)
T 1upk_A 224 VTKRQSLKLLGELLLDRHNFTIMTKYISK-PENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK---TQPILDILLKNQ 299 (341)
T ss_dssp HHHHHHHHHHHHHHHSGGGHHHHHHHTTC-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC---CHHHHHHHHHTH
T ss_pred hhHHHHHHHHHHHHhCchHHHHHHHHhCC-HHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCC---ChHHHHHHHHHH
Confidence 2222224566665554 444444 55544 66778888877332 22 11 1 23443332211 2457777743
Q ss_pred hHHHHHHHHhcCCCC--CHHHHhhHHHHHHHHHhcC
Q 003408 191 TNVLEMIVDKFSSSD--SPEVHANAAETLCSITRSA 224 (822)
Q Consensus 191 q~LI~~Ll~~L~~s~--s~ev~~NaaeiL~~IIr~s 224 (822)
..||. .+..|.... ++.-..--+.++++|-.+.
T Consensus 300 ~kLl~-fl~~f~~d~~eDeqF~dEK~~lI~~I~~L~ 334 (341)
T 1upk_A 300 AKLIE-FLSKFQNDRTEDEQFNDEKTYLVKQIRDLK 334 (341)
T ss_dssp HHHHH-HHHHTTTTC-CCSHHHHHHHHHHHHHHTCC
T ss_pred HHHHH-HHHhCCCCCcchhhHHHHHHHHHHHHHhCC
Confidence 55555 446666544 3333333345777776553
No 31
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=37.42 E-value=4.2e+02 Score=28.51 Aligned_cols=298 Identities=12% Similarity=0.109 Sum_probs=147.2
Q ss_pred cHHHHHHHHHHhhcCCCcchHhhhccccccchhhhh---ccchHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHH
Q 003408 51 ERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIF---TCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSK 127 (822)
Q Consensus 51 kpe~lekLI~YI~~e~~ed~e~k~~~Kyp~iAsEIL---ssdv~~I~d~Lvede~lL~~L~sfL~~~~~ln~llAgyFsK 127 (822)
.+..+..|++.+.... +.+.+ ..|+..| +.+ ......+++. ..+..|..+|..+. +.+.-+-..
T Consensus 57 ~~~~i~~Lv~~L~~~~--~~~~~------~~a~~~L~~ls~~-~~~~~~i~~~-g~i~~L~~lL~~~~---~~v~~~a~~ 123 (529)
T 1jdh_A 57 SPQMVSAIVRTMQNTN--DVETA------RCTAGTLHNLSHH-REGLLAIFKS-GGIPALVKMLGSPV---DSVLFYAIT 123 (529)
T ss_dssp CHHHHHHHHHHHHHCC--CHHHH------HHHHHHHHHHTTS-HHHHHHHHHT-THHHHHHHHTTCSC---HHHHHHHHH
T ss_pred CcchHHHHHHHHhcCC--CHHHH------HHHHHHHHHHHcC-chhHHHHHHc-CCHHHHHHHHcCCC---HHHHHHHHH
Confidence 3456777777776432 21111 1233333 222 2233444443 57788888887653 334344456
Q ss_pred HHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCchH--HHHH---HHHHhcccccccccchhhhHHHhhhHHHHHHHHhcC
Q 003408 128 VVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITS--IMEV---LIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFS 202 (822)
Q Consensus 128 Iv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~~a--ImDl---LlrLIt~de~~~~~~~~il~WL~eq~LI~~Ll~~L~ 202 (822)
++..|....... ...+.. .+.+..|++.+.... +... .++.+..... +...-+.+.+.++.|+..|.
T Consensus 124 ~L~~l~~~~~~~-~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~------~~~~~i~~~~~i~~L~~ll~ 195 (529)
T 1jdh_A 124 TLHNLLLHQEGA-KMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ------ESKLIILASGGPQALVNIMR 195 (529)
T ss_dssp HHHHHHHHCTTH-HHHHHH-HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH------HHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHhcCCcch-HHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH------HHHHHHHHCCCHHHHHHHHH
Confidence 666666543221 222222 356777777775432 2221 2222222111 11233445577888888887
Q ss_pred CCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceeccceeeeeecccccccccchhhhhccc
Q 003408 203 SSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQ 282 (822)
Q Consensus 203 ~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~lsIli~LL~~~r~n~s~y~~~~~~ 282 (822)
..........++.+|..+..... ....+.....+..|+..+-.. ...+..+++.++..|-+.
T Consensus 196 ~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~g~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~~-------------- 257 (529)
T 1jdh_A 196 TYTYEKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDA-------------- 257 (529)
T ss_dssp HCCCHHHHHHHHHHHHHHTTSTT--HHHHHHHTTHHHHHHTTTTSS--CHHHHHHHHHHHHHHHTT--------------
T ss_pred hCChHHHHHHHHHHHHHHhcCcc--cHHHHHHCCCHHHHHHHHhCC--ChHHHHHHHHHHHHHhcC--------------
Confidence 76677777777777777764221 112222233444444322111 111111222211111100
Q ss_pred ccCCCccccCchhhHhHHHhHHHHHHhhccCccccccccccCcccCCCcchhhHHHHHHHHHHhcCcHHHHHHHHHhhhH
Q 003408 283 LTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAV 362 (822)
Q Consensus 283 l~~~~~~~~~pe~l~~il~~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIvELIa~LL~~nn~~i~~~Li~~~ii 362 (822)
.. ....+..+ ++.|+++|... =...|...+..+..|... +......+++.|.+
T Consensus 258 ---~~----~~~~~~~~---i~~L~~ll~~~----------------~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~v 310 (529)
T 1jdh_A 258 ---AT----KQEGMEGL---LGTLVQLLGSD----------------DINVVTCAAGILSNLTCN-NYKNKMMVCQVGGI 310 (529)
T ss_dssp ---CT----TCSCCHHH---HHHHHHHTTCS----------------CHHHHHHHHHHHHHHTTT-CHHHHHHHHHTTHH
T ss_pred ---Ch----hhHHHHhH---HHHHHHHHcCC----------------CHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCh
Confidence 00 01112223 44555666421 124567788888877553 44456678899999
Q ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHhcC-CChHHHHHHhhhcchHHHHHHH
Q 003408 363 RRILDLFFEYPYNNFLHHHVENIILSCLEC-KNAPLIEHLLHECNLVGKILEA 414 (822)
Q Consensus 363 ~~LLdLFFkYpwNNfLH~~Ve~II~~ile~-~n~~L~~~Lf~~~~Li~rIlea 414 (822)
+.++++.-...-+.-+......++..+... ....-....+.++..++.++..
T Consensus 311 ~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~l 363 (529)
T 1jdh_A 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 363 (529)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHH
Confidence 999999987655445555555555555432 2223233344456667766653
No 32
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=37.17 E-value=4e+02 Score=28.92 Aligned_cols=124 Identities=17% Similarity=0.300 Sum_probs=75.2
Q ss_pred HHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHh-hHHHHHHHHhhC--chHHHHHH
Q 003408 91 DIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAH-QEIMARLVDLIG--ITSIMEVL 167 (822)
Q Consensus 91 ~~I~d~Lvede~lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~~~-~~ivd~LlkHI~--~~aImDlL 167 (822)
..+...++.++. +.++|.+++... =.+.|.-| .++..||.+...-+-+||..+ ..|+..+-+.|. +...---=
T Consensus 154 e~la~~iL~~~~-f~~fF~yv~~~~--FdiasDAf-~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 154 EPLAKIILWSEQ-FYDFFRYVEMST--FDIASDAF-ATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp HHHHHHHHHSGG-GGHHHHHTTCSS--HHHHHHHH-HHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHhccHH-HHHHHHHhcCCC--chHHHHHH-HHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 344444444442 346666666532 22344444 477788888777777888765 345555555443 33333334
Q ss_pred HHHhc---ccccccccchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHh
Q 003408 168 IRLIG---ADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITR 222 (822)
Q Consensus 168 lrLIt---~de~~~~~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr 222 (822)
+||++ .|.. |..-+..|..+.+-+.-+..+|.. .+..++.-|..+++=.+.
T Consensus 230 lKLLgelLldr~---N~~vM~~Yis~~~nLkl~M~LL~d-~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 230 LKLLGELLLDRH---NFTIMTKYISKPENLKLMMNLLRD-KSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHHSGG---GHHHHHHHTTCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCch---HHHHHHHHhCCHHHHHHHHHHhcC-chhchhhhhhhheeeeee
Confidence 44444 2433 445577888888888777777754 467788888888887775
No 33
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=35.11 E-value=1.7e+02 Score=29.28 Aligned_cols=125 Identities=12% Similarity=0.097 Sum_probs=63.8
Q ss_pred hhhhHHHHHHHHHhcCchhHHHHHHHhhH---HH--------HHHHHhhCchHHHHHHHHHhcccccccccchhhhHHHh
Q 003408 121 LAGYFSKVVICLLLRKTVPLMHYIKAHQE---IM--------ARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIE 189 (822)
Q Consensus 121 lAgyFsKIv~~LL~rk~~e~l~fL~~~~~---iv--------d~LlkHI~~~aImDlLlrLIt~de~~~~~~~~il~WL~ 189 (822)
+--||-||...++.......++=|+..+. ++ +..-.++....+..-+++++.+==....-+ +- .+
T Consensus 9 lq~yf~~It~a~~~~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~--le--pY 84 (196)
T 4atg_A 9 LQLYFDKILSMIKSDMKDIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVF--ID--PY 84 (196)
T ss_dssp HHHHHHHHHHHHTSTTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCC--CG--GG
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCC--hH--HH
Confidence 44577777777776555555555555433 22 233345555555555555554311100000 11 12
Q ss_pred hhHHHHHHHHhcC-CCC-CHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCC
Q 003408 190 DTNVLEMIVDKFS-SSD-SPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRP 251 (822)
Q Consensus 190 eq~LI~~Ll~~L~-~s~-s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~ 251 (822)
=..+++-++.++- ..- ....-.-||.+|..|++...+. ...| .+..+..|.+..++..++
T Consensus 85 lH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~-y~~L-~~RI~~tl~k~l~dp~~~ 146 (196)
T 4atg_A 85 LHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRS-YKTL-APRVLKTLKGVWMDPNRS 146 (196)
T ss_dssp HHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTT-STTH-HHHHHHHHHHHHTCTTSC
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCcc-CchH-HHHHHHHHHHHHcCCCCC
Confidence 2457777776653 222 2256677889999998742210 0011 266666777666665443
No 34
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=24.98 E-value=5.3e+02 Score=27.43 Aligned_cols=249 Identities=14% Similarity=0.137 Sum_probs=122.0
Q ss_pred ccccchhhhhccchHHHHHHhhcCH--------HHHHHHHhhcCCC--------CCCChhhhhhHHHHHHHHHhcCchhH
Q 003408 77 KFPFVACEIFTCEVDIILKTLVEDE--------ELMNLLFSFLEPK--------DSHSTLLAGYFSKVVICLLLRKTVPL 140 (822)
Q Consensus 77 Kyp~iAsEILssdv~~I~d~Lvede--------~lL~~L~sfL~~~--------~~ln~llAgyFsKIv~~LL~rk~~e~ 140 (822)
|.|...-+-++.-+|.|.+.-+..+ ..+..|..+|..+ ...++.+--+-+.++.+|... ....
T Consensus 40 ~~~~~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~-~~~~ 118 (354)
T 3nmw_A 40 PMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG-DVAN 118 (354)
T ss_dssp CCCCGGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSS-CHHH
T ss_pred CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcC-CHHH
Confidence 3455544555545665555444321 1244455555321 011222333444566666543 3334
Q ss_pred HHHHHHhhHHHHHHHHhhCch--HHHHH---HHHHhcccccccccchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHH
Q 003408 141 MHYIKAHQEIMARLVDLIGIT--SIMEV---LIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAE 215 (822)
Q Consensus 141 l~fL~~~~~ivd~LlkHI~~~--aImDl---LlrLIt~de~~~~~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~Naae 215 (822)
-..|......+..|++.+... .+.+- .|+-++..... ...+-+.+.+.|+.|++.|..+.+.+++.+|+.
T Consensus 119 k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~-----~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~ 193 (354)
T 3nmw_A 119 KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV-----NSKKTLREVGSVKALMECALEVKKESTLKSVLS 193 (354)
T ss_dssp HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCH-----HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCH-----HHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHH
Confidence 445555566788888877543 33332 22333332110 112345567889999998766667888899999
Q ss_pred HHHHHHhcCchhHHhhcC-ChHHHHHHHHHHhcCCCCc--ceeccceeeeeecccccccccchhhhhcccccCCCccccC
Q 003408 216 TLCSITRSAPPALAAKIS-SPNFIGRLFRHALENSRPK--SVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVN 292 (822)
Q Consensus 216 iL~~IIr~spn~L~~~L~-S~e~I~~Ll~~il~~~~~~--S~Lvn~lsIli~LL~~~r~n~s~y~~~~~~l~~~~~~~~~ 292 (822)
.|..|....+. .-..+. ....|..|...+-...... .+..++..++-.| +.| +...
T Consensus 194 aL~nLs~~~~~-nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nL--------s~~------------~a~~ 252 (354)
T 3nmw_A 194 ALWNLSAHCTE-NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV--------SSL------------IATN 252 (354)
T ss_dssp HHHHHHTTCHH-HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHH--------HHH------------HTTC
T ss_pred HHHHHHccChh-hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHH--------Hhh------------ccCC
Confidence 99888763321 112222 3444444444332221100 0111111111111 000 0012
Q ss_pred chhhHhHHH--hHHHHHHhhccCccccccccccCcccCCCcchhhHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH
Q 003408 293 PETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLF 369 (822)
Q Consensus 293 pe~l~~il~--~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIvELIa~LL~~nn~~i~~~Li~~~ii~~LLdLF 369 (822)
++....|.. -+..|+++|..... ..|-..+..+..|-. ++....+.+++.|+++.|++|.
T Consensus 253 ~~~~~~i~~~g~i~~Lv~lL~~~~~----------------~v~~~A~~aL~nLa~-~~~~~~~~i~~~G~i~~Lv~LL 314 (354)
T 3nmw_A 253 EDHRQILRENNCLQTLLQHLKSHSL----------------TIVSNACGTLWNLSA-RNPKDQEALWDMGAVSMLKNLI 314 (354)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSCH----------------HHHHHHHHHHHHHTS-SCHHHHHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCh----------------HHHHHHHHHHHHHhC-CCHHHHHHHHHCCCHHHHHHHH
Confidence 333333332 35567777753221 144456666666643 3455567889999999888875
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=24.34 E-value=9.1e+02 Score=28.31 Aligned_cols=257 Identities=12% Similarity=0.100 Sum_probs=126.8
Q ss_pred HHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCch--HHHHH---HHHHhccccc
Q 003408 102 ELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGIT--SIMEV---LIRLIGADEH 176 (822)
Q Consensus 102 ~lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~~--aImDl---LlrLIt~de~ 176 (822)
..+..|..+|.... +.+--.-..++.+|...... ....+.. ...+..|++.+... .+... .++.+.....
T Consensus 234 g~I~~Lv~lL~~~~---~~v~~~A~~aL~nLa~~~~~-~~~~v~~-~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~ 308 (780)
T 2z6g_A 234 GGIPALVNMLGSPV---DSVLFHAITTLHNLLLHQEG-AKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 308 (780)
T ss_dssp THHHHHHHHTTCSC---HHHHHHHHHHHHHHHHHSTT-HHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHcCCC---HHHHHHHHHHHHHHhCCChh-hHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 45777888886642 33333334555555544322 2233322 34677777777432 22222 2223332111
Q ss_pred ccccchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceec
Q 003408 177 MYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLV 256 (822)
Q Consensus 177 ~~~~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lv 256 (822)
+...-+.+.+.++.|+..|.......+..+++.+|+.|.....+ ...+.....|..|+..+-.. ...+..
T Consensus 309 ------e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~--~~~i~~~g~l~~Ll~lL~~~--~~~~~~ 378 (780)
T 2z6g_A 309 ------ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN--KPAIVEAGGMQALGLHLTDP--SQRLVQ 378 (780)
T ss_dssp ------HHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTH--HHHHHHTTHHHHHGGGTTCS--CHHHHH
T ss_pred ------HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHH--HHHHHHhchHHHHHHHHcCC--chHHHH
Confidence 11222345577899999898777777777888888888753221 11222223333443322111 111111
Q ss_pred cceeeeeecccccccccchhhhhcccccCCCccccCchhhHhHHHhHHHHHHhhccCccccccccccCcccCCCcchhhH
Q 003408 257 NSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLK 336 (822)
Q Consensus 257 n~lsIli~LL~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il~~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLK 336 (822)
+++.++..|.+. .. .......+ +..|+++|... =...|..
T Consensus 379 ~a~~~L~~L~~~-----------------~~----~~~~~~~~---i~~Lv~lL~~~----------------d~~vr~~ 418 (780)
T 2z6g_A 379 NCLWTLRNLSDA-----------------AT----KQEGMEGL---LGTLVQLLGSD----------------DINVVTC 418 (780)
T ss_dssp HHHHHHHHHHTT-----------------CT----TCSCCHHH---HHHHHHHTTCS----------------CHHHHHH
T ss_pred HHHHHHHHHhcc-----------------ch----hhhhhhhH---HHHHHHHHcCC----------------CHHHHHH
Confidence 222222222110 00 01112223 33455555421 1246777
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhcC-CChHHHHHHhhhcchHHHHHHH
Q 003408 337 IVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLEC-KNAPLIEHLLHECNLVGKILEA 414 (822)
Q Consensus 337 IvELIa~LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile~-~n~~L~~~Lf~~~~Li~rIlea 414 (822)
++..+..|... +......+++.|.++.|+.+.....-..-.......++..+... ......+..+..+..+..|++.
T Consensus 419 A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~l 496 (780)
T 2z6g_A 419 AAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKL 496 (780)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHH
Confidence 88888877554 34445678889999999999886443223333334444444322 2223344455566777777764
No 36
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii}
Probab=24.16 E-value=26 Score=38.35 Aligned_cols=13 Identities=8% Similarity=-0.013 Sum_probs=7.5
Q ss_pred ccCCCccceeeec
Q 003408 554 YFDDESAEVVISS 566 (822)
Q Consensus 554 ~~~~~s~~~~~s~ 566 (822)
.|+|+...+++..
T Consensus 156 i~~DPT~ti~~~~ 168 (349)
T 2wd6_A 156 ASSDPTVTAWYND 168 (349)
T ss_dssp ECSSTTTCEEEEC
T ss_pred EecCCcceEEEEE
Confidence 4556666666644
No 37
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=21.33 E-value=5.6e+02 Score=24.76 Aligned_cols=70 Identities=13% Similarity=0.251 Sum_probs=36.4
Q ss_pred HHHHHHHhhCchHHHHHHHHHhcccccccccchhhhHHHhh---------------hHHHHHHHHhcCCCCCHHHHhhHH
Q 003408 150 IMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIED---------------TNVLEMIVDKFSSSDSPEVHANAA 214 (822)
Q Consensus 150 ivd~LlkHI~~~aImDlLlrLIt~de~~~~~~~~il~WL~e---------------q~LI~~Ll~~L~~s~s~ev~~Naa 214 (822)
.+..++..+....+++.|+..+....+ ..+..++.||.. ..+++.|+..|.. ...++-..|.
T Consensus 121 aL~~~~~~~~~~~ll~~l~~~l~~~~~--~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D-~~~~VR~~A~ 197 (242)
T 2qk2_A 121 AIDAIYASTSLEAQQESIVESLSNKNP--SVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNE-PDPTVRDSSA 197 (242)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTS-SCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcC-CChHHHHHHH
Confidence 344455555555555555555542211 123334444322 1456666666643 3456666777
Q ss_pred HHHHHHHh
Q 003408 215 ETLCSITR 222 (822)
Q Consensus 215 eiL~~IIr 222 (822)
+.|..|.+
T Consensus 198 ~~l~~l~~ 205 (242)
T 2qk2_A 198 EALGTLIK 205 (242)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777765
No 38
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=21.16 E-value=8.7e+02 Score=26.89 Aligned_cols=205 Identities=14% Similarity=0.128 Sum_probs=105.5
Q ss_pred hhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCc--hHHHHH---HHHHhcccccccccchhhhHHHhhhHHHH
Q 003408 121 LAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI--TSIMEV---LIRLIGADEHMYTNFTESMQWIEDTNVLE 195 (822)
Q Consensus 121 lAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~--~aImDl---LlrLIt~de~~~~~~~~il~WL~eq~LI~ 195 (822)
+--+-+.++.+|...+ ...-..+......+..|++.+.. ..+.+- .|+-++.... ....+.+.+.+.|+
T Consensus 216 l~~~Aa~aL~nLa~~~-~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~-----~~~k~~I~~~GaI~ 289 (458)
T 3nmz_A 216 LRRYAGMALTNLTFGD-VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD-----VNSKKTLREVGSVK 289 (458)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCC-----HHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhCCC-cccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHcCCHH
Confidence 3334456666666543 33344455555677888887753 333332 2223333111 11234456778999
Q ss_pred HHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcC-ChHHHHHHHHHHhcCCCCc--ceeccceeeeeecccccccc
Q 003408 196 MIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKIS-SPNFIGRLFRHALENSRPK--SVLVNSLSICISLLDPKRLT 272 (822)
Q Consensus 196 ~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~-S~e~I~~Ll~~il~~~~~~--S~Lvn~lsIli~LL~~~r~n 272 (822)
.|++.|..+.+..++.+|+..|..|...... .-..+. ....|..|...+-...... .+..++..++-.|
T Consensus 290 ~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~-nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nL------- 361 (458)
T 3nmz_A 290 ALMECALEVKKESTLKSVLSALWNLSAHCTE-NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV------- 361 (458)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHHHHHCHH-HHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHH-------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHccCCHH-HHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHH-------
Confidence 9999877767888999999999888763321 111222 2334444443332211100 0111111111111
Q ss_pred cchhhhhcccccCCCccccCchhhHhHHH--hHHHHHHhhccCccccccccccCcccCCCcchhhHHHHHHHHHHhcCcH
Q 003408 273 LGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSE 350 (822)
Q Consensus 273 ~s~y~~~~~~l~~~~~~~~~pe~l~~il~--~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIvELIa~LL~~nn~ 350 (822)
+.| +..+++....|.. -+..|+++|..... ..|-..+..+..|-. ++.
T Consensus 362 -s~~------------~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~----------------~v~~~A~~aL~nLa~-~~~ 411 (458)
T 3nmz_A 362 -SSL------------IATNEDHRQILRENNCLQTLLQHLKSHSL----------------TIVSNACGTLWNLSA-RNP 411 (458)
T ss_dssp -HHH------------HTTCHHHHHHHHHTTHHHHHHHHSSCSCH----------------HHHHHHHHHHHHHHS-SCH
T ss_pred -Hhc------------ccCCHHHHHHHHHcccHHHHHHHHcCCCh----------------HHHHHHHHHHHHHHc-CCH
Confidence 000 0112333333432 35567777753211 145566777777753 345
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 003408 351 AAEKELIRHGAVRRILDLF 369 (822)
Q Consensus 351 ~i~~~Li~~~ii~~LLdLF 369 (822)
.....+++.|+++.|++|.
T Consensus 412 ~~~~~i~~~G~I~~Lv~LL 430 (458)
T 3nmz_A 412 KDQEALWDMGAVSMLKNLI 430 (458)
T ss_dssp HHHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHH
Confidence 5567889999999998875
No 39
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=20.92 E-value=5.9e+02 Score=30.34 Aligned_cols=61 Identities=10% Similarity=0.076 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcccccccccchhhhHHHhh--hHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCch
Q 003408 162 SIMEVLIRLIGADEHMYTNFTESMQWIED--TNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPP 226 (822)
Q Consensus 162 aImDlLlrLIt~de~~~~~~~~il~WL~e--q~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn 226 (822)
+.+.++.+++.... ....+-+|+.. ..|+..++..+..........+++++|..|++..|.
T Consensus 848 s~~~fl~~~i~~~~----~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~~ 910 (971)
T 2x1g_F 848 NSIQFLTHFVMQSR----NHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYAA 910 (971)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC----chHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHCcH
Confidence 45566666665421 12234455544 456666666555555566667889999998876553
Done!