Query 003409
Match_columns 822
No_of_seqs 247 out of 1251
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 22:54:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1078 Vesicle coat complex C 100.0 1E-143 3E-148 1193.3 64.0 803 6-820 2-865 (865)
2 COG5240 SEC21 Vesicle coat com 100.0 2E-113 5E-118 917.8 53.1 792 19-818 13-896 (898)
3 KOG1077 Vesicle coat complex A 100.0 4.5E-97 1E-101 808.7 49.4 751 30-821 37-936 (938)
4 KOG1058 Vesicle coat complex C 100.0 3.3E-77 7.1E-82 657.6 42.6 734 32-820 24-939 (948)
5 PTZ00429 beta-adaptin; Provisi 100.0 2.8E-73 6.1E-78 666.9 46.1 481 19-517 23-541 (746)
6 KOG1062 Vesicle coat complex A 100.0 1.1E-72 2.5E-77 629.2 37.6 474 25-510 25-567 (866)
7 PF01602 Adaptin_N: Adaptin N 100.0 1.6E-64 3.5E-69 591.8 31.6 480 26-516 2-518 (526)
8 KOG1060 Vesicle coat complex A 100.0 8E-58 1.7E-62 506.8 39.7 450 28-490 35-536 (968)
9 KOG1061 Vesicle coat complex A 100.0 5.1E-58 1.1E-62 514.9 30.9 477 19-510 4-513 (734)
10 KOG1059 Vesicle coat complex A 100.0 4.2E-53 9.1E-58 465.8 31.7 473 28-510 36-563 (877)
11 COG5096 Vesicle coat complex, 100.0 8.4E-51 1.8E-55 466.0 32.4 670 28-792 18-749 (757)
12 PF08752 COP-gamma_platf: Coat 100.0 4.2E-40 9E-45 310.7 13.8 149 555-704 2-151 (151)
13 PF14806 Coatomer_b_Cpla: Coat 99.7 1.2E-17 2.5E-22 153.0 12.7 119 694-816 4-125 (129)
14 PF02296 Alpha_adaptin_C: Alph 99.7 1.6E-16 3.4E-21 144.9 11.6 106 707-818 1-113 (113)
15 PF01602 Adaptin_N: Adaptin N 99.4 4E-10 8.7E-15 132.3 32.4 391 85-491 26-448 (526)
16 PTZ00429 beta-adaptin; Provisi 99.1 2.6E-08 5.7E-13 118.9 30.5 328 50-390 84-446 (746)
17 PRK13800 putative oxidoreducta 98.9 1.6E-07 3.4E-12 116.8 26.5 258 109-407 624-893 (897)
18 PRK09687 putative lyase; Provi 98.9 1.7E-07 3.7E-12 100.4 22.5 241 106-408 23-277 (280)
19 PRK09687 putative lyase; Provi 98.8 1.4E-06 3.1E-11 93.4 23.1 204 77-303 30-235 (280)
20 PLN03200 cellulose synthase-in 98.7 1E-05 2.2E-10 104.3 32.1 407 75-485 409-906 (2102)
21 PRK13800 putative oxidoreducta 98.7 2.5E-06 5.4E-11 106.2 26.1 260 75-372 626-896 (897)
22 PF07718 Coatamer_beta_C: Coat 98.6 1.8E-07 3.9E-12 87.2 9.5 95 556-668 39-135 (140)
23 PLN03200 cellulose synthase-in 98.6 0.00017 3.7E-09 93.3 39.2 457 25-486 31-679 (2102)
24 PF12717 Cnd1: non-SMC mitotic 98.4 3.9E-06 8.4E-11 84.0 12.6 100 119-218 1-104 (178)
25 PF10508 Proteasom_PSMB: Prote 98.3 0.00043 9.4E-09 80.7 28.2 345 109-487 80-465 (503)
26 KOG1060 Vesicle coat complex A 98.2 0.00028 6E-09 81.6 24.8 256 115-380 44-355 (968)
27 KOG2171 Karyopherin (importin) 98.2 0.0031 6.7E-08 76.5 33.7 349 109-510 121-531 (1075)
28 PF10508 Proteasom_PSMB: Prote 98.2 0.00098 2.1E-08 77.8 29.1 262 50-316 58-362 (503)
29 KOG1059 Vesicle coat complex A 98.2 0.0016 3.6E-08 74.8 28.8 287 122-433 89-383 (877)
30 KOG1058 Vesicle coat complex C 98.1 0.00043 9.3E-09 79.7 23.1 326 85-434 40-409 (948)
31 KOG0212 Uncharacterized conser 98.1 0.0039 8.4E-08 70.1 29.7 356 56-419 71-486 (675)
32 KOG1078 Vesicle coat complex C 98.1 0.00059 1.3E-08 79.1 23.4 373 19-442 91-493 (865)
33 KOG0166 Karyopherin (importin) 98.0 0.0019 4.1E-08 73.3 24.8 239 109-376 112-394 (514)
34 KOG2171 Karyopherin (importin) 97.9 0.037 8.1E-07 67.5 35.8 339 50-394 100-527 (1075)
35 PF14764 SPG48: AP-5 complex s 97.9 0.0026 5.6E-08 71.3 24.5 106 400-505 284-414 (459)
36 KOG1062 Vesicle coat complex A 97.9 0.0075 1.6E-07 70.5 27.6 269 135-418 101-420 (866)
37 KOG0212 Uncharacterized conser 97.8 0.0075 1.6E-07 67.9 25.8 285 124-413 66-406 (675)
38 KOG1061 Vesicle coat complex A 97.8 0.001 2.2E-08 77.5 19.1 385 50-450 65-492 (734)
39 KOG0213 Splicing factor 3b, su 97.7 0.034 7.4E-07 64.4 29.0 133 71-204 442-582 (1172)
40 COG5096 Vesicle coat complex, 97.7 0.005 1.1E-07 73.1 22.3 134 50-187 71-209 (757)
41 PF14807 AP4E_app_platf: Adapt 97.6 0.00053 1.1E-08 61.4 10.3 96 709-819 1-99 (104)
42 KOG2023 Nuclear transport rece 97.6 0.021 4.5E-07 65.5 24.6 383 76-495 19-514 (885)
43 KOG1077 Vesicle coat complex A 97.5 0.33 7.2E-06 56.5 34.0 353 82-447 55-470 (938)
44 PF05804 KAP: Kinesin-associat 97.4 0.064 1.4E-06 64.3 27.0 283 109-422 293-615 (708)
45 PF13646 HEAT_2: HEAT repeats; 97.3 0.0009 1.9E-08 58.2 8.1 83 109-201 2-86 (88)
46 COG5240 SEC21 Vesicle coat com 97.3 0.072 1.6E-06 60.3 23.8 129 109-241 68-217 (898)
47 COG1413 FOG: HEAT repeat [Ener 97.2 0.061 1.3E-06 59.4 23.2 194 72-317 45-239 (335)
48 COG5181 HSH155 U2 snRNP splice 97.1 0.24 5.3E-06 56.6 26.0 130 77-207 253-390 (975)
49 COG1413 FOG: HEAT repeat [Ener 97.1 0.11 2.5E-06 57.2 23.7 200 106-353 43-255 (335)
50 KOG4224 Armadillo repeat prote 97.1 0.032 6.9E-07 59.9 17.6 271 77-375 92-405 (550)
51 KOG0166 Karyopherin (importin) 97.0 0.18 4E-06 57.6 24.5 274 50-346 87-399 (514)
52 KOG1020 Sister chromatid cohes 97.0 0.4 8.7E-06 60.2 27.8 128 83-210 793-924 (1692)
53 KOG0213 Splicing factor 3b, su 96.9 0.4 8.6E-06 56.1 25.4 241 25-283 634-912 (1172)
54 TIGR02270 conserved hypothetic 96.9 0.14 3.1E-06 57.9 22.2 245 120-412 39-295 (410)
55 KOG1241 Karyopherin (importin) 96.9 0.27 5.8E-06 57.8 24.0 429 42-504 230-732 (859)
56 KOG1824 TATA-binding protein-i 96.8 1.5 3.3E-05 52.9 30.2 306 102-429 813-1184(1233)
57 KOG2023 Nuclear transport rece 96.8 0.97 2.1E-05 52.5 27.6 308 79-394 57-445 (885)
58 PF09066 B2-adapt-app_C: Beta2 96.7 0.0079 1.7E-07 55.5 8.3 101 714-820 10-110 (114)
59 KOG2259 Uncharacterized conser 96.6 0.49 1.1E-05 54.8 23.4 306 106-429 158-527 (823)
60 KOG1824 TATA-binding protein-i 96.6 1.1 2.4E-05 54.0 26.7 201 289-495 816-1044(1233)
61 KOG2259 Uncharacterized conser 96.6 0.12 2.6E-06 59.5 18.3 251 252-508 196-533 (823)
62 PF12348 CLASP_N: CLASP N term 96.6 0.011 2.3E-07 61.6 9.6 171 38-208 16-207 (228)
63 PF04826 Arm_2: Armadillo-like 96.5 0.15 3.2E-06 53.9 18.0 158 117-281 24-203 (254)
64 cd00020 ARM Armadillo/beta-cat 96.2 0.024 5.1E-07 51.8 8.9 100 107-206 8-119 (120)
65 KOG0414 Chromosome condensatio 96.0 0.015 3.3E-07 70.6 8.0 147 70-220 919-1076(1251)
66 PF04826 Arm_2: Armadillo-like 96.0 0.37 7.9E-06 51.0 17.4 135 146-285 17-165 (254)
67 TIGR02270 conserved hypothetic 96.0 2 4.4E-05 48.7 24.3 198 107-374 87-295 (410)
68 PF12717 Cnd1: non-SMC mitotic 95.7 0.064 1.4E-06 53.6 10.0 55 154-208 1-55 (178)
69 PF05918 API5: Apoptosis inhib 95.5 1.5 3.2E-05 51.2 21.1 122 119-240 35-159 (556)
70 KOG1242 Protein containing ada 95.5 2.1 4.6E-05 49.6 21.9 229 142-378 175-447 (569)
71 PF12348 CLASP_N: CLASP N term 95.4 0.025 5.3E-07 58.8 5.9 121 60-181 85-217 (228)
72 COG5064 SRP1 Karyopherin (impo 95.3 3.7 8E-05 44.2 21.2 211 110-325 161-406 (526)
73 KOG0414 Chromosome condensatio 95.1 8.3 0.00018 48.1 26.1 142 69-210 269-431 (1251)
74 COG5064 SRP1 Karyopherin (impo 95.0 1.5 3.2E-05 47.1 17.2 275 72-374 73-397 (526)
75 PF13513 HEAT_EZ: HEAT-like re 94.7 0.1 2.2E-06 41.1 6.2 48 120-167 1-54 (55)
76 PF13646 HEAT_2: HEAT repeats; 94.7 0.075 1.6E-06 45.9 6.0 81 76-165 5-87 (88)
77 KOG1242 Protein containing ada 94.6 12 0.00025 43.8 24.5 135 178-316 295-440 (569)
78 KOG0915 Uncharacterized conser 94.6 2.5 5.4E-05 53.6 20.2 306 116-451 1008-1347(1702)
79 PF12755 Vac14_Fab1_bd: Vacuol 94.5 0.19 4.1E-06 44.9 8.2 65 135-199 21-89 (97)
80 PF02985 HEAT: HEAT repeat; I 94.4 0.051 1.1E-06 37.4 3.3 29 142-170 1-29 (31)
81 PF05918 API5: Apoptosis inhib 94.1 3.6 7.9E-05 48.0 19.3 235 248-505 53-320 (556)
82 cd00020 ARM Armadillo/beta-cat 94.0 0.34 7.4E-06 44.0 9.1 68 142-209 8-80 (120)
83 KOG1020 Sister chromatid cohes 93.5 31 0.00067 44.4 33.2 94 79-175 825-926 (1692)
84 PF12830 Nipped-B_C: Sister ch 93.4 0.34 7.4E-06 48.9 8.5 104 109-212 11-127 (187)
85 PF05804 KAP: Kinesin-associat 93.2 21 0.00045 43.4 24.4 147 265-413 260-441 (708)
86 cd00256 VATPase_H VATPase_H, r 93.1 18 0.00038 41.3 22.4 68 420-487 352-425 (429)
87 KOG2973 Uncharacterized conser 92.7 15 0.00032 39.5 19.3 80 109-190 6-94 (353)
88 PF10363 DUF2435: Protein of u 92.6 0.28 6E-06 43.3 5.7 66 109-174 6-76 (92)
89 COG5098 Chromosome condensatio 92.2 0.49 1.1E-05 54.9 8.5 135 73-210 895-1040(1128)
90 KOG2025 Chromosome condensatio 92.2 31 0.00067 41.1 25.9 65 253-317 125-190 (892)
91 COG5181 HSH155 U2 snRNP splice 92.1 12 0.00025 43.6 18.9 258 134-429 597-887 (975)
92 PF13513 HEAT_EZ: HEAT-like re 92.1 0.49 1.1E-05 37.1 6.1 49 155-203 1-53 (55)
93 KOG0946 ER-Golgi vesicle-tethe 91.2 36 0.00078 41.0 21.9 338 80-509 33-422 (970)
94 KOG4413 26S proteasome regulat 91.1 25 0.00055 37.9 24.4 201 254-488 213-440 (524)
95 KOG4199 Uncharacterized conser 91.0 27 0.00058 38.0 19.1 339 106-487 77-444 (461)
96 COG5098 Chromosome condensatio 90.6 2.2 4.8E-05 49.8 11.5 130 81-210 273-418 (1128)
97 smart00638 LPD_N Lipoprotein N 90.3 0.93 2E-05 54.1 9.0 98 109-208 449-546 (574)
98 KOG1240 Protein kinase contain 89.8 6.9 0.00015 48.8 15.3 95 318-413 585-685 (1431)
99 KOG1293 Proteins containing ar 89.6 22 0.00048 41.8 18.5 220 113-398 338-580 (678)
100 KOG0413 Uncharacterized conser 89.1 26 0.00055 43.0 18.7 97 110-206 580-684 (1529)
101 COG5215 KAP95 Karyopherin (imp 88.6 54 0.0012 38.1 21.7 123 252-394 595-730 (858)
102 PF12719 Cnd3: Nuclear condens 88.3 20 0.00044 38.8 16.7 136 345-505 25-163 (298)
103 KOG2025 Chromosome condensatio 87.1 75 0.0016 38.0 22.0 138 39-177 55-200 (892)
104 PF08713 DNA_alkylation: DNA a 87.0 1.1 2.4E-05 45.9 5.6 148 76-231 57-206 (213)
105 PF08713 DNA_alkylation: DNA a 86.9 2.5 5.5E-05 43.2 8.3 70 113-182 127-196 (213)
106 PF02883 Alpha_adaptinC2: Adap 86.9 10 0.00022 34.6 11.5 64 590-658 10-79 (115)
107 KOG1248 Uncharacterized conser 86.7 41 0.00088 42.4 19.1 99 109-207 656-767 (1176)
108 KOG2062 26S proteasome regulat 86.7 20 0.00044 42.7 15.8 145 318-470 526-676 (929)
109 PF01347 Vitellogenin_N: Lipop 86.6 2.4 5.1E-05 51.1 9.1 99 108-208 492-590 (618)
110 KOG1949 Uncharacterized conser 86.6 6.1 0.00013 46.5 11.5 141 135-283 167-331 (1005)
111 KOG4224 Armadillo repeat prote 86.3 17 0.00037 39.7 14.0 309 81-421 58-412 (550)
112 KOG0915 Uncharacterized conser 85.9 28 0.00061 44.8 17.4 74 318-392 1284-1361(1702)
113 KOG1293 Proteins containing ar 84.5 50 0.0011 39.0 17.6 106 115-220 428-546 (678)
114 PF12719 Cnd3: Nuclear condens 84.5 59 0.0013 35.2 17.9 111 253-375 26-143 (298)
115 PF12460 MMS19_C: RNAPII trans 84.2 83 0.0018 35.9 27.1 210 291-504 166-412 (415)
116 KOG2956 CLIP-associating prote 84.0 9 0.0002 43.2 11.0 143 25-170 283-477 (516)
117 KOG1525 Sister chromatid cohes 84.0 1.5E+02 0.0032 38.6 23.3 141 346-488 259-406 (1266)
118 KOG0413 Uncharacterized conser 82.3 50 0.0011 40.7 16.7 131 120-269 945-1078(1529)
119 KOG0211 Protein phosphatase 2A 81.5 1.4E+02 0.0031 36.7 26.8 364 134-509 230-649 (759)
120 KOG2759 Vacuolar H+-ATPase V1 81.5 99 0.0021 34.8 24.5 334 117-486 61-437 (442)
121 KOG1240 Protein kinase contain 80.3 9.7 0.00021 47.6 10.4 132 75-208 583-726 (1431)
122 KOG1525 Sister chromatid cohes 80.0 2E+02 0.0044 37.5 23.9 336 50-393 74-471 (1266)
123 KOG0567 HEAT repeat-containing 78.9 93 0.002 32.9 19.3 227 48-310 21-270 (289)
124 PF10363 DUF2435: Protein of u 77.7 21 0.00046 31.5 9.2 79 143-221 5-87 (92)
125 PF10633 NPCBM_assoc: NPCBM-as 77.1 9.9 0.00022 32.1 6.9 56 602-660 6-62 (78)
126 KOG0168 Putative ubiquitin fus 77.1 65 0.0014 39.3 15.4 163 324-488 181-365 (1051)
127 smart00809 Alpha_adaptinC2 Ada 76.5 51 0.0011 29.3 11.8 55 602-659 19-74 (104)
128 KOG1949 Uncharacterized conser 76.3 41 0.0009 40.0 13.3 94 105-198 173-283 (1005)
129 KOG2160 Armadillo/beta-catenin 75.2 33 0.00072 37.6 11.7 95 285-380 96-201 (342)
130 cd06561 AlkD_like A new struct 75.1 4.9 0.00011 40.4 5.3 76 144-220 108-183 (197)
131 KOG1222 Kinesin associated pro 74.4 1.7E+02 0.0036 33.6 19.8 67 142-210 346-416 (791)
132 PF14664 RICTOR_N: Rapamycin-i 74.1 96 0.0021 34.9 15.6 75 345-421 107-183 (371)
133 KOG1248 Uncharacterized conser 73.6 2.7E+02 0.0058 35.6 27.2 96 321-418 748-861 (1176)
134 KOG0168 Putative ubiquitin fus 73.4 2.3E+02 0.0049 34.9 18.5 171 108-281 169-362 (1051)
135 smart00638 LPD_N Lipoprotein N 73.4 64 0.0014 38.5 15.0 169 325-500 340-523 (574)
136 KOG4413 26S proteasome regulat 73.0 1.5E+02 0.0032 32.4 23.7 182 46-232 63-275 (524)
137 PF12755 Vac14_Fab1_bd: Vacuol 71.7 7 0.00015 34.8 4.8 26 290-315 26-51 (97)
138 KOG1943 Beta-tubulin folding c 71.3 2.9E+02 0.0062 35.0 26.3 366 121-507 398-816 (1133)
139 PF13251 DUF4042: Domain of un 71.2 35 0.00076 34.2 10.1 115 86-204 18-171 (182)
140 KOG1241 Karyopherin (importin) 71.0 2.5E+02 0.0054 34.1 29.7 381 106-499 90-543 (859)
141 KOG4199 Uncharacterized conser 69.0 99 0.0022 33.8 13.2 225 263-491 116-363 (461)
142 KOG4535 HEAT and armadillo rep 69.0 17 0.00037 41.1 7.8 126 81-207 23-179 (728)
143 cd03572 ENTH_epsin_related ENT 68.4 9.9 0.00021 35.4 5.1 48 135-182 32-79 (122)
144 PF11698 V-ATPase_H_C: V-ATPas 68.2 3.3 7.2E-05 38.2 2.0 68 420-487 42-115 (119)
145 KOG1943 Beta-tubulin folding c 68.0 3.3E+02 0.0072 34.4 25.1 72 135-206 335-408 (1133)
146 PF12765 Cohesin_HEAT: HEAT re 67.9 6.9 0.00015 29.1 3.2 23 141-163 18-40 (42)
147 COG1470 Predicted membrane pro 67.3 20 0.00044 40.6 8.0 57 602-661 398-455 (513)
148 KOG4653 Uncharacterized conser 66.5 94 0.002 38.0 13.6 64 114-177 735-804 (982)
149 KOG0211 Protein phosphatase 2A 66.3 2.6E+02 0.0056 34.5 17.7 234 141-379 398-670 (759)
150 KOG2274 Predicted importin 9 [ 64.7 3.6E+02 0.0077 33.6 23.9 350 131-510 80-545 (1005)
151 PF13251 DUF4042: Domain of un 64.3 1.6E+02 0.0035 29.5 13.8 115 185-315 47-169 (182)
152 KOG2062 26S proteasome regulat 63.1 65 0.0014 38.7 11.3 134 293-432 521-676 (929)
153 KOG1243 Protein kinase [Genera 62.0 23 0.0005 42.1 7.6 35 136-170 364-398 (690)
154 PF06685 DUF1186: Protein of u 61.5 1.8E+02 0.004 30.6 13.6 118 172-301 33-160 (249)
155 PF12530 DUF3730: Protein of u 59.8 2.2E+02 0.0048 29.6 18.2 49 364-413 102-151 (234)
156 cd06561 AlkD_like A new struct 59.5 33 0.00072 34.3 7.7 76 110-185 109-185 (197)
157 KOG1517 Guanine nucleotide bin 58.1 69 0.0015 40.0 10.7 140 67-206 509-670 (1387)
158 KOG3723 PH domain protein Melt 56.7 3.9E+02 0.0084 31.4 15.6 59 410-468 225-284 (851)
159 KOG2213 Apoptosis inhibitor 5/ 56.3 3.3E+02 0.0072 30.5 21.4 217 285-508 37-296 (460)
160 COG5218 YCG1 Chromosome conden 56.1 4.1E+02 0.0089 31.5 26.1 33 136-168 127-159 (885)
161 PF12830 Nipped-B_C: Sister ch 56.0 2E+02 0.0044 28.8 12.5 132 344-489 6-142 (187)
162 PF02985 HEAT: HEAT repeat; I 55.8 27 0.00059 23.7 4.3 30 347-376 1-30 (31)
163 KOG1991 Nuclear transport rece 54.6 5.4E+02 0.012 32.4 27.8 90 83-172 51-158 (1010)
164 PF08167 RIX1: rRNA processing 54.0 36 0.00078 33.4 6.6 118 67-186 22-159 (165)
165 PF12530 DUF3730: Protein of u 53.7 2.8E+02 0.0061 28.9 14.3 180 321-508 11-216 (234)
166 PF14500 MMS19_N: Dos2-interac 53.0 3.1E+02 0.0067 29.2 18.1 75 110-185 3-87 (262)
167 PF10274 ParcG: Parkin co-regu 53.0 31 0.00068 34.5 5.9 47 137-183 76-122 (183)
168 COG5116 RPN2 26S proteasome re 52.8 69 0.0015 37.3 9.1 67 436-505 600-669 (926)
169 PF11698 V-ATPase_H_C: V-ATPas 52.8 30 0.00065 32.1 5.3 28 142-169 87-114 (119)
170 COG5116 RPN2 26S proteasome re 52.6 1E+02 0.0022 36.0 10.3 34 346-379 551-585 (926)
171 PF08506 Cse1: Cse1; InterPro 52.0 21 0.00046 40.0 5.1 58 108-165 307-370 (370)
172 PF12231 Rif1_N: Rap1-interact 52.0 3.9E+02 0.0084 30.0 19.1 132 80-211 3-167 (372)
173 KOG2160 Armadillo/beta-catenin 51.9 2.4E+02 0.0053 31.1 12.9 118 261-378 131-285 (342)
174 PF01347 Vitellogenin_N: Lipop 51.6 2.8E+02 0.006 33.3 15.1 83 84-169 378-463 (618)
175 PF05536 Neurochondrin: Neuroc 49.6 2.9E+02 0.0062 32.8 14.2 50 325-374 71-127 (543)
176 KOG2753 Uncharacterized conser 48.8 1.5E+02 0.0033 32.4 10.4 120 344-489 14-137 (378)
177 PF14676 FANCI_S2: FANCI solen 48.5 74 0.0016 31.1 7.6 104 405-508 39-145 (158)
178 KOG1820 Microtubule-associated 47.0 2.1E+02 0.0046 35.5 12.8 76 135-210 247-327 (815)
179 KOG2933 Uncharacterized conser 46.6 36 0.00078 36.7 5.4 100 70-170 129-234 (334)
180 PF08167 RIX1: rRNA processing 46.3 1.6E+02 0.0036 28.8 9.9 34 382-418 115-148 (165)
181 PF02854 MIF4G: MIF4G domain; 46.0 1.7E+02 0.0036 29.0 10.3 82 331-413 3-84 (209)
182 PF14664 RICTOR_N: Rapamycin-i 45.7 1.3E+02 0.0028 33.8 10.1 108 80-189 35-158 (371)
183 KOG4500 Rho/Rac GTPase guanine 45.6 2E+02 0.0044 32.6 11.0 157 50-208 293-476 (604)
184 cd03569 VHS_Hrs_Vps27p VHS dom 45.3 57 0.0012 31.2 6.2 58 104-165 39-109 (142)
185 PF08506 Cse1: Cse1; InterPro 45.3 1.2E+02 0.0025 34.2 9.6 33 144-176 213-246 (370)
186 PF03130 HEAT_PBS: PBS lyase H 44.8 37 0.00081 22.4 3.4 26 122-147 1-26 (27)
187 KOG2140 Uncharacterized conser 44.6 1.2E+02 0.0025 35.2 9.1 123 329-452 165-312 (739)
188 KOG2032 Uncharacterized conser 44.5 1E+02 0.0023 35.3 8.8 98 110-207 262-371 (533)
189 COG5218 YCG1 Chromosome conden 43.2 6.4E+02 0.014 30.0 24.0 84 231-316 111-195 (885)
190 cd03567 VHS_GGA VHS domain fam 43.0 1.7E+02 0.0036 28.0 9.0 70 146-215 6-75 (139)
191 KOG2933 Uncharacterized conser 42.4 1.6E+02 0.0035 31.9 9.4 89 88-177 71-165 (334)
192 KOG0567 HEAT repeat-containing 41.5 1.7E+02 0.0038 31.0 9.3 90 110-207 158-249 (289)
193 PF05004 IFRD: Interferon-rela 41.4 3.8E+02 0.0081 29.3 12.7 162 114-278 51-252 (309)
194 PF00514 Arm: Armadillo/beta-c 41.2 60 0.0013 23.4 4.5 26 349-374 15-40 (41)
195 KOG2956 CLIP-associating prote 40.9 4.2E+02 0.0091 30.5 12.7 124 361-490 303-438 (516)
196 KOG1820 Microtubule-associated 40.8 4.8E+02 0.01 32.5 14.4 173 47-221 271-458 (815)
197 KOG1822 Uncharacterized conser 40.6 1.1E+03 0.024 32.1 18.2 101 106-206 876-987 (2067)
198 PF12074 DUF3554: Domain of un 40.3 5.4E+02 0.012 28.3 15.8 53 118-170 35-90 (339)
199 PF00514 Arm: Armadillo/beta-c 40.1 48 0.001 23.9 3.8 27 142-168 13-39 (41)
200 KOG4500 Rho/Rac GTPase guanine 39.4 6.3E+02 0.014 28.9 15.8 135 70-205 223-388 (604)
201 cd03561 VHS VHS domain family; 39.2 1.1E+02 0.0024 28.8 7.2 75 92-166 22-108 (133)
202 PF14225 MOR2-PAG1_C: Cell mor 38.8 5.1E+02 0.011 27.6 15.5 85 325-414 130-218 (262)
203 PF12074 DUF3554: Domain of un 38.6 5.7E+02 0.012 28.1 22.9 76 319-394 173-255 (339)
204 COG5215 KAP95 Karyopherin (imp 36.6 7.9E+02 0.017 29.2 24.1 136 73-208 266-438 (858)
205 PF05327 RRN3: RNA polymerase 35.6 2.7E+02 0.0058 33.2 11.2 101 291-394 15-122 (563)
206 cd03561 VHS VHS domain family; 35.2 1.8E+02 0.004 27.3 7.9 56 160-215 19-74 (133)
207 PF00790 VHS: VHS domain; Int 34.9 2.3E+02 0.0049 26.9 8.6 73 142-214 6-78 (140)
208 COG5657 CSE1 CAS/CSE protein i 34.7 2.8E+02 0.0061 34.4 10.8 76 318-414 77-153 (947)
209 KOG1517 Guanine nucleotide bin 34.2 2E+02 0.0042 36.3 9.4 127 46-172 573-734 (1387)
210 KOG4653 Uncharacterized conser 33.7 2.4E+02 0.0051 34.8 9.9 66 106-171 847-919 (982)
211 PF14500 MMS19_N: Dos2-interac 33.7 6.1E+02 0.013 27.0 17.5 48 346-393 208-256 (262)
212 PF12031 DUF3518: Domain of un 33.6 65 0.0014 33.6 4.8 25 324-348 137-162 (257)
213 cd07064 AlkD_like_1 A new stru 33.4 84 0.0018 32.1 5.7 134 77-219 53-191 (208)
214 cd03568 VHS_STAM VHS domain fa 31.8 4.2E+02 0.0091 25.4 9.8 53 347-400 81-135 (144)
215 PF11707 Npa1: Ribosome 60S bi 31.6 6.6E+02 0.014 27.6 12.8 70 108-177 58-150 (330)
216 PF14796 AP3B1_C: Clathrin-ada 31.4 98 0.0021 29.8 5.3 49 602-652 86-134 (145)
217 cd03569 VHS_Hrs_Vps27p VHS dom 30.8 3.3E+02 0.0072 26.0 9.0 66 143-208 6-71 (142)
218 PF09450 DUF2019: Domain of un 30.2 74 0.0016 28.9 4.0 39 145-186 51-89 (106)
219 smart00567 EZ_HEAT E-Z type HE 30.1 60 0.0013 21.7 2.7 25 121-145 2-26 (30)
220 PF02847 MA3: MA3 domain; Int 29.9 4E+02 0.0087 23.7 9.3 33 361-393 32-64 (113)
221 cd00197 VHS_ENTH_ANTH VHS, ENT 29.9 1.7E+02 0.0038 26.5 6.7 70 146-215 5-74 (115)
222 KOG0403 Neoplastic transformat 29.7 1.8E+02 0.0038 33.2 7.5 107 38-152 43-156 (645)
223 PF12460 MMS19_C: RNAPII trans 29.3 8.8E+02 0.019 27.5 25.7 165 343-508 186-378 (415)
224 smart00543 MIF4G Middle domain 29.2 5.5E+02 0.012 25.1 13.7 77 333-412 5-81 (200)
225 PF11864 DUF3384: Domain of un 28.7 9.6E+02 0.021 27.7 23.0 263 28-317 156-463 (464)
226 cd03564 ANTH_AP180_CALM ANTH d 28.3 3.5E+02 0.0077 24.6 8.5 94 144-242 3-110 (117)
227 PF11935 DUF3453: Domain of un 28.0 1.3E+02 0.0028 31.6 6.1 54 149-202 1-67 (239)
228 PF09624 DUF2393: Protein of u 28.0 1.9E+02 0.0042 27.6 6.9 30 597-627 58-87 (149)
229 PF11935 DUF3453: Domain of un 26.4 5.7E+02 0.012 26.7 10.6 50 345-394 113-164 (239)
230 smart00288 VHS Domain present 26.0 4.1E+02 0.0089 24.9 8.6 52 160-211 19-70 (133)
231 PF08389 Xpo1: Exportin 1-like 25.6 3.5E+02 0.0075 25.1 8.3 48 155-203 2-50 (148)
232 cd03568 VHS_STAM VHS domain fa 24.8 4.5E+02 0.0097 25.2 8.7 66 139-204 35-107 (144)
233 PF11614 FixG_C: IG-like fold 24.3 2E+02 0.0043 26.2 6.0 69 604-678 34-102 (118)
234 smart00288 VHS Domain present 24.2 2.2E+02 0.0048 26.7 6.4 75 91-165 21-106 (133)
235 PF11707 Npa1: Ribosome 60S bi 24.0 9.8E+02 0.021 26.2 18.9 86 180-272 58-151 (330)
236 PF04858 TH1: TH1 protein; In 23.9 6.6E+02 0.014 30.1 11.5 136 370-507 153-315 (584)
237 PF09759 Atx10homo_assoc: Spin 23.6 2.2E+02 0.0047 25.7 5.8 61 362-422 2-68 (102)
238 PF06371 Drf_GBD: Diaphanous G 23.6 1.5E+02 0.0033 29.2 5.5 57 268-339 130-186 (187)
239 cd03565 VHS_Tom1 VHS domain fa 23.2 2.8E+02 0.0061 26.5 6.9 38 359-396 99-137 (141)
240 KOG0803 Predicted E3 ubiquitin 22.9 1.4E+03 0.03 30.3 14.7 93 113-205 48-151 (1312)
241 PF14676 FANCI_S2: FANCI solen 22.9 5E+02 0.011 25.4 8.7 28 286-313 127-154 (158)
242 PF06685 DUF1186: Protein of u 22.3 9.4E+02 0.02 25.4 13.6 36 471-506 126-161 (249)
243 KOG2149 Uncharacterized conser 21.8 9.5E+02 0.021 27.1 11.4 108 258-381 62-176 (393)
244 PF11701 UNC45-central: Myosin 21.4 5.8E+02 0.013 24.7 8.9 135 146-281 8-157 (157)
245 PF13001 Ecm29: Proteasome sta 21.2 7.4E+02 0.016 29.0 11.3 166 321-490 247-446 (501)
246 COG5101 CRM1 Importin beta-rel 21.0 2.5E+02 0.0053 33.5 6.8 128 348-490 463-602 (1053)
247 PF09759 Atx10homo_assoc: Spin 21.0 1.5E+02 0.0033 26.7 4.2 25 151-175 40-64 (102)
248 smart00185 ARM Armadillo/beta- 20.7 1.5E+02 0.0032 20.7 3.6 27 142-168 13-39 (41)
249 cd03572 ENTH_epsin_related ENT 20.7 4E+02 0.0087 24.9 7.1 51 367-418 22-72 (122)
No 1
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-143 Score=1193.33 Aligned_cols=803 Identities=60% Similarity=0.931 Sum_probs=743.6
Q ss_pred ccCCCCcCCCcccCCcccchhhhHHHHHhhhcCCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCcc
Q 003409 6 VKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIG 85 (822)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~k~~~lqE~r~f~~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~ 85 (822)
+|||+|+++ .++||.+++|++++||+|.||++|++++||+.+|.||+|++.+|+.|++.|++.+||+|+|+|||+|..
T Consensus 2 ~~~~~~~~~--~s~~f~~l~k~~vlqe~r~fnespvn~r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~ 79 (865)
T KOG1078|consen 2 SKKDEEDGG--KSNVFQHLEKTTVLQEARTFNESPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVS 79 (865)
T ss_pred CccchhhcC--CCccccChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHH
Confidence 566655553 368999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 003409 86 LRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSG 165 (822)
Q Consensus 86 lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~ 165 (822)
+|||+|+++++++..++++++++|+++||++..++.+|+.|||+||+|.+..|.+.+++++++++.|++|.|+..|++..
T Consensus 80 LRr~vYl~Ikels~isedviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss 159 (865)
T KOG1078|consen 80 LRRMVYLAIKELSKISEDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSS 159 (865)
T ss_pred HHHHHHHHHhhccccchhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcc
Q 003409 166 IHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREA 245 (822)
Q Consensus 166 ~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~ 245 (822)
+||++.+++.+++|.+++++...+.+.||||||+++||+|+++|+.++.+++..+..+...+|++.|.++|+....+.+
T Consensus 160 ~hll~~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~drla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~- 238 (865)
T KOG1078|consen 160 YHLLPISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKE- 238 (865)
T ss_pred hhhhcccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccchhHHHHHHHHHHHHhhh-
Confidence 9999999999999999999999999999999999999999999999999999988877789999999999999987766
Q ss_pred cCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc--------
Q 003409 246 ATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK-------- 317 (822)
Q Consensus 246 ~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~-------- 317 (822)
++.....+++++..+|+|+..+|.|||+++++.+.+.....+.+++..|+.||+++++.+||+|+|+|++
T Consensus 239 --~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 239 --NQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred --cccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc
Confidence 4555667899999999999999999999999999877788899999999999999999999999999987
Q ss_pred ---------CcCCCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHH
Q 003409 318 ---------SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFL 388 (822)
Q Consensus 318 ---------~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l 388 (822)
.+++|.|++|.+.|+++|+++|+++|++++++++..|+.+++++||+.+|++|..||.+||.++..+++||
T Consensus 317 v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL 396 (865)
T KOG1078|consen 317 VTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFL 396 (865)
T ss_pred ccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCChHHHHHHHHhhcc
Q 003409 389 SNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVH 468 (822)
Q Consensus 389 ~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i~~~~~ 468 (822)
.++|+++|+++++.+++++|..++..+|+.++.++.+||++|+||+++++...+++++|+.|+..++|.+|+|+||||++
T Consensus 397 ~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRvi 476 (865)
T KOG1078|consen 397 SNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVI 476 (865)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhccccchHHHHHHHHHHhcCCCCC--------------------------------------
Q 003409 469 LENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDE-------------------------------------- 510 (822)
Q Consensus 469 ~e~~~vr~~~ltal~K~~~~~~~~~~~i~~ll~~~~~d~d~E-------------------------------------- 510 (822)
+|+..||+++++|++||++.++.++++|..+++||..|.|+|
T Consensus 477 LEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~~~l~~~~~~l~~s~~~le~~l~ 556 (865)
T KOG1078|consen 477 LENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKDDVLNQNYSGLFVSIPGLERSLV 556 (865)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhhhhhcccccccccccchhHHHHH
Confidence 999999999999999999999999999999999999999999
Q ss_pred ----CccCCCCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCchhhHhhhhcCCccccccCCccccCCceeeccc
Q 003409 511 ----EPAEQPFDINSVPKEVKTQPLAEKKAPGKMPAGLGAPPSGPPSTVDAYEKLLSSIPEFSDFGKLFKSSAPVELTEA 586 (822)
Q Consensus 511 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ip~~~~~g~~~~~s~~v~lte~ 586 (822)
+...++||+..+|...+.......... ..+....+........++|..+++.+|+|..+|++++|+.++.|||+
T Consensus 557 ~y~~~~~~~~fd~~~v~~~s~~~~~~~~~~~--k~~~~~~~~~~~~~~~d~~~~~l~~i~~~~~lgpl~kSs~~i~LTE~ 634 (865)
T KOG1078|consen 557 SYITGSFATPFDIKSVPVKSQAEEPAINLEL--KQTLVKAPEKEKIPKVDEYAAELASIPEFKALGPLFKSSRPIELTEP 634 (865)
T ss_pred HHhhccccccchhhcchhhcccccccccccc--cccccCCCcccCCCccchhHHHHhccchhhhcCccccccCcceeccc
Confidence 023344555555533322211111000 00000111222334457899999999999999999999999999999
Q ss_pred ccceEEEEEEEeecceEEEEEEeecCCCcccceeEEEEEecCCCCCceEEEeccCCCCCCCCCceEEEEEeeCCC--CCc
Q 003409 587 ETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKPEG--VPA 664 (822)
Q Consensus 587 e~ey~v~~~kh~~~~~ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~ip~~~L~~~~~~~~~v~~~~~~~--~~~ 664 (822)
|+||+|.|+||+|.+|+||||.|+||++||+|+|++|++.+.++ |.+...+|+++|||++++++|+.++.+.+ ..+
T Consensus 635 e~e~~v~~vKh~f~~~~V~qf~~~Ntl~d~~L~~v~vv~~~~~~--~evl~~i~~~slpy~qp~~~~tl~~~p~~~p~~v 712 (865)
T KOG1078|consen 635 EAEYVVKVVKHVFKDHVVLQFDCTNTLNDQLLENVSVVLTPTGG--EEVLEKVPTMSLPYDQPGSAFTLVEFPKDDPWAI 712 (865)
T ss_pred cceEEeeeeehhhccceEEEEeccCcchHHHHhhheeeecCCCC--ceeeeeccccCCCCCCCcceEEEEEcCCCCchhh
Confidence 99999999999999999999999999999999999999987766 88889999999999999999999988853 358
Q ss_pred eeeeeceeeeEEeeeCCCCCCCCCCCccceEEccceeecccccccccCcCchHHHHhhcCCCceeEEEEecCCCCcHHHH
Q 003409 665 VGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEA 744 (822)
Q Consensus 665 ~~~f~~~L~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~~dfi~p~~~~~F~~~W~~~~~~~e~~~~~~l~~~~~~~~a 744 (822)
+|+|+|+|+|+++||||+||+|+|+||+|||.|||++++++|||+|+..++|.+.|++++ .|.+++|.|+..+++++|
T Consensus 713 ~~sf~~tlkFtvkdcdp~TgepdedGyeDEY~LEdlevtv~D~iqkv~k~NF~aawde~~--~e~eetF~Ls~~~tl~eA 790 (865)
T KOG1078|consen 713 AEGFGNTLKFTVKDCDPNTGEPDDEGYEDEYVLEDLEVTVGDFVQKVRKSNFPAAWDELG--FEAEETFNLSTVKSIQEA 790 (865)
T ss_pred hccceeeEEEEEEecCCCCCCCCccCcccceeeeceeeehhhhhhHhhcccchhhHHhcC--cchheeeeccccchHHHH
Confidence 889999999999999999999999999999999999999999999999999999999997 678899999999999999
Q ss_pred HHHHHHhhCCcccCCCccccCCCccceEEEEEEEecCceEEEEEEEeecCCcceEEEEEEecCCcchHHHHHHHHh
Q 003409 745 VSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVA 820 (822)
Q Consensus 745 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ag~~~~~~~vl~~~~~~~~~~~~~~~~~~vRs~~~~v~~~v~~~~~ 820 (822)
+++|++.+||+||+++|.+|.+++.|+++++|+|+||++||++++++.+++ ||+++++|||+++.+++.+.+.+|
T Consensus 791 v~~Ii~~LgMqpcE~sd~vPenknsHtl~LsG~frgG~~vlvr~~ma~s~~-~vtm~Vtvrs~e~~~vd~Iva~v~ 865 (865)
T KOG1078|consen 791 VKKIIDLLGMQPCERTEKVPENKNSHTLLLSGVFRGGYKVLVRAKMALSSG-GITMKVTVRSEDELVVDLIVALVG 865 (865)
T ss_pred HHHHHHHhCCccccccccCCCCCCceEEEEeeeeeCCceEEEeeeeeecCC-CcEEEEEEecCCccHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999875 599999999999999999998875
No 2
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.2e-113 Score=917.79 Aligned_cols=792 Identities=36% Similarity=0.538 Sum_probs=712.7
Q ss_pred CCcccchhhhHHHHHh-hhcCCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHh
Q 003409 19 SPFLGIEKGAVLQEAR-VFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKEL 97 (822)
Q Consensus 19 ~~~~~~~k~~~lqE~r-~f~~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~ 97 (822)
..|...++++++||++ .||++|+++++||.++.++.|++.+|+.|++.+++.+||+++|+||++|..+|+-+|++++++
T Consensus 13 ~vf~~~~~~t~~qd~~~sfn~Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkel 92 (898)
T COG5240 13 KVFTTLTERTLLQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKEL 92 (898)
T ss_pred ccccChhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 5789999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhhhhHHhhcCCCCH-HHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHH
Q 003409 98 SPSADEVIIVTSSLMKDMTSKTD-MYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIV 176 (822)
Q Consensus 98 ~~~~~~~lLviNsl~kDl~~~n~-~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v 176 (822)
+...++++|.||+|+||++...| .+|.+|||+|-++.+.+++.++.+++++++.++++.+|.+|+...|||++.+.+.+
T Consensus 93 S~~tedvlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~ 172 (898)
T COG5240 93 SKLTEDVLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQT 172 (898)
T ss_pred hhcchhhhHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHH
Confidence 99999999999999999998877 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC----------------ChhHHHHHHHHHHHHHhcChHHHHHHHHHhc-CCCCCChhHHHHHHHHHH
Q 003409 177 KRWSNEVQEAVQSR----------------AALVQFHALALLHQIRQNDRLAVSKLVTSLT-RGTVRSPLAQCLLIRYTT 239 (822)
Q Consensus 177 ~~~~~~l~~ll~d~----------------~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~-~~~~~~~w~~v~llr~l~ 239 (822)
++|.++.++++-|- ++..+|||+++||+++++|.++..+++..+. ..+..++.+-+.++|+..
T Consensus 173 ~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~ 252 (898)
T COG5240 173 KRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATV 252 (898)
T ss_pred HHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHH
Confidence 99999999986542 5678999999999999999999999999775 223678899999999998
Q ss_pred hhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhcc--CCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc
Q 003409 240 QVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELN--GVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK 317 (822)
Q Consensus 240 ~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~--~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~ 317 (822)
.++.+ +++....+..+|..+|.++..+|.+|++|+++.+. +..++...+++..|+.||+++....||.|+|++++
T Consensus 253 ~ll~~---n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~ 329 (898)
T COG5240 253 ELLKE---NSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQ 329 (898)
T ss_pred HHHHh---ChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 88777 78888889999999999999999999999999964 55678899999999999999999999999999987
Q ss_pred -----------------CcCCCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCccc
Q 003409 318 -----------------SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLK 380 (822)
Q Consensus 318 -----------------~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~ 380 (822)
.+++|.|++|.+.|++.|+++|+++|++++++.+..|+.++++.||+.+|++++.||.+||.+
T Consensus 330 lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k 409 (898)
T COG5240 330 LAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK 409 (898)
T ss_pred HHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH
Confidence 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCChHHHH
Q 003409 381 YRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYI 460 (822)
Q Consensus 381 ~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~~~~i 460 (822)
+..+++||.+.|.++||++|+..++++|.+++.+.|+.+|.++..||+|||||+|+++..+++.|||+.||..++|.+|+
T Consensus 410 ~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yv 489 (898)
T COG5240 410 KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYV 489 (898)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHhhcc--ccchHHHHHHHHHHhcCCCCC----------------------------
Q 003409 461 RYIYNRVHLENATVRAAAVSTLAKFGAMV--DALKPRVFVLLRRCLYDGDDE---------------------------- 510 (822)
Q Consensus 461 ~~i~~~~~~e~~~vr~~~ltal~K~~~~~--~~~~~~i~~ll~~~~~d~d~E---------------------------- 510 (822)
|+||||+++|+..||++++.|+.||+... +-...+|..+|+||++|.|+|
T Consensus 490 rhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da~~pl~~sd~~~ 569 (898)
T COG5240 490 RHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDACEPLFSSDELG 569 (898)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhhhhccccccccC
Confidence 99999999999999999999999999876 456889999999999999999
Q ss_pred ---------------CccCCCCCCCCCCccccccchhhh----cCCCCCCCC-CCCCC----CCCCCchhhHhhhhcCCc
Q 003409 511 ---------------EPAEQPFDINSVPKEVKTQPLAEK----KAPGKMPAG-LGAPP----SGPPSTVDAYEKLLSSIP 566 (822)
Q Consensus 511 ---------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~----~~~~~~~~~~~~~l~~ip 566 (822)
..+.+.||+..+|++.+++.+++. +.....+.. ..+.+ ..+++..-.|+.+|-.+.
T Consensus 570 dipsle~~l~~yIse~sf~t~fdvnqv~~~tedem~a~nlk~kks~t~ld~te~~p~edans~a~pni~tky~d~l~sie 649 (898)
T COG5240 570 DIPSLELELIGYISEDSFATAFDVNQVRKFTEDEMKAINLKRKKSETTLDTTESVPKEDANSKADPNIKTKYADELLSIE 649 (898)
T ss_pred CcchhHHhhheeeccccccccccccccccccHhhhhhhhhhhccccceecccccCChhhhhcccCCccchhhhhhhhhhh
Confidence 135566777778888777666541 111111111 11111 123445568999999999
Q ss_pred cccccCCccccCCceeecccccceEEEEEEEeecceEEEEEEeecCCCcccceeEEEEEecCCCCCceEEEeccCCCCCC
Q 003409 567 EFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPY 646 (822)
Q Consensus 567 ~~~~~g~~~~~s~~v~lte~e~ey~v~~~kh~~~~~ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~ip~~~L~~ 646 (822)
|+..||++++||.++.|||+|+||+|+++||+|++|+||||.+.||+.+..|+|+.|.+.|..++ ... ..+...++..
T Consensus 650 q~k~fg~lvnSsr~i~LTEpeaefvVkvvKhvfkD~lVlqF~l~NtL~~i~l~n~~vv~tp~~~d-~~e-e~i~~~qids 727 (898)
T COG5240 650 QIKPFGQLVNSSREIILTEPEAEFVVKVVKHVFKDRLVLQFLLENTLEGIQLSNGIVVLTPTGGD-KKE-ESIKVDQIDS 727 (898)
T ss_pred hhccccccccccCceeecCCcceeeehhhhhhhccceEEEEEeccchhheeeccceEEEcCCCcc-chh-heeehhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999886553 222 3333456667
Q ss_pred CCCceEEEEEeeCCCCCceeeeeceeeeEEeeeCCCCCCCCCCCccceEEccceeecccccccccCcCchHHHHhhcCCC
Q 003409 647 DSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPD 726 (822)
Q Consensus 647 ~~~~~~~v~~~~~~~~~~~~~f~~~L~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~~dfi~p~~~~~F~~~W~~~~~~ 726 (822)
++...++|.|++....+-.|+|.++|.|+.+|++++||||+++||+|||.++++.++.+||++|+..++|...++++.
T Consensus 728 ~e~~~~~v~fk~~d~~~~eg~~~N~l~ftTkeI~~dt~epedegfqDey~id~~~i~agDfv~p~~~~nf~~~fd~l~-- 805 (898)
T COG5240 728 SEGTLSIVRFKKLDWDIEEGYVVNGLFFTTKEIEGDTSEPEDEGFQDEYSIDPFQITAGDFVRPVRIKNFPATFDRLK-- 805 (898)
T ss_pred CCCceEEEEecccccccccceEeccceEEEEeecCCCCCccccccccceeccceeecccccccchhccCCccchhccc--
Confidence 788889999998876666678999999999999999999999999999999999999999999999999999999983
Q ss_pred ceeEEEEecCCCCcHHHHHHHHHHhhCCcccCCCccccCCCccceEEEEEEEecCceEEEEEEEeecCCcceEEEEEEec
Q 003409 727 FERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRS 806 (822)
Q Consensus 727 ~e~~~~~~l~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ag~~~~~~~vl~~~~~~~~~~~~~~~~~~vRs 806 (822)
.|...+|.+.-.-+.++.+++++...-|.|.++++ .|++++.|++.+.|+...|.+|++++++..+...||++++.+|.
T Consensus 806 ~E~~~v~~~~~~~s~~~~~dki~ln~~~~p~e~Te-~p~ds~~hvmkL~Gk~~~G~kV~~~vkMv~S~~~g~tvkV~~~g 884 (898)
T COG5240 806 REITFVLQGDIYASGKKILDKILLNSMKIPTEETE-TPNDSNTHVMKLNGKAYHGTKVSIRVKMVYSMACGCTVKVYCDG 884 (898)
T ss_pred hhhhheehhhHHHHHHHHHHHHHHhhccccccccC-CCCCCcceEEEEcceeccCceeeehhHHHHhhccCeEEEEEecC
Confidence 56666777654555677788888888899999998 68889999999999988899999999999887789999999999
Q ss_pred CCcchHHHHHHH
Q 003409 807 EDDNVSDMIHEI 818 (822)
Q Consensus 807 ~~~~v~~~v~~~ 818 (822)
++.-+++.|...
T Consensus 885 Es~~~~~lVvgl 896 (898)
T COG5240 885 ESLYVTQLVVGL 896 (898)
T ss_pred chHhHHHHHHhc
Confidence 977777776654
No 3
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-97 Score=808.67 Aligned_cols=751 Identities=18% Similarity=0.264 Sum_probs=620.0
Q ss_pred HHHHh-hhcCC-CCChHHhHHHHHHHHHHHhcCC--CCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCCC-cch
Q 003409 30 LQEAR-VFNDP-QLDPRRCSQVITKLLYLLNQGE--TFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSA-DEV 104 (822)
Q Consensus 30 lqE~r-~f~~~-~~~~~k~~~~l~kli~~~~~G~--~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~-~~~ 104 (822)
+.-+| +|... .++++++++|++|++|++++|+ +|||||+. +|++|+.|++|++|||++..+.+++ +.+
T Consensus 37 LanIRskFk~~K~L~gYqkKKYV~KLlyI~llg~dIdFGhmEaV-------~LLss~kysEKqIGYl~is~L~n~n~dl~ 109 (938)
T KOG1077|consen 37 LANIRSKFKGDKTLDGYQKKKYVCKLLYIYLLGYDIDFGHMEAV-------NLLSSNKYSEKQIGYLFISLLLNENSDLM 109 (938)
T ss_pred HHHHHHHhccccccchhhhHHHHHHHHHHHHhcCccccchHHHH-------HHhhcCCccHHHHhHHHHHHHHhcchHHH
Confidence 33477 78877 6899999999999999999998 69999874 5678999999999999998888775 557
Q ss_pred hhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcC--CCHHHHHHHHHHHHhhcccChhHHH--HHH
Q 003409 105 IIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVD--KNPVVASAALVSGIHLLQTTPEIVK--RWS 180 (822)
Q Consensus 105 lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d--~~p~VRk~A~la~~~l~~~~pe~v~--~~~ 180 (822)
-+++|+++|||.|+||.+.++||+++++|++++|++.+..+|.+.|.+ ..+||||+||+|++|||+++||++. .|.
T Consensus 110 klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~ 189 (938)
T KOG1077|consen 110 KLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWA 189 (938)
T ss_pred HHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHH
Confidence 899999999999999999999999999999999999999999999976 5689999999999999999999986 699
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhcChHH--------HHHH---HH-------HhcCCCCCChhHHHHHHHHHHhhh
Q 003409 181 NEVQEAVQSRAALVQFHALALLHQIRQNDRLA--------VSKL---VT-------SLTRGTVRSPLAQCLLIRYTTQVI 242 (822)
Q Consensus 181 ~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~--------i~~L---i~-------~l~~~~~~~~w~~v~llr~l~~~~ 242 (822)
.++..+|+|++-+|..++..++..+.+..+.. +.+| +. +|.|-.+|+||+|++++|+++.|.
T Consensus 190 ~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p 269 (938)
T KOG1077|consen 190 QRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYP 269 (938)
T ss_pred HHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCC
Confidence 99999999999999999999999888776544 2222 21 344334999999999999999883
Q ss_pred hcccCCCCCchhhHHHHHHHhcc--------------CChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhH
Q 003409 243 REAATTQTGDRPFYDFLESCLRH--------------KAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLR 308 (822)
Q Consensus 243 ~~~~~d~~~~~~l~~~l~~~L~~--------------~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~r 308 (822)
+ +.||..+..+.++++.+|+. ..+||+|||++++++++. +++++.+|++.|+.||+++++|+|
T Consensus 270 ~--~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~-e~~ll~~~~~~Lg~fls~rE~NiR 346 (938)
T KOG1077|consen 270 T--PEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDS-EPELLSRAVNQLGQFLSHRETNIR 346 (938)
T ss_pred C--CCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHhhcccccch
Confidence 3 44888889999999999864 348999999999999964 789999999999999999999999
Q ss_pred HHHHHhhcc-------------------CcCC-CCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHH
Q 003409 309 FAAVRTLNK-------------------SLIS-DQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVE 368 (822)
Q Consensus 309 y~aL~~l~~-------------------~lL~-d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~ 368 (822)
|+||+++.+ ..|+ +.|.|||++|+|+||.||+.+|++.||.||+.|+..+++.+|++++.
T Consensus 347 YLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireeivl 426 (938)
T KOG1077|consen 347 YLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEIVL 426 (938)
T ss_pred hhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 999999865 4455 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCCchhHHH-hhheecC
Q 003409 369 AIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLST-QILHFLG 447 (822)
Q Consensus 369 aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~~~~~~~-~i~wiLG 447 (822)
++++||+||++++.||||+++++++.+|+| +.+++|.++.+|+.|+|++|.++.+++.+++.....+|.+. +.+|+||
T Consensus 427 KvAILaEKyAtDy~WyVdviLqLiriagd~-vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLG 505 (938)
T KOG1077|consen 427 KVAILAEKYATDYSWYVDVILQLIRIAGDY-VSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILG 505 (938)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHhccc-ccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999998 89999999999999999999999999999999988787654 4589999
Q ss_pred CCCCCCC-----ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhccccchHHHHHHHHHHhcCCCCC--CccCCCCC--
Q 003409 448 TEGPKTS-----DPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDE--EPAEQPFD-- 518 (822)
Q Consensus 448 Ey~~~~~-----~~~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~~~~~~~i~~ll~~~~~d~d~E--~~~~~~~~-- 518 (822)
|||+.+. .|...|..++..+.+.++.+|+.+||++.||+..+||+++.|..+|+.+.+-.|.| ||+.||++
T Consensus 506 Efg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~PEi~~~v~~vFq~~~n~~D~ElQqRa~EYLql~ 585 (938)
T KOG1077|consen 506 EFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFPEIKSNVQKVFQLYSNLIDVELQQRAVEYLQLS 585 (938)
T ss_pred hhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHHHhhcccCCHHHHHHHHHHHHHH
Confidence 9999875 38899999999999999999999999999999999999999999999999999999 78888885
Q ss_pred -----------CCCCCccccccchhhhcCCCC-------------C----CCCCC--------------------C--C-
Q 003409 519 -----------INSVPKEVKTQPLAEKKAPGK-------------M----PAGLG--------------------A--P- 547 (822)
Q Consensus 519 -----------~~~~~~~~~~~~~~~~~~~~~-------------~----~~~~~--------------------~--~- 547 (822)
+++||+|+++++...++.+.. . +++.. + +
T Consensus 586 k~as~dvL~~vleeMPpF~er~ssll~kl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~tp~~v~~~s~st~~~~v~~~p~ 665 (938)
T KOG1077|consen 586 KLASTDVLQTVLEEMPPFPERESSLLKKLKKKKPSAISLRAGAGPKTLANPPPVASEPTPSKVSKRSNSTDPLSVPSPPP 665 (938)
T ss_pred HhccchHHHHHHhhCCCCccccchHHHHhhccCCchhccccccCCcccCCCCcccCCCCcccccCCCCCCCcccCCCCCC
Confidence 368999999886654322100 0 00000 0 0
Q ss_pred CCCC---CCc----hhhHhh---hhc--CCcc--ccccCCccccCCceeecccccceEEEEEEEeec---ceEEEEEEee
Q 003409 548 PSGP---PST----VDAYEK---LLS--SIPE--FSDFGKLFKSSAPVELTEAETEYAVNVVKHIFD---RHVVFQYNCT 610 (822)
Q Consensus 548 ~~~~---~~~----~~~~~~---~l~--~ip~--~~~~g~~~~~s~~v~lte~e~ey~v~~~kh~~~---~~ivl~f~v~ 610 (822)
+++. .+. .+.... ..+ ..|. +.+|..++..+.||.++++ +.+.|+|..|. ||+.|+|+++
T Consensus 666 ~n~t~~~~~~~~~~~di~s~~~~~~s~~~~p~~~~~~f~r~~~k~~GVLfed~---~iQIgvk~e~r~~~grl~LfygNk 742 (938)
T KOG1077|consen 666 PNNTISSVNSQIPSVDIFSGLDGYYSRQILPGNAFYGFTRFCSKDNGVLFEDS---LIQIGVKSETRNNLGRLYLFYGNK 742 (938)
T ss_pred CCCCccCCCCCCCchhhhcCccccccccCCChhhhhhhhhheeccCcEEeecc---ceeEEEeeeccCcCCeEEEEeccc
Confidence 0000 000 000000 000 1222 3455677878899999765 99999999996 6999999866
Q ss_pred cCCCcccceeEEEEEecCCCCCc--eEEEeccCCCCCCCCCceE-E-EEEeeCCCCCceeeeeceeeeEEeeeCCCCCCC
Q 003409 611 NTIPEQLLENVTVIVDASEAEEF--AEVASKPLRSLPYDSPGQI-F-GAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDV 686 (822)
Q Consensus 611 Nt~~d~~L~nv~v~l~~~~~~~~--~~~~~ip~~~L~~~~~~~~-~-v~~~~~~~~~~~~~f~~~L~f~v~~~~~~tg~~ 686 (822)
++- +|++++-.+.++++..+ ........++++||.+.++ | +.+.++....|...++ |.. +|.+
T Consensus 743 ts~---~lt~~s~~ii~~~~~~~~L~~~~kpv~~ti~~g~qvQQ~~~v~~i~d~~d~pil~is----fk~------g~ti 809 (938)
T KOG1077|consen 743 TSV---PLTSLSPTIIPPGNLELHLAVQNKPVTATIPPGAQVQQSLEVSCIRDFEDPPILAIS----FKF------GGTI 809 (938)
T ss_pred ccc---cccccceeeecCCchhhhhhhcCcccCCCCCccceecceeeeeeecccccCCeEEEE----EEe------CCch
Confidence 544 69999988877554223 3333455679999997553 3 5556666566666665 543 1221
Q ss_pred CCCCccceEE--ccceeecccccccccCcC--chHHHHhhcCC-CceeEEEEecCCCCcHHHHHHHHHHhhCCcccCCCc
Q 003409 687 EDDGVEDEYQ--LEDLEVVAADYVMKVGVS--NFRNAWESIGP-DFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTE 761 (822)
Q Consensus 687 ~~~g~~d~y~--L~~l~i~~~dfi~p~~~~--~F~~~W~~~~~-~~e~~~~~~l~~~~~~~~a~~~i~~~~~~~~~~~~~ 761 (822)
.... + .+|+.+++|++|..++ +|+.+|.+++. ..|.+++|... .+--...++..+.+||+++|++.|
T Consensus 810 ------~~~ta~l-~lp~~iskf~~Pt~l~s~~Ff~rWk~ls~~~~~~q~~fk~~-rpld~~~l~~~l~gf~~~l~~~VD 881 (938)
T KOG1077|consen 810 ------NLKTAIL-KLPVLISKFFQPTELTSEDFFSRWKQLSGPQQEAQEVFKAN-RPLDAPSLENKLLGFGQTLLDNVD 881 (938)
T ss_pred ------hhhhhce-echhhHhhhcCcccccHHHHHHHHHhcccchhHHHHHHhcC-CccccHHHHHHHhhhhHHHhccCC
Confidence 1111 4 5899999999998874 79999999974 44778889873 332355588899999999999999
Q ss_pred cccCCCccceEEEEEEEecC-ceEEEEEEEeecCCcceEEEEEEecCCcchHHHHHHHHhc
Q 003409 762 VVANNSRSHTCLLSGVFIGN-VKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVAS 821 (822)
Q Consensus 762 ~~~~~~~~~~l~~ag~~~~~-~~vl~~~~~~~~~~~~~~~~~~vRs~~~~v~~~v~~~~~~ 821 (822)
|+|+ |++.||+++++ ..|+|.+|++++. +..++|+|+||+++.+++.+..+++.
T Consensus 882 pnp~-----nlv~agii~t~tq~vgCL~RiEpn~-~~~~~rltvrss~~tlak~l~e~l~n 936 (938)
T KOG1077|consen 882 PNPS-----NLVGAGIIHTKSQNVGCLLRIEPNA-QAQMYRLTVRTSKPTLAKELVELLKN 936 (938)
T ss_pred CCcc-----ceEEEEEEeecceeeeeEEEeccCC-cceEEEEEEecCCchHHHHHHHHHhh
Confidence 8866 99999999996 6899999999995 47899999999999999999998863
No 4
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-77 Score=657.65 Aligned_cols=734 Identities=16% Similarity=0.246 Sum_probs=557.3
Q ss_pred HHhhhcCCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCC-------Ccch
Q 003409 32 EARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-------ADEV 104 (822)
Q Consensus 32 E~r~f~~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~-------~~~~ 104 (822)
|++.-.++..+..|..+ |+|+|++|.+|++++++.|+.+.|. +.++++++||+.|+|| ++.+. -+|+
T Consensus 24 ~ik~~Lek~~~~~KIea-mK~ii~~mlnGe~~p~Llm~IiRfv----lps~~~elKKLly~yw-E~vPKt~~dgkl~~EM 97 (948)
T KOG1058|consen 24 EIKEKLEKGDDEVKIEA-MKKIIALMLNGEDLPSLLMTIIRFV----LPSRNHELKKLLYYYW-ELVPKTDSDGKLLHEM 97 (948)
T ss_pred HHHHHHhcCChHHHHHH-HHHHHHHHHcCCCchHHHHHHhhee----eccCchHHHHHHHHHH-HHccccCCCcccHHHH
Confidence 44544445556778888 9999999999999999999988885 8999999999999999 88874 2789
Q ss_pred hhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHH-------hhcccChhHHH
Q 003409 105 IIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGI-------HLLQTTPEIVK 177 (822)
Q Consensus 105 lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~-------~l~~~~pe~v~ 177 (822)
+|+||++||||+|||+++||..||+||+++.+|+.++++|.|++|+.|+++||||.|++|++ +|+++.||++.
T Consensus 98 ILvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~ 177 (948)
T KOG1058|consen 98 ILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIE 177 (948)
T ss_pred HHHHHHHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 56678899999
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHH
Q 003409 178 RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYD 257 (822)
Q Consensus 178 ~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~ 257 (822)
.++...++..|.| +|+.+|+++.+. .|+.+|...+..-+.+++.+|..++.++.+.... .|..+.++++
T Consensus 178 ~fL~~e~DpsCkR------NAFi~L~~~D~E--rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~---~p~~~~~~i~ 246 (948)
T KOG1058|consen 178 SFLLTEQDPSCKR------NAFLMLFTTDPE--RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLA---NPAEKARYIR 246 (948)
T ss_pred HHHHhccCchhHH------HHHHHHHhcCHH--HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhc---CHHHhhHHHH
Confidence 9888777766666 899999988887 8899988755411134455555444444443224 6888889999
Q ss_pred HHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhc------c-----------CcC
Q 003409 258 FLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLN------K-----------SLI 320 (822)
Q Consensus 258 ~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~------~-----------~lL 320 (822)
.+-.+|+++++||.|||+-++..+++.|..+...|..++..+...+|+|++...+.-|. + ++|
T Consensus 247 ~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvL 326 (948)
T KOG1058|consen 247 CIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVL 326 (948)
T ss_pred HHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHc
Confidence 99999999999999999999999987766666777788999999999998655544432 2 778
Q ss_pred CCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhh-------hhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Q 003409 321 SDQNRSIATLAITTLLKTGNESSVDRLMKQITNFM-------SDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILR 393 (822)
Q Consensus 321 ~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~-------~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~ 393 (822)
+.+|.++|+++|++.+.+++..|+++|+.-|..-+ .+-+..||+.++++|+.+|.+||+.+..++..++++|.
T Consensus 327 ss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fis 406 (948)
T KOG1058|consen 327 SSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFIS 406 (948)
T ss_pred CcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999996665422 13345799999999999999999999999999999998
Q ss_pred hcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCChHHHHHHHHh--------
Q 003409 394 EEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYN-------- 465 (822)
Q Consensus 394 ~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i~~-------- 465 (822)
+... .-...++.+++..++++|++|..++.+|.+.+..+..+++.+.++||+|||+....+....+..+-+
T Consensus 407 D~N~-~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~~i~~~~k~i~~slGEvp~~ 485 (948)
T KOG1058|consen 407 DSNE-AAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLSEIQSVIKIIRQSLGEVPIV 485 (948)
T ss_pred cCCH-HHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHhcccccee
Confidence 7433 3566778999999999999999999999999999999999999999999999876544433322211
Q ss_pred -----------------hc-----------------cC--------------CCHHHHH-----------HHHHHHHHHh
Q 003409 466 -----------------RV-----------------HL--------------ENATVRA-----------AAVSTLAKFG 486 (822)
Q Consensus 466 -----------------~~-----------------~~--------------e~~~vr~-----------~~ltal~K~~ 486 (822)
+. .. +-|..|. .+-++++|++
T Consensus 486 ~sei~~~~~~~~~e~~~~~~s~~~~~~~~v~~dGTYAteSA~s~~~~~~~~~~rp~lrr~ll~GdfflgA~la~tLtKl~ 565 (948)
T KOG1058|consen 486 CSEIERLHGEQTKEIELTSSSAPSSTKPKVLADGTYATESAFSSSSPTVKEADRPSLRRFLLTGDFFLGAVLAITLTKLV 565 (948)
T ss_pred hHHHhhhhcccccccccccccccccCCCeeecCccchhhhhhcccccchhhccchHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 00 00 0112232 2223588888
Q ss_pred hccccc----------hHHHHHHHHHHhcCCCCCCccCCCCCCCCCCc--------------c----cc--ccc------
Q 003409 487 AMVDAL----------KPRVFVLLRRCLYDGDDEEPAEQPFDINSVPK--------------E----VK--TQP------ 530 (822)
Q Consensus 487 ~~~~~~----------~~~i~~ll~~~~~d~d~E~~~~~~~~~~~~~~--------------~----~~--~~~------ 530 (822)
.|+.++ +....-++.+.+.-.-.. -...++|.|+... + .+ +++
T Consensus 566 lr~~~l~~~k~~~N~~~aea~lIM~sii~lGkS~-~~~~~Id~Ds~erI~~cIr~L~~~~p~~~~~f~~~cr~s~~~m~~ 644 (948)
T KOG1058|consen 566 LRFEELEGPKTRQNALKAEALLIMVSIIHLGKSS-FVSKTIDNDSLERIMLCIRILVSRNPEMNSQFLDDCRQSFEKMID 644 (948)
T ss_pred HHHHHhcccHhhhhHHHHHHHHHHHHHHHhcccc-CCCCCcCcchHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHhh
Confidence 876432 222333333333321100 0112233322110 0 00 000
Q ss_pred ---hhh-----hcCCCCCCCCC---------CCC---------------CCCCCCc--hhhHhhhhcCCccccccCCccc
Q 003409 531 ---LAE-----KKAPGKMPAGL---------GAP---------------PSGPPST--VDAYEKLLSSIPEFSDFGKLFK 576 (822)
Q Consensus 531 ---~~~-----~~~~~~~~~~~---------~~~---------------~~~~~~~--~~~~~~~l~~ip~~~~~g~~~~ 576 (822)
..+ ++......++. ++. +.+.... ......+|.++.|++||+||++
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~ddpI~f~q~~~~~s~~~~en~fe~~L~~A~g~~~~~~~~s~~sKL~kV~QLtGfSDPVY 724 (948)
T KOG1058|consen 645 AKKKRRKEELLKKSQKTTAQPDDPINFRQLRSGRSDERGENQFEEDLVQATGDAQKAEDGSPASKLNKVTQLTGFSDPVY 724 (948)
T ss_pred HHHHHHHHHHHhhhccccCCCCCccchHhhcccchhhhhhhHHHHHHHHHhccccccccCCcHHHhhceeeccCCCCCee
Confidence 000 00000000000 000 0000000 1122467889999999988863
Q ss_pred cCCceeecccccceEEEEEEEeecceEEEEEEeecCCCcccceeEEEEEecCCCCCceEEEeccCCCCCCCCCceEEEEE
Q 003409 577 SSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAF 656 (822)
Q Consensus 577 ~s~~v~lte~e~ey~v~~~kh~~~~~ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~ip~~~L~~~~~~~~~v~~ 656 (822)
. |. .+..++| +|||++.+.|++++ +|+|+++++.+.++ ++....+++-+|.|+...++.+.+
T Consensus 725 a-----------EA--yv~vnqy--DIVLDvL~VNqT~~-tLQNl~lelATlgd--LKlve~p~p~~Laph~f~~ikatv 786 (948)
T KOG1058|consen 725 A-----------EA--YVTVNQY--DIVLDVLLVNQTKE-TLQNLSLELATLGD--LKLVERPTPFSLAPHDFVNIKATV 786 (948)
T ss_pred e-----------EE--Eeeeeee--eEEEEEEEecCChH-HHhhheeeeeeccC--ceeeecCCCcccCcccceeEEEEE
Confidence 2 22 3455666 99999999999976 89999999999887 999999888999999998888887
Q ss_pred eeCC--CCCceeeeeceeeeEEeeeCCCCCCCCCCCcc-ceEEccceeecccccccccCcC--chHHHHhhcCCCceeEE
Q 003409 657 EKPE--GVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVE-DEYQLEDLEVVAADYVMKVGVS--NFRNAWESIGPDFERVD 731 (822)
Q Consensus 657 ~~~~--~~~~~~~f~~~L~f~v~~~~~~tg~~~~~g~~-d~y~L~~l~i~~~dfi~p~~~~--~F~~~W~~~~~~~e~~~ 731 (822)
+... +|++.|++. |.+. |. +.+ ....|+|++|+++|||+|+.++ +||++|.++ ||++
T Consensus 787 KVsStenGvIfGnIv----Y~~~------~~----a~~~~~VvLndIhidImDYI~Pa~~~d~~FRtmW~ef----EWEN 848 (948)
T KOG1058|consen 787 KVSSTENGVIFGNIV----YDTS------EA----ANDRNVVVLNDIHIDIMDYIKPAKCDDDEFRTMWAEF----EWEN 848 (948)
T ss_pred EEeeccCcEEEEEEE----ecCc------cc----cccceEEEeccccccHHHhcCCCcCChHHHHHHHHHh----hhcc
Confidence 7765 778888665 5331 11 122 2356999999999999999996 699999998 7999
Q ss_pred EEecC-CCCcHHHHHHHHHHhhCCcccCCCccccCCCccceEEEEEEEecCceEEEEEEEeecC-CcceEEEEEEecCCc
Q 003409 732 EYGLG-PRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDG-PKEVAMKLAVRSEDD 809 (822)
Q Consensus 732 ~~~l~-~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ag~~~~~~~vl~~~~~~~~~-~~~~~~~~~vRs~~~ 809 (822)
++++. +.+++.+++.++++.+||.++++......++++...+++++..+|+++|++++++.+. ++.+.++++|||+.+
T Consensus 849 Kvtv~t~~~~L~e~l~~i~kstNmkcLtpe~al~g~CgFlaaNlya~SifgedALaNvsieK~~~~~~v~g~iRIRsK~Q 928 (948)
T KOG1058|consen 849 KVTVNTTIKTLREFLGHISKSTNMKCLTPEAALDGDCGFLAANLYAKSIFGEDALANVSIEKSSDGGPVSGHIRIRSKTQ 928 (948)
T ss_pred eeeeccccccHHHHHHHHHhhcCCcccCchhhccCccchhhhhHHHHhhccchhheeeeeeccCCCCCceEEEEEEeccc
Confidence 99984 7899999999999999999999866444457999999999999999999999999854 457999999999999
Q ss_pred chHHHHHHHHh
Q 003409 810 NVSDMIHEIVA 820 (822)
Q Consensus 810 ~v~~~v~~~~~ 820 (822)
|+|-.|-+-++
T Consensus 929 GialSLgdkv~ 939 (948)
T KOG1058|consen 929 GIALSLGDKVG 939 (948)
T ss_pred ceeeeHHHHHH
Confidence 99988876665
No 5
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=2.8e-73 Score=666.85 Aligned_cols=481 Identities=17% Similarity=0.230 Sum_probs=420.5
Q ss_pred CCcccchhhhHHHHHhhhcCCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhC
Q 003409 19 SPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELS 98 (822)
Q Consensus 19 ~~~~~~~k~~~lqE~r~f~~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~ 98 (822)
+-|+...|++.++|+|...+++. .++++.+|+|+|++|++|+ |++.+|++|+|+++|+|+++|||||||++.|+
T Consensus 23 ~~~f~~~~kge~~ELr~~L~s~~-~~~kk~alKkvIa~mt~G~-----DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya 96 (746)
T PTZ00429 23 SKYFAQTRRGEGAELQNDLNGTD-SYRKKAAVKRIIANMTMGR-----DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTA 96 (746)
T ss_pred cccccccccchHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCCC-----CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Confidence 45676678889999996555544 4444556999999999999 88999999999999999999999999999999
Q ss_pred CCC-cchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH
Q 003409 99 PSA-DEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK 177 (822)
Q Consensus 99 ~~~-~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~ 177 (822)
+.. +.++|+||+|+||++|+||++||+|||+||+|+.+++++++.++|++++.|++|||||+|++|++|+|+.+|+.+.
T Consensus 97 ~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~ 176 (746)
T PTZ00429 97 RLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY 176 (746)
T ss_pred ccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc
Confidence 975 4599999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred --HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChH-------HHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCC
Q 003409 178 --RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL-------AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATT 248 (822)
Q Consensus 178 --~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~-------~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d 248 (822)
.|++++.+++.|+|++|++||+.+|++|+.+++. .+.+|+..+. ..+||+|+.+|+++++|.|. +
T Consensus 177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~---e~~EW~Qi~IL~lL~~y~P~---~ 250 (746)
T PTZ00429 177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLP---ECNEWGQLYILELLAAQRPS---D 250 (746)
T ss_pred ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhh---cCChHHHHHHHHHHHhcCCC---C
Confidence 6999999999999999999999999999987643 3455666665 67899999999999987554 4
Q ss_pred CCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCC-ChHhHhhHH----HHHHHHhcCCCchhHHHHHHhhcc------
Q 003409 249 QTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGV-TNRELTPAI----TVLQLFLSSSKPVLRFAAVRTLNK------ 317 (822)
Q Consensus 249 ~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~-~~~~~~~a~----~~L~~~l~s~~~n~ry~aL~~l~~------ 317 (822)
......+++.+.+.|+|+|+||+|+|+|+++++... ++..+..+. .+|. +|.++++|+||++|+++..
T Consensus 251 ~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv-~L~ss~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 251 KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALL-TLSRRDAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHH-HhhCCCccHHHHHHHHHHHHHHHCH
Confidence 555678899999999999999999999999999743 234444443 3333 4567899999999999754
Q ss_pred ----------CcC-CCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHH
Q 003409 318 ----------SLI-SDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMN 386 (822)
Q Consensus 318 ----------~lL-~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~ 386 (822)
.+. +|+ .+||++||++|+++||++|++.|++||.+|+++.|.+|++++|++||.||.|||..+.||++
T Consensus 330 ~lf~~~~~~Ff~~~~Dp-~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~ 408 (746)
T PTZ00429 330 NLLRTNLDSFYVRYSDP-PFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCAN 408 (746)
T ss_pred HHHHHHHHhhhcccCCc-HHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 233 555 47999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHh--hcCCchhHHHhhheecCCCCCCCCChHHHHHHHH
Q 003409 387 FLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFI--EDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIY 464 (822)
Q Consensus 387 ~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l--~~~~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i~ 464 (822)
+|+++++..++ +..+++.++++|++++|+.+ ++..|++.+ +++..++++++++|||||||+.+++..++++.+.
T Consensus 409 ~Ll~ll~~~~~--~v~e~i~vik~IlrkyP~~~--il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~L~~~i 484 (746)
T PTZ00429 409 LLLQIVDRRPE--LLPQVVTAAKDIVRKYPELL--MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDIIQRFI 484 (746)
T ss_pred HHHHHhcCCch--hHHHHHHHHHHHHHHCccHH--HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHHHHHHH
Confidence 99999987544 45578999999999999864 788888866 7889999999999999999999999999999999
Q ss_pred hhccCCCHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHhcCCCC-C--CccCCCC
Q 003409 465 NRVHLENATVRAAAVSTLAKFGAMVD-ALKPRVFVLLRRCLYDGDD-E--EPAEQPF 517 (822)
Q Consensus 465 ~~~~~e~~~vr~~~ltal~K~~~~~~-~~~~~i~~ll~~~~~d~d~-E--~~~~~~~ 517 (822)
++|..|++.||+++|||++|++.++| +.++.+..+|+.++.+.|+ | +|+..|+
T Consensus 485 ~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 485 DTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTHSDDPDVRDRAFAYW 541 (746)
T ss_pred hhhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 99999999999999999999999998 6889999999999887766 4 4544444
No 6
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-72 Score=629.18 Aligned_cols=474 Identities=21% Similarity=0.317 Sum_probs=426.2
Q ss_pred hhhhHH-HH---Hh-hhcCCCCChHHhHHHHHHHHHHHhcCCC--CCccchhhhhhhhhhhcccCCccchhHHHHHHHHh
Q 003409 25 EKGAVL-QE---AR-VFNDPQLDPRRCSQVITKLLYLLNQGET--FTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKEL 97 (822)
Q Consensus 25 ~k~~~l-qE---~r-~f~~~~~~~~k~~~~l~kli~~~~~G~~--f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~ 97 (822)
|.++++ +| +| .|+++..+.++++..|.||+|++|+||+ ||++|| +|+++|.++..||+|||+++.+
T Consensus 25 EEr~vI~kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypahFGqiec-------lKLias~~f~dKRiGYLaamLl 97 (866)
T KOG1062|consen 25 EERAVIQKECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPAHFGQIEC-------LKLIASDNFLDKRIGYLAAMLL 97 (866)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCccchhhHH-------HHHhcCCCchHHHHHHHHHHHH
Confidence 444545 46 66 7999988888888889999999999994 999887 5789999999999999999999
Q ss_pred CCCCcc-hhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHH
Q 003409 98 SPSADE-VIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIV 176 (822)
Q Consensus 98 ~~~~~~-~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v 176 (822)
.+++++ .+|+||+|+|||+|+|.++.|+||.++|+|.++||++++.|.|.+++.+++|||||||++|++|++++.|+++
T Consensus 98 LdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~ 177 (866)
T KOG1062|consen 98 LDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV 177 (866)
T ss_pred hccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH
Confidence 999766 7889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHH---HHHHHH-------Hh---------cCCCCCChhHHHHHHHH
Q 003409 177 KRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLA---VSKLVT-------SL---------TRGTVRSPLAQCLLIRY 237 (822)
Q Consensus 177 ~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~---i~~Li~-------~l---------~~~~~~~~w~~v~llr~ 237 (822)
+.|++...++|++++++|+..++.++.+++...+.+ ++++++ ++ ++++++.||+||++||+
T Consensus 178 e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrl 257 (866)
T KOG1062|consen 178 EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRL 257 (866)
T ss_pred HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHH
Confidence 999999999999999999999999999999886544 333333 22 24469999999999999
Q ss_pred HHhhhhcccCCCCCchhhHHHHHHHhcc------CChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHH
Q 003409 238 TTQVIREAATTQTGDRPFYDFLESCLRH------KAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAA 311 (822)
Q Consensus 238 l~~~~~~~~~d~~~~~~l~~~l~~~L~~------~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~a 311 (822)
+.-+... |++.++.|.++|.+..++ .++||+|||+++|+.+.. .+.++..|+++|++||.++|.|+||+|
T Consensus 258 LriLGq~---d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~-~~~LrvlainiLgkFL~n~d~NirYva 333 (866)
T KOG1062|consen 258 LRILGQN---DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRS-NSGLRVLAINILGKFLLNRDNNIRYVA 333 (866)
T ss_pred HHHhcCC---CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccC-CchHHHHHHHHHHHHhcCCccceeeee
Confidence 9877555 888999999999999975 468999999999999975 578999999999999999999999999
Q ss_pred HHhhcc-----------------CcCCCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 003409 312 VRTLNK-----------------SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLC 374 (822)
Q Consensus 312 L~~l~~-----------------~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la 374 (822)
|..|.+ .||+|+|.||||+||+++|+++|++||..+++||..|+..++++||.+++.+|..+|
T Consensus 334 Ln~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~la 413 (866)
T KOG1062|consen 334 LNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDFKADIASKIAELA 413 (866)
T ss_pred hhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 998866 899999999999999999999999999999999999999999999999999999999
Q ss_pred HhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhC-CchHHHHHHHHHHHhh-----cCCchhHHHhhheecCC
Q 003409 375 LKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDI-PDAKENGLLHLCEFIE-----DCEFTYLSTQILHFLGT 448 (822)
Q Consensus 375 ~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~-p~~~~~~l~~L~~~l~-----~~~~~~~~~~i~wiLGE 448 (822)
+||+++..|++|++++.|..+|+| |.+++|+.+.+++.+- ++.+++++.+|...+. +++.+.+.++++|+|||
T Consensus 414 EkfaP~k~W~idtml~Vl~~aG~~-V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGE 492 (866)
T KOG1062|consen 414 EKFAPDKRWHIDTMLKVLKTAGDF-VNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGE 492 (866)
T ss_pred HhcCCcchhHHHHHHHHHHhcccc-cchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhh
Confidence 999999999999999999999998 8999999999999988 8999999999998763 36677788999999999
Q ss_pred CCCCCC-----------ChHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHhhccccchHHHHHHHHHHhcCCCCC
Q 003409 449 EGPKTS-----------DPSKYIRYIYNRVH--LENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDE 510 (822)
Q Consensus 449 y~~~~~-----------~~~~~i~~i~~~~~--~e~~~vr~~~ltal~K~~~~~~~~~~~i~~ll~~~~~d~d~E 510 (822)
||+..- ++++.+..+++-+. ..+..+|+++++|++|+..|++...++|..++..+..+.|-|
T Consensus 493 YGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~~ri~~lI~~~~~s~~~e 567 (866)
T KOG1062|consen 493 YGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSSERIKQLISSYKSSLDTE 567 (866)
T ss_pred hhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhcccccHH
Confidence 996543 34677777766543 346899999999999999999988899999999999988888
No 7
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=1.6e-64 Score=591.81 Aligned_cols=480 Identities=24% Similarity=0.362 Sum_probs=418.8
Q ss_pred hhhHHHHHh-hhcCCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCCCcc-
Q 003409 26 KGAVLQEAR-VFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADE- 103 (822)
Q Consensus 26 k~~~lqE~r-~f~~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~- 103 (822)
+..+-+|++ .+++.+.+.++++++|+|++|++++|+ +++.+|+.++++++|+|+.+|||||+|+..+.+..++
T Consensus 2 ~~~~~~el~~~~~~~~~~~~~~~~~l~kli~~~~~G~-----~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~ 76 (526)
T PF01602_consen 2 RKRISQELAKILNSFKIDISKKKEALKKLIYLMMLGY-----DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL 76 (526)
T ss_dssp HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH
T ss_pred cchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-----CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH
Confidence 334556755 444444677777778999999999999 6678999999999999999999999999999988655
Q ss_pred hhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHH-HHHH
Q 003409 104 VIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKR-WSNE 182 (822)
Q Consensus 104 ~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~-~~~~ 182 (822)
++|++|+++|||+|+||++||+|||+||+++++++++.+.+.|.+++.|++|||||+|++|++++++.+|+.++. |++.
T Consensus 77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~ 156 (526)
T PF01602_consen 77 LILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPK 156 (526)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHH
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999988 8999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcChH---HHHHHHHHhc--CCCCCChhHHHHHHHHHHhhhhcccCCCCCc--hhh
Q 003409 183 VQEAVQSRAALVQFHALALLHQIRQNDRL---AVSKLVTSLT--RGTVRSPLAQCLLIRYTTQVIREAATTQTGD--RPF 255 (822)
Q Consensus 183 l~~ll~d~~~~V~~~al~lL~~i~~~d~~---~i~~Li~~l~--~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~--~~l 255 (822)
+..++.|+|++|+.+|+.++++++.+++. .+.+++..+. .+ .++||.|+.++|++..+.+. ++... ..+
T Consensus 157 l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~-~~~~~~q~~il~~l~~~~~~---~~~~~~~~~~ 232 (526)
T PF01602_consen 157 LKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLS-DPDPWLQIKILRLLRRYAPM---EPEDADKNRI 232 (526)
T ss_dssp HHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHT-CCSHHHHHHHHHHHTTSTSS---SHHHHHHHHH
T ss_pred HhhhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhccc-ccchHHHHHHHHHHHhcccC---ChhhhhHHHH
Confidence 99999999999999999999999222222 2333433322 12 78999999999999988655 45555 578
Q ss_pred HHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc----------------Cc
Q 003409 256 YDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK----------------SL 319 (822)
Q Consensus 256 ~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~----------------~l 319 (822)
++.+.+.+++++++|+|||++++..+.. ....+..++..|..|++++++|+||.+|+.+.. .+
T Consensus 233 i~~l~~~l~s~~~~V~~e~~~~i~~l~~-~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~ 311 (526)
T PF01602_consen 233 IEPLLNLLQSSSPSVVYEAIRLIIKLSP-SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFF 311 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHH
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhhc-chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhhe
Confidence 9999999999999999999999999975 455788999999999999999999999998765 33
Q ss_pred C-CCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhc-CHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCC
Q 003409 320 I-SDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDI-ADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGG 397 (822)
Q Consensus 320 L-~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~-~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~ 397 (822)
+ .|+|.+||++||++|+.++|++|++.|+++|..|+++. +.+|+.+++++|+.+|.+||+...||++++++++...|+
T Consensus 312 l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~ 391 (526)
T PF01602_consen 312 LLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGD 391 (526)
T ss_dssp HHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGG
T ss_pred ecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccc
Confidence 3 48999999999999999999999999999999999766 778999999999999999999999999999999998776
Q ss_pred cchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCC---hHHHHHHHHhhccCCCHHH
Q 003409 398 FEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSD---PSKYIRYIYNRVHLENATV 474 (822)
Q Consensus 398 ~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~---~~~~i~~i~~~~~~e~~~v 474 (822)
+ +..++|..+.+++.++|+.++.++..|++.++++..+++++.++|++||||+...+ +.++++.+.+++..+++.|
T Consensus 392 ~-~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~v 470 (526)
T PF01602_consen 392 Y-VSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEV 470 (526)
T ss_dssp G-CHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHH
T ss_pred c-ccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHH
Confidence 6 78999999999999999999999999999999999999999999999999999888 9999999999999999999
Q ss_pred HHHHHHHHHHHhhccc--cchHHHHHHHHHHhc--CCCCC--CccCCC
Q 003409 475 RAAAVSTLAKFGAMVD--ALKPRVFVLLRRCLY--DGDDE--EPAEQP 516 (822)
Q Consensus 475 r~~~ltal~K~~~~~~--~~~~~i~~ll~~~~~--d~d~E--~~~~~~ 516 (822)
|+.+++|++|++.+.| +..+.+...+..+.. +.|.| +|+.++
T Consensus 471 k~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y 518 (526)
T PF01602_consen 471 KLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREY 518 (526)
T ss_dssp HHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 9999999999999998 567789998888888 55555 444433
No 8
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8e-58 Score=506.79 Aligned_cols=450 Identities=17% Similarity=0.245 Sum_probs=397.1
Q ss_pred hHHHHHhhhcCCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCC-Ccchhh
Q 003409 28 AVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-ADEVII 106 (822)
Q Consensus 28 ~~lqE~r~f~~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~-~~~~lL 106 (822)
..-+++..+.+++-+..||++ |+++|.+|++|. +++.+|++|+|+++|+|.++|||+|+|+..||++ +++++|
T Consensus 35 ~~~~dL~~lLdSnkd~~KleA-mKRIia~iA~G~-----dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL 108 (968)
T KOG1060|consen 35 IRHDDLKQLLDSNKDSLKLEA-MKRIIALIAKGK-----DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL 108 (968)
T ss_pred CChHHHHHHHhccccHHHHHH-HHHHHHHHhcCC-----cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee
Confidence 344689999999999999999 999999999999 7999999999999999999999999999999997 577999
Q ss_pred hhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q 003409 107 VTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEA 186 (822)
Q Consensus 107 viNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~l 186 (822)
.||++||+|.|||+.+||.|||+|++|+.+.+++.+.-.|+++..|.+|||||.||+|+.|||.-.|+.-..+.+.+..+
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~L 188 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKL 188 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred hcCCChhHHHHHHHHHHHHHhcCh----HHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCC------------
Q 003409 187 VQSRAALVQFHALALLHQIRQNDR----LAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQT------------ 250 (822)
Q Consensus 187 l~d~~~~V~~~al~lL~~i~~~d~----~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~------------ 250 (822)
|.|++|.|+.+|+.++-++|++.- ..+++|.+-+. ...+|+|+.+|..+.+|.+....+|.
T Consensus 189 LaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~---dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~ 265 (968)
T KOG1060|consen 189 LADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLP---DVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRS 265 (968)
T ss_pred hcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhcc---chhhhhHHHHHHHHHHHHHhcCCCccccccccccCccc
Confidence 999999999999999999998742 12344444332 33489999888777776554322231
Q ss_pred ------------------CchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHH
Q 003409 251 ------------------GDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAV 312 (822)
Q Consensus 251 ------------------~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL 312 (822)
.-+.+++.+.++|++.|++|++.++++++++. |.......+..|.++|.++ +.+||..|
T Consensus 266 ~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lA--P~~~~~~i~kaLvrLLrs~-~~vqyvvL 342 (968)
T KOG1060|consen 266 CNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLA--PKNQVTKIAKALVRLLRSN-REVQYVVL 342 (968)
T ss_pred ccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhC--CHHHHHHHHHHHHHHHhcC-CcchhhhH
Confidence 12467888999999999999999999999994 5666777788888888764 47899988
Q ss_pred Hhhcc---------------CcCCCCc-hhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHh
Q 003409 313 RTLNK---------------SLISDQN-RSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLK 376 (822)
Q Consensus 313 ~~l~~---------------~lL~d~d-~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k 376 (822)
+.+.. +++...| ..+|.+||++|..++|++|+..|++||..|+.+.+-+|....|++||+||.+
T Consensus 343 ~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~ 422 (968)
T KOG1060|consen 343 QNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASR 422 (968)
T ss_pred HHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHh
Confidence 88754 3333333 5799999999999999999999999999999999989999999999999999
Q ss_pred CcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCC-
Q 003409 377 FPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSD- 455 (822)
Q Consensus 377 ~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~- 455 (822)
.-.....|++.|+.+|+..... |..+.+.+|+.+++++|-.|..++.+|++.++.+..+.+++.++|++|||+..++.
T Consensus 423 ~~sv~~tCL~gLv~Llsshde~-Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri 501 (968)
T KOG1060|consen 423 IGSVTDTCLNGLVQLLSSHDEL-VVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRI 501 (968)
T ss_pred hCchhhHHHHHHHHHHhcccch-hHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchh
Confidence 9999999999999999976444 77888999999999999999999999999999999999999999999999998776
Q ss_pred hHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhccc
Q 003409 456 PSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVD 490 (822)
Q Consensus 456 ~~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~~ 490 (822)
.++.+|.+...|..|.++||.++|...+|++...+
T Consensus 502 ~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~ 536 (968)
T KOG1060|consen 502 APDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNI 536 (968)
T ss_pred chHHHHHHHHhhccccchhhHHHHHhhhhheEech
Confidence 57899999999999999999999999999987654
No 9
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-58 Score=514.87 Aligned_cols=477 Identities=17% Similarity=0.288 Sum_probs=428.5
Q ss_pred CCcccchhhhHHHHHhhhcCCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhC
Q 003409 19 SPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELS 98 (822)
Q Consensus 19 ~~~~~~~k~~~lqE~r~f~~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~ 98 (822)
.+|+..+|.+++.|.|+-+.+... .|.+.+++|+|..|+.|. |++.+|++|+|++++.|.++|||+|||++.|+
T Consensus 4 ~k~F~~~~k~ei~elks~l~s~~~-~kr~~a~kkvIa~Mt~G~-----DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa 77 (734)
T KOG1061|consen 4 SKYFSTDKKGEIPELKSQLNSQSK-EKRKDAVKKVIAYMTVGK-----DVSSLFPDVVKCMQTRDLELKKLVYLYLMNYA 77 (734)
T ss_pred ccccCcchhhhchHHHHHhhhhhh-hhHHHHHHHHHhcCccCc-----chHhhhHHHHhhcccCCchHHHHHHHHHHHhh
Confidence 467777888888998843344444 555566999999999998 89999999999999999999999999999999
Q ss_pred CC-CcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH
Q 003409 99 PS-ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK 177 (822)
Q Consensus 99 ~~-~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~ 177 (822)
.. ++++++++|++.||+.|+||.+|++|+|++++++.+.+.+++..++.+++.|.+|||||+|+.|+.+++..+|+.++
T Consensus 78 ~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~ 157 (734)
T KOG1061|consen 78 KGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE 157 (734)
T ss_pred ccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc
Confidence 86 56799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred --HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcCh---------HHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhccc
Q 003409 178 --RWSNEVQEAVQSRAALVQFHALALLHQIRQNDR---------LAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAA 246 (822)
Q Consensus 178 --~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~---------~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~ 246 (822)
.+++.+.+++.|.+|+|+.+|+++|.+|...++ ..+.+++..+. ...+|+|+.++..+..|.+.
T Consensus 158 ~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~---ec~EW~qi~IL~~l~~y~p~-- 232 (734)
T KOG1061|consen 158 DSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALN---ECTEWGQIFILDCLAEYVPK-- 232 (734)
T ss_pred ccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHH---HhhhhhHHHHHHHHHhcCCC--
Confidence 499999999999999999999999999987764 22456666665 78899999999999999776
Q ss_pred CCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCCh----HhHhhHHHHHHHHhcCCCchhHHHHHHhhcc-----
Q 003409 247 TTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTN----RELTPAITVLQLFLSSSKPVLRFAAVRTLNK----- 317 (822)
Q Consensus 247 ~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~----~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~----- 317 (822)
|+.....+.+.+.+.|+|.|++|++.++++++++..... .+..+...+|..++++.. .+.|+||++++.
T Consensus 233 -d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~ 310 (734)
T KOG1061|consen 233 -DSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKR 310 (734)
T ss_pred -CchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhC
Confidence 566788899999999999999999999999998753222 234455667777777665 999999999764
Q ss_pred ----------CcC-CCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHH
Q 003409 318 ----------SLI-SDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMN 386 (822)
Q Consensus 318 ----------~lL-~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~ 386 (822)
++. .++..|||..||+++..+++.+|+.+++.||.+|..+.|.+|.+++|++||.+|.|+++. .-|++
T Consensus 311 p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv~ 389 (734)
T KOG1061|consen 311 PEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVS 389 (734)
T ss_pred hHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHH
Confidence 222 333489999999999999999999999999999999999999999999999999999877 88999
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCChHHHHHHHHhh
Q 003409 387 FLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNR 466 (822)
Q Consensus 387 ~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i~~~ 466 (822)
.++++++..-+| +.++++.+|+++++++|...+.++..+++.++..+.|+++.+++||+|||++.++|..++++.+...
T Consensus 390 ~lLell~~~~~y-vvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~en 468 (734)
T KOG1061|consen 390 ILLELLETKVDY-VVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAERIENALELLESFLEN 468 (734)
T ss_pred HHHHHHhhcccc-eeeehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHhh
Confidence 999999987788 6688889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHhcCCCCC
Q 003409 467 VHLENATVRAAAVSTLAKFGAMVD-ALKPRVFVLLRRCLYDGDDE 510 (822)
Q Consensus 467 ~~~e~~~vr~~~ltal~K~~~~~~-~~~~~i~~ll~~~~~d~d~E 510 (822)
+..|.+.||..++||..|++.+.| +.++.+..+|..|+.|.++.
T Consensus 469 ~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~~~~d~~~~ 513 (734)
T KOG1061|consen 469 FKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPLATADTDNP 513 (734)
T ss_pred cccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhhhccccCh
Confidence 999999999999999999998887 78899999999999999886
No 10
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-53 Score=465.84 Aligned_cols=473 Identities=15% Similarity=0.210 Sum_probs=411.4
Q ss_pred hHHHHHhhhcCCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCC-Ccchhh
Q 003409 28 AVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-ADEVII 106 (822)
Q Consensus 28 ~~lqE~r~f~~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~-~~~~lL 106 (822)
..+.|+|.-..++.-..|..+ +.|+-|+.+.|. +++|.-|+++..|+|..+..||+||++...-+.. ++.++|
T Consensus 36 ~~l~e~r~E~k~~d~~~k~~a-~~kl~yl~mlg~-----d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdvlmL 109 (877)
T KOG1059|consen 36 QCLEEIRQELKSDDLNVKSNA-VLKLTYLEMLGV-----DMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLML 109 (877)
T ss_pred HHHHHHHHHhhchhhhhhHHH-HHHHHHHHHHcc-----hHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHHH
Confidence 567788865555444556666 999999999999 8999999999999999999999999998665544 677899
Q ss_pred hhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q 003409 107 VTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEA 186 (822)
Q Consensus 107 viNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~l 186 (822)
.+|.++||++|+|.|-.|+||..||++.+|++++++.++|..+|.++.|||||+|++.+||+|.+|||.++..++++.+-
T Consensus 110 ~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~Ek 189 (877)
T KOG1059|consen 110 TTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEK 189 (877)
T ss_pred HHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhc--CCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhc
Q 003409 187 VQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLT--RGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLR 264 (822)
Q Consensus 187 l~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~--~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~ 264 (822)
|.|+||+|+.+|+++++|+.+.+|+.+..|.+.+. ..+..+.|..+++|++++.+.|- .|....++++.|..+++
T Consensus 190 LeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtpl---EPRLgKKLieplt~li~ 266 (877)
T KOG1059|consen 190 LEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPL---EPRLGKKLIEPITELME 266 (877)
T ss_pred ccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhcccc---CchhhhhhhhHHHHHHH
Confidence 99999999999999999999999988766666432 11267899999999999998544 89999999999999999
Q ss_pred cCChh-hHHHHHHHHhhcc-----CCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc-----------------CcCC
Q 003409 265 HKAEM-VIFEAARAITELN-----GVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK-----------------SLIS 321 (822)
Q Consensus 265 ~~~~a-V~~ea~~~i~~l~-----~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~-----------------~lL~ 321 (822)
+++.+ ++|||+++++... +...+....|+..|+.|+.++|+|+||.||-.|++ .||.
T Consensus 267 sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~ 346 (877)
T KOG1059|consen 267 STVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLD 346 (877)
T ss_pred hhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhc
Confidence 98865 9999999998862 23456778899999999999999999999988876 7999
Q ss_pred CCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCH-HHHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHhhcC
Q 003409 322 DQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIAD-EFKIVVVEAIRSLCLKF----PLKYRSLMNFLSNILREEG 396 (822)
Q Consensus 322 d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~-~~k~~~v~aI~~la~k~----~~~~~~~v~~l~~lL~~~g 396 (822)
|.|.|||.+||++|+.|+|++|+..||+.|..|+...+. .||.+++.+|..+|.+- =.+.+||+.+++++-+..|
T Consensus 347 DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~ 426 (877)
T KOG1059|consen 347 DKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEG 426 (877)
T ss_pred cCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999887776 89999999999999852 3567899999999998876
Q ss_pred CcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcC----------CchhHHHhhheecCCCCCCCCChHHHHHHHHh-
Q 003409 397 GFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDC----------EFTYLSTQILHFLGTEGPKTSDPSKYIRYIYN- 465 (822)
Q Consensus 397 ~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~----------~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i~~- 465 (822)
. .-..-+.+.++++.-+.|..|...+..+...+++. .-++++.+++||+|||++...||.+.++.+..
T Consensus 427 ~-~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~~~~leamlrp 505 (877)
T KOG1059|consen 427 T-RHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENPNDTLEAMLRP 505 (877)
T ss_pred c-chhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCHHHHHHHHhcC
Confidence 4 36788899999999999999999999999999854 24678899999999999999999999998875
Q ss_pred hccCCCHHHHHHHHHHHHHHhhcc----ccc---------hHHHHHHHHHHhcCCCCC
Q 003409 466 RVHLENATVRAAAVSTLAKFGAMV----DAL---------KPRVFVLLRRCLYDGDDE 510 (822)
Q Consensus 466 ~~~~e~~~vr~~~ltal~K~~~~~----~~~---------~~~i~~ll~~~~~d~d~E 510 (822)
+..+-++.+++..+.+++|++.+. .+. -..++.-|..+....|.|
T Consensus 506 r~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~E 563 (877)
T KOG1059|consen 506 RSDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLE 563 (877)
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchh
Confidence 444778899999999999988642 111 123455566667777777
No 11
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=8.4e-51 Score=466.04 Aligned_cols=670 Identities=17% Similarity=0.208 Sum_probs=489.2
Q ss_pred hHHHHHhhh-cCCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCC-Ccchh
Q 003409 28 AVLQEARVF-NDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-ADEVI 105 (822)
Q Consensus 28 ~~lqE~r~f-~~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~-~~~~l 105 (822)
..+++.+.= ++++.+.+|+.+ |+|+|..|+.|+ +|+.+|++|+|.++|.|.++|||+|+||..|+.. +++++
T Consensus 18 ~~~~~~~sg~l~s~n~~~kidA-mK~iIa~M~~G~-----dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l 91 (757)
T COG5096 18 DSVAALSSGRLESSNDYKKIDA-MKKIIAQMSLGE-----DMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL 91 (757)
T ss_pred hHHhhhccccccccChHHHHHH-HHHHHHHHhcCC-----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH
Confidence 445555533 445455555555 999999999999 6899999999999999999999999999999987 56699
Q ss_pred hhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHH--HHHHH
Q 003409 106 IVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKR--WSNEV 183 (822)
Q Consensus 106 LviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~--~~~~l 183 (822)
|++|+++||+.|+||++||+|||+||.++.+++++++++.|++++.|++|||||+|++|+.++|+..|+.+.. ....+
T Consensus 92 LavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l 171 (757)
T COG5096 92 LAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDIL 171 (757)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999874 56677
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhcChHH----HHHHHHHhc--CCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHH
Q 003409 184 QEAVQSRAALVQFHALALLHQIRQNDRLA----VSKLVTSLT--RGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYD 257 (822)
Q Consensus 184 ~~ll~d~~~~V~~~al~lL~~i~~~d~~~----i~~Li~~l~--~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~ 257 (822)
..++.|.||.|..+|+..|++|.+..-.. +...++++. ......+|.....+..+..+.+. +|.....+.+
T Consensus 172 ~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~---~~~s~~~~~~ 248 (757)
T COG5096 172 KELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPT---TPDSAEDFEE 248 (757)
T ss_pred HHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCC---CCCcHHHHHH
Confidence 78889999999999999999998873222 233444443 11123478887777777665544 6777788889
Q ss_pred HHHHHhccCChhhHHHHHHHHhhccCC--ChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc----------------Cc
Q 003409 258 FLESCLRHKAEMVIFEAARAITELNGV--TNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK----------------SL 319 (822)
Q Consensus 258 ~l~~~L~~~~~aV~~ea~~~i~~l~~~--~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~----------------~l 319 (822)
.+...+++.++.|+.-|++.++.+... ..........+|..++..+...+.|...+.... .+
T Consensus 249 ~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~ 328 (757)
T COG5096 249 RLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCSKLLDKVKKLFLI 328 (757)
T ss_pred hccchhhhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhHHHHHHHhhhhhh
Confidence 999999999999999999999987521 122444455677777776645555555544322 22
Q ss_pred CCCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhh--cCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh---h
Q 003409 320 ISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSD--IADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILR---E 394 (822)
Q Consensus 320 L~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~--~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~---~ 394 (822)
-.+.|.+++..+++++..+.+..|..+++-|+..|+.+ .+.++..+++++|+.++.+.+..+..|++.++.+++ .
T Consensus 329 ~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~lel~~g~~~ 408 (757)
T COG5096 329 EYNDDIYIKLEKLDQLTRLADDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLASKAESSVNDCISELLELLEGVWI 408 (757)
T ss_pred hccchHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccchhh
Confidence 25667899999999999999999999999999999998 999999999999999999998889999999999998 6
Q ss_pred cCCcchHHH----HHHHHH---HHHHhCCc----hHHHHHHHHHHHhhcC-CchhHHHhh-----heecCCCCCCCCChH
Q 003409 395 EGGFEYKKA----IVDSIV---ILIRDIPD----AKENGLLHLCEFIEDC-EFTYLSTQI-----LHFLGTEGPKTSDPS 457 (822)
Q Consensus 395 ~g~~~v~~~----iv~~i~---~iv~~~p~----~~~~~l~~L~~~l~~~-~~~~~~~~i-----~wiLGEy~~~~~~~~ 457 (822)
.|.|.+.+. .|..++ .+++.+|+ .+...+-.+.+.++-- ..|.++.+. +|++|||++.+++-.
T Consensus 409 ~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~~~~~~~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~~i~r~~ 488 (757)
T COG5096 409 RGSYIVQEVRIVDCISVIRISVLVLRILPNEYPKILLRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSDIIPRLE 488 (757)
T ss_pred ccchhhhhhcccceeeeeehhcchhhhcCCcchhhhHHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHHHHhhhh
Confidence 677744333 254443 45555554 4444555555555411 157777666 999999999877654
Q ss_pred -HHHHHHHhhccCCCHHHHHHHHHHHHHHhhcccc-chH----HHHHHHHHHhcCCCCCCccCCCCCCCCCCccccccch
Q 003409 458 -KYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDA-LKP----RVFVLLRRCLYDGDDEEPAEQPFDINSVPKEVKTQPL 531 (822)
Q Consensus 458 -~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~~~-~~~----~i~~ll~~~~~d~d~E~~~~~~~~~~~~~~~~~~~~~ 531 (822)
+.++.....+..|+..||..++++.+|+...++. .+. ....++++|...+.+++ + ++-
T Consensus 489 ~~~l~~~~~~~~~E~levq~~Il~~svkl~~~~~~~~~~~~~~~d~~v~~~~~~~v~~~D-------l-------RDr-- 552 (757)
T COG5096 489 PELLRIAISNFVDETLEVQYTILMSSVKLIANSIRKAKQCNSELDQDVLRRCFDYVLVPD-------L-------RDR-- 552 (757)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHhCcHhhhhccchhccHHHHHHHhccCChh-------H-------HHH--
Confidence 6676666677789999999999999999988763 222 33366666666443220 0 000
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCchhhHhhhhcCCccccccCCccccCCceeecccccceEEEEEEEeecceEEEEEEeec
Q 003409 532 AEKKAPGKMPAGLGAPPSGPPSTVDAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTN 611 (822)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ip~~~~~g~~~~~s~~v~lte~e~ey~v~~~kh~~~~~ivl~f~v~N 611 (822)
.--|.+.++ ++..++.+++ +.. ..+..-+.++++.-...|
T Consensus 553 -----------------------a~my~~~ls--t~~~~~s~~i------~~e---------~~~s~~~~~~i~~~~~~~ 592 (757)
T COG5096 553 -----------------------ARMYSRLLS--TPLPEFSDPI------LCE---------AKKSNSQFEIILSALLTN 592 (757)
T ss_pred -----------------------HHHHHHHhc--CCCccccchh------hhc---------ccccccchhhhhhhhccc
Confidence 001222222 2333333333 211 111111336777777788
Q ss_pred CCCcccceeEEEEEecCCCCCceEEEeccCCCCCCCCCceEEEEEeeCC--CCCceeeeeceeeeEEeeeCCCCCCCCCC
Q 003409 612 TIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKPE--GVPAVGKFSNMLRFIVKEVDPTTGDVEDD 689 (822)
Q Consensus 612 t~~d~~L~nv~v~l~~~~~~~~~~~~~ip~~~L~~~~~~~~~v~~~~~~--~~~~~~~f~~~L~f~v~~~~~~tg~~~~~ 689 (822)
+++ ++++|+++.+ +.+. +.....-|+..+++++....++.++.+. .+.+.|... |. |+..
T Consensus 593 ~t~-~~l~nl~~~~-t~~~--l~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~i~gn~~----~~--------~a~~-- 654 (757)
T COG5096 593 QTP-ELLENLRLDF-TLGT--LSTIPLKPIFNLRKGAVVLQQVTVKKPNAELGFITGNIN----PS--------GAAN-- 654 (757)
T ss_pred cCH-HHHHhhhccc-cccc--eeccCCCCcccCCCCceeeeeeeeeccchhhhhhccCcc----CC--------cccc--
Confidence 884 5899988888 5544 5555566788999998877888887775 334555332 21 2111
Q ss_pred CccceEEccceeecccccccccCcC--chHHHHhhcCCCceeEEEEecC--CCCcHHHHHHHHHHhhCCcccCCCccccC
Q 003409 690 GVEDEYQLEDLEVVAADYVMKVGVS--NFRNAWESIGPDFERVDEYGLG--PRESLAEAVSAVISLLGMQPCEGTEVVAN 765 (822)
Q Consensus 690 g~~d~y~L~~l~i~~~dfi~p~~~~--~F~~~W~~~~~~~e~~~~~~l~--~~~~~~~a~~~i~~~~~~~~~~~~~~~~~ 765 (822)
+-.-...++|.+++.++|+.|.++. .|+.+|+.. ||+++...+ ..+.+.++...+++.+||...++++..+
T Consensus 655 ~~~~~~~~~d~~~s~~~~~~~~t~~e~~~~~~~~~~----e~e~~~~~~~n~~~~l~~~~~e~~~~~nm~~~~~~~~~~- 729 (757)
T COG5096 655 EDLRDINLNDSINSISGFVNPRTVDEDYFRELWKMD----EFENKIDESSNNPKKLDDYSEEKSREDNMEILTPSDDLE- 729 (757)
T ss_pred ccccccccCCCccchhccccceeccccccccccccc----ccccccCcccCCcHhHHHHHHHhhhcccCCCCCcccccc-
Confidence 1112345677789999999999984 499999875 677777663 4667899999999999999999876332
Q ss_pred CCccceEEEEEEEecCceEEEEEEEee
Q 003409 766 NSRSHTCLLSGVFIGNVKVLVRLQFGI 792 (822)
Q Consensus 766 ~~~~~~l~~ag~~~~~~~vl~~~~~~~ 792 (822)
+.+|......++|...+++.
T Consensus 730 -------~~~~~l~s~~~~l~~~~l~~ 749 (757)
T COG5096 730 -------FSSSSLGSKSDALMSLCLEK 749 (757)
T ss_pred -------ccccccccchhhhhhhhhcC
Confidence 33333333456676666665
No 12
>PF08752 COP-gamma_platf: Coatomer gamma subunit appendage platform subdomain; InterPro: IPR014863 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal appendage domain of the gamma subunit of coatomer complexes. The appendage domain of the gamma coatomer subunit has a similar overall structural fold to the appendage domain of clathrin adaptors, and can also share the same motif-based cargo recognition and accessory factor recruitment mechanisms. The coatomer gamma subunit appendage domain contains a protein-protein interaction site and a second proposed binding site that interacts with the alpha, beta, epsilon COPI subcomplex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0005798 Golgi-associated vesicle; PDB: 1PZD_A 1R4X_A.
Probab=100.00 E-value=4.2e-40 Score=310.66 Aligned_cols=149 Identities=56% Similarity=0.941 Sum_probs=113.9
Q ss_pred hhhHhhhhcCCccccccCCccccCCceeecccccceEEEEEEEeecceEEEEEEeecCCCcccceeEEEEEecCCCCCce
Q 003409 555 VDAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFA 634 (822)
Q Consensus 555 ~~~~~~~l~~ip~~~~~g~~~~~s~~v~lte~e~ey~v~~~kh~~~~~ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~ 634 (822)
++.|+++|+.||+|++||++++||.++.|||+|+||+|+|+||+|.+||||||.|+||++||+|+||+|++++.+++ |+
T Consensus 2 ~~~y~~~l~~ipe~~~lG~l~kSs~~v~LTE~EtEY~V~~vKHiF~~hiVlQF~v~NTL~dq~LenV~V~~~~~~~~-~~ 80 (151)
T PF08752_consen 2 QEEYAEQLSKIPEFANLGPLFKSSKPVELTESETEYVVSCVKHIFAEHIVLQFNVTNTLNDQVLENVSVVLEPSEEE-FE 80 (151)
T ss_dssp HHHHHHHHHTSGGGTTS-S--EE-S-EE-S-TTSSEEEEEEEEE-SSEEEEEEEEEE--TTEEEEEEEEEEEESSS---E
T ss_pred hHHHHHHHHcChhHhhcCcccccCCCEeccCcccEEEEEEEEEEecccEEEEEEEeeccCceeeeeEEEEEecCCce-EE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999987764 99
Q ss_pred EEEeccCCCCCCCCCceEEEEEeeCC-CCCceeeeeceeeeEEeeeCCCCCCCCCCCccceEEccceeecc
Q 003409 635 EVASKPLRSLPYDSPGQIFGAFEKPE-GVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVA 704 (822)
Q Consensus 635 ~~~~ip~~~L~~~~~~~~~v~~~~~~-~~~~~~~f~~~L~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~ 704 (822)
+.+.+|+++|+|++++++||++++++ .+.+.++|+|+|||+++||||+||+++++||+|||+|||++|++
T Consensus 81 ~~~~ipi~~L~~~~~~~~yV~l~~~~~~~~~~~~f~~~LkF~vke~Dp~tge~~~~GyeDEY~lEdlel~v 151 (151)
T PF08752_consen 81 EVFIIPIPSLPYNEPGSCYVVLKRPPPGSIPSGTFSNTLKFTVKEVDPSTGEPEDEGYEDEYQLEDLELTV 151 (151)
T ss_dssp EEEEE-EEEE-CT--EEEEEEEE-SSSTT---EEEEEEEEEEEEEB-TTT--B-S--EEEEEE---EEE-G
T ss_pred EEEEEEhhhCCCCCCeeEEEEEEeCCCCCceeeeEEeEEEEEEEeecCCCCCcCCCCccceEEeccEEEeC
Confidence 99999999999999999999999954 66799999999999999999999999999999999999999874
No 13
>PF14806 Coatomer_b_Cpla: Coatomer beta subunit appendage platform
Probab=99.75 E-value=1.2e-17 Score=152.97 Aligned_cols=119 Identities=15% Similarity=0.217 Sum_probs=106.7
Q ss_pred eEEccceeecccccccccCcC--chHHHHhhcCCCceeEEEEecC-CCCcHHHHHHHHHHhhCCcccCCCccccCCCccc
Q 003409 694 EYQLEDLEVVAADYVMKVGVS--NFRNAWESIGPDFERVDEYGLG-PRESLAEAVSAVISLLGMQPCEGTEVVANNSRSH 770 (822)
Q Consensus 694 ~y~L~~l~i~~~dfi~p~~~~--~F~~~W~~~~~~~e~~~~~~l~-~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~ 770 (822)
...|+|++|++.|||+|+.++ +||++|.++ |||+++++. ...++.++++++++.+||.++++......+.++.
T Consensus 4 ~viLNdIhIdImDyI~Pa~~~~~~FR~mW~eF----EWENKi~V~t~~~dl~~yl~~i~k~tnM~~Ltp~~~l~~~~~fl 79 (129)
T PF14806_consen 4 CVILNDIHIDIMDYIKPATCSDEEFRSMWAEF----EWENKISVNTNITDLREYLDHIMKSTNMKCLTPESALSGDCGFL 79 (129)
T ss_pred EEEcccceEcHHHhcCcccCCHHHHHHHHHhh----eeeeeEEEecCCCCHHHHHHHHHHhcCcceeccccccCCCCCEE
Confidence 457999999999999999996 699999998 899999995 6779999999999999999999754344567999
Q ss_pred eEEEEEEEecCceEEEEEEEeecCCcceEEEEEEecCCcchHHHHH
Q 003409 771 TCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIH 816 (822)
Q Consensus 771 ~l~~ag~~~~~~~vl~~~~~~~~~~~~~~~~~~vRs~~~~v~~~v~ 816 (822)
.++++++..+|+++|++++++..+++.+.+.+||||..+++|..+-
T Consensus 80 ~~Nlya~S~fgedaL~Nlsiek~~~~~i~G~vRIRSk~qgia~slg 125 (129)
T PF14806_consen 80 SANLYARSIFGEDALANLSIEKQADGKISGHVRIRSKTQGIALSLG 125 (129)
T ss_pred EEEEEEEeccCCeeEEEEEEEecCCCeEEEEEEEeeCCcChhhhhc
Confidence 9999999999999999999999767789999999999999987653
No 14
>PF02296 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal domain; InterPro: IPR003164 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. AP adaptor alpha-adaptin can be divided into a trunk domain and the C-terminal appendage domain (or ear domain), separated by a linker region. The C-terminal appendage domain regulates translocation of endocytic accessory proteins to the bud site []. This entry represents a subdomain of the appendage (ear) domain of alpha-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1KYF_A 1B9K_A 1QTS_A 1KYU_A 2VJ0_A 1KY6_A 1W80_A 3HS8_A 1KYD_A 1QTP_A ....
Probab=99.69 E-value=1.6e-16 Score=144.89 Aligned_cols=106 Identities=22% Similarity=0.362 Sum_probs=84.6
Q ss_pred cccccCcC--chHHHHhhcC-CCceeEEEEecC--CCCcHHHHHHHHHHhhCCcccCCCccccCCCccceEEEEEEEecC
Q 003409 707 YVMKVGVS--NFRNAWESIG-PDFERVDEYGLG--PRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGN 781 (822)
Q Consensus 707 fi~p~~~~--~F~~~W~~~~-~~~e~~~~~~l~--~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ag~~~~~ 781 (822)
||+|+.++ +|++||++++ ++.|.+++|.+. ......+.+.+++.+|||.+++|.||+|+ ++++||+++++
T Consensus 1 F~~p~~l~~~~Ff~RWkql~~~~~E~Q~vf~~~~~~~~~~~~~~~~~l~g~~~~vl~~vDpnp~-----n~v~Agi~~t~ 75 (113)
T PF02296_consen 1 FMEPTTLSSEDFFQRWKQLGGPPQEAQEVFKLKDAKRPMDLESIRRKLEGFGFAVLDGVDPNPN-----NIVGAGIFHTK 75 (113)
T ss_dssp GEEE----HHHHHHHHTTT-SGGGEEEEEEE----SS---HHHHHHHHHHHTSEEETSSSSSTT-----SEEEEEEEE-S
T ss_pred CCCCccCCHHHHHHHHHhccCCccccEEEEcccccCCcccHHHHHHHHhcCCeEecCCCCCCcc-----cEEEEEEEEec
Confidence 88999985 7999999997 678999999963 23334677899999999999999998876 89999999996
Q ss_pred --ceEEEEEEEeecCCcceEEEEEEecCCcchHHHHHHH
Q 003409 782 --VKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEI 818 (822)
Q Consensus 782 --~~vl~~~~~~~~~~~~~~~~~~vRs~~~~v~~~v~~~ 818 (822)
++++|.+|+++|.+ +-++|+||||+++.++..|+++
T Consensus 76 ~~g~~gcLlRlE~n~~-~~~~RlTvRst~~~vs~~l~~l 113 (113)
T PF02296_consen 76 SSGNVGCLLRLEPNQD-AKMFRLTVRSTDPSVSKALCKL 113 (113)
T ss_dssp -S-EEEEEEEEEEETT-TTEEEEEEEESSHHHHHHHHHH
T ss_pred CCCcEEEEEEEeECCc-CCeEEEEEEECChhHHHHHhcC
Confidence 79999999999955 6699999999999999999864
No 15
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.38 E-value=4e-10 Score=132.34 Aligned_cols=391 Identities=17% Similarity=0.239 Sum_probs=276.9
Q ss_pred cchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCC--CchhhHHHHHHHHHHhhcCCCHHHHHHHH
Q 003409 85 GLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRI--TDGTLLTQIERYLKQAIVDKNPVVASAAL 162 (822)
Q Consensus 85 ~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I--~~~~~~~~l~~~v~~~l~d~~p~VRk~A~ 162 (822)
.++|+.|+++.-+ ++--....+.+=+.++|...|-++--+++.+ .+++.+--+...+++-+.|++|++|--|+
T Consensus 26 ~l~kli~~~~~G~-----~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL 100 (526)
T PF01602_consen 26 ALKKLIYLMMLGY-----DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLAL 100 (526)
T ss_dssp HHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHH
T ss_pred HHHHHHHHHHcCC-----CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 4778888777322 2212223444455688888887776665543 46667778999999999999999999999
Q ss_pred HHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHH-HHH---HhcCCCCCChhHHHHHHHHH
Q 003409 163 VSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSK-LVT---SLTRGTVRSPLAQCLLIRYT 238 (822)
Q Consensus 163 la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~-Li~---~l~~~~~~~~w~~v~llr~l 238 (822)
-++.++. .|++++.+.+.+..++.+++|.|.-.|+..++.+.+.+|..+.. +++ ++.. ..+|-.+.-.+..+
T Consensus 101 ~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~--d~~~~V~~~a~~~l 176 (526)
T PF01602_consen 101 RTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLS--DKDPSVVSAALSLL 176 (526)
T ss_dssp HHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTT--HSSHHHHHHHHHHH
T ss_pred hhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhcc--CCcchhHHHHHHHH
Confidence 9999985 89999999999999999999999998888888887766644333 233 2221 34555554555555
Q ss_pred Hhh-hhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhH--hhHHHHHHHHhcCCCchhHHHHHHhh
Q 003409 239 TQV-IREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNREL--TPAITVLQLFLSSSKPVLRFAAVRTL 315 (822)
Q Consensus 239 ~~~-~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~--~~a~~~L~~~l~s~~~n~ry~aL~~l 315 (822)
... .+.+ ........+++.|..++...++-+...+++++..+........ ...+..+..++++..+.+.|.+++.+
T Consensus 177 ~~i~~~~~-~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i 255 (526)
T PF01602_consen 177 SEIKCNDD-SYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLI 255 (526)
T ss_dssp HHHHCTHH-HHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCcc-hhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 543 1110 0002234456666666778889999999999988875555555 56788888888888889999998886
Q ss_pred cc----------------CcCCCCchhhHHHHHHHHhccCCcchHHHHH--HHHHHhhh-hcCHHHHHHHHHHHHHHHHh
Q 003409 316 NK----------------SLISDQNRSIATLAITTLLKTGNESSVDRLM--KQITNFMS-DIADEFKIVVVEAIRSLCLK 376 (822)
Q Consensus 316 ~~----------------~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv--~eL~~y~~-~~~~~~k~~~v~aI~~la~k 376 (822)
.. .++.++|..+|-.+|+.|..++... -..+- .-...++. +.+...|...+.-+..++..
T Consensus 256 ~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 256 IKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp HHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred HHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-chhhhhhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence 54 5678889999999999999988776 11111 12223455 67888999999999999875
Q ss_pred CcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcC---CchhHHHhhheecCCCCCCC
Q 003409 377 FPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDC---EFTYLSTQILHFLGTEGPKT 453 (822)
Q Consensus 377 ~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~---~~~~~~~~i~wiLGEy~~~~ 453 (822)
.....+++.|.+.+++..+.+++.+++..|..+..++|...+..+..+.+.+..- -..++...+.-++..+...
T Consensus 335 --~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~- 411 (526)
T PF01602_consen 335 --SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL- 411 (526)
T ss_dssp --HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT-
T ss_pred --cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh-
Confidence 6778899999999965556668999999999999999999888999999988742 2345555555666554332
Q ss_pred CChHHHHHHHHhhcc-CCCHHHHHHHHHHHHHHhhcccc
Q 003409 454 SDPSKYIRYIYNRVH-LENATVRAAAVSTLAKFGAMVDA 491 (822)
Q Consensus 454 ~~~~~~i~~i~~~~~-~e~~~vr~~~ltal~K~~~~~~~ 491 (822)
-.+.+..+++.+. ..++.++..++-.++.++...++
T Consensus 412 --~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 412 --REKILKKLIELLEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp --HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred --hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc
Confidence 2334555554433 46778888888889998887776
No 16
>PTZ00429 beta-adaptin; Provisional
Probab=99.14 E-value=2.6e-08 Score=118.87 Aligned_cols=328 Identities=17% Similarity=0.181 Sum_probs=212.4
Q ss_pred HHHHHHHHhc--CCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHH
Q 003409 50 ITKLLYLLNQ--GETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAI 127 (822)
Q Consensus 50 l~kli~~~~~--G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lAL 127 (822)
+||++|++.. ++.-++ .+.-....+.|=+.++|...|-+.-=.++.+ ..++.+-.++..++|=+.|++|+||-.|.
T Consensus 84 lKKLvYLYL~~ya~~~pe-lalLaINtl~KDl~d~Np~IRaLALRtLs~I-r~~~i~e~l~~~lkk~L~D~~pYVRKtAa 161 (746)
T PTZ00429 84 LKKLVYLYVLSTARLQPE-KALLAVNTFLQDTTNSSPVVRALAVRTMMCI-RVSSVLEYTLEPLRRAVADPDPYVRKTAA 161 (746)
T ss_pred HHHHHHHHHHHHcccChH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 7888888774 442222 2333344556777888877776554444222 12333556788999999999999999999
Q ss_pred HHhcCCC--chhhHH--HHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHH---HHHHHHHHHHhcCCChhHHHHHHH
Q 003409 128 RVLCRIT--DGTLLT--QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIV---KRWSNEVQEAVQSRAALVQFHALA 200 (822)
Q Consensus 128 r~l~~I~--~~~~~~--~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v---~~~~~~l~~ll~d~~~~V~~~al~ 200 (822)
-++.++- +|++++ .+.+.+++++.|++|.|..+|+.++..+....|+.+ +..+..+...+.+-++--+...+.
T Consensus 162 lai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~ 241 (746)
T PTZ00429 162 MGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILE 241 (746)
T ss_pred HHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 9998863 566653 467888899999999999999999999987776533 456666666666666666666666
Q ss_pred HHHHHHhcChHHHHHHHH----HhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHH---HhccCChhhHHH
Q 003409 201 LLHQIRQNDRLAVSKLVT----SLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLES---CLRHKAEMVIFE 273 (822)
Q Consensus 201 lL~~i~~~d~~~i~~Li~----~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~---~L~~~~~aV~~e 273 (822)
+|..-.+.+......++. .+. ..++-.....+|.+..+.+. .+++..+.....+.. .|.++.+-+.|-
T Consensus 242 lL~~y~P~~~~e~~~il~~l~~~Lq---~~N~AVVl~Aik~il~l~~~--~~~~~~~~~~~rl~~pLv~L~ss~~eiqyv 316 (746)
T PTZ00429 242 LLAAQRPSDKESAETLLTRVLPRMS---HQNPAVVMGAIKVVANLASR--CSQELIERCTVRVNTALLTLSRRDAETQYI 316 (746)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhcCc--CCHHHHHHHHHHHHHHHHHhhCCCccHHHH
Confidence 665554444433333433 343 35677777778877765322 122222222221211 234455567776
Q ss_pred HHHHHhhccCCChHhHhhHHHHHHHH-hcCCCch-hHHHHHHhhcc---------------CcCCCCchhhHHHHHHHHh
Q 003409 274 AARAITELNGVTNRELTPAITVLQLF-LSSSKPV-LRFAAVRTLNK---------------SLISDQNRSIATLAITTLL 336 (822)
Q Consensus 274 a~~~i~~l~~~~~~~~~~a~~~L~~~-l~s~~~n-~ry~aL~~l~~---------------~lL~d~d~sIr~~aL~lL~ 336 (822)
+.+.|..+....+.++..- +..| +..+||. +|...|+.|.+ .+..|.|..++++++.-+-
T Consensus 317 aLr~I~~i~~~~P~lf~~~---~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg 393 (746)
T PTZ00429 317 VCKNIHALLVIFPNLLRTN---LDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIA 393 (746)
T ss_pred HHHHHHHHHHHCHHHHHHH---HHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 6666655432234454432 3333 4445555 67777777654 4567888899998888877
Q ss_pred ccCC--cchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 003409 337 KTGN--ESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSN 390 (822)
Q Consensus 337 ~l~n--e~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~ 390 (822)
.++- ++-++.+++.|.+++.. ..++..++|..+..+..+||..+ ++..|+.
T Consensus 394 ~lA~k~~~~a~~cV~~Ll~ll~~-~~~~v~e~i~vik~IlrkyP~~~--il~~L~~ 446 (746)
T PTZ00429 394 SLAIKVDSVAPDCANLLLQIVDR-RPELLPQVVTAAKDIVRKYPELL--MLDTLVT 446 (746)
T ss_pred HHHHhChHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHCccHH--HHHHHHH
Confidence 6654 45677889999999865 45688889999999999999864 3444444
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.93 E-value=1.6e-07 Score=116.77 Aligned_cols=258 Identities=16% Similarity=0.170 Sum_probs=144.1
Q ss_pred hhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhc
Q 003409 109 SSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQ 188 (822)
Q Consensus 109 Nsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~ 188 (822)
+.|..-|.|+++.+|-.|+..|+.+..++.. +.+.++|.|.++.||..|+-++.++-...+. ...+..+|.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~----~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-----~~~L~~~L~ 694 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFG----PALVAALGDGAAAVRRAAAEGLRELVEVLPP-----APALRDHLG 694 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHH----HHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-----hHHHHHHhc
Confidence 5566667777777777777777777765533 3444556777777777777776665322111 112334455
Q ss_pred CCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCCh
Q 003409 189 SRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAE 268 (822)
Q Consensus 189 d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~ 268 (822)
+.|+.|...|+..|-.+...+... ++..+. ..+|+.....++-+... . ++ +.|...+.+.++
T Consensus 695 ~~d~~VR~~A~~aL~~~~~~~~~~---l~~~L~---D~d~~VR~~Av~aL~~~--~---~~-------~~l~~~l~D~~~ 756 (897)
T PRK13800 695 SPDPVVRAAALDVLRALRAGDAAL---FAAALG---DPDHRVRIEAVRALVSV--D---DV-------ESVAGAATDENR 756 (897)
T ss_pred CCCHHHHHHHHHHHHhhccCCHHH---HHHHhc---CCCHHHHHHHHHHHhcc--c---Cc-------HHHHHHhcCCCH
Confidence 667777777766665554433322 223332 45566665555555542 1 11 234456666777
Q ss_pred hhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc------------CcCCCCchhhHHHHHHHHh
Q 003409 269 MVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK------------SLISDQNRSIATLAITTLL 336 (822)
Q Consensus 269 aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~------------~lL~d~d~sIr~~aL~lL~ 336 (822)
.|..+++..+..+.+... .+...|..++.++++.+|..|+..|.. ..|.|+|..+|..|+..|-
T Consensus 757 ~VR~~aa~aL~~~~~~~~----~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~ 832 (897)
T PRK13800 757 EVRIAVAKGLATLGAGGA----PAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALA 832 (897)
T ss_pred HHHHHHHHHHHHhccccc----hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHH
Confidence 777777777766643111 123455566666677777777666643 3346666677777777776
Q ss_pred ccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHH
Q 003409 337 KTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDS 407 (822)
Q Consensus 337 ~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~ 407 (822)
.+.++.-+ .-|...+.+.+...|..++.+++.+. - .....+.|...|++. +..|..+++..
T Consensus 833 ~l~~~~a~----~~L~~~L~D~~~~VR~~A~~aL~~~~--~---~~~a~~~L~~al~D~-d~~Vr~~A~~a 893 (897)
T PRK13800 833 GAAADVAV----PALVEALTDPHLDVRKAAVLALTRWP--G---DPAARDALTTALTDS-DADVRAYARRA 893 (897)
T ss_pred hccccchH----HHHHHHhcCCCHHHHHHHHHHHhccC--C---CHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 66554433 33333344556667777777776641 1 123344455555543 33354444443
No 18
>PRK09687 putative lyase; Provisional
Probab=98.91 E-value=1.7e-07 Score=100.43 Aligned_cols=241 Identities=19% Similarity=0.188 Sum_probs=158.3
Q ss_pred hhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q 003409 106 IVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQE 185 (822)
Q Consensus 106 LviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ 185 (822)
..++-|.+=|.|+|..+|-.|+.+|..+++++....+ .+++.|.+|.||+.|+-++-.+-... ....+.++.+..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l----~~ll~~~d~~vR~~A~~aLg~lg~~~-~~~~~a~~~L~~ 97 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLA----IELCSSKNPIERDIGADILSQLGMAK-RCQDNVFNILNN 97 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHH----HHHHhCCCHHHHHHHHHHHHhcCCCc-cchHHHHHHHHH
Confidence 3445666667899999999999999999987766554 45678999999999999998874321 111234444444
Q ss_pred H-hcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhc
Q 003409 186 A-VQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLR 264 (822)
Q Consensus 186 l-l~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~ 264 (822)
+ +.|+++.|...|+..|-+++.... .| .....+.+...+.
T Consensus 98 l~~~D~d~~VR~~A~~aLG~~~~~~~-----------------~~----------------------~~~a~~~l~~~~~ 138 (280)
T PRK09687 98 LALEDKSACVRASAINATGHRCKKNP-----------------LY----------------------SPKIVEQSQITAF 138 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhccccccc-----------------cc----------------------chHHHHHHHHHhh
Confidence 4 678888888888887776643210 01 0112233444455
Q ss_pred cCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc-------------CcCCCCchhhHHHH
Q 003409 265 HKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK-------------SLISDQNRSIATLA 331 (822)
Q Consensus 265 ~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~-------------~lL~d~d~sIr~~a 331 (822)
+.+.-|.+.|+.++..+.+ ..++..|..++.++++.+|+.|...|.+ ..+.|+|..||..|
T Consensus 139 D~~~~VR~~a~~aLg~~~~------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A 212 (280)
T PRK09687 139 DKSTNVRFAVAFALSVIND------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEA 212 (280)
T ss_pred CCCHHHHHHHHHHHhccCC------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHH
Confidence 5566677777777766542 1355666666666666777776666653 45688888999999
Q ss_pred HHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHH
Q 003409 332 ITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSI 408 (822)
Q Consensus 332 L~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i 408 (822)
+.-|-++.++.-+..|++.|.. ..++..++.++|.+..+ ..+..|.+++....+-.+...+++.+
T Consensus 213 ~~aLg~~~~~~av~~Li~~L~~------~~~~~~a~~ALg~ig~~------~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 213 IIGLALRKDKRVLSVLIKELKK------GTVGDLIIEAAGELGDK------TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHccCChhHHHHHHHHHcC------CchHHHHHHHHHhcCCH------hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 9999888887666666666542 22677788888887653 46777777776433433555444443
No 19
>PRK09687 putative lyase; Provisional
Probab=98.76 E-value=1.4e-06 Score=93.36 Aligned_cols=204 Identities=15% Similarity=0.125 Sum_probs=139.2
Q ss_pred hhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhh-HHHHHHHHHHh-hcCCC
Q 003409 77 KLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTL-LTQIERYLKQA-IVDKN 154 (822)
Q Consensus 77 kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~-~~~l~~~v~~~-l~d~~ 154 (822)
+++.++|..+|.-.--.+..+. .++++- .+.+=++|+|+.+|-.|.++|+.++.+.- .+...+.+... +.|++
T Consensus 30 ~~L~d~d~~vR~~A~~aL~~~~--~~~~~~---~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d 104 (280)
T PRK09687 30 RLLDDHNSLKRISSIRVLQLRG--GQDVFR---LAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKS 104 (280)
T ss_pred HHHhCCCHHHHHHHHHHHHhcC--cchHHH---HHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCC
Confidence 4577888888877777764442 223222 22333678999999999999999997652 24455666655 68899
Q ss_pred HHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHH
Q 003409 155 PVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLL 234 (822)
Q Consensus 155 p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~l 234 (822)
+.||+.|+-++-++....+.-..+.++.+..++.|.++.|...++..|-.+. ++.++..|+.-+. ..+++....-
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--~~~ai~~L~~~L~---d~~~~VR~~A 179 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN--DEAAIPLLINLLK---DPNGDVRNWA 179 (280)
T ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--CHHHHHHHHHHhc---CCCHHHHHHH
Confidence 9999999999998865443333355666777788889999998888886665 3467777777665 4555544444
Q ss_pred HHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCC
Q 003409 235 IRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSS 303 (822)
Q Consensus 235 lr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~ 303 (822)
..-+... +.......+.|...|...+..|..+|+..+-.+.+ ..++..|...+.++
T Consensus 180 ~~aLg~~-------~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~------~~av~~Li~~L~~~ 235 (280)
T PRK09687 180 AFALNSN-------KYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD------KRVLSVLIKELKKG 235 (280)
T ss_pred HHHHhcC-------CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC------hhHHHHHHHHHcCC
Confidence 4444432 11123456778888888888899999998887753 15666666666643
No 20
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.71 E-value=1e-05 Score=104.31 Aligned_cols=407 Identities=14% Similarity=0.105 Sum_probs=262.1
Q ss_pred hhhhcccCCccchhHHHHHHHHhCCCCcch------hhhhhhHHhhcCCCCHHHHHHHHHHhcCCCc--hhhHH-----H
Q 003409 75 VTKLFQSRDIGLRRMVYLMIKELSPSADEV------IIVTSSLMKDMTSKTDMYRANAIRVLCRITD--GTLLT-----Q 141 (822)
Q Consensus 75 v~kl~~s~d~~lKrl~YL~l~~~~~~~~~~------lLviNsl~kDl~~~n~~vr~lALr~l~~I~~--~~~~~-----~ 141 (822)
++.++.+.+...+.=.-..+..++..+++. ...++.|.+-|.++++..|-.|++++++|.. .+... .
T Consensus 409 LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaG 488 (2102)
T PLN03200 409 LVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAG 488 (2102)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 455666666666666556665666543332 2367889999999999999999999988753 22222 3
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHhhcccChh---HHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHhc-ChHHHHH
Q 003409 142 IERYLKQAIVDKNPVVASAALVSGIHLLQTTPE---IVK--RWSNEVQEAVQSRAALVQFHALALLHQIRQN-DRLAVSK 215 (822)
Q Consensus 142 l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe---~v~--~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~-d~~~i~~ 215 (822)
.++.+.++|.+.++.+|+.|+-++..+....++ ++. ..++-+.++|.+.++.++-.|+..|+.+... +...+..
T Consensus 489 aIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~ 568 (2102)
T PLN03200 489 GIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQ 568 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHH
Confidence 688999999999999999999999998764433 332 2566677888888888888888888877543 4445555
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCC-C----CchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHh--
Q 003409 216 LVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQ-T----GDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRE-- 288 (822)
Q Consensus 216 Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~-~----~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~-- 288 (822)
++.-+. ..++-.+...++.+...+.-...+. . ....-++.|..+|++.+..+.-+|+.++..+....+..
T Consensus 569 Lv~LLl---sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~ 645 (2102)
T PLN03200 569 LTALLL---GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCE 645 (2102)
T ss_pred HHHHhc---CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 665554 2334455556776655422100000 0 01235789999999999999999999998886433332
Q ss_pred ---HhhHHHHHHHHhcCCCchhHHHHHHhh---cc--------------------CcCCCCchhhHHHHHHHHhccCCcc
Q 003409 289 ---LTPAITVLQLFLSSSKPVLRFAAVRTL---NK--------------------SLISDQNRSIATLAITTLLKTGNES 342 (822)
Q Consensus 289 ---~~~a~~~L~~~l~s~~~n~ry~aL~~l---~~--------------------~lL~d~d~sIr~~aL~lL~~l~ne~ 342 (822)
...++.+|..+|++.+..++-.+-..| .+ .+++++|..++..|+..|..++...
T Consensus 646 avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~ 725 (2102)
T PLN03200 646 SLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP 725 (2102)
T ss_pred HHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc
Confidence 234566777777777666654433332 11 5678888889988888887766544
Q ss_pred -hHHH-----HHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccH--------HHHHHHHHHHHhhcCCcch-HHHHHHH
Q 003409 343 -SVDR-----LMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKY--------RSLMNFLSNILREEGGFEY-KKAIVDS 407 (822)
Q Consensus 343 -Nv~~-----Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~--------~~~v~~l~~lL~~~g~~~v-~~~iv~~ 407 (822)
+... .+.-|..++++-+++-|+.++.++..||..+|.+. .-++.-|+++|+..+...+ ..++.++
T Consensus 726 e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~ 805 (2102)
T PLN03200 726 EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEA 805 (2102)
T ss_pred hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHH
Confidence 3333 34678888998899999999999999999998543 1234456777774322211 2246667
Q ss_pred HHHHHHh-------CCchH-----HHHHHHHHHHhhcCCchhHHHhhheecCCCCC--------CCCChHHHHHHHHhhc
Q 003409 408 IVILIRD-------IPDAK-----ENGLLHLCEFIEDCEFTYLSTQILHFLGTEGP--------KTSDPSKYIRYIYNRV 467 (822)
Q Consensus 408 i~~iv~~-------~p~~~-----~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~--------~~~~~~~~i~~i~~~~ 467 (822)
+..+.+. +|-.. ...+..|.+++ ....|.+.-.++-+|...|. .+.+.++.|..+-+|+
T Consensus 806 l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l-~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (2102)
T PLN03200 806 LALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL-AEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRI 884 (2102)
T ss_pred HHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH-HcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHH
Confidence 7666662 11111 02344555555 33445555555555544443 2345567788888887
Q ss_pred cCC-CHHHH---HHHHHHHHHH
Q 003409 468 HLE-NATVR---AAAVSTLAKF 485 (822)
Q Consensus 468 ~~e-~~~vr---~~~ltal~K~ 485 (822)
+.. +.+|| .+++-|.+|-
T Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~ 906 (2102)
T PLN03200 885 INSSSLEVKIGGTALLICAAKE 906 (2102)
T ss_pred hhcCCceEEecchhhhhhhhhh
Confidence 643 55666 4556666664
No 21
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.70 E-value=2.5e-06 Score=106.20 Aligned_cols=260 Identities=17% Similarity=0.165 Sum_probs=186.3
Q ss_pred hhhhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCC
Q 003409 75 VTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKN 154 (822)
Q Consensus 75 v~kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~ 154 (822)
+.+.+.++|..+|+..=..|..+.+. . ++..|.+-|.|+++.+|..|+.+|..+....- -.+.+.+.|.|.+
T Consensus 626 L~~~L~D~d~~VR~~Av~~L~~~~~~--~---~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---~~~~L~~~L~~~d 697 (897)
T PRK13800 626 LAPYLADPDPGVRRTAVAVLTETTPP--G---FGPALVAALGDGAAAVRRAAAEGLRELVEVLP---PAPALRDHLGSPD 697 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhhhcch--h---HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---chHHHHHHhcCCC
Confidence 34568899999999988877665422 2 45677788899999999999999988742111 1245667888999
Q ss_pred HHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHH
Q 003409 155 PVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLL 234 (822)
Q Consensus 155 p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~l 234 (822)
|.||..|+.++-.+-...+.. +..++.|.|+.|...|+..|-.+... ..+. .-+. ..++......
T Consensus 698 ~~VR~~A~~aL~~~~~~~~~~-------l~~~L~D~d~~VR~~Av~aL~~~~~~--~~l~---~~l~---D~~~~VR~~a 762 (897)
T PRK13800 698 PVVRAAALDVLRALRAGDAAL-------FAAALGDPDHRVRIEAVRALVSVDDV--ESVA---GAAT---DENREVRIAV 762 (897)
T ss_pred HHHHHHHHHHHHhhccCCHHH-------HHHHhcCCCHHHHHHHHHHHhcccCc--HHHH---HHhc---CCCHHHHHHH
Confidence 999999998887764333332 23467899999998888888766432 3333 2233 4567777777
Q ss_pred HHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHh
Q 003409 235 IRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRT 314 (822)
Q Consensus 235 lr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~ 314 (822)
.+-+...-.. ++ .-.+.|..+++..++.|...|+.++-.+.. +. .+...|...|.++++.+|..|++.
T Consensus 763 a~aL~~~~~~---~~----~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~-~~----~~~~~l~~aL~d~d~~VR~~Aa~a 830 (897)
T PRK13800 763 AKGLATLGAG---GA----PAGDAVRALTGDPDPLVRAAALAALAELGC-PP----DDVAAATAALRASAWQVRQGAARA 830 (897)
T ss_pred HHHHHHhccc---cc----hhHHHHHHHhcCCCHHHHHHHHHHHHhcCC-cc----hhHHHHHHHhcCCChHHHHHHHHH
Confidence 7766654111 11 125667788888999999999999988864 22 123457777888899999999999
Q ss_pred hcc-----------CcCCCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q 003409 315 LNK-----------SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRS 372 (822)
Q Consensus 315 l~~-----------~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~ 372 (822)
|.+ .+|+|+|..||+.|+..|-.+..... ....|..-+.+.+.++|..+++++..
T Consensus 831 L~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~---a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 831 LAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPGDPA---ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHH---HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 875 67899999999999999988732333 33344455667889999999988753
No 22
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=98.62 E-value=1.8e-07 Score=87.18 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=79.1
Q ss_pred hhHhhhhcCCccccccCCccccCCceeecccccceEEEEEEEeecceEEEEEEeecCCCcccceeEEEEEecCCCCCceE
Q 003409 556 DAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAE 635 (822)
Q Consensus 556 ~~~~~~l~~ip~~~~~g~~~~~s~~v~lte~e~ey~v~~~kh~~~~~ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~ 635 (822)
+.....|.++.|++||+||+ + - |. .+..|+| +|+|++.+.|++++ +|+|+++++.+.++ +++
T Consensus 39 ~~~~skL~kv~QLTGfsDPv------Y-a----EA--~v~v~q~--DIvLDvllvNqT~~-tLqNl~vElat~gd--Lkl 100 (140)
T PF07718_consen 39 EDFSSKLNKVVQLTGFSDPV------Y-A----EA--YVTVHQY--DIVLDVLLVNQTNE-TLQNLTVELATLGD--LKL 100 (140)
T ss_pred chhhhhhccEEecccCCCCe------E-E----EE--EEEEEee--eEEEEEEEEeCChh-hhhcEEEEEEecCC--cEE
Confidence 34457899999999998886 3 2 23 5677878 99999999999966 89999999999887 999
Q ss_pred EEeccCCCCCCCCCceEEEEEeeCC--CCCceeee
Q 003409 636 VASKPLRSLPYDSPGQIFGAFEKPE--GVPAVGKF 668 (822)
Q Consensus 636 ~~~ip~~~L~~~~~~~~~v~~~~~~--~~~~~~~f 668 (822)
...++.-+|+|++..++++.+|... .|++.|.+
T Consensus 101 ve~p~~~tL~P~~~~~i~~~iKVsStetGvIfG~I 135 (140)
T PF07718_consen 101 VERPQPITLAPHGFARIKATIKVSSTETGVIFGNI 135 (140)
T ss_pred ccCCCceeeCCCcEEEEEEEEEEEeccCCEEEEEE
Confidence 9988888999999999998887765 67788833
No 23
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.62 E-value=0.00017 Score=93.32 Aligned_cols=457 Identities=15% Similarity=0.134 Sum_probs=251.0
Q ss_pred hhhhHHHHHhhhcCCCCChHHhH----HHHHHHHHHHhcCCCCCccchh-------------------hhhhhhhhhccc
Q 003409 25 EKGAVLQEARVFNDPQLDPRRCS----QVITKLLYLLNQGETFTKIEAT-------------------EVFFAVTKLFQS 81 (822)
Q Consensus 25 ~k~~~lqE~r~f~~~~~~~~k~~----~~l~kli~~~~~G~~f~~~e~s-------------------~lf~~v~kl~~s 81 (822)
+|+..+.++|.|...+...+++- ..+-.|+.++..|..-.+..+. ...+.+++++.+
T Consensus 31 ~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~s 110 (2102)
T PLN03200 31 EKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKS 110 (2102)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHC
Confidence 45556778888888765545532 2456677777666522221211 112234445555
Q ss_pred CCccchhHHHHHHHHhCCCC--cch---hh----hhhhHHhhcCCCC---HHHHH---HHHHHhcCCCch---hhHHH-H
Q 003409 82 RDIGLRRMVYLMIKELSPSA--DEV---II----VTSSLMKDMTSKT---DMYRA---NAIRVLCRITDG---TLLTQ-I 142 (822)
Q Consensus 82 ~d~~lKrl~YL~l~~~~~~~--~~~---lL----viNsl~kDl~~~n---~~vr~---lALr~l~~I~~~---~~~~~-l 142 (822)
.+.+.|.-.=-++..++..+ |+. +. ++..|..=+.+++ ..+++ .||+.||...+. .+++. .
T Consensus 111 Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGa 190 (2102)
T PLN03200 111 GSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGG 190 (2102)
T ss_pred CCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCC
Confidence 55555555544444443321 221 11 1333444344433 22333 466667765542 22333 7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH-----HHHHHHHHHhcC-CChhHHHHHHHHHHHHHhcChHH----
Q 003409 143 ERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQS-RAALVQFHALALLHQIRQNDRLA---- 212 (822)
Q Consensus 143 ~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~-----~~~~~l~~ll~d-~~~~V~~~al~lL~~i~~~d~~~---- 212 (822)
.+.+.+++.+.+|.++..|+.++.++....++... ..++.+.+++.+ .++.+..+|..+|..|+.+++..
T Consensus 191 Vp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~I 270 (2102)
T PLN03200 191 VDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAI 270 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 88899999999999999999999888877665433 267788888865 45688999998898888764322
Q ss_pred -----HHHHHHHhcCC------CCCCh-------hHHHHHHH-------HHHhhhhcc-------------------cCC
Q 003409 213 -----VSKLVTSLTRG------TVRSP-------LAQCLLIR-------YTTQVIREA-------------------ATT 248 (822)
Q Consensus 213 -----i~~Li~~l~~~------~~~~~-------w~~v~llr-------~l~~~~~~~-------------------~~d 248 (822)
+..|+.-+... ...++ |+.-.+-+ ++...+..+ ..+
T Consensus 271 v~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~ 350 (2102)
T PLN03200 271 ADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDS 350 (2102)
T ss_pred HHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCC
Confidence 22233222100 00111 44332211 111110000 000
Q ss_pred CCCc------hhhHHHHHHHhccCChh------------------------------------------hHHHHHHHHhh
Q 003409 249 QTGD------RPFYDFLESCLRHKAEM------------------------------------------VIFEAARAITE 280 (822)
Q Consensus 249 ~~~~------~~l~~~l~~~L~~~~~a------------------------------------------V~~ea~~~i~~ 280 (822)
+... ......|..++++.++. +.-.++.++.+
T Consensus 351 ~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~ 430 (2102)
T PLN03200 351 SAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSS 430 (2102)
T ss_pred chhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHH
Confidence 0000 01123344555554433 33334444444
Q ss_pred ccCCChHhH-----hhHHHHHHHHhcCCCchhHHHHHHhhcc----------------------CcCCCCchhhHHHHHH
Q 003409 281 LNGVTNREL-----TPAITVLQLFLSSSKPVLRFAAVRTLNK----------------------SLISDQNRSIATLAIT 333 (822)
Q Consensus 281 l~~~~~~~~-----~~a~~~L~~~l~s~~~n~ry~aL~~l~~----------------------~lL~d~d~sIr~~aL~ 333 (822)
+...+.+.+ ..++..|..||.+++.+++..|++.+.. .+|..++..++..|..
T Consensus 431 L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAaw 510 (2102)
T PLN03200 431 LCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSAT 510 (2102)
T ss_pred HhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 432222211 1245677788888888877766655421 6678888889999999
Q ss_pred HHhccC-CcchHHHHH------HHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHH
Q 003409 334 TLLKTG-NESSVDRLM------KQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVD 406 (822)
Q Consensus 334 lL~~l~-ne~Nv~~Iv------~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~ 406 (822)
.|..++ +++|+..++ +-|.+.+.+-+.+.+..++.+|..|+..- + ...+..++.+|...+. .++..++.
T Consensus 511 AL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~--d-~~~I~~Lv~LLlsdd~-~~~~~aL~ 586 (2102)
T PLN03200 511 VLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA--D-AATISQLTALLLGDLP-ESKVHVLD 586 (2102)
T ss_pred HHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc--c-hhHHHHHHHHhcCCCh-hHHHHHHH
Confidence 988877 455666655 34666777777888889999999887642 1 2244556677765433 35555566
Q ss_pred HHHHHHHhCCc--hH------HHHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCChHH------HHHHHHhhccCCCH
Q 003409 407 SIVILIRDIPD--AK------ENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSK------YIRYIYNRVHLENA 472 (822)
Q Consensus 407 ~i~~iv~~~p~--~~------~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~~~------~i~~i~~~~~~e~~ 472 (822)
.+..|+..-.. .+ ..++..|.+.++.- .++.+..++|+|+.|+....+... .+..+..-+...+.
T Consensus 587 vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~ 665 (2102)
T PLN03200 587 VLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTE 665 (2102)
T ss_pred HHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCh
Confidence 66555442211 11 24678888888754 467888889999999875433211 12223333333445
Q ss_pred HHHHHHHHHHHHHh
Q 003409 473 TVRAAAVSTLAKFG 486 (822)
Q Consensus 473 ~vr~~~ltal~K~~ 486 (822)
.+|..+-.|+..++
T Consensus 666 ~v~keAA~AL~nL~ 679 (2102)
T PLN03200 666 AVATQSARALAALS 679 (2102)
T ss_pred HHHHHHHHHHHHHH
Confidence 56655555555554
No 24
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.37 E-value=3.9e-06 Score=84.04 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHhc--CCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH-HHHHHHHHHhcCCChhHH
Q 003409 119 TDMYRANAIRVLC--RITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-RWSNEVQEAVQSRAALVQ 195 (822)
Q Consensus 119 n~~vr~lALr~l~--~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~-~~~~~l~~ll~d~~~~V~ 195 (822)
||.+|++|+.+|| .++-|.+++...+.+.++|.|++|.|||.|++++.||.....--++ ..+..+..++.|.|+.|.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 6899999999999 7889999999999999999999999999999999999876554444 354667778899999999
Q ss_pred HHHHHHHHHHHhc-ChHHHHHHHH
Q 003409 196 FHALALLHQIRQN-DRLAVSKLVT 218 (822)
Q Consensus 196 ~~al~lL~~i~~~-d~~~i~~Li~ 218 (822)
..|...+.++... ++..+...++
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~ 104 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFP 104 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHH
Confidence 9999999998766 5665554444
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.26 E-value=0.00043 Score=80.70 Aligned_cols=345 Identities=16% Similarity=0.189 Sum_probs=182.2
Q ss_pred hhHHhhcCCCCHHHHHHHHHHhcCCCc-hhh-H-----HHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHH--
Q 003409 109 SSLMKDMTSKTDMYRANAIRVLCRITD-GTL-L-----TQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRW-- 179 (822)
Q Consensus 109 Nsl~kDl~~~n~~vr~lALr~l~~I~~-~~~-~-----~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~-- 179 (822)
.-|++=|.|+++.+|.+|++.++++.. .+. + ..+.+.|..++.|.+..|.+.|+-++.++.+..+ ..+..
T Consensus 80 ~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~ 158 (503)
T PF10508_consen 80 PFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFD 158 (503)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhC
Confidence 455666667777777777776666422 111 1 2356666677777777777777766666654322 22222
Q ss_pred ---HHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHH---------HHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccC
Q 003409 180 ---SNEVQEAVQSRAALVQFHALALLHQIRQNDRLAV---------SKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAAT 247 (822)
Q Consensus 180 ---~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i---------~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~ 247 (822)
...+..++...+..+.+.++.++.++....+... .+++..+. ..+...|...+.++..+...
T Consensus 159 ~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~---~dDiLvqlnalell~~La~~--- 232 (503)
T PF10508_consen 159 SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD---SDDILVQLNALELLSELAET--- 232 (503)
T ss_pred cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc---CccHHHHHHHHHHHHHHHcC---
Confidence 5555565555456666666666666655544332 22233333 23455555555555543221
Q ss_pred CCCCc-----hhhHHHHHHHhcc----C--ChhhHHHHHHHHhhccCC-ChHhH---hhHHHHHHHHhcCCCchhHHHHH
Q 003409 248 TQTGD-----RPFYDFLESCLRH----K--AEMVIFEAARAITELNGV-TNREL---TPAITVLQLFLSSSKPVLRFAAV 312 (822)
Q Consensus 248 d~~~~-----~~l~~~l~~~L~~----~--~~aV~~ea~~~i~~l~~~-~~~~~---~~a~~~L~~~l~s~~~n~ry~aL 312 (822)
+... .-+++.|...+.+ . +...+...++.+.++... +.... ......|..++.+.|+..+-.|+
T Consensus 233 -~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~ 311 (503)
T PF10508_consen 233 -PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAF 311 (503)
T ss_pred -hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 1111 1123333333332 1 222344444555555432 23332 23344555667778888888888
Q ss_pred HhhccCcCCCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Q 003409 313 RTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPL-KYRSLMNFLSNI 391 (822)
Q Consensus 313 ~~l~~~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~-~~~~~v~~l~~l 391 (822)
.++. ++.... ....+| ........+..++.+..+......++|...+.+++.+-...++ ....+....-..
T Consensus 312 dtlg--~igst~-----~G~~~L-~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w 383 (503)
T PF10508_consen 312 DTLG--QIGSTV-----EGKQLL-LQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESW 383 (503)
T ss_pred HHHH--HHhCCH-----HHHHHH-HhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 7773 332221 122222 2345677888889999998888889999999999999644333 222332222222
Q ss_pred HhhcCCcchHHHHHHHHHHHHHhC-CchHHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCChHHHHHHHHhhccCC
Q 003409 392 LREEGGFEYKKAIVDSIVILIRDI-PDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLE 470 (822)
Q Consensus 392 L~~~g~~~v~~~iv~~i~~iv~~~-p~~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i~~~~~~e 470 (822)
....++-... ..+.+++++- ||+|-.+...|..... + -|.+-+... -+.+++++.+|-...
T Consensus 384 ~~~~~~~~~~----~~l~~~~~qPF~elr~a~~~~l~~l~~---~-------~Wg~~~i~~----~~gfie~lldr~~E~ 445 (503)
T PF10508_consen 384 YESLSGSPLS----NLLMSLLKQPFPELRCAAYRLLQALAA---Q-------PWGQREICS----SPGFIEYLLDRSTET 445 (503)
T ss_pred HHHhcCCchH----HHHHHHhcCCchHHHHHHHHHHHHHhc---C-------HHHHHHHHh----CccHHhhhcCCCCCC
Confidence 2222221121 1566666654 7888766655543322 1 244433222 245677888876544
Q ss_pred CHH---HHHHHHHHHHHHhh
Q 003409 471 NAT---VRAAAVSTLAKFGA 487 (822)
Q Consensus 471 ~~~---vr~~~ltal~K~~~ 487 (822)
+.+ -|-.++.++.|-..
T Consensus 446 ~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 446 TKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred CHHHHHHHHHHHHHHHhccc
Confidence 443 34556666665433
No 26
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00028 Score=81.61 Aligned_cols=256 Identities=18% Similarity=0.266 Sum_probs=168.3
Q ss_pred cCCCCHHHHHHHHHH-hcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChh
Q 003409 115 MTSKTDMYRANAIRV-LCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAAL 193 (822)
Q Consensus 115 l~~~n~~vr~lALr~-l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~ 193 (822)
|.++++-.+.=|+.. ++-|....-+..+.+.|.+++..+++-|||-..+-++|--...|++.-=-++..|..|.|+|+.
T Consensus 44 LdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~L 123 (968)
T KOG1060|consen 44 LDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQL 123 (968)
T ss_pred HhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHH
Confidence 456666666666544 3444444458889999999999999999999999999988999998765677888999999999
Q ss_pred HHHHHHHHHHHHHhcC--h---HHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCCh
Q 003409 194 VQFHALALLHQIRQND--R---LAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAE 268 (822)
Q Consensus 194 V~~~al~lL~~i~~~d--~---~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~ 268 (822)
+-..|+.+|-.|+-.- | .++++.+. .++|+.-=.--..+.++. .+||+....+.+++..+|...++
T Consensus 124 iRasALRvlSsIRvp~IaPI~llAIk~~~~------D~s~yVRk~AA~AIpKLY---sLd~e~k~qL~e~I~~LLaD~sp 194 (968)
T KOG1060|consen 124 IRASALRVLSSIRVPMIAPIMLLAIKKAVT------DPSPYVRKTAAHAIPKLY---SLDPEQKDQLEEVIKKLLADRSP 194 (968)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhc------CCcHHHHHHHHHhhHHHh---cCChhhHHHHHHHHHHHhcCCCC
Confidence 9999999998887641 1 12333333 344543211101111111 23788888999999999999999
Q ss_pred hhHHHHHHHHhhccCCChHhHhh-------------------HHHHHHHHhcC--CCchh----------------HHH-
Q 003409 269 MVIFEAARAITELNGVTNRELTP-------------------AITVLQLFLSS--SKPVL----------------RFA- 310 (822)
Q Consensus 269 aV~~ea~~~i~~l~~~~~~~~~~-------------------a~~~L~~~l~s--~~~n~----------------ry~- 310 (822)
-|+=.|+-++-.+....-.++.. +++.|.++... .+|+. .|.
T Consensus 195 lVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~ 274 (968)
T KOG1060|consen 195 LVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNE 274 (968)
T ss_pred cchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccc
Confidence 99999888886653111111111 12222222110 11100 000
Q ss_pred ---------HHHhhcc---CcCCCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCc
Q 003409 311 ---------AVRTLNK---SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFP 378 (822)
Q Consensus 311 ---------aL~~l~~---~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~ 378 (822)
-++.+-+ .||.+.|.++-.-+-.+.+.++-..-+..|++-|...+++ +.+.+..+.+.|+.++.+-|
T Consensus 275 ~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~ 353 (968)
T KOG1060|consen 275 IRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRS-NREVQYVVLQNIATISIKRP 353 (968)
T ss_pred cCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcch
Confidence 0111111 4556667777777888888888887788888888877765 66788889999999998765
Q ss_pred cc
Q 003409 379 LK 380 (822)
Q Consensus 379 ~~ 380 (822)
.-
T Consensus 354 ~l 355 (968)
T KOG1060|consen 354 TL 355 (968)
T ss_pred hh
Confidence 43
No 27
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.0031 Score=76.48 Aligned_cols=349 Identities=17% Similarity=0.219 Sum_probs=210.5
Q ss_pred hhHHhhcCCCCHHHHHHHHHHhcCCC---chh---hHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhccc---ChhHHH--
Q 003409 109 SSLMKDMTSKTDMYRANAIRVLCRIT---DGT---LLTQIERYLKQAIVDKNPVVASAALVSGIHLLQT---TPEIVK-- 177 (822)
Q Consensus 109 Nsl~kDl~~~n~~vr~lALr~l~~I~---~~~---~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~---~pe~v~-- 177 (822)
+-+..-.+|+|+..|=.|++.++++. +.. .+..+.+-..+++.|.+.-||-.|+-|+...... +++.++
T Consensus 121 ~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~ 200 (1075)
T KOG2171|consen 121 QFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKF 200 (1075)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 44556678999999999999998852 222 4457888899999996655999999887655432 344433
Q ss_pred -----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHh-------cCCC-CCChhHHHHHHHHHH---hh
Q 003409 178 -----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSL-------TRGT-VRSPLAQCLLIRYTT---QV 241 (822)
Q Consensus 178 -----~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l-------~~~~-~~~~w~~v~llr~l~---~~ 241 (822)
..++.+++.+.+.|..+...++..|.++....|+-+.+.+.++ ..+. .-++|-+ ..|.++. .+
T Consensus 201 ~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~-~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 201 RDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRH-LALEFLVSLSEY 279 (1075)
T ss_pred HHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHH-HHHHHHHHHHHh
Confidence 4666777888888888888899999999888776655533321 1111 2223332 2222222 22
Q ss_pred hhcc-cCCCCCchhhHHHHHHHh----------c---------cCChhhHHHHHH-HHhhccCCChHhHhhHHHHHHHHh
Q 003409 242 IREA-ATTQTGDRPFYDFLESCL----------R---------HKAEMVIFEAAR-AITELNGVTNRELTPAITVLQLFL 300 (822)
Q Consensus 242 ~~~~-~~d~~~~~~l~~~l~~~L----------~---------~~~~aV~~ea~~-~i~~l~~~~~~~~~~a~~~L~~~l 300 (822)
.|.. -..+.....++..+...+ + .+++.+.-+|+- +-++|+ +..+.......+..+|
T Consensus 280 Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~--g~~v~p~~~~~l~~~l 357 (1075)
T KOG2171|consen 280 APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG--GKQVLPPLFEALEAML 357 (1075)
T ss_pred hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC--hhhehHHHHHHHHHHh
Confidence 1110 001112222222222221 1 122333333332 224443 3556667778888888
Q ss_pred cCCCchhHHHHHHhhccCcCCCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCccc
Q 003409 301 SSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLK 380 (822)
Q Consensus 301 ~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~ 380 (822)
.|.+.--|.+||..++- +.+. +=+.+ +.|.+.|+.-...++.|..+-.|-.+..+||.++.-|++.
T Consensus 358 ~S~~w~~R~AaL~Als~--i~EG-------c~~~m-----~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~ 423 (1075)
T KOG2171|consen 358 QSTEWKERHAALLALSV--IAEG-------CSDVM-----IGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPE 423 (1075)
T ss_pred cCCCHHHHHHHHHHHHH--HHcc-------cHHHH-----HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHH
Confidence 88888888888876633 1110 11111 3477888888899999999999999999999999988764
Q ss_pred HH-----HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCC
Q 003409 381 YR-----SLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSD 455 (822)
Q Consensus 381 ~~-----~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~ 455 (822)
.. .+..-|+..+.+.+ +|..+.++...|.++.++|..+.+-
T Consensus 424 iqk~~~e~l~~aL~~~ld~~~------------------~~rV~ahAa~al~nf~E~~~~~~l~---------------- 469 (1075)
T KOG2171|consen 424 IQKKHHERLPPALIALLDSTQ------------------NVRVQAHAAAALVNFSEECDKSILE---------------- 469 (1075)
T ss_pred HHHHHHHhccHHHHHHhcccC------------------chHHHHHHHHHHHHHHHhCcHHHHH----------------
Confidence 22 22223333333322 3344556666677777766543221
Q ss_pred hHHHHHHHHh----hc-cCCCHHHHHHHHHHHHHHhhccc----cchHHHHHHHHHHhcCCCCC
Q 003409 456 PSKYIRYIYN----RV-HLENATVRAAAVSTLAKFGAMVD----ALKPRVFVLLRRCLYDGDDE 510 (822)
Q Consensus 456 ~~~~i~~i~~----~~-~~e~~~vr~~~ltal~K~~~~~~----~~~~~i~~ll~~~~~d~d~E 510 (822)
.|+..+.+ .+ ...++.||..++||++-.+.... .--+++..+|+.++...+++
T Consensus 470 --pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~ 531 (1075)
T KOG2171|consen 470 --PYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDK 531 (1075)
T ss_pred --HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCch
Confidence 12222222 11 12468899999999998876543 23468999999999887755
No 28
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.19 E-value=0.00098 Score=77.76 Aligned_cols=262 Identities=14% Similarity=0.157 Sum_probs=163.9
Q ss_pred HHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCCCcc-hh-h----hhhhHHhhcCCCCHHHH
Q 003409 50 ITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADE-VI-I----VTSSLMKDMTSKTDMYR 123 (822)
Q Consensus 50 l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~-~l-L----viNsl~kDl~~~n~~vr 123 (822)
.+++|.......+...+ ...+...+.+.+.+++..+|+++--.+..++..++. +- + +...+..=+.+++..+.
T Consensus 58 ~~~iL~~~l~~~~~~~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va 136 (503)
T PF10508_consen 58 ICDILKRLLSALSPDSL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVA 136 (503)
T ss_pred HHHHHHHHHhccCHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHH
Confidence 55555555544433332 445566677889999999999988777676654433 11 1 22345566689999999
Q ss_pred HHHHHHhcCCCch-hhHHHH-----HHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH---H--HHHHHHHHhcCCCh
Q 003409 124 ANAIRVLCRITDG-TLLTQI-----ERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK---R--WSNEVQEAVQSRAA 192 (822)
Q Consensus 124 ~lALr~l~~I~~~-~~~~~l-----~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~---~--~~~~l~~ll~d~~~ 192 (822)
..|+++|.++... .-.+.+ ...+++++...++.||-++.-.+.++...+++... . +++.+...+.++|.
T Consensus 137 ~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDi 216 (503)
T PF10508_consen 137 KAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDI 216 (503)
T ss_pred HHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccH
Confidence 9999999998543 344555 77888888888999999999999999999988765 2 67778788888999
Q ss_pred hHHHHHHHHHHHHHhcChHHHHH---------HHHHhc---CCCCCChhHHHHHHHHHHhhhhcccCCCCCc----hhhH
Q 003409 193 LVQFHALALLHQIRQNDRLAVSK---------LVTSLT---RGTVRSPLAQCLLIRYTTQVIREAATTQTGD----RPFY 256 (822)
Q Consensus 193 ~V~~~al~lL~~i~~~d~~~i~~---------Li~~l~---~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~----~~l~ 256 (822)
.|+.+++-+|.++... +....+ |+..+. .++...-....-.+++.+....- +|... ..++
T Consensus 217 Lvqlnalell~~La~~-~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~---~~~~v~~~~p~~~ 292 (503)
T PF10508_consen 217 LVQLNALELLSELAET-PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV---SPQEVLELYPAFL 292 (503)
T ss_pred HHHHHHHHHHHHHHcC-hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc---ChHHHHHHHHHHH
Confidence 9999999999999874 333333 333332 12102334444556666654321 22221 3455
Q ss_pred HHHHHHhccCChhhHHHHHHHHhhccCCChH--h--------HhhHHHHHHHHhcCCCchhHHHHHHhhc
Q 003409 257 DFLESCLRHKAEMVIFEAARAITELNGVTNR--E--------LTPAITVLQLFLSSSKPVLRFAAVRTLN 316 (822)
Q Consensus 257 ~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~--~--------~~~a~~~L~~~l~s~~~n~ry~aL~~l~ 316 (822)
+.+..++.+.+....--|+-++-.+.+.... . ...+....+....+....+|..+|+.+.
T Consensus 293 ~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~ 362 (503)
T PF10508_consen 293 ERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALA 362 (503)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 6666666776664444444444444321111 1 1223444445555556666666666654
No 29
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.0016 Score=74.81 Aligned_cols=287 Identities=14% Similarity=0.175 Sum_probs=191.4
Q ss_pred HHHHHHHHhcCCC-chhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHH
Q 003409 122 YRANAIRVLCRIT-DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALA 200 (822)
Q Consensus 122 vr~lALr~l~~I~-~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~ 200 (822)
.|.-=|-+..+.. +.+...-+...+++-+.+++-|=---|+-|+-++ ..|++.+.+.+.+..+|+..-|-|--.|+.
T Consensus 89 krigylaa~qSf~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~f--vTpdLARDLa~Dv~tLL~sskpYvRKkAIl 166 (877)
T KOG1059|consen 89 KRIGYLAASQSFHDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCI--VTPDLARDLADDVFTLLNSSKPYVRKKAIL 166 (877)
T ss_pred HHHhHHHHHHhhcCCccHHHHHHHHHHHHhccCccchhhheecccccc--cCchhhHHHHHHHHHHHhcCchHHHHHHHH
Confidence 3433333333333 3345555667777777777777655565555555 479999999999999999988999999999
Q ss_pred HHHHHHhcChHHH----HHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHh-ccCChhhHHHHH
Q 003409 201 LLHQIRQNDRLAV----SKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCL-RHKAEMVIFEAA 275 (822)
Q Consensus 201 lL~~i~~~d~~~i----~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L-~~~~~aV~~ea~ 275 (822)
+||.+.-..|.|+ .+|...+. .+.|=.|---+..+|.+... +|+.--.+-..+..+| .++|+=|+..-+
T Consensus 167 ~lykvFLkYPeAlr~~FprL~EkLe---DpDp~V~SAAV~VICELArK---nPknyL~LAP~ffkllttSsNNWmLIKii 240 (877)
T KOG1059|consen 167 LLYKVFLKYPEALRPCFPRLVEKLE---DPDPSVVSAAVSVICELARK---NPQNYLQLAPLFYKLLVTSSNNWVLIKLL 240 (877)
T ss_pred HHHHHHHhhhHhHhhhHHHHHHhcc---CCCchHHHHHHHHHHHHHhh---CCcccccccHHHHHHHhccCCCeehHHHH
Confidence 9999998888775 55666666 67777777777777877666 6765444445555555 456777999999
Q ss_pred HHHhhccCCChHhHhhHHHHHHHHhcCCCc-hhHHHHHHhhccCcCCCCchhhHHHHHHHHhcc-CCcchHHHHHHHHHH
Q 003409 276 RAITELNGVTNRELTPAITVLQLFLSSSKP-VLRFAAVRTLNKSLISDQNRSIATLAITTLLKT-GNESSVDRLMKQITN 353 (822)
Q Consensus 276 ~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~-n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l-~ne~Nv~~Iv~eL~~ 353 (822)
++|-.|....+.+....+.+|--++.+... -+-|-.+.++-.. .++..+ -+...+.--|..|..
T Consensus 241 KLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~--------------s~s~g~~d~~asiqLCvqKLr~ 306 (877)
T KOG1059|consen 241 KLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAV--------------SMSSGMSDHSASIQLCVQKLRI 306 (877)
T ss_pred HHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheee--------------hhccCCCCcHHHHHHHHHHHhh
Confidence 999999877788877777777776664321 1334444333210 222222 123445555677777
Q ss_pred hhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcC
Q 003409 354 FMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDC 433 (822)
Q Consensus 354 y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~ 433 (822)
|+.+.|...|---..+++.++..+|......-|.++++|.+.. ..+.-.+++.+-.++.+ .++. .+++.|.++++.-
T Consensus 307 fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD-~SIRlrALdLl~gmVsk-kNl~-eIVk~LM~~~~~a 383 (877)
T KOG1059|consen 307 FIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKD-ESIRLRALDLLYGMVSK-KNLM-EIVKTLMKHVEKA 383 (877)
T ss_pred hhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCC-chhHHHHHHHHHHHhhh-hhHH-HHHHHHHHHHHhc
Confidence 8777777788778888888888877777777777888887643 33555566666665543 1233 3666666666543
No 30
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00043 Score=79.69 Aligned_cols=326 Identities=15% Similarity=0.247 Sum_probs=195.2
Q ss_pred cchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHH---HhcCCCc-hhhHHH---HHHHHHHhhcCCCHHH
Q 003409 85 GLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIR---VLCRITD-GTLLTQ---IERYLKQAIVDKNPVV 157 (822)
Q Consensus 85 ~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr---~l~~I~~-~~~~~~---l~~~v~~~l~d~~p~V 157 (822)
.+|++.++.+ + .+.-+.++| --++==|-+.|..++-+=+- .+.+-.. ..+.+. +-..+++-|.|+|.||
T Consensus 40 amK~ii~~ml-n-Ge~~p~Llm--~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyi 115 (948)
T KOG1058|consen 40 AMKKIIALML-N-GEDLPSLLM--TIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYI 115 (948)
T ss_pred HHHHHHHHHH-c-CCCchHHHH--HHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhh
Confidence 4678877766 2 111122222 22333344555555544432 3334333 233333 4466888999999999
Q ss_pred HHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHH---HHHHHHHhc-CCCCCChhHHHH
Q 003409 158 ASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLA---VSKLVTSLT-RGTVRSPLAQCL 233 (822)
Q Consensus 158 Rk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~---i~~Li~~l~-~~~~~~~w~~v~ 233 (822)
|-..+--+.|| +.||+++.+.+.+..+|..+++-|--+|+..++.|-+.-..- ...|+.++. ....++-----
T Consensus 116 RG~TLRFLckL--kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNA- 192 (948)
T KOG1058|consen 116 RGSTLRFLCKL--KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNA- 192 (948)
T ss_pred cchhhhhhhhc--CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHH-
Confidence 99887777776 689999999999999999999999999988888876641000 112222221 11111110000
Q ss_pred HHHHHHhhhhcccCCCCCchhhHHHHHHHhcc------CChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchh
Q 003409 234 LIRYTTQVIREAATTQTGDRPFYDFLESCLRH------KAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVL 307 (822)
Q Consensus 234 llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~------~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ 307 (822)
++-++. . ||+ .-++++..++.. ....|+.|-++-.++- .+....+-+..+-.||++.++.+
T Consensus 193 Fi~L~~----~---D~E---rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~---~p~~~~~~i~~i~~lL~stssaV 259 (948)
T KOG1058|consen 193 FLMLFT----T---DPE---RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLA---NPAEKARYIRCIYNLLSSTSSAV 259 (948)
T ss_pred HHHHHh----c---CHH---HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhc---CHHHhhHHHHHHHHHHhcCCchh
Confidence 111111 1 332 223444333322 2346888888877762 46777778888888899889999
Q ss_pred HHHHHHhhcc----------------Cc-CCCCchhhHHHHHHHHhccCCcchHHHHHH----HHHHhhhhcCHHHHHHH
Q 003409 308 RFAAVRTLNK----------------SL-ISDQNRSIATLAITTLLKTGNESSVDRLMK----QITNFMSDIADEFKIVV 366 (822)
Q Consensus 308 ry~aL~~l~~----------------~l-L~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~----eL~~y~~~~~~~~k~~~ 366 (822)
+|-|--++.. +| .+.+|-.++..-|+.|..+- .+-+.|+. .++..++..|-++|.+.
T Consensus 260 ~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~--~~~~~il~~l~mDvLrvLss~dldvr~Kt 337 (948)
T KOG1058|consen 260 IFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELK--ALHEKILQGLIMDVLRVLSSPDLDVRSKT 337 (948)
T ss_pred hhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh--hhhHHHHHHHHHHHHHHcCcccccHHHHH
Confidence 9987555433 22 25555567777777776663 33333333 33344555667888888
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhh-cC-----CcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCC
Q 003409 367 VEAIRSLCLKFPLKYRSLMNFLSNILRE-EG-----GFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCE 434 (822)
Q Consensus 367 v~aI~~la~k~~~~~~~~v~~l~~lL~~-~g-----~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~ 434 (822)
++=.-.|... .....++++|-+=+.. .+ +-.+....+..|.....++|+....+++.|.++|.|..
T Consensus 338 ldi~ldLvss--rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N 409 (948)
T KOG1058|consen 338 LDIALDLVSS--RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSN 409 (948)
T ss_pred HHHHHhhhhh--ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCC
Confidence 7766666653 4566777777654432 11 11245566677777777889999999999999988764
No 31
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.0039 Score=70.11 Aligned_cols=356 Identities=17% Similarity=0.241 Sum_probs=214.1
Q ss_pred HHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCC-Ccchhh----hhhhHHhhcCCCCHHHHHHH---H
Q 003409 56 LLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-ADEVII----VTSSLMKDMTSKTDMYRANA---I 127 (822)
Q Consensus 56 ~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~-~~~~lL----viNsl~kDl~~~n~~vr~lA---L 127 (822)
.+.+|.+-.. -+..+..-|..+|+..|...|--+.-.+-+++.- ..+++. +--.+.|=..|++..+||.| -
T Consensus 71 ~iaLg~~~~~-Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLd 149 (675)
T KOG0212|consen 71 AIALGIKDAG-YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLD 149 (675)
T ss_pred HHHhccccHH-HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHH
Confidence 3445653222 2344556677788888888776655555444432 222211 11334555677888888877 4
Q ss_pred HHhcCCCchhh----HHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhH--H---HHHHHHHHHHhcCCChhHHHHH
Q 003409 128 RVLCRITDGTL----LTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEI--V---KRWSNEVQEAVQSRAALVQFHA 198 (822)
Q Consensus 128 r~l~~I~~~~~----~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~--v---~~~~~~l~~ll~d~~~~V~~~a 198 (822)
|.+--|..++- ++.++|-++.-+...+|+.|.- ++..+++....|++ + ..+++.+-.+|.|.++.|..-+
T Consensus 150 RLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~f-lv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~ 228 (675)
T KOG0212|consen 150 RLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQF-LVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLT 228 (675)
T ss_pred HHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHH-HHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHH
Confidence 56666665554 6678888899999999999875 55555554455643 3 3677888889999988776222
Q ss_pred ---H-HHHHHHHhcChHH--HHHHHHHhc-CCCCCChhHHHHHHHHHHhhhhcccCCCCC----chhhHHHHHHHhccCC
Q 003409 199 ---L-ALLHQIRQNDRLA--VSKLVTSLT-RGTVRSPLAQCLLIRYTTQVIREAATTQTG----DRPFYDFLESCLRHKA 267 (822)
Q Consensus 199 ---l-~lL~~i~~~d~~~--i~~Li~~l~-~~~~~~~w~~v~llr~l~~~~~~~~~d~~~----~~~l~~~l~~~L~~~~ 267 (822)
+ ..|.+|+.. |.. ...+++-+. .-+.+.|..|.+.+.-+..+.+-+ +.. ...++..+.+++.++-
T Consensus 229 ~t~l~~fL~eI~s~-P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~---g~~~l~~~s~il~~iLpc~s~~e 304 (675)
T KOG0212|consen 229 DTLLSEFLAEIRSS-PSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP---GRDLLLYLSGILTAILPCLSDTE 304 (675)
T ss_pred HHHHHHHHHHHhcC-ccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC---CcchhhhhhhhhhhcccCCCCCc
Confidence 2 366677643 332 223333221 112677888888887777654431 211 1233445556666655
Q ss_pred hhhHHHHHHH----HhhccCCCh----HhHhhHHHHHHHHhcCCCchhHHHHHHhhcc---------------------C
Q 003409 268 EMVIFEAARA----ITELNGVTN----RELTPAITVLQLFLSSSKPVLRFAAVRTLNK---------------------S 318 (822)
Q Consensus 268 ~aV~~ea~~~----i~~l~~~~~----~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~---------------------~ 318 (822)
++-.++++.. ++.+-+... -.....++.|.+.+++.....|.++|.-+.. .
T Consensus 305 ~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~ 384 (675)
T KOG0212|consen 305 EMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLK 384 (675)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHH
Confidence 5533333332 333322111 1245788999999998888899998765432 3
Q ss_pred cCCCCchhhHHHHHHHHhccCCcchHHHHH---HHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhc
Q 003409 319 LISDQNRSIATLAITTLLKTGNESSVDRLM---KQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREE 395 (822)
Q Consensus 319 lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv---~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~ 395 (822)
-|+|++-.+-.++|.++-.+|+..|-.... ..|++-..+-..-.+....-=|+.+|.... .+.+...+..+|..+
T Consensus 385 tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~--aE~IYr~~a~ILe~e 462 (675)
T KOG0212|consen 385 TLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLN--AERIYRSIADILERE 462 (675)
T ss_pred hhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhC--HHHHHHHHHHHHhcc
Confidence 357887788999999999999988764333 333332222122233334444667776633 345666677777777
Q ss_pred CCcchHHHHHHHHHHHHHhCCchH
Q 003409 396 GGFEYKKAIVDSIVILIRDIPDAK 419 (822)
Q Consensus 396 g~~~v~~~iv~~i~~iv~~~p~~~ 419 (822)
.+..|....|+.+-.++--.||+.
T Consensus 463 ~nl~FAstMV~~Ln~iLlTStELf 486 (675)
T KOG0212|consen 463 ENLKFASTMVQALNTILLTSTELF 486 (675)
T ss_pred ccchHHHHHHHHHHhhhcccHHHH
Confidence 777887777777777766667664
No 32
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00059 Score=79.12 Aligned_cols=373 Identities=15% Similarity=0.120 Sum_probs=187.0
Q ss_pred CCcccchhhhHHHHHhhhcCCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhC
Q 003409 19 SPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELS 98 (822)
Q Consensus 19 ~~~~~~~k~~~lqE~r~f~~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~ 98 (822)
+|+...|+-.+.++++++..+.-+.++..+ +++|.|++-.|.-++-.....-++.......|++--+.++.||-+
T Consensus 91 ls~isedviivtsslmkD~t~~~d~yr~~A-iR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~~---- 165 (865)
T KOG1078|consen 91 LSKISEDVIIVTSSLMKDMTGKEDLYRAAA-IRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPI---- 165 (865)
T ss_pred ccccchhhhhhhHHHHhhccCCCcchhHHH-HHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhcc----
Confidence 788888999999999999444445555544 999999999887554444444444444455566666666666554
Q ss_pred CCCcc-hhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchh--hHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhH
Q 003409 99 PSADE-VIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGT--LLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEI 175 (822)
Q Consensus 99 ~~~~~-~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~--~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~ 175 (822)
+.+ +.==.|-++--.++.|.+++.-||-.|..|+..+ -...+.....+. .-++|+-+---+-..-++...++..
T Consensus 166 --~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~drla~sklv~~~~~~-~~~~~~A~~~lir~~~~~l~~~~~~ 242 (865)
T KOG1078|consen 166 --SFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTRG-SLKSPLAVCMLIRIASELLKENQQA 242 (865)
T ss_pred --cHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccc-cccchhHHHHHHHHHHHHhhhcccc
Confidence 222 2223355555556666655555555555554322 111111111100 0011111000000001111111221
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhh
Q 003409 176 VKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPF 255 (822)
Q Consensus 176 v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l 255 (822)
...+.+-+..++..+.-||.+-| =|....+... .++....-
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~Ea------------------------------------Arai~~l~~~---~~r~l~pa 283 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEA------------------------------------ARAIVSLPNT---NSRELAPA 283 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHH------------------------------------HHHHhhcccc---CHhhcchH
Confidence 11222222333333333333333 2222221111 12222223
Q ss_pred HHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc---------------Cc-
Q 003409 256 YDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK---------------SL- 319 (822)
Q Consensus 256 ~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~---------------~l- 319 (822)
...|+.++.+...+..|.|+|++-.+....+.....|--=|..+++.+...+.-.|+-++.+ .+
T Consensus 284 vs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv 363 (865)
T KOG1078|consen 284 VSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFV 363 (865)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 67788888888999999999999887644444444444445556665544444445544433 11
Q ss_pred --CCCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcC
Q 003409 320 --ISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMS-DIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEG 396 (822)
Q Consensus 320 --L~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~-~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g 396 (822)
++|...-|--.|+..|... .+.=-..++.-|..-+. +-..+||+.++++|..+++-.|...+.-+..|..++.+-
T Consensus 364 ~disDeFKivvvdai~sLc~~-fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc- 441 (865)
T KOG1078|consen 364 SDISDEFKIVVVDAIRSLCLK-FPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC- 441 (865)
T ss_pred HhccccceEEeHHHHHHHHhh-ccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc-
Confidence 2344332223333322211 01111223333333333 335689999999999999988988888888999988752
Q ss_pred CcchHHHHHHHHHHHHHh-----CCch---HHHHHHHHHHHhhcCCchhHHHhh
Q 003409 397 GFEYKKAIVDSIVILIRD-----IPDA---KENGLLHLCEFIEDCEFTYLSTQI 442 (822)
Q Consensus 397 ~~~v~~~iv~~i~~iv~~-----~p~~---~~~~l~~L~~~l~~~~~~~~~~~i 442 (822)
. +..-.+..+.-+.+. +|.. +.+-.-+|++.+.++.+..+...+
T Consensus 442 e--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKf 493 (865)
T KOG1078|consen 442 E--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKF 493 (865)
T ss_pred c--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHH
Confidence 3 323233333333333 3433 333444555555554444444333
No 33
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0019 Score=73.30 Aligned_cols=239 Identities=17% Similarity=0.176 Sum_probs=150.5
Q ss_pred hhHHhhcC-CCCHHHH---HHHHHHhcCCCchhh---HHH-HHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHH
Q 003409 109 SSLMKDMT-SKTDMYR---ANAIRVLCRITDGTL---LTQ-IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWS 180 (822)
Q Consensus 109 Nsl~kDl~-~~n~~vr---~lALr~l~~I~~~~~---~~~-l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~ 180 (822)
-.+..-|. +.+|.++ +.||+-+++...... ++. ..+...+++.++++.||.-|+-|+-.+..+.|+.=.-.+
T Consensus 112 ~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl 191 (514)
T KOG0166|consen 112 PRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVL 191 (514)
T ss_pred HHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHH
Confidence 33444454 4456555 555555555333321 111 456678899999999999999999998887765422111
Q ss_pred HHHHHHhcCCChhHHHHHH-HHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHH
Q 003409 181 NEVQEAVQSRAALVQFHAL-ALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFL 259 (822)
Q Consensus 181 ~~l~~ll~d~~~~V~~~al-~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l 259 (822)
++ .++ .+|..+..+++..+ +..+ -|..-.+ ++-. .++..-+....+++.|
T Consensus 192 ----------~~----g~l~pLl~~l~~~~~~~~---lRn~-------tW~LsNl----crgk-~P~P~~~~v~~iLp~L 242 (514)
T KOG0166|consen 192 ----------SC----GALDPLLRLLNKSDKLSM---LRNA-------TWTLSNL----CRGK-NPSPPFDVVAPILPAL 242 (514)
T ss_pred ----------hh----cchHHHHHHhccccchHH---HHHH-------HHHHHHH----HcCC-CCCCcHHHHHHHHHHH
Confidence 11 111 12222333332111 1111 1443333 2211 0100112345678899
Q ss_pred HHHhccCChhhHHHHHHHHhhccCCChHhHh-----hHHHHHHHHhcCCCchhHHHHHHhhcc-----------------
Q 003409 260 ESCLRHKAEMVIFEAARAITELNGVTNRELT-----PAITVLQLFLSSSKPVLRFAAVRTLNK----------------- 317 (822)
Q Consensus 260 ~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~-----~a~~~L~~~l~s~~~n~ry~aL~~l~~----------------- 317 (822)
..+|++..+.|+-.|+.++.++.+.+..... ..+..|..+|.+++++++-.|||++..
T Consensus 243 ~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~ 322 (514)
T KOG0166|consen 243 LRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGA 322 (514)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcCh
Confidence 9999999999999999999999865554433 345578889999999999999999754
Q ss_pred -----CcCC-CCchhhHHHHHHHHhccCC--cchHHHHH-----HHHHHhhhhcCHHHHHHHHHHHHHHHHh
Q 003409 318 -----SLIS-DQNRSIATLAITTLLKTGN--ESSVDRLM-----KQITNFMSDIADEFKIVVVEAIRSLCLK 376 (822)
Q Consensus 318 -----~lL~-d~d~sIr~~aL~lL~~l~n--e~Nv~~Iv-----~eL~~y~~~~~~~~k~~~v~aI~~la~k 376 (822)
.++. .+..+||+.|--++..++. .+-++.++ ..|..-+...+...|.++.-+|+.++..
T Consensus 323 L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 323 LPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 3444 5556799999998887654 33444443 5666777777888899999999988865
No 34
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.037 Score=67.48 Aligned_cols=339 Identities=17% Similarity=0.241 Sum_probs=200.9
Q ss_pred HHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCC-----CcchhhhhhhHHhhcCCCCHHHHH
Q 003409 50 ITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-----ADEVIIVTSSLMKDMTSKTDMYRA 124 (822)
Q Consensus 50 l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~-----~~~~lLviNsl~kDl~~~n~~vr~ 124 (822)
+.++|+-+..+. .+. ....+...+.....|.|...|-++.+-+..+... .+-..-..+-|.+-++++...+|.
T Consensus 100 ~~dviAeia~~~-l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~ 177 (1075)
T KOG2171|consen 100 LADVIAEIARND-LPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRV 177 (1075)
T ss_pred HHHHHHHHHHhc-ccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHH
Confidence 778888888764 222 3344444455567899999999999988776643 122345667888889988777999
Q ss_pred HHHHHhcCCCc------------hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHH----hc
Q 003409 125 NAIRVLCRITD------------GTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEA----VQ 188 (822)
Q Consensus 125 lALr~l~~I~~------------~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~l----l~ 188 (822)
.|+|+++.+.. ..+++.++..+...+.+.+....+.+..++..+....|.+++..+..+-.. ..
T Consensus 178 ~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~ 257 (1075)
T KOG2171|consen 178 AAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAK 257 (1075)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Confidence 99999987521 223444444555556667777889999999999888998888655544332 22
Q ss_pred C--CChhHHHHHHHHHHHHHhcChHHH-------HHHHHHh----cCCCCCChhHH----------------HHHHHHHH
Q 003409 189 S--RAALVQFHALALLHQIRQNDRLAV-------SKLVTSL----TRGTVRSPLAQ----------------CLLIRYTT 239 (822)
Q Consensus 189 d--~~~~V~~~al~lL~~i~~~d~~~i-------~~Li~~l----~~~~~~~~w~~----------------v~llr~l~ 239 (822)
+ -+.++-..|+.++.-+.+.-|.-. ..|+..+ .-...-.+|.- ...|..++
T Consensus 258 n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA 337 (1075)
T KOG2171|consen 258 NKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLA 337 (1075)
T ss_pred cccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHH
Confidence 2 256777778777765554422222 2222211 00000012221 22222222
Q ss_pred hhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChH----hHhhHHHHHHHHhcCCCchhHHHHHHhh
Q 003409 240 QVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNR----ELTPAITVLQLFLSSSKPVLRFAAVRTL 315 (822)
Q Consensus 240 ~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~----~~~~a~~~L~~~l~s~~~n~ry~aL~~l 315 (822)
.-++. ......+++.+...|+|.+-.-...|..+|-.+....++ .+.++....-.+|+.+.|-+||+|+..+
T Consensus 338 ~~L~g----~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~nai 413 (1075)
T KOG2171|consen 338 LHLGG----KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAI 413 (1075)
T ss_pred hcCCh----hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 21111 122345667777778888777777777777666533333 3456777777899999999999999988
Q ss_pred cc----------------------CcCCCCc-hhhHHHHHHHHh---ccCCcchHHHHHHHHHH----hh-hhcCHHHHH
Q 003409 316 NK----------------------SLISDQN-RSIATLAITTLL---KTGNESSVDRLMKQITN----FM-SDIADEFKI 364 (822)
Q Consensus 316 ~~----------------------~lL~d~d-~sIr~~aL~lL~---~l~ne~Nv~~Iv~eL~~----y~-~~~~~~~k~ 364 (822)
.+ ..+.|+. .-+..-|---|. .=|..+=+..-++.|.+ .+ ..-....+.
T Consensus 414 gQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e 493 (1075)
T KOG2171|consen 414 GQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQE 493 (1075)
T ss_pred HhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 76 1112221 233333333333 22333333333333333 22 334567889
Q ss_pred HHHHHHHHHHH----hCcccHHHHHHHHHHHHhh
Q 003409 365 VVVEAIRSLCL----KFPLKYRSLMNFLSNILRE 394 (822)
Q Consensus 365 ~~v~aI~~la~----k~~~~~~~~v~~l~~lL~~ 394 (822)
.++.+|+..|. +|-+-++..+..|..+|..
T Consensus 494 ~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n 527 (1075)
T KOG2171|consen 494 QAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQN 527 (1075)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhC
Confidence 99999999986 4444445555555555554
No 35
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=97.94 E-value=0.0026 Score=71.29 Aligned_cols=106 Identities=16% Similarity=0.217 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCC----chhHHHhhheecCCCCCCCCCh---HHHHHHHHhh------
Q 003409 400 YKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCE----FTYLSTQILHFLGTEGPKTSDP---SKYIRYIYNR------ 466 (822)
Q Consensus 400 v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~----~~~~~~~i~wiLGEy~~~~~~~---~~~i~~i~~~------ 466 (822)
|.+-..+.+..+.+++|.+-...-+.+.+++.... -.+.....+|+||||+...-+. .+.++..|+.
T Consensus 284 V~rvlss~ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~LE~lly 363 (459)
T PF14764_consen 284 VRRVLSSQLLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEALEALLY 363 (459)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhcccccccCCccCHHHHHHHHHHHHHHHH
Confidence 33334455667788899876655666667765432 3466788999999998765554 4444444321
Q ss_pred --c--c--------CCCHHHHHHHHHHHHHHhhccccchHHHHHHHHHHhc
Q 003409 467 --V--H--------LENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLY 505 (822)
Q Consensus 467 --~--~--------~e~~~vr~~~ltal~K~~~~~~~~~~~i~~ll~~~~~ 505 (822)
. . ...+.+-..++||++|++.|++|+.+++...|.+..+
T Consensus 364 E~~~~~~~~~~~~~~~~~rl~~~lmt~laKLAsr~~dl~pRv~l~LsK~~~ 414 (459)
T PF14764_consen 364 EVTQSRRDPSASRPSSQPRLMTVLMTALAKLASRSQDLIPRVSLCLSKMRT 414 (459)
T ss_pred HHhhccccccccCCCCchhHHHHHHHHHHHHHHhCHhhhHHHHHHHHHHHH
Confidence 1 1 2245566788999999999999999999888888766
No 36
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0075 Score=70.51 Aligned_cols=269 Identities=19% Similarity=0.205 Sum_probs=164.5
Q ss_pred chhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHH
Q 003409 135 DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS 214 (822)
Q Consensus 135 ~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~ 214 (822)
..++.--+...+++=|.|++.||---|+.++-.++ +||+++...+++.+++..+++-+.--|+..++.+.+..|..+.
T Consensus 101 ~qdvllLltNslknDL~s~nq~vVglAL~alg~i~--s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e 178 (866)
T KOG1062|consen 101 RQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNIC--SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE 178 (866)
T ss_pred chHHHHHHHHHHHhhccCCCeeehHHHHHHhhccC--CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH
Confidence 45577778899999999999999999988888885 7999999999999999999998877665444444444454333
Q ss_pred HHHHH----hc---CCCCCChhHHHHHHHHHHhhhhcccCCCC-------CchhhHHHHHHHhcc-----------CChh
Q 003409 215 KLVTS----LT---RGTVRSPLAQCLLIRYTTQVIREAATTQT-------GDRPFYDFLESCLRH-----------KAEM 269 (822)
Q Consensus 215 ~Li~~----l~---~~~~~~~w~~v~llr~l~~~~~~~~~d~~-------~~~~l~~~l~~~L~~-----------~~~a 269 (822)
.+++. +. .| +.. -+.+.+.+++.. +|+ ....++.+|.++..+ +.|=
T Consensus 179 ~f~~~~~~lL~ek~hG-VL~-~~l~l~~e~c~~-------~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPF 249 (866)
T KOG1062|consen 179 HFVIAFRKLLCEKHHG-VLI-AGLHLITELCKI-------SPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPF 249 (866)
T ss_pred HhhHHHHHHHhhcCCc-eee-eHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchH
Confidence 22221 11 11 110 112222233221 111 112233333333322 1233
Q ss_pred hHHHHHHHHhhccCCChHhHhhHHHHHHH-----------------------HhcCCCchhHHHHHHhhccCcCCCCchh
Q 003409 270 VIFEAARAITELNGVTNRELTPAITVLQL-----------------------FLSSSKPVLRFAAVRTLNKSLISDQNRS 326 (822)
Q Consensus 270 V~~ea~~~i~~l~~~~~~~~~~a~~~L~~-----------------------~l~s~~~n~ry~aL~~l~~~lL~d~d~s 326 (822)
...+..+++--+.......-.....+|.. +.-.+++.+|-+|+..|.|++++ +|..
T Consensus 250 LQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n-~d~N 328 (866)
T KOG1062|consen 250 LQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLN-RDNN 328 (866)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcC-Cccc
Confidence 33344444333322111111111112222 12223445666666666665554 4567
Q ss_pred hHHHHHHHHhccCCcch--HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHH
Q 003409 327 IATLAITTLLKTGNESS--VDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAI 404 (822)
Q Consensus 327 Ir~~aL~lL~~l~ne~N--v~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~i 404 (822)
||-.||+.|+++++.+. |++==.-+.+.+.+.|..+|+.+..=...|.. ....+.+++-|+.+|... +-+++.++
T Consensus 329 irYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn--~~Nv~~mv~eLl~fL~~~-d~~~k~~~ 405 (866)
T KOG1062|consen 329 IRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN--ESNVRVMVKELLEFLESS-DEDFKADI 405 (866)
T ss_pred eeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHhc-cHHHHHHH
Confidence 99999999998876554 33333567788999999999988876655553 367789999999999875 55699999
Q ss_pred HHHHHHHHHhC-Cch
Q 003409 405 VDSIVILIRDI-PDA 418 (822)
Q Consensus 405 v~~i~~iv~~~-p~~ 418 (822)
+..|..++.++ |+.
T Consensus 406 as~I~~laEkfaP~k 420 (866)
T KOG1062|consen 406 ASKIAELAEKFAPDK 420 (866)
T ss_pred HHHHHHHHHhcCCcc
Confidence 99999999876 544
No 37
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.0075 Score=67.90 Aligned_cols=285 Identities=19% Similarity=0.180 Sum_probs=171.8
Q ss_pred HHHHHHhc-CCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHH----HHHHHHHHhcCCChhHHHHH
Q 003409 124 ANAIRVLC-RITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKR----WSNEVQEAVQSRAALVQFHA 198 (822)
Q Consensus 124 ~lALr~l~-~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~----~~~~l~~ll~d~~~~V~~~a 198 (822)
|+|.-++| ...+....+.+.++|..|+.|++.-||--|+-++|.+.+.....+.. ....+..+..|.+.+|...|
T Consensus 66 GlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a 145 (675)
T KOG0212|consen 66 GLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA 145 (675)
T ss_pred HHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH
Confidence 44444443 22333378889999999999999999999999999877655443333 44445556668888887655
Q ss_pred H---HHHHHHHhcCh--HHHHHHHHHhc-CCCCCChhHHHHHHHHHHhhhhcccCCCC-----CchhhHHHHHHHhccCC
Q 003409 199 L---ALLHQIRQNDR--LAVSKLVTSLT-RGTVRSPLAQCLLIRYTTQVIREAATTQT-----GDRPFYDFLESCLRHKA 267 (822)
Q Consensus 199 l---~lL~~i~~~d~--~~i~~Li~~l~-~~~~~~~w~~v~llr~l~~~~~~~~~d~~-----~~~~l~~~l~~~L~~~~ 267 (822)
= .++-+|..+.. -.+..+++-+. .-...+|..-..++.-+..+.- -|. .-..+++-|-..|...+
T Consensus 146 eLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds----~P~~~m~~yl~~~ldGLf~~LsD~s 221 (675)
T KOG0212|consen 146 ELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS----VPDLEMISYLPSLLDGLFNMLSDSS 221 (675)
T ss_pred HHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc----CCcHHHHhcchHHHHHHHHHhcCCc
Confidence 2 13333332211 12333443221 0003456666666665544311 122 11234555566666677
Q ss_pred hhhHHHHHHHHh----hccCCChH-hHhhHHHHHHHHhcCCCchhHHHHHHhhcc---------------------CcCC
Q 003409 268 EMVIFEAARAIT----ELNGVTNR-ELTPAITVLQLFLSSSKPVLRFAAVRTLNK---------------------SLIS 321 (822)
Q Consensus 268 ~aV~~ea~~~i~----~l~~~~~~-~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~---------------------~lL~ 321 (822)
+.|.--|=.++. .+.+.|.. .....++++..-+.++++.++..||.-+.. +|+.
T Consensus 222 ~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s 301 (675)
T KOG0212|consen 222 DEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLS 301 (675)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCC
Confidence 666643333322 23333333 344555666666666676666655544322 6777
Q ss_pred CCch-hhHHHHH---HHHhccCCcchHH------HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccH----HHHHHH
Q 003409 322 DQNR-SIATLAI---TTLLKTGNESSVD------RLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKY----RSLMNF 387 (822)
Q Consensus 322 d~d~-sIr~~aL---~lL~~l~ne~Nv~------~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~----~~~v~~ 387 (822)
|.+. +|+-.|- ..|++++++.--. .|++-|..|+.+-..+-|..+.+-|..|-.|+|+.. ..+..+
T Consensus 302 ~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~t 381 (675)
T KOG0212|consen 302 DTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLT 381 (675)
T ss_pred CCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHH
Confidence 7765 5664332 2466776665443 899999999998888999999999999999999754 466777
Q ss_pred HHHHHhhcCCcchHHHHHHHHHHHHH
Q 003409 388 LSNILREEGGFEYKKAIVDSIVILIR 413 (822)
Q Consensus 388 l~~lL~~~g~~~v~~~iv~~i~~iv~ 413 (822)
|++-|.+..+. |..-....+..|..
T Consensus 382 LL~tLsd~sd~-vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 382 LLKTLSDRSDE-VVLLALSLLASICS 406 (675)
T ss_pred HHHhhcCchhH-HHHHHHHHHHHHhc
Confidence 78888765443 54555566656554
No 38
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.001 Score=77.45 Aligned_cols=385 Identities=16% Similarity=0.211 Sum_probs=211.8
Q ss_pred HHHHHHHHhcCCCCCccchhhhh-hhhhhhcccCCccchhHHHHHHHHhCCCC--cchhhhhhhHHhhcCCCCHHHHHHH
Q 003409 50 ITKLLYLLNQGETFTKIEATEVF-FAVTKLFQSRDIGLRRMVYLMIKELSPSA--DEVIIVTSSLMKDMTSKTDMYRANA 126 (822)
Q Consensus 50 l~kli~~~~~G~~f~~~e~s~lf-~~v~kl~~s~d~~lKrl~YL~l~~~~~~~--~~~lLviNsl~kDl~~~n~~vr~lA 126 (822)
+||+.|++..-|.-++-+.+.++ ..+.|=+.+.+..+|-+ ++..+.... ...--.++-+++=++|.++++|--|
T Consensus 65 lKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~l---Alrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRkta 141 (734)
T KOG1061|consen 65 LKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRAL---ALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTA 141 (734)
T ss_pred HHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHH---HhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHH
Confidence 78898887765533333433332 22345556666665543 332222222 2234567899999999999999777
Q ss_pred HHHhcCCC--chhhHH--HHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChh-----HHHHHHHHHHHHhcCCChhHHHH
Q 003409 127 IRVLCRIT--DGTLLT--QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPE-----IVKRWSNEVQEAVQSRAALVQFH 197 (822)
Q Consensus 127 Lr~l~~I~--~~~~~~--~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe-----~v~~~~~~l~~ll~d~~~~V~~~ 197 (822)
--...++. ++++.. .+...++.++.|.+|-|--+|+-++.-+....|+ +...+++.+.+.+++-+---+.-
T Consensus 142 a~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~ 221 (734)
T KOG1061|consen 142 AVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIF 221 (734)
T ss_pred HHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHH
Confidence 66666543 445554 3888999999999999999999888777665542 33344444444444333333333
Q ss_pred HHHHHHHHHhcChHHHHHHHH----HhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHH----HHhccCChh
Q 003409 198 ALALLHQIRQNDRLAVSKLVT----SLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLE----SCLRHKAEM 269 (822)
Q Consensus 198 al~lL~~i~~~d~~~i~~Li~----~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~----~~L~~~~~a 269 (822)
.+..+.+-.+.|......++. .+.+....-...-++++..+..++. ...+.++.-+. .++.+.+ .
T Consensus 222 IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~------~~~~~~~~K~~~pl~tlls~~~-e 294 (734)
T KOG1061|consen 222 ILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLK------QVNELLFKKVAPPLVTLLSSES-E 294 (734)
T ss_pred HHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHH------HHHHHHHHHhcccceeeecccc-h
Confidence 333444444554433333333 2221111112333444444333321 11112222222 1222222 4
Q ss_pred hHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCch-hHHHHHHhhcc---------------CcCCCCchhhHHHHHH
Q 003409 270 VIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPV-LRFAAVRTLNK---------------SLISDQNRSIATLAIT 333 (822)
Q Consensus 270 V~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n-~ry~aL~~l~~---------------~lL~d~d~sIr~~aL~ 333 (822)
+.|=|.+-|..+-..-++.+ ...+..-|++-+||- ++..-++.+.+ ..-.+-|....++++.
T Consensus 295 ~qyvaLrNi~lil~~~p~~~--~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIr 372 (734)
T KOG1061|consen 295 IQYVALRNINLILQKRPEIL--KVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVR 372 (734)
T ss_pred hhHHHHhhHHHHHHhChHHH--HhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHH
Confidence 55555544433321112222 223333455555554 23333333322 2336667778888888
Q ss_pred HHhccCCc-chHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Q 003409 334 TLLKTGNE-SSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILI 412 (822)
Q Consensus 334 lL~~l~ne-~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv 412 (822)
.+..++-. +-....+..|++.+.---+-...+++.-|..+-.|||.+++.++..+...+..-.+-+ +-..+..|+
T Consensus 373 aig~~aik~e~~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epe----ak~amiWil 448 (734)
T KOG1061|consen 373 AIGRLAIKAEQSNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPE----AKAALIWIL 448 (734)
T ss_pred HhhhhhhhhhhhhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCChH----HHHHHHHHH
Confidence 77655421 1116788888887764334467788999999999999999988888876665433332 344566777
Q ss_pred HhCCchHHHHHHHHHHHhhcCCch------hHHHhhheecCCCC
Q 003409 413 RDIPDAKENGLLHLCEFIEDCEFT------YLSTQILHFLGTEG 450 (822)
Q Consensus 413 ~~~p~~~~~~l~~L~~~l~~~~~~------~~~~~i~wiLGEy~ 450 (822)
.++++.-+.+...|-.+++..... +++.+++-+.+..+
T Consensus 449 g~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p 492 (734)
T KOG1061|consen 449 GEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLKKP 492 (734)
T ss_pred hhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCC
Confidence 777777666666777777655332 33444555444444
No 39
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.73 E-value=0.034 Score=64.44 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=76.6
Q ss_pred hhhhhhhhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhh
Q 003409 71 VFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAI 150 (822)
Q Consensus 71 lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l 150 (822)
+.+.|--++-..|+.-+-+|--.+++++.-.....+ +++++-|+.+.+||+|--.-|+.+-+.+.-=++.+.+.++...
T Consensus 442 ILvViepllided~yar~egreIisnLakaaGla~m-istmrpDidn~deYVRnttarafavvasalgip~llpfLkavc 520 (1172)
T KOG0213|consen 442 ILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATM-ISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVC 520 (1172)
T ss_pred eEEEeecceecchHHHhhchHHHHHHHHHHhhhHHH-HHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 333333455567777777776666666554444443 5799999999999999887777776655555666777777777
Q ss_pred cCC-CHHHHHHHHHHHHhhcccC----hhHHHHHHHHHHHHhcCCCh---hHHHHHHHHHHH
Q 003409 151 VDK-NPVVASAALVSGIHLLQTT----PEIVKRWSNEVQEAVQSRAA---LVQFHALALLHQ 204 (822)
Q Consensus 151 ~d~-~p~VRk~A~la~~~l~~~~----pe~v~~~~~~l~~ll~d~~~---~V~~~al~lL~~ 204 (822)
.++ +.--|.+.+-++-++.-.. -.-++.++..+...+.|++. ++..+|++.|.+
T Consensus 521 ~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalae 582 (1172)
T KOG0213|consen 521 GSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAE 582 (1172)
T ss_pred ccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHH
Confidence 665 4444444444433322100 01123355555555555543 233444444443
No 40
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.66 E-value=0.005 Score=73.12 Aligned_cols=134 Identities=19% Similarity=0.220 Sum_probs=99.8
Q ss_pred HHHHHHHHhcCCC-CCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHH
Q 003409 50 ITKLLYLLNQGET-FTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIR 128 (822)
Q Consensus 50 l~kli~~~~~G~~-f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr 128 (822)
+|||+|++..-+. +...+|--....+.|=++++|..+|-+.-=++ ......+.+--+.+++++=++|+++++|..|.=
T Consensus 71 lKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~l-s~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aal 149 (757)
T COG5096 71 LKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTL-SLLRVKELLGNIIDPIKKLLTDPHAYVRKTAAL 149 (757)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHccCCcHHHHHHHHH
Confidence 8999998876431 22346666667788889999999998877777 444445556678899999999999999999988
Q ss_pred HhcCC--CchhhHHHH-HHH-HHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHh
Q 003409 129 VLCRI--TDGTLLTQI-ERY-LKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAV 187 (822)
Q Consensus 129 ~l~~I--~~~~~~~~l-~~~-v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll 187 (822)
++.++ .+++++... .-. .+.++.|.+|-|-++|+.++.-+++. ..+.|..+....+
T Consensus 150 av~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e---~a~~~~~~~~~~i 209 (757)
T COG5096 150 AVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE---LAHGYSLEVILRI 209 (757)
T ss_pred HHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh---hhhhHHHHHHHHh
Confidence 88887 477777776 444 45555699999999999999887654 4555555554433
No 41
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=97.62 E-value=0.00053 Score=61.43 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=74.6
Q ss_pred cccCc--CchHHHHhhcCCCceeEEEEecCCCCcHHHHHHHHHHhhCCcccCCCccccCCCccceEEEEEEEecCce-EE
Q 003409 709 MKVGV--SNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVK-VL 785 (822)
Q Consensus 709 ~p~~~--~~F~~~W~~~~~~~e~~~~~~l~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ag~~~~~~~-vl 785 (822)
+|..+ ++|.++|..++ +|...+..-++..++.+..+.+.+.+|+++++-.. . -..+||...++.+ +|
T Consensus 1 RPl~isTeeFG~~W~s~~--~e~k~~l~~~~~~t~~~~l~~l~~~l~lh~VevIg---~-----E~I~A~~ll~~~~~~L 70 (104)
T PF14807_consen 1 RPLQISTEEFGQLWLSFS--NERKQNLPSSSQRTLPEFLQRLQQKLRLHVVEVIG---N-----EGIFACQLLNSSPVCL 70 (104)
T ss_pred CCccccHHHHHHHHHcCC--CeEEEeccccCcCCHHHHHHHHHHhcCceEEEEeC---c-----cceeeeeccCCCCeEE
Confidence 35555 37999999985 34444443236777899999999999999998433 1 5678999888777 99
Q ss_pred EEEEEeecCCcceEEEEEEecCCcchHHHHHHHH
Q 003409 786 VRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIV 819 (822)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~vRs~~~~v~~~v~~~~ 819 (822)
+.||+. . + .+.+++||.+..+++.|+..+
T Consensus 71 ~H~~~~--~--~-~l~l~vrs~~~~l~d~ll~~~ 99 (104)
T PF14807_consen 71 LHCRVN--A--G-TLDLWVRSSDSPLTDCLLYQC 99 (104)
T ss_pred EEEEec--C--C-eEEEEEEcCCCCcHHHHHHHH
Confidence 999993 2 3 899999999999999998765
No 42
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.021 Score=65.54 Aligned_cols=383 Identities=15% Similarity=0.143 Sum_probs=197.7
Q ss_pred hhhcccCCccchhHHHHHHHHhCCCCcc-hhhhhhhHHhhcCCCCHHHHHHH-------HHHhcCCCchhhHHHHHHHHH
Q 003409 76 TKLFQSRDIGLRRMVYLMIKELSPSADE-VIIVTSSLMKDMTSKTDMYRANA-------IRVLCRITDGTLLTQIERYLK 147 (822)
Q Consensus 76 ~kl~~s~d~~lKrl~YL~l~~~~~~~~~-~lLviNsl~kDl~~~n~~vr~lA-------Lr~l~~I~~~~~~~~l~~~v~ 147 (822)
.|..+|+|...+|-+--.+..+-..++. -.|+ -+.-++.+.+...|++| +|.=.+-..++...++-..+.
T Consensus 19 Lk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~--~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l 96 (885)
T KOG2023|consen 19 LKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLI--YILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECL 96 (885)
T ss_pred HHhccCCChHHHHHHHHHHHHHhcccchhceee--EEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHH
Confidence 3445577777777666666333222221 1111 11223455555566665 333334445677777888888
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcccCh-hHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Q 003409 148 QAIVDKNPVVASAALVSGIHLLQTTP-EIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVR 226 (822)
Q Consensus 148 ~~l~d~~p~VRk~A~la~~~l~~~~p-e~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~ 226 (822)
+++.|.+|.||-..-.-+--+....- .-=.+.++.+.++|.+.+...+--|+++|..|+.+...-+.. +.. ..|
T Consensus 97 ~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds---~~~--~rp 171 (885)
T KOG2023|consen 97 HGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDS---DVL--TRP 171 (885)
T ss_pred hhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhh---hcc--cCc
Confidence 88999999997654433333322110 000235566778888888777778899999998863221110 000 011
Q ss_pred ChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhcc-CCChHhHh---hHHHHHHHHhcC
Q 003409 227 SPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELN-GVTNRELT---PAITVLQLFLSS 302 (822)
Q Consensus 227 ~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~-~~~~~~~~---~a~~~L~~~l~s 302 (822)
.... ++.+..+.+|.++.+.-.|+.++-.+- ..+.++.. .....|-.+-+.
T Consensus 172 l~~m-------------------------ipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD 226 (885)
T KOG2023|consen 172 LNIM-------------------------IPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALAND 226 (885)
T ss_pred hHHh-------------------------HHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccC
Confidence 1122 222222333333333333333332110 00122211 111222222233
Q ss_pred CCchhHHHHHHhhcc---------------------CcCCCCchhhHHHHHHHHhccCCcchHHHHH--------HHHHH
Q 003409 303 SKPVLRFAAVRTLNK---------------------SLISDQNRSIATLAITTLLKTGNESSVDRLM--------KQITN 353 (822)
Q Consensus 303 ~~~n~ry~aL~~l~~---------------------~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv--------~eL~~ 353 (822)
.++++|=-..+.+.. ....|.|..|+..|=+..++++...=...++ .-|.+
T Consensus 227 ~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~ 306 (885)
T KOG2023|consen 227 EDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLS 306 (885)
T ss_pred CCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHc
Confidence 444444222222110 2236677777777777777776554333222 11111
Q ss_pred ---h-------hh---------h--------------------------cCH-----------HHHHHHHHHHHHHHHhC
Q 003409 354 ---F-------MS---------D--------------------------IAD-----------EFKIVVVEAIRSLCLKF 377 (822)
Q Consensus 354 ---y-------~~---------~--------------------------~~~-----------~~k~~~v~aI~~la~k~ 377 (822)
| +. + -++ ..|+=...++..|+.-|
T Consensus 307 ~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf 386 (885)
T KOG2023|consen 307 GMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVF 386 (885)
T ss_pred cCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhh
Confidence 1 00 0 000 14666777888888877
Q ss_pred cccHHHHHHHHHHHHhhc---CCcchHHHHHHHHHHHHHh-----CCchHHHHHHHHHHHhhcCCchhHHHhhheecCCC
Q 003409 378 PLKYRSLMNFLSNILREE---GGFEYKKAIVDSIVILIRD-----IPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTE 449 (822)
Q Consensus 378 ~~~~~~~v~~l~~lL~~~---g~~~v~~~iv~~i~~iv~~-----~p~~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy 449 (822)
+. .+++.++.+|+.. ....++++.+-++-.|... +|-+- .++..|...+.| +.+-++...+|-|+.|
T Consensus 387 ~~---elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLip~l~~~L~D-KkplVRsITCWTLsRy 461 (885)
T KOG2023|consen 387 GD---ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP-ELIPFLLSLLDD-KKPLVRSITCWTLSRY 461 (885)
T ss_pred HH---HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH-HHHHHHHHHhcc-CccceeeeeeeeHhhh
Confidence 64 4566666666542 2344666666666666653 23332 234455555544 2344555568999999
Q ss_pred CCCCC--ChHHHH----HHHHhhccCCCHHHHHHHHHHHHHHhhcc-ccchHH
Q 003409 450 GPKTS--DPSKYI----RYIYNRVHLENATVRAAAVSTLAKFGAMV-DALKPR 495 (822)
Q Consensus 450 ~~~~~--~~~~~i----~~i~~~~~~e~~~vr~~~ltal~K~~~~~-~~~~~~ 495 (822)
++.+. .+.+++ ..+.+++...+..|+-++-+|++-|-... +++-|-
T Consensus 462 s~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~ 514 (885)
T KOG2023|consen 462 SKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPY 514 (885)
T ss_pred hhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHH
Confidence 98652 233444 55667777889999999999988877654 355443
No 43
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.33 Score=56.45 Aligned_cols=353 Identities=16% Similarity=0.174 Sum_probs=191.4
Q ss_pred CCccchhHHHHHHHHhCCCCcchhh-hhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHH
Q 003409 82 RDIGLRRMVYLMIKELSPSADEVII-VTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASA 160 (822)
Q Consensus 82 ~d~~lKrl~YL~l~~~~~~~~~~lL-viNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~ 160 (822)
+...+=||.|+|+.-+ .-+-..| ++|-| +.-.-+.-.+==+++..|-+ ...++..-+...|++=|.+++|-----
T Consensus 55 kKKYV~KLlyI~llg~--dIdFGhmEaV~LL-ss~kysEKqIGYl~is~L~n-~n~dl~klvin~iknDL~srn~~fv~L 130 (938)
T KOG1077|consen 55 KKKYVCKLLYIYLLGY--DIDFGHMEAVNLL-SSNKYSEKQIGYLFISLLLN-ENSDLMKLVINSIKNDLSSRNPTFVCL 130 (938)
T ss_pred hHHHHHHHHHHHHhcC--ccccchHHHHHHh-hcCCccHHHHhHHHHHHHHh-cchHHHHHHHHHHHhhhhcCCcHHHHH
Confidence 4444567889998542 1111111 12211 11112223444566666666 447888889999999999999987777
Q ss_pred HHHHHHhhcccChhHHHHHHHHHHHHhcCCCh---hHHHHHHHHHHHHHhcCh-----HHHHHHHHHhc---CCCCCChh
Q 003409 161 ALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAA---LVQFHALALLHQIRQNDR-----LAVSKLVTSLT---RGTVRSPL 229 (822)
Q Consensus 161 A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~---~V~~~al~lL~~i~~~d~-----~~i~~Li~~l~---~~~~~~~w 229 (822)
|+.|+..+= .-|..+.+...+..+|.+.+. .-+-+|+++|.-.+.... ....+++.-++ +|- -.
T Consensus 131 AL~~I~niG--~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv---~t 205 (938)
T KOG1077|consen 131 ALHCIANIG--SREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGV---VT 205 (938)
T ss_pred HHHHHHhhc--cHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccce---ee
Confidence 888877652 345666788888888876543 336789998887765421 11223332111 110 01
Q ss_pred HHHHHHHHHHhhhhc--------------------c----------cCCCCCchhhHHHHHHHhc---cCChhhHHHHHH
Q 003409 230 AQCLLIRYTTQVIRE--------------------A----------ATTQTGDRPFYDFLESCLR---HKAEMVIFEAAR 276 (822)
Q Consensus 230 ~~v~llr~l~~~~~~--------------------~----------~~d~~~~~~l~~~l~~~L~---~~~~aV~~ea~~ 276 (822)
+-.-++..+.++-++ + -+.|=..-+++++|..+=. ..+-+-++|+..
T Consensus 206 a~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~ 285 (938)
T KOG1077|consen 206 AATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLE 285 (938)
T ss_pred ehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHH
Confidence 112223333222110 0 0000000111111111100 012334445555
Q ss_pred HHhhccCCChH---h-HhhHHHH-----HH-HHhcCCCchhHHHHHHhhccCcCCCCchhhHHHHHHHHhccCCcchHHH
Q 003409 277 AITELNGVTNR---E-LTPAITV-----LQ-LFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDR 346 (822)
Q Consensus 277 ~i~~l~~~~~~---~-~~~a~~~-----L~-~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~ 346 (822)
.|+.....+++ . ...|.+. +. .+...+++++---++..|. .+|.+....||-+||+.+.++|+.+-...
T Consensus 286 ~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg-~fls~rE~NiRYLaLEsm~~L~ss~~s~d 364 (938)
T KOG1077|consen 286 RILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLG-QFLSHRETNIRYLALESMCKLASSEFSID 364 (938)
T ss_pred HHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HHhhcccccchhhhHHHHHHHHhccchHH
Confidence 55444321111 0 0011110 00 0111122222111111110 57778778899999999999999888777
Q ss_pred HHH----HHHHhhh-hcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhC-Cch--
Q 003409 347 LMK----QITNFMS-DIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDI-PDA-- 418 (822)
Q Consensus 347 Iv~----eL~~y~~-~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~-p~~-- 418 (822)
.|+ .+..-+. +-|..+|+.+++-+-.+|.+ +.+..+|+-|++.|.. .+|.++++++.-+.-+.+++ +|.
T Consensus 365 avK~h~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~IV~elLqYL~t-Ad~sireeivlKvAILaEKyAtDy~W 441 (938)
T KOG1077|consen 365 AVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQIVAELLQYLET-ADYSIREEIVLKVAILAEKYATDYSW 441 (938)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHhcCCcch
Confidence 774 2333444 77888999999999999988 7888999999999987 57778888876665555554 232
Q ss_pred HHHHHHHHHHHhhcCCchhHHHhhheecC
Q 003409 419 KENGLLHLCEFIEDCEFTYLSTQILHFLG 447 (822)
Q Consensus 419 ~~~~l~~L~~~l~~~~~~~~~~~i~wiLG 447 (822)
+..++-+|.+.-.|....++--+++.|+-
T Consensus 442 yVdviLqLiriagd~vsdeVW~RvvQiVv 470 (938)
T KOG1077|consen 442 YVDVILQLIRIAGDYVSDEVWYRVVQIVV 470 (938)
T ss_pred hHHHHHHHHHHhcccccHHHHHHhheeEe
Confidence 34455566665556655666555555543
No 44
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.39 E-value=0.064 Score=64.28 Aligned_cols=283 Identities=16% Similarity=0.177 Sum_probs=158.4
Q ss_pred hhHHhhcCCCCHHHHHHHHHHhcCCCc-----hhhHH-HHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhH----HH-
Q 003409 109 SSLMKDMTSKTDMYRANAIRVLCRITD-----GTLLT-QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEI----VK- 177 (822)
Q Consensus 109 Nsl~kDl~~~n~~vr~lALr~l~~I~~-----~~~~~-~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~----v~- 177 (822)
..|.+=|.+.|+....+|+++|.++.. ..|.+ .+++.+.+.+...++-++..|+-.++.|-- +++. ++
T Consensus 293 ~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~ 371 (708)
T PF05804_consen 293 SLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVSL 371 (708)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHC
Confidence 445556678899999999999988752 23433 378888999999998899999888888742 3333 33
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChH--------HHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCC
Q 003409 178 RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL--------AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQ 249 (822)
Q Consensus 178 ~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~--------~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~ 249 (822)
.+++.+..++.+.+ ....++.+||.++.+|+. .+..++..+..+ +.+=.++.++.++..+. . ++
T Consensus 372 GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~--~~~~v~~eliaL~iNLa-~---~~ 443 (708)
T PF05804_consen 372 GLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN--SEEEVQLELIALLINLA-L---NK 443 (708)
T ss_pred CCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC--CCccccHHHHHHHHHHh-c---CH
Confidence 37788889887654 334578899999887531 122233333211 11222233333333321 1 22
Q ss_pred CCchh------hHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCC
Q 003409 250 TGDRP------FYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQ 323 (822)
Q Consensus 250 ~~~~~------l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~ 323 (822)
...+. +-.++...++ .....++..+|.|...+......+...+..|...+++.+
T Consensus 444 rnaqlm~~g~gL~~L~~ra~~-~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~------------------- 503 (708)
T PF05804_consen 444 RNAQLMCEGNGLQSLMKRALK-TRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGD------------------- 503 (708)
T ss_pred HHHHHHHhcCcHHHHHHHHHh-cccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCC-------------------
Confidence 22222 2223333333 445677777777765542112223333333334444322
Q ss_pred chhhHHHHHHHHhccCC-cchHHHHHHH--HHHhhh------hcCHHHHHHHHHHHHHHHHhCcccHHH-----HHHHHH
Q 003409 324 NRSIATLAITTLLKTGN-ESSVDRLMKQ--ITNFMS------DIADEFKIVVVEAIRSLCLKFPLKYRS-----LMNFLS 389 (822)
Q Consensus 324 d~sIr~~aL~lL~~l~n-e~Nv~~Iv~e--L~~y~~------~~~~~~k~~~v~aI~~la~k~~~~~~~-----~v~~l~ 389 (822)
+.+..-.+|-+|-.+.. +-+...++++ |..|+. ...++..-++|.-+|.+|. .|..+.. +++.|+
T Consensus 504 ~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li 582 (708)
T PF05804_consen 504 SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLI 582 (708)
T ss_pred cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHH
Confidence 33444555555544432 2245555542 444432 2456788899999998884 3444443 467788
Q ss_pred HHHhhcC-CcchHHHHHHHHHHHHHhCCchHHHH
Q 003409 390 NILREEG-GFEYKKAIVDSIVILIRDIPDAKENG 422 (822)
Q Consensus 390 ~lL~~~g-~~~v~~~iv~~i~~iv~~~p~~~~~~ 422 (822)
++|.... +.++.-+++.++.+++. +++.++.+
T Consensus 583 ~LL~~kqeDdE~VlQil~~f~~ll~-h~~tr~~l 615 (708)
T PF05804_consen 583 ELLNAKQEDDEIVLQILYVFYQLLF-HEETREVL 615 (708)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHc-ChHHHHHH
Confidence 8887532 33455556666666665 45555543
No 45
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.33 E-value=0.0009 Score=58.22 Aligned_cols=83 Identities=22% Similarity=0.195 Sum_probs=61.2
Q ss_pred hhHHhhc-CCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHh
Q 003409 109 SSLMKDM-TSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAV 187 (822)
Q Consensus 109 Nsl~kDl-~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll 187 (822)
..|.+-| +++|+.+|..|+++|+.+++++. .+.+.+++.|.+|.||..|+.++.++- .|+ .++.+.+++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~i~--~~~----~~~~L~~~l 71 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDPEA----IPALIELLKDEDPMVRRAAARALGRIG--DPE----AIPALIKLL 71 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHHHH----HHHHHHHHTSSSHHHHHHHHHHHHCCH--HHH----THHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHhH----HHHHHHHHcCCCHHHHHHHHHHHHHhC--CHH----HHHHHHHHH
Confidence 4566777 89999999999999999998855 555666678999999999999999872 333 444445555
Q ss_pred cC-CChhHHHHHHHH
Q 003409 188 QS-RAALVQFHALAL 201 (822)
Q Consensus 188 ~d-~~~~V~~~al~l 201 (822)
.+ .+..|..+|+..
T Consensus 72 ~~~~~~~vr~~a~~a 86 (88)
T PF13646_consen 72 QDDDDEVVREAAAEA 86 (88)
T ss_dssp TC-SSHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHhh
Confidence 54 445566666544
No 46
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.29 E-value=0.072 Score=60.26 Aligned_cols=129 Identities=17% Similarity=0.188 Sum_probs=84.2
Q ss_pred hhHHhhcCCCCHHHHH---HHHHHhcCCCchhhHHHHHHHHHHhhcCCCH-HHHHHHHHHHHhhcccChhHHHHHHHHHH
Q 003409 109 SSLMKDMTSKTDMYRA---NAIRVLCRITDGTLLTQIERYLKQAIVDKNP-VVASAALVSGIHLLQTTPEIVKRWSNEVQ 184 (822)
Q Consensus 109 Nsl~kDl~~~n~~vr~---lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p-~VRk~A~la~~~l~~~~pe~v~~~~~~l~ 184 (822)
=+|.|=.+|+|++.|- +|+.-|+.+...-+.. ...|.+-+....| .||-.|+-++.+++..+ .+..+-..+.
T Consensus 68 f~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm~--tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~--tv~~~er~l~ 143 (898)
T COG5240 68 FAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLMG--TSSIMKDLNGGVPDDVKPMAIRSLFSVIDGE--TVYDFERYLN 143 (898)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhhcchhhhHH--HHHHHHhhccCCccccccHHHHHHHHhcCcc--hhhhHHHHhh
Confidence 4678889999998874 6888888876554322 2334444445555 88889999998887533 3333333445
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHH-------Hh----------cCCCCCChhHHHHHHHHHHhh
Q 003409 185 EAVQSRAALVQFHALALLHQIRQNDRLAVSKLVT-------SL----------TRGTVRSPLAQCLLIRYTTQV 241 (822)
Q Consensus 185 ~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~-------~l----------~~~~~~~~w~~v~llr~l~~~ 241 (822)
...-++.+.+..+|++.-|++-+.....+.+-.+ ++ .+.+..+|..|-..+-++.+.
T Consensus 144 ~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~ 217 (898)
T COG5240 144 QAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQS 217 (898)
T ss_pred hhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHH
Confidence 6677778888888888888887765444444332 11 133456778887777777654
No 47
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.23 E-value=0.061 Score=59.40 Aligned_cols=194 Identities=21% Similarity=0.142 Sum_probs=123.3
Q ss_pred hhhhhhhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhc
Q 003409 72 FFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIV 151 (822)
Q Consensus 72 f~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~ 151 (822)
...+.+++.+++...|.-...++..+ ...-++..+.+-+.+.++.+|..|..+|+.+++++-++.+...+..
T Consensus 45 ~~~~~~~l~~~~~~vr~~aa~~l~~~-----~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~--- 116 (335)
T COG1413 45 ADELLKLLEDEDLLVRLSAAVALGEL-----GSEEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN--- 116 (335)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhh-----chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc---
Confidence 34456677888888887777666443 2334567788888999999999999999999999988888777776
Q ss_pred CCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChh-H
Q 003409 152 DKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPL-A 230 (822)
Q Consensus 152 d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w-~ 230 (822)
|.+.+||++|+.++.++-... . +..+.+++.+.++.+...+ + . +..| .
T Consensus 117 d~~~~vR~~aa~aL~~~~~~~--a----~~~l~~~l~~~~~~~a~~~---~-----~-----------------~~~~~~ 165 (335)
T COG1413 117 DENEGVRAAAARALGKLGDER--A----LDPLLEALQDEDSGSAAAA---L-----D-----------------AALLDV 165 (335)
T ss_pred CCcHhHHHHHHHHHHhcCchh--h----hHHHHHHhccchhhhhhhh---c-----c-----------------chHHHH
Confidence 889999999999998875432 1 3334455555554441111 0 0 0011 1
Q ss_pred HHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHH
Q 003409 231 QCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFA 310 (822)
Q Consensus 231 ~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~ 310 (822)
.-..+..+..+ . ++ .....+.+.+.+...-|...|+.++..+... . ..+...+..+++..+.++|..
T Consensus 166 r~~a~~~l~~~--~---~~----~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~-~---~~~~~~l~~~~~~~~~~vr~~ 232 (335)
T COG1413 166 RAAAAEALGEL--G---DP----EAIPLLIELLEDEDADVRRAAASALGQLGSE-N---VEAADLLVKALSDESLEVRKA 232 (335)
T ss_pred HHHHHHHHHHc--C---Ch----hhhHHHHHHHhCchHHHHHHHHHHHHHhhcc-h---hhHHHHHHHHhcCCCHHHHHH
Confidence 11222222221 1 22 2345556666666667777777777777532 1 234456677777777778888
Q ss_pred HHHhhcc
Q 003409 311 AVRTLNK 317 (822)
Q Consensus 311 aL~~l~~ 317 (822)
++..+.+
T Consensus 233 ~~~~l~~ 239 (335)
T COG1413 233 ALLALGE 239 (335)
T ss_pred HHHHhcc
Confidence 8777765
No 48
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.14 E-value=0.24 Score=56.61 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=86.4
Q ss_pred hhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCC-CH
Q 003409 77 KLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDK-NP 155 (822)
Q Consensus 77 kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~-~p 155 (822)
-++-..|+.-+-+|--.+..++.-..... .+.+++-|+.|.+||+|--.=|+.+-+.+.-=.+.+.+.++.+..++ +.
T Consensus 253 pllided~~~r~~g~eii~nL~~~~Gl~~-~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw 331 (975)
T COG5181 253 PLLIDEDLKRRCMGREIILNLVYRCGLGF-SVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSW 331 (975)
T ss_pred ccccCccHHHhcccHHHHHHHHHHhccce-eeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccch
Confidence 34455666666666444444443333333 35689999999999999888888887777777778888888888775 66
Q ss_pred HHHHHHHHHHHhhcccC----hhHHHHHHHHHHHHhcCCCh---hHHHHHHHHHHHHHh
Q 003409 156 VVASAALVSGIHLLQTT----PEIVKRWSNEVQEAVQSRAA---LVQFHALALLHQIRQ 207 (822)
Q Consensus 156 ~VRk~A~la~~~l~~~~----pe~v~~~~~~l~~ll~d~~~---~V~~~al~lL~~i~~ 207 (822)
--|.+.+-++-++.... -.-+..++..+.+++.|+.. ++..|+++.|.+...
T Consensus 332 ~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~ 390 (975)
T COG5181 332 EARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVG 390 (975)
T ss_pred hhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcC
Confidence 66666666655543211 12234577777888887753 556778777776543
No 49
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.10 E-value=0.11 Score=57.23 Aligned_cols=200 Identities=23% Similarity=0.249 Sum_probs=143.3
Q ss_pred hhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q 003409 106 IVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQE 185 (822)
Q Consensus 106 LviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ 185 (822)
.....+.+.+.++++.+|..|...++.+...+. .+.+.+.+.|.++.||..|+.++.++ ..|+.+..++..+..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~a----v~~l~~~l~d~~~~vr~~a~~aLg~~--~~~~a~~~li~~l~~ 116 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEEA----VPLLRELLSDEDPRVRDAAADALGEL--GDPEAVPPLVELLEN 116 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHHH----HHHHHHHhcCCCHHHHHHHHHHHHcc--CChhHHHHHHHHHHc
Confidence 466788899999999999999999999888765 45567888899999999999998887 456666655554433
Q ss_pred HhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhcc
Q 003409 186 AVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRH 265 (822)
Q Consensus 186 ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~ 265 (822)
|.+..|...+...|..+... .++..++..+.. ...+. ....+ . +.
T Consensus 117 ---d~~~~vR~~aa~aL~~~~~~--~a~~~l~~~l~~---~~~~~------a~~~~--~----~~--------------- 161 (335)
T COG1413 117 ---DENEGVRAAAARALGKLGDE--RALDPLLEALQD---EDSGS------AAAAL--D----AA--------------- 161 (335)
T ss_pred ---CCcHhHHHHHHHHHHhcCch--hhhHHHHHHhcc---chhhh------hhhhc--c----ch---------------
Confidence 67888988888888777654 456666655441 11111 00000 0 00
Q ss_pred CChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc-------------CcCCCCchhhHHHHH
Q 003409 266 KAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK-------------SLISDQNRSIATLAI 332 (822)
Q Consensus 266 ~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~-------------~lL~d~d~sIr~~aL 332 (822)
-..+.+.++..+..+.+ + .+...+..++...+..+|..|...+.+ ..+.|++..+|..++
T Consensus 162 -~~~~r~~a~~~l~~~~~-~-----~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~ 234 (335)
T COG1413 162 -LLDVRAAAAEALGELGD-P-----EAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKALSDESLEVRKAAL 234 (335)
T ss_pred -HHHHHHHHHHHHHHcCC-h-----hhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHHHHHHhcCCCHHHHHHHH
Confidence 00688888888877753 1 345677777777777788887777654 345889999999999
Q ss_pred HHHhccCCcchHHHHHHHHHH
Q 003409 333 TTLLKTGNESSVDRLMKQITN 353 (822)
Q Consensus 333 ~lL~~l~ne~Nv~~Iv~eL~~ 353 (822)
..|-.+..+..+..+++.+..
T Consensus 235 ~~l~~~~~~~~~~~l~~~l~~ 255 (335)
T COG1413 235 LALGEIGDEEAVDALAKALED 255 (335)
T ss_pred HHhcccCcchhHHHHHHHHhc
Confidence 999999988888887776553
No 50
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.032 Score=59.87 Aligned_cols=271 Identities=15% Similarity=0.147 Sum_probs=158.9
Q ss_pred hhcccCCccchhHHHHHHHHhCCCCcc--hhhhhhh---HHhhcCCCCHHHHHHHHHHhcCCCchhhHH-------HHHH
Q 003409 77 KLFQSRDIGLRRMVYLMIKELSPSADE--VIIVTSS---LMKDMTSKTDMYRANAIRVLCRITDGTLLT-------QIER 144 (822)
Q Consensus 77 kl~~s~d~~lKrl~YL~l~~~~~~~~~--~lLviNs---l~kDl~~~n~~vr~lALr~l~~I~~~~~~~-------~l~~ 144 (822)
-++||.|....+-+--++-.++-..+. ++..-+. +...+..++-.+||.|..++.++.+.+-.. .+.+
T Consensus 92 ~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~p 171 (550)
T KOG4224|consen 92 ALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEP 171 (550)
T ss_pred HHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhh
Confidence 357888888888887777667654322 3333344 667777788889999999999886654222 2444
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhhc---ccChhHHH-HHHHHHHHHhcCCChhHHHHHHHHHHHHHhc----------Ch
Q 003409 145 YLKQAIVDKNPVVASAALVSGIHLL---QTTPEIVK-RWSNEVQEAVQSRAALVQFHALALLHQIRQN----------DR 210 (822)
Q Consensus 145 ~v~~~l~d~~p~VRk~A~la~~~l~---~~~pe~v~-~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~----------d~ 210 (822)
+.++-..++--||+.|.-+++.+- ..-..+|. --++-+.+++...|+.|+|-+...+-.|.-+ .|
T Consensus 172 -ltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 172 -LTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred -hHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 444667788889999988877654 33334444 2556677888899999999887777666433 12
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhh-----HHHHHHHhccCChhhHHHHHHHHhhcc--C
Q 003409 211 LAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPF-----YDFLESCLRHKAEMVIFEAARAITELN--G 283 (822)
Q Consensus 211 ~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l-----~~~l~~~L~~~~~aV~~ea~~~i~~l~--~ 283 (822)
+-+.+|+.-+. ..++-.+|+---.+..+. . |.+....+ +..+..+|++..--.+++.+-+|-.+. .
T Consensus 251 ~lv~~Lv~Lmd---~~s~kvkcqA~lALrnla-s---dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp 323 (550)
T KOG4224|consen 251 KLVPALVDLMD---DGSDKVKCQAGLALRNLA-S---DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP 323 (550)
T ss_pred chHHHHHHHHh---CCChHHHHHHHHHHhhhc-c---cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc
Confidence 22333443333 456666665422222210 1 22222222 345666777766667778888884443 1
Q ss_pred CChHhHh--hHHHHHHHHhcCCCch-hHHHHHHhhccCcCCCCchhhHHHHHHHHhccC--CcchHHHHH-----HHHHH
Q 003409 284 VTNRELT--PAITVLQLFLSSSKPV-LRFAAVRTLNKSLISDQNRSIATLAITTLLKTG--NESSVDRLM-----KQITN 353 (822)
Q Consensus 284 ~~~~~~~--~a~~~L~~~l~s~~~n-~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~--ne~Nv~~Iv-----~eL~~ 353 (822)
....++. ....+|.++|...|++ ++..|..++ -.++ .+.|+..|. ..+.+
T Consensus 324 lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstL--------------------rnLAasse~n~~~i~esgAi~kl~e 383 (550)
T KOG4224|consen 324 LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTL--------------------RNLAASSEHNVSVIRESGAIPKLIE 383 (550)
T ss_pred CcccceecccchhHHHHHHhcCCchhhhhhHHHHH--------------------HHHhhhhhhhhHHHhhcCchHHHHH
Confidence 1112222 2345788888877665 555554443 2222 233444332 33444
Q ss_pred hhhhcCHHHHHHHHHHHHHHHH
Q 003409 354 FMSDIADEFKIVVVEAIRSLCL 375 (822)
Q Consensus 354 y~~~~~~~~k~~~v~aI~~la~ 375 (822)
.+.+.+-+|+.++--.|+.|+.
T Consensus 384 L~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 384 LLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred HHhcCChhHHHHHHHHHHHHHh
Confidence 4455566666666666666664
No 51
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.18 Score=57.62 Aligned_cols=274 Identities=12% Similarity=0.149 Sum_probs=151.3
Q ss_pred HHHHHHHHhcCCC--CCccchhhhhhhhhhhcc-cCCccchhHHHHHHHHhCCCC-cchhh-----hhhhHHhhcCCCCH
Q 003409 50 ITKLLYLLNQGET--FTKIEATEVFFAVTKLFQ-SRDIGLRRMVYLMIKELSPSA-DEVII-----VTSSLMKDMTSKTD 120 (822)
Q Consensus 50 l~kli~~~~~G~~--f~~~e~s~lf~~v~kl~~-s~d~~lKrl~YL~l~~~~~~~-~~~lL-----viNsl~kDl~~~n~ 120 (822)
..++--+.+.+.+ ..++..+.+.+..++.+. ..+..++--.=-+++.++--+ +..-. ++--|.+=+.|+++
T Consensus 87 ~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~ 166 (514)
T KOG0166|consen 87 TQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA 166 (514)
T ss_pred HHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH
Confidence 5555555555543 222233344455555665 444666666666676766532 22211 22236777899999
Q ss_pred HHHHHHHHHhcCCCchh-hHHH------HHHHHHHhhcCCCH-HHHHHHHHHHHhhcccC-h----hHHHHHHHHHHHHh
Q 003409 121 MYRANAIRVLCRITDGT-LLTQ------IERYLKQAIVDKNP-VVASAALVSGIHLLQTT-P----EIVKRWSNEVQEAV 187 (822)
Q Consensus 121 ~vr~lALr~l~~I~~~~-~~~~------l~~~v~~~l~d~~p-~VRk~A~la~~~l~~~~-p----e~v~~~~~~l~~ll 187 (822)
.++.-|.=+|+||.... .+++ ++.++...+....+ ...|.|.-++-.+++.. | +.+...++.+..++
T Consensus 167 ~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll 246 (514)
T KOG0166|consen 167 DVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL 246 (514)
T ss_pred HHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999985433 4444 45566677766665 67788889999988743 3 66788999999999
Q ss_pred cCCChhHHHHHHHHHHHHHhcChHHH---------HHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCc-----h
Q 003409 188 QSRAALVQFHALALLHQIRQNDRLAV---------SKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGD-----R 253 (822)
Q Consensus 188 ~d~~~~V~~~al~lL~~i~~~d~~~i---------~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~-----~ 253 (822)
.+.|+.|+..|.-++-.+.......+ .+|+.-+. .+++=.+.=-||.+...... +.... .
T Consensus 247 ~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~---~~~~~v~~PaLRaiGNIvtG---~d~QTq~vi~~ 320 (514)
T KOG0166|consen 247 HSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG---HSSPKVVTPALRAIGNIVTG---SDEQTQVVINS 320 (514)
T ss_pred hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHc---CCCcccccHHHhhccceeec---cHHHHHHHHhc
Confidence 99999999777665555443322111 12222222 11222222334444332111 11111 1
Q ss_pred hhHHHHHHHhc-cCChhhHHHHHHHHhhccCCChHhHhhHHH--HHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHH
Q 003409 254 PFYDFLESCLR-HKAEMVIFEAARAITELNGVTNRELTPAIT--VLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATL 330 (822)
Q Consensus 254 ~l~~~l~~~L~-~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~--~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~ 330 (822)
..++.|..++. +..+.+.-||+.+|.++.......+..++. ++-.++ .++...+-.+|+.
T Consensus 321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li-----------------~~l~~~ef~~rKE 383 (514)
T KOG0166|consen 321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLI-----------------NLLQTAEFDIRKE 383 (514)
T ss_pred ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHH-----------------HHHhccchHHHHH
Confidence 23445555555 334456666666666665322222222111 111110 3445556778887
Q ss_pred HHHHHhccCCcchHHH
Q 003409 331 AITTLLKTGNESSVDR 346 (822)
Q Consensus 331 aL~lL~~l~ne~Nv~~ 346 (822)
|.-.+..++...+-+.
T Consensus 384 AawaIsN~ts~g~~~q 399 (514)
T KOG0166|consen 384 AAWAISNLTSSGTPEQ 399 (514)
T ss_pred HHHHHHhhcccCCHHH
Confidence 7777777776666444
No 52
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.96 E-value=0.4 Score=60.24 Aligned_cols=128 Identities=13% Similarity=0.201 Sum_probs=96.9
Q ss_pred CccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchh--h--HHHHHHHHHHhhcCCCHHHH
Q 003409 83 DIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGT--L--LTQIERYLKQAIVDKNPVVA 158 (822)
Q Consensus 83 d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~--~--~~~l~~~v~~~l~d~~p~VR 158 (822)
++.--++.|.|+....+-....--..+-|.--+..+-.-+|.-|||+|+.|...+ + -+.+-..|..-+.|++..||
T Consensus 793 d~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVR 872 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVR 872 (1692)
T ss_pred cchhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHH
Confidence 4445577788874444333222222345555567788899999999999986433 2 23466777888899999999
Q ss_pred HHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcCh
Q 003409 159 SAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDR 210 (822)
Q Consensus 159 k~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~ 210 (822)
-+|+-=+-|..-.+||.+.++-..+.+-+.|...+|--+++-.+.+||...|
T Consensus 873 EAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 873 EAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 9999988888888999999999988888888888899999999999887654
No 53
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.90 E-value=0.4 Score=56.06 Aligned_cols=241 Identities=14% Similarity=0.175 Sum_probs=120.4
Q ss_pred hhhhHHHHHhhhcCCCCChHHhHHHHHHHHHHHhc--CCCCCccchhhhhhhhhh---------hcccCCccchhHHHHH
Q 003409 25 EKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQ--GETFTKIEATEVFFAVTK---------LFQSRDIGLRRMVYLM 93 (822)
Q Consensus 25 ~k~~~lqE~r~f~~~~~~~~k~~~~l~kli~~~~~--G~~f~~~e~s~lf~~v~k---------l~~s~d~~lKrl~YL~ 93 (822)
.+...+-=+|.|..+. . ..++++.|++-...- |. +..++.++++- -++.....-|+++|.+
T Consensus 634 Trevmlil~rEf~sPD-e--emkkivLKVv~qcc~t~Gv-----~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~tt 705 (1172)
T KOG0213|consen 634 TREVMLILIREFGSPD-E--EMKKIVLKVVKQCCATDGV-----EPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTT 705 (1172)
T ss_pred HHHHHHHHHHhhCCCh-H--HHHHHHHHHHHHHhcccCC-----CHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHH
Confidence 3333334467888652 2 223346666655442 43 33333333322 3455666679999999
Q ss_pred HHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhc----CCCch----hhHHHHHHHHHHhhcCCCHHHH------H
Q 003409 94 IKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLC----RITDG----TLLTQIERYLKQAIVDKNPVVA------S 159 (822)
Q Consensus 94 l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~----~I~~~----~~~~~l~~~v~~~l~d~~p~VR------k 159 (822)
. +++..-. .-=.++-+..|+.|.+|.+|-++..++. +++.. .+-+.++..|.-++.+...-+. -
T Consensus 706 v-~ia~KvG-~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg 783 (1172)
T KOG0213|consen 706 V-EIAAKVG-SDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFG 783 (1172)
T ss_pred H-HHHHHhC-chHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHH
Confidence 8 6664310 1124577788999999988877665554 44433 3455566666666665433222 1
Q ss_pred HHHHHHH-hhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhc-----ChHHHHH----HHHHhcCCCCCChh
Q 003409 160 AALVSGI-HLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQN-----DRLAVSK----LVTSLTRGTVRSPL 229 (822)
Q Consensus 160 ~A~la~~-~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~-----d~~~i~~----Li~~l~~~~~~~~w 229 (822)
..+.++. |+-+--|.++.. +...|+.+.+.|-.+|.-++-.+..- ...-..+ |...+. .--|=
T Consensus 784 ~V~~~lg~r~kpylpqi~st----iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylg---eeypE 856 (1172)
T KOG0213|consen 784 TVVNALGGRVKPYLPQICST----ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLG---EEYPE 856 (1172)
T ss_pred HHHHHHhhccccchHHHHHH----HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcC---cccHH
Confidence 1111222 222223444433 33345566666666665444433221 0011111 111111 11122
Q ss_pred HHHHHHHHHH---hhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccC
Q 003409 230 AQCLLIRYTT---QVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNG 283 (822)
Q Consensus 230 ~~v~llr~l~---~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~ 283 (822)
..=.+|..++ ....-....| -...++..|.++|++...-|.-.|+.++-.+.+
T Consensus 857 vLgsILgAikaI~nvigm~km~p-Pi~dllPrltPILknrheKVqen~IdLvg~Iad 912 (1172)
T KOG0213|consen 857 VLGSILGAIKAIVNVIGMTKMTP-PIKDLLPRLTPILKNRHEKVQENCIDLVGTIAD 912 (1172)
T ss_pred HHHHHHHHHHHHHHhccccccCC-ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHh
Confidence 2222222222 2110000012 135677888999999888888888888877753
No 54
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.89 E-value=0.14 Score=57.86 Aligned_cols=245 Identities=16% Similarity=0.107 Sum_probs=141.3
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHhh-cCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHH
Q 003409 120 DMYRANAIRVLCRITDGTLLTQIERYLKQAI-VDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHA 198 (822)
Q Consensus 120 ~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l-~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~a 198 (822)
+-.++- |..|.-++ +. ..+.+...+ .+.++-|+..|++++... ..|.. +..+.+.+.|.++.|...+
T Consensus 39 eRL~Ah-LdgL~~~G-~~----a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~~----~~~L~~~L~d~~~~vr~aa 106 (410)
T TIGR02270 39 ERLLAH-VDGLVLAG-KA----ATELLVSALAEADEPGRVACAALALLAQ--EDALD----LRSVLAVLQAGPEGLCAGI 106 (410)
T ss_pred HHHHHH-HHHHHHhh-Hh----HHHHHHHHHhhCCChhHHHHHHHHHhcc--CChHH----HHHHHHHhcCCCHHHHHHH
Confidence 333333 55555444 33 333444444 366777777776666543 22332 4444556667777777777
Q ss_pred HHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHH
Q 003409 199 LALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAI 278 (822)
Q Consensus 199 l~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i 278 (822)
...|-++... .+...|+.-+. ...|+..--.+..+... . . .-.+.+.+.|++.++.|.-+|++++
T Consensus 107 a~ALg~i~~~--~a~~~L~~~L~---~~~p~vR~aal~al~~r--~----~----~~~~~L~~~L~d~d~~Vra~A~raL 171 (410)
T TIGR02270 107 QAALGWLGGR--QAEPWLEPLLA---ASEPPGRAIGLAALGAH--R----H----DPGPALEAALTHEDALVRAAALRAL 171 (410)
T ss_pred HHHHhcCCch--HHHHHHHHHhc---CCChHHHHHHHHHHHhh--c----c----ChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6666655543 45555555554 45666665555555431 1 1 1146777788889999999999999
Q ss_pred hhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc-----------CcCCCCchhhHHHHHHHHhccCCcchHHHH
Q 003409 279 TELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK-----------SLISDQNRSIATLAITTLLKTGNESSVDRL 347 (822)
Q Consensus 279 ~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~-----------~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~I 347 (822)
-.+... .+...|...+.+.++.+|..|+..+.. .+..+++...+.....++-...++ ++
T Consensus 172 G~l~~~------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~----~a 241 (410)
T TIGR02270 172 GELPRR------LSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGP----DA 241 (410)
T ss_pred Hhhccc------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCch----hH
Confidence 888632 233446666888888899888877654 223444444443333333222333 55
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Q 003409 348 MKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILI 412 (822)
Q Consensus 348 v~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv 412 (822)
+.-|...+.+ ...+..++.++|.+..- ..+..|+..+.+. + +...+-+.+..|.
T Consensus 242 ~~~L~~ll~d--~~vr~~a~~AlG~lg~p------~av~~L~~~l~d~--~-~aR~A~eA~~~It 295 (410)
T TIGR02270 242 QAWLRELLQA--AATRREALRAVGLVGDV------EAAPWCLEAMREP--P-WARLAGEAFSLIT 295 (410)
T ss_pred HHHHHHHhcC--hhhHHHHHHHHHHcCCc------chHHHHHHHhcCc--H-HHHHHHHHHHHhh
Confidence 5666666554 33788888888876532 3455666666542 2 5555555555443
No 55
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.27 Score=57.76 Aligned_cols=429 Identities=12% Similarity=0.116 Sum_probs=216.6
Q ss_pred ChHHhHHHHHHHHHHHhcCCCCCccchhh-hhhhhhhhcccCCccchhHHHHHHHHhCCCC-c-----------------
Q 003409 42 DPRRCSQVITKLLYLLNQGETFTKIEATE-VFFAVTKLFQSRDIGLRRMVYLMIKELSPSA-D----------------- 102 (822)
Q Consensus 42 ~~~k~~~~l~kli~~~~~G~~f~~~e~s~-lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~-~----------------- 102 (822)
+.+-+.+++.-+..+|++-|+|=.--|-. +|.--++-|-|++-+++-.+--||+..+++. |
T Consensus 230 d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~ 309 (859)
T KOG1241|consen 230 DEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSS 309 (859)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchh
Confidence 34444555766666776665433323443 5555566788999999999999998666521 1
Q ss_pred ----------chhhhhhhHHh-----hcCCCCHH-HHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 003409 103 ----------EVIIVTSSLMK-----DMTSKTDM-YRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGI 166 (822)
Q Consensus 103 ----------~~lLviNsl~k-----Dl~~~n~~-vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~ 166 (822)
.+-...+.|.| |-.+=||. --|.-|-.++.....+|.+.+.+.|++.+.+++.-=|-.|+++..
T Consensus 310 ~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFG 389 (859)
T KOG1241|consen 310 KYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFG 389 (859)
T ss_pred hHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHH
Confidence 12344577777 33334553 335558888888999999999999999999999999999999987
Q ss_pred hhcc-cChh----HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHH------H----HHHHhc---CCCCCCh
Q 003409 167 HLLQ-TTPE----IVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS------K----LVTSLT---RGTVRSP 228 (822)
Q Consensus 167 ~l~~-~~pe----~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~------~----Li~~l~---~~~~~~~ 228 (822)
.+.. ..|+ ++...++.+..+++|+.-.|--.+-..|..|...-+.++. . ++..+. +-....-
T Consensus 390 SIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~C 469 (859)
T KOG1241|consen 390 SILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVC 469 (859)
T ss_pred hhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHH
Confidence 6543 2222 2335666666777776554443344445555544332211 1 111121 0012234
Q ss_pred hHHHHHHHHHHhhhhcc-cCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchh
Q 003409 229 LAQCLLIRYTTQVIREA-ATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVL 307 (822)
Q Consensus 229 w~~v~llr~l~~~~~~~-~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ 307 (822)
|+...|-.-+..-.+.. ..+|.. ..+..++..+|.-++. .+.+...++..|...|..++..
T Consensus 470 WAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr------------~dgnqsNLR~AAYeALmElIk~----- 531 (859)
T KOG1241|consen 470 WAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDR------------ADGNQSNLRSAAYEALMELIKN----- 531 (859)
T ss_pred HHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccc------------cccchhhHHHHHHHHHHHHHHc-----
Confidence 66555544333221110 000111 1122222333321100 0001112222222222222221
Q ss_pred HHHHHHhhccCcCCCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcC-HHHHHHHHHHHHHHHH----hCcccHH
Q 003409 308 RFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIA-DEFKIVVVEAIRSLCL----KFPLKYR 382 (822)
Q Consensus 308 ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~-~~~k~~~v~aI~~la~----k~~~~~~ 382 (822)
+=+|-...+.+..+-++-++ ...+. .+++.+..... .+....+...++.+-. ++++..+
T Consensus 532 -----------st~~vy~~v~~~~l~il~kl--~q~i~---~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d 595 (859)
T KOG1241|consen 532 -----------STDDVYPMVQKLTLVILEKL--DQTIS---SQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD 595 (859)
T ss_pred -----------CcHHHHHHHHHHHHHHHHHH--HHHHH---HHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH
Confidence 11111122222222222222 11111 12222211000 1122223333333333 5555666
Q ss_pred HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHH----HHHhhcCCchhHHHhhheecCCCCCCCC-ChH
Q 003409 383 SLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHL----CEFIEDCEFTYLSTQILHFLGTEGPKTS-DPS 457 (822)
Q Consensus 383 ~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L----~~~l~~~~~~~~~~~i~wiLGEy~~~~~-~~~ 457 (822)
.++..+++++...++-.+.+++.-.+-.++..--.-...-.... ..-+..+....+..+++-++|.-+.... +..
T Consensus 596 ~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~ 675 (859)
T KOG1241|consen 596 QIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDIL 675 (859)
T ss_pred HHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 67777777777633333667776666666654333233333333 3334456666778888888888765432 222
Q ss_pred HHHHHHHhhc----cCC--CHHHHHHHHHHHHHHhhccc-c---chHHHHHHHHHHh
Q 003409 458 KYIRYIYNRV----HLE--NATVRAAAVSTLAKFGAMVD-A---LKPRVFVLLRRCL 504 (822)
Q Consensus 458 ~~i~~i~~~~----~~e--~~~vr~~~ltal~K~~~~~~-~---~~~~i~~ll~~~~ 504 (822)
-|...+.+.+ ..+ +..||.+++++++-++...+ + --+.|..+|+...
T Consensus 676 py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 676 PYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred hHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 2333333332 222 45788999999998887543 2 3457888888776
No 56
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.84 E-value=1.5 Score=52.87 Aligned_cols=306 Identities=16% Similarity=0.156 Sum_probs=165.0
Q ss_pred cchhhhhhhHHhhcC--CCCHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHH
Q 003409 102 DEVIIVTSSLMKDMT--SKTDMYRANAIRVLCRITD---GTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIV 176 (822)
Q Consensus 102 ~~~lLviNsl~kDl~--~~n~~vr~lALr~l~~I~~---~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v 176 (822)
+..-=++-.+.+|+. ..|.-+|-+|+=.++-++- ..-.+.+..-+.+++.+++.-|+++|+.|+-.+--.+ .
T Consensus 813 ~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn---l 889 (1233)
T KOG1824|consen 813 QKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN---L 889 (1233)
T ss_pred ccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc---h
Confidence 445555567888888 4577899999999988763 3345556778899999999999999999998886522 2
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhc---C--hHHHHHHHHHhc------CCCCCChhHHHHHHHHHHhhhhcc
Q 003409 177 KRWSNEVQEAVQSRAALVQFHALALLHQIRQN---D--RLAVSKLVTSLT------RGTVRSPLAQCLLIRYTTQVIREA 245 (822)
Q Consensus 177 ~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~---d--~~~i~~Li~~l~------~~~~~~~w~~v~llr~l~~~~~~~ 245 (822)
.++++.+.+.... +|--+|--+..|.++-.. | ...+.++-..+. ..+.++=.+ ..++++.--
T Consensus 890 ~~yLpfil~qi~s-qpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvA-----ECLGkL~l~- 962 (1233)
T KOG1824|consen 890 PKYLPFILEQIES-QPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVA-----ECLGKLVLI- 962 (1233)
T ss_pred HhHHHHHHHHHhc-chHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHH-----HHhhhHHhC-
Confidence 2333333333322 333333333223332211 1 111222221111 000111111 122222111
Q ss_pred cCCCCCchhhHHHHHHHhccCChh---hHHHHHHHHhhccCCCh---HhHhhHHHHHHHHhcCCCchhHHHHHHhhcc--
Q 003409 246 ATTQTGDRPFYDFLESCLRHKAEM---VIFEAARAITELNGVTN---RELTPAITVLQLFLSSSKPVLRFAAVRTLNK-- 317 (822)
Q Consensus 246 ~~d~~~~~~l~~~l~~~L~~~~~a---V~~ea~~~i~~l~~~~~---~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~-- 317 (822)
+| +.++..|+..+++..+. .+..|+|.-+... ++ .++.+.+.-.-.++..+|.++|-+||..++.
T Consensus 963 --ep---esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~--p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaa 1035 (1233)
T KOG1824|consen 963 --EP---ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQ--PQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAA 1035 (1233)
T ss_pred --Ch---HHHHHHHHHHhcCCCcchhhhhhheeeeeecCC--CCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 33 35677777777765443 4444444443332 22 2334444444445577888888888877653
Q ss_pred --------------------------CcC-----------CCCchhhHHHHHHHHhccCCcchHHHHH--HHHHHhhh-h
Q 003409 318 --------------------------SLI-----------SDQNRSIATLAITTLLKTGNESSVDRLM--KQITNFMS-D 357 (822)
Q Consensus 318 --------------------------~lL-----------~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv--~eL~~y~~-~ 357 (822)
.++ =|.-..+|+.|.+.+|.+.+ .....+ .+++.++. -
T Consensus 1036 hNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLd--scld~~dit~Fl~~~~~G 1113 (1233)
T KOG1824|consen 1036 HNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLD--SCLDRLDITEFLNHVEDG 1113 (1233)
T ss_pred ccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHH--hhhhhccHHHHHHHHHhh
Confidence 111 24446788888888887632 111111 23333332 1
Q ss_pred cC--HHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Q 003409 358 IA--DEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEF 429 (822)
Q Consensus 358 ~~--~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~ 429 (822)
.. .++|--...-+.++|..-|...-.-+|.+++-|+.--.+.++. ..+++=..++.|++..+++.+...
T Consensus 1114 L~DhydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~---~svKqE~ek~~eLkRSAlRav~~L 1184 (1233)
T KOG1824|consen 1114 LEDHYDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKA---NSVKQEFEKQDELKRSALRAVAAL 1184 (1233)
T ss_pred cchhhHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhccccc---chHhHhHHHHHHHHHHHHHHHHHH
Confidence 22 3344444455577777778777777888887777533332322 233344455566666666666554
No 57
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.97 Score=52.52 Aligned_cols=308 Identities=14% Similarity=0.125 Sum_probs=185.5
Q ss_pred cccCCccchhHHHHHHHHhCC-----CC-cchhhhhhhHHhhcCCCCHHHHH---HHHHHhcCCCchhhHHHHHHHHHHh
Q 003409 79 FQSRDIGLRRMVYLMIKELSP-----SA-DEVIIVTSSLMKDMTSKTDMYRA---NAIRVLCRITDGTLLTQIERYLKQA 149 (822)
Q Consensus 79 ~~s~d~~lKrl~YL~l~~~~~-----~~-~~~lLviNsl~kDl~~~n~~vr~---lALr~l~~I~~~~~~~~l~~~v~~~ 149 (822)
..+.|...|.+.=|.+++-.. .. +..--+-+.+.+-+-++++.+|+ .-++++.+......-+.+.+.+-++
T Consensus 57 ~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~ 136 (885)
T KOG2023|consen 57 AKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCEL 136 (885)
T ss_pred ccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHH
Confidence 456777778888787775543 12 33556668888899999999985 4578888888878889999999999
Q ss_pred hcCCCHHHHHHHHHHHHhhcccChhHHHH---------HHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHH----HHHH
Q 003409 150 IVDKNPVVASAALVSGIHLLQTTPEIVKR---------WSNEVQEAVQSRAALVQFHALALLHQIRQNDRLA----VSKL 216 (822)
Q Consensus 150 l~d~~p~VRk~A~la~~~l~~~~pe~v~~---------~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~----i~~L 216 (822)
|...+...---|.-|+-|++.++++..+. ++++.-......+|....+|+.-++..-.....+ +.+.
T Consensus 137 L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~F 216 (885)
T KOG2023|consen 137 LDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKF 216 (885)
T ss_pred hcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHH
Confidence 99888778888888999999999887752 5555666666778888888887776644332232 3344
Q ss_pred HHHhc-CCCCCChhHHHHHHHHHHhhhhc--ccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCC--hHhH--
Q 003409 217 VTSLT-RGTVRSPLAQCLLIRYTTQVIRE--AATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVT--NREL-- 289 (822)
Q Consensus 217 i~~l~-~~~~~~~w~~v~llr~l~~~~~~--~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~--~~~~-- 289 (822)
+..+- .....+|-..-.+-|-+..++.- +..-|. -..++++.....+..+..|.+||+..-+.+...+ ...+
T Consensus 217 le~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph-l~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p 295 (885)
T KOG2023|consen 217 LEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH-LDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQP 295 (885)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc-hHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHH
Confidence 44221 11144555443333332222111 000111 1233444444445567889999999998886432 1222
Q ss_pred --hhHHHHHHHHhcCCCchhHHHHHHh--hc-c-----------------------CcC-------------CCCc----
Q 003409 290 --TPAITVLQLFLSSSKPVLRFAAVRT--LN-K-----------------------SLI-------------SDQN---- 324 (822)
Q Consensus 290 --~~a~~~L~~~l~s~~~n~ry~aL~~--l~-~-----------------------~lL-------------~d~d---- 324 (822)
.+.+.+| ++ ..+|.-... +. . ..- +|.|
T Consensus 296 ~l~kliPvL---l~----~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~d 368 (885)
T KOG2023|consen 296 YLDKLIPVL---LS----GMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSD 368 (885)
T ss_pred HHHHHHHHH---Hc----cCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccccccc
Confidence 2222222 22 112221111 00 0 000 1111
Q ss_pred hhhH---HHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHh---C-cccHHHHHHHHHHHHhh
Q 003409 325 RSIA---TLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLK---F-PLKYRSLMNFLSNILRE 394 (822)
Q Consensus 325 ~sIr---~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k---~-~~~~~~~v~~l~~lL~~ 394 (822)
-.+| ..||++|..+--++=...++.-|.+.+..-+=-.|+..|.++|.+|+- + =+-....+.+++.+|.+
T Consensus 369 WNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~D 445 (885)
T KOG2023|consen 369 WNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDD 445 (885)
T ss_pred ccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhcc
Confidence 1244 578888877766666666666666666543334678888999888872 2 22334678888888876
No 58
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=96.66 E-value=0.0079 Score=55.46 Aligned_cols=101 Identities=15% Similarity=0.251 Sum_probs=64.6
Q ss_pred CchHHHHhhcCCCceeEEEEecCCCCcHHHHHHHHHHhhCCcccCCCccccCCCccceEEEEEEEecCceEEEEEEEeec
Q 003409 714 SNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGID 793 (822)
Q Consensus 714 ~~F~~~W~~~~~~~e~~~~~~l~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ag~~~~~~~vl~~~~~~~~ 793 (822)
++|.++|.+++...+.+-.+.+.....-.+++.+.++.-|...+-... + +.....+++|++..+|.-+|+-+.+ +
T Consensus 10 ~~F~~~W~sl~~~~~~e~~~~~~~~~~~~~~i~~~L~~~nI~~iA~~~-~--~~~~~~~y~s~~~~~~~~fL~El~~--~ 84 (114)
T PF09066_consen 10 EEFQEMWKSLPDSNQQELSIQLNASVPSPDAIEEKLQANNIFTIASGK-V--DNGQKFFYFSAKTTNGIWFLVELTI--D 84 (114)
T ss_dssp HHHHHHHHHS-GGG--EEEEEETT----HHHHHHHHHCTT-EEEEEEE-C--TT-EEEEEEEEEBTTS-EEEEEEEE---
T ss_pred HHHHHHHHhCCcccceEEEEeccccCCcHHHHHHHHHHCCEEEEecCC-C--CccccEEEEEEEcCCCcEEEEEEEE--c
Confidence 479999999975442233444431233466788888988888766432 1 1146688889888777667766655 3
Q ss_pred CCcceEEEEEEecCCcchHHHHHHHHh
Q 003409 794 GPKEVAMKLAVRSEDDNVSDMIHEIVA 820 (822)
Q Consensus 794 ~~~~~~~~~~vRs~~~~v~~~v~~~~~ 820 (822)
.+ +..+++++||++++++..+.+++.
T Consensus 85 ~~-~~~~~v~vK~~~~~~~~~f~~~~~ 110 (114)
T PF09066_consen 85 PG-SPSVKVTVKSENPEMAPLFLQLFE 110 (114)
T ss_dssp TT--SSEEEEEEESSCCCHHHHHHHHH
T ss_pred CC-CccEEEEEecCCHHHHHHHHHHHH
Confidence 43 447999999999999999888764
No 59
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.49 Score=54.79 Aligned_cols=306 Identities=13% Similarity=0.035 Sum_probs=157.0
Q ss_pred hhhhhHHhhcCCCCHHHHHHHHHHhcCCCchh-----hHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHH
Q 003409 106 IVTSSLMKDMTSKTDMYRANAIRVLCRITDGT-----LLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWS 180 (822)
Q Consensus 106 LviNsl~kDl~~~n~~vr~lALr~l~~I~~~~-----~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~ 180 (822)
+..+.=++-.+....-+|-.++.++..++.+. --+.+...+.....|.++-||+.|+-+++.|-. .-.+-+...
T Consensus 158 l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~~Y 236 (823)
T KOG2259|consen 158 LLHGVAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKACY 236 (823)
T ss_pred HHhhhHHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cccccHHHH
Confidence 34443333333334445555555555554322 234455556667788899999999999888765 222223355
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhcCh--------------HHHHHHHHHhcCCCCCChhHH-HHHHHHHHhhhhcc
Q 003409 181 NEVQEAVQSRAALVQFHALALLHQIRQNDR--------------LAVSKLVTSLTRGTVRSPLAQ-CLLIRYTTQVIREA 245 (822)
Q Consensus 181 ~~l~~ll~d~~~~V~~~al~lL~~i~~~d~--------------~~i~~Li~~l~~~~~~~~w~~-v~llr~l~~~~~~~ 245 (822)
+...+++.|.+..|-.+|+.++.-..+.-| .++.++...+. . -.|.. +.--+.+..+
T Consensus 237 ~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~---D-~sl~VRV~AaK~lG~~---- 308 (823)
T KOG2259|consen 237 SRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVR---D-RSLSVRVEAAKALGEF---- 308 (823)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHh---c-CceeeeehHHHHhchH----
Confidence 666677888888888888776654332211 11222222221 0 12432 2222222221
Q ss_pred cCCCCCc-hhhHHHHHHHhcc---------CChh-----------------hHHH-------------HHHHHhh-ccCC
Q 003409 246 ATTQTGD-RPFYDFLESCLRH---------KAEM-----------------VIFE-------------AARAITE-LNGV 284 (822)
Q Consensus 246 ~~d~~~~-~~l~~~l~~~L~~---------~~~a-----------------V~~e-------------a~~~i~~-l~~~ 284 (822)
.+.+ +-+.+.|...+-+ .-+. |=-| |+-++++ +.+.
T Consensus 309 ---~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE 385 (823)
T KOG2259|consen 309 ---EQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE 385 (823)
T ss_pred ---HHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHH
Confidence 1122 2333444433322 0011 1111 1111111 1100
Q ss_pred ChHhHhhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHHHHHHHhccCCcchHH-HHHHHHHHhhhhcCHHHH
Q 003409 285 TNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVD-RLMKQITNFMSDIADEFK 363 (822)
Q Consensus 285 ~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~ne~Nv~-~Iv~eL~~y~~~~~~~~k 363 (822)
--+.+..|+..+..+-.+ .|..--.++.-|- +.++|....+|.+|+..|-.+.+.--++ ..++.+++-+.+.+.+.|
T Consensus 386 f~EVR~AAV~Sl~~La~s-sP~FA~~aldfLv-DMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvR 463 (823)
T KOG2259|consen 386 FYEVRRAAVASLCSLATS-SPGFAVRALDFLV-DMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVR 463 (823)
T ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHH
Confidence 012334455555544332 1221111111110 5678988899999999888775442221 344555555566667776
Q ss_pred HHHHHHHHHHHHhCcc--cHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Q 003409 364 IVVVEAIRSLCLKFPL--KYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEF 429 (822)
Q Consensus 364 ~~~v~aI~~la~k~~~--~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~ 429 (822)
..+-.-++ +.++++ .-..|++.+++.|..- .. =.+++|..|.+|-+|+|..-.....++.+.
T Consensus 464 e~l~elL~--~~~~~d~~~i~m~v~~lL~~L~ky-Pq-Drd~i~~cm~~iGqnH~~lv~s~m~rfl~k 527 (823)
T KOG2259|consen 464 EALRELLK--NARVSDLECIDMCVAHLLKNLGKY-PQ-DRDEILRCMGRIGQNHRRLVLSNMGRFLEK 527 (823)
T ss_pred HHHHHHHH--hcCCCcHHHHHHHHHHHHHHhhhC-CC-CcHHHHHHHHHHhccChhhHHHHHHHHHHh
Confidence 65544332 346665 3456777777777642 11 267889999999999998877777777653
No 60
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.60 E-value=1.1 Score=54.02 Aligned_cols=201 Identities=11% Similarity=0.101 Sum_probs=105.7
Q ss_pred HhhHHHHHHHHhcCC-CchhHHHHHHhhcc------------------CcCCCCchhhHHHHHHHHhccCCcchHHHHHH
Q 003409 289 LTPAITVLQLFLSSS-KPVLRFAAVRTLNK------------------SLISDQNRSIATLAITTLLKTGNESSVDRLMK 349 (822)
Q Consensus 289 ~~~a~~~L~~~l~s~-~~n~ry~aL~~l~~------------------~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~ 349 (822)
...+...++.|.+++ +..+|..|+-++.. ..++.++..+|.-|---|-++ ...|...-++
T Consensus 816 ~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl-~vgnl~~yLp 894 (1233)
T KOG1824|consen 816 KSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSL-AVGNLPKYLP 894 (1233)
T ss_pred hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhh-hcCchHhHHH
Confidence 344555666666532 22255556555543 456777777877665555443 3345555555
Q ss_pred HHHHhhhhcCHHHHHH-HHHHHHHHHHhCcc-cHHHHHHHHHHHHhh--cCCcch-HHHHHHHHHHHHHhCCchHHHHHH
Q 003409 350 QITNFMSDIADEFKIV-VVEAIRSLCLKFPL-KYRSLMNFLSNILRE--EGGFEY-KKAIVDSIVILIRDIPDAKENGLL 424 (822)
Q Consensus 350 eL~~y~~~~~~~~k~~-~v~aI~~la~k~~~-~~~~~v~~l~~lL~~--~g~~~v-~~~iv~~i~~iv~~~p~~~~~~l~ 424 (822)
.+.+-.. ++..|+. +.-+....-.+-.. -...+++-+|.+|.. ++..+. ..-+.+.+-.++-..|+.- +.
T Consensus 895 fil~qi~--sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesL---lp 969 (1233)
T KOG1824|consen 895 FILEQIE--SQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESL---LP 969 (1233)
T ss_pred HHHHHHh--cchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHH---HH
Confidence 5544322 1122222 22333332222111 123445556665543 121112 3334466677777777653 34
Q ss_pred HHHHHhhcCC-chhH--HHhhheecCCCCCCCCCh-HHHHHHHHhhccCCCHHHHHHHHHHHHHHhhccccchHH
Q 003409 425 HLCEFIEDCE-FTYL--STQILHFLGTEGPKTSDP-SKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPR 495 (822)
Q Consensus 425 ~L~~~l~~~~-~~~~--~~~i~wiLGEy~~~~~~~-~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~~~~~~~ 495 (822)
+|-..+.+-. ++.. ..++=|.+.+..+.+..- ..+|...+.-+-.++..||..++.++--.+...|.+-..
T Consensus 970 kL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrD 1044 (1233)
T KOG1824|consen 970 KLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRD 1044 (1233)
T ss_pred HHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHH
Confidence 4443343221 2222 233447787777665432 345666666667789999999999999888877865433
No 61
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.12 Score=59.53 Aligned_cols=251 Identities=14% Similarity=0.104 Sum_probs=155.6
Q ss_pred chhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc--------------
Q 003409 252 DRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK-------------- 317 (822)
Q Consensus 252 ~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~-------------- 317 (822)
.+...+.+..+.......|.-.|+..++.|.+ ..++-..+.+.....++..+..+|-+|++.+.-
T Consensus 196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 34444545555566667788888888877764 334444455556666666666677777665421
Q ss_pred -------------CcCCCCchhhHHHHHHHHhccC--CcchHHHHH-HHHHH----------------------------
Q 003409 318 -------------SLISDQNRSIATLAITTLLKTG--NESSVDRLM-KQITN---------------------------- 353 (822)
Q Consensus 318 -------------~lL~d~d~sIr~~aL~lL~~l~--ne~Nv~~Iv-~eL~~---------------------------- 353 (822)
..++|-..+||-.|-..|-.+. +++=+.+.+ |++..
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ 354 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWN 354 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccc
Confidence 3346666777777766664442 222233322 23332
Q ss_pred -----------------------hhhhcCH---HHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHH
Q 003409 354 -----------------------FMSDIAD---EFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDS 407 (822)
Q Consensus 354 -----------------------y~~~~~~---~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~ 407 (822)
|+.-..+ |.|+.+|.+++.||..-|.-+..++|||.+++.++.. +|.-.++..
T Consensus 355 advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~-~VRL~ai~a 433 (823)
T KOG2259|consen 355 ADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIE-VVRLKAIFA 433 (823)
T ss_pred ccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHH-HHHHHHHHH
Confidence 1122344 4599999999999999999999999999999998654 377777888
Q ss_pred HHHHHHhCCchHHHHHHHHHHHhhcCCchhHHHhhheecCC--CCCCCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Q 003409 408 IVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGT--EGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKF 485 (822)
Q Consensus 408 i~~iv~~~p~~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGE--y~~~~~~~~~~i~~i~~~~~~e~~~vr~~~ltal~K~ 485 (822)
+..|..+ =.+++..+..+++.|+|-. ++++..+--+|+- +.+. .-....+..+...+ .-.|.=|-.++.|+.+|
T Consensus 434 L~~Is~~-l~i~eeql~~il~~L~D~s-~dvRe~l~elL~~~~~~d~-~~i~m~v~~lL~~L-~kyPqDrd~i~~cm~~i 509 (823)
T KOG2259|consen 434 LTMISVH-LAIREEQLRQILESLEDRS-VDVREALRELLKNARVSDL-ECIDMCVAHLLKNL-GKYPQDRDEILRCMGRI 509 (823)
T ss_pred HHHHHHH-heecHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHh-hhCCCCcHHHHHHHHHH
Confidence 8887765 5678888999999998753 4555555555543 2221 01112222332221 11244455788899999
Q ss_pred hhcccc-chHHHHHHHHHHhcCCC
Q 003409 486 GAMVDA-LKPRVFVLLRRCLYDGD 508 (822)
Q Consensus 486 ~~~~~~-~~~~i~~ll~~~~~d~d 508 (822)
+...+. +......++.+...-..
T Consensus 510 GqnH~~lv~s~m~rfl~kh~~f~t 533 (823)
T KOG2259|consen 510 GQNHRRLVLSNMGRFLEKHTSFAT 533 (823)
T ss_pred hccChhhHHHHHHHHHHhcccccc
Confidence 998874 45566677766655433
No 62
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.56 E-value=0.011 Score=61.58 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=103.4
Q ss_pred CCCCChHHhHHHHHHHHHHHhcC--CCCCccchhhhh---hhhhhhcccCCccchhHHHHHHHHhCCC-----Ccchhhh
Q 003409 38 DPQLDPRRCSQVITKLLYLLNQG--ETFTKIEATEVF---FAVTKLFQSRDIGLRRMVYLMIKELSPS-----ADEVIIV 107 (822)
Q Consensus 38 ~~~~~~~k~~~~l~kli~~~~~G--~~f~~~e~s~lf---~~v~kl~~s~d~~lKrl~YL~l~~~~~~-----~~~~lLv 107 (822)
++..+=.++.+.+.+|-.+...| .++...-...+. ..+.+.+.+....+=+-.-..++.++.. .+.+-..
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 33344444455577777777766 222221111122 3555667776666666666666666542 2335667
Q ss_pred hhhHHhhcCCCCHHHHHHHHHHhcCCCchhh-HHHH-HHHHHHhhcCCCHHHHHHHHHHHHhhcccCh---hH------H
Q 003409 108 TSSLMKDMTSKTDMYRANAIRVLCRITDGTL-LTQI-ERYLKQAIVDKNPVVASAALVSGIHLLQTTP---EI------V 176 (822)
Q Consensus 108 iNsl~kDl~~~n~~vr~lALr~l~~I~~~~~-~~~l-~~~v~~~l~d~~p~VRk~A~la~~~l~~~~p---e~------v 176 (822)
.+.|.+=+.+++..+|..|-++|-.|...-- ...+ .+.+..++.|++|-||..++.++..++...| .. +
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 7899999999999999988777776544332 3444 7888889999999999999999998887776 21 3
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhc
Q 003409 177 KRWSNEVQEAVQSRAALVQFHALALLHQIRQN 208 (822)
Q Consensus 177 ~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~ 208 (822)
+.+.+.+..++.|.++.|-.+|-.++..+...
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 46778888899999999988887766665544
No 63
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.54 E-value=0.15 Score=53.92 Aligned_cols=158 Identities=16% Similarity=0.188 Sum_probs=106.1
Q ss_pred CCCHHHHHHHHHHhcCCCchhhHHHHH------HHHHHhhcCCCHHHHHHHHHHHHhhcc--cChhHHHHHHHHHHHHhc
Q 003409 117 SKTDMYRANAIRVLCRITDGTLLTQIE------RYLKQAIVDKNPVVASAALVSGIHLLQ--TTPEIVKRWSNEVQEAVQ 188 (822)
Q Consensus 117 ~~n~~vr~lALr~l~~I~~~~~~~~l~------~~v~~~l~d~~p~VRk~A~la~~~l~~--~~pe~v~~~~~~l~~ll~ 188 (822)
+.+|.++..|+-+|++...-...+.++ +.|.+.+.+++|-||.+|+.|+..+-. .+.+.++..++.+.+.+.
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 568999999999999988777777654 457888999999999999999987754 344566777777766433
Q ss_pred C--CChhHHHHHHHHHHHHHhcCh--H----HHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhH----
Q 003409 189 S--RAALVQFHALALLHQIRQNDR--L----AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFY---- 256 (822)
Q Consensus 189 d--~~~~V~~~al~lL~~i~~~d~--~----~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~---- 256 (822)
+ -|.-++.+++.+|..+.-.+. . .+..++.-+..| +.-.+++.+|.+..+.. +|...+.++
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G---~~~~k~~vLk~L~nLS~----np~~~~~Ll~~q~ 176 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSG---SEKTKVQVLKVLVNLSE----NPDMTRELLSAQV 176 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcC---ChHHHHHHHHHHHHhcc----CHHHHHHHHhccc
Confidence 3 367889999999988754431 1 122333333333 45677888888877532 344333332
Q ss_pred -HHHHHHhcc-CChhhHHHHHHHHhhc
Q 003409 257 -DFLESCLRH-KAEMVIFEAARAITEL 281 (822)
Q Consensus 257 -~~l~~~L~~-~~~aV~~ea~~~i~~l 281 (822)
..+-.+++. .+..+++.++..+-.+
T Consensus 177 ~~~~~~Lf~~~~~~~~l~~~l~~~~ni 203 (254)
T PF04826_consen 177 LSSFLSLFNSSESKENLLRVLTFFENI 203 (254)
T ss_pred hhHHHHHHccCCccHHHHHHHHHHHHH
Confidence 233344444 3567888888887776
No 64
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.24 E-value=0.024 Score=51.78 Aligned_cols=100 Identities=16% Similarity=0.096 Sum_probs=72.8
Q ss_pred hhhhHHhhcCCCCHHHHHHHHHHhcCCCch--h----hHH-HHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH--
Q 003409 107 VTSSLMKDMTSKTDMYRANAIRVLCRITDG--T----LLT-QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-- 177 (822)
Q Consensus 107 viNsl~kDl~~~n~~vr~lALr~l~~I~~~--~----~~~-~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~-- 177 (822)
+++.+.+=|.++|+.+|-.|+.+|+++... + +.+ .+.+.+.+.+.|+++.||+.|+.++.++....|+...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 345555566777888998898888887653 2 333 4677888888899999999999999999877654332
Q ss_pred ---HHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 003409 178 ---RWSNEVQEAVQSRAALVQFHALALLHQIR 206 (822)
Q Consensus 178 ---~~~~~l~~ll~d~~~~V~~~al~lL~~i~ 206 (822)
..++.+..++.+.+..+.-+++.+|..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 25667777777777777777777766553
No 65
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.05 E-value=0.015 Score=70.65 Aligned_cols=147 Identities=17% Similarity=0.153 Sum_probs=108.5
Q ss_pred hhhhhhhhhc----ccCCccchhHHHHHHHHhCCCC----cc-hhhhhhhHHhhcCCCCHHHHHHHHHHhcC--CCchhh
Q 003409 70 EVFFAVTKLF----QSRDIGLRRMVYLMIKELSPSA----DE-VIIVTSSLMKDMTSKTDMYRANAIRVLCR--ITDGTL 138 (822)
Q Consensus 70 ~lf~~v~kl~----~s~d~~lKrl~YL~l~~~~~~~----~~-~lLviNsl~kDl~~~n~~vr~lALr~l~~--I~~~~~ 138 (822)
.+-+-|++++ -.+|+.+..-.||++..+...+ +. +-+.++.+.| +|+|.+|+++.=++|- ++-|.+
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimek---sp~p~IRsN~VvalgDlav~fpnl 995 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEK---SPSPRIRSNLVVALGDLAVRFPNL 995 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc---CCCceeeecchheccchhhhcccc
Confidence 3444556665 3567889999999987665542 22 3333444332 8999999999999997 567889
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHH
Q 003409 139 LTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVT 218 (822)
Q Consensus 139 ~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~ 218 (822)
++...+++.+-+.|.++.|||+|++.+.||+-..-=-|+--+.++.-++.|.++.+---|=..+.|+.... ..+.+|+|
T Consensus 996 ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLP 1074 (1251)
T KOG0414|consen 996 IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLP 1074 (1251)
T ss_pred cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhch
Confidence 99999999999999999999999999999986554445567888888899988777655555677776543 55666666
Q ss_pred Hh
Q 003409 219 SL 220 (822)
Q Consensus 219 ~l 220 (822)
++
T Consensus 1075 di 1076 (1251)
T KOG0414|consen 1075 DI 1076 (1251)
T ss_pred HH
Confidence 54
No 66
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.01 E-value=0.37 Score=50.99 Aligned_cols=135 Identities=15% Similarity=0.130 Sum_probs=91.7
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHhh--cccChhHHHH--HHHHHHHHhcCCChhHHHHHHHHHHHHHhcChH--H----HH
Q 003409 146 LKQAIV-DKNPVVASAALVSGIHL--LQTTPEIVKR--WSNEVQEAVQSRAALVQFHALALLHQIRQNDRL--A----VS 214 (822)
Q Consensus 146 v~~~l~-d~~p~VRk~A~la~~~l--~~~~pe~v~~--~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~--~----i~ 214 (822)
+...|. .++|+++.+|..++... |+.+.+++++ -++.+.+++.++++.|.-.|+.+|..+..+... . +.
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~ 96 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIP 96 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 334444 47899999999988764 4556678875 778888999999999999999998877655321 1 23
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhh---HHHHHHHhccCChhhHHHHHHHHhhccCCC
Q 003409 215 KLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPF---YDFLESCLRHKAEMVIFEAARAITELNGVT 285 (822)
Q Consensus 215 ~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l---~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~ 285 (822)
+++.....+ ..+.-.|+.-+|++..+.- +++....+ +..+.++|.+.+.-+.+.+.++++.++..+
T Consensus 97 ~Vc~~~~s~-~lns~~Q~agLrlL~nLtv----~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 97 QVCEETVSS-PLNSEVQLAGLRLLTNLTV----TNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHHHHhcC-CCCCHHHHHHHHHHHccCC----CcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 333333222 3445677788888887522 22222222 334456777888889999999999997543
No 67
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.98 E-value=2 Score=48.68 Aligned_cols=198 Identities=15% Similarity=0.103 Sum_probs=115.7
Q ss_pred hhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q 003409 107 VTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEA 186 (822)
Q Consensus 107 viNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~l 186 (822)
++..+.+-|.++++-+|.-|.++|+.|+++.....+ ...+.|.+|.||..++ +.+......| . +.+..+
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L----~~~L~~~~p~vR~aal-~al~~r~~~~--~----~~L~~~ 155 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWL----EPLLAASEPPGRAIGL-AALGAHRHDP--G----PALEAA 155 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHH----HHHhcCCChHHHHHHH-HHHHhhccCh--H----HHHHHH
Confidence 467777778888888888888888888877765543 4444677888887666 4433322211 1 123344
Q ss_pred hcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccC
Q 003409 187 VQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHK 266 (822)
Q Consensus 187 l~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~ 266 (822)
+.|.++.|...|+..|-.+... .....|...+.+.
T Consensus 156 L~d~d~~Vra~A~raLG~l~~~---------------------------------------------~a~~~L~~al~d~ 190 (410)
T TIGR02270 156 LTHEDALVRAAALRALGELPRR---------------------------------------------LSESTLRLYLRDS 190 (410)
T ss_pred hcCCCHHHHHHHHHHHHhhccc---------------------------------------------cchHHHHHHHcCC
Confidence 5566777766666555443322 1122233446677
Q ss_pred ChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchh--HHHHHHhhcc---------CcCCCCchhhHHHHHHHH
Q 003409 267 AEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVL--RFAAVRTLNK---------SLISDQNRSIATLAITTL 335 (822)
Q Consensus 267 ~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~--ry~aL~~l~~---------~lL~d~d~sIr~~aL~lL 335 (822)
++.|...|+.....+.. + .+...|..|...+.... +..++..+.. .++.|++ +++-++..|
T Consensus 191 ~~~VR~aA~~al~~lG~-~-----~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~--vr~~a~~Al 262 (410)
T TIGR02270 191 DPEVRFAALEAGLLAGS-R-----LAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRREALRAV 262 (410)
T ss_pred CHHHHHHHHHHHHHcCC-H-----hHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChh--hHHHHHHHH
Confidence 77788888877766642 1 23344444444333332 2222222211 4556654 888899999
Q ss_pred hccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 003409 336 LKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLC 374 (822)
Q Consensus 336 ~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la 374 (822)
-.+++..-+..++..+. ++.+++.+-.++..+.
T Consensus 263 G~lg~p~av~~L~~~l~------d~~~aR~A~eA~~~It 295 (410)
T TIGR02270 263 GLVGDVEAAPWCLEAMR------EPPWARLAGEAFSLIT 295 (410)
T ss_pred HHcCCcchHHHHHHHhc------CcHHHHHHHHHHHHhh
Confidence 99999988887777654 2225555555555444
No 68
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.73 E-value=0.064 Score=53.64 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhc
Q 003409 154 NPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQN 208 (822)
Q Consensus 154 ~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~ 208 (822)
+|.||..|+.++..|+..+|.+++.|++.+..+|.|.++.|-.+|+..|.++-.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~ 55 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE 55 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence 5889999999999999999999999999999999999999999998887776554
No 69
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.53 E-value=1.5 Score=51.21 Aligned_cols=122 Identities=10% Similarity=0.078 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHhcCC--CchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHH
Q 003409 119 TDMYRANAIRVLCRI--TDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQF 196 (822)
Q Consensus 119 n~~vr~lALr~l~~I--~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~ 196 (822)
++-.+-||=.++++. .-|++.+..+..+..++.|.+.-||+.|+-++..+++.+||.+.+....+..+|...++....
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~ 114 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELD 114 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHH
Confidence 455555665665553 458888899999999999999999999999999999999999999999999999887765544
Q ss_pred HHHHHHHHHHhcChHH-HHHHHHHhcCCCCCChhHHHHHHHHHHh
Q 003409 197 HALALLHQIRQNDRLA-VSKLVTSLTRGTVRSPLAQCLLIRYTTQ 240 (822)
Q Consensus 197 ~al~lL~~i~~~d~~~-i~~Li~~l~~~~~~~~w~~v~llr~l~~ 240 (822)
.+=..|..+-..|+.+ +.-|..++.......+-.--++|++++.
T Consensus 115 ~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 115 AVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 4444555555566554 3344444320001123334456666643
No 70
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.49 E-value=2.1 Score=49.57 Aligned_cols=229 Identities=17% Similarity=0.164 Sum_probs=138.2
Q ss_pred HHHHHHHhhcCCCHHHHH-HHHHHHHhhc----c-cChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh-cChHHHH
Q 003409 142 IERYLKQAIVDKNPVVAS-AALVSGIHLL----Q-TTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQ-NDRLAVS 214 (822)
Q Consensus 142 l~~~v~~~l~d~~p~VRk-~A~la~~~l~----~-~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~-~d~~~i~ 214 (822)
++..+.+++.|++++-|+ .|.+|....+ + .-|-++ .+++.+-+...|..+-|.-.|....-.+.. -++.++.
T Consensus 175 ~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv-~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK 253 (569)
T KOG1242|consen 175 FLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV-PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK 253 (569)
T ss_pred HHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH-hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh
Confidence 566677888888887777 4555543322 1 223333 477777777777777666555444333322 2234444
Q ss_pred HHHH----HhcCCCCCChhHHHHHHHHHHhhhhcccCCCCC----chhhHHHHHHHhccCChhhHHHHHHHHhhccCC-C
Q 003409 215 KLVT----SLTRGTVRSPLAQCLLIRYTTQVIREAATTQTG----DRPFYDFLESCLRHKAEMVIFEAARAITELNGV-T 285 (822)
Q Consensus 215 ~Li~----~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~----~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~-~ 285 (822)
.+++ .+....+.+.-+-+.++..+.... |.. ...++..+...|.++.+.|.=.+..++..+.+. .
T Consensus 254 ~llpsll~~l~~~kWrtK~aslellg~m~~~a------p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid 327 (569)
T KOG1242|consen 254 LLLPSLLGSLLEAKWRTKMASLELLGAMADCA------PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID 327 (569)
T ss_pred HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc------hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc
Confidence 4444 332112445667777887666532 222 234677778888888999998888888877532 2
Q ss_pred hHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc--------------------CcCCCCchhhHHHHHHHH---hccC-Cc
Q 003409 286 NRELTPAITVLQLFLSSSKPVLRFAAVRTLNK--------------------SLISDQNRSIATLAITTL---LKTG-NE 341 (822)
Q Consensus 286 ~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~--------------------~lL~d~d~sIr~~aL~lL---~~l~-ne 341 (822)
..++.+.+..|.--++.+.. ---.+++.+.+ +-+.+.+.+++|.+..+. .+++ ++
T Consensus 328 N~dI~~~ip~Lld~l~dp~~-~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp 406 (569)
T KOG1242|consen 328 NPDIQKIIPTLLDALADPSC-YTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDP 406 (569)
T ss_pred cHHHHHHHHHHHHHhcCccc-chHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCH
Confidence 34566666666666654431 22334555544 344677778888776665 4444 45
Q ss_pred chHHHHHHH----HHHhhhhcCHHHHHHHHHHHHHHHHhCc
Q 003409 342 SSVDRLMKQ----ITNFMSDIADEFKIVVVEAIRSLCLKFP 378 (822)
Q Consensus 342 ~Nv~~Iv~e----L~~y~~~~~~~~k~~~v~aI~~la~k~~ 378 (822)
..+...+.+ |..-+.+..+|.|..+.++++.+-++-.
T Consensus 407 ~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 407 KDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLG 447 (569)
T ss_pred HHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 555555544 4444556788999999999988876543
No 71
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.42 E-value=0.025 Score=58.82 Aligned_cols=121 Identities=20% Similarity=0.185 Sum_probs=84.0
Q ss_pred CCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCCCc-chhhhhhhHHhhcCCCCHHHHHHHHHHhcCC----C
Q 003409 60 GETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSAD-EVIIVTSSLMKDMTSKTDMYRANAIRVLCRI----T 134 (822)
Q Consensus 60 G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~-~~lLviNsl~kDl~~~n~~vr~lALr~l~~I----~ 134 (822)
|..|.. .+..+++.+.+.+.+++-.++.-+.-.+..+....+ ..-+....+..-++|+|+.+|..++..+..+ .
T Consensus 85 ~~~~~~-~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 85 GSHFEP-YADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp GGGGHH-HHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred hHhHHH-HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 444654 356788888899999888899999988888877654 3344567777788999999999998877654 2
Q ss_pred -------chhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHH
Q 003409 135 -------DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSN 181 (822)
Q Consensus 135 -------~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~ 181 (822)
.....+.+.+.+.+++.|.+|-||+.|--++..+++..|+-.+.++.
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~ 217 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILS 217 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-----
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchh
Confidence 11235779999999999999999999999999998888887765554
No 72
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=95.31 E-value=3.7 Score=44.23 Aligned_cols=211 Identities=15% Similarity=0.123 Sum_probs=133.0
Q ss_pred hHHhhcCCCCHHHHHHHHHHhcCCCc-hhhHHH------HHHHHHHhhcCCCH--HHHHHHHHHHHhhcc-cCh----hH
Q 003409 110 SLMKDMTSKTDMYRANAIRVLCRITD-GTLLTQ------IERYLKQAIVDKNP--VVASAALVSGIHLLQ-TTP----EI 175 (822)
Q Consensus 110 sl~kDl~~~n~~vr~lALr~l~~I~~-~~~~~~------l~~~v~~~l~d~~p--~VRk~A~la~~~l~~-~~p----e~ 175 (822)
-|..=|.+++..+|--|.-+|+||.+ .+++++ ...++...+.++.+ ..-|+|--.+-.|++ ++| ..
T Consensus 161 lfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~ 240 (526)
T COG5064 161 LFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSN 240 (526)
T ss_pred HHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHH
Confidence 34555788999999999999999964 445554 33455556655444 455677777888887 454 35
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHH---------HHHHHHhcCCCCCChhHHHHHHHHHHhhhhccc
Q 003409 176 VKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAV---------SKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAA 246 (822)
Q Consensus 176 v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i---------~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~ 246 (822)
+.+-++.+.+++..+|+-|+..|.=++.-+..-....+ .+|+.-++ .++--.|.-.||.+......+
T Consensus 241 isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs---~~sa~iqtPalR~vGNIVTG~- 316 (526)
T COG5064 241 ISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS---HESAKIQTPALRSVGNIVTGS- 316 (526)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhc---CccccccCHHHHhhcCeeecC-
Confidence 77888999999999999888777654444432211111 23555444 233334555678777654331
Q ss_pred CCCCCc----hhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhh-----HHHHHHHHhcCCCchhHHHHHHhhc-
Q 003409 247 TTQTGD----RPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTP-----AITVLQLFLSSSKPVLRFAAVRTLN- 316 (822)
Q Consensus 247 ~d~~~~----~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~-----a~~~L~~~l~s~~~n~ry~aL~~l~- 316 (822)
|.+.. --.+.++.++|.|.-..+.-||+.+|.+++....+.+.. .+.+|..+|++.+--+|=.|.=.++
T Consensus 317 -D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisN 395 (526)
T COG5064 317 -DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISN 395 (526)
T ss_pred -ccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22211 124578888899988899999999999997433333332 2346777777766555544433333
Q ss_pred --cCcCCCCch
Q 003409 317 --KSLISDQNR 325 (822)
Q Consensus 317 --~~lL~d~d~ 325 (822)
..++.-||.
T Consensus 396 atsgg~~~PD~ 406 (526)
T COG5064 396 ATSGGLNRPDI 406 (526)
T ss_pred hhccccCCchH
Confidence 266666664
No 73
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.12 E-value=8.3 Score=48.07 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=96.8
Q ss_pred hhhhhhhhhhcccC-----CccchhHHHHHHHHhCCCCcch-hhhhhhHHhhcCCCCHHHHHHHHHHhcCCCch-----h
Q 003409 69 TEVFFAVTKLFQSR-----DIGLRRMVYLMIKELSPSADEV-IIVTSSLMKDMTSKTDMYRANAIRVLCRITDG-----T 137 (822)
Q Consensus 69 s~lf~~v~kl~~s~-----d~~lKrl~YL~l~~~~~~~~~~-lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~-----~ 137 (822)
..++-.|++-+.+. |-...+.+=.+|.++++.-+-. +=-.+.+..=+.+.+-..|+.-+..++++.-. +
T Consensus 269 ~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e 348 (1251)
T KOG0414|consen 269 VSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEE 348 (1251)
T ss_pred HHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchh
Confidence 34555566655443 4556677778888887654332 22334455556777889999888888885422 2
Q ss_pred ---hH----HHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH---HHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003409 138 ---LL----TQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK---RWSNEVQEAVQSRAALVQFHALALLHQIRQ 207 (822)
Q Consensus 138 ---~~----~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~---~~~~~l~~ll~d~~~~V~~~al~lL~~i~~ 207 (822)
+. ..++..+.+.+.|.+||||.+++--..|+++....-++ +.+......+.|++..|-.+|+.++..+..
T Consensus 349 ~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~ 428 (1251)
T KOG0414|consen 349 LEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLD 428 (1251)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHh
Confidence 22 23666778888999999999999999998875544343 344444555678899999999998887665
Q ss_pred cCh
Q 003409 208 NDR 210 (822)
Q Consensus 208 ~d~ 210 (822)
+.|
T Consensus 429 ~~P 431 (1251)
T KOG0414|consen 429 RHP 431 (1251)
T ss_pred cCC
Confidence 554
No 74
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=94.99 E-value=1.5 Score=47.15 Aligned_cols=275 Identities=17% Similarity=0.143 Sum_probs=157.4
Q ss_pred hhhhhhhcccCCccc-hhHHHHHHHHhCCC-Cc---chh--hhhhhHHhhc-CCCCHH---HHHHHHHHhcCCCchh---
Q 003409 72 FFAVTKLFQSRDIGL-RRMVYLMIKELSPS-AD---EVI--IVTSSLMKDM-TSKTDM---YRANAIRVLCRITDGT--- 137 (822)
Q Consensus 72 f~~v~kl~~s~d~~l-Krl~YL~l~~~~~~-~~---~~l--LviNsl~kDl-~~~n~~---vr~lALr~l~~I~~~~--- 137 (822)
++.+++-+-|+|++. -+-+|=|=+.++.+ ++ .++ =++.-|..-| .+.+++ --+.||+.+++=.+..
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkv 152 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV 152 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEE
Confidence 466666666777764 35566666666654 22 122 1234444444 333443 3456666665522211
Q ss_pred hHH-HHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHH
Q 003409 138 LLT-QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKL 216 (822)
Q Consensus 138 ~~~-~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~L 216 (822)
.++ .-.|...++|.+.+..||--|+-|+-.+--+++.. +..+... +++--.|++|..-+.+ .++
T Consensus 153 Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~-RD~vL~~---------galeplL~ll~ss~~~-----ism 217 (526)
T COG5064 153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC-RDYVLQC---------GALEPLLGLLLSSAIH-----ISM 217 (526)
T ss_pred EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhH-HHHHHhc---------CchHHHHHHHHhccch-----HHH
Confidence 111 25677889999999999999999998887665533 3222211 1111222333211111 122
Q ss_pred HHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhh-----
Q 003409 217 VTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTP----- 291 (822)
Q Consensus 217 i~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~----- 291 (822)
+... -|..-.+ ++- ..+++|-+....-+++|..++.+..+-|+..|+.+|.++.+.+.+-...
T Consensus 218 lRn~-------TWtLSNl----cRG-knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g 285 (526)
T COG5064 218 LRNA-------TWTLSNL----CRG-KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVG 285 (526)
T ss_pred HHHh-------HHHHHHh----hCC-CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcC
Confidence 2211 2443222 110 0111122233445688888899999999999999999998765443332
Q ss_pred HHHHHHHHhcCCCchhHHHHHHhhcc----------------------CcCCCCchhhHHHHHHHHhccCCcchHHHH--
Q 003409 292 AITVLQLFLSSSKPVLRFAAVRTLNK----------------------SLISDQNRSIATLAITTLLKTGNESSVDRL-- 347 (822)
Q Consensus 292 a~~~L~~~l~s~~~n~ry~aL~~l~~----------------------~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~I-- 347 (822)
+...|.-+|++++.+++--|||.+.. .+|.++-.-||+.|--++..+ +..|.+.|
T Consensus 286 ~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI-TAGnteqiqa 364 (526)
T COG5064 286 IPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNI-TAGNTEQIQA 364 (526)
T ss_pred CcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccc-ccCCHHHHHH
Confidence 23467788999998888888888754 345666667888887777664 34444443
Q ss_pred -H-----HHHHHhhhhcCHHHHHHHHHHHHHHH
Q 003409 348 -M-----KQITNFMSDIADEFKIVVVEAIRSLC 374 (822)
Q Consensus 348 -v-----~eL~~y~~~~~~~~k~~~v~aI~~la 374 (822)
+ .-|.+.++..+.-.|.++.-||..+.
T Consensus 365 vid~nliPpLi~lls~ae~k~kKEACWAisNat 397 (526)
T COG5064 365 VIDANLIPPLIHLLSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2 34445555556667788888877664
No 75
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.71 E-value=0.1 Score=41.07 Aligned_cols=48 Identities=21% Similarity=0.100 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCC------chhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHh
Q 003409 120 DMYRANAIRVLCRIT------DGTLLTQIERYLKQAIVDKNPVVASAALVSGIH 167 (822)
Q Consensus 120 ~~vr~lALr~l~~I~------~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~ 167 (822)
|.+|..|+.+|+++. .....+.+.+.+..++.|.++.||.+|+.|+-+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 468889999998764 222455688888888889999999999988754
No 76
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.68 E-value=0.075 Score=45.93 Aligned_cols=81 Identities=25% Similarity=0.256 Sum_probs=58.6
Q ss_pred hhhc-ccCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcC-C
Q 003409 76 TKLF-QSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVD-K 153 (822)
Q Consensus 76 ~kl~-~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d-~ 153 (822)
++.+ .+++..+|.-..-++.++. .+ =+++.|.+=++|+|+.+|-.|+++|+.+++++..+ .+.+.+.+ .
T Consensus 5 ~~~l~~~~~~~vr~~a~~~L~~~~--~~---~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~~~~----~L~~~l~~~~ 75 (88)
T PF13646_consen 5 LQLLQNDPDPQVRAEAARALGELG--DP---EAIPALIELLKDEDPMVRRAAARALGRIGDPEAIP----ALIKLLQDDD 75 (88)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHCCT--HH---HHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHHTHH----HHHHHHTC-S
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcC--CH---hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHH----HHHHHHcCCC
Confidence 4445 6788888888777775432 12 23566666668999999999999999998766544 45556655 5
Q ss_pred CHHHHHHHHHHH
Q 003409 154 NPVVASAALVSG 165 (822)
Q Consensus 154 ~p~VRk~A~la~ 165 (822)
+..||..|+-++
T Consensus 76 ~~~vr~~a~~aL 87 (88)
T PF13646_consen 76 DEVVREAAAEAL 87 (88)
T ss_dssp SHHHHHHHHHHH
T ss_pred cHHHHHHHHhhc
Confidence 678898888775
No 77
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=94.61 E-value=12 Score=43.75 Aligned_cols=135 Identities=14% Similarity=0.118 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHhc-ChHHHHHHHHHhc--CCCCCChhHHHHHHHHHHh--hhhcccCCCCCc
Q 003409 178 RWSNEVQEAVQSRAALVQFHALALLHQIRQN-DRLAVSKLVTSLT--RGTVRSPLAQCLLIRYTTQ--VIREAATTQTGD 252 (822)
Q Consensus 178 ~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~-d~~~i~~Li~~l~--~~~~~~~w~~v~llr~l~~--~~~~~~~d~~~~ 252 (822)
+.++.+.+.+.|..+.|.-++...|..++.- +-..+.++++.+. .+ .++. -....+..+.. +.. ..++...
T Consensus 295 ~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~-dp~~-~~~e~~~~L~~ttFV~--~V~~psL 370 (569)
T KOG1242|consen 295 DLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALA-DPSC-YTPECLDSLGATTFVA--EVDAPSL 370 (569)
T ss_pred HhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhc-Cccc-chHHHHHhhcceeeee--eecchhH
Confidence 5667777788888888877777666554432 1122555555432 11 2220 11122222211 110 2245555
Q ss_pred hhhHHHHHHHhccCChhhHHHHHHHHhhccCC--ChHhH----hhHHHHHHHHhcCCCchhHHHHHHhhc
Q 003409 253 RPFYDFLESCLRHKAEMVIFEAARAITELNGV--TNREL----TPAITVLQLFLSSSKPVLRFAAVRTLN 316 (822)
Q Consensus 253 ~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~--~~~~~----~~a~~~L~~~l~s~~~n~ry~aL~~l~ 316 (822)
..|..+|.+-++.++...--.++..+-++..- ++..+ .....-|..-+....|++|+.+.+.+.
T Consensus 371 almvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 371 ALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALG 440 (569)
T ss_pred HHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHH
Confidence 67778888878777777777777666555311 23333 233444555556678999999888874
No 78
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=2.5 Score=53.62 Aligned_cols=306 Identities=18% Similarity=0.178 Sum_probs=169.4
Q ss_pred CCCCHHHHHHHHHHhc-------CCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccCh-hHHHHHHHHHHHHh
Q 003409 116 TSKTDMYRANAIRVLC-------RITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTP-EIVKRWSNEVQEAV 187 (822)
Q Consensus 116 ~~~n~~vr~lALr~l~-------~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~p-e~v~~~~~~l~~ll 187 (822)
=||++-+++. ...+= +-...+.+..+.+++..++.++..-||-++++|+..|.+..| +.+.+-++++-+
T Consensus 1008 yDP~~~Vq~a-M~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~-- 1084 (1702)
T KOG0915|consen 1008 YDPDKKVQDA-MTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWE-- 1084 (1702)
T ss_pred cCCcHHHHHH-HHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH--
Confidence 3788877742 22222 223345666788888999999999999999999999998766 233333333322
Q ss_pred cCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhc---
Q 003409 188 QSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLR--- 264 (822)
Q Consensus 188 ~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~--- 264 (822)
.++.++-.|+..-|.+-.+....++ =.++|.+ +..++......++.+.|+|=
T Consensus 1085 ---------~~fRvmDDIKEsVR~aa~~~~~~ls----------Kl~vr~~------d~~~~~~~~~~l~~iLPfLl~~g 1139 (1702)
T KOG0915|consen 1085 ---------AAFRVMDDIKESVREAADKAARALS----------KLCVRIC------DVTNGAKGKEALDIILPFLLDEG 1139 (1702)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhhc------ccCCcccHHHHHHHHHHHHhccC
Confidence 3455555555544444443332221 0112221 11245556677788877774
Q ss_pred --cCChhhHHHHHHHHhhccCCChHhHhh----HHHHHHHHhcC-CCchhHHHHHHhhcc--CcCCCCchhhH-----HH
Q 003409 265 --HKAEMVIFEAARAITELNGVTNRELTP----AITVLQLFLSS-SKPVLRFAAVRTLNK--SLISDQNRSIA-----TL 330 (822)
Q Consensus 265 --~~~~aV~~ea~~~i~~l~~~~~~~~~~----a~~~L~~~l~s-~~~n~ry~aL~~l~~--~lL~d~d~sIr-----~~ 330 (822)
|+-+.|.--++++++.+.....+.+.+ -+..|....+. .+..+-|.++|..+. ..+++--.++. ..
T Consensus 1140 ims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmme 1219 (1702)
T KOG0915|consen 1140 IMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMME 1219 (1702)
T ss_pred cccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHH
Confidence 455789999999999987544554433 22233333343 344568999987443 22221111222 46
Q ss_pred HHHHHhccCCcchHHHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHH----HHhhcCCcchHHHHH
Q 003409 331 AITTLLKTGNESSVDRLMKQITNFMSD-IADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSN----ILREEGGFEYKKAIV 405 (822)
Q Consensus 331 aL~lL~~l~ne~Nv~~Iv~eL~~y~~~-~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~----lL~~~g~~~v~~~iv 405 (822)
+++.++...+.+-.++++.++.+-++. +.-.-|.-...-|..|+.|++....-+.+-+++ .+++ ....+.....
T Consensus 1220 Ti~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~d-RNesv~kafA 1298 (1702)
T KOG0915|consen 1220 TINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKD-RNESVRKAFA 1298 (1702)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccc-ccHHHHHHHH
Confidence 667777777777777777777776652 233345556666677777776655444444443 3343 2233555555
Q ss_pred HHHHHHHHhC-Cch-HHHHHHHHHHHhhcCCch-h-HHHhhheecCCCCC
Q 003409 406 DSIVILIRDI-PDA-KENGLLHLCEFIEDCEFT-Y-LSTQILHFLGTEGP 451 (822)
Q Consensus 406 ~~i~~iv~~~-p~~-~~~~l~~L~~~l~~~~~~-~-~~~~i~wiLGEy~~ 451 (822)
.++-.+++-- |+. +..+=..+++++++-+.+ . ....+.. |+.|..
T Consensus 1299 sAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~-Ian~s~ 1347 (1702)
T KOG0915|consen 1299 SAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISN-IANYSQ 1347 (1702)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHH-HHHhhH
Confidence 5666555532 433 333334444555443322 2 2233344 666654
No 79
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.54 E-value=0.19 Score=44.86 Aligned_cols=65 Identities=11% Similarity=-0.029 Sum_probs=53.8
Q ss_pred chhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH----HHHHHHHHHhcCCChhHHHHHH
Q 003409 135 DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK----RWSNEVQEAVQSRAALVQFHAL 199 (822)
Q Consensus 135 ~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~----~~~~~l~~ll~d~~~~V~~~al 199 (822)
.....+.++++|.+++.|.++-||-.|+-|++.+.+...+.+- +.++.+..++.|.++.|...|-
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAE 89 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH
Confidence 5567888999999999999999999999999999887765543 4555667778899999987773
No 80
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.41 E-value=0.051 Score=37.44 Aligned_cols=29 Identities=24% Similarity=0.134 Sum_probs=24.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHhhcc
Q 003409 142 IERYLKQAIVDKNPVVASAALVSGIHLLQ 170 (822)
Q Consensus 142 l~~~v~~~l~d~~p~VRk~A~la~~~l~~ 170 (822)
+.|.+.+++.|++|.||.+|+.|+..+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999988764
No 81
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.06 E-value=3.6 Score=48.03 Aligned_cols=235 Identities=14% Similarity=0.173 Sum_probs=119.8
Q ss_pred CCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhh
Q 003409 248 TQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSI 327 (822)
Q Consensus 248 d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sI 327 (822)
.|+..+.-++.+..+...-...|.-+|++.+..+....+..+.+.+.+|..+|.+.++.. ..+
T Consensus 53 FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E-----------------~~~ 115 (556)
T PF05918_consen 53 FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVE-----------------LDA 115 (556)
T ss_dssp -GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHH-----------------HHH
T ss_pred ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHH-----------------HHH
Confidence 577788888888888888999999999999999976557788999999999998766432 334
Q ss_pred HHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhC-----c--c-cHHHHHHHHHHHHhhcCCcc
Q 003409 328 ATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKF-----P--L-KYRSLMNFLSNILREEGGFE 399 (822)
Q Consensus 328 r~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~-----~--~-~~~~~v~~l~~lL~~~g~~~ 399 (822)
-+.+|..|+++-.......+.+++..- ..-++..|..++.-|..=-... . . .-+.+++.+-+.|.+
T Consensus 116 v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D----- 189 (556)
T PF05918_consen 116 VKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD----- 189 (556)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh-----
Confidence 566677777766666666666666531 1224456666665553211111 1 1 112233333444432
Q ss_pred hHHHHHHHHHHHHHhCCc---h-HHHHHHHHHHHhh---------cCCchhHHHhhheecCC---CCCCCCChHHHHHHH
Q 003409 400 YKKAIVDSIVILIRDIPD---A-KENGLLHLCEFIE---------DCEFTYLSTQILHFLGT---EGPKTSDPSKYIRYI 463 (822)
Q Consensus 400 v~~~iv~~i~~iv~~~p~---~-~~~~l~~L~~~l~---------~~~~~~~~~~i~wiLGE---y~~~~~~~~~~i~~i 463 (822)
|..+=.+.+.++++.-+- . .......|++.+. +..+++..-+++.++-. |.....+..+++.++
T Consensus 190 VTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~ 269 (556)
T PF05918_consen 190 VTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYM 269 (556)
T ss_dssp --HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHH
T ss_pred ccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHH
Confidence 323334455566654432 1 1122233333332 12233444333333322 323334457777777
Q ss_pred Hhhcc----CCCHHHHHHHHHHHHHHhhccc--cc---hHHHHHHHHHHhc
Q 003409 464 YNRVH----LENATVRAAAVSTLAKFGAMVD--AL---KPRVFVLLRRCLY 505 (822)
Q Consensus 464 ~~~~~----~e~~~vr~~~ltal~K~~~~~~--~~---~~~i~~ll~~~~~ 505 (822)
...++ .-.+..|.-+|.+++-++..+. +. -+.|..+|..++=
T Consensus 270 ~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP 320 (556)
T PF05918_consen 270 CEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMP 320 (556)
T ss_dssp HHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS-
T ss_pred HHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCC
Confidence 76643 1245678888888888877653 32 2344455554443
No 82
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.99 E-value=0.34 Score=43.95 Aligned_cols=68 Identities=13% Similarity=-0.011 Sum_probs=56.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcC
Q 003409 142 IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQSRAALVQFHALALLHQIRQND 209 (822)
Q Consensus 142 l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~-----~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d 209 (822)
+.+.+.+.+.+.++.+|+.|+.++..+....|+... ..++.+.+++.++++.|..+|+.+|..+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 677788888999999999999999999887666554 36667788888999999999999999887764
No 83
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.49 E-value=31 Score=44.44 Aligned_cols=94 Identities=15% Similarity=0.196 Sum_probs=67.0
Q ss_pred cccCCccchhHHHHHHHHhCCCC------cchhhhhhhHHhhcCCCCHHHHHHHHHHhcC--CCchhhHHHHHHHHHHhh
Q 003409 79 FQSRDIGLRRMVYLMIKELSPSA------DEVIIVTSSLMKDMTSKTDMYRANAIRVLCR--ITDGTLLTQIERYLKQAI 150 (822)
Q Consensus 79 ~~s~d~~lKrl~YL~l~~~~~~~------~~~lLviNsl~kDl~~~n~~vr~lALr~l~~--I~~~~~~~~l~~~v~~~l 150 (822)
+..+-..+|-=.-=.++.+.+.. +++-+ ++..=+.|..-.||-.||-.+++ +..++.+......|...+
T Consensus 825 l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~---~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erI 901 (1692)
T KOG1020|consen 825 LGENAIALRTKALKCLSMIVEADPSVLSRPDVQE---AVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERI 901 (1692)
T ss_pred hcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHH---HHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhc
Confidence 34444444444433444444322 23333 34455677888999999999997 457999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhhcccChhH
Q 003409 151 VDKNPVVASAALVSGIHLLQTTPEI 175 (822)
Q Consensus 151 ~d~~p~VRk~A~la~~~l~~~~pe~ 175 (822)
.|..-.|||.|+-=+-.+|...|+.
T Consensus 902 lDtgvsVRKRvIKIlrdic~e~pdf 926 (1692)
T KOG1020|consen 902 LDTGVSVRKRVIKILRDICEETPDF 926 (1692)
T ss_pred CCCchhHHHHHHHHHHHHHHhCCCh
Confidence 9999999999998777777766653
No 84
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.38 E-value=0.34 Score=48.86 Aligned_cols=104 Identities=20% Similarity=0.183 Sum_probs=76.8
Q ss_pred hhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHH--HHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH-HHHHHHHH
Q 003409 109 SSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQ--IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-RWSNEVQE 185 (822)
Q Consensus 109 Nsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~--l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~-~~~~~l~~ 185 (822)
+.+.+-+.+++..+|-.|++.+..+...-++.+ ..|.+..+..|+++++|+.|.-..-.++.++|+++. ++...++.
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~gi~~ 90 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEGIRL 90 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445566789999999999999998776666654 788899999999999999999999999999999987 34444433
Q ss_pred H------hc-CCChhH---HHHHHHHHHHHHhcChHH
Q 003409 186 A------VQ-SRAALV---QFHALALLHQIRQNDRLA 212 (822)
Q Consensus 186 l------l~-d~~~~V---~~~al~lL~~i~~~d~~~ 212 (822)
+ +. +..... ..+.+..+|.+....+..
T Consensus 91 af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~ 127 (187)
T PF12830_consen 91 AFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKS 127 (187)
T ss_pred HHHHHHHhcCCccccccccchHHHHHHHHHHhcccHh
Confidence 2 21 211111 456677788877655443
No 85
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=93.24 E-value=21 Score=43.38 Aligned_cols=147 Identities=18% Similarity=0.258 Sum_probs=94.4
Q ss_pred cCChhhHHHHHHHHhhccCCChHh----HhhHHHHHHHHhcCCCchhHHHHHHhhcc---------------------Cc
Q 003409 265 HKAEMVIFEAARAITELNGVTNRE----LTPAITVLQLFLSSSKPVLRFAAVRTLNK---------------------SL 319 (822)
Q Consensus 265 ~~~~aV~~ea~~~i~~l~~~~~~~----~~~a~~~L~~~l~s~~~n~ry~aL~~l~~---------------------~l 319 (822)
.+..-+++-|..+++++...+.-. ...++..|..+|.+++.++..+++..|.+ .+
T Consensus 260 ~kQeqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kL 339 (708)
T PF05804_consen 260 RKQEQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKL 339 (708)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH
Confidence 346778888888899886533221 13466788888888877777766555433 56
Q ss_pred CCCCchhhHHHHHHHHhccCCcchHHHHH------HHHHHhhhhcCHHHHHHHHHHHHHHHHhCc----ccHHHHHHHHH
Q 003409 320 ISDQNRSIATLAITTLLKTGNESSVDRLM------KQITNFMSDIADEFKIVVVEAIRSLCLKFP----LKYRSLMNFLS 389 (822)
Q Consensus 320 L~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv------~eL~~y~~~~~~~~k~~~v~aI~~la~k~~----~~~~~~v~~l~ 389 (822)
+..++......+|.+|+.+....++..-+ ..|..++.+ +.++..++.-+..++.--. -.+..|+..++
T Consensus 340 l~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~ 417 (708)
T PF05804_consen 340 LPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMDDEARSMFAYTDCIPQLM 417 (708)
T ss_pred hcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccCHhhHHHHhhcchHHHHH
Confidence 67777888999999999998776665433 566677763 4466556665666654110 12335778888
Q ss_pred HHHhhcCCcchHHHHHHHHHHHHH
Q 003409 390 NILREEGGFEYKKAIVDSIVILIR 413 (822)
Q Consensus 390 ~lL~~~g~~~v~~~iv~~i~~iv~ 413 (822)
++|...++..+.-+.+..+..+..
T Consensus 418 ~~Ll~~~~~~v~~eliaL~iNLa~ 441 (708)
T PF05804_consen 418 QMLLENSEEEVQLELIALLINLAL 441 (708)
T ss_pred HHHHhCCCccccHHHHHHHHHHhc
Confidence 877654444455555555555544
No 86
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=93.15 E-value=18 Score=41.27 Aligned_cols=68 Identities=15% Similarity=0.093 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCChHHHHHHH------HhhccCCCHHHHHHHHHHHHHHhh
Q 003409 420 ENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYI------YNRVHLENATVRAAAVSTLAKFGA 487 (822)
Q Consensus 420 ~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i------~~~~~~e~~~vr~~~ltal~K~~~ 487 (822)
-.+++.|++.++..+.+...+.+++=||||....++....+..+ ..-...++++||-.+|.|+-|+-.
T Consensus 352 ~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 352 YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 35789999999877788888999999999998877666555432 222235799999999999999754
No 87
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.67 E-value=15 Score=39.49 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=53.5
Q ss_pred hhHHhhcCCCCHHHHHHHHHHhcCCCch------hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccC---hhHHHHH
Q 003409 109 SSLMKDMTSKTDMYRANAIRVLCRITDG------TLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTT---PEIVKRW 179 (822)
Q Consensus 109 Nsl~kDl~~~n~~vr~lALr~l~~I~~~------~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~---pe~v~~~ 179 (822)
+.+.+=+.++||.+|..|.+.+.++... .--+..++.+.+++.+..| .+-|+-++.++..+- .-++..+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~ 83 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDL 83 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455667889999999999888887766 1224578888999999888 677788888776532 1112234
Q ss_pred HHHHHHHhcCC
Q 003409 180 SNEVQEAVQSR 190 (822)
Q Consensus 180 ~~~l~~ll~d~ 190 (822)
+..+.+.+.+.
T Consensus 84 ~k~l~~~~~~p 94 (353)
T KOG2973|consen 84 LKVLMDMLTDP 94 (353)
T ss_pred HHHHHHHhcCc
Confidence 44445554443
No 88
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.59 E-value=0.28 Score=43.34 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=50.7
Q ss_pred hhHHhhcCCCCHHHHHHHHHHhcCCCc-----hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChh
Q 003409 109 SSLMKDMTSKTDMYRANAIRVLCRITD-----GTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPE 174 (822)
Q Consensus 109 Nsl~kDl~~~n~~vr~lALr~l~~I~~-----~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe 174 (822)
+...+|++||.+-+||-||+.|.++.. ..-.+.+..-..+.+.|.++||-=+|+-|+.-|...+|+
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 456778888888899999888887532 223556777778888888888888888888888777777
No 89
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.24 E-value=0.49 Score=54.93 Aligned_cols=135 Identities=20% Similarity=0.162 Sum_probs=95.5
Q ss_pred hhhhhhccc----CCccchhHHHHHHHHhCC---C-Ccc-hhhhhhhHHhhcCCCCHHHHHHHHHHhcCC--CchhhHHH
Q 003409 73 FAVTKLFQS----RDIGLRRMVYLMIKELSP---S-ADE-VIIVTSSLMKDMTSKTDMYRANAIRVLCRI--TDGTLLTQ 141 (822)
Q Consensus 73 ~~v~kl~~s----~d~~lKrl~YL~l~~~~~---~-~~~-~lLviNsl~kDl~~~n~~vr~lALr~l~~I--~~~~~~~~ 141 (822)
+.|.+++++ +|.++-+-.|+.+..+.- + ..+ .-+.|-++. .+|+|.+|++|.-.|+.+ +-..+++.
T Consensus 895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~me---k~p~P~IR~NaVvglgD~~vcfN~~~de 971 (1128)
T COG5098 895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSME---KHPIPRIRANAVVGLGDFLVCFNTTADE 971 (1128)
T ss_pred HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh---hCCCcceeccceeeccccceehhhhhHH
Confidence 445556665 778888888987743321 1 122 222232332 289999999999998875 44668889
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcCh
Q 003409 142 IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDR 210 (822)
Q Consensus 142 l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~ 210 (822)
...++.+-|.|.+..|||++.|.+.-|+-...=-|+.-+.++..+|.|.|...---|=..+.++...|-
T Consensus 972 ~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdN 1040 (1128)
T COG5098 972 HTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDN 1040 (1128)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999887755544455567777778888887665555556667776653
No 90
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.17 E-value=31 Score=41.05 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=41.1
Q ss_pred hhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhc-CCCchhHHHHHHhhcc
Q 003409 253 RPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLS-SSKPVLRFAAVRTLNK 317 (822)
Q Consensus 253 ~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~-s~~~n~ry~aL~~l~~ 317 (822)
..+.+.+...|...-++|..||+.+++.+...+...--++++.+..++. .+.+++|-+||..+.-
T Consensus 125 n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 125 NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 3444445555556777888888888877764444444566666666555 3566677777776643
No 91
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=92.15 E-value=12 Score=43.64 Aligned_cols=258 Identities=15% Similarity=0.112 Sum_probs=125.2
Q ss_pred CchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHH---hhcccChh--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhc
Q 003409 134 TDGTLLTQIERYLKQAIVDKNPVVASAALVSGI---HLLQTTPE--IVKRWSNEVQEAVQSRAALVQFHALALLHQIRQN 208 (822)
Q Consensus 134 ~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~---~l~~~~pe--~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~ 208 (822)
+.......++..+.+.|.++.|.||-.|+--+- ++.+...| .+.++-+.+.+-+....|-|+...+.+++-|-..
T Consensus 597 r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv 676 (975)
T COG5181 597 RGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSV 676 (975)
T ss_pred ccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhh
Confidence 444556667777888899999999988886543 34433332 3345555666777777777776666555544321
Q ss_pred ChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChH-
Q 003409 209 DRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNR- 287 (822)
Q Consensus 209 d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~- 287 (822)
-+ +. .. + |. ...++..|.++|+++..-|+-.++.++-.+....+.
T Consensus 677 ~~--~~-------------------------~m--q----pP-i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pey 722 (975)
T COG5181 677 HR--FR-------------------------SM--Q----PP-ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEY 722 (975)
T ss_pred hc--cc-------------------------cc--C----Cc-hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCccc
Confidence 00 00 00 0 00 122334455555555544444444444333211111
Q ss_pred -----hHhhHHHHHHHHhcCCCchhHHHHHHhhcc---------------CcCCCCchhhH---HHHHHHHhccCCcchH
Q 003409 288 -----ELTPAITVLQLFLSSSKPVLRFAAVRTLNK---------------SLISDQNRSIA---TLAITTLLKTGNESSV 344 (822)
Q Consensus 288 -----~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~---------------~lL~d~d~sIr---~~aL~lL~~l~ne~Nv 344 (822)
...-+...+..+-+ -+-++|-.|-.++.. +=|+-.++.-| ..|+.+.-+.|-.-||
T Consensus 723 i~~rEWMRIcfeLvd~Lks-~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsV 801 (975)
T COG5181 723 IGVREWMRICFELVDSLKS-WNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSV 801 (975)
T ss_pred CCHHHHHHHHHHHHHHHHH-hhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhh
Confidence 11222223322222 222333333332211 11222222222 5666666666666554
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhc---CCcchHHHHHHHHHHHHHhCCch-HH
Q 003409 345 DRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREE---GGFEYKKAIVDSIVILIRDIPDA-KE 420 (822)
Q Consensus 345 ~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~---g~~~v~~~iv~~i~~iv~~~p~~-~~ 420 (822)
-.. -+.+|-+ .......-++++++-.-+...+.+.-|+-++..+|.++ .+.....-...+|++++-+.|.. .+
T Consensus 802 lP~--lm~dY~T-Pe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~e 878 (975)
T COG5181 802 LPT--LMSDYET-PEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDE 878 (975)
T ss_pred HHH--HHhcccC-chhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccH
Confidence 321 1223421 12234555666666665555555566777776666542 23323445566777777665543 44
Q ss_pred HHHHHHHHH
Q 003409 421 NGLLHLCEF 429 (822)
Q Consensus 421 ~~l~~L~~~ 429 (822)
.+.-||.+.
T Consensus 879 da~IHLlNl 887 (975)
T COG5181 879 DAAIHLLNL 887 (975)
T ss_pred HHHHHHHHH
Confidence 444455443
No 92
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.09 E-value=0.49 Score=37.08 Aligned_cols=49 Identities=22% Similarity=0.137 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhcccChhHHH----HHHHHHHHHhcCCChhHHHHHHHHHH
Q 003409 155 PVVASAALVSGIHLLQTTPEIVK----RWSNEVQEAVQSRAALVQFHALALLH 203 (822)
Q Consensus 155 p~VRk~A~la~~~l~~~~pe~v~----~~~~~l~~ll~d~~~~V~~~al~lL~ 203 (822)
|.||..|+.++-.+....++.++ +.++.+..++.|+++.|..+|...|-
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 67999999999988877777665 56677778888888899888876654
No 93
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.16 E-value=36 Score=41.03 Aligned_cols=338 Identities=16% Similarity=0.146 Sum_probs=172.8
Q ss_pred ccCCccchhHHHHHHHHhCCC-Ccch-----hhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchh----------------
Q 003409 80 QSRDIGLRRMVYLMIKELSPS-ADEV-----IIVTSSLMKDMTSKTDMYRANAIRVLCRITDGT---------------- 137 (822)
Q Consensus 80 ~s~d~~lKrl~YL~l~~~~~~-~~~~-----lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~---------------- 137 (822)
.|+=++-||=.-+.++.++.. ..++ -=.+++|++|-. |+-+-+.||-+++.+...+
T Consensus 33 ssTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~--D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g 110 (970)
T KOG0946|consen 33 SSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYM--DPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLG 110 (970)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccC--CHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHH
Confidence 455666788888888777754 3332 235688888876 4567778888888764333
Q ss_pred --hHH------HHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHH-------HHHHHHHHhcCCChhHHHHHHHHH
Q 003409 138 --LLT------QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKR-------WSNEVQEAVQSRAALVQFHALALL 202 (822)
Q Consensus 138 --~~~------~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~-------~~~~l~~ll~d~~~~V~~~al~lL 202 (822)
+++ ..+..+...+.+.+-+||+.|+-=+--+.+.-|--++. -+..+.++|.|..-.+--.|+.+|
T Consensus 111 ~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL 190 (970)
T KOG0946|consen 111 LWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLL 190 (970)
T ss_pred HHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHH
Confidence 122 24455666677788889988887666665555544432 334455555554333333445555
Q ss_pred HHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhcc----CChhhHHHHHHHH
Q 003409 203 HQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRH----KAEMVIFEAARAI 278 (822)
Q Consensus 203 ~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~----~~~aV~~ea~~~i 278 (822)
.++.+.+ .++.||+. | + -.++.|..++.. .+..|+-+|..++
T Consensus 191 ~eL~k~n-~~IQKlVA----------------------F--E---------NaFerLfsIIeeEGg~dGgIVveDCL~ll 236 (970)
T KOG0946|consen 191 SELVKDN-SSIQKLVA----------------------F--E---------NAFERLFSIIEEEGGLDGGIVVEDCLILL 236 (970)
T ss_pred HHHHccC-chHHHHHH----------------------H--H---------HHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 5554432 23333332 0 0 012222223322 3345777777777
Q ss_pred hhcc--CCCh-HhHh--hHHHHHHHHhc----CCCchhHHHHHHhhccCcCCCCchhhHHHHHHHHhccCCcchHHHHHH
Q 003409 279 TELN--GVTN-RELT--PAITVLQLFLS----SSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMK 349 (822)
Q Consensus 279 ~~l~--~~~~-~~~~--~a~~~L~~~l~----s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~ 349 (822)
..+- +.+. ..+. .-+..|..+|+ +.+.+.-+.. .-..=-..+|.++-.++.+.|-..+..
T Consensus 237 ~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~-----------Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~ 305 (970)
T KOG0946|consen 237 NNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWST-----------QRVQNVIEALQIVRSLVSPGNTSSITH 305 (970)
T ss_pred HHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccH-----------HHHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 6652 1111 1111 12233333332 1111111111 101111456666666677766555443
Q ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q 003409 350 QITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEG-GFEYKKAIVDSIVILIRDIPDAKENGLLHLCE 428 (822)
Q Consensus 350 eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g-~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~ 428 (822)
+=..-| .....++.|..++...| ..++..+.|..+..+++.+...+.+.....+.
T Consensus 306 q~qk~l------------------------~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p 361 (970)
T KOG0946|consen 306 QNQKAL------------------------VSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAP 361 (970)
T ss_pred HHHHHH------------------------HHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCC
Confidence 321111 12245666666666543 34566777888888888776666554444333
Q ss_pred HhhcCCchhHHHhhheecCCCCCCCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhccccc-hHHHHHHHHHHhcCC
Q 003409 429 FIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDAL-KPRVFVLLRRCLYDG 507 (822)
Q Consensus 429 ~l~~~~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~~~~-~~~i~~ll~~~~~d~ 507 (822)
.+++ |.....++|+. ++|.. .....|++.+-++--|.....+. ++-+..++..|.++.
T Consensus 362 ~~~~---Pr~sivvllms----------------m~ne~--q~~~lRcAv~ycf~s~l~dN~~gq~~~l~tllp~~~nst 420 (970)
T KOG0946|consen 362 SIPN---PRPSIVVLLMS----------------MFNEK--QPFSLRCAVLYCFRSYLYDNDDGQRKFLKTLLPSSTNST 420 (970)
T ss_pred CCCC---CccchhHHHHH----------------HHhcc--CCchHHHHHHHHHHHHHhcchhhHHHHHHHHhhhhcccc
Confidence 3322 23333333432 11211 24566777777766666555443 345667777777766
Q ss_pred CC
Q 003409 508 DD 509 (822)
Q Consensus 508 d~ 509 (822)
++
T Consensus 421 ~N 422 (970)
T KOG0946|consen 421 SN 422 (970)
T ss_pred cc
Confidence 54
No 94
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=91.08 E-value=25 Score=37.92 Aligned_cols=201 Identities=16% Similarity=0.123 Sum_probs=101.0
Q ss_pred hhHHHHHHHhcc-CChhhHHHHHHHHhhccCCC--hHhH--hhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhH
Q 003409 254 PFYDFLESCLRH-KAEMVIFEAARAITELNGVT--NREL--TPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIA 328 (822)
Q Consensus 254 ~l~~~l~~~L~~-~~~aV~~ea~~~i~~l~~~~--~~~~--~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr 328 (822)
-+++.|..-|+. ...-|...|+.....+.... .+.+ ...+..+-..++. .|+|++=+
T Consensus 213 GLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsG------------------adsdPfek 274 (524)
T KOG4413|consen 213 GLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISG------------------ADSDPFEK 274 (524)
T ss_pred hHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhC------------------CCCCcHHH
Confidence 355666655555 34457777777777664211 1111 1222333333332 23344444
Q ss_pred HHHHHHHhccCCcchHHHH-----HHHHHHh-------hhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcC
Q 003409 329 TLAITTLLKTGNESSVDRL-----MKQITNF-------MSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEG 396 (822)
Q Consensus 329 ~~aL~lL~~l~ne~Nv~~I-----v~eL~~y-------~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g 396 (822)
-+++-...+.-...|+-.+ ++.+..+ +...|++....+|+++|.+...-... +++..-|
T Consensus 275 fralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGa---------dlllkTg 345 (524)
T KOG4413|consen 275 FRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGA---------DLLLKTG 345 (524)
T ss_pred HHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchh---------HHHhccC
Confidence 4444444444444444332 2222222 23446778888999999987652221 1222223
Q ss_pred CcchHHHHHHHHHHHHHhCCch-HHHHHHHHHHHh-------hcCCc--hhHHHhhheecCCCCCCCCChHHHHHHHHhh
Q 003409 397 GFEYKKAIVDSIVILIRDIPDA-KENGLLHLCEFI-------EDCEF--TYLSTQILHFLGTEGPKTSDPSKYIRYIYNR 466 (822)
Q Consensus 397 ~~~v~~~iv~~i~~iv~~~p~~-~~~~l~~L~~~l-------~~~~~--~~~~~~i~wiLGEy~~~~~~~~~~i~~i~~~ 466 (822)
...+ -+.+..+..++... ++.+++.|...- +.+.. .+.+.+++|+=.---..--+|.+.++.|...
T Consensus 346 ppaa----ehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQ 421 (524)
T KOG4413|consen 346 PPAA----EHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQ 421 (524)
T ss_pred ChHH----HHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcC
Confidence 2211 23333444444333 233333333221 12223 3445566775433222334788888888654
Q ss_pred ccCCCHHHHHHHHHHHHHHhhc
Q 003409 467 VHLENATVRAAAVSTLAKFGAM 488 (822)
Q Consensus 467 ~~~e~~~vr~~~ltal~K~~~~ 488 (822)
..|+++++++.+++-++.+
T Consensus 422 ---pfpEihcAalktfTAiaaq 440 (524)
T KOG4413|consen 422 ---PFPEIHCAALKTFTAIAAQ 440 (524)
T ss_pred ---CChhhHHHHHHHHHHHHcC
Confidence 4689999999998888875
No 95
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.02 E-value=27 Score=38.03 Aligned_cols=339 Identities=17% Similarity=0.192 Sum_probs=162.6
Q ss_pred hhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH-HHHHHHH
Q 003409 106 IVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-RWSNEVQ 184 (822)
Q Consensus 106 LviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~-~~~~~l~ 184 (822)
==++++-+-+.+ +.-.++|=|+++.=.+.- +.++...+ +-.+++..|-++++-++.++..+.|++.. +-.+-+.
T Consensus 77 ~E~s~ll~~l~d--~ck~~~A~r~la~~~ga~--~~~it~~~-la~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv 151 (461)
T KOG4199|consen 77 EETTELLEQLAD--ECKKSLAHRVLAGKNGAH--DALITLLE-LAESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVL 151 (461)
T ss_pred HHHHHHHHHHHH--HHhhhHHHHHHhccCCCc--chhhhHHH-HhhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHH
Confidence 345666666774 788899999998643332 12222222 46678889999999999999999999876 3444444
Q ss_pred HHhcCC--ChhHHH------HHHHHHHHHHhcChH--HHHHHHHHh-c-CCCCCChhHHHHHHHHHHhhhhcccCCCCC-
Q 003409 185 EAVQSR--AALVQF------HALALLHQIRQNDRL--AVSKLVTSL-T-RGTVRSPLAQCLLIRYTTQVIREAATTQTG- 251 (822)
Q Consensus 185 ~ll~d~--~~~V~~------~al~lL~~i~~~d~~--~i~~Li~~l-~-~~~~~~~w~~v~llr~l~~~~~~~~~d~~~- 251 (822)
++|.++ +.-+.. ..-++.+|..+++-+ .+.+|+.+. . .|...---..+-.+|.+.. +| |-..
T Consensus 152 ~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~---dD--DiRV~ 226 (461)
T KOG4199|consen 152 KLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLT---DD--DIRVV 226 (461)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcC---CC--ceeee
Confidence 555433 122222 222455666554322 133444422 2 1210000001111222110 10 1000
Q ss_pred chhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCc---hhHHHHHHhhccCcCCCC----c
Q 003409 252 DRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKP---VLRFAAVRTLNKSLISDQ----N 324 (822)
Q Consensus 252 ~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~---n~ry~aL~~l~~~lL~d~----d 324 (822)
...-.+.-..+.+...-.++.||..+.+. +..+..+...|+.+--..+- ..---+|+++- .|+.|. +
T Consensus 227 fg~ah~hAr~ia~e~~l~~L~Eal~A~~d-----p~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~-~~i~d~n~~~~ 300 (461)
T KOG4199|consen 227 FGQAHGHARTIAKEGILTALTEALQAGID-----PDSLVSLSTTLKALAVRDEICKSIAESGGLDTLL-RCIDDSNEQGN 300 (461)
T ss_pred cchhhHHHHHHHHhhhHHHHHHHHHccCC-----ccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH-HHHhhhchhhH
Confidence 01112222222222334455555555432 12222222222222110000 00001222221 345553 3
Q ss_pred hhhHHHHHHHHhccCCcchHH-HHHH-----HHHHhh-h-hcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcC
Q 003409 325 RSIATLAITTLLKTGNESSVD-RLMK-----QITNFM-S-DIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEG 396 (822)
Q Consensus 325 ~sIr~~aL~lL~~l~ne~Nv~-~Iv~-----eL~~y~-~-~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g 396 (822)
+...+.++.+|-+++-.+.++ .||+ .|...+ + ..++.+-.++...|..||.|-|+.+...++ .|
T Consensus 301 r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie--------~G 372 (461)
T KOG4199|consen 301 RTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE--------AG 372 (461)
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh--------cc
Confidence 567788999998887665554 4552 233222 1 235677888999999999999987664432 23
Q ss_pred CcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCChHHHHHHHHhhccCCCHHHHH
Q 003409 397 GFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRA 476 (822)
Q Consensus 397 ~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i~~~~~~e~~~vr~ 476 (822)
+ .+...+-++.+|... ..=+.-|..|..+-....-.+-.|+- --++.+.+.-..+++.+++
T Consensus 373 ~-------a~~avqAmkahP~~a-~vQrnac~~IRNiv~rs~~~~~~~l~-----------~GiE~Li~~A~~~h~tce~ 433 (461)
T KOG4199|consen 373 A-------ADLAVQAMKAHPVAA-QVQRNACNMIRNIVVRSAENRTILLA-----------NGIEKLIRTAKANHETCEA 433 (461)
T ss_pred h-------HHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHhhhhccchHHh-----------ccHHHHHHHHHhcCccHHH
Confidence 2 233445566777532 23334455555442222211122221 1133444444556777777
Q ss_pred HHHHHHHHHhh
Q 003409 477 AAVSTLAKFGA 487 (822)
Q Consensus 477 ~~ltal~K~~~ 487 (822)
++-.|+--++.
T Consensus 434 ~akaALRDLGc 444 (461)
T KOG4199|consen 434 AAKAALRDLGC 444 (461)
T ss_pred HHHHHHHhcCc
Confidence 66666655554
No 96
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.58 E-value=2.2 Score=49.80 Aligned_cols=130 Identities=15% Similarity=0.209 Sum_probs=95.9
Q ss_pred cCCccchhHHHHHHHHhCCCCcc-hhhhhhhHHhhcCCCCHHHHHHHHHHhcCC-----CchhhHH-------HHHHHHH
Q 003409 81 SRDIGLRRMVYLMIKELSPSADE-VIIVTSSLMKDMTSKTDMYRANAIRVLCRI-----TDGTLLT-------QIERYLK 147 (822)
Q Consensus 81 s~d~~lKrl~YL~l~~~~~~~~~-~lLviNsl~kDl~~~n~~vr~lALr~l~~I-----~~~~~~~-------~l~~~v~ 147 (822)
-+|.+--|=+-+|+..+++..+- ++=--+.+.+=|.+..-..||.-+...+|+ .+++|.+ .++.-+.
T Consensus 273 ~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ 352 (1128)
T COG5098 273 LPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLV 352 (1128)
T ss_pred cccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHH
Confidence 34444435556666666665544 333468888888999999999999999986 4666655 5777778
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcccChhHH---HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcCh
Q 003409 148 QAIVDKNPVVASAALVSGIHLLQTTPEIV---KRWSNEVQEAVQSRAALVQFHALALLHQIRQNDR 210 (822)
Q Consensus 148 ~~l~d~~p~VRk~A~la~~~l~~~~pe~v---~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~ 210 (822)
.-+.|.+||+|-||+-.+.+++..+.-.+ .++.......+.|+...|.-+|+.++-.+--..|
T Consensus 353 ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 353 ERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 88899999999999999999886544333 3577777778889988999999887776654434
No 97
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.35 E-value=0.93 Score=54.08 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=72.9
Q ss_pred hhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhc
Q 003409 109 SSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQ 188 (822)
Q Consensus 109 Nsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~ 188 (822)
+-|.+..+..+...+-++|++|+|++.+..+..+.+.+. +-...++++|..|+.|+-++-...|+.++..+-.+..- .
T Consensus 449 ~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n-~ 526 (574)
T smart00638 449 ELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN-R 526 (574)
T ss_pred HHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC-C
Confidence 444455556677778899999999999999999999987 33456789999999999999888999888655444311 1
Q ss_pred CCChhHHHHHHHHHHHHHhc
Q 003409 189 SRAALVQFHALALLHQIRQN 208 (822)
Q Consensus 189 d~~~~V~~~al~lL~~i~~~ 208 (822)
..++-|-..|+.+|....+.
T Consensus 527 ~e~~EvRiaA~~~lm~t~P~ 546 (574)
T smart00638 527 AEPPEVRMAAVLVLMETKPS 546 (574)
T ss_pred CCChHHHHHHHHHHHhcCCC
Confidence 33567777887777655443
No 98
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=89.84 E-value=6.9 Score=48.82 Aligned_cols=95 Identities=19% Similarity=0.279 Sum_probs=62.3
Q ss_pred CcCCCCchhhHHHHHHHHhcc----CCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcc--cHHHHHHHHHHH
Q 003409 318 SLISDQNRSIATLAITTLLKT----GNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPL--KYRSLMNFLSNI 391 (822)
Q Consensus 318 ~lL~d~d~sIr~~aL~lL~~l----~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~--~~~~~v~~l~~l 391 (822)
.++.|++..+|+-=|+-+.-+ +-+.+=+.|+..|..|+.+-|...|....++|..+|.=... ..+.++..|.+-
T Consensus 585 sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ 664 (1431)
T KOG1240|consen 585 SLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQG 664 (1431)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHh
Confidence 567777766765544444433 46777789999999999999999999999999877653332 234455555555
Q ss_pred HhhcCCcchHHHHHHHHHHHHH
Q 003409 392 LREEGGFEYKKAIVDSIVILIR 413 (822)
Q Consensus 392 L~~~g~~~v~~~iv~~i~~iv~ 413 (822)
|.+...+ |-..++..+.-+++
T Consensus 665 ltD~EE~-Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 665 LTDGEEA-VIVSALGSLSILIK 685 (1431)
T ss_pred ccCcchh-hHHHHHHHHHHHHH
Confidence 6653333 44445555555444
No 99
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=89.63 E-value=22 Score=41.81 Aligned_cols=220 Identities=15% Similarity=0.133 Sum_probs=114.4
Q ss_pred hhcCCCCHHHHHHHHHHhcCCCchh----------hHHHHHHHHHHhh-cCCCHHHHHHHHHHHHhhcc------cChhH
Q 003409 113 KDMTSKTDMYRANAIRVLCRITDGT----------LLTQIERYLKQAI-VDKNPVVASAALVSGIHLLQ------TTPEI 175 (822)
Q Consensus 113 kDl~~~n~~vr~lALr~l~~I~~~~----------~~~~l~~~v~~~l-~d~~p~VRk~A~la~~~l~~------~~pe~ 175 (822)
..++...|.+|.++|+-.+-...-+ +.++......-++ .+++.-++++|++|+..+-+ .-|+-
T Consensus 338 ~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~ 417 (678)
T KOG1293|consen 338 ASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKR 417 (678)
T ss_pred HHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 3567788899999998766532222 2222222222222 34677899999998754322 11211
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhh
Q 003409 176 VKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPF 255 (822)
Q Consensus 176 v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l 255 (822)
. +....+..++.|++.+|+..++++++.+.- +++ +.- -++|+. -.
T Consensus 418 ~-dv~~plvqll~dp~~~i~~~~lgai~NlVm-----------efs------~~k-skfl~~----------------ng 462 (678)
T KOG1293|consen 418 N-DVAQPLVQLLMDPEIMIMGITLGAICNLVM-----------EFS------NLK-SKFLRN----------------NG 462 (678)
T ss_pred c-hhHHHHHHHhhCcchhHHHHHHHHHHHHHh-----------hcc------cHH-HHHHHc----------------Cc
Confidence 1 233344456678888888888877665443 222 111 111111 12
Q ss_pred HHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc----CcCCCCchhhHHHH
Q 003409 256 YDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK----SLISDQNRSIATLA 331 (822)
Q Consensus 256 ~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~----~lL~d~d~sIr~~a 331 (822)
++.+...+....+.+.--+.+++-++.-. .+...++.-++-+.. .+++|+|.-|.--+
T Consensus 463 Id~l~s~~~~~~~n~r~~~~~~Lr~l~f~------------------~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~ 524 (678)
T KOG1293|consen 463 IDILESMLTDPDFNSRANSLWVLRHLMFN------------------CDEEEKFQLLAKIPANLILDLINDPDWAVQEQC 524 (678)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHhc------------------chHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHH
Confidence 44455455554555554444444444211 111222222222211 45688888888888
Q ss_pred HHHHhccCCc--chHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCc
Q 003409 332 ITTLLKTGNE--SSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGF 398 (822)
Q Consensus 332 L~lL~~l~ne--~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~ 398 (822)
+.+|-.+... +.|+.++++.. +++.+|...- |++......+.++...++...++
T Consensus 525 fqllRNl~c~~~~svdfll~~~~------------~~ld~i~l~l-k~a~~~pi~ie~~~~~~~l~~~~ 580 (678)
T KOG1293|consen 525 FQLLRNLTCNSRKSVDFLLEKFK------------DVLDKIDLQL-KIAIGSPILIEFLAKKMRLLNPL 580 (678)
T ss_pred HHHHHHhhcCcHHHHHHHHHhhh------------HHHHHHHHHH-hhccCCceehhhHHHHHHhccch
Confidence 8888766544 67777776533 2344444333 66666566666665555443333
No 100
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=89.06 E-value=26 Score=43.02 Aligned_cols=97 Identities=13% Similarity=0.203 Sum_probs=70.5
Q ss_pred hHHhhcC-CCCHHHHHHHHHHhcCC---C-chhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHH---HHHHH
Q 003409 110 SLMKDMT-SKTDMYRANAIRVLCRI---T-DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIV---KRWSN 181 (822)
Q Consensus 110 sl~kDl~-~~n~~vr~lALr~l~~I---~-~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v---~~~~~ 181 (822)
.|.+-++ +.-.-++-.|++.+-++ + ...+.+...--++....|+-..|||+++-++-++....|-++ .+|+.
T Consensus 580 mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~ 659 (1529)
T KOG0413|consen 580 MIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLH 659 (1529)
T ss_pred HHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHH
Confidence 3444443 33234555666665554 2 234666666666777788888999999999999888888776 47999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHH
Q 003409 182 EVQEAVQSRAALVQFHALALLHQIR 206 (822)
Q Consensus 182 ~l~~ll~d~~~~V~~~al~lL~~i~ 206 (822)
.+..++.|.+..|+-+|.-++..+-
T Consensus 660 ~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 660 TLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHH
Confidence 9999999999999999988776543
No 101
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=88.63 E-value=54 Score=38.12 Aligned_cols=123 Identities=12% Similarity=0.209 Sum_probs=66.3
Q ss_pred chhhHHHHHHHhccCChhhHHHHHHHHh-hccCCC----hHhHhhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchh
Q 003409 252 DRPFYDFLESCLRHKAEMVIFEAARAIT-ELNGVT----NRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRS 326 (822)
Q Consensus 252 ~~~l~~~l~~~L~~~~~aV~~ea~~~i~-~l~~~~----~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~s 326 (822)
.+.+++.+.++|+++.++++++-+-+-+ .+.++- .+.....+..|.+- ++..|+.
T Consensus 595 ~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~a--------------------ln~~d~~ 654 (858)
T COG5215 595 EDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRA--------------------LNCTDRF 654 (858)
T ss_pred HHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--------------------hcchhHH
Confidence 3557888888888887776665443322 221100 01112222222222 2444555
Q ss_pred hHHHHHHHHhccCCcchHH------HHHHHHHHhhhh--cCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhh
Q 003409 327 IATLAITTLLKTGNESSVD------RLMKQITNFMSD--IADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILRE 394 (822)
Q Consensus 327 Ir~~aL~lL~~l~ne~Nv~------~Iv~eL~~y~~~--~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~ 394 (822)
+..-|+.+.-.++|.-+-+ .++.-|.+-++. ..-+.|..++.--+.+|.........|++-++-++..
T Consensus 655 v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qq 730 (858)
T COG5215 655 VLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQ 730 (858)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5555555555554443322 233344433332 2335677777777888888777888889888777654
No 102
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=88.25 E-value=20 Score=38.84 Aligned_cols=136 Identities=13% Similarity=0.105 Sum_probs=87.9
Q ss_pred HHHHHHHH-HhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHH
Q 003409 345 DRLMKQIT-NFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGL 423 (822)
Q Consensus 345 ~~Iv~eL~-~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l 423 (822)
..+++.|. .-+...+.+.|...++.+|-+|.-....+...+..++..+. .++..++..++.++.+++..|+-.
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~-~~~~~v~~~al~~l~Dll~~~g~~----- 98 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQ-KDDEEVKITALKALFDLLLTHGID----- 98 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCch-----
Confidence 36776655 45677788999999999999999887888888888888885 456667777778888877665311
Q ss_pred HHHHHHhhcCCchhHHHhhheecCCCCCCCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcc--ccchHHHHHHHH
Q 003409 424 LHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMV--DALKPRVFVLLR 501 (822)
Q Consensus 424 ~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~--~~~~~~i~~ll~ 501 (822)
.++....+. .......+++.+++-+..+++.+|+.+...++|+.... .+-...+..|+-
T Consensus 99 -----~~~~~~~~~--------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll 159 (298)
T PF12719_consen 99 -----IFDSESDND--------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLL 159 (298)
T ss_pred -----hccchhccC--------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 111110001 12223444555555555568889999999999977643 221234455555
Q ss_pred HHhc
Q 003409 502 RCLY 505 (822)
Q Consensus 502 ~~~~ 505 (822)
.+.+
T Consensus 160 ~yF~ 163 (298)
T PF12719_consen 160 LYFN 163 (298)
T ss_pred HHcC
Confidence 5554
No 103
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.12 E-value=75 Score=38.03 Aligned_cols=138 Identities=22% Similarity=0.204 Sum_probs=92.4
Q ss_pred CCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCC----Ccchh-hhhhhHHh
Q 003409 39 PQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS----ADEVI-IVTSSLMK 113 (822)
Q Consensus 39 ~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~----~~~~l-LviNsl~k 113 (822)
.+..+.+.-..+.+.+..+-+- +.+.--+..+|..+.+...|+|..+|.=+..-+..+.++ .|.++ ...-.+.+
T Consensus 55 resi~dRIl~fla~fv~sl~q~-d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~ 133 (892)
T KOG2025|consen 55 RESIPDRILSFLARFVESLPQL-DKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLI 133 (892)
T ss_pred CCCcHHHHHHHHHHHHHhhhcc-CchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHH
Confidence 3445666666677777666532 333335567888899999999999998888877666663 23332 44456667
Q ss_pred hcCCCCHHHHHHHHHHhcCCCchhhHH--HHHHHHHHhh-cCCCHHHHHHHHHHHHhhcccChhHHH
Q 003409 114 DMTSKTDMYRANAIRVLCRITDGTLLT--QIERYLKQAI-VDKNPVVASAALVSGIHLLQTTPEIVK 177 (822)
Q Consensus 114 Dl~~~n~~vr~lALr~l~~I~~~~~~~--~l~~~v~~~l-~d~~p~VRk~A~la~~~l~~~~pe~v~ 177 (822)
=+.|+.|.+|--|+-+||++-+.+-=+ .+.+..+..+ .|+++-|||+|..++.-=-...|-+++
T Consensus 134 Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 134 RLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVE 200 (892)
T ss_pred HHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHH
Confidence 778999999999999999987322111 2344444444 579999999999987643334454443
No 104
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=86.96 E-value=1.1 Score=45.89 Aligned_cols=148 Identities=15% Similarity=0.089 Sum_probs=94.6
Q ss_pred hhhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCH--HHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCC
Q 003409 76 TKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTD--MYRANAIRVLCRITDGTLLTQIERYLKQAIVDK 153 (822)
Q Consensus 76 ~kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~--~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~ 153 (822)
-.++++..++.|-++++.+....+.-+.. .+.-+.+-+.+-+. ..=++|-+.++.+.... +.+.+.+.+.+.+.
T Consensus 57 ~~L~~~~~~E~~~la~~il~~~~~~~~~~--~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~W~~s~ 132 (213)
T PF08713_consen 57 DELWESGYREERYLALLILDKRRKKLTEE--DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALELLEKWAKSD 132 (213)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCGGG--HH--HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHHHHHHHHCS
T ss_pred HHHcCCchHHHHHHHHHHhHHHhhhhhHH--HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHHHHHHHhCC
Confidence 34678888888888888885433221111 23444444443322 45556666666653332 55777788888899
Q ss_pred CHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHH
Q 003409 154 NPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQ 231 (822)
Q Consensus 154 ~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~ 231 (822)
++++||.|+++.++.+.. +-...++..+...+.|.+..|+-..--+|-++...+|..+...+.+-. ...++|..
T Consensus 133 ~~w~rR~~~v~~~~~~~~--~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~~~--~~~~~~~~ 206 (213)
T PF08713_consen 133 NEWVRRAAIVMLLRYIRK--EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQKNS--DRLSRWTL 206 (213)
T ss_dssp SHHHHHHHHHCTTTHGGG--CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHHS-------HHHH
T ss_pred cHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHCc--ccCchhHH
Confidence 999999999998887776 445567777777788888888876666788888888887777666521 13556654
No 105
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=86.89 E-value=2.5 Score=43.16 Aligned_cols=70 Identities=17% Similarity=0.128 Sum_probs=61.7
Q ss_pred hhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHH
Q 003409 113 KDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNE 182 (822)
Q Consensus 113 kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~ 182 (822)
+=+.|+|+..|-.|+-++.......-.+.+...+...+.|.+.||||+..-++-.+...+|+.+.+|+..
T Consensus 127 ~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 127 KWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 3357899999999999988888778888999999999999999999999999999999999999999986
No 106
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=86.88 E-value=10 Score=34.65 Aligned_cols=64 Identities=13% Similarity=0.063 Sum_probs=39.0
Q ss_pred eEEEEEEEee---cc--eEEEEEEeecCCCcccceeEEEEEecCCCCCceEEEecc-CCCCCCCCCceEEEEEee
Q 003409 590 YAVNVVKHIF---DR--HVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKP-LRSLPYDSPGQIFGAFEK 658 (822)
Q Consensus 590 y~v~~~kh~~---~~--~ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~ip-~~~L~~~~~~~~~v~~~~ 658 (822)
-...+++..+ .+ +|.+.| +|+. ...|+||.+++..... +++....+ ..+|+|+++.+..+.+..
T Consensus 10 ~l~I~~~~~~~~~~~~~~i~~~f--~N~s-~~~it~f~~q~avpk~--~~l~l~~~s~~~i~p~~~i~Q~~~v~~ 79 (115)
T PF02883_consen 10 GLQIGFKSEKSPNPNQGRIKLTF--GNKS-SQPITNFSFQAAVPKS--FKLQLQPPSSSTIPPGQQITQVIKVEN 79 (115)
T ss_dssp TEEEEEEEEECCETTEEEEEEEE--EE-S-SS-BEEEEEEEEEBTT--SEEEEEESS-SSB-TTTEEEEEEEEEE
T ss_pred CEEEEEEEEecCCCCEEEEEEEE--EECC-CCCcceEEEEEEeccc--cEEEEeCCCCCeeCCCCeEEEEEEEEE
Confidence 3344555555 23 556666 5664 5579999999975544 77766544 468999887666666655
No 107
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.71 E-value=41 Score=42.36 Aligned_cols=99 Identities=16% Similarity=0.097 Sum_probs=64.7
Q ss_pred hhHHh-hcCCCCHHHHHHHHHHhcC---C-----CchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccCh----hH
Q 003409 109 SSLMK-DMTSKTDMYRANAIRVLCR---I-----TDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTP----EI 175 (822)
Q Consensus 109 Nsl~k-Dl~~~n~~vr~lALr~l~~---I-----~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~p----e~ 175 (822)
+++.. +.++.+.-+|.-|-|.|-. . -...-+.++...+.+.+.+...++|+.++-|+.+|++..| +.
T Consensus 656 ~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~ 735 (1176)
T KOG1248|consen 656 FTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL 735 (1176)
T ss_pred HHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 34443 3445577777666555443 3 2334556677777777777888999999999999999888 55
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003409 176 VKRWSNEVQEAVQSRAALVQFHALALLHQIRQ 207 (822)
Q Consensus 176 v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~ 207 (822)
+.+.++++-=++.+-|...--+|+.+|+.|..
T Consensus 736 i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~ 767 (1176)
T KOG1248|consen 736 IPKLIPEVILSLKEVNVKARRNAFALLVFIGA 767 (1176)
T ss_pred HHHHHHHHHHhcccccHHHHhhHHHHHHHHHH
Confidence 55666655433444444555677777777663
No 108
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.68 E-value=20 Score=42.68 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=81.1
Q ss_pred CcCCCCchhhHH-HHHHHHhcc-CCcchHHHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhh
Q 003409 318 SLISDQNRSIAT-LAITTLLKT-GNESSVDRLMKQITNF-MSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILRE 394 (822)
Q Consensus 318 ~lL~d~d~sIr~-~aL~lL~~l-~ne~Nv~~Iv~eL~~y-~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~ 394 (822)
.++.|.|+-+|. -.+.+.++- ++.+| ..++.|+.| ++|.+++.|+.+|.+||=++-+-|+....++. +|.+
T Consensus 526 el~~dkdpilR~~Gm~t~alAy~GTgnn--kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~----lLse 599 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAYVGTGNN--KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVS----LLSE 599 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHHhccCch--hhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHH----HHhh
Confidence 566888888874 223333333 34444 677888888 78999999999999999999998876665555 4444
Q ss_pred cCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCC-c--hhHHHhhheecCCCCCCCCChHHHHHHHHhhccCC
Q 003409 395 EGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCE-F--TYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLE 470 (822)
Q Consensus 395 ~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~-~--~~~~~~i~wiLGEy~~~~~~~~~~i~~i~~~~~~e 470 (822)
.-..+|.--+.-+ .-|.-.....++ ++..|-....|.. + ..++.+.+.|+-+..+....-...||..+++++.+
T Consensus 600 s~N~HVRyGaA~A-LGIaCAGtG~~e-Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~d 676 (929)
T KOG2062|consen 600 SYNPHVRYGAAMA-LGIACAGTGLKE-AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIND 676 (929)
T ss_pred hcChhhhhhHHHH-HhhhhcCCCcHH-HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhh
Confidence 3333343322222 223333333333 2233322333321 1 12334445555555544433345566666666643
No 109
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=86.58 E-value=2.4 Score=51.12 Aligned_cols=99 Identities=12% Similarity=0.134 Sum_probs=66.7
Q ss_pred hhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHh
Q 003409 108 TSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAV 187 (822)
Q Consensus 108 iNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll 187 (822)
.+.+.+-....+..-+-.+|++|+|++.+..++.+.+.+..-- +.++.+|-.|+.|+-++-...|+.++..+-.+..=-
T Consensus 492 ~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~ 570 (618)
T PF01347_consen 492 EQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNT 570 (618)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-T
T ss_pred HHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCC
Confidence 3455555556778889999999999999998888777665433 457899999999999998889988886554442211
Q ss_pred cCCChhHHHHHHHHHHHHHhc
Q 003409 188 QSRAALVQFHALALLHQIRQN 208 (822)
Q Consensus 188 ~d~~~~V~~~al~lL~~i~~~ 208 (822)
..++-+-.+|+.+|....+.
T Consensus 571 -~e~~EvRiaA~~~lm~~~P~ 590 (618)
T PF01347_consen 571 -TEDPEVRIAAYLILMRCNPS 590 (618)
T ss_dssp -TS-HHHHHHHHHHHHHT---
T ss_pred -CCChhHHHHHHHHHHhcCCC
Confidence 23567888887777664443
No 110
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.56 E-value=6.1 Score=46.50 Aligned_cols=141 Identities=13% Similarity=0.176 Sum_probs=81.2
Q ss_pred chhhHHH-HHHHHHHhhcCCCHHHHHHHHHHHHhhcc-cChhH--------HHHHHHHHHHHhcCCChhHHHHHHHHH--
Q 003409 135 DGTLLTQ-IERYLKQAIVDKNPVVASAALVSGIHLLQ-TTPEI--------VKRWSNEVQEAVQSRAALVQFHALALL-- 202 (822)
Q Consensus 135 ~~~~~~~-l~~~v~~~l~d~~p~VRk~A~la~~~l~~-~~pe~--------v~~~~~~l~~ll~d~~~~V~~~al~lL-- 202 (822)
..+|.-. ..|.+-++|.-+|..||.+|+.-.+.+|| ..||. +++=...+.++|.|.-|+|-.-|+-=+
T Consensus 167 Veeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k 246 (1005)
T KOG1949|consen 167 VEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCK 246 (1005)
T ss_pred HHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 4444444 45667889999999999999999999998 34554 334556788999999998876654211
Q ss_pred -----HHHHhcChHHHHHHHHH----hcCCCCCChhHHHHHHHHHHhhhhcccCCCCC---chhhHHHHHHHhccCChhh
Q 003409 203 -----HQIRQNDRLAVSKLVTS----LTRGTVRSPLAQCLLIRYTTQVIREAATTQTG---DRPFYDFLESCLRHKAEMV 270 (822)
Q Consensus 203 -----~~i~~~d~~~i~~Li~~----l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~---~~~l~~~l~~~L~~~~~aV 270 (822)
.++-+. ..+.+++.. +..+ ..+ =.-|...+-+...+ . +|.. -+.++..+...|+.++..|
T Consensus 247 ~~s~fWe~iP~--~i~~~ll~kI~d~~a~d-t~s-~VR~svf~gl~~~l-~---np~sh~~le~~Lpal~~~l~D~se~V 318 (1005)
T KOG1949|consen 247 ITSKFWEMIPP--TILIDLLKKITDELAFD-TSS-DVRCSVFKGLPMIL-D---NPLSHPLLEQLLPALRYSLHDNSEKV 318 (1005)
T ss_pred HHHHHHHHcCH--HHHHHHHHHHHHHhhhc-cch-heehhHhcCcHHHH-c---CccchhHHHHHHHhcchhhhccchhH
Confidence 122221 223334332 2222 111 11122222222211 1 2332 2344555566666777888
Q ss_pred HHHHHHHHhhccC
Q 003409 271 IFEAARAITELNG 283 (822)
Q Consensus 271 ~~ea~~~i~~l~~ 283 (822)
...++..++.+.+
T Consensus 319 RvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 319 RVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887753
No 111
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.29 E-value=17 Score=39.73 Aligned_cols=309 Identities=17% Similarity=0.172 Sum_probs=166.5
Q ss_pred cCCccchhHHHHHHHHhCCC--CcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchh----hHH---HHHHHHHHhhc
Q 003409 81 SRDIGLRRMVYLMIKELSPS--ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGT----LLT---QIERYLKQAIV 151 (822)
Q Consensus 81 s~d~~lKrl~YL~l~~~~~~--~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~----~~~---~l~~~v~~~l~ 151 (822)
|.+..+-|=.|++..+..+. .....=+.-.++-=++|+++.+++.|=-+++++.... ++- -+.+.|.+++.
T Consensus 58 SDnlnlqrsaalafAeitek~vr~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmt 137 (550)
T KOG4224|consen 58 SDNLNLQRSAALAFAEITEKGVRRVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMT 137 (550)
T ss_pred ccccccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcC
Confidence 66677777788877555432 0111112223334478999999999988888754221 111 24556777777
Q ss_pred CCCHHHHHHHHHHHHhhcccChhHHH--H--HHHHHHHHhcCCChhHHHHHHHHHHHHHhc--ChHH------HHHHHHH
Q 003409 152 DKNPVVASAALVSGIHLLQTTPEIVK--R--WSNEVQEAVQSRAALVQFHALALLHQIRQN--DRLA------VSKLVTS 219 (822)
Q Consensus 152 d~~p~VRk~A~la~~~l~~~~pe~v~--~--~~~~l~~ll~d~~~~V~~~al~lL~~i~~~--d~~~------i~~Li~~ 219 (822)
|.. -||..|+-|+..|......-++ + -+.-+..+-..++-.|+-++++.|..+-.. ++.. +.-|+.-
T Consensus 138 d~v-evqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsl 216 (550)
T KOG4224|consen 138 DGV-EVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSL 216 (550)
T ss_pred CCc-EEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhh
Confidence 765 4899999999877643222121 1 233344455567888998988877654321 2221 2223333
Q ss_pred hcCCCCCChhHHHHHHH------HHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHh---
Q 003409 220 LTRGTVRSPLAQCLLIR------YTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELT--- 290 (822)
Q Consensus 220 l~~~~~~~~w~~v~llr------~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~--- 290 (822)
+..+....++--+.-|. ...+.+.+ ...+++..|..++...++-|-..|..++-.+.+ ......
T Consensus 217 l~s~d~dvqyycttaisnIaVd~~~Rk~Laq------aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas-dt~Yq~eiv 289 (550)
T KOG4224|consen 217 LKSGDLDVQYYCTTAISNIAVDRRARKILAQ------AEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS-DTEYQREIV 289 (550)
T ss_pred hccCChhHHHHHHHHhhhhhhhHHHHHHHHh------cccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-cchhhhHHH
Confidence 32221111111111111 11111111 123467788888888999999999999888853 233322
Q ss_pred --hHHHHHHHHhcCCCchhHH---HHHHhhccCcCCCCchhhHHHHHHHHhccCCcchHHHHHHH-----HHHhhhhc-C
Q 003409 291 --PAITVLQLFLSSSKPVLRF---AAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQ-----ITNFMSDI-A 359 (822)
Q Consensus 291 --~a~~~L~~~l~s~~~n~ry---~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~e-----L~~y~~~~-~ 359 (822)
.+...+..+|.++---.-. +.+|.++- .+-|-.-|++. |...++-- +
T Consensus 290 ~ag~lP~lv~Llqs~~~plilasVaCIrnisi----------------------hplNe~lI~dagfl~pLVrlL~~~dn 347 (550)
T KOG4224|consen 290 EAGSLPLLVELLQSPMGPLILASVACIRNISI----------------------HPLNEVLIADAGFLRPLVRLLRAGDN 347 (550)
T ss_pred hcCCchHHHHHHhCcchhHHHHHHHHHhhccc----------------------ccCcccceecccchhHHHHHHhcCCc
Confidence 2334566677654222111 12222211 12222222221 22222222 4
Q ss_pred HHHHHHHHHHHHHHHHhCcccHHH-----HHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHH
Q 003409 360 DEFKIVVVEAIRSLCLKFPLKYRS-----LMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKEN 421 (822)
Q Consensus 360 ~~~k~~~v~aI~~la~k~~~~~~~-----~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~ 421 (822)
.+.+-.++..+..||-.+...... -+..+..++.+ |...|..++--.+.++.- +.+.+++
T Consensus 348 EeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD-~pvsvqseisac~a~Lal-~d~~k~~ 412 (550)
T KOG4224|consen 348 EEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD-GPVSVQSEISACIAQLAL-NDNDKEA 412 (550)
T ss_pred hhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc-CChhHHHHHHHHHHHHHh-ccccHHH
Confidence 458888888888888765544333 35567787775 778888887777666554 3444443
No 112
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.93 E-value=28 Score=44.84 Aligned_cols=74 Identities=11% Similarity=0.135 Sum_probs=47.0
Q ss_pred CcCCCCchhhHH---HHHHHHhccCCcchHHHHHHHHHH-hhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Q 003409 318 SLISDQNRSIAT---LAITTLLKTGNESSVDRLMKQITN-FMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNIL 392 (822)
Q Consensus 318 ~lL~d~d~sIr~---~aL~lL~~l~ne~Nv~~Iv~eL~~-y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL 392 (822)
.-++|.|.++++ -|.-.|++...++....++.++.. |+.+.++.. ......+..++...++....+.+.++.++
T Consensus 1284 ~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~-siscatis~Ian~s~e~Lkn~asaILPLi 1361 (1702)
T KOG0915|consen 1284 PGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLK-SISCATISNIANYSQEMLKNYASAILPLI 1361 (1702)
T ss_pred hccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCcc-chhHHHHHHHHHhhHHHHHhhHHHHHHHH
Confidence 345888888885 678888898899888888877664 555444433 33333333355555555555666555443
No 113
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=84.52 E-value=50 Score=39.02 Aligned_cols=106 Identities=18% Similarity=0.177 Sum_probs=80.1
Q ss_pred cCCCCHHHHHHHHHHhcCCC-------chhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH-----H-HHH
Q 003409 115 MTSKTDMYRANAIRVLCRIT-------DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----R-WSN 181 (822)
Q Consensus 115 l~~~n~~vr~lALr~l~~I~-------~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~-----~-~~~ 181 (822)
+.+|.-.+.+.+|-++||+. ..-+....+.-+.+.+.++.+.+|+++.-.+.|+.=...+..+ + ..+
T Consensus 428 l~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~ 507 (678)
T KOG1293|consen 428 LMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPAN 507 (678)
T ss_pred hhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHH
Confidence 36788899999999999974 2223344677788888999999999999999998654444332 2 445
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHh
Q 003409 182 EVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSL 220 (822)
Q Consensus 182 ~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l 220 (822)
.+.++.+|+++.||-.++.+|-.+--+.+..+..++..+
T Consensus 508 ~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~ 546 (678)
T KOG1293|consen 508 LILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKF 546 (678)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhh
Confidence 667788899999999999998876655556677777654
No 114
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=84.49 E-value=59 Score=35.22 Aligned_cols=111 Identities=13% Similarity=0.178 Sum_probs=75.2
Q ss_pred hhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc-------CcCCCCch
Q 003409 253 RPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK-------SLISDQNR 325 (822)
Q Consensus 253 ~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~-------~lL~d~d~ 325 (822)
..+-+++.+.+++.+++|.-.|++++.-..-...+.-......+...+...+..+|-.|++.+.. ..+.....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 44557778999999999999999888554322233333444445555555688899999988754 22211111
Q ss_pred hhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHH
Q 003409 326 SIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCL 375 (822)
Q Consensus 326 sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~ 375 (822)
.. .......+++-+.+|+.+.+++.+..++..+++|-.
T Consensus 106 ~~------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 106 ND------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred cC------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 00 455566788888888888888999999999999754
No 115
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=84.20 E-value=83 Score=35.89 Aligned_cols=210 Identities=17% Similarity=0.210 Sum_probs=124.3
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHhhcc----CcCCCCchhhHHHHHHHHhccCCcc----hHHHHHHHHHHhh-hhcCHH
Q 003409 291 PAITVLQLFLSSSKPVLRFAAVRTLNK----SLISDQNRSIATLAITTLLKTGNES----SVDRLMKQITNFM-SDIADE 361 (822)
Q Consensus 291 ~a~~~L~~~l~s~~~n~ry~aL~~l~~----~lL~d~d~sIr~~aL~lL~~l~ne~----Nv~~Iv~eL~~y~-~~~~~~ 361 (822)
+.+..+..++.+=++++.+..+..+-+ -.++..+..+|.-++.++..++|.- -++.+++.+..-. ...+.+
T Consensus 166 ~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~ 245 (415)
T PF12460_consen 166 RLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSE 245 (415)
T ss_pred cHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcc
Confidence 344455555555455554332211111 2344555778888888888888872 2444555444433 222333
Q ss_pred HHHHHHHHH----HHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCc-----------------hHH
Q 003409 362 FKIVVVEAI----RSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPD-----------------AKE 420 (822)
Q Consensus 362 ~k~~~v~aI----~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~-----------------~~~ 420 (822)
-+...+..+ ..+..|..+....+++.++++|.+. +++..+...+.-++...|+ ...
T Consensus 246 ~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~---~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~ 322 (415)
T PF12460_consen 246 LRPQALEILIWITKALVMRGHPLATELLDKLLELLSSP---ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT 322 (415)
T ss_pred hhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCCh---hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH
Confidence 344443333 4456688888888999999999763 2455555555555544232 234
Q ss_pred HHHHHHHHHhhcCCc---hhHHHhhheecCCCCCC---CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcccc-ch
Q 003409 421 NGLLHLCEFIEDCEF---TYLSTQILHFLGTEGPK---TSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDA-LK 493 (822)
Q Consensus 421 ~~l~~L~~~l~~~~~---~~~~~~i~wiLGEy~~~---~~~~~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~~~-~~ 493 (822)
.++..|.+.++.... +.-..+..+++. ..|. .++-.+.+..+...+.++++.++.+.+.++.-+....|+ +.
T Consensus 323 ~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~-~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~ 401 (415)
T PF12460_consen 323 QVLPKLLEGFKEADDEIKSNYLTALSHLLK-NVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS 401 (415)
T ss_pred HHHHHHHHHHhhcChhhHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH
Confidence 566666666655432 233555667776 3332 234556777778888888999999999999888877664 45
Q ss_pred HHHHHHHHHHh
Q 003409 494 PRVFVLLRRCL 504 (822)
Q Consensus 494 ~~i~~ll~~~~ 504 (822)
+.+..|+.+.+
T Consensus 402 ~hl~sLI~~LL 412 (415)
T PF12460_consen 402 EHLSSLIPRLL 412 (415)
T ss_pred HHHHHHHHHHH
Confidence 55666666554
No 116
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=84.05 E-value=9 Score=43.23 Aligned_cols=143 Identities=15% Similarity=0.257 Sum_probs=77.3
Q ss_pred hhhhHHHH-HhhhcCC-CCChHHhHHHHHHHHHHHhcCCCCCccc--hhhhhhhhhhhccc-CCccchhHHHHHHHHhCC
Q 003409 25 EKGAVLQE-ARVFNDP-QLDPRRCSQVITKLLYLLNQGETFTKIE--ATEVFFAVTKLFQS-RDIGLRRMVYLMIKELSP 99 (822)
Q Consensus 25 ~k~~~lqE-~r~f~~~-~~~~~k~~~~l~kli~~~~~G~~f~~~e--~s~lf~~v~kl~~s-~d~~lKrl~YL~l~~~~~ 99 (822)
++.+.+++ +..++.. +.+ +.+.++..|+-++.-|. |+--| -..+.-.+...+.. .+...|++..=.+.+++.
T Consensus 283 ~~~~~v~~~l~~~~g~e~a~--~~k~alsel~~m~~e~s-fsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~ 359 (516)
T KOG2956|consen 283 DQSALVADLLKEISGSERAS--ERKEALSELPKMLCEGS-FSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLT 359 (516)
T ss_pred chhHHHHHHHHhccCccchh--HHHHHHHHHHHHHHccc-hhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH
Confidence 55555554 5566665 333 33445988888888774 22111 11222334455654 889999998877777665
Q ss_pred C-----CcchhhhhhhHHhhcCCCCHHHHHHH----HHHhcCCCch----------------------------------
Q 003409 100 S-----ADEVIIVTSSLMKDMTSKTDMYRANA----IRVLCRITDG---------------------------------- 136 (822)
Q Consensus 100 ~-----~~~~lLviNsl~kDl~~~n~~vr~lA----Lr~l~~I~~~---------------------------------- 136 (822)
. -|..-++|..+..--.++++-+.+.| +|+++++...
T Consensus 360 ~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~ 439 (516)
T KOG2956|consen 360 NQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSA 439 (516)
T ss_pred hchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCH
Confidence 3 13344555444433334433222222 3344433221
Q ss_pred ----hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcc
Q 003409 137 ----TLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQ 170 (822)
Q Consensus 137 ----~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~ 170 (822)
.++.++.|.+.++..+.+..|||.|+.|+.-++.
T Consensus 440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 1344566666666666666677777777665553
No 117
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.03 E-value=1.5e+02 Score=38.64 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=84.7
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHhh--cCCcchHHHHHHHHHHHHHhCCchHHHH
Q 003409 346 RLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLK-YRSLMNFLSNILRE--EGGFEYKKAIVDSIVILIRDIPDAKENG 422 (822)
Q Consensus 346 ~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~-~~~~v~~l~~lL~~--~g~~~v~~~iv~~i~~iv~~~p~~~~~~ 422 (822)
.++.+|..-+..-+.++|.+++.-+|.+-...... .+.+-++...+|+. .+..+|.=+++....+++.++|+..+..
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~ 338 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKAS 338 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHH
Confidence 45677777666667889999998888875432211 12233333333332 2456677788999999999999876654
Q ss_pred HHHHHHHhhcCCchhHHHhhheecCC--CCC--CCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhc
Q 003409 423 LLHLCEFIEDCEFTYLSTQILHFLGT--EGP--KTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAM 488 (822)
Q Consensus 423 l~~L~~~l~~~~~~~~~~~i~wiLGE--y~~--~~~~~~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~ 488 (822)
...+.-...+.++ ..+.+..-+++. ... ..-.|. .+...-.|.-.-...||-.++..+++++.+
T Consensus 339 ~~~~~l~~~~~D~-~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 339 TILLALRERDLDE-DVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHHhhcCCh-hhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4433322233322 222222222222 111 112234 677777777777889999999999999985
No 118
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=82.34 E-value=50 Score=40.70 Aligned_cols=131 Identities=11% Similarity=0.183 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhcCCC--chhhHHHHHHHHHHhh-cCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHH
Q 003409 120 DMYRANAIRVLCRIT--DGTLLTQIERYLKQAI-VDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQF 196 (822)
Q Consensus 120 ~~vr~lALr~l~~I~--~~~~~~~l~~~v~~~l-~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~ 196 (822)
+.+|+-+.-+|++++ ...++.-.+|.+.+-| ......||.+-++++..++-.|--.++++++.+...|+|+++.|--
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRr 1024 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRR 1024 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHH
Confidence 678999999999865 4557776777665555 4566789999999999999888888999999999999999999999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChh
Q 003409 197 HALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEM 269 (822)
Q Consensus 197 ~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~a 269 (822)
+++.+|..+-+.+ .--|--..++|++..++.. .++.+..--=++..+|+..++-
T Consensus 1025 qt~ilL~rLLq~~----------------~vKw~G~Lf~Rf~l~l~D~---~edIr~~a~f~~~~vL~~~~P~ 1078 (1529)
T KOG0413|consen 1025 QTIILLARLLQFG----------------IVKWNGELFIRFMLALLDA---NEDIRNDAKFYISEVLQSEEPN 1078 (1529)
T ss_pred HHHHHHHHHHhhh----------------hhhcchhhHHHHHHHHccc---CHHHHHHHHHHHHHHHhhcCcc
Confidence 9988776655431 1236667778887765433 2332222112345666666653
No 119
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=81.47 E-value=1.4e+02 Score=36.66 Aligned_cols=364 Identities=14% Similarity=0.157 Sum_probs=176.5
Q ss_pred CchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHh---c
Q 003409 134 TDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIV--KRWSNEVQEAVQSRAALVQFHALALLHQIRQ---N 208 (822)
Q Consensus 134 ~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v--~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~---~ 208 (822)
....+-..+-+...+...|..|.||++++--+..+-+..+... ...++...++..|....|...|+..+..+-. .
T Consensus 230 ~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~ 309 (759)
T KOG0211|consen 230 PDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDD 309 (759)
T ss_pred ChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCC
Confidence 3344555567777888899999999999987766554443322 2466777788877767777777655544322 2
Q ss_pred ChHHHHH----HHHHhcCCCCCChhHHHHHH-----HHHHhhhhcccCCCC-CchhhHHHHHHHhccCChhhHHHHHHHH
Q 003409 209 DRLAVSK----LVTSLTRGTVRSPLAQCLLI-----RYTTQVIREAATTQT-GDRPFYDFLESCLRHKAEMVIFEAARAI 278 (822)
Q Consensus 209 d~~~i~~----Li~~l~~~~~~~~w~~v~ll-----r~l~~~~~~~~~d~~-~~~~l~~~l~~~L~~~~~aV~~ea~~~i 278 (822)
+..-.+. ++.... -..|.+-..+ .+...+ +|+ ....+.......++.....+-++++.-.
T Consensus 310 ~~d~~~~~~~~l~~~~~----d~~~~v~~~~~~~~~~L~~~~------~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~ 379 (759)
T KOG0211|consen 310 DDDVVKSLTESLVQAVE----DGSWRVSYMVADKFSELSSAV------GPSATRTQLVPPVSNLLKDEEWEVRYAIAKKV 379 (759)
T ss_pred chhhhhhhhHHHHHHhc----ChhHHHHHHHhhhhhhHHHHh------ccccCcccchhhHHHHhcchhhhhhHHhhcch
Confidence 1111111 222222 1124433322 111111 121 1123344444455554444555444433
Q ss_pred hhcc---CC---ChHhHhhHHHHHHHHhcCCCchhHHHHHHhhc-------c------------CcCCCCchhhHHHHHH
Q 003409 279 TELN---GV---TNRELTPAITVLQLFLSSSKPVLRFAAVRTLN-------K------------SLISDQNRSIATLAIT 333 (822)
Q Consensus 279 ~~l~---~~---~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~-------~------------~lL~d~d~sIr~~aL~ 333 (822)
-.+. +. +.--...+...++.|+.++..-+|-+...... + ..++|.++.++.--++
T Consensus 380 ~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~ 459 (759)
T KOG0211|consen 380 QKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLID 459 (759)
T ss_pred HHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHH
Confidence 2221 11 11112233456666666655555533222111 1 3457777767655553
Q ss_pred HH--hccCC-cchHHHHH----HHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhh---cCCcchHHH
Q 003409 334 TL--LKTGN-ESSVDRLM----KQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILRE---EGGFEYKKA 403 (822)
Q Consensus 334 lL--~~l~n-e~Nv~~Iv----~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~---~g~~~v~~~ 403 (822)
.+ +.-++ ..++..+. ..|.+...+..-..|.+++..|..+|...- ....-+.+..+++. ..-|.+.+.
T Consensus 460 ~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~ 537 (759)
T KOG0211|consen 460 KLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREA 537 (759)
T ss_pred HHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHH
Confidence 22 11122 22233222 333333344444567788888888886532 11111222222221 123456666
Q ss_pred HHHHHHHHHHhCC--chHHHHHHHHHHHhhc--CCchhHHHhhheecCCCCCCCCChHHHHHHHHhhccCCCHHHHHHHH
Q 003409 404 IVDSIVILIRDIP--DAKENGLLHLCEFIED--CEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAV 479 (822)
Q Consensus 404 iv~~i~~iv~~~p--~~~~~~l~~L~~~l~~--~~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i~~~~~~e~~~vr~~~l 479 (822)
+...+..++..+- -.+...+.++.....+ ..+-......+..+.+-....--..+++..+++-.....+.||.-+.
T Consensus 538 aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nva 617 (759)
T KOG0211|consen 538 AARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVA 617 (759)
T ss_pred HHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHH
Confidence 6666666665543 2233344444444333 22211111122222221111111234444555555566789998888
Q ss_pred HHHHHHhhcc--ccchHHHHHHHHHHhcCCCC
Q 003409 480 STLAKFGAMV--DALKPRVFVLLRRCLYDGDD 509 (822)
Q Consensus 480 tal~K~~~~~--~~~~~~i~~ll~~~~~d~d~ 509 (822)
-.+.|+...- +.....|..++.....|.|-
T Consensus 618 k~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~ 649 (759)
T KOG0211|consen 618 KHLPKILKLLDESVRDEEVLPLLETLSSDQEL 649 (759)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHhccCccc
Confidence 8777766432 45677899999988886653
No 120
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=81.46 E-value=99 Score=34.82 Aligned_cols=334 Identities=13% Similarity=0.138 Sum_probs=163.1
Q ss_pred CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH--HHHHHHHHHhcCCChhH
Q 003409 117 SKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK--RWSNEVQEAVQSRAALV 194 (822)
Q Consensus 117 ~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~--~~~~~l~~ll~d~~~~V 194 (822)
..|+.+...-+..|+.+..++..+++...+-..+...+..++ +.|- +....+ .|..-+. ++.+.|.-.
T Consensus 61 ~~~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~------lf~~---~a~~~k~~~~~~fl~-ll~r~d~~i 130 (442)
T KOG2759|consen 61 ANNAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVD------LFHD---YAHKLKRTEWLSFLN-LLNRQDTFI 130 (442)
T ss_pred cccHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHH------HHHH---HHHhhhccchHHHHH-HHhcCChHH
Confidence 345567777788888888888888887777777765443321 1111 111111 1443332 333333222
Q ss_pred HHHHHHHHHHHHhcCh-------HH-H-HHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhh-----HHHHH
Q 003409 195 QFHALALLHQIRQNDR-------LA-V-SKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPF-----YDFLE 260 (822)
Q Consensus 195 ~~~al~lL~~i~~~d~-------~~-i-~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l-----~~~l~ 260 (822)
+--+...+-.+..... .. + ..|-..+..+ .++-.....+|+++.++.- |..+..+ ..++.
T Consensus 131 v~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~--~~~~~~~~~~rcLQ~ll~~----~eyR~~~v~adg~~~l~ 204 (442)
T KOG2759|consen 131 VEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSS--TNNDYIQFAARCLQTLLRV----DEYRYAFVIADGVSLLI 204 (442)
T ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcc--CCCchHHHHHHHHHHHhcC----cchhheeeecCcchhhH
Confidence 1112222222211100 00 1 1122222221 2222333345666655443 2222221 23444
Q ss_pred HHh-c-cCChhhHHHHHHHHhhccCCChH--hH--hhHHHHHHHHhcC--CCchhHH--HHHHhhccCcCCCC-chhhHH
Q 003409 261 SCL-R-HKAEMVIFEAARAITELNGVTNR--EL--TPAITVLQLFLSS--SKPVLRF--AAVRTLNKSLISDQ-NRSIAT 329 (822)
Q Consensus 261 ~~L-~-~~~~aV~~ea~~~i~~l~~~~~~--~~--~~a~~~L~~~l~s--~~~n~ry--~aL~~l~~~lL~d~-d~sIr~ 329 (822)
..+ + +.+--+.|+.+-+|+.|+-+++. .+ -..+..|..+++. ++-.+|. +.++ +++... +++.++
T Consensus 205 ~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~----Nll~k~~~~~~~k 280 (442)
T KOG2759|consen 205 RILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFR----NLLDKGPDRETKK 280 (442)
T ss_pred HHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhccCchhhHHH
Confidence 444 2 24556999999999998633321 11 1123333334432 2222332 2222 556444 677776
Q ss_pred HHHHHHhccCCcchHHHHHHHHHH--hhhhcCHHH-------HHHHHHHHHHHHHhCcccHHHHHHHHH-HHHhhcCCcc
Q 003409 330 LAITTLLKTGNESSVDRLMKQITN--FMSDIADEF-------KIVVVEAIRSLCLKFPLKYRSLMNFLS-NILREEGGFE 399 (822)
Q Consensus 330 ~aL~lL~~l~ne~Nv~~Iv~eL~~--y~~~~~~~~-------k~~~v~aI~~la~k~~~~~~~~v~~l~-~lL~~~g~~~ 399 (822)
.+..... ..++...++-|.+ |- |.+. +..+...+..|+. .+.|.+-+. +.|.- ..++
T Consensus 281 ~~~~~mv----~~~v~k~l~~L~~rkys---DEDL~~di~~L~e~L~~svq~LsS-----FDeY~sEl~sG~L~W-SP~H 347 (442)
T KOG2759|consen 281 DIASQMV----LCKVLKTLQSLEERKYS---DEDLVDDIEFLTEKLKNSVQDLSS-----FDEYKSELRSGRLEW-SPVH 347 (442)
T ss_pred HHHHHHH----hcCchHHHHHHHhcCCC---cHHHHHHHHHHHHHHHHHHHhhcc-----HHHHHHHHHhCCcCC-Cccc
Confidence 4433322 1223333433332 31 2222 2333333333331 223333222 22322 2333
Q ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCChHHHHH------HHHhhccCCCHH
Q 003409 400 YKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIR------YIYNRVHLENAT 473 (822)
Q Consensus 400 v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~~~~i~------~i~~~~~~e~~~ 473 (822)
..+..|.-=.+ +..+-.-.+++.|.++++....|...+.+++=||||....+.....+. .+.+-...++|.
T Consensus 348 k~e~FW~eNa~---rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~ 424 (442)
T KOG2759|consen 348 KSEKFWRENAD---RLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPE 424 (442)
T ss_pred cccchHHHhHH---HHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCch
Confidence 45555642211 112223358899999999988999999999999999888776655553 345556679999
Q ss_pred HHHHHHHHHHHHh
Q 003409 474 VRAAAVSTLAKFG 486 (822)
Q Consensus 474 vr~~~ltal~K~~ 486 (822)
||--++.|+-|+-
T Consensus 425 Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 425 VRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987753
No 121
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=80.35 E-value=9.7 Score=47.58 Aligned_cols=132 Identities=18% Similarity=0.178 Sum_probs=97.4
Q ss_pred hhhhcccCCccchhHHHHHHHHhCC-----CCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcC----CCchhhHHHHHHH
Q 003409 75 VTKLFQSRDIGLRRMVYLMIKELSP-----SADEVIIVTSSLMKDMTSKTDMYRANAIRVLCR----ITDGTLLTQIERY 145 (822)
Q Consensus 75 v~kl~~s~d~~lKrl~YL~l~~~~~-----~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~----I~~~~~~~~l~~~ 145 (822)
++.|++.++..+||-.--.+..++. .+++++| +.|.--|+|+++..||.=...+.. ++.++.-+++.|.
T Consensus 583 v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iL--shLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPL 660 (1431)
T KOG1240|consen 583 VSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVIL--SHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPL 660 (1431)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchH--HHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHH
Confidence 4445666666777755544443332 3566666 567777888999999998888874 4667789999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhhccc---ChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhc
Q 003409 146 LKQAIVDKNPVVASAALVSGIHLLQT---TPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQN 208 (822)
Q Consensus 146 v~~~l~d~~p~VRk~A~la~~~l~~~---~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~ 208 (822)
+.++|+|..+.|-=+|+-|+--|++. ..-.+.++++.+.-+|+-.|.=+-..+++.++.+.++
T Consensus 661 l~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 661 LQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 99999999999999999887655542 2344556778777888888877777888888776654
No 122
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.98 E-value=2e+02 Score=37.47 Aligned_cols=336 Identities=12% Similarity=0.126 Sum_probs=157.8
Q ss_pred HHHHHHHHhcCCCCCccchhhhhhhhhh----hcccCCccchhHHHHHHH--H-----hC--CCCcchhhhhhhHHhhcC
Q 003409 50 ITKLLYLLNQGETFTKIEATEVFFAVTK----LFQSRDIGLRRMVYLMIK--E-----LS--PSADEVIIVTSSLMKDMT 116 (822)
Q Consensus 50 l~kli~~~~~G~~f~~~e~s~lf~~v~k----l~~s~d~~lKrl~YL~l~--~-----~~--~~~~~~lLviNsl~kDl~ 116 (822)
+..|+.++.=--+|+...+.++|--+++ |....+...+|-.|+-=+ . +. +.+++++-..=++-.|+.
T Consensus 74 vseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~ 153 (1266)
T KOG1525|consen 74 VSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLA 153 (1266)
T ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHH
Confidence 4455555555557777777888877777 444667888888886431 1 11 123444444434444543
Q ss_pred -CCCH----HHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHH----HHHhhcccChhHHHHHHHHHHHHh
Q 003409 117 -SKTD----MYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALV----SGIHLLQTTPEIVKRWSNEVQEAV 187 (822)
Q Consensus 117 -~~n~----~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~l----a~~~l~~~~pe~v~~~~~~l~~ll 187 (822)
.+-+ ....+|...++.+.+ .-..+..-+...|....+-.++.|.- ++.++-..--+.+..|+.. .+
T Consensus 154 ~~~~~~~v~~~~~i~~~li~e~d~--v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~---~~ 228 (1266)
T KOG1525|consen 154 RKGHPKKVFNMLDIAIMLITEEDT--VQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNS---CL 228 (1266)
T ss_pred hccccHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHH---HH
Confidence 2222 133444444444321 12223444444444443444444433 3333322222222233332 22
Q ss_pred cC---CChhHHHHHHHHHHHHHhcChHHHHHHHHHhc-CCCCCChhHHHHHHHHHHhhhhcc--cCCCCCchhhHHHHHH
Q 003409 188 QS---RAALVQFHALALLHQIRQNDRLAVSKLVTSLT-RGTVRSPLAQCLLIRYTTQVIREA--ATTQTGDRPFYDFLES 261 (822)
Q Consensus 188 ~d---~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~-~~~~~~~w~~v~llr~l~~~~~~~--~~d~~~~~~l~~~l~~ 261 (822)
.. +-..+...-.-+++++..-.|..+...++++. +-..-....-.+-+.++++.+... .+. +.-..+......
T Consensus 229 ~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~ 307 (1266)
T KOG1525|consen 229 TEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLG 307 (1266)
T ss_pred hhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHH
Confidence 21 11122223334666666666666666666554 000111222334455555543321 001 111222332333
Q ss_pred HhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHh-cCCCchhHHHHHHh-----------------hcc--CcCC
Q 003409 262 CLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFL-SSSKPVLRFAAVRT-----------------LNK--SLIS 321 (822)
Q Consensus 262 ~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l-~s~~~n~ry~aL~~-----------------l~~--~lL~ 321 (822)
.+...+..|..+|++.+-+.--+ ...+..+...+..+- .+.|+++|....-. |.- ..+.
T Consensus 308 r~~D~~~~vR~~~v~~~~~~l~~-~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~r 386 (1266)
T KOG1525|consen 308 RFNDISVEVRMECVESIKQCLLN-NPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLR 386 (1266)
T ss_pred HhccCChhhhhhHHHHhHHHHhc-CchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHh
Confidence 34556788999999988665322 222333333222221 23455543221111 100 3446
Q ss_pred CCchhhHHHHHHHHhccCC-------c------chHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhC-cccHHHHHHH
Q 003409 322 DQNRSIATLAITTLLKTGN-------E------SSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKF-PLKYRSLMNF 387 (822)
Q Consensus 322 d~d~sIr~~aL~lL~~l~n-------e------~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~-~~~~~~~v~~ 387 (822)
|.-..||+.|+.-|..+=+ + .++..|-++|+.+....+.++| .+|..|....+-. +...+.=|.-
T Consensus 387 DKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r-~~vE~il~~~L~P~~l~~q~Rmk~ 465 (1266)
T KOG1525|consen 387 DKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDR-LLVERILAEYLVPYPLSTQERMKH 465 (1266)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHH-HHHHHHHHHhhCCCCCCHHHHHHH
Confidence 7667788777776644422 1 2344455677776666666677 6666665555432 2344555666
Q ss_pred HHHHHh
Q 003409 388 LSNILR 393 (822)
Q Consensus 388 l~~lL~ 393 (822)
+..++.
T Consensus 466 l~~~l~ 471 (1266)
T KOG1525|consen 466 LYQLLA 471 (1266)
T ss_pred HHHHHh
Confidence 666665
No 123
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=78.87 E-value=93 Score=32.94 Aligned_cols=227 Identities=19% Similarity=0.197 Sum_probs=125.1
Q ss_pred HHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhc--CCCCHHHHHH
Q 003409 48 QVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDM--TSKTDMYRAN 125 (822)
Q Consensus 48 ~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl--~~~n~~vr~l 125 (822)
+..++++++-+.|.+.+ .-.++|.+-..+--+|.=+-.++...... ++ ++.+..=| .+..|++|--
T Consensus 21 ~r~rALf~Lr~l~~~~~-------i~~i~ka~~d~s~llkhe~ay~LgQ~~~~--~A---v~~l~~vl~desq~pmvRhE 88 (289)
T KOG0567|consen 21 NRFRALFNLRNLLGPAA-------IKAITKAFIDDSALLKHELAYVLGQMQDE--DA---VPVLVEVLLDESQEPMVRHE 88 (289)
T ss_pred HHHHHHHhhhccCChHH-------HHHHHHhcccchhhhccchhhhhhhhccc--hh---hHHHHHHhcccccchHHHHH
Confidence 34677777777776322 23355555555555555444445443322 22 23333333 3567899999
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhc------------------ccChhHHHHHHHHHHHHh
Q 003409 126 AIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLL------------------QTTPEIVKRWSNEVQEAV 187 (822)
Q Consensus 126 ALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~------------------~~~pe~v~~~~~~l~~ll 187 (822)
|=-+|+.++.++..+.+.++. .|+..-||-+..+|+-|+= |.-|.. .+-+.++...+
T Consensus 89 Aaealga~~~~~~~~~l~k~~----~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~-~ssv~~lr~~l 163 (289)
T KOG0567|consen 89 AAEALGAIGDPESLEILTKYI----KDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPAN-LSSVHELRAEL 163 (289)
T ss_pred HHHHHHhhcchhhHHHHHHHh----cCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccc-cccHHHHHHHH
Confidence 999999999888877766665 6777788888777776541 112211 11122233322
Q ss_pred cCCChhHHHHHHHHHHHHHhcC-hHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhcc-
Q 003409 188 QSRAALVQFHALALLHQIRQND-RLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRH- 265 (822)
Q Consensus 188 ~d~~~~V~~~al~lL~~i~~~d-~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~- 265 (822)
-|.+...... -..++.++... ..++.-|+..+. ..|..-+...=-.+.++ + .|.. +..|...|..
T Consensus 164 ld~t~~l~~R-y~amF~LRn~g~EeaI~al~~~l~---~~SalfrhEvAfVfGQl--~---s~~a----i~~L~k~L~d~ 230 (289)
T KOG0567|consen 164 LDETKPLFER-YRAMFYLRNIGTEEAINALIDGLA---DDSALFRHEVAFVFGQL--Q---SPAA----IPSLIKVLLDE 230 (289)
T ss_pred HhcchhHHHH-HhhhhHhhccCcHHHHHHHHHhcc---cchHHHHHHHHHHHhhc--c---chhh----hHHHHHHHHhh
Confidence 2221111100 11222333321 244555665554 33555555443334332 1 2333 3333333332
Q ss_pred -CChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHH
Q 003409 266 -KAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFA 310 (822)
Q Consensus 266 -~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~ 310 (822)
-+++|.-||+.++..+.+ ..++.+|+.++...++.+|-.
T Consensus 231 ~E~pMVRhEaAeALGaIa~------e~~~~vL~e~~~D~~~vv~es 270 (289)
T KOG0567|consen 231 TEHPMVRHEAAEALGAIAD------EDCVEVLKEYLGDEERVVRES 270 (289)
T ss_pred hcchHHHHHHHHHHHhhcC------HHHHHHHHHHcCCcHHHHHHH
Confidence 468999999999999964 257889999988877777643
No 124
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=77.66 E-value=21 Score=31.49 Aligned_cols=79 Identities=13% Similarity=0.117 Sum_probs=58.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhhcccCh-h--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChH-HHHHHHH
Q 003409 143 ERYLKQAIVDKNPVVASAALVSGIHLLQTTP-E--IVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL-AVSKLVT 218 (822)
Q Consensus 143 ~~~v~~~l~d~~p~VRk~A~la~~~l~~~~p-e--~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~-~i~~Li~ 218 (822)
...+...+.|+.|-||-.|+.-+-++++... . -+...+.-..+.+.|.|+-|=.+|+..|..+....|. .+..|+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~ 84 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLD 84 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence 3445666788999999999999999997665 2 2346777777889999998888888877777766665 4555665
Q ss_pred Hhc
Q 003409 219 SLT 221 (822)
Q Consensus 219 ~l~ 221 (822)
.|.
T Consensus 85 ~y~ 87 (92)
T PF10363_consen 85 EYA 87 (92)
T ss_pred HHh
Confidence 553
No 125
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=77.13 E-value=9.9 Score=32.14 Aligned_cols=56 Identities=23% Similarity=0.233 Sum_probs=31.5
Q ss_pred eEEEEEEeecCCCcccceeEEEEEecCCCCCceEEE-eccCCCCCCCCCceEEEEEeeCC
Q 003409 602 HVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVA-SKPLRSLPYDSPGQIFGAFEKPE 660 (822)
Q Consensus 602 ~ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~-~ip~~~L~~~~~~~~~v~~~~~~ 660 (822)
.+-+.+.++|+. +..+.|+++.+...++ |+... ...+..|+||++..+-+.+..+.
T Consensus 6 ~~~~~~tv~N~g-~~~~~~v~~~l~~P~G--W~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 6 TVTVTLTVTNTG-TAPLTNVSLSLSLPEG--WTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEE--S-SS-BSS-EEEEE--TT--SE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred EEEEEEEEEECC-CCceeeEEEEEeCCCC--ccccCCccccccCCCCCEEEEEEEEECCC
Confidence 566778889988 4468999999886554 88222 12234899999877777776664
No 126
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.06 E-value=65 Score=39.28 Aligned_cols=163 Identities=15% Similarity=0.215 Sum_probs=91.0
Q ss_pred chhhHHHHHHHH---hccCCcchHH-----HHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHhCcccHHHHHH------HH
Q 003409 324 NRSIATLAITTL---LKTGNESSVD-----RLMKQITNFMS-DIADEFKIVVVEAIRSLCLKFPLKYRSLMN------FL 388 (822)
Q Consensus 324 d~sIr~~aL~lL---~~l~ne~Nv~-----~Iv~eL~~y~~-~~~~~~k~~~v~aI~~la~k~~~~~~~~v~------~l 388 (822)
|+++...||.=| +.|+||+.+. .++.-|...++ +.+.++--.+.+++..||+-+|.....+|+ ++
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 444544444333 3456666544 34444444443 456788888999999999999998888777 33
Q ss_pred HHHHhhcCCcchHHHHHHHHHHHHHhCCc--hHHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCC-CC----hHHHHH
Q 003409 389 SNILREEGGFEYKKAIVDSIVILIRDIPD--AKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKT-SD----PSKYIR 461 (822)
Q Consensus 389 ~~lL~~~g~~~v~~~iv~~i~~iv~~~p~--~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~-~~----~~~~i~ 461 (822)
-+++..+- .++.+++..++..|-+++|- ++..++.....||+=.. ..+.+.++-+....|..+ ++ ..+.+.
T Consensus 261 ~kL~~Iey-iDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFS-i~aQR~AlaiaaN~Cksi~sd~f~~v~ealP 338 (1051)
T KOG0168|consen 261 EKLLTIEY-IDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFS-IHAQRVALAIAANCCKSIRSDEFHFVMEALP 338 (1051)
T ss_pred Hhhhhhhh-hHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCccchHHHHHHH
Confidence 45555432 35788899999999999885 34455555555554221 122222222222222222 11 223344
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHHhhc
Q 003409 462 YIYNRVHLENATVRAAAVSTLAKFGAM 488 (822)
Q Consensus 462 ~i~~~~~~e~~~vr~~~ltal~K~~~~ 488 (822)
.+.+.+..++...-.....|+++++..
T Consensus 339 lL~~lLs~~D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 339 LLTPLLSYQDKKPIESVCICLTRIADG 365 (1051)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 455554444443334444556665543
No 127
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=76.52 E-value=51 Score=29.28 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=35.4
Q ss_pred eEEEEEEeecCCCcccceeEEEEEecCCCCCceEEEeccC-CCCCCCCCceEEEEEeeC
Q 003409 602 HVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPL-RSLPYDSPGQIFGAFEKP 659 (822)
Q Consensus 602 ~ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~ip~-~~L~~~~~~~~~v~~~~~ 659 (822)
.+.+.+...|+.+ ..++||.+++..... +......+. +.|+|+++.+..+.+..+
T Consensus 19 ~~~i~~~~~N~s~-~~it~f~~~~avpk~--~~l~l~~~s~~~l~p~~~i~q~~~i~~~ 74 (104)
T smart00809 19 LIRITLTFTNKSP-SPITNFSFQAAVPKS--LKLQLQPPSSPTLPPGGQITQVLKVENP 74 (104)
T ss_pred eEEEEEEEEeCCC-CeeeeEEEEEEcccc--eEEEEcCCCCCccCCCCCEEEEEEEECC
Confidence 3444444457664 479999999985444 666665443 479999876666666554
No 128
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.34 E-value=41 Score=39.98 Aligned_cols=94 Identities=17% Similarity=0.254 Sum_probs=67.4
Q ss_pred hhhhhhHHhhcCCCCHHHHHHHHHHhcC---CCchhh--------HHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccC-
Q 003409 105 IIVTSSLMKDMTSKTDMYRANAIRVLCR---ITDGTL--------LTQIERYLKQAIVDKNPVVASAALVSGIHLLQTT- 172 (822)
Q Consensus 105 lLviNsl~kDl~~~n~~vr~lALr~l~~---I~~~~~--------~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~- 172 (822)
.|.--.|=+-|+-+|-.+|.+|+..+-+ |++|+. ++.-..++.++|.|.-|.||+.|+.++.|++...
T Consensus 173 rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 173 RLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 4667788899999999999999988776 566654 4445567888999999999999999999887544
Q ss_pred ----hhHHHHHHHHHHHHhc-CCChhHHHHH
Q 003409 173 ----PEIVKRWSNEVQEAVQ-SRAALVQFHA 198 (822)
Q Consensus 173 ----pe~v~~~~~~l~~ll~-d~~~~V~~~a 198 (822)
|.++.+.+..+.+-+. |....|-.+.
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~sv 283 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSV 283 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhH
Confidence 3444555555554333 4333443333
No 129
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.22 E-value=33 Score=37.60 Aligned_cols=95 Identities=12% Similarity=0.127 Sum_probs=49.0
Q ss_pred ChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc--CcCCCCchhhHHHHHHHHhccCCcchHH---HHH-----HHHHHh
Q 003409 285 TNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK--SLISDQNRSIATLAITTLLKTGNESSVD---RLM-----KQITNF 354 (822)
Q Consensus 285 ~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~--~lL~d~d~sIr~~aL~lL~~l~ne~Nv~---~Iv-----~eL~~y 354 (822)
+.+.+..|..-|.-++.+=|+...+..+.-+.. .++++++..+|.+|..++-. |-.+|-. .++ +.|..-
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt-~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGT-AVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHH-HHhcCHHHHHHHHHcccHHHHHHH
Confidence 444555666666666665554444443222211 35677777777777776654 3333322 222 112211
Q ss_pred -hhhcCHHHHHHHHHHHHHHHHhCccc
Q 003409 355 -MSDIADEFKIVVVEAIRSLCLKFPLK 380 (822)
Q Consensus 355 -~~~~~~~~k~~~v~aI~~la~k~~~~ 380 (822)
-++.+.+.|..+.-||..+...+++-
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g 201 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPG 201 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHH
Confidence 22344556666666666666666654
No 130
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=75.06 E-value=4.9 Score=40.42 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=48.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHh
Q 003409 144 RYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSL 220 (822)
Q Consensus 144 ~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l 220 (822)
+.+.+-+.+.++++||.|..+..+.+.+ ..-...++..+..++.|.+.-|+-+.--+|.++...+|..+...+...
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~ 183 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKN 183 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 5667777777888888888777776654 112334555555566666666665555566677666776666665543
No 131
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.43 E-value=1.7e+02 Score=33.61 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=47.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHhhccc---ChhHHH-HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcCh
Q 003409 142 IERYLKQAIVDKNPVVASAALVSGIHLLQT---TPEIVK-RWSNEVQEAVQSRAALVQFHALALLHQIRQNDR 210 (822)
Q Consensus 142 l~~~v~~~l~d~~p~VRk~A~la~~~l~~~---~pe~v~-~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~ 210 (822)
++.-+.+++...+|-.|+..++-++.+--+ -|..|. .+++.+..++++... -.-|+.+||++.-+|+
T Consensus 346 iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~ 416 (791)
T KOG1222|consen 346 IVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD 416 (791)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH
Confidence 445566777889999999988888776432 255555 488888888876542 1126778999887764
No 132
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=74.06 E-value=96 Score=34.85 Aligned_cols=75 Identities=17% Similarity=0.358 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHH
Q 003409 345 DRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKY--RSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKEN 421 (822)
Q Consensus 345 ~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~--~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~ 421 (822)
..+++-|..-..+.++.+|...+..++.+|.+.|.-. .--+.++++.+.+ |.++..+.++.++..++ +.|+.|.+
T Consensus 107 ~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lL-d~p~tR~y 183 (371)
T PF14664_consen 107 RGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID-GSFSISESLLDTLLYLL-DSPRTRKY 183 (371)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHh-CCcchhhh
Confidence 3456666666667788899999999999999998743 2345677777765 77777777777777766 46777654
No 133
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.57 E-value=2.7e+02 Score=35.58 Aligned_cols=96 Identities=19% Similarity=0.260 Sum_probs=56.2
Q ss_pred CCCchhhHHHHHHHHhccCC---------cchHHHHHHHHHHhhh--hcCHHH--HHHHHHHHHHHHHhCcc-----cHH
Q 003409 321 SDQNRSIATLAITTLLKTGN---------ESSVDRLMKQITNFMS--DIADEF--KIVVVEAIRSLCLKFPL-----KYR 382 (822)
Q Consensus 321 ~d~d~sIr~~aL~lL~~l~n---------e~Nv~~Iv~eL~~y~~--~~~~~~--k~~~v~aI~~la~k~~~-----~~~ 382 (822)
++-|..-|+-|.++|..||+ +. +..++++...-+. .+.++. +.--|-++..+...|.. ...
T Consensus 748 Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~ 826 (1176)
T KOG1248|consen 748 KEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLE 826 (1176)
T ss_pred ccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 77778888889999888883 22 1223333222111 123322 22226677777766643 223
Q ss_pred HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCch
Q 003409 383 SLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDA 418 (822)
Q Consensus 383 ~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~ 418 (822)
.+++++..+|.. +.-++...++..|+-++...|+.
T Consensus 827 ~li~~V~~~L~s-~sreI~kaAI~fikvlv~~~pe~ 861 (1176)
T KOG1248|consen 827 KLISMVCLYLAS-NSREIAKAAIGFIKVLVYKFPEE 861 (1176)
T ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555553 45567788888888888888875
No 134
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.38 E-value=2.3e+02 Score=34.92 Aligned_cols=171 Identities=13% Similarity=0.088 Sum_probs=104.3
Q ss_pred hhhHHhhcCCC-CHHHHHHHHHHhcC---CCchh-----hHHHHHHHHHHhhcC-CCHHHHHHHHHHHHhhcccChhHHH
Q 003409 108 TSSLMKDMTSK-TDMYRANAIRVLCR---ITDGT-----LLTQIERYLKQAIVD-KNPVVASAALVSGIHLLQTTPEIVK 177 (822)
Q Consensus 108 iNsl~kDl~~~-n~~vr~lALr~l~~---I~~~~-----~~~~l~~~v~~~l~d-~~p~VRk~A~la~~~l~~~~pe~v~ 177 (822)
.+.|..-|+.. +|..+--||.-||. ++.++ ++..+.|.+.+++.| .++-+---|+-|+++|+...|+-+.
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 35666677655 88888888888885 34333 467799999999998 5688999999999999988876432
Q ss_pred ---------HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHH---HHHHhcCCCCCChhHHHHHHHHHHhhhhcc
Q 003409 178 ---------RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSK---LVTSLTRGTVRSPLAQCLLIRYTTQVIREA 245 (822)
Q Consensus 178 ---------~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~---Li~~l~~~~~~~~w~~v~llr~l~~~~~~~ 245 (822)
-++.+++..- ---|.=.+|.+|..|.+..+.++.+ |..-+.|-.-++--+|-.-|-++...+..-
T Consensus 249 ~vV~~~aIPvl~~kL~~Ie---yiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIE---YIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred eeecccchHHHHHhhhhhh---hhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2444444321 1235557788888888887777654 221111000223334444444444332210
Q ss_pred -cCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhc
Q 003409 246 -ATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITEL 281 (822)
Q Consensus 246 -~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l 281 (822)
+.++...-+-+..|.++|++...-++-.++-+++.+
T Consensus 326 ~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri 362 (1051)
T KOG0168|consen 326 RSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRI 362 (1051)
T ss_pred CCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 113333344567888999887655555555555554
No 135
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=73.36 E-value=64 Score=38.49 Aligned_cols=169 Identities=13% Similarity=0.162 Sum_probs=98.9
Q ss_pred hhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcC---CcchH
Q 003409 325 RSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEG---GFEYK 401 (822)
Q Consensus 325 ~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g---~~~v~ 401 (822)
...|+.=+|.|...++...+..|.+.|..- ++++.-...++..+.... +.|+ ..+++.+..++.... ...+.
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~--~~~~~ea~~~~~~~~~~~-~~Pt--~~~l~~l~~l~~~~~~~~~~~l~ 414 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKNK--KITPLEAAQLLAVLPHTA-RYPT--EEILKALFELAESPEVQKQPYLR 414 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhh-hcCC--HHHHHHHHHHhcCccccccHHHH
Confidence 457788889999999999999998888763 234333333333332222 3343 477888888887521 22255
Q ss_pred HHHHHHHHHHHHh----CCchH----HHHHHHHHHHhhcC---CchhHHHhhheecCCCCCCCCChHHHHHHHHhhccCC
Q 003409 402 KAIVDSIVILIRD----IPDAK----ENGLLHLCEFIEDC---EFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLE 470 (822)
Q Consensus 402 ~~iv~~i~~iv~~----~p~~~----~~~l~~L~~~l~~~---~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i~~~~~~e 470 (822)
..+|-.+-.++++ .+..+ +..+..+.+.+.++ ...+-+..++-.||--|+. .....+..+...-..-
T Consensus 415 ~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~--~~i~~l~~~l~~~~~~ 492 (574)
T smart00638 415 ESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP--SSIKVLEPYLEGAEPL 492 (574)
T ss_pred HHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh--hHHHHHHHhcCCCCCC
Confidence 6666666666653 23222 44555555555443 2223345567778877763 3333444333321223
Q ss_pred CHHHHHHHHHHHHHHhhcccc-chHHHHHHH
Q 003409 471 NATVRAAAVSTLAKFGAMVDA-LKPRVFVLL 500 (822)
Q Consensus 471 ~~~vr~~~ltal~K~~~~~~~-~~~~i~~ll 500 (822)
++.+|.+++.|+-+++.++|+ .++.+..++
T Consensus 493 ~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~ 523 (574)
T smart00638 493 STFIRLAAILALRNLAKRDPRKVQEVLLPIY 523 (574)
T ss_pred CHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 678999999999999887774 344444443
No 136
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=72.96 E-value=1.5e+02 Score=32.35 Aligned_cols=182 Identities=16% Similarity=0.278 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCCC-----cchhhhhh-hHHh---hc-
Q 003409 46 CSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSA-----DEVIIVTS-SLMK---DM- 115 (822)
Q Consensus 46 ~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~-----~~~lLviN-sl~k---Dl- 115 (822)
|...|.|++-.+. |-.+. ..+.++.-..+-.+|-++|-+..=.+-.+.+.+ .++++|+| -|-| |+
T Consensus 63 cVscLERLfkake-gahla----pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI 137 (524)
T KOG4413|consen 63 CVSCLERLFKAKE-GAHLA----PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI 137 (524)
T ss_pred HHHHHHHHHhhcc-chhhc----hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH
Confidence 6666777665544 43322 233333333455666666665554443444433 24566654 4444 33
Q ss_pred CCCCHHHHHHHHHHhcCCC-chhhHHHHHHH-------HHHhhcCCCHHHHHHHHHHHHhhcccChhHHHH-----HHHH
Q 003409 116 TSKTDMYRANAIRVLCRIT-DGTLLTQIERY-------LKQAIVDKNPVVASAALVSGIHLLQTTPEIVKR-----WSNE 182 (822)
Q Consensus 116 ~~~n~~vr~lALr~l~~I~-~~~~~~~l~~~-------v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~-----~~~~ 182 (822)
-+.|..+--.|+.++.+|. .|.-.+.+.+. ...+....+..+|-...--+.+++..+|+.... ++..
T Consensus 138 ggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldl 217 (524)
T KOG4413|consen 138 GGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDL 217 (524)
T ss_pred cCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHH
Confidence 4567788888888888874 23333332221 111122245556666666667888888887542 3333
Q ss_pred HH-HHhcCCChhHHHHHHHHHHHHHhcC--hH-----HHHHHHHHhcCCCCCChhHHH
Q 003409 183 VQ-EAVQSRAALVQFHALALLHQIRQND--RL-----AVSKLVTSLTRGTVRSPLAQC 232 (822)
Q Consensus 183 l~-~ll~d~~~~V~~~al~lL~~i~~~d--~~-----~i~~Li~~l~~~~~~~~w~~v 232 (822)
+. ++-...|..|..+.+-+.+++.... +. .+..++..+-.|....|+...
T Consensus 218 LeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekf 275 (524)
T KOG4413|consen 218 LEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKF 275 (524)
T ss_pred HHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHH
Confidence 32 3333467889999998888876431 11 123333333244455677655
No 137
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=71.72 E-value=7 Score=34.85 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=11.0
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHhh
Q 003409 290 TPAITVLQLFLSSSKPVLRFAAVRTL 315 (822)
Q Consensus 290 ~~a~~~L~~~l~s~~~n~ry~aL~~l 315 (822)
...+.++...++.+++.+||.|.+.+
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL 51 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEAL 51 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 33334444444444444444444443
No 138
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=71.30 E-value=2.9e+02 Score=34.98 Aligned_cols=366 Identities=14% Similarity=0.107 Sum_probs=172.0
Q ss_pred HHHHHHHHHhc--CCCchhhHHHHHHHHHHhhcC--------CCHHHHHHHHHHHHhhcccC-hhHHHHHHHHH-----H
Q 003409 121 MYRANAIRVLC--RITDGTLLTQIERYLKQAIVD--------KNPVVASAALVSGIHLLQTT-PEIVKRWSNEV-----Q 184 (822)
Q Consensus 121 ~vr~lALr~l~--~I~~~~~~~~l~~~v~~~l~d--------~~p~VRk~A~la~~~l~~~~-pe~v~~~~~~l-----~ 184 (822)
+=-|+||--|+ .+..|+.++.+.+.|.+++.- ....||-+|+..+--+.+.+ |..++.++..+ .
T Consensus 398 HgacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~ 477 (1133)
T KOG1943|consen 398 HGACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLI 477 (1133)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHH
Confidence 33456665554 578899999999999999843 23569999998776655543 55555544433 3
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhcC---hH--HHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHH
Q 003409 185 EAVQSRAALVQFHALALLHQIRQND---RL--AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFL 259 (822)
Q Consensus 185 ~ll~d~~~~V~~~al~lL~~i~~~d---~~--~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l 259 (822)
.++-|+.-.+-.+|.+++.|.--.- |. .+...+..+..+...+-|..+. +.++. .|...+.+++-+
T Consensus 478 ~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~--~~ia~-------~~~y~~~~f~~L 548 (1133)
T KOG1943|consen 478 VALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLC--VSIAE-------FSGYREPVFNHL 548 (1133)
T ss_pred HHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHh--HHHHh-------hhhHHHHHHHHH
Confidence 4556877777788888888764321 11 1222222222111222344421 12222 233334444333
Q ss_pred -HHHhccCChhhHHHHHHHHhhccCCChHhHh-hH-HHHHHHHhcCCCchhHHHHHHhhcc-----CcCCCCchhhHHHH
Q 003409 260 -ESCLRHKAEMVIFEAARAITELNGVTNRELT-PA-ITVLQLFLSSSKPVLRFAAVRTLNK-----SLISDQNRSIATLA 331 (822)
Q Consensus 260 -~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~-~a-~~~L~~~l~s~~~n~ry~aL~~l~~-----~lL~d~d~sIr~~a 331 (822)
..-+.|=+..+...|+.++..+.-..++... -. ..+|..++ +++.+.|....-.... ..+.--..++.-..
T Consensus 549 ~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~l-s~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~ 627 (1133)
T KOG1943|consen 549 LTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTL-SKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENR 627 (1133)
T ss_pred HhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhc-CCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHH
Confidence 2225556788888999998887533344332 11 22333333 3566665432221111 11110000000000
Q ss_pred HHHHhccCCcchHHHHHHHHH--HhhhhcCHHHHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHhhcCCcchHHHH
Q 003409 332 ITTLLKTGNESSVDRLMKQIT--NFMSDIADEFKIVVVEAIRSLCLKFPL-----KYRSLMNFLSNILREEGGFEYKKAI 404 (822)
Q Consensus 332 L~lL~~l~ne~Nv~~Iv~eL~--~y~~~~~~~~k~~~v~aI~~la~k~~~-----~~~~~v~~l~~lL~~~g~~~v~~~i 404 (822)
+.-+. .|+.++. .|-+....-+|....+.|..+...-+. ..+..-..+.+.++.. . .+++.+
T Consensus 628 i~~l~---------~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~-n-~i~~~a 696 (1133)
T KOG1943|consen 628 IAGLL---------SIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP-N-QIRDAA 696 (1133)
T ss_pred hhhhh---------hhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch-H-HHHHHH
Confidence 00000 0111111 011111122333333333333221111 0111111223333221 1 355666
Q ss_pred HHHHHHHHHhC---CchHH-HHHHHHHHHhhcCCchhHHHhhheecCCCCCC-CCCh-H-HHHHHHHhhccCC-CHHHHH
Q 003409 405 VDSIVILIRDI---PDAKE-NGLLHLCEFIEDCEFTYLSTQILHFLGTEGPK-TSDP-S-KYIRYIYNRVHLE-NATVRA 476 (822)
Q Consensus 405 v~~i~~iv~~~---p~~~~-~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~-~~~~-~-~~i~~i~~~~~~e-~~~vr~ 476 (822)
+..+.+++..+ .+-.+ .++.+....+.+|.+...++.+.-.+|--... +.-+ . ...+.++.-+... .++-|.
T Consensus 697 v~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~ 776 (1133)
T KOG1943|consen 697 VSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQ 776 (1133)
T ss_pred HHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHH
Confidence 66666666532 22222 35677777777777777777766666654321 1111 1 1122222333333 677788
Q ss_pred HHHHHHHHHhhc-----cc----cchHHHHHHHHHHhcCC
Q 003409 477 AAVSTLAKFGAM-----VD----ALKPRVFVLLRRCLYDG 507 (822)
Q Consensus 477 ~~ltal~K~~~~-----~~----~~~~~i~~ll~~~~~d~ 507 (822)
+.+-|+++.... ++ +.+..++..+..|+.|.
T Consensus 777 ~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~ 816 (1133)
T KOG1943|consen 777 QNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDS 816 (1133)
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhccccc
Confidence 888887776542 22 33445556666666554
No 139
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=71.20 E-value=35 Score=34.19 Aligned_cols=115 Identities=20% Similarity=0.299 Sum_probs=63.9
Q ss_pred chhHHHHHHHHhCCCC------cchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCch-----------------------
Q 003409 86 LRRMVYLMIKELSPSA------DEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDG----------------------- 136 (822)
Q Consensus 86 lKrl~YL~l~~~~~~~------~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~----------------------- 136 (822)
.||..|-||..+.++. ...-|. ..+ +.||++-+|+.|+.+++.+-+.
T Consensus 18 ~~r~l~~yW~~llP~~~~~~~~~~~sLl-t~i---l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~ 93 (182)
T PF13251_consen 18 DKRSLFGYWPALLPDSVLQGRPATPSLL-TCI---LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSS 93 (182)
T ss_pred CCceeHhhHHHHCCCCCCcCCCCCcchh-HHH---HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHH
Confidence 3778899998888765 111122 233 3478999999999999875322
Q ss_pred ---hhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHhhc------ccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 003409 137 ---TLLTQIERYLKQAIVD-KNPVVASAALVSGIHLL------QTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQ 204 (822)
Q Consensus 137 ---~~~~~l~~~v~~~l~d-~~p~VRk~A~la~~~l~------~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~ 204 (822)
.|+-.+-+.+..++.+ .++-+---.+-|+.-+. +-.++++.+++..+...+.++|+.|..+++..+.-
T Consensus 94 tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~ 171 (182)
T PF13251_consen 94 TLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGA 171 (182)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 2223333333334433 23322222222222222 12346666677777777777777777666655543
No 140
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.97 E-value=2.5e+02 Score=34.14 Aligned_cols=381 Identities=14% Similarity=0.159 Sum_probs=193.6
Q ss_pred hhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHH----HHHHHHHHhhcCCCH-HHHHHHHHHHHhhcc-cChhHHHHH
Q 003409 106 IVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLT----QIERYLKQAIVDKNP-VVASAALVSGIHLLQ-TTPEIVKRW 179 (822)
Q Consensus 106 LviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~----~l~~~v~~~l~d~~p-~VRk~A~la~~~l~~-~~pe~v~~~ 179 (822)
-+=|-+.+-|.++.|..+..|=.+++.|..-|+-. .++..+.....+..| .||..++-++--++. ..|+.+..-
T Consensus 90 qVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~ 169 (859)
T KOG1241|consen 90 QVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQ 169 (859)
T ss_pred HHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 45566777788888888888777777776655544 455555666666554 499999999887775 568877655
Q ss_pred HHHHHHHhc------CCChhHHHHHHHHHHHHHhcCh------HHHHHHHHHhc--CCCCCChhHHHH----HHHHHHhh
Q 003409 180 SNEVQEAVQ------SRAALVQFHALALLHQIRQNDR------LAVSKLVTSLT--RGTVRSPLAQCL----LIRYTTQV 241 (822)
Q Consensus 180 ~~~l~~ll~------d~~~~V~~~al~lL~~i~~~d~------~~i~~Li~~l~--~~~~~~~w~~v~----llr~l~~~ 241 (822)
.+.+...+. ..+..|-.+|+..|+..-.--+ ...++++.-.- +. .+..=.++. |.|+...|
T Consensus 170 sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq-~~d~~i~~aa~~ClvkIm~Ly 248 (859)
T KOG1241|consen 170 SNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQ-SPDEEIQVAAFQCLVKIMSLY 248 (859)
T ss_pred HhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeeccc-CCcHHHHHHHHHHHHHHHHHH
Confidence 554443332 3456788888877774321100 11111221000 11 122222222 23333332
Q ss_pred hhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhc---c-
Q 003409 242 IREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLN---K- 317 (822)
Q Consensus 242 ~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~---~- 317 (822)
...- .|--.+.|+.+-..-+++.++.|.++++..-..+. .+.+..+...=.-.=....|.-.|-+...+. .
T Consensus 249 Y~~m--~~yM~~alfaitl~amks~~deValQaiEFWstic---eEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~ 323 (859)
T KOG1241|consen 249 YEFM--EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTIC---EEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPV 323 (859)
T ss_pred HHHH--HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHH
Confidence 1110 01111234555555667889999999998766553 2333333332222222222211222222221 1
Q ss_pred ---------CcCCCCchhhHHHH---HHHHhccCCcchHHHHHHHHHHhhh----hcCHHHHHHHHHHHHHHHH-hCccc
Q 003409 318 ---------SLISDQNRSIATLA---ITTLLKTGNESSVDRLMKQITNFMS----DIADEFKIVVVEAIRSLCL-KFPLK 380 (822)
Q Consensus 318 ---------~lL~d~d~sIr~~a---L~lL~~l~ne~Nv~~Iv~eL~~y~~----~~~~~~k~~~v~aI~~la~-k~~~~ 380 (822)
..-.|+|-++.+-| |.++-..|-. .||+....|+. .-|=.+|...+-+.|.+-+ .-+.+
T Consensus 324 Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D----~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~ 399 (859)
T KOG1241|consen 324 LLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD----DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDK 399 (859)
T ss_pred HHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc----cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhh
Confidence 22234445666554 3333333332 45566666654 4445667777777776643 11122
Q ss_pred ----HHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchH------HHHHHHHHHHhhcCCchhHHHhhheec---C
Q 003409 381 ----YRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAK------ENGLLHLCEFIEDCEFTYLSTQILHFL---G 447 (822)
Q Consensus 381 ----~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~------~~~l~~L~~~l~~~~~~~~~~~i~wiL---G 447 (822)
...-+.+++.++.+. ...+++.+.-.+-.|..-.|+.. ...+..+.+-+.|+ |.....+.|-+ .
T Consensus 400 Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De--Prva~N~CWAf~~La 476 (859)
T KOG1241|consen 400 LTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE--PRVASNVCWAFISLA 476 (859)
T ss_pred hhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC--chHHHHHHHHHHHHH
Confidence 223455666666653 33355655556777777666532 12344444444443 33333334432 2
Q ss_pred CCCCCC------CChH-HHHHHHHhhcc-------CCCHHHHHHHHHHHHHHhhccc-cchHHHHHH
Q 003409 448 TEGPKT------SDPS-KYIRYIYNRVH-------LENATVRAAAVSTLAKFGAMVD-ALKPRVFVL 499 (822)
Q Consensus 448 Ey~~~~------~~~~-~~i~~i~~~~~-------~e~~~vr~~~ltal~K~~~~~~-~~~~~i~~l 499 (822)
|-++.. .+|. .++..|.+.++ ......|.++..||+.+...+| +..+.+..+
T Consensus 477 ea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~ 543 (859)
T KOG1241|consen 477 EAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKL 543 (859)
T ss_pred HHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 211110 1122 25555554432 2345789999999988888776 455544433
No 141
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.99 E-value=99 Score=33.85 Aligned_cols=225 Identities=16% Similarity=0.140 Sum_probs=116.4
Q ss_pred hccCChhhHHHHHHHHhhccCCChHhHh-hHHHHHHHHhc--CCCchhHHHHHHhhccCcCCC-Cch--hhHHHHHHHHh
Q 003409 263 LRHKAEMVIFEAARAITELNGVTNRELT-PAITVLQLFLS--SSKPVLRFAAVRTLNKSLISD-QNR--SIATLAITTLL 336 (822)
Q Consensus 263 L~~~~~aV~~ea~~~i~~l~~~~~~~~~-~a~~~L~~~l~--s~~~n~ry~aL~~l~~~lL~d-~d~--sIr~~aL~lL~ 336 (822)
-.+.+.++++.+..++..+....+.++. .+.+++..+|. +.+..+-.++++.+.+.|+.. -++ -.....+.+++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~ 195 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELIL 195 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHH
Confidence 4566788999999999998765556653 35555555554 455567777777766655532 222 24566777777
Q ss_pred ccCCcchHHHHHHHHHHhhh--hcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHh
Q 003409 337 KTGNESSVDRLMKQITNFMS--DIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRD 414 (822)
Q Consensus 337 ~l~ne~Nv~~Iv~eL~~y~~--~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~ 414 (822)
...|...-.+.++|+..-++ -.|++||...=.+=+ =|..+.. ...+..|.+.+.-.-+..+-.+....+..+.-+
T Consensus 196 ~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~-hAr~ia~--e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 196 QVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHG-HARTIAK--EGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhH-HHHHHHH--hhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 66666666678888775432 224445433211110 0111110 112333444443211122223333444444443
Q ss_pred CCchHH----HHHHHHHHHhhcCCchhHH---HhhheecCCCCCCCCChH--------HHHHHHHhhccCCCHHHHHHHH
Q 003409 415 IPDAKE----NGLLHLCEFIEDCEFTYLS---TQILHFLGTEGPKTSDPS--------KYIRYIYNRVHLENATVRAAAV 479 (822)
Q Consensus 415 ~p~~~~----~~l~~L~~~l~~~~~~~~~---~~i~wiLGEy~~~~~~~~--------~~i~~i~~~~~~e~~~vr~~~l 479 (822)
+.=+++ ..+..|.+++.|+..++.+ +.++-+|..-+..-+.-. +.|-.+..+ ...+|.|-...+
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~-h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALR-HSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHH-cCCChHHHHHHH
Confidence 322221 3577888888888765443 334444443322211111 112222233 245677777777
Q ss_pred HHHHHHhhcccc
Q 003409 480 STLAKFGAMVDA 491 (822)
Q Consensus 480 tal~K~~~~~~~ 491 (822)
-++.-++.|.|+
T Consensus 352 a~i~~l~LR~pd 363 (461)
T KOG4199|consen 352 AIISILCLRSPD 363 (461)
T ss_pred HHHHHHHhcCcc
Confidence 777777777764
No 142
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=68.98 E-value=17 Score=41.15 Aligned_cols=126 Identities=18% Similarity=0.293 Sum_probs=79.0
Q ss_pred cCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCch--hh--------------------
Q 003409 81 SRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDG--TL-------------------- 138 (822)
Q Consensus 81 s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~--~~-------------------- 138 (822)
..+--.||..|=||..+.+..++.- .-.-+.--|.|+|+--|++||..++.|.-. .+
T Consensus 23 ~~~~~~~~~~ygyw~~~~pd~~~~g-~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a 101 (728)
T KOG4535|consen 23 TIKSIEKKVLYGYWSAFIPDTPELG-SPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIA 101 (728)
T ss_pred HHhhhhhhhhhceeeeecCCCCCCC-CceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHH
Confidence 3455679999999988887643310 000011247899999999999999875311 11
Q ss_pred --HHHHHHHHHHhhc-CCCHHHHHHHHHHHHhhcccCh------hHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003409 139 --LTQIERYLKQAIV-DKNPVVASAALVSGIHLLQTTP------EIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQ 207 (822)
Q Consensus 139 --~~~l~~~v~~~l~-d~~p~VRk~A~la~~~l~~~~p------e~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~ 207 (822)
+..+.+.+.-.+. ..+|-|---.+-|+..|....| ..+.++.+.++..+..+|+.|..+++.++..|..
T Consensus 102 ~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~ 179 (728)
T KOG4535|consen 102 CSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVS 179 (728)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHh
Confidence 1112222222222 2344444455566666666555 2345788889999999999999999988876654
No 143
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=68.37 E-value=9.9 Score=35.40 Aligned_cols=48 Identities=19% Similarity=0.103 Sum_probs=41.7
Q ss_pred chhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHH
Q 003409 135 DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNE 182 (822)
Q Consensus 135 ~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~ 182 (822)
++.-+..+..++.+-|.+++|+|+.||+-.+-+++...++.+.+|+.+
T Consensus 32 s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~ 79 (122)
T cd03572 32 SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQR 79 (122)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 556788899999999999999999999999999998888777777754
No 144
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=68.20 E-value=3.3 Score=38.24 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCChHHHHHH------HHhhccCCCHHHHHHHHHHHHHHhh
Q 003409 420 ENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRY------IYNRVHLENATVRAAAVSTLAKFGA 487 (822)
Q Consensus 420 ~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~~~~i~~------i~~~~~~e~~~vr~~~ltal~K~~~ 487 (822)
-.+++.|++.++....+...+.+++=||||....++....+.. |.+-...++++||-.+|.|+-|+-.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3577888888876667788888889999988777666555532 2333345799999999999998754
No 145
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=68.00 E-value=3.3e+02 Score=34.44 Aligned_cols=72 Identities=15% Similarity=0.091 Sum_probs=50.2
Q ss_pred chhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccCh-hHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHH
Q 003409 135 DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTP-EIVKRWSNEVQEAVQSRA-ALVQFHALALLHQIR 206 (822)
Q Consensus 135 ~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~p-e~v~~~~~~l~~ll~d~~-~~V~~~al~lL~~i~ 206 (822)
.|+++|-+...+..++.|++..||.+||-++.|+....| +++..-+..+.++++--+ +.+--.|+..|-|+.
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA 408 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELA 408 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHH
Confidence 357888999999999999999999999999999987665 555566665555554322 333333444444443
No 146
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=67.87 E-value=6.9 Score=29.07 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHH
Q 003409 141 QIERYLKQAIVDKNPVVASAALV 163 (822)
Q Consensus 141 ~l~~~v~~~l~d~~p~VRk~A~l 163 (822)
.+...|.+.+.|++|.||++|+-
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHH
Confidence 68888999999999999999874
No 147
>COG1470 Predicted membrane protein [Function unknown]
Probab=67.34 E-value=20 Score=40.55 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=46.7
Q ss_pred eEEEEEEeecCCCcccceeEEEEEecCCCCCceEEE-eccCCCCCCCCCceEEEEEeeCCC
Q 003409 602 HVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVA-SKPLRSLPYDSPGQIFGAFEKPEG 661 (822)
Q Consensus 602 ~ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~-~ip~~~L~~~~~~~~~v~~~~~~~ 661 (822)
...+...|.|+. +.+|+|+.+.+....+ |++.. .-.++.|+|++...+-+.++.|.+
T Consensus 398 e~~i~i~I~NsG-na~LtdIkl~v~~Pqg--Wei~Vd~~~I~sL~pge~~tV~ltI~vP~~ 455 (513)
T COG1470 398 EKTIRISIENSG-NAPLTDIKLTVNGPQG--WEIEVDESTIPSLEPGESKTVSLTITVPED 455 (513)
T ss_pred cceEEEEEEecC-CCccceeeEEecCCcc--ceEEECcccccccCCCCcceEEEEEEcCCC
Confidence 678888899999 5689999999986555 87666 346889999999999999888764
No 148
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.52 E-value=94 Score=38.04 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=49.7
Q ss_pred hcCCCCHHHHHHHHHHhcCCCc------hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH
Q 003409 114 DMTSKTDMYRANAIRVLCRITD------GTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK 177 (822)
Q Consensus 114 Dl~~~n~~vr~lALr~l~~I~~------~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~ 177 (822)
-+.|+-+-+||-||+.|..+.. ..+-+-+....+..+.|.++||-=+|+-++.-|+..+|+-+-
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il 804 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDIL 804 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhH
Confidence 3457778899999999998643 345566888889999999999999999877766666776543
No 149
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=66.34 E-value=2.6e+02 Score=34.51 Aligned_cols=234 Identities=13% Similarity=0.109 Sum_probs=116.8
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHhhcccCh--hHHHHHHHHHHHHhcCCChhHHHHHHHHH---HHHHhcChH--HH
Q 003409 141 QIERYLKQAIVDKNPVVASAALVSGIHLLQTTP--EIVKRWSNEVQEAVQSRAALVQFHALALL---HQIRQNDRL--AV 213 (822)
Q Consensus 141 ~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~p--e~v~~~~~~l~~ll~d~~~~V~~~al~lL---~~i~~~d~~--~i 213 (822)
.+.+.++.++.|.++.||+..+..+.-+.+..| ..+..+++.....+.|.++.|..+..-.+ -+....-+. .-
T Consensus 398 ~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s 477 (759)
T KOG0211|consen 398 SILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVS 477 (759)
T ss_pred hhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhh
Confidence 456999999999999999999988877665554 23444666666667777888887776322 221111111 11
Q ss_pred HHHHHHhcCCCCCChhHHH-HHHHHHHhhhhcccCC-CCCchhhHHHHHHHhccCChhhHHHHHHHHhhccC--CChHhH
Q 003409 214 SKLVTSLTRGTVRSPLAQC-LLIRYTTQVIREAATT-QTGDRPFYDFLESCLRHKAEMVIFEAARAITELNG--VTNREL 289 (822)
Q Consensus 214 ~~Li~~l~~~~~~~~w~~v-~llr~l~~~~~~~~~d-~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~--~~~~~~ 289 (822)
..+++.+..-.....|... .+++++.....+. . +-..+.+-+.+..++.+.-.+|.=.|++.+..+.. ...-..
T Consensus 478 ~slLp~i~el~~d~~wRvr~ail~~ip~la~q~--~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~ 555 (759)
T KOG0211|consen 478 NSLLPAIVELAEDLLWRVRLAILEYIPQLALQL--GVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWAR 555 (759)
T ss_pred hhhhhhhhhhccchhHHHHHHHHHHHHHHHHhh--hhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhH
Confidence 2233322200022256553 4556555432221 0 00112234444455544445555555555544320 011111
Q ss_pred hhHHHHHHHHhc-CCCch--hHHHHHHhhcc-------------------CcCCCCchhhHHHHHHHHh---ccCCcchH
Q 003409 290 TPAITVLQLFLS-SSKPV--LRFAAVRTLNK-------------------SLISDQNRSIATLAITTLL---KTGNESSV 344 (822)
Q Consensus 290 ~~a~~~L~~~l~-s~~~n--~ry~aL~~l~~-------------------~lL~d~d~sIr~~aL~lL~---~l~ne~Nv 344 (822)
.. .+..+|. ..++| .|...+..++. .+..|+...||-.++..|. ++-..+-.
T Consensus 556 ~~---~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~ 632 (759)
T KOG0211|consen 556 LE---EIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVR 632 (759)
T ss_pred HH---hhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHH
Confidence 11 1122222 11223 24333333321 4558888888866666554 44566667
Q ss_pred HHHHHHHHHhhhh-c--CHHHHHHHHHHHHHHHHhCcc
Q 003409 345 DRLMKQITNFMSD-I--ADEFKIVVVEAIRSLCLKFPL 379 (822)
Q Consensus 345 ~~Iv~eL~~y~~~-~--~~~~k~~~v~aI~~la~k~~~ 379 (822)
+.-+..+..++.. . |-.|+.........++.++..
T Consensus 633 ~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~~ 670 (759)
T KOG0211|consen 633 DEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLESS 670 (759)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhhh
Confidence 7777777766642 2 333444444444455555543
No 150
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=64.68 E-value=3.6e+02 Score=33.56 Aligned_cols=350 Identities=15% Similarity=0.129 Sum_probs=0.0
Q ss_pred cCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcc-cChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcC
Q 003409 131 CRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQ-TTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQND 209 (822)
Q Consensus 131 ~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~-~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d 209 (822)
+.+.+.+.-.-+-.-+..++.+++..+|+.++.|+--+.. ++|+.-++.++.+.+++.+.|..-.-.|+.+|.++...
T Consensus 80 ~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~e- 158 (1005)
T KOG2274|consen 80 PLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDE- 158 (1005)
T ss_pred CCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHH-
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhH--HHHHHHhccCChhhHHHHHHHHhhccCCChH
Q 003409 210 RLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFY--DFLESCLRHKAEMVIFEAARAITELNGVTNR 287 (822)
Q Consensus 210 ~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~--~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~ 287 (822)
-+..+.. .-.|...-...|...-.... +...+-... .....++.-..+.=-+.+.+.-.-+ .+
T Consensus 159 -----v~~ee~~---~~~~~~l~~m~~~f~~~~~~---s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~----s~ 223 (1005)
T KOG2274|consen 159 -----VDVEEMF---FVGPVSLAEMYRIFALTIVY---SIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFL----SQ 223 (1005)
T ss_pred -----HHHHHHh---cccccchhhhhhhhhhcccc---chhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH----HH
Q ss_pred hHhhHHHHHHHHhcCCCch---hHHHHHHhhcc-------------------------------------------CcCC
Q 003409 288 ELTPAITVLQLFLSSSKPV---LRFAAVRTLNK-------------------------------------------SLIS 321 (822)
Q Consensus 288 ~~~~a~~~L~~~l~s~~~n---~ry~aL~~l~~-------------------------------------------~lL~ 321 (822)
.+......+...++-++.+ .|-..++.++. .-..
T Consensus 224 ~l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~ 303 (1005)
T KOG2274|consen 224 ILNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARY 303 (1005)
T ss_pred HHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCccccc
Q ss_pred CCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhh----------hcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 003409 322 DQNRSIATLAITTLLKTGNESSVDRLMKQITNFMS----------DIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNI 391 (822)
Q Consensus 322 d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~----------~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~l 391 (822)
|+| .-..+++.++-++.+|++ .+....+.-+...+.-+-...-.-..|..|+---.
T Consensus 304 dsd--------------~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV 369 (1005)
T KOG2274|consen 304 DSD--------------PEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFV 369 (1005)
T ss_pred CCc--------------hhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhh
Q ss_pred HhhcCCcchHHHHHHHHHHHHHhCCc--------------------------------------------------hHHH
Q 003409 392 LREEGGFEYKKAIVDSIVILIRDIPD--------------------------------------------------AKEN 421 (822)
Q Consensus 392 L~~~g~~~v~~~iv~~i~~iv~~~p~--------------------------------------------------~~~~ 421 (822)
=...++|.....+......++...++ ....
T Consensus 370 ~dEd~~~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~dd~l~~ 449 (1005)
T KOG2274|consen 370 ADEDDGYTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDANDDKLIE 449 (1005)
T ss_pred ccCCCCchhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcchHHHHHH
Q ss_pred HHHHHHHHhhcCCchhHHHhhheecCCCCCCCCChHHHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhhccc--cchH
Q 003409 422 GLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVH-----LENATVRAAAVSTLAKFGAMVD--ALKP 494 (822)
Q Consensus 422 ~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i~~~~~-----~e~~~vr~~~ltal~K~~~~~~--~~~~ 494 (822)
.+..+-.-|..-+.|.+..+++|.+|.|.......+..+..+.+... ...+.+|..++.++.-++...+ +..|
T Consensus 450 l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p 529 (1005)
T KOG2274|consen 450 LTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQP 529 (1005)
T ss_pred HHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccch
Q ss_pred HHHHHHHHHhcCCCCC
Q 003409 495 RVFVLLRRCLYDGDDE 510 (822)
Q Consensus 495 ~i~~ll~~~~~d~d~E 510 (822)
+|+..+-.+..+..+|
T Consensus 530 ~ild~L~qlas~~s~e 545 (1005)
T KOG2274|consen 530 MILDGLLQLASKSSDE 545 (1005)
T ss_pred HHHHHHHHHcccccHH
No 151
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=64.28 E-value=1.6e+02 Score=29.48 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=68.7
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhc-CCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHh
Q 003409 185 EAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLT-RGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCL 263 (822)
Q Consensus 185 ~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~-~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L 263 (822)
-++.|.++.|...|+.++..+-..- +.+-....+.. ....+.|+..- +=+.+ ..+.+.|...|
T Consensus 47 ~il~Dp~~kvR~aA~~~l~~lL~gs-k~~L~~Ae~~~~~~~sFtslS~t-La~~i--------------~~lH~~Ll~~L 110 (182)
T PF13251_consen 47 CILKDPSPKVRAAAASALAALLEGS-KPFLAQAEESKGPSGSFTSLSST-LASMI--------------MELHRGLLLAL 110 (182)
T ss_pred HHHcCCchhHHHHHHHHHHHHHHcc-HHHHHHHHhcCCCCCCcccHHHH-HHHHH--------------HHHHHHHHHHH
Confidence 4566788888888887777665542 33333333332 11244455432 11111 12234444455
Q ss_pred cc-CChhhHHHHHHHHhhccCC------ChHhHhhHHHHHHHHhcCCCchhHHHHHHhh
Q 003409 264 RH-KAEMVIFEAARAITELNGV------TNRELTPAITVLQLFLSSSKPVLRFAAVRTL 315 (822)
Q Consensus 264 ~~-~~~aV~~ea~~~i~~l~~~------~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l 315 (822)
++ ++..++-+..|++-.+-.+ +..++...+..+..++.+.|++++-+++-.+
T Consensus 111 ~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~ 169 (182)
T PF13251_consen 111 QAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCL 169 (182)
T ss_pred hcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 44 5667777777777665322 3567888899999999999999988876554
No 152
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=63.07 E-value=65 Score=38.66 Aligned_cols=134 Identities=14% Similarity=0.226 Sum_probs=88.9
Q ss_pred HHHHHHHhcCCCchhHHHHHHhhcc------------C----cCCCCchhhHHHHHHHHhccC--CcchHHHHHHHHHHh
Q 003409 293 ITVLQLFLSSSKPVLRFAAVRTLNK------------S----LISDQNRSIATLAITTLLKTG--NESSVDRLMKQITNF 354 (822)
Q Consensus 293 ~~~L~~~l~s~~~n~ry~aL~~l~~------------~----lL~d~d~sIr~~aL~lL~~l~--ne~Nv~~Iv~eL~~y 354 (822)
-..+..++...||-+||.++-++.- . .++|.|-.+||-|..-|--+| +.+.+-.+|.-|.+
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLse- 599 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSE- 599 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhh-
Confidence 3456678899999999999877642 2 258999999998877664443 45566677766664
Q ss_pred hhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHh-CCch---HHHHHHHHHHHh
Q 003409 355 MSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRD-IPDA---KENGLLHLCEFI 430 (822)
Q Consensus 355 ~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~-~p~~---~~~~l~~L~~~l 430 (822)
+-++..|--+.-++|..|.- +-...+++.|-.+..+.-+| |...+...+-.|+.+ +|.+ ...+.+++.+.|
T Consensus 600 --s~N~HVRyGaA~ALGIaCAG--tG~~eAi~lLepl~~D~~~f-VRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI 674 (929)
T KOG2062|consen 600 --SYNPHVRYGAAMALGIACAG--TGLKEAINLLEPLTSDPVDF-VRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVI 674 (929)
T ss_pred --hcChhhhhhHHHHHhhhhcC--CCcHHHHHHHhhhhcChHHH-HHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHh
Confidence 23677888888899988864 34567888888888876666 555555555544443 3332 223444444555
Q ss_pred hc
Q 003409 431 ED 432 (822)
Q Consensus 431 ~~ 432 (822)
.+
T Consensus 675 ~d 676 (929)
T KOG2062|consen 675 ND 676 (929)
T ss_pred hh
Confidence 43
No 153
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=61.98 E-value=23 Score=42.08 Aligned_cols=35 Identities=23% Similarity=0.133 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcc
Q 003409 136 GTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQ 170 (822)
Q Consensus 136 ~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~ 170 (822)
+.+-..+.+.+..++.|++|.+|-.++.++..|.+
T Consensus 364 ~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 364 QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555555555554443
No 154
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=61.52 E-value=1.8e+02 Score=30.64 Aligned_cols=118 Identities=21% Similarity=0.205 Sum_probs=71.2
Q ss_pred ChhHHH---HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCC-----CCChhHHHHHHHHHHhhhh
Q 003409 172 TPEIVK---RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGT-----VRSPLAQCLLIRYTTQVIR 243 (822)
Q Consensus 172 ~pe~v~---~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~-----~~~~w~~v~llr~l~~~~~ 243 (822)
.|++++ +..+...+.+.+.+....++|+.+|-+.+.. .++..++.-+..+. ...-|..=.+-|++.....
T Consensus 33 ~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re~--~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~ 110 (249)
T PF06685_consen 33 TPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFREE--RALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD 110 (249)
T ss_pred hHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhhh--hhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC
Confidence 455543 4555556677777667678999999988766 66666666443110 0111333334455544332
Q ss_pred cccCCCCCchhhHHHHHHHhccC--ChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhc
Q 003409 244 EAATTQTGDRPFYDFLESCLRHK--AEMVIFEAARAITELNGVTNRELTPAITVLQLFLS 301 (822)
Q Consensus 244 ~~~~d~~~~~~l~~~l~~~L~~~--~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~ 301 (822)
. + .+.|..++.+. +.-|...|++++..+....+..+..++..++.++.
T Consensus 111 G---~-------~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~ 160 (249)
T PF06685_consen 111 G---D-------IEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLN 160 (249)
T ss_pred C---C-------HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 2 1 35566666654 35688888888888764445567777777777765
No 155
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=59.81 E-value=2.2e+02 Score=29.60 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHH-hhcCCcchHHHHHHHHHHHHH
Q 003409 364 IVVVEAIRSLCLKFPLKYRSLMNFLSNIL-REEGGFEYKKAIVDSIVILIR 413 (822)
Q Consensus 364 ~~~v~aI~~la~k~~~~~~~~v~~l~~lL-~~~g~~~v~~~iv~~i~~iv~ 413 (822)
.....+|+.+|...|.....++..+..+| ...++ ....-.++.+..+..
T Consensus 102 i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~-~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 102 ISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDE-VAQALALEALAPLCE 151 (234)
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHH
Confidence 33445788888888887777888888888 44333 355556666666653
No 156
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=59.47 E-value=33 Score=34.31 Aligned_cols=76 Identities=18% Similarity=0.107 Sum_probs=62.3
Q ss_pred hHHhhcCCCCHHHHHHHHHHhcCCCch-hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q 003409 110 SLMKDMTSKTDMYRANAIRVLCRITDG-TLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQE 185 (822)
Q Consensus 110 sl~kDl~~~n~~vr~lALr~l~~I~~~-~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ 185 (822)
.+.+=+.|+|+..|-.|+-++...... .-.+.+...+..++.|.+.||||+..-++-.++..+|+.+.+|+.+...
T Consensus 109 ~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~~~ 185 (197)
T cd06561 109 LLEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKNGL 185 (197)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 444555789998888887777664444 5788888889999999999999999999999999999999999987644
No 157
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.06 E-value=69 Score=39.99 Aligned_cols=140 Identities=17% Similarity=0.109 Sum_probs=89.7
Q ss_pred chhhhhhhhhhhcccCCccchhHHH-HHHHHhCCC-Ccchhhhhh-------hHHhhcCCCCHHHHHHHHHHhcCCCchh
Q 003409 67 EATEVFFAVTKLFQSRDIGLRRMVY-LMIKELSPS-ADEVIIVTS-------SLMKDMTSKTDMYRANAIRVLCRITDGT 137 (822)
Q Consensus 67 e~s~lf~~v~kl~~s~d~~lKrl~Y-L~l~~~~~~-~~~~lLviN-------sl~kDl~~~n~~vr~lALr~l~~I~~~~ 137 (822)
-...+|+.|+||+||+-.++|.+.- +-.+-++-. +-.+-|+-- ++..|-+.-++.-|++|-=.|+.|...=
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 3457999999999999999998654 444455432 222222111 1111112335688999987777764321
Q ss_pred -------hHHHHHHHHHHhhcC-CCHHHHHHHHHHHHhhcccChhH----HH-HHHHHHHHHhcCCChhHHHHHHHHHHH
Q 003409 138 -------LLTQIERYLKQAIVD-KNPVVASAALVSGIHLLQTTPEI----VK-RWSNEVQEAVQSRAALVQFHALALLHQ 204 (822)
Q Consensus 138 -------~~~~l~~~v~~~l~d-~~p~VRk~A~la~~~l~~~~pe~----v~-~~~~~l~~ll~d~~~~V~~~al~lL~~ 204 (822)
+-..++.--...++| +.|..|.-.++|+-+|...+++. ++ .-.+++..+|.|.-|-|-.+|+-+|-.
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgt 668 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGT 668 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 111244444455566 57999999999999999988764 12 244667778888889998888766654
Q ss_pred HH
Q 003409 205 IR 206 (822)
Q Consensus 205 i~ 206 (822)
+-
T Consensus 669 fl 670 (1387)
T KOG1517|consen 669 FL 670 (1387)
T ss_pred Hh
Confidence 43
No 158
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=56.65 E-value=3.9e+02 Score=31.39 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=48.4
Q ss_pred HHHHhCCchHHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCC-CChHHHHHHHHhhcc
Q 003409 410 ILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKT-SDPSKYIRYIYNRVH 468 (822)
Q Consensus 410 ~iv~~~p~~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~-~~~~~~i~~i~~~~~ 468 (822)
-|.++.|+.-+..+..||..+.|.++..+...|+-.|..|++.. ....+.++.+-.++.
T Consensus 225 LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~pv~l~~~~E~l~e~~~~~p 284 (851)
T KOG3723|consen 225 LIKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEPVALNSFLEMLKEIGERFP 284 (851)
T ss_pred HHHhccHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCccchhhHHHHHHHHHHhCC
Confidence 45567889999999999999999999999999999999999864 456677777766543
No 159
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=56.34 E-value=3.3e+02 Score=30.54 Aligned_cols=217 Identities=15% Similarity=0.178 Sum_probs=109.8
Q ss_pred ChHhHhhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhh--------
Q 003409 285 TNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMS-------- 356 (822)
Q Consensus 285 ~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~-------- 356 (822)
..+....|...+.+|... =|.+.-.|+.+- -++..|.|.+||+.|+.=|-..|..++.-++.+.|.+.+.
T Consensus 37 ~~k~k~lasq~ip~~fk~-fp~la~~a~da~-~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~sl~~Lf 114 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKH-FPSLADEAIDAQ-LDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKASLTGLF 114 (460)
T ss_pred chHHHHHHHHHHHHHHhh-CchhhhHHHHhh-hccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHHHHHHHH
Confidence 345555666666666542 122222222210 0788999999999999999999999988877765555432
Q ss_pred ----hcCHHHHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchH----HHH
Q 003409 357 ----DIADEFKIVVVEAIRSLCLKFP------LKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAK----ENG 422 (822)
Q Consensus 357 ----~~~~~~k~~~v~aI~~la~k~~------~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~----~~~ 422 (822)
..|++.|..++.-|+.=..-.+ +.-..+++-+-+.|.+ |..+-...+.+++......+ +.=
T Consensus 115 ~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~d-----Vtgeef~lfm~~L~~lk~~~~k~~~a~ 189 (460)
T KOG2213|consen 115 GQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALED-----VTGEEFTLFMDILASLKSLQTKAGEAR 189 (460)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhhhcccCCCCHHH
Confidence 2245555555444432111111 1112233333333332 22222344445554332111 112
Q ss_pred HHHHHHHhhcCC--------chhHHHh---hheecCCCCCCCCChHHHHHHHHhhccC-----CCHHHHHHHHHHHHHHh
Q 003409 423 LLHLCEFIEDCE--------FTYLSTQ---ILHFLGTEGPKTSDPSKYIRYIYNRVHL-----ENATVRAAAVSTLAKFG 486 (822)
Q Consensus 423 l~~L~~~l~~~~--------~~~~~~~---i~wiLGEy~~~~~~~~~~i~~i~~~~~~-----e~~~vr~~~ltal~K~~ 486 (822)
+..|.+.+++.. .++-.-+ ++-.---|-......++++.++..+++. .....+.-+|-+++-+.
T Consensus 190 lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMs 269 (460)
T KOG2213|consen 190 LQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMS 269 (460)
T ss_pred HHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhC
Confidence 344555444221 1111111 1111111211223345677666655432 23577888888888876
Q ss_pred hcc-----ccchHHHHHHHHHHhcCCC
Q 003409 487 AMV-----DALKPRVFVLLRRCLYDGD 508 (822)
Q Consensus 487 ~~~-----~~~~~~i~~ll~~~~~d~d 508 (822)
.-. .++-++|..+|+.++--.|
T Consensus 270 s~ttaq~a~q~Lpsi~elLk~yMpa~k 296 (460)
T KOG2213|consen 270 SYTTAQAARQMLPSIVELLKEYMPAPK 296 (460)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcccCC
Confidence 533 3456788899988865443
No 160
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=56.06 E-value=4.1e+02 Score=31.48 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhh
Q 003409 136 GTLLTQIERYLKQAIVDKNPVVASAALVSGIHL 168 (822)
Q Consensus 136 ~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l 168 (822)
..++..+..-+.+-+-|+.|.||+-|+.|+.++
T Consensus 127 e~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~ 159 (885)
T COG5218 127 EVLANGLLEKLSERLFDREKAVRREAVKVLCYY 159 (885)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 345555555666666677777777777776654
No 161
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=55.97 E-value=2e+02 Score=28.77 Aligned_cols=132 Identities=12% Similarity=0.160 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHH--
Q 003409 344 VDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKEN-- 421 (822)
Q Consensus 344 v~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~-- 421 (822)
+++-++++++.....+...|..+++-|..+...==-....|+.+++.+..+... .+...+...+..+.+++|..-..
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~-~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNP-SIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCCh-HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345566777766666777887777766665543222335788889888776433 37777777777777777765321
Q ss_pred --HHHHHHHHhhcCCchhHHHhhheecCCCC-CCCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcc
Q 003409 422 --GLLHLCEFIEDCEFTYLSTQILHFLGTEG-PKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMV 489 (822)
Q Consensus 422 --~l~~L~~~l~~~~~~~~~~~i~wiLGEy~-~~~~~~~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~ 489 (822)
++..-.++-..+ -++.. .....+...+..+|.-+. .+...|...+.++.|.+...
T Consensus 85 ~~gi~~af~~~~~l------------~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~~~ 142 (187)
T PF12830_consen 85 SEGIRLAFDYQRRL------------SSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFDFD 142 (187)
T ss_pred HHHHHHHHHHHHHh------------cCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHHhh
Confidence 222222222211 11110 000115566777776544 66777888888888876643
No 162
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=55.78 E-value=27 Score=23.70 Aligned_cols=30 Identities=13% Similarity=0.308 Sum_probs=22.3
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHh
Q 003409 347 LMKQITNFMSDIADEFKIVVVEAIRSLCLK 376 (822)
Q Consensus 347 Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k 376 (822)
|+.-+.+.+.|.+++.|..++.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 455667777788888888888888888753
No 163
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.61 E-value=5.4e+02 Score=32.40 Aligned_cols=90 Identities=9% Similarity=0.206 Sum_probs=53.8
Q ss_pred CccchhHHHHHHHHhCCC---------------CcchhhhhhhHHhhcCCCCHHHHHH---HHHHhcCCCchhhHHHHHH
Q 003409 83 DIGLRRMVYLMIKELSPS---------------ADEVIIVTSSLMKDMTSKTDMYRAN---AIRVLCRITDGTLLTQIER 144 (822)
Q Consensus 83 d~~lKrl~YL~l~~~~~~---------------~~~~lLviNsl~kDl~~~n~~vr~l---ALr~l~~I~~~~~~~~l~~ 144 (822)
+...|+-+=+|+++.... .++=-++-+.|..=+.+.++.+|.. -|+.+=+=.-|+--+.+.+
T Consensus 51 ~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d 130 (1010)
T KOG1991|consen 51 PLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLD 130 (1010)
T ss_pred chhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHH
Confidence 345677777777655431 1222344455555555556666633 2333333334444577888
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhhcccC
Q 003409 145 YLKQAIVDKNPVVASAALVSGIHLLQTT 172 (822)
Q Consensus 145 ~v~~~l~d~~p~VRk~A~la~~~l~~~~ 172 (822)
.++..|.+.+...-=.|++|+++|++.+
T Consensus 131 ~i~~~Lqs~~~~~vy~aLl~l~qL~k~y 158 (1010)
T KOG1991|consen 131 KIKNLLQSQDANHVYGALLCLYQLFKTY 158 (1010)
T ss_pred HHHHHhcCcchhhHHHHHHHHHHHHHHH
Confidence 8888888877666667888888776543
No 164
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=54.02 E-value=36 Score=33.45 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=66.7
Q ss_pred chhhhhhhhhhhcccCCccchhHHHHHHHHhCCCC-cchh-----hhhhhHHhhcCCC-CHHHHHHHHHHhcCCC-----
Q 003409 67 EATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSA-DEVI-----IVTSSLMKDMTSK-TDMYRANAIRVLCRIT----- 134 (822)
Q Consensus 67 e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~-~~~l-----LviNsl~kDl~~~-n~~vr~lALr~l~~I~----- 134 (822)
+...+..-+.++++|++..-|-.|.-.+....+.. .+.+ --...+.+=|+.+ .+.++..|++++..|-
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34445555666778888888888877776665553 3332 1112233333333 3467778888887652
Q ss_pred chhhHH--------HHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q 003409 135 DGTLLT--------QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEA 186 (822)
Q Consensus 135 ~~~~~~--------~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~l 186 (822)
-|++.+ .+...+.+.+.+ +++...|+-++..+.+.+|-..+.+.+++..+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~ 159 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESA 159 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHH
Confidence 222221 122222333332 56777777777777777777777666666554
No 165
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=53.69 E-value=2.8e+02 Score=28.86 Aligned_cols=180 Identities=16% Similarity=0.176 Sum_probs=92.0
Q ss_pred CCCchhhHHHHHHHHhccCCcc--hHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhh----
Q 003409 321 SDQNRSIATLAITTLLKTGNES--SVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILRE---- 394 (822)
Q Consensus 321 ~d~d~sIr~~aL~lL~~l~ne~--Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~---- 394 (822)
+..+.......|..|-.+|..+ ++..+++-|..-......+.+..+++-+..+-.+-+..+ .+|-.+|..
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----~~L~~~L~~~~~r 86 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----PFLQPLLLLLILR 86 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----HHHHHHHHHHHhh
Confidence 4455666677777777666555 333344444444444344444455555555555433322 233222221
Q ss_pred ------cCC--cchHHHHHHHHHHHHHhCCchHHHHHHHHHHHh-hcCCchhHHHhhheecCCCCC-CCCChHHHHHHHH
Q 003409 395 ------EGG--FEYKKAIVDSIVILIRDIPDAKENGLLHLCEFI-EDCEFTYLSTQILHFLGTEGP-KTSDPSKYIRYIY 464 (822)
Q Consensus 395 ------~g~--~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l-~~~~~~~~~~~i~wiLGEy~~-~~~~~~~~i~~i~ 464 (822)
+++ ++..-.+...++++.+..|+.-...+..+..++ ++... .+.+.++-.+...++ ...+.....+.+-
T Consensus 87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~-~~~alale~l~~Lc~~~vvd~~s~w~vl~ 165 (234)
T PF12530_consen 87 IPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDE-VAQALALEALAPLCEAEVVDFYSAWKVLQ 165 (234)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 111 122222235788899999996566778888888 44332 222222222222222 2345556666666
Q ss_pred hhccCCCHHHHHHHHHHHHHHhhc----------cccchHHHHHHHHHHhcCCC
Q 003409 465 NRVHLENATVRAAAVSTLAKFGAM----------VDALKPRVFVLLRRCLYDGD 508 (822)
Q Consensus 465 ~~~~~e~~~vr~~~ltal~K~~~~----------~~~~~~~i~~ll~~~~~d~d 508 (822)
.++. -..|..++.++..++.- +++++..++.++=.+....|
T Consensus 166 ~~l~---~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 166 KKLS---LDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HhcC---CccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 6652 23344455544454432 24456667777777666554
No 166
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=53.02 E-value=3.1e+02 Score=29.18 Aligned_cols=75 Identities=17% Similarity=0.228 Sum_probs=45.1
Q ss_pred hHHhhcCCCCHHHHHHHHHHhcCCC--------chhhHHHHHHHHHHhhcCCCHHHH--HHHHHHHHhhcccChhHHHHH
Q 003409 110 SLMKDMTSKTDMYRANAIRVLCRIT--------DGTLLTQIERYLKQAIVDKNPVVA--SAALVSGIHLLQTTPEIVKRW 179 (822)
Q Consensus 110 sl~kDl~~~n~~vr~lALr~l~~I~--------~~~~~~~l~~~v~~~l~d~~p~VR--k~A~la~~~l~~~~pe~v~~~ 179 (822)
.+..-|+|.++..|+-|++.|+.+. .++-++.+.......+.|... +. =+|+.++.++-...++.+.+.
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~-~~~~l~gl~~L~~~~~~~~~~~~~i 81 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHAC-VQPALKGLLALVKMKNFSPESAVKI 81 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhh-HHHHHHHHHHHHhCcCCChhhHHHH
Confidence 4566789999999999999998642 334456677777777755332 21 233334444433445555555
Q ss_pred HHHHHH
Q 003409 180 SNEVQE 185 (822)
Q Consensus 180 ~~~l~~ 185 (822)
+..+.+
T Consensus 82 ~~~l~~ 87 (262)
T PF14500_consen 82 LRSLFQ 87 (262)
T ss_pred HHHHHH
Confidence 555443
No 167
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=53.00 E-value=31 Score=34.47 Aligned_cols=47 Identities=21% Similarity=0.202 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHH
Q 003409 137 TLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEV 183 (822)
Q Consensus 137 ~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l 183 (822)
.++++++.+++++|..++|-|..+++-++-+|...++-+=+.+++..
T Consensus 76 PvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyy 122 (183)
T PF10274_consen 76 PVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYY 122 (183)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 35677899999999999999999999999888655543333333333
No 168
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=52.82 E-value=69 Score=37.25 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=39.1
Q ss_pred hhHHHhhheecCCCCCCCCC--hHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHhc
Q 003409 436 TYLSTQILHFLGTEGPKTSD--PSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMV-DALKPRVFVLLRRCLY 505 (822)
Q Consensus 436 ~~~~~~i~wiLGEy~~~~~~--~~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~-~~~~~~i~~ll~~~~~ 505 (822)
+.+++..+..||=.|....+ ..+.+..+.. ..+..||..++.|++-+..++ |++.+++..+.+++..
T Consensus 600 ~hVR~g~AvaLGiacag~G~~~a~diL~~L~~---D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~ 669 (926)
T COG5116 600 FHVRAGVAVALGIACAGTGDKVATDILEALMY---DTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNR 669 (926)
T ss_pred hhhhhhhHHHhhhhhcCCccHHHHHHHHHHhh---CcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHH
Confidence 34444555555555443221 2233322221 235678999999988877776 6888877777666644
No 169
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=52.76 E-value=30 Score=32.05 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=20.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 003409 142 IERYLKQAIVDKNPVVASAALVSGIHLL 169 (822)
Q Consensus 142 l~~~v~~~l~d~~p~VRk~A~la~~~l~ 169 (822)
.-..|.+++.|.+|-||+.|+.|+-++.
T Consensus 87 ~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 87 AKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3455778888888888888888887765
No 170
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=52.64 E-value=1e+02 Score=36.04 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=20.9
Q ss_pred HHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHhCcc
Q 003409 346 RLMKQITNF-MSDIADEFKIVVVEAIRSLCLKFPL 379 (822)
Q Consensus 346 ~Iv~eL~~y-~~~~~~~~k~~~v~aI~~la~k~~~ 379 (822)
.+|+.|+.| +++.+++.|+.+|-|+|-+|.+-++
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~ 585 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD 585 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCcc
Confidence 455666666 5666666666666666666665443
No 171
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=52.03 E-value=21 Score=39.99 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=46.1
Q ss_pred hhhHHhhcC---CCCHHHHHHHHHHhcC---CCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 003409 108 TSSLMKDMT---SKTDMYRANAIRVLCR---ITDGTLLTQIERYLKQAIVDKNPVVASAALVSG 165 (822)
Q Consensus 108 iNsl~kDl~---~~n~~vr~lALr~l~~---I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~ 165 (822)
.+.+.-||+ +..|..||-|++++.. ..+++....+.+.+.++|.+++.-|+.-||.|+
T Consensus 307 ~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 307 SQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 455566776 6789999999999885 456788888999999999999999999999985
No 172
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=51.98 E-value=3.9e+02 Score=29.99 Aligned_cols=132 Identities=11% Similarity=0.106 Sum_probs=74.3
Q ss_pred ccCCccchhHHHHHHHHhCCC----C------cchhhhhhhHHhhcCC-------CCHHHHHHHHHHhcCCC--------
Q 003409 80 QSRDIGLRRMVYLMIKELSPS----A------DEVIIVTSSLMKDMTS-------KTDMYRANAIRVLCRIT-------- 134 (822)
Q Consensus 80 ~s~d~~lKrl~YL~l~~~~~~----~------~~~lLviNsl~kDl~~-------~n~~vr~lALr~l~~I~-------- 134 (822)
++.|..-|.=.|+.+...... + +.+-+.+..+++|+.+ .+.-+..-|||+++-+.
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~ 82 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVST 82 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhh
Confidence 456667777788887655431 1 2246788999999987 35577788999998642
Q ss_pred -chhhHHHHHHHHHHhhcCC-CHHHHHHHHHHHHhh---cc--cChhHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHH
Q 003409 135 -DGTLLTQIERYLKQAIVDK-NPVVASAALVSGIHL---LQ--TTPEIVKRWSNEVQEAVQ-SRAALVQFHALALLHQIR 206 (822)
Q Consensus 135 -~~~~~~~l~~~v~~~l~d~-~p~VRk~A~la~~~l---~~--~~pe~v~~~~~~l~~ll~-d~~~~V~~~al~lL~~i~ 206 (822)
+.+....++..-...+.++ .|-.--++++.+++. -+ ...+.+.+.+..+..+-+ =....+...++.++..+.
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll 162 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLL 162 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Confidence 3333333333334444443 332323333333321 11 235666666665555443 233456667777676666
Q ss_pred hcChH
Q 003409 207 QNDRL 211 (822)
Q Consensus 207 ~~d~~ 211 (822)
.+.|.
T Consensus 163 ~q~p~ 167 (372)
T PF12231_consen 163 SQFPQ 167 (372)
T ss_pred HHHHH
Confidence 55443
No 173
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.88 E-value=2.4e+02 Score=31.08 Aligned_cols=118 Identities=20% Similarity=0.200 Sum_probs=62.6
Q ss_pred HHhccCChhhHHHHHHHHhhccCCChHhHhh-----HHHHHHHHhcCCCchh-HHH---HHHhhcc--------------
Q 003409 261 SCLRHKAEMVIFEAARAITELNGVTNRELTP-----AITVLQLFLSSSKPVL-RFA---AVRTLNK-------------- 317 (822)
Q Consensus 261 ~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~-----a~~~L~~~l~s~~~n~-ry~---aL~~l~~-------------- 317 (822)
..+++++..+.--|+++|-....+.+..... +...|-..+++++++- |-. |+..+-|
T Consensus 131 ~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G 210 (342)
T KOG2160|consen 131 GYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG 210 (342)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC
Confidence 3666666667777777776664333333222 3334444445555443 222 3333322
Q ss_pred -----CcCCC--CchhhHHHHHHHHhccCCcchHHH-HHH------HHHHhhhhcCHHHHHHHHHHHHHHHHhCc
Q 003409 318 -----SLISD--QNRSIATLAITTLLKTGNESSVDR-LMK------QITNFMSDIADEFKIVVVEAIRSLCLKFP 378 (822)
Q Consensus 318 -----~lL~d--~d~sIr~~aL~lL~~l~ne~Nv~~-Iv~------eL~~y~~~~~~~~k~~~v~aI~~la~k~~ 378 (822)
+++.+ .+.-.+++++.++-.+..+...+. +++ -+..+....+.+++..++.++..+...++
T Consensus 211 ~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 211 YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 34445 456677888888877765544333 322 22334445566667777766666554443
No 174
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=51.57 E-value=2.8e+02 Score=33.31 Aligned_cols=83 Identities=14% Similarity=0.134 Sum_probs=41.9
Q ss_pred ccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcC---CCchhhHHHHHHHHHHhhcCCCHHHHHH
Q 003409 84 IGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCR---ITDGTLLTQIERYLKQAIVDKNPVVASA 160 (822)
Q Consensus 84 ~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~---I~~~~~~~~l~~~v~~~l~d~~p~VRk~ 160 (822)
...|++.+=++ -.+-..+=+.++.+-|.++--+..+..+ +|..|.. --+++++..+...++.-....++++|.+
T Consensus 378 ~~~r~~~lDal-~~aGT~~av~~i~~~I~~~~~~~~ea~~--~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~t 454 (618)
T PF01347_consen 378 EQARKIFLDAL-PQAGTNPAVKFIKDLIKSKKLTDDEAAQ--LLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRET 454 (618)
T ss_dssp HHHHHHHHHHH-HHH-SHHHHHHHHHHHHTT-S-HHHHHH--HHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHH
T ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHH
Confidence 34455544444 2232223344555666663333333333 3333332 3455677777777666556688999999
Q ss_pred HHHHHHhhc
Q 003409 161 ALVSGIHLL 169 (822)
Q Consensus 161 A~la~~~l~ 169 (822)
|++++..+.
T Consensus 455 a~L~~~~lv 463 (618)
T PF01347_consen 455 ALLSLGSLV 463 (618)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999876543
No 175
>PF05536 Neurochondrin: Neurochondrin
Probab=49.55 E-value=2.9e+02 Score=32.85 Aligned_cols=50 Identities=12% Similarity=0.225 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHhccCCcchH---HHHHH---HHHHhhhhcCH-HHHHHHHHHHHHHH
Q 003409 325 RSIATLAITTLLKTGNESSV---DRLMK---QITNFMSDIAD-EFKIVVVEAIRSLC 374 (822)
Q Consensus 325 ~sIr~~aL~lL~~l~ne~Nv---~~Iv~---eL~~y~~~~~~-~~k~~~v~aI~~la 374 (822)
..-+.+|+.+|...|...++ .+++. -|.+.+...++ +...++..-+..++
T Consensus 71 ~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia 127 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA 127 (543)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 45667777777777766554 23332 33333333344 44555555555555
No 176
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=48.80 E-value=1.5e+02 Score=32.36 Aligned_cols=120 Identities=17% Similarity=0.244 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCC-chHHHH
Q 003409 344 VDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIP-DAKENG 422 (822)
Q Consensus 344 v~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p-~~~~~~ 422 (822)
.+.=+.||..|+...+.+.- ...+++-+......+-.....+...++-+ -+.+...|..|+.+.| |.++..
T Consensus 14 ~~~Ql~elr~yl~~~eaeis-------~e~~~kgl~~~l~~ii~~c~v~~k~~ekd-le~vlnsi~sLi~~~~~e~~e~~ 85 (378)
T KOG2753|consen 14 FEEQLAELRAYLKKLEAEIS-------EEASEKGLEEDLLMIIEACDVLAKIPEKD-LECVLNSIVSLIKNAPPEKVEEM 85 (378)
T ss_pred HHHHHHHHHHHHhhcCcccc-------hhhhccCHHHHHHHHHHHhHHhhcCCcch-HHHHHHHHHHHHHhCCHHHhHHH
Confidence 34456788888876555433 12222322221111111112222223333 2556667777776654 556666
Q ss_pred HHHHHHHhhcCCc---hhHHHhhheecCCCCCCCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcc
Q 003409 423 LLHLCEFIEDCEF---TYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMV 489 (822)
Q Consensus 423 l~~L~~~l~~~~~---~~~~~~i~wiLGEy~~~~~~~~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~ 489 (822)
+..+|+.+-+-.. +.++..++| -+||.+..++| +|..+.+++.+++.++
T Consensus 86 v~a~~ekva~q~n~~~~~l~L~vLs-----------------nLfn~~d~~~~-aR~~Vy~~lv~la~~~ 137 (378)
T KOG2753|consen 86 VKAICEKVAKQPNDKTASLRLQVLS-----------------NLFNGVDKPTP-ARYQVYMSLVTLAASC 137 (378)
T ss_pred HHHHHHHHhcCccCCCcccHHHHHH-----------------HHHhccCCCch-HHHHHHHHHHHHHhhc
Confidence 6666665533211 234444555 34555544555 8888888888888775
No 177
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=48.52 E-value=74 Score=31.11 Aligned_cols=104 Identities=10% Similarity=0.129 Sum_probs=63.6
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHhhcCCch---hHHHhhheecCCCCCCCCChHHHHHHHHhhccCCCHHHHHHHHHH
Q 003409 405 VDSIVILIRDIPDAKENGLLHLCEFIEDCEFT---YLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVST 481 (822)
Q Consensus 405 v~~i~~iv~~~p~~~~~~l~~L~~~l~~~~~~---~~~~~i~wiLGEy~~~~~~~~~~i~~i~~~~~~e~~~vr~~~lta 481 (822)
...+..+++.+++.+..+++.+.+.+-..... .......|++-.+.-...+...-+..+++.+..-++.+-..++.|
T Consensus 39 ~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~A 118 (158)
T PF14676_consen 39 IQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRA 118 (158)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 35667778888888888888888876433221 222222333333332333444556666676666677787888888
Q ss_pred HHHHhhccccchHHHHHHHHHHhcCCC
Q 003409 482 LAKFGAMVDALKPRVFVLLRRCLYDGD 508 (822)
Q Consensus 482 l~K~~~~~~~~~~~i~~ll~~~~~d~d 508 (822)
+.=+....+.+++.++.+|++.+..-+
T Consensus 119 l~PLi~~s~~lrd~lilvLRKamf~r~ 145 (158)
T PF14676_consen 119 LLPLIKFSPSLRDSLILVLRKAMFSRE 145 (158)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHTT-SS
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHcccc
Confidence 777777678899999999999876543
No 178
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=47.00 E-value=2.1e+02 Score=35.52 Aligned_cols=76 Identities=21% Similarity=0.249 Sum_probs=52.7
Q ss_pred chhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccCh-hHHHHHHH----HHHHHhcCCChhHHHHHHHHHHHHHhcC
Q 003409 135 DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTP-EIVKRWSN----EVQEAVQSRAALVQFHALALLHQIRQND 209 (822)
Q Consensus 135 ~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~p-e~v~~~~~----~l~~ll~d~~~~V~~~al~lL~~i~~~d 209 (822)
..++..-+.+.+...+.|+.+-=|+.|+-.+...+...+ +....... -+.-.+.|.|..|...|+..|..|+..-
T Consensus 247 ~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~l 326 (815)
T KOG1820|consen 247 RVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKL 326 (815)
T ss_pred hhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhc
Confidence 345777788999999999999999999999998876555 33332111 1222345677777777777777776553
Q ss_pred h
Q 003409 210 R 210 (822)
Q Consensus 210 ~ 210 (822)
+
T Consensus 327 r 327 (815)
T KOG1820|consen 327 R 327 (815)
T ss_pred c
Confidence 3
No 179
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.62 E-value=36 Score=36.67 Aligned_cols=100 Identities=20% Similarity=0.225 Sum_probs=73.0
Q ss_pred hhhhhhhhhcccCCccchhHHHHHHHHhCCC-C-----cchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHH
Q 003409 70 EVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-A-----DEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIE 143 (822)
Q Consensus 70 ~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~-~-----~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~ 143 (822)
.+.+.|++-+.+..-.+=|-.-..+..++.. + ++-.+++--+.|- ...|-++|.-|.++|-.+...-.-+.+.
T Consensus 129 ~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka-~~dnrFvreda~kAL~aMV~~vtp~~~L 207 (334)
T KOG2933|consen 129 EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKA-SQDNRFVREDAEKALVAMVNHVTPQKLL 207 (334)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccchHHHHHHHHHHHHHHhccChHHHH
Confidence 4556688888888888878777777655532 1 2234555444443 3457789998888888877777777888
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhhcc
Q 003409 144 RYLKQAIVDKNPVVASAALVSGIHLLQ 170 (822)
Q Consensus 144 ~~v~~~l~d~~p~VRk~A~la~~~l~~ 170 (822)
+-+..++.|.+|-||.+|++|..+...
T Consensus 208 ~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 208 RKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred HHHHHHHhhhchhhhhhhhccccccce
Confidence 888888999999999999999876554
No 180
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=46.29 E-value=1.6e+02 Score=28.76 Aligned_cols=34 Identities=15% Similarity=0.344 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCch
Q 003409 382 RSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDA 418 (822)
Q Consensus 382 ~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~ 418 (822)
..++..+++++.. ++ ....+.+.+..++..+|-.
T Consensus 115 ~~~i~~ll~l~~~--~~-~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 115 PKFIQSLLQLLQD--SS-CPETALDALATLLPHHPTT 148 (165)
T ss_pred HHHHHHHHHHHhc--cc-cHHHHHHHHHHHHHHCCcc
Confidence 4455666666653 22 5677788888888888754
No 181
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=45.96 E-value=1.7e+02 Score=28.98 Aligned_cols=82 Identities=9% Similarity=0.054 Sum_probs=56.8
Q ss_pred HHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q 003409 331 AITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVI 410 (822)
Q Consensus 331 aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~ 410 (822)
++.-++.=.++.|.+.++++|.+.....+.+....+++.|...|..-|.....|...+..+-...+ ..|...++..+..
T Consensus 3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~-~~f~~~ll~~~~~ 81 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFP-SEFRSLLLNRCQE 81 (209)
T ss_dssp HHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCH-HHHHHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccch-hhHHHHHHHHHHH
Confidence 445555556699999999999988766578999999999999999988776666665554333221 1355555555544
Q ss_pred HHH
Q 003409 411 LIR 413 (822)
Q Consensus 411 iv~ 413 (822)
-+.
T Consensus 82 ~f~ 84 (209)
T PF02854_consen 82 EFE 84 (209)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 182
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=45.68 E-value=1.3e+02 Score=33.83 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=73.2
Q ss_pred ccCCccchhHHHHHHHHhCCCC---------cchhhhhhhHHhhcCCCCHHHHHHHHHHh---cCC--CchhhHHHHHHH
Q 003409 80 QSRDIGLRRMVYLMIKELSPSA---------DEVIIVTSSLMKDMTSKTDMYRANAIRVL---CRI--TDGTLLTQIERY 145 (822)
Q Consensus 80 ~s~d~~lKrl~YL~l~~~~~~~---------~~~lLviNsl~kDl~~~n~~vr~lALr~l---~~I--~~~~~~~~l~~~ 145 (822)
-+.+..+|-.||=.+..+.... +.-.+++=|+.||..+ +.-|--|||.+ ..+ +..++-..+.+.
T Consensus 35 L~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~--~~ER~QALkliR~~l~~~~~~~~~~~~vvra 112 (371)
T PF14664_consen 35 LSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKN--DVEREQALKLIRAFLEIKKGPKEIPRGVVRA 112 (371)
T ss_pred CCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCC--hHHHHHHHHHHHHHHHhcCCcccCCHHHHHH
Confidence 3444778888887773333321 2236677788888654 56666665554 455 555677888999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhhcccChhHHHH--HHHHHHHHhcC
Q 003409 146 LKQAIVDKNPVVASAALVSGIHLLQTTPEIVKR--WSNEVQEAVQS 189 (822)
Q Consensus 146 v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~--~~~~l~~ll~d 189 (822)
|.....+.+.-.|..|+-.+..+.-.+|+++-+ -+.-+.+.+.|
T Consensus 113 lvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 113 LVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID 158 (371)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh
Confidence 999999988889999999999999899998752 33333344444
No 183
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=45.59 E-value=2e+02 Score=32.59 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=86.6
Q ss_pred HHHHHHHHhcCCC-CCccchhh-hhhhhhhhcccCCccchhHHHHHHHHhCCCCcc-hhhhhhhHHhhc---------CC
Q 003409 50 ITKLLYLLNQGET-FTKIEATE-VFFAVTKLFQSRDIGLRRMVYLMIKELSPSADE-VIIVTSSLMKDM---------TS 117 (822)
Q Consensus 50 l~kli~~~~~G~~-f~~~e~s~-lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~-~lLviNsl~kDl---------~~ 117 (822)
...++.++..|++ +..+.... +|-.+...+.|+|+.+--+|-|++.+++...+. .-++-|.+.+-| -+
T Consensus 293 ~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vd 372 (604)
T KOG4500|consen 293 IAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVD 372 (604)
T ss_pred hhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5567778888863 22222222 444466678999999999999999999876443 334444433222 23
Q ss_pred CCHHHHHHHHHHhcCCCch-----hhHHH-HHHHHHHhhc-CCCHHHHHHHHHHHHhhcccChhHH-H------HHHHHH
Q 003409 118 KTDMYRANAIRVLCRITDG-----TLLTQ-IERYLKQAIV-DKNPVVASAALVSGIHLLQTTPEIV-K------RWSNEV 183 (822)
Q Consensus 118 ~n~~vr~lALr~l~~I~~~-----~~~~~-l~~~v~~~l~-d~~p~VRk~A~la~~~l~~~~pe~v-~------~~~~~l 183 (822)
.|-..+-.+|.+|-++..| .+++. +...|...+. +..|.+-| .++-+|+.++..|.+ . +.+.++
T Consensus 373 gnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fk--llgTlrM~~d~qe~~a~eL~kn~~l~ekL 450 (604)
T KOG4500|consen 373 GNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFK--LLGTLRMIRDSQEYIACELAKNPELFEKL 450 (604)
T ss_pred ccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHH--HHHHHHHHHhchHHHHHHHhcCHHHHHHH
Confidence 4444444445555444333 24443 4444544454 44555543 345556655554421 1 244455
Q ss_pred HHHhcCCCh-hHHHHHHHHHHHHHhc
Q 003409 184 QEAVQSRAA-LVQFHALALLHQIRQN 208 (822)
Q Consensus 184 ~~ll~d~~~-~V~~~al~lL~~i~~~ 208 (822)
.+-..++|. +|.+-+..+|..+-+|
T Consensus 451 v~Wsks~D~aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 451 VDWSKSPDFAGVAGESNRLLLGLIKH 476 (604)
T ss_pred HHhhhCCccchhhhhhhHHHHHHHHh
Confidence 554445554 5777777666655554
No 184
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=45.30 E-value=57 Score=31.25 Aligned_cols=58 Identities=22% Similarity=0.149 Sum_probs=38.8
Q ss_pred hhhhhhhHHhhcCCCCHHHHHHHHHHhcC------------CCchhhHHHHHHHHHHhhc-CCCHHHHHHHHHHH
Q 003409 104 VIIVTSSLMKDMTSKTDMYRANAIRVLCR------------ITDGTLLTQIERYLKQAIV-DKNPVVASAALVSG 165 (822)
Q Consensus 104 ~lLviNsl~kDl~~~n~~vr~lALr~l~~------------I~~~~~~~~l~~~v~~~l~-d~~p~VRk~A~la~ 165 (822)
.--++.+|+|-|+++||.+.-+||..|-. |.+.++.+ .+.+.+. ..++-||++++..+
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~----~l~~l~~~~~~~~Vk~kil~li 109 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMD----ELKDLIKTTKNEEVRQKILELI 109 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH----HHHHHHcccCCHHHHHHHHHHH
Confidence 56788999999999999988888876643 23333333 3444443 46677887776543
No 185
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=45.26 E-value=1.2e+02 Score=34.18 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=13.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHH-hhcccChhHH
Q 003409 144 RYLKQAIVDKNPVVASAALVSGI-HLLQTTPEIV 176 (822)
Q Consensus 144 ~~v~~~l~d~~p~VRk~A~la~~-~l~~~~pe~v 176 (822)
.+|++-+..++.+=||.||.-++ .|.++.++.+
T Consensus 213 EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v 246 (370)
T PF08506_consen 213 EYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQV 246 (370)
T ss_dssp HHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccCCcHHHHHHHHHHHHHHHhHHH
Confidence 34444443334444444555544 3444444433
No 186
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=44.84 E-value=37 Score=22.39 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHH
Q 003409 122 YRANAIRVLCRITDGTLLTQIERYLK 147 (822)
Q Consensus 122 vr~lALr~l~~I~~~~~~~~l~~~v~ 147 (822)
+|..|.++|+.|++++-++.+...++
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 57888899999999877777665543
No 187
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=44.63 E-value=1.2e+02 Score=35.22 Aligned_cols=123 Identities=17% Similarity=0.120 Sum_probs=69.7
Q ss_pred HHHHHHHhccCCcchHHHHHHHHHHh---------hh------hcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Q 003409 329 TLAITTLLKTGNESSVDRLMKQITNF---------MS------DIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILR 393 (822)
Q Consensus 329 ~~aL~lL~~l~ne~Nv~~Iv~eL~~y---------~~------~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~ 393 (822)
++.+.=|..-+|.+|+..|+.||.+- .+ ..++.|-.....-++.+-.|||...+.++.-|+-.+.
T Consensus 165 kksInglInkvn~sNi~~ii~eLfqeNiirgRgl~crsv~~aq~asp~ft~vyaALvAviNskfP~IgElLlkrLilqf~ 244 (739)
T KOG2140|consen 165 KKSINGLINKVNASNIQEIIRELFQENIIRGRGLLCRSVMQAQAASPGFTPVYAALVAVINSKFPQIGELLLKRLILQFK 244 (739)
T ss_pred HHHhHHHHhhhhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCCCcHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Confidence 45566677778999999999998752 11 1223344444444566778999988877776654443
Q ss_pred h---cCCcchHHHHHHHHHHHHHhCCchHHH-HHHHHHHHhhcCCchhHH------HhhheecCCCCCC
Q 003409 394 E---EGGFEYKKAIVDSIVILIRDIPDAKEN-GLLHLCEFIEDCEFTYLS------TQILHFLGTEGPK 452 (822)
Q Consensus 394 ~---~g~~~v~~~iv~~i~~iv~~~p~~~~~-~l~~L~~~l~~~~~~~~~------~~i~wiLGEy~~~ 452 (822)
. ..++..--.++.+|..++. +.-.|+- ++..|.=.|+.+....+. .-+.|-|.+-++.
T Consensus 245 r~f~RnDk~~c~~~~kfiahLin-q~VahEIv~Leil~lLLe~PTddSvevaI~flkecGakL~~VSpr 312 (739)
T KOG2140|consen 245 RSFRRNDKVSCLNASKFIAHLIN-QQVAHEIVALEILTLLLERPTDDSVEVAIAFLKECGAKLAEVSPR 312 (739)
T ss_pred HHhcccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhChH
Confidence 2 1233222333444444443 3445554 445555566776544332 3345666665544
No 188
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.51 E-value=1e+02 Score=35.34 Aligned_cols=98 Identities=18% Similarity=0.155 Sum_probs=67.1
Q ss_pred hHHhhcCCCCHHHHHHHHHHhcCCCch------hhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHhhcccCh-h----HHH
Q 003409 110 SLMKDMTSKTDMYRANAIRVLCRITDG------TLLTQIERYLKQAIVD-KNPVVASAALVSGIHLLQTTP-E----IVK 177 (822)
Q Consensus 110 sl~kDl~~~n~~vr~lALr~l~~I~~~------~~~~~l~~~v~~~l~d-~~p~VRk~A~la~~~l~~~~p-e----~v~ 177 (822)
++-.-..||+..+|++|+|.|++.... .+...+...|..+|-| -+.-|-=.|+.|+.++.++.. + ...
T Consensus 262 ~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l 341 (533)
T KOG2032|consen 262 SLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL 341 (533)
T ss_pred HHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch
Confidence 334445789999999999999987544 4556677777777765 456787788888877765332 1 122
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003409 178 RWSNEVQEAVQSRAALVQFHALALLHQIRQ 207 (822)
Q Consensus 178 ~~~~~l~~ll~d~~~~V~~~al~lL~~i~~ 207 (822)
+...++..+..+.++.+-++|+.++-.+.+
T Consensus 342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 342 NIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred hHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 455566777777788888888777665543
No 189
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=43.18 E-value=6.4e+02 Score=29.98 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhc-CCCchhHH
Q 003409 231 QCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLS-SSKPVLRF 309 (822)
Q Consensus 231 ~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~-s~~~n~ry 309 (822)
.|++|+.+.....+ .|......+++-|...+-..-++|..||+.+++.+...+...-...++.|.-++. .+..++|-
T Consensus 111 ~lqila~~~d~v~e--IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vqnDPS~EVRr 188 (885)
T COG5218 111 SLQILALLSDVVRE--IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDIVQNDPSDEVRR 188 (885)
T ss_pred HHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCcHHHHHH
Confidence 34555555443211 1323333344444445556789999999999999863322333445555554444 45566888
Q ss_pred HHHHhhc
Q 003409 310 AAVRTLN 316 (822)
Q Consensus 310 ~aL~~l~ 316 (822)
+||-.+.
T Consensus 189 ~allni~ 195 (885)
T COG5218 189 LALLNIS 195 (885)
T ss_pred HHHHHee
Confidence 8887653
No 190
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=43.01 E-value=1.7e+02 Score=27.98 Aligned_cols=70 Identities=17% Similarity=0.069 Sum_probs=45.5
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHH
Q 003409 146 LKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSK 215 (822)
Q Consensus 146 v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~ 215 (822)
|.++-.....---..+.+-+..++...|+-.+.-+..+..-+.++|+.|+..||.+|-.+.++=+..++.
T Consensus 6 iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ 75 (139)
T cd03567 6 LNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHS 75 (139)
T ss_pred HHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 3444433333333456666666666666655666666777788889999999999988887764444443
No 191
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.44 E-value=1.6e+02 Score=31.94 Aligned_cols=89 Identities=15% Similarity=0.240 Sum_probs=59.3
Q ss_pred hHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcC---CCchh---hHHHHHHHHHHhhcCCCHHHHHHH
Q 003409 88 RMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCR---ITDGT---LLTQIERYLKQAIVDKNPVVASAA 161 (822)
Q Consensus 88 rl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~---I~~~~---~~~~l~~~v~~~l~d~~p~VRk~A 161 (822)
+.-|+..++|.+- +..-++.++..+-|.|.+=...+-+|..|.+ .-.+. |...++-.|.+.+.+.+..|.|+|
T Consensus 71 ~~e~~~sk~l~~f-d~p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA 149 (334)
T KOG2933|consen 71 SVEYIVSKNLSPF-DDPEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAA 149 (334)
T ss_pred cHHHhhhcccCcc-CcHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 4556666555443 3344555777777888887777777655553 33333 333466667788888889999999
Q ss_pred HHHHHhhcccChhHHH
Q 003409 162 LVSGIHLLQTTPEIVK 177 (822)
Q Consensus 162 ~la~~~l~~~~pe~v~ 177 (822)
++++-.++..+-+.+.
T Consensus 150 ~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 150 CMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988865544443
No 192
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=41.46 E-value=1.7e+02 Score=30.98 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=41.2
Q ss_pred hHHhhcCCCCH--HHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHh
Q 003409 110 SLMKDMTSKTD--MYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAV 187 (822)
Q Consensus 110 sl~kDl~~~n~--~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll 187 (822)
.++.-|.+.+. +.|=.|+=.|-++++.+-+.. +.+.+.+.++..|-.++.++-+|- +|..+..+...+.+.
T Consensus 158 ~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~a----l~~~l~~~SalfrhEvAfVfGQl~--s~~ai~~L~k~L~d~- 230 (289)
T KOG0567|consen 158 ELRAELLDETKPLFERYRAMFYLRNIGTEEAINA----LIDGLADDSALFRHEVAFVFGQLQ--SPAAIPSLIKVLLDE- 230 (289)
T ss_pred HHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHH----HHHhcccchHHHHHHHHHHHhhcc--chhhhHHHHHHHHhh-
Confidence 34444444333 444455555556655543333 333444556666666666665552 333333222222111
Q ss_pred cCCChhHHHHHHHHHHHHHh
Q 003409 188 QSRAALVQFHALALLHQIRQ 207 (822)
Q Consensus 188 ~d~~~~V~~~al~lL~~i~~ 207 (822)
..+|||-.-|.-+|-.|..
T Consensus 231 -~E~pMVRhEaAeALGaIa~ 249 (289)
T KOG0567|consen 231 -TEHPMVRHEAAEALGAIAD 249 (289)
T ss_pred -hcchHHHHHHHHHHHhhcC
Confidence 2245555544444444443
No 193
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=41.41 E-value=3.8e+02 Score=29.28 Aligned_cols=162 Identities=18% Similarity=0.141 Sum_probs=0.0
Q ss_pred hcCCCCHHHHHHHHHHhcCCC------------chhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhc----ccChhHHH
Q 003409 114 DMTSKTDMYRANAIRVLCRIT------------DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLL----QTTPEIVK 177 (822)
Q Consensus 114 Dl~~~n~~vr~lALr~l~~I~------------~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~----~~~pe~v~ 177 (822)
++.+++...|-.||+.+.++. ..+++..+.+.+|+.=. .....-..+++++-+- ....++++
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~--~E~~lA~~~l~Ll~ltlg~g~~~~ei~~ 128 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS--EEQALAARALALLALTLGAGEDSEEIFE 128 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHhhhcCCCccHHHHHH
Q ss_pred HHHHHHHHHhcCCChhHHH-----HHHHHHHHHHhcChHHHHHHHHHhc----------------CCCCCChhHHHHHHH
Q 003409 178 RWSNEVQEAVQSRAALVQF-----HALALLHQIRQNDRLAVSKLVTSLT----------------RGTVRSPLAQCLLIR 236 (822)
Q Consensus 178 ~~~~~l~~ll~d~~~~V~~-----~al~lL~~i~~~d~~~i~~Li~~l~----------------~~~~~~~w~~v~llr 236 (822)
...+.+...+.|....+.. .||+++.-+.-.+...+..++..+. .+..+++-..+--|.
T Consensus 129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~ 208 (309)
T PF05004_consen 129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS 208 (309)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Q ss_pred HHHhhhhcccCC---CCCchhhHHHHHHHhccCChhhHHHHHHHH
Q 003409 237 YTTQVIREAATT---QTGDRPFYDFLESCLRHKAEMVIFEAARAI 278 (822)
Q Consensus 237 ~l~~~~~~~~~d---~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i 278 (822)
--+.++.. ..+ ....+..++.|..+|.+.+..|...|..+|
T Consensus 209 aW~lLlt~-~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEai 252 (309)
T PF05004_consen 209 AWALLLTT-LPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAI 252 (309)
T ss_pred HHHHHHhc-CCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
No 194
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=41.19 E-value=60 Score=23.44 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=19.9
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHH
Q 003409 349 KQITNFMSDIADEFKIVVVEAIRSLC 374 (822)
Q Consensus 349 ~eL~~y~~~~~~~~k~~~v~aI~~la 374 (822)
+.|...+.+.+.+.+..++.+++.||
T Consensus 15 ~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 15 PPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 55666777778888888888888776
No 195
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=40.94 E-value=4.2e+02 Score=30.50 Aligned_cols=124 Identities=17% Similarity=0.134 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHhCcccHHHHHHH----HHHHHhhcCCcchHHHHHHHHHHHHHhCCch----HHHHHHHHHHHhhc
Q 003409 361 EFKIVVVEAIRSLCLKFPLKYRSLMNF----LSNILREEGGFEYKKAIVDSIVILIRDIPDA----KENGLLHLCEFIED 432 (822)
Q Consensus 361 ~~k~~~v~aI~~la~k~~~~~~~~v~~----l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~----~~~~l~~L~~~l~~ 432 (822)
+.+..+-.=+.-+|+--=..|+.+.+. +++.|++..+...+..+..++..++++.|.. -+-++.++.+.-.|
T Consensus 303 ~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~d 382 (516)
T KOG2956|consen 303 ERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKD 382 (516)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhC
Confidence 334333334455565433456655554 4566666445557888889999999998854 33444444444333
Q ss_pred CCchhHHH----hhheecCCCCCCCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhccc
Q 003409 433 CEFTYLST----QILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVD 490 (822)
Q Consensus 433 ~~~~~~~~----~i~wiLGEy~~~~~~~~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~~ 490 (822)
... +..+ .+.-++.-| .|...|..|...+..++...-.+++-.++|++.+.+
T Consensus 383 s~~-~v~~~Aeed~~~~las~-----~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~ 438 (516)
T KOG2956|consen 383 SQD-EVMRVAEEDCLTTLASH-----LPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLS 438 (516)
T ss_pred Cch-hHHHHHHHHHHHHHHhh-----CchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcC
Confidence 322 2211 122333333 244444444444444566666677778899888764
No 196
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=40.76 E-value=4.8e+02 Score=32.55 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHhcCCCCCccchhhhhhhhhh-hcccCCccchhHHHHHHHHhCCC-----CcchhhhhhhHHhhcCCCCH
Q 003409 47 SQVITKLLYLLNQGETFTKIEATEVFFAVTK-LFQSRDIGLRRMVYLMIKELSPS-----ADEVIIVTSSLMKDMTSKTD 120 (822)
Q Consensus 47 ~~~l~kli~~~~~G~~f~~~e~s~lf~~v~k-l~~s~d~~lKrl~YL~l~~~~~~-----~~~~lLviNsl~kDl~~~n~ 120 (822)
.+++..++-.+..-..-.....+.+..-..| ..-..+...-.+.-.++..++.. .+-+..+.|.|-.=+.+...
T Consensus 271 ~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~ 350 (815)
T KOG1820|consen 271 KEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKS 350 (815)
T ss_pred HHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccH
Confidence 3457777776664221111122233333333 33345555555555555555542 24478899999999999999
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccCh------hHHHHHHHHHHHHhcCCChhH
Q 003409 121 MYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTP------EIVKRWSNEVQEAVQSRAALV 194 (822)
Q Consensus 121 ~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~p------e~v~~~~~~l~~ll~d~~~~V 194 (822)
.+|-.++.++=.+....-...+.+.|..++.+++|-+|--...-+-+.++... +.++..++.+....+|++.-|
T Consensus 351 ~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~V 430 (815)
T KOG1820|consen 351 ELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDV 430 (815)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHH
Confidence 99988777766666666778889999999999999999887777766666544 345678888888899998877
Q ss_pred HHHHHH---HHHHHHhcChHHHHHHHHHhc
Q 003409 195 QFHALA---LLHQIRQNDRLAVSKLVTSLT 221 (822)
Q Consensus 195 ~~~al~---lL~~i~~~d~~~i~~Li~~l~ 221 (822)
--+|+. .++.+.-. ..+.+++..+.
T Consensus 431 R~Aa~e~~~~v~k~~Ge--~~~~k~L~~~~ 458 (815)
T KOG1820|consen 431 RKAALEAVAAVMKVHGE--EVFKKLLKDLD 458 (815)
T ss_pred HHHHHHHHHHHHHHhhH--HHHHHHHHhhc
Confidence 655554 44443333 55666666554
No 197
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.57 E-value=1.1e+03 Score=32.10 Aligned_cols=101 Identities=12% Similarity=0.130 Sum_probs=59.7
Q ss_pred hhhhhHHhhcCCCCHHHHHHHHHHhcCC----CchhhHHHHHHHHHHhhcCC-CHHHHHHHHHHHHhhcccChhHH----
Q 003409 106 IVTSSLMKDMTSKTDMYRANAIRVLCRI----TDGTLLTQIERYLKQAIVDK-NPVVASAALVSGIHLLQTTPEIV---- 176 (822)
Q Consensus 106 LviNsl~kDl~~~n~~vr~lALr~l~~I----~~~~~~~~l~~~v~~~l~d~-~p~VRk~A~la~~~l~~~~pe~v---- 176 (822)
+..=-+..++..+||..||.|-.+++++ ..+.+.-.+.+...+.+.+. +|+-|---.+++..+.+..-.+.
T Consensus 876 ~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qh 955 (2067)
T KOG1822|consen 876 SALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQH 955 (2067)
T ss_pred HHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchh
Confidence 4445566788999999999887777764 34445555556655555554 45444444445544444332222
Q ss_pred -HHHHHHHHHHhcCCC-hhHHHHHHHHHHHHH
Q 003409 177 -KRWSNEVQEAVQSRA-ALVQFHALALLHQIR 206 (822)
Q Consensus 177 -~~~~~~l~~ll~d~~-~~V~~~al~lL~~i~ 206 (822)
..-+..+..+-.|+. |.|+-.++..+..+.
T Consensus 956 l~t~v~illal~~Ds~~p~VqtwSL~al~~i~ 987 (2067)
T KOG1822|consen 956 LNTSVSILLALATDSTSPVVQTWSLHALALIL 987 (2067)
T ss_pred cccHHHHHHHHhhcCCCchhhhhHHHHHHHHH
Confidence 233445556666665 488887776665543
No 198
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=40.31 E-value=5.4e+02 Score=28.26 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHhcCC---CchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcc
Q 003409 118 KTDMYRANAIRVLCRI---TDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQ 170 (822)
Q Consensus 118 ~n~~vr~lALr~l~~I---~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~ 170 (822)
.||-....++.+++.= .+.++-..+...+++++.|+.+-|||.-+.++...+.
T Consensus 35 ~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 35 SNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred cCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 6777777777766641 1567888999999999999999899999999988775
No 199
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=40.05 E-value=48 Score=23.93 Aligned_cols=27 Identities=22% Similarity=0.014 Sum_probs=22.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHhh
Q 003409 142 IERYLKQAIVDKNPVVASAALVSGIHL 168 (822)
Q Consensus 142 l~~~v~~~l~d~~p~VRk~A~la~~~l 168 (822)
.++.+.+++.+.++.|++.|+-|+..|
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 577788888899999999999888765
No 200
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=39.44 E-value=6.3e+02 Score=28.87 Aligned_cols=135 Identities=16% Similarity=0.218 Sum_probs=88.9
Q ss_pred hhhhhhhhhcc-cCCccchhHHHHHHHHhCCCCcc--hhh--------hhhhHH--hhcCCCCH----HHHHHHHHHhcC
Q 003409 70 EVFFAVTKLFQ-SRDIGLRRMVYLMIKELSPSADE--VII--------VTSSLM--KDMTSKTD----MYRANAIRVLCR 132 (822)
Q Consensus 70 ~lf~~v~kl~~-s~d~~lKrl~YL~l~~~~~~~~~--~lL--------viNsl~--kDl~~~n~----~vr~lALr~l~~ 132 (822)
.+.|..+++++ +-++..+-|++-.+ .++.++++ +.+ .+|-++ ||++++.+ +-|+.-|-++-.
T Consensus 223 sl~~~l~~ll~~~v~~d~~eM~feil-a~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll 301 (604)
T KOG4500|consen 223 SLVFMLLQLLPSMVREDIDEMIFEIL-AKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL 301 (604)
T ss_pred hHHHHHHHHHHHhhccchhhHHHHHH-HHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhh
Confidence 34455677776 45666777877766 44333333 222 234444 47777655 556777777777
Q ss_pred CCchhhHH-----HHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhH---HH-HHHHHHHHHhc-----CCChhHHHHH
Q 003409 133 ITDGTLLT-----QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEI---VK-RWSNEVQEAVQ-----SRAALVQFHA 198 (822)
Q Consensus 133 I~~~~~~~-----~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~---v~-~~~~~l~~ll~-----d~~~~V~~~a 198 (822)
.++.+|-. .+...+..++.+.+...--.+++++..+.|...-. ++ .+++.+.+++. |.|.-+++++
T Consensus 302 tGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ 381 (604)
T KOG4500|consen 302 TGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHAC 381 (604)
T ss_pred cCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHH
Confidence 78888543 26667778887777778889999998888765433 33 58888888775 3455678888
Q ss_pred HHHHHHH
Q 003409 199 LALLHQI 205 (822)
Q Consensus 199 l~lL~~i 205 (822)
+++|-.+
T Consensus 382 lsALRnl 388 (604)
T KOG4500|consen 382 LSALRNL 388 (604)
T ss_pred HHHHHhc
Confidence 8777654
No 201
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=39.24 E-value=1.1e+02 Score=28.76 Aligned_cols=75 Identities=13% Similarity=0.055 Sum_probs=47.4
Q ss_pred HHHHHhCCCC-cchhhhhhhHHhhcCCCCHHHHHHHHHHhcCC---CchhhHH-----HHHHHHHHhhcC---CCHHHHH
Q 003409 92 LMIKELSPSA-DEVIIVTSSLMKDMTSKTDMYRANAIRVLCRI---TDGTLLT-----QIERYLKQAIVD---KNPVVAS 159 (822)
Q Consensus 92 L~l~~~~~~~-~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I---~~~~~~~-----~l~~~v~~~l~d---~~p~VRk 159 (822)
+.++...... ...--++.+|+|=|+++||.++-+||..|-.+ +++.+.. .....+.+.+.. .++-||+
T Consensus 22 l~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~ 101 (133)
T cd03561 22 LELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVRE 101 (133)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHH
Confidence 4444444443 34788999999999999999999998776532 2222222 233345555544 4677888
Q ss_pred HHHHHHH
Q 003409 160 AALVSGI 166 (822)
Q Consensus 160 ~A~la~~ 166 (822)
+++-.+.
T Consensus 102 kil~ll~ 108 (133)
T cd03561 102 KALELIL 108 (133)
T ss_pred HHHHHHH
Confidence 8765543
No 202
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=38.76 E-value=5.1e+02 Score=27.57 Aligned_cols=85 Identities=16% Similarity=0.297 Sum_probs=51.5
Q ss_pred hhhHHHHHHHHhccCCcchHHHHHHHHHHhhh---hcCHHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHhhcCCcch
Q 003409 325 RSIATLAITTLLKTGNESSVDRLMKQITNFMS---DIADEFKIVVVEAIRSLCLKF-PLKYRSLMNFLSNILREEGGFEY 400 (822)
Q Consensus 325 ~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~---~~~~~~k~~~v~aI~~la~k~-~~~~~~~v~~l~~lL~~~g~~~v 400 (822)
..++..| +.|..+|...+...|-+=+..|.. ...++|-..++..| ++-| |.-...++.+++++|.+ |.--+
T Consensus 130 ~~~~~~A-~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l---~~~f~P~~~~~~l~~Ll~lL~n-~~~w~ 204 (262)
T PF14225_consen 130 QECIEIA-EALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYL---REAFFPDHEFQILTFLLGLLEN-GPPWL 204 (262)
T ss_pred HHHHHHH-HHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHH---HHHhCchhHHHHHHHHHHHHhC-CcHHH
Confidence 3344444 555666655444444444444433 22456766666655 4566 66667899999999986 43347
Q ss_pred HHHHHHHHHHHHHh
Q 003409 401 KKAIVDSIVILIRD 414 (822)
Q Consensus 401 ~~~iv~~i~~iv~~ 414 (822)
+..+...+.-++..
T Consensus 205 ~~~~L~iL~~ll~~ 218 (262)
T PF14225_consen 205 RRKTLQILKVLLPH 218 (262)
T ss_pred HHHHHHHHHHHhcc
Confidence 77777777766654
No 203
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=38.62 E-value=5.7e+02 Score=28.06 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=48.0
Q ss_pred cCCCCchhhHHHHHHHHhccCCcchH----HHHHHHHHHhhhhc--CHHHHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Q 003409 319 LISDQNRSIATLAITTLLKTGNESSV----DRLMKQITNFMSDI--ADEFKIVVVEAIRSLCLKFPL-KYRSLMNFLSNI 391 (822)
Q Consensus 319 lL~d~d~sIr~~aL~lL~~l~ne~Nv----~~Iv~eL~~y~~~~--~~~~k~~~v~aI~~la~k~~~-~~~~~v~~l~~l 391 (822)
+..++|...-.++++.++.-..+..- ..+-+-+...+... ..+.|+.+...+..+..+.|. -...+++-+.+.
T Consensus 173 l~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l~~~li~~l~~~ 252 (339)
T PF12074_consen 173 LASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELLSKSLISGLWKW 252 (339)
T ss_pred cCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 45555666666777666543333222 22233344445555 788999999999998888887 566777777777
Q ss_pred Hhh
Q 003409 392 LRE 394 (822)
Q Consensus 392 L~~ 394 (822)
|..
T Consensus 253 l~~ 255 (339)
T PF12074_consen 253 LSS 255 (339)
T ss_pred HHh
Confidence 753
No 204
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=36.61 E-value=7.9e+02 Score=29.16 Aligned_cols=136 Identities=11% Similarity=0.104 Sum_probs=83.2
Q ss_pred hhhhhhcccCCccchhHHHHHHHHhCCCCcchh--------------------------hhhhhHHh---hc--CCCCH-
Q 003409 73 FAVTKLFQSRDIGLRRMVYLMIKELSPSADEVI--------------------------IVTSSLMK---DM--TSKTD- 120 (822)
Q Consensus 73 ~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~~l--------------------------LviNsl~k---Dl--~~~n~- 120 (822)
.-.+..|-|++-.++-+.--||+.++++.-+.- -.-|-|.| |- .+=|+
T Consensus 266 alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~s 345 (858)
T COG5215 266 ALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPS 345 (858)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchh
Confidence 334456778888888888888866655321110 11133444 11 12244
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChh-----HHHHHHHHHHHHhcCCChhHH
Q 003409 121 MYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPE-----IVKRWSNEVQEAVQSRAALVQ 195 (822)
Q Consensus 121 ~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe-----~v~~~~~~l~~ll~d~~~~V~ 195 (822)
+--+.-|...+.+....|.+.+...|.+.+.+.+..=|-.|++|.-.+...--+ +|.+.++.+..+.+|+.--|-
T Consensus 346 maA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk 425 (858)
T COG5215 346 MAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVK 425 (858)
T ss_pred hhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehh
Confidence 334555888888899999999999999999999999999999998877643222 233455555555655533332
Q ss_pred HHHHHHHHHHHhc
Q 003409 196 FHALALLHQIRQN 208 (822)
Q Consensus 196 ~~al~lL~~i~~~ 208 (822)
..+--.++.|..+
T Consensus 426 ~ttAwc~g~iad~ 438 (858)
T COG5215 426 STTAWCFGAIADH 438 (858)
T ss_pred hHHHHHHHHHHHH
Confidence 2222124555444
No 205
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=35.64 E-value=2.7e+02 Score=33.24 Aligned_cols=101 Identities=11% Similarity=0.067 Sum_probs=51.9
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHhhc-c-CcCCCC----chhhHHHHHHHHhccCCcchHHHHHHHHHHhhh-hcCHHHH
Q 003409 291 PAITVLQLFLSSSKPVLRFAAVRTLN-K-SLISDQ----NRSIATLAITTLLKTGNESSVDRLMKQITNFMS-DIADEFK 363 (822)
Q Consensus 291 ~a~~~L~~~l~s~~~n~ry~aL~~l~-~-~lL~d~----d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~-~~~~~~k 363 (822)
.+...|.....+ + --.|-.|...- . .-..|. ....-.++|.--...-+.+ ...+|..++.+-= ..++++.
T Consensus 15 ~V~~AL~~~~~G-d-~~~Y~~L~~~l~~~~~~~d~~~~~~l~~~L~~L~~~Vs~Ld~~-~~~LV~ail~~~W~~~~~~~v 91 (563)
T PF05327_consen 15 FVRSALESHEKG-D-SSQYDELVEQLSDPSESKDAISVSQLIRWLKALSSCVSLLDSS-CKQLVEAILSLNWLGRDEDFV 91 (563)
T ss_dssp HHHHHHHHHHTT----HHHHHHHHHHHS-TT-TTS--HHHHHHHHHHHHHGGGGG-SC-CHHHHHHHHT-TGGGS-HHHH
T ss_pred HHHHHHHHHhcC-C-HHHHHHHHHHHcccccCcccccHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHcCCCCCCCHHHH
Confidence 344566666554 2 23565555422 2 112222 1112234444444444555 7777777766521 3567777
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhh
Q 003409 364 IVVVEAIRSLCLKFPLKYRSLMNFLSNILRE 394 (822)
Q Consensus 364 ~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~ 394 (822)
..-+.=++.|+...+.-...|++.|++.+..
T Consensus 92 ~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~p 122 (563)
T PF05327_consen 92 EAYIQFLINLVSAQPKYLSPVLSMLVKNFIP 122 (563)
T ss_dssp HHHHHHHHHHHHH-GGGHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhccC
Confidence 7777777777777766666777766666653
No 206
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=35.20 E-value=1.8e+02 Score=27.28 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=35.9
Q ss_pred HHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHH
Q 003409 160 AALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSK 215 (822)
Q Consensus 160 ~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~ 215 (822)
.+.+.+..++...++-.+.-+..+..-+..+||.|+..|+.+|-.+.++-+..++.
T Consensus 19 ~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~ 74 (133)
T cd03561 19 ALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHL 74 (133)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHH
Confidence 45555555555555444555556666677778888888988888777664444433
No 207
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=34.86 E-value=2.3e+02 Score=26.86 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=49.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHH
Q 003409 142 IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS 214 (822)
Q Consensus 142 l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~ 214 (822)
+...|.++-.+..+---..+.+.+..+.+..++-.+..+..+..-+..++|.|+..||.+|-.+-++-+..++
T Consensus 6 ~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~ 78 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFH 78 (140)
T ss_dssp HHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3445555555544434456777777777777777777777777778889999999999998888777544443
No 208
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=34.69 E-value=2.8e+02 Score=34.39 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=50.7
Q ss_pred CcCCCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhhcC
Q 003409 318 SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCL-KFPLKYRSLMNFLSNILREEG 396 (822)
Q Consensus 318 ~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~-k~~~~~~~~v~~l~~lL~~~g 396 (822)
..+.|.+..||...+.++.+. +|.-. .....+++.+|. -||..|...+.-|+..|++ +
T Consensus 77 ~i~p~e~v~IR~~l~~lii~s---~n~l~-----------------iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~-~ 135 (947)
T COG5657 77 SILPDENVLIRDELFSLIISS---SNQLQ-----------------IQNALAVSRIARLDFPDEWPTLVPDLLSLLSE-K 135 (947)
T ss_pred CCCCccchHHHHHHHHHHHcc---cchHH-----------------HHHHHHHHHHHhccCcccchhHHHHHHhhhcc-c
Confidence 566777778999888887654 33222 234455666664 6899999999999999986 6
Q ss_pred CcchHHHHHHHHHHHHHh
Q 003409 397 GFEYKKAIVDSIVILIRD 414 (822)
Q Consensus 397 ~~~v~~~iv~~i~~iv~~ 414 (822)
++.....++.++-+|+++
T Consensus 136 D~~tn~~~L~~~h~Ifk~ 153 (947)
T COG5657 136 DMVTNENSLRVLHHIFKR 153 (947)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 664444455555555543
No 209
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.20 E-value=2e+02 Score=36.33 Aligned_cols=127 Identities=14% Similarity=0.099 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHhcCCCCCccchhhhh--hhhhhhccc-CCccchhHHHHHHHHhCCCCcch------hhhhhhHHhhcC
Q 003409 46 CSQVITKLLYLLNQGETFTKIEATEVF--FAVTKLFQS-RDIGLRRMVYLMIKELSPSADEV------IIVTSSLMKDMT 116 (822)
Q Consensus 46 ~~~~l~kli~~~~~G~~f~~~e~s~lf--~~v~kl~~s-~d~~lKrl~YL~l~~~~~~~~~~------lLviNsl~kDl~ 116 (822)
-|+.-.=+++.+..|.+.|+..+...- ..-+..+.+ ...-+|+-+-+.|..+...-+++ .++---+-.-|.
T Consensus 573 qrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls 652 (1387)
T KOG1517|consen 573 QRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS 652 (1387)
T ss_pred HHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc
Confidence 344234566677777777776554221 111223344 35678999999888887654444 233334455678
Q ss_pred CCCHHHHHHHHHHhcCCCch----------------------hhHHHHHH----HHHHhhcCCCHHHHHHHHHHHHhhcc
Q 003409 117 SKTDMYRANAIRVLCRITDG----------------------TLLTQIER----YLKQAIVDKNPVVASAALVSGIHLLQ 170 (822)
Q Consensus 117 ~~n~~vr~lALr~l~~I~~~----------------------~~~~~l~~----~v~~~l~d~~p~VRk~A~la~~~l~~ 170 (822)
|+-|.|||.|+-+|+.+.+. .-++.++. .+..++.|.+|.||+..++++.|...
T Consensus 653 D~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 653 DPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred CccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 89999999999988875442 11333333 56677889999999998888887654
Q ss_pred cC
Q 003409 171 TT 172 (822)
Q Consensus 171 ~~ 172 (822)
.+
T Consensus 733 g~ 734 (1387)
T KOG1517|consen 733 GY 734 (1387)
T ss_pred hh
Confidence 44
No 210
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.69 E-value=2.4e+02 Score=34.82 Aligned_cols=66 Identities=14% Similarity=0.241 Sum_probs=46.8
Q ss_pred hhhhhHHhhcCCCCHHHHHHHHHHhcCCC------chhhHHHHHHHHHHh-hcCCCHHHHHHHHHHHHhhccc
Q 003409 106 IVTSSLMKDMTSKTDMYRANAIRVLCRIT------DGTLLTQIERYLKQA-IVDKNPVVASAALVSGIHLLQT 171 (822)
Q Consensus 106 LviNsl~kDl~~~n~~vr~lALr~l~~I~------~~~~~~~l~~~v~~~-l~d~~p~VRk~A~la~~~l~~~ 171 (822)
..+|++.+-..+|+...|+.++-.++.++ ..+..-.+..-|... -.|.++.|||+|+.-+.++.+.
T Consensus 847 ~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 847 VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 67899999999999999998877766532 233333333333333 3689999999999988877653
No 211
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=33.65 E-value=6.1e+02 Score=26.96 Aligned_cols=48 Identities=6% Similarity=0.101 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHh
Q 003409 346 RLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLK-YRSLMNFLSNILR 393 (822)
Q Consensus 346 ~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~-~~~~v~~l~~lL~ 393 (822)
..+.-|.+=+.+.....|.++.+.+..|+.+|+.. ...++..+++-|+
T Consensus 208 ~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 208 FAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 44444554455556668888888888888888753 4455555555444
No 212
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=33.65 E-value=65 Score=33.62 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=20.7
Q ss_pred chhhHHHHHHHHhccC-CcchHHHHH
Q 003409 324 NRSIATLAITTLLKTG-NESSVDRLM 348 (822)
Q Consensus 324 d~sIr~~aL~lL~~l~-ne~Nv~~Iv 348 (822)
..|=+++||+.|.|++ .+.||+-|+
T Consensus 137 ~lSPqrlaLEaLcKLsV~e~NVDliL 162 (257)
T PF12031_consen 137 PLSPQRLALEALCKLSVIENNVDLIL 162 (257)
T ss_pred CCCHHHHHHHHHHHhheeccCcceee
Confidence 3677899999999986 788888765
No 213
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=33.42 E-value=84 Score=32.14 Aligned_cols=134 Identities=13% Similarity=0.125 Sum_probs=75.1
Q ss_pred hhcccCCccchhHHHHHHHHhCCC-CcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCC--CchhhHHHHHHHHHHhhcCC
Q 003409 77 KLFQSRDIGLRRMVYLMIKELSPS-ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRI--TDGTLLTQIERYLKQAIVDK 153 (822)
Q Consensus 77 kl~~s~d~~lKrl~YL~l~~~~~~-~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I--~~~~~~~~l~~~v~~~l~d~ 153 (822)
.+++++-++.|-++-.++...... ++..+-.+-.+..+. +.=..+=++|-+.++.+ ..+. +...+.+...+.
T Consensus 53 ~Lw~~~~~E~r~~al~~l~~~~~~~~~~~~~~~~~~l~~~-~~Wd~vD~~~~~i~g~~~~~~~~----~~~~l~~W~~s~ 127 (208)
T cd07064 53 ELWQQPEREYQYVAIDLLRKYKKFLTPEDLPLLEELITTK-SWWDTVDSLAKVVGGILLADYPE----FEPVMDEWSTDE 127 (208)
T ss_pred HHHcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC-chHHHHHHHHHHHhHHHHhCChh----HHHHHHHHHcCC
Confidence 456676666666665555433221 112111111222221 22234445555555442 2222 356678888999
Q ss_pred CHHHHHHHHHHHHhhccc-ChhHHHHHHHHHHHHhcCCChhHHHHHHH-HHHHHHhcChHHHHHHHHH
Q 003409 154 NPVVASAALVSGIHLLQT-TPEIVKRWSNEVQEAVQSRAALVQFHALA-LLHQIRQNDRLAVSKLVTS 219 (822)
Q Consensus 154 ~p~VRk~A~la~~~l~~~-~pe~v~~~~~~l~~ll~d~~~~V~~~al~-lL~~i~~~d~~~i~~Li~~ 219 (822)
+.++||.|+++.++..+. .++.+.. -+..++.|+..-|+- |++ +|-++.+.|+..+...+..
T Consensus 128 ~~W~rR~ai~~~l~~~~~~~~~~l~~---~~~~~~~d~e~fI~K-AiGW~LRe~~k~d~~~V~~fl~~ 191 (208)
T cd07064 128 NFWLRRTAILHQLKYKEKTDTDLLFE---IILANLGSKEFFIRK-AIGWALREYSKTNPDWVRDFVAA 191 (208)
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHH---HHHHhCCChHHHHHH-HHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999987775442 3443333 344456666555553 444 7888888888887776664
No 214
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=31.81 E-value=4.2e+02 Score=25.38 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=32.2
Q ss_pred HHHHHHHhhhh-cCHHHHHHHHHHHHHHHHhCcccHH-HHHHHHHHHHhhcCCcch
Q 003409 347 LMKQITNFMSD-IADEFKIVVVEAIRSLCLKFPLKYR-SLMNFLSNILREEGGFEY 400 (822)
Q Consensus 347 Iv~eL~~y~~~-~~~~~k~~~v~aI~~la~k~~~~~~-~~v~~l~~lL~~~g~~~v 400 (822)
.+++|...+.. .+.+.|..+..-|...+..|+.... .++..+.+.|..+| +.|
T Consensus 81 Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~~G-~~f 135 (144)
T cd03568 81 FTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMSDLYKKLKNEG-PDL 135 (144)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHcC-CCC
Confidence 33444444443 5677888888888888888875432 34555556666544 434
No 215
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=31.61 E-value=6.6e+02 Score=27.60 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=44.6
Q ss_pred hhhHHhhcCCCCHHHHHHHHHHhcCCCc---hhhHHHHHHH-------HHHhhcCCC-------------HHHHHHHHHH
Q 003409 108 TSSLMKDMTSKTDMYRANAIRVLCRITD---GTLLTQIERY-------LKQAIVDKN-------------PVVASAALVS 164 (822)
Q Consensus 108 iNsl~kDl~~~n~~vr~lALr~l~~I~~---~~~~~~l~~~-------v~~~l~d~~-------------p~VRk~A~la 164 (822)
...|-+-|+++.+.+...|||.|..|.. ...+..+... +.+++..+. +.||..++--
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 4566677777777777788888887654 4566655432 333432221 3789888888
Q ss_pred HHhhcccChhHHH
Q 003409 165 GIHLLQTTPEIVK 177 (822)
Q Consensus 165 ~~~l~~~~pe~v~ 177 (822)
++.+....+..++
T Consensus 138 ~Lsfl~~~~~~~~ 150 (330)
T PF11707_consen 138 WLSFLSSGDPELK 150 (330)
T ss_pred HHHHHccCCHHHH
Confidence 8877765554444
No 216
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=31.44 E-value=98 Score=29.78 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=35.3
Q ss_pred eEEEEEEeecCCCcccceeEEEEEecCCCCCceEEEeccCCCCCCCCCceE
Q 003409 602 HVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQI 652 (822)
Q Consensus 602 ~ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~ip~~~L~~~~~~~~ 652 (822)
-+.+|+..+|+. ++.++|+++.=.... .+.++..-.+++.|+|++..++
T Consensus 86 mvsIql~ftN~s-~~~i~~I~i~~k~l~-~g~~i~~F~~I~~L~pg~s~t~ 134 (145)
T PF14796_consen 86 MVSIQLTFTNNS-DEPIKNIHIGEKKLP-AGMRIHEFPEIESLEPGASVTV 134 (145)
T ss_pred cEEEEEEEEecC-CCeecceEECCCCCC-CCcEeeccCcccccCCCCeEEE
Confidence 567888889999 568999888432211 2477777778899999986443
No 217
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=30.84 E-value=3.3e+02 Score=25.98 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhc
Q 003409 143 ERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQN 208 (822)
Q Consensus 143 ~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~ 208 (822)
...|.++-.+...-.--...+-+..++...+.--+.-+..+..-+..+|+.|+..||.+|-.+.++
T Consensus 6 ~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkN 71 (142)
T cd03569 6 DELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKN 71 (142)
T ss_pred HHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 344444444443333445556666666555544455566666667778899999999888777665
No 218
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=30.19 E-value=74 Score=28.86 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=28.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q 003409 145 YLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEA 186 (822)
Q Consensus 145 ~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~l 186 (822)
.+..++.|+++.||-.|+...+++ +|+..++-++++.+.
T Consensus 51 aLl~LL~hpn~~VRl~AA~~~L~~---~p~eA~~~Le~ia~~ 89 (106)
T PF09450_consen 51 ALLPLLKHPNMQVRLWAAAHTLRY---APEEARKVLEEIASS 89 (106)
T ss_dssp GGGGGGGSS-HHHHHHHHHTTTTT----HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChhHHHHHHHHHHHh---CHHHHHHHHHHHHHc
Confidence 456788999999999998877774 677777777776554
No 219
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=30.10 E-value=60 Score=21.66 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHH
Q 003409 121 MYRANAIRVLCRITDGTLLTQIERY 145 (822)
Q Consensus 121 ~vr~lALr~l~~I~~~~~~~~l~~~ 145 (822)
.+|-.|..+|+++++++-.+.+...
T Consensus 2 ~vR~~aa~aLg~~~~~~a~~~L~~~ 26 (30)
T smart00567 2 LVRHEAAFALGQLGDEEAVPALIKA 26 (30)
T ss_pred HHHHHHHHHHHHcCCHhHHHHHHHH
Confidence 4677788888888777666555443
No 220
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=29.93 E-value=4e+02 Score=23.72 Aligned_cols=33 Identities=24% Similarity=0.147 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Q 003409 361 EFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILR 393 (822)
Q Consensus 361 ~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~ 393 (822)
.+..+++..+-.++..-.+.+..++..++..|.
T Consensus 32 ~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~ 64 (113)
T PF02847_consen 32 SQHHEVVKVILECALEEKKSYREYYSKLLSHLC 64 (113)
T ss_dssp GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 455566666666655443333444444443333
No 221
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=29.87 E-value=1.7e+02 Score=26.47 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=45.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHH
Q 003409 146 LKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSK 215 (822)
Q Consensus 146 v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~ 215 (822)
|.++-.+..+---.....-+..+....++..+.....+..-+.++++-+++-||.+|..+.++-+..+..
T Consensus 5 v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~ 74 (115)
T cd00197 5 VEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQ 74 (115)
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHH
Confidence 4444444333333455555555555556666666666777777889999999999998888775554443
No 222
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=29.72 E-value=1.8e+02 Score=33.16 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=64.8
Q ss_pred CCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCC--ccchhHHHHHHHHhCCCCcchhhhhhhHHhhc
Q 003409 38 DPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRD--IGLRRMVYLMIKELSPSADEVIIVTSSLMKDM 115 (822)
Q Consensus 38 ~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d--~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl 115 (822)
+.|++.+|.++ ..-+=-+...| ++...-.....|-.|.- |-.||++-+++-..-.+.+.+-..-++|--|.
T Consensus 43 ~~pl~dykk~~-~sii~eyfstg------dv~vaa~dl~elg~seyhpyfvkrlvsmamdrhdkekemasvlls~lyadv 115 (645)
T KOG0403|consen 43 SDPLSDYKKKA-VSIIDEYFSTG------DVVVAASDLKELGSSEYHPYFVKRLVSMAMDRHDKEKEMASVLLSALYADV 115 (645)
T ss_pred CCcHHHHHHHH-HHHHHHHccCC------CchhhHHHHHHhccccccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHh
Confidence 34577777655 32222233333 44444444444444433 33799999988444334455666678999999
Q ss_pred CCCCHHHHHHHHHHhcC-----CCchhhHHHHHHHHHHhhcC
Q 003409 116 TSKTDMYRANAIRVLCR-----ITDGTLLTQIERYLKQAIVD 152 (822)
Q Consensus 116 ~~~n~~vr~lALr~l~~-----I~~~~~~~~l~~~v~~~l~d 152 (822)
-+|++..+|.- |.+.+ +..|+-+.-+.-.|-++++|
T Consensus 116 i~p~qir~gf~-~ll~s~ddl~vdipdavnvlalfiaraivd 156 (645)
T KOG0403|consen 116 IDPDQIRDGFI-RLLESADDLAVDIPDAVNVLALFIARAIVD 156 (645)
T ss_pred cChHHHHHHHH-HHHHhcccceecCchHHHHHHHHHHHHHHH
Confidence 99999888863 44544 33466666667777777766
No 223
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=29.31 E-value=8.8e+02 Score=27.49 Aligned_cols=165 Identities=15% Similarity=0.233 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHhhhhcC-HHHHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHhhcCCcchHHHHHHHH----HHH-HHh
Q 003409 343 SVDRLMKQITNFMSDIA-DEFKIVVVEAIRSLCLKFPLK--YRSLMNFLSNILREEGGFEYKKAIVDSI----VIL-IRD 414 (822)
Q Consensus 343 Nv~~Iv~eL~~y~~~~~-~~~k~~~v~aI~~la~k~~~~--~~~~v~~l~~lL~~~g~~~v~~~iv~~i----~~i-v~~ 414 (822)
+...+++++.......+ ...|.-..+.++.++.||++. .+.+++.+...+.......-....++.+ +.+ +|+
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 55568888887765444 556778889999999999765 3455555554441111111222333333 333 344
Q ss_pred CCchHHHHHHHHHHHhhcCCchhHHHhhhe-ecCCCCCCCC-------C---hHHHHHHHHh----hccCCCHHHHHHHH
Q 003409 415 IPDAKENGLLHLCEFIEDCEFTYLSTQILH-FLGTEGPKTS-------D---PSKYIRYIYN----RVHLENATVRAAAV 479 (822)
Q Consensus 415 ~p~~~~~~l~~L~~~l~~~~~~~~~~~i~w-iLGEy~~~~~-------~---~~~~i~~i~~----~~~~e~~~vr~~~l 479 (822)
+|. -...+..|++.+.+.+.....+..+. ++++..+... . -.+++..+.. .+-..+...|...+
T Consensus 266 ~~~-~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL 344 (415)
T PF12460_consen 266 HPL-ATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYL 344 (415)
T ss_pred Cch-HHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHH
Confidence 554 44578889999888655555555444 4455322211 1 1233333322 22233445888899
Q ss_pred HHHHHHhhcccc--c---hHHHHHHHHHHhcCCC
Q 003409 480 STLAKFGAMVDA--L---KPRVFVLLRRCLYDGD 508 (822)
Q Consensus 480 tal~K~~~~~~~--~---~~~i~~ll~~~~~d~d 508 (822)
+|++-+....|. + -+.++.++-.+++-.|
T Consensus 345 ~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~ 378 (415)
T PF12460_consen 345 TALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPD 378 (415)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999988887772 2 2467777777775444
No 224
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=29.25 E-value=5.5e+02 Score=25.11 Aligned_cols=77 Identities=9% Similarity=0.180 Sum_probs=49.2
Q ss_pred HHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Q 003409 333 TTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILI 412 (822)
Q Consensus 333 ~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv 412 (822)
.-++.=.+++|++.++++|...... +++.+..+++.|...+...|.....|...+.. +...- .+|...+++.+.+-+
T Consensus 5 ~~~lnkLs~~n~~~~~~~l~~~~~~-~~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~-l~~~~-~~f~~~ll~~~~~~f 81 (200)
T smart00543 5 KGLINKLSPSNFESIIKELLKLNNS-DKNLRKYILELIFEKAVEEPNFIPAYARLCAL-LNAKN-PDFGSLLLERLQEEF 81 (200)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHcCcchHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHH
Confidence 3344444689999999999986643 46799999999999998887655555444433 32211 135555555544433
No 225
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=28.73 E-value=9.6e+02 Score=27.73 Aligned_cols=263 Identities=14% Similarity=0.113 Sum_probs=0.0
Q ss_pred hHHHHHhhhcCCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCCCcc-hhh
Q 003409 28 AVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADE-VII 106 (822)
Q Consensus 28 ~~lqE~r~f~~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~-~lL 106 (822)
..+..+-+||...+++.-...++.+++.+...-..-..++...-+++ ++..|...+++ .--
T Consensus 156 ~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vld------------------aii~y~~iP~~sl~~ 217 (464)
T PF11864_consen 156 QFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLD------------------AIITYGDIPSESLSP 217 (464)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHH------------------HHHHcCcCChHHHHH
Q ss_pred hhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhh--cC----CCHHHHHHHHHHHHhhcccC--hhHHH-
Q 003409 107 VTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAI--VD----KNPVVASAALVSGIHLLQTT--PEIVK- 177 (822)
Q Consensus 107 viNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l--~d----~~p~VRk~A~la~~~l~~~~--pe~v~- 177 (822)
++..|-.=.+.. -+...|-++|.|+....+....+..+...| .+ +++.+-|=|+..+-++.-.+ ..+-.
T Consensus 218 ~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l 295 (464)
T PF11864_consen 218 CIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSL 295 (464)
T ss_pred HHHHHhhHhccc--ccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCccee
Q ss_pred ---H--HHHHHHHHhcCCChhHHHHHHHHHHHHH-hcChHH------------HHHHHHHhcCCCCCChhH---------
Q 003409 178 ---R--WSNEVQEAVQSRAALVQFHALALLHQIR-QNDRLA------------VSKLVTSLTRGTVRSPLA--------- 230 (822)
Q Consensus 178 ---~--~~~~l~~ll~d~~~~V~~~al~lL~~i~-~~d~~~------------i~~Li~~l~~~~~~~~w~--------- 230 (822)
- .++.+..++..+++.|.+..+.++..+- ++-... +..+...+. ....|.
T Consensus 296 ~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~ 372 (464)
T PF11864_consen 296 PFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQ---PFDSWYSNSSSLDQL 372 (464)
T ss_pred cccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhcc---ccccccccccchHHH
Q ss_pred ---HHHHHHHHHhhhhcccCCCC-CchhhHHHHHHHhccCChhhHHHHHHHHhhcc---CCChHhHhhHHHHHHHHh-cC
Q 003409 231 ---QCLLIRYTTQVIREAATTQT-GDRPFYDFLESCLRHKAEMVIFEAARAITELN---GVTNRELTPAITVLQLFL-SS 302 (822)
Q Consensus 231 ---~v~llr~l~~~~~~~~~d~~-~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~---~~~~~~~~~a~~~L~~~l-~s 302 (822)
...++..+..+.+.. +-. .++++++++.....+..++.+.-.+ ...-. ...+.-+......+..|. ..
T Consensus 373 ~~~~~~l~~~ie~L~~~~--~~~g~~~~~~~f~~~~~~~lp~s~~~~vl--~~~~~~~~Ps~~~W~~n~~~ll~~F~~~~ 448 (464)
T PF11864_consen 373 SSNLHSLLSSIESLYEQH--DFNGPKDKLFNFFERVHSYLPDSSALLVL--FYEERSCSPSNPDWLDNLQKLLDRFYNRD 448 (464)
T ss_pred HHHHHHHHHHHHHHHhCC--CcCccHHHHHHHHHHHhccCCHHHHHHHH--HHHhcccCCCChHHHHHHHHHHHHHhCCC
Q ss_pred CCchhHHHHHHhhcc
Q 003409 303 SKPVLRFAAVRTLNK 317 (822)
Q Consensus 303 ~~~n~ry~aL~~l~~ 317 (822)
+++++|..||+.+..
T Consensus 449 ~~~~vRi~aL~~l~e 463 (464)
T PF11864_consen 449 RRSEVRIKALDVLEE 463 (464)
T ss_pred CCchHHHHHHHHHhh
No 226
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=28.35 E-value=3.5e+02 Score=24.64 Aligned_cols=94 Identities=15% Similarity=0.232 Sum_probs=51.5
Q ss_pred HHHHHhhcCCC-----HHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcC-hHHHHHHH
Q 003409 144 RYLKQAIVDKN-----PVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQND-RLAVSKLV 217 (822)
Q Consensus 144 ~~v~~~l~d~~-----p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d-~~~i~~Li 217 (822)
..|+++-.+.. .+||+-...+ ...+.-+..+...+..-+.++|..|++-+|.+++.+-++. +.......
T Consensus 3 ~aV~kAT~~~~~~pk~k~v~~ii~~t-----~~~~~~~~~~~~~l~~Rl~~~~w~v~~K~LillH~llr~G~~~~~~~~~ 77 (117)
T cd03564 3 KAVKKATSHDEAPPKDKHVRKIIAGT-----SSSPASIPSFASALSRRLLDRNWVVVLKALILLHRLLREGHPSFLQELL 77 (117)
T ss_pred hHHHhhcCCCCCCCChHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34566665532 3555544443 2223334445555555566688889999999888876553 33222222
Q ss_pred HH--------hcCCCCCChhHHHHHHHHHHhhh
Q 003409 218 TS--------LTRGTVRSPLAQCLLIRYTTQVI 242 (822)
Q Consensus 218 ~~--------l~~~~~~~~w~~v~llr~l~~~~ 242 (822)
.. +.++.....|.+..++|--.+|+
T Consensus 78 ~~~~~l~l~~~~~~~~~~~~~~~~~Vr~Ya~yL 110 (117)
T cd03564 78 SRRGWLNLSNFLDKSSSLGYGYSAFIRAYARYL 110 (117)
T ss_pred HccCeeeccccccCCCCCchhhhHHHHHHHHHH
Confidence 21 11222224688888877666554
No 227
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=28.00 E-value=1.3e+02 Score=31.59 Aligned_cols=54 Identities=15% Similarity=0.240 Sum_probs=32.5
Q ss_pred hhcCCCHHHHHHHHHHHHhhcccChhHH-------H------HHHHHHHHHhcCCChhHHHHHHHHH
Q 003409 149 AIVDKNPVVASAALVSGIHLLQTTPEIV-------K------RWSNEVQEAVQSRAALVQFHALALL 202 (822)
Q Consensus 149 ~l~d~~p~VRk~A~la~~~l~~~~pe~v-------~------~~~~~l~~ll~d~~~~V~~~al~lL 202 (822)
++.|.+|.|.|.|+.|+..+|+..-+.+ . .+-+.+...+.+.+++|-.+|+-.+
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFl 67 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFL 67 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 4678999999999999988876432222 1 1223344445555666666655443
No 228
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=27.97 E-value=1.9e+02 Score=27.63 Aligned_cols=30 Identities=13% Similarity=0.116 Sum_probs=24.3
Q ss_pred EeecceEEEEEEeecCCCcccceeEEEEEec
Q 003409 597 HIFDRHVVFQYNCTNTIPEQLLENVTVIVDA 627 (822)
Q Consensus 597 h~~~~~ivl~f~v~Nt~~d~~L~nv~v~l~~ 627 (822)
-.|.+.+++.+.|+|+. +.+++++.+++.-
T Consensus 58 l~~~~~~~v~g~V~N~g-~~~i~~c~i~~~l 87 (149)
T PF09624_consen 58 LQYSESFYVDGTVTNTG-KFTIKKCKITVKL 87 (149)
T ss_pred eeeccEEEEEEEEEECC-CCEeeEEEEEEEE
Confidence 34667899999999999 5689999886664
No 229
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=26.38 E-value=5.7e+02 Score=26.71 Aligned_cols=50 Identities=6% Similarity=0.213 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhhhc--CHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhh
Q 003409 345 DRLMKQITNFMSDI--ADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILRE 394 (822)
Q Consensus 345 ~~Iv~eL~~y~~~~--~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~ 394 (822)
..+++.|..++.+. +...-..++.+++.++.+=|.-...++.++..+-..
T Consensus 113 ~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~~~~ 164 (239)
T PF11935_consen 113 NGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSFNPN 164 (239)
T ss_dssp HHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcc
Confidence 35777777776543 456667777888888887777777777777765543
No 230
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=25.98 E-value=4.1e+02 Score=24.95 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=33.6
Q ss_pred HHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChH
Q 003409 160 AALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL 211 (822)
Q Consensus 160 ~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~ 211 (822)
...+-+..++...++-.+..+..+..-+..+||.|+..|+.+|-.+.++-+.
T Consensus 19 ~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~ 70 (133)
T smart00288 19 ELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGS 70 (133)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH
Confidence 4455555555555555555566666667778888888888888777665333
No 231
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=25.58 E-value=3.5e+02 Score=25.11 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhcc-cChhHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 003409 155 PVVASAALVSGIHLLQ-TTPEIVKRWSNEVQEAVQSRAALVQFHALALLH 203 (822)
Q Consensus 155 p~VRk~A~la~~~l~~-~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~ 203 (822)
++||++.+.++..+.. ..|+.-..+++.+..++.. ++......+.+|.
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~ 50 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILR 50 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHH
Confidence 6899999999887754 3344433444444444444 3333333444443
No 232
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=24.82 E-value=4.5e+02 Score=25.21 Aligned_cols=66 Identities=14% Similarity=0.160 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccCh-----hHH-HHHHHHHHHHhcC-CChhHHHHHHHHHHH
Q 003409 139 LTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTP-----EIV-KRWSNEVQEAVQS-RAALVQFHALALLHQ 204 (822)
Q Consensus 139 ~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~p-----e~v-~~~~~~l~~ll~d-~~~~V~~~al~lL~~ 204 (822)
.....+.|++-+.+++|-|--.|+.-+--+.+... ++. ++|++++..++.+ .++.|.--.+.++.+
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~ 107 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQ 107 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 34555566666666666665554443322322222 222 2466666666665 344454444444444
No 233
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=24.26 E-value=2e+02 Score=26.23 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=35.4
Q ss_pred EEEEEeecCCCcccceeEEEEEecCCCCCceEEEeccCCCCCCCCCceEEEEEeeCCCCCceeeeeceeeeEEee
Q 003409 604 VFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKE 678 (822)
Q Consensus 604 vl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~ip~~~L~~~~~~~~~v~~~~~~~~~~~~~f~~~L~f~v~~ 678 (822)
.+.+.+.|+.++ =..+++.+...++ +++....+.-++++++.....+.++.+......++- .+.|.+.+
T Consensus 34 ~Y~lkl~Nkt~~--~~~~~i~~~g~~~--~~l~~~~~~i~v~~g~~~~~~v~v~~p~~~~~~~~~--~i~f~v~~ 102 (118)
T PF11614_consen 34 QYTLKLTNKTNQ--PRTYTISVEGLPG--AELQGPENTITVPPGETREVPVFVTAPPDALKSGST--PITFTVTD 102 (118)
T ss_dssp EEEEEEEE-SSS---EEEEEEEES-SS---EE-ES--EEEE-TT-EEEEEEEEEE-GGG-SSSEE--EEEEEEEE
T ss_pred EEEEEEEECCCC--CEEEEEEEecCCC--eEEECCCcceEECCCCEEEEEEEEEECHHHccCCCe--eEEEEEEE
Confidence 456778899864 3347777765444 776433334478899987777777776533222211 44577763
No 234
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=24.18 E-value=2.2e+02 Score=26.75 Aligned_cols=75 Identities=20% Similarity=0.105 Sum_probs=47.7
Q ss_pred HHHHHHhCCCCcc-hhhhhhhHHhhcCCCCHHHHHHHHHHhcCC---CchhhH-----HHHHHHHHHhhcCCC--HHHHH
Q 003409 91 YLMIKELSPSADE-VIIVTSSLMKDMTSKTDMYRANAIRVLCRI---TDGTLL-----TQIERYLKQAIVDKN--PVVAS 159 (822)
Q Consensus 91 YL~l~~~~~~~~~-~lLviNsl~kDl~~~n~~vr~lALr~l~~I---~~~~~~-----~~l~~~v~~~l~d~~--p~VRk 159 (822)
-+.++......+. .--++.+|+|=|+++||.+.-.||+.|-.+ ++..+. ..+...+.+.+.++. |-||+
T Consensus 21 ~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~ 100 (133)
T smart00288 21 ILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKK 100 (133)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHH
Confidence 3555566554433 788999999999999999999998877543 122221 124455556665532 34777
Q ss_pred HHHHHH
Q 003409 160 AALVSG 165 (822)
Q Consensus 160 ~A~la~ 165 (822)
+++..+
T Consensus 101 kil~li 106 (133)
T smart00288 101 RILELI 106 (133)
T ss_pred HHHHHH
Confidence 766544
No 235
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=24.03 E-value=9.8e+02 Score=26.23 Aligned_cols=86 Identities=16% Similarity=0.103 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHh-cChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCC-------CCC
Q 003409 180 SNEVQEAVQSRAALVQFHALALLHQIRQ-NDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATT-------QTG 251 (822)
Q Consensus 180 ~~~l~~ll~d~~~~V~~~al~lL~~i~~-~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d-------~~~ 251 (822)
+..+...|+...+.....++.+|.+|.. +.+.....++..++ |..-.+-|++..--.....+ ++.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd-------~~~~~l~kll~~~~~~~~~~~~~~~~~~si 130 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFD-------FSLKSLPKLLTPRKKEKEKDSESSKSKPSI 130 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcC-------CchhhHHHHhccccccccccccccccCcCH
Confidence 5556666766666667789999999988 55555666666654 22222333332100000000 133
Q ss_pred chhhHHHHHHHhccCChhhHH
Q 003409 252 DRPFYDFLESCLRHKAEMVIF 272 (822)
Q Consensus 252 ~~~l~~~l~~~L~~~~~aV~~ 272 (822)
+..+++++..+|.+.++.+.-
T Consensus 131 R~~fI~F~Lsfl~~~~~~~~~ 151 (330)
T PF11707_consen 131 RTNFIRFWLSFLSSGDPELKR 151 (330)
T ss_pred HHHHHHHHHHHHccCCHHHHH
Confidence 445677777777776665543
No 236
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.89 E-value=6.6e+02 Score=30.09 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHhCcccHHHHHHHHHHHHhhcCC--------------cchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCCc
Q 003409 370 IRSLCLKFPLKYRSLMNFLSNILREEGG--------------FEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEF 435 (822)
Q Consensus 370 I~~la~k~~~~~~~~v~~l~~lL~~~g~--------------~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~~ 435 (822)
|-.|+++||++ .+++|.++.+.+.|- ..|..-..+.+..++...++..+..+..|++..-..++
T Consensus 153 iy~Lae~~p~~--l~L~faik~IsdaG~~~Ei~s~~taa~~~~VF~~vl~~~i~~~~~~~~d~~~~~~~~l~k~~C~seh 230 (584)
T PF04858_consen 153 IYELAERHPDC--LFLNFAIKLISDAGYQHEITSVSTAAQQFEVFSRVLKDSISRFLAAGEDELQEAIAELKKMCCHSEH 230 (584)
T ss_pred HHHHHHHCCCC--HHHHHHHHHHHHcchHHHHHhHHHHHHhHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhhcCCc
Q ss_pred hhH-HHhhheecCCCCCCCCChHHHHHHHHhhccCCCHHHH------------HHHHHHHHHHhhccccchHHHHHHHHH
Q 003409 436 TYL-STQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVR------------AAAVSTLAKFGAMVDALKPRVFVLLRR 502 (822)
Q Consensus 436 ~~~-~~~i~wiLGEy~~~~~~~~~~i~~i~~~~~~e~~~vr------------~~~ltal~K~~~~~~~~~~~i~~ll~~ 502 (822)
+-+ .+.++..|++..+........-+.|-......+..+. ..+.+++..+..+..--...|..|.+.
T Consensus 231 TYlyaQ~lL~~L~~~~~~~~~~~rlsqELe~~A~~~~~~vt~i~~aL~~s~~~p~a~~ai~smLs~~~l~paDI~~Ly~~ 310 (584)
T PF04858_consen 231 TYLYAQALLHELSQESDGGSAMRRLSQELEREAAKRGHDVTDITLALNGSSSYPEACQAIASMLSSNALNPADITKLYRM 310 (584)
T ss_pred hHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHhcCccCchHHHHHHHHHhcCCCCHHHHHHHHHH
Q ss_pred HhcCC
Q 003409 503 CLYDG 507 (822)
Q Consensus 503 ~~~d~ 507 (822)
|..+.
T Consensus 311 Y~~~~ 315 (584)
T PF04858_consen 311 YSSPD 315 (584)
T ss_pred hccCC
No 237
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=23.64 E-value=2.2e+02 Score=25.72 Aligned_cols=61 Identities=21% Similarity=0.146 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhCcccHHHHHH--HHHHHHh----hcCCcchHHHHHHHHHHHHHhCCchHHHH
Q 003409 362 FKIVVVEAIRSLCLKFPLKYRSLMN--FLSNILR----EEGGFEYKKAIVDSIVILIRDIPDAKENG 422 (822)
Q Consensus 362 ~k~~~v~aI~~la~k~~~~~~~~v~--~l~~lL~----~~g~~~v~~~iv~~i~~iv~~~p~~~~~~ 422 (822)
||..+|+-|+.||-+.+..-+.+.+ -+--+|. ++...-+++-++-+|+.+...+|+-++.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 7889999999999887654443322 1112222 23333366777778888888888777643
No 238
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=23.63 E-value=1.5e+02 Score=29.20 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHHHHHHHhccC
Q 003409 268 EMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTG 339 (822)
Q Consensus 268 ~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~ 339 (822)
..+.++|++++-.+-+... -+..+++.++ .+...+ .+|..++..+|+.++++|..+|
T Consensus 130 ~~~~~~~l~Clkal~n~~~--------G~~~v~~~~~-~v~~i~------~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 130 IDIEHECLRCLKALMNTKY--------GLEAVLSHPD-SVNLIA------LSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHTSSHH--------HHHHHHCSSS-HHHHHH------HT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHH--------HHHHHHcCcH-HHHHHH------HHHCCCCHHHHHHHHHHHHHHH
Confidence 3577777777776654321 1223344332 334433 3567788899999999998765
No 239
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=23.18 E-value=2.8e+02 Score=26.47 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHHHHhCcccHH-HHHHHHHHHHhhcC
Q 003409 359 ADEFKIVVVEAIRSLCLKFPLKYR-SLMNFLSNILREEG 396 (822)
Q Consensus 359 ~~~~k~~~v~aI~~la~k~~~~~~-~~v~~l~~lL~~~g 396 (822)
+.+.|..+..-|...+..|+++.. .++.-+.+.|...|
T Consensus 99 ~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~~G 137 (141)
T cd03565 99 PTIVQEKVLALIQAWADAFRGSPDLTGVVEVYEELKKKG 137 (141)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHcC
Confidence 346777777777777777764322 33444455555443
No 240
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.93 E-value=1.4e+03 Score=30.33 Aligned_cols=93 Identities=14% Similarity=0.101 Sum_probs=57.5
Q ss_pred hhcCCCCHHHHHHHHHHhcCCCchh-------hHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q 003409 113 KDMTSKTDMYRANAIRVLCRITDGT-------LLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQE 185 (822)
Q Consensus 113 kDl~~~n~~vr~lALr~l~~I~~~~-------~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ 185 (822)
|-|.-+|+.-+.-||.-++.+.++. +.+.....+.+++.|.++-||...--.+.++..+....+-.|+..+..
T Consensus 48 kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~ 127 (1312)
T KOG0803|consen 48 KKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIP 127 (1312)
T ss_pred HHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhh
Confidence 4445577778888888888776544 244455667888899999999888888777765444443344443322
Q ss_pred ----HhcCCChhHHHHHHHHHHHH
Q 003409 186 ----AVQSRAALVQFHALALLHQI 205 (822)
Q Consensus 186 ----ll~d~~~~V~~~al~lL~~i 205 (822)
..+|.+..|...|...+-..
T Consensus 128 ~wl~~~~d~~~~vs~aa~~sf~~~ 151 (1312)
T KOG0803|consen 128 PWLGGQFDLDYPVSEAAKASFKDG 151 (1312)
T ss_pred hhhheecccchHHHHHHHHHHHhh
Confidence 22344555655555544433
No 241
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=22.91 E-value=5e+02 Score=25.37 Aligned_cols=28 Identities=25% Similarity=0.057 Sum_probs=14.0
Q ss_pred hHhHhhHHHHHHHHhcCCCchhHHHHHH
Q 003409 286 NRELTPAITVLQLFLSSSKPVLRFAAVR 313 (822)
Q Consensus 286 ~~~~~~a~~~L~~~l~s~~~n~ry~aL~ 313 (822)
+.+++..+-.|++-+-+++...|-.|+.
T Consensus 127 ~~lrd~lilvLRKamf~r~~~~R~~Av~ 154 (158)
T PF14676_consen 127 PSLRDSLILVLRKAMFSRELDARQMAVN 154 (158)
T ss_dssp HHHHHHHHHHHHHHTT-SSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 4455555555555555555555555543
No 242
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=22.28 E-value=9.4e+02 Score=25.40 Aligned_cols=36 Identities=28% Similarity=0.200 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHhhccccchHHHHHHHHHHhcC
Q 003409 471 NATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYD 506 (822)
Q Consensus 471 ~~~vr~~~ltal~K~~~~~~~~~~~i~~ll~~~~~d 506 (822)
+.-+|+++++|++.++...|.-|+.++..|...+..
T Consensus 126 ~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~ 161 (249)
T PF06685_consen 126 DEYVRMAAISALAFLVHEGPISREEVIQYFRELLNY 161 (249)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999988887788888877777654
No 243
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.84 E-value=9.5e+02 Score=27.10 Aligned_cols=108 Identities=23% Similarity=0.248 Sum_probs=63.9
Q ss_pred HHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHHHHHHH--
Q 003409 258 FLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTL-- 335 (822)
Q Consensus 258 ~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL-- 335 (822)
=|...+.|-|.-|.-+|...+-.+-.+.+..+.. -+.++-.-.+.++.|.|.++|.....++
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~----------------~~~~ll~~~~~~i~D~~~~vR~~~~qll~~ 125 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQS----------------HLYALLQKLRELILDDDSLVRDALYQLLDS 125 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHH----------------HHHHHHHHhhhhhcCccccHHHHHHHHHHH
Confidence 3445567777777777777665442111111110 1111111112566777777776655554
Q ss_pred --hccCCcc---hHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccH
Q 003409 336 --LKTGNES---SVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKY 381 (822)
Q Consensus 336 --~~l~ne~---Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~ 381 (822)
+.+|-+. ++.-++..+..-|+.+..+.+.+...-...+++.||+..
T Consensus 126 ~i~~~~~e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 126 LILPACKEDQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred HHhhcchhhhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 3444444 444455555556788899999999999999999998754
No 244
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=21.38 E-value=5.8e+02 Score=24.66 Aligned_cols=135 Identities=16% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHhhcC--CCHHHHHHHHHHHHhhcccChhHHH-HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHH----------
Q 003409 146 LKQAIVD--KNPVVASAALVSGIHLLQTTPEIVK-RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLA---------- 212 (822)
Q Consensus 146 v~~~l~d--~~p~VRk~A~la~~~l~~~~pe~v~-~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~---------- 212 (822)
+.+.+.. ..+-||..|.+++.|++...++... .+.+-+...+.+.+..-...++.++-.+-+-.|..
T Consensus 8 lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~ 87 (157)
T PF11701_consen 8 LLTSLDMLRQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGF 87 (157)
T ss_dssp HHHHHHCTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTH
T ss_pred HHHHhcccCCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhH
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHh-ccCChh-hHHHHHHHHhhc
Q 003409 213 VSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCL-RHKAEM-VIFEAARAITEL 281 (822)
Q Consensus 213 i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L-~~~~~a-V~~ea~~~i~~l 281 (822)
...+++..... ..++-.|..+++++..-.-...--....+...+.|.... ++.++. |..-|+-.++.+
T Consensus 88 ~~~l~~~~~~~-~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 88 LESLLPLASRK-SKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHHHHHHH-C-TS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHHHHHhcc-cCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
No 245
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=21.25 E-value=7.4e+02 Score=29.04 Aligned_cols=166 Identities=15% Similarity=0.205 Sum_probs=95.7
Q ss_pred CCCchhhHHHHHHHHhccCCcchHHHHHHHHHH-hh--h--------hcCHHHHHHHHHHHHHH---HHhCcccHHHHHH
Q 003409 321 SDQNRSIATLAITTLLKTGNESSVDRLMKQITN-FM--S--------DIADEFKIVVVEAIRSL---CLKFPLKYRSLMN 386 (822)
Q Consensus 321 ~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~-y~--~--------~~~~~~k~~~v~aI~~l---a~k~~~~~~~~v~ 386 (822)
.|++.+|...|-++|=++...=+=..+|+.|.. |+ . -.+..+|..++.-+.+- +..+|.. +.
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~~----~~ 322 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPNI----LQ 322 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCccH----HH
Confidence 677888999999999888766454567776665 55 2 35667777766665543 2233333 33
Q ss_pred HHHHHHhhc-CCcchHHHHHHHH---HHHHHhCCc-----hHHHHHHHHHHHhhc-------CCchhHHHhhheecCCCC
Q 003409 387 FLSNILREE-GGFEYKKAIVDSI---VILIRDIPD-----AKENGLLHLCEFIED-------CEFTYLSTQILHFLGTEG 450 (822)
Q Consensus 387 ~l~~lL~~~-g~~~v~~~iv~~i---~~iv~~~p~-----~~~~~l~~L~~~l~~-------~~~~~~~~~i~wiLGEy~ 450 (822)
.+..-|... ....++......+ .++++..+. ++..+...+...+++ ....+.+..+--.||.-+
T Consensus 323 i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~ 402 (501)
T PF13001_consen 323 IVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLA 402 (501)
T ss_pred HHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHH
Confidence 333333222 1234555556666 666655443 233333344444420 112233333333344433
Q ss_pred CC----CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhccc
Q 003409 451 PK----TSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVD 490 (822)
Q Consensus 451 ~~----~~~~~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~~ 490 (822)
.. ..+-..+++.+++.+-.+.+++|.++-.|+.-+...++
T Consensus 403 ~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 403 KRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred ccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 33 23446788899998888889999988888877776654
No 246
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=21.02 E-value=2.5e+02 Score=33.46 Aligned_cols=128 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHhhhhcC-HHHHHHHHHHHHHHHH------hCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHH
Q 003409 348 MKQITNFMSDIA-DEFKIVVVEAIRSLCL------KFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKE 420 (822)
Q Consensus 348 v~eL~~y~~~~~-~~~k~~~v~aI~~la~------k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~ 420 (822)
++|.+-|+...+ ++.++..+.++++... .+-+...|.+.-+..-++....-.| .+.++++++
T Consensus 463 mRevLvyLthL~v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF---~VnviKdLL-------- 531 (1053)
T COG5101 463 MREVLVYLTHLIVDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRF---FVNVIKDLL-------- 531 (1053)
T ss_pred HhhHHHHHhhhhhhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHH---HHHHHHHHH--------
Q ss_pred HHHHHHHHHhhcCCchhHHHh-hheecCCCCCCCCChHHHHHHHHhhcc----CCCHHHHHHHHHHHHHHhhccc
Q 003409 421 NGLLHLCEFIEDCEFTYLSTQ-ILHFLGTEGPKTSDPSKYIRYIYNRVH----LENATVRAAAVSTLAKFGAMVD 490 (822)
Q Consensus 421 ~~l~~L~~~l~~~~~~~~~~~-i~wiLGEy~~~~~~~~~~i~~i~~~~~----~e~~~vr~~~ltal~K~~~~~~ 490 (822)
.||+.=..-+...+.+. +.|++|.|.........+++...+.+. ..+..|+-++-.++.|++.+||
T Consensus 532 ----~LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~ 602 (1053)
T COG5101 532 ----ALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCP 602 (1053)
T ss_pred ----HHHHHhhcCCcchhhecceeeeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCc
No 247
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=21.01 E-value=1.5e+02 Score=26.74 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.6
Q ss_pred cCCCHHHHHHHHHHHHhhcccChhH
Q 003409 151 VDKNPVVASAALVSGIHLLQTTPEI 175 (822)
Q Consensus 151 ~d~~p~VRk~A~la~~~l~~~~pe~ 175 (822)
.+.+||+|--|++|+-.|...+|+-
T Consensus 40 D~~nP~irEwai~aiRnL~e~n~eN 64 (102)
T PF09759_consen 40 DDHNPFIREWAIFAIRNLCEGNPEN 64 (102)
T ss_pred CcccHHHHHHHHHHHHHHHhCCHHH
Confidence 4589999999999999999888753
No 248
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=20.73 E-value=1.5e+02 Score=20.69 Aligned_cols=27 Identities=15% Similarity=-0.031 Sum_probs=20.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHhh
Q 003409 142 IERYLKQAIVDKNPVVASAALVSGIHL 168 (822)
Q Consensus 142 l~~~v~~~l~d~~p~VRk~A~la~~~l 168 (822)
.++.+.+++.+.++-+++.|+.++..+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 455666777778888999988888765
No 249
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=20.72 E-value=4e+02 Score=24.86 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCch
Q 003409 367 VEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDA 418 (822)
Q Consensus 367 v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~ 418 (822)
..-|+.++-.-+.....++++|.+-|.+.|.+ |+--+...|..++++-++.
T Consensus 22 ~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~h-VK~K~Lrilk~l~~~G~~~ 72 (122)
T cd03572 22 YEEIAKLTRKSVGSCQELLEYLLKRLKRSSPH-VKLKVLKIIKHLCEKGNSD 72 (122)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCc-chHHHHHHHHHHHhhCCHH
Confidence 34556666665567778899999999886654 7777788888888776543
Done!