Query 003409
Match_columns 822
No_of_seqs 247 out of 1251
Neff 7.9
Searched_HMMs 29240
Date Tue Mar 26 00:15:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_A Adaptor protein complex 100.0 5.4E-76 1.8E-80 697.4 29.9 496 29-533 36-613 (621)
2 3tjz_B Coatomer subunit gamma; 100.0 1E-73 3.6E-78 623.4 21.9 337 1-342 1-355 (355)
3 1w63_A Adapter-related protein 100.0 1.9E-67 6.6E-72 625.6 35.3 481 25-517 28-572 (618)
4 2vgl_B AP-2 complex subunit be 100.0 3.1E-65 1.1E-69 604.1 40.4 487 19-519 4-529 (591)
5 1r4x_A Gamma1-COP, coatomer ga 100.0 1.5E-63 5.1E-68 515.8 30.0 264 553-820 9-275 (275)
6 1pzd_A Coatomer gamma subunit; 100.0 1.3E-63 4.4E-68 530.8 30.4 301 513-820 18-322 (322)
7 3hs8_A Adaptor protein complex 99.9 1.1E-24 3.9E-29 228.0 23.6 222 570-821 39-271 (273)
8 1kyf_A Alpha-adaptin C; protei 99.9 3.3E-22 1.1E-26 207.6 25.4 222 570-821 13-245 (247)
9 1w63_A Adapter-related protein 99.5 6.6E-13 2.3E-17 157.2 22.3 426 50-480 86-570 (618)
10 1b3u_A Protein (protein phosph 99.4 2.5E-11 8.6E-16 141.7 26.8 434 69-508 86-571 (588)
11 2vgl_B AP-2 complex subunit be 99.4 1.2E-11 4.3E-16 145.6 22.4 393 75-504 18-436 (591)
12 1b3u_A Protein (protein phosph 99.4 6.2E-11 2.1E-15 138.3 27.2 409 71-486 127-586 (588)
13 4fdd_A Transportin-1; heat rep 99.3 1.6E-08 5.4E-13 124.2 40.1 340 25-374 87-511 (852)
14 2jdq_A Importin alpha-1 subuni 99.2 1.7E-09 5.7E-14 121.9 28.5 267 106-376 20-348 (450)
15 4fdd_A Transportin-1; heat rep 99.2 5.1E-09 1.7E-13 128.6 32.6 382 75-489 18-473 (852)
16 1oyz_A Hypothetical protein YI 99.2 4.9E-10 1.7E-14 118.5 18.8 250 106-408 23-277 (280)
17 1wa5_B Importin alpha subunit; 99.1 1.9E-08 6.4E-13 116.6 27.7 265 108-377 89-414 (530)
18 4b8j_A Importin subunit alpha- 99.1 4.3E-08 1.5E-12 113.4 30.3 356 106-488 74-497 (528)
19 2vgl_A Adaptor protein complex 99.1 2.2E-08 7.4E-13 118.4 27.4 333 84-432 57-452 (621)
20 2z6g_A B-catenin; FULL-length, 99.1 1.4E-08 4.6E-13 123.4 25.5 338 108-451 117-518 (780)
21 1wa5_B Importin alpha subunit; 99.0 5.9E-08 2E-12 112.4 26.4 300 143-450 89-456 (530)
22 2bpt_A Importin beta-1 subunit 99.0 4.2E-07 1.4E-11 111.0 34.9 455 46-507 111-692 (861)
23 2jdq_A Importin alpha-1 subuni 99.0 1.3E-07 4.6E-12 106.2 27.2 301 72-378 22-393 (450)
24 4b8j_A Importin subunit alpha- 98.9 2.5E-07 8.5E-12 106.9 29.3 318 143-487 76-443 (528)
25 2bpt_A Importin beta-1 subunit 98.9 1.9E-07 6.6E-12 114.0 28.6 392 80-508 15-511 (861)
26 1qgr_A Protein (importin beta 98.9 1.4E-06 5E-11 106.4 36.4 432 68-505 126-744 (876)
27 3ul1_B Importin subunit alpha- 98.9 1.2E-06 4.1E-11 101.0 32.9 268 108-377 59-389 (510)
28 1jdh_A Beta-catenin; beta-cate 98.9 1.1E-06 3.7E-11 101.1 32.5 333 107-448 18-423 (529)
29 1u6g_C TIP120 protein, CAND1; 98.9 1E-06 3.5E-11 112.4 35.1 430 72-505 8-620 (1230)
30 3now_A UNC-45 protein, SD10334 98.9 1.2E-07 4E-12 113.8 24.4 335 71-413 291-737 (810)
31 2z6h_A Catenin beta-1, beta-ca 98.9 8.8E-07 3E-11 105.2 31.5 333 107-448 15-420 (644)
32 2z6g_A B-catenin; FULL-length, 98.8 3.7E-07 1.3E-11 110.8 26.9 363 73-448 118-556 (780)
33 3tpo_A Importin subunit alpha- 98.8 1.2E-06 4.2E-11 101.4 29.4 270 106-377 76-408 (529)
34 1oyz_A Hypothetical protein YI 98.7 5E-07 1.7E-11 95.2 20.3 249 74-371 27-278 (280)
35 3ltm_A Alpha-REP4; protein eng 98.7 4.1E-07 1.4E-11 91.6 18.3 179 108-316 21-199 (211)
36 1qgr_A Protein (importin beta 98.7 3.6E-06 1.2E-10 102.9 29.8 388 113-508 8-518 (876)
37 3ltj_A Alpharep-4; protein eng 98.7 1.2E-06 4E-11 87.5 19.2 180 107-316 15-194 (201)
38 3now_A UNC-45 protein, SD10334 98.6 1.8E-05 6.1E-10 95.0 31.8 335 108-451 292-737 (810)
39 1jdh_A Beta-catenin; beta-cate 98.6 5.5E-06 1.9E-10 95.1 26.7 313 134-452 10-386 (529)
40 1ibr_B P95, importin beta-1 su 98.6 1.7E-05 6E-10 88.9 29.9 353 110-490 5-440 (462)
41 2z6h_A Catenin beta-1, beta-ca 98.6 6.8E-06 2.3E-10 97.4 27.6 311 135-451 8-382 (644)
42 3ul1_B Importin subunit alpha- 98.6 1.5E-05 5.1E-10 91.8 29.5 350 143-510 59-483 (510)
43 1ibr_B P95, importin beta-1 su 98.6 8.5E-07 2.9E-11 99.8 16.9 350 77-453 8-439 (462)
44 1u6g_C TIP120 protein, CAND1; 98.5 1.5E-05 5E-10 101.7 28.4 376 109-488 9-507 (1230)
45 4hxt_A De novo protein OR329; 98.4 2.8E-05 9.7E-10 79.5 23.6 67 143-209 4-75 (252)
46 3tpo_A Importin subunit alpha- 98.4 7.1E-05 2.4E-09 86.5 29.3 350 143-510 78-502 (529)
47 3tjz_B Coatomer subunit gamma; 98.4 1E-06 3.4E-11 95.9 12.6 261 49-316 83-349 (355)
48 3ltm_A Alpha-REP4; protein eng 98.4 6E-06 2.1E-10 82.9 17.0 187 143-379 21-207 (211)
49 3ltj_A Alpharep-4; protein eng 98.4 2.1E-05 7.1E-10 78.3 19.5 185 69-282 13-197 (201)
50 4db8_A Armadillo-repeat protei 98.4 1.3E-05 4.5E-10 82.5 18.3 213 108-374 14-250 (252)
51 4hxt_A De novo protein OR329; 98.3 3.7E-05 1.3E-09 78.7 21.4 202 109-316 5-237 (252)
52 2g30_A AP-2 complex subunit be 98.2 9.4E-05 3.2E-09 76.6 20.7 203 593-820 47-253 (258)
53 4db8_A Armadillo-repeat protei 98.1 8.5E-05 2.9E-09 76.3 17.2 142 70-211 12-171 (252)
54 4db6_A Armadillo repeat protei 97.9 0.00048 1.6E-08 68.5 19.1 179 70-282 12-208 (210)
55 3b2a_A TON_1937, putative unch 97.9 7.5E-05 2.6E-09 74.7 12.3 180 179-376 34-219 (265)
56 4db6_A Armadillo repeat protei 97.9 0.00059 2E-08 67.8 18.9 183 139-375 10-209 (210)
57 1te4_A Conserved protein MTH18 97.9 1.5E-05 5.2E-10 73.9 6.0 115 72-202 14-128 (131)
58 2db0_A 253AA long hypothetical 97.8 0.0061 2.1E-07 58.6 22.9 207 141-375 32-246 (253)
59 2db0_A 253AA long hypothetical 97.8 0.00044 1.5E-08 66.4 14.7 183 318-504 39-227 (253)
60 1xm9_A Plakophilin 1; armadill 97.7 0.0078 2.7E-07 67.9 25.8 101 108-208 4-117 (457)
61 3nmw_A APC variant protein; AR 97.6 0.004 1.4E-07 67.9 21.5 255 115-420 41-341 (354)
62 1wa5_C Importin alpha RE-expor 97.6 0.035 1.2E-06 68.7 32.0 124 362-487 377-525 (960)
63 1te4_A Conserved protein MTH18 97.5 0.00013 4.4E-09 67.5 7.1 113 108-236 14-126 (131)
64 2x19_B Importin-13; nuclear tr 97.5 0.0067 2.3E-07 75.0 24.4 127 362-490 423-559 (963)
65 4ady_A RPN2, 26S proteasome re 97.5 0.012 3.9E-07 71.2 24.8 272 117-432 406-699 (963)
66 2qk2_A LP04448P; mini spindles 97.4 0.0017 5.8E-08 66.5 14.8 168 109-281 18-203 (242)
67 1xm9_A Plakophilin 1; armadill 97.3 0.05 1.7E-06 61.2 26.8 298 143-449 4-404 (457)
68 3nmz_A APC variant protein; pr 97.3 0.012 4E-07 66.3 21.0 236 122-382 164-457 (458)
69 2qk2_A LP04448P; mini spindles 97.3 0.0029 1E-07 64.7 14.6 166 42-207 28-205 (242)
70 3l6x_A Catenin delta-1; cateni 97.3 0.045 1.5E-06 63.3 25.8 102 348-450 357-475 (584)
71 3l6x_A Catenin delta-1; cateni 97.2 0.18 6E-06 58.4 30.1 309 143-491 50-436 (584)
72 4ady_A RPN2, 26S proteasome re 97.2 0.0096 3.3E-07 71.9 18.8 240 120-393 451-698 (963)
73 3nmz_A APC variant protein; pr 97.1 0.059 2E-06 60.6 23.2 57 255-311 244-307 (458)
74 3opb_A SWI5-dependent HO expre 97.1 0.17 5.8E-06 59.9 27.7 194 255-451 458-731 (778)
75 3b2a_A TON_1937, putative unch 97.0 0.025 8.6E-07 56.7 16.7 176 141-341 33-219 (265)
76 2x1g_F Cadmus; transport prote 96.9 0.017 5.9E-07 71.4 19.3 139 361-502 436-588 (971)
77 3opb_A SWI5-dependent HO expre 96.9 0.93 3.2E-05 53.7 32.6 378 109-489 171-685 (778)
78 2qk1_A Protein STU2; STU2P, XM 96.9 0.033 1.1E-06 57.3 17.6 29 253-281 190-218 (249)
79 2qk1_A Protein STU2; STU2P, XM 96.7 0.0087 3E-07 61.8 11.6 169 320-490 25-223 (249)
80 1xqr_A HSPBP1 protein; armadil 96.6 0.012 4.1E-07 62.4 12.5 161 288-450 56-237 (296)
81 1xqr_A HSPBP1 protein; armadil 96.6 0.014 4.7E-07 61.9 12.2 135 73-207 84-238 (296)
82 3ibv_A Exportin-T; karyopherin 96.5 0.12 3.9E-06 64.0 21.7 71 433-503 506-583 (980)
83 1wa5_C Importin alpha RE-expor 96.4 0.93 3.2E-05 55.8 29.2 90 81-170 416-525 (960)
84 3nmw_A APC variant protein; AR 96.3 0.29 9.8E-06 53.1 21.2 212 118-382 96-341 (354)
85 3m1i_C Exportin-1; heat repeat 96.3 0.13 4.5E-06 64.2 21.1 129 362-490 429-572 (1049)
86 3grl_A General vesicular trans 96.2 0.7 2.4E-05 53.4 24.0 138 78-218 30-205 (651)
87 4ffb_C Protein STU2; tubulin f 95.1 0.24 8.1E-06 51.5 14.2 131 146-281 14-166 (278)
88 3a6p_A Exportin-5; exportin-5, 95.0 1.4 4.9E-05 55.6 23.4 117 83-206 26-161 (1204)
89 1lrv_A LRV, leucine-rich repea 94.6 0.011 3.6E-07 60.9 1.9 179 115-370 59-241 (244)
90 2x1g_F Cadmus; transport prote 94.4 4.6 0.00016 49.5 25.5 50 124-173 442-496 (971)
91 4ffb_C Protein STU2; tubulin f 93.1 0.17 5.7E-06 52.7 7.7 94 77-170 110-212 (278)
92 3o2t_A Symplekin; heat repeat, 92.8 9.7 0.00033 41.3 21.2 235 102-392 25-273 (386)
93 2x19_B Importin-13; nuclear tr 92.7 5.5 0.00019 48.6 21.9 46 126-171 430-479 (963)
94 2iw3_A Elongation factor 3A; a 92.1 28 0.00094 42.5 28.1 227 107-341 55-328 (986)
95 4hat_C Exportin-1; heat repeat 91.4 14 0.00049 45.5 23.2 105 104-208 449-570 (1023)
96 2of3_A ZYG-9; multifunctional 90.6 0.22 7.7E-06 51.4 5.1 133 45-179 106-245 (266)
97 3grl_A General vesicular trans 90.5 18 0.00061 41.8 21.0 180 24-210 37-244 (651)
98 3gs3_A Symplekin, LD45768P; he 89.3 7.2 0.00025 39.9 15.1 132 122-280 31-170 (257)
99 3l9t_A Putative uncharacterize 89.1 1.3 4.3E-05 44.7 8.9 136 76-221 77-221 (240)
100 3m1i_C Exportin-1; heat repeat 89.0 9.1 0.00031 47.4 18.9 218 251-489 14-265 (1049)
101 3tt9_A Plakophilin-2; cell adh 88.4 2.5 8.5E-05 42.7 10.8 106 104-209 6-126 (233)
102 3gjx_A Exportin-1; transport, 87.5 20 0.00069 44.3 20.2 102 107-208 478-596 (1073)
103 3u0r_A Apoptosis inhibitor 5; 87.3 26 0.00089 38.9 18.5 155 277-437 33-193 (507)
104 3gjx_A Exportin-1; transport, 87.2 20 0.00068 44.4 19.9 224 262-503 36-292 (1073)
105 1lsh_A Lipovitellin (LV-1N, LV 87.2 1.5 5E-05 54.6 9.9 123 83-206 408-542 (1056)
106 3ibv_A Exportin-T; karyopherin 86.7 23 0.00079 43.5 20.2 89 120-208 457-567 (980)
107 1lrv_A LRV, leucine-rich repea 86.0 0.58 2E-05 47.8 4.5 179 77-333 57-239 (244)
108 2of3_A ZYG-9; multifunctional 85.9 0.85 2.9E-05 47.1 5.7 135 81-218 98-247 (266)
109 3u0r_A Apoptosis inhibitor 5; 83.9 58 0.002 36.1 22.3 64 144-208 32-95 (507)
110 3tt9_A Plakophilin-2; cell adh 80.9 10 0.00035 38.1 11.3 94 318-411 15-122 (233)
111 1lsh_A Lipovitellin (LV-1N, LV 80.4 1.2E+02 0.004 37.5 22.8 140 339-491 433-581 (1056)
112 2xzz_A Protein-glutamine gamma 79.0 6.7 0.00023 34.0 7.9 66 601-670 20-87 (102)
113 3oc3_A Helicase MOT1, MOT1; re 77.4 41 0.0014 38.2 15.2 163 107-315 264-431 (800)
114 3gs3_A Symplekin, LD45768P; he 75.7 39 0.0013 34.4 13.8 99 33-170 21-119 (257)
115 2b6c_A Hypothetical protein EF 75.6 6 0.00021 39.4 7.7 147 76-234 61-211 (220)
116 3jxy_A Alkylpurine DNA glycosy 75.3 5.4 0.00018 40.1 7.3 153 75-239 66-223 (232)
117 4hat_C Exportin-1; heat repeat 73.3 74 0.0025 39.2 18.1 216 253-487 16-263 (1023)
118 1t06_A Hypothetical protein; s 71.2 7.4 0.00025 39.2 7.1 68 116-183 118-193 (235)
119 3oc3_A Helicase MOT1, MOT1; re 68.7 68 0.0023 36.5 14.3 131 344-482 297-431 (800)
120 3l9t_A Putative uncharacterize 68.0 43 0.0015 33.6 11.6 122 252-378 69-210 (240)
121 4gmo_A Putative uncharacterize 63.4 39 0.0013 39.5 12.3 30 253-283 34-63 (684)
122 3a6p_A Exportin-5; exportin-5, 62.0 73 0.0025 40.0 15.1 127 359-489 109-278 (1204)
123 4gmo_A Putative uncharacterize 60.5 26 0.0009 41.0 10.1 142 75-216 39-223 (684)
124 3zy7_A AP-1 complex subunit ga 50.5 1.3E+02 0.0043 26.7 10.6 69 603-676 31-102 (122)
125 2iw3_A Elongation factor 3A; a 46.5 35 0.0012 41.7 8.0 117 67-185 172-297 (986)
126 3o2t_A Symplekin; heat repeat, 41.3 3.6E+02 0.012 28.9 20.8 188 230-429 41-272 (386)
127 1vdy_A Hypothetical protein (R 40.5 51 0.0018 30.2 6.3 46 136-181 44-89 (140)
128 1gyu_A Adapter-related protein 39.8 1.6E+02 0.0054 26.8 9.6 69 603-676 49-120 (140)
129 1vsy_5 Proteasome activator BL 38.1 66 0.0023 39.4 8.8 111 75-186 765-891 (997)
130 2b6c_A Hypothetical protein EF 34.4 1.2E+02 0.0041 29.7 8.6 70 111-180 129-198 (220)
131 1iu1_A Gamma1-adaptin; coated 31.7 2.4E+02 0.008 25.8 9.5 69 603-676 55-126 (146)
132 3zyq_A Hepatocyte growth facto 31.4 2.4E+02 0.0083 27.7 10.3 108 75-187 13-136 (226)
133 2bnx_A Diaphanous protein homo 31.1 4.6E+02 0.016 28.0 13.3 71 269-354 73-147 (386)
134 1t06_A Hypothetical protein; s 30.5 2.8E+02 0.0097 27.3 10.7 68 319-386 116-191 (235)
135 1dvp_A HRS, hepatocyte growth 29.5 1.3E+02 0.0045 29.4 8.0 68 92-162 27-107 (220)
136 3dad_A FH1/FH2 domain-containi 29.3 3.8E+02 0.013 28.1 11.6 110 110-220 164-301 (339)
137 2f31_A Diaphanous protein homo 25.2 4.9E+02 0.017 25.4 15.4 71 269-354 69-143 (233)
138 2q3z_A Transglutaminase 2; tra 24.2 88 0.003 36.4 6.1 66 602-670 602-670 (687)
139 1juq_A ADP-ribosylation factor 24.2 1.6E+02 0.0055 27.7 7.1 74 142-215 14-87 (171)
140 3eg5_B Protein diaphanous homo 23.8 6.8E+02 0.023 26.6 15.6 72 268-354 134-209 (383)
141 2keb_A DNA polymerase subunit 23.7 2E+02 0.0067 24.6 6.5 46 342-391 26-71 (101)
142 4e2i_2 DNA polymerase alpha su 23.7 1.2E+02 0.004 24.8 5.0 53 342-398 3-55 (78)
143 3ldz_A STAM-1, signal transduc 23.6 2.5E+02 0.0086 25.3 8.1 24 138-161 39-62 (140)
144 2r39_A FIXG-related protein; s 23.3 1.7E+02 0.0059 25.4 6.7 68 604-678 34-101 (118)
145 2e9g_A AP-1 complex subunit ga 22.5 2E+02 0.0067 25.8 7.0 44 603-649 40-84 (131)
146 3dad_A FH1/FH2 domain-containi 22.2 7E+02 0.024 26.1 16.2 60 148-207 125-189 (339)
147 1mhq_A ADP-ribosylation factor 22.2 1.8E+02 0.0062 26.6 6.8 55 160-214 20-74 (148)
148 1ho8_A Vacuolar ATP synthase s 21.7 8.3E+02 0.029 26.9 26.8 71 417-487 391-476 (480)
149 1vjj_A Protein-glutamine gluta 20.6 85 0.0029 36.4 5.0 52 602-656 609-660 (692)
150 1x5b_A Signal transducing adap 20.3 1.6E+02 0.0053 27.6 6.1 71 144-214 18-88 (163)
151 3ldz_A STAM-1, signal transduc 20.0 2E+02 0.0068 26.0 6.6 55 160-214 24-78 (140)
No 1
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=5.4e-76 Score=697.41 Aligned_cols=496 Identities=18% Similarity=0.258 Sum_probs=434.9
Q ss_pred HHHHHh-hhc-CCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCCC-cchh
Q 003409 29 VLQEAR-VFN-DPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSA-DEVI 105 (822)
Q Consensus 29 ~lqE~r-~f~-~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~-~~~l 105 (822)
+++|+| .|+ +++.+.++++.+|+|+||++++|+ +++++|++|+|+++|+|+.+||+||||++.+++.. |.++
T Consensus 36 E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~-----d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~ 110 (621)
T 2vgl_A 36 ELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGH-----DIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIR 110 (621)
T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSC-----CCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC-----CCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHH
Confidence 445688 788 567888888888999999999999 78899999999999999999999999999999885 5589
Q ss_pred hhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhh--cCCCHHHHHHHHHHHHhhcccChhHHH--HHHH
Q 003409 106 IVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAI--VDKNPVVASAALVSGIHLLQTTPEIVK--RWSN 181 (822)
Q Consensus 106 LviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l--~d~~p~VRk~A~la~~~l~~~~pe~v~--~~~~ 181 (822)
|+||+|+|||+|+||++||+|||+||+|++++|++++.++|++++ .|++|||||+|++|++|+|+.+|+.++ .|.+
T Consensus 111 L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~ 190 (621)
T 2vgl_A 111 LINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTS 190 (621)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHH
Confidence 999999999999999999999999999999999999999999999 999999999999999999999999999 8999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHH----HHH---H-----------hcCCCCCChhHHHHHHHHHHhhhh
Q 003409 182 EVQEAVQSRAALVQFHALALLHQIRQNDRLAVSK----LVT---S-----------LTRGTVRSPLAQCLLIRYTTQVIR 243 (822)
Q Consensus 182 ~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~----Li~---~-----------l~~~~~~~~w~~v~llr~l~~~~~ 243 (822)
.+.++|+|+|++|+.+|+.++++++++++..+.. ++. + +.+++.++||+|+++||+++.|.+
T Consensus 191 ~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~ 270 (621)
T 2vgl_A 191 RVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPP 270 (621)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSS
T ss_pred HHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCC
Confidence 9999999999999999999999999988764322 221 1 112225589999999999999865
Q ss_pred cccCCCCCchhhHHHHHHHhc------------cCC--hhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHH
Q 003409 244 EAATTQTGDRPFYDFLESCLR------------HKA--EMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRF 309 (822)
Q Consensus 244 ~~~~d~~~~~~l~~~l~~~L~------------~~~--~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry 309 (822)
.+ ||+..+.++++|..+++ |.| +||+|||+++++++.. .+.++..+++.|+.|+.++++|+||
T Consensus 271 ~~--d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~~~~~~L~~~L~~~~~niry 347 (621)
T 2vgl_A 271 PE--DPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLVRACNQLGQFLQHRETNLRY 347 (621)
T ss_dssp CS--SHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHSSCSCHHHHH
T ss_pred CC--CHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcCCCcchHH
Confidence 32 45666778888877663 334 4999999999999974 5788889999999999999999999
Q ss_pred HHHHhhcc-------------------CcCC-CCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHH
Q 003409 310 AAVRTLNK-------------------SLIS-DQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEA 369 (822)
Q Consensus 310 ~aL~~l~~-------------------~lL~-d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~a 369 (822)
+||+.+.+ .+|+ |+|++||++||++|++++|++|++.|++||.+|+.+.|.+||.+++.+
T Consensus 348 ~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~ 427 (621)
T 2vgl_A 348 LALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLK 427 (621)
T ss_dssp HHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99988754 3567 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCCchh-HHHhhheecCC
Q 003409 370 IRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTY-LSTQILHFLGT 448 (822)
Q Consensus 370 I~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~~~~-~~~~i~wiLGE 448 (822)
|+.||+|||++..||+++|+++|+..|++ +.+++|.++++++.++|+.|++++.+|+++++++...+ +.+.++|++||
T Consensus 428 I~~la~k~~~~~~~~v~~Ll~ll~~~~~~-v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGE 506 (621)
T 2vgl_A 428 VAILAEKYAVDYTWYVDTILNLIRIAGDY-VSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGE 506 (621)
T ss_dssp HHHHHHHHCSSTHHHHHHHHHHHHHHGGG-SCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcc
Confidence 99999999999999999999999999888 88999999999999999999999999999999987664 45677899999
Q ss_pred CCCCCCC-----hHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhccccchHHHHHHHHHHhc--CCCCC--CccCC----
Q 003409 449 EGPKTSD-----PSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLY--DGDDE--EPAEQ---- 515 (822)
Q Consensus 449 y~~~~~~-----~~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~~~~~~~i~~ll~~~~~--d~d~E--~~~~~---- 515 (822)
||+.+.+ |.++++.+++++..+++.||+++|+|++|++.++|++++.+..+|+.+.. |.|.| +|+.+
T Consensus 507 y~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~L 586 (621)
T 2vgl_A 507 FGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADVELQQRAVEYLRL 586 (621)
T ss_dssp HTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHH
T ss_pred hHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 9987654 67999999999999999999999999999999999999999999999998 88877 22222
Q ss_pred ---------CCCCCCCCccccccchhh
Q 003409 516 ---------PFDINSVPKEVKTQPLAE 533 (822)
Q Consensus 516 ---------~~~~~~~~~~~~~~~~~~ 533 (822)
..-+++||+++++++...
T Consensus 587 l~~~~~~~~~~vl~~~P~~~~~~~~ll 613 (621)
T 2vgl_A 587 STVASTDILATVLEEMPPFPERESSIL 613 (621)
T ss_dssp HHSSCSTTTTTTSSSCCCCCCC-----
T ss_pred HccCHHHHHHHHhhcCCCCCCcchHHH
Confidence 223567787766654443
No 2
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=1e-73 Score=623.38 Aligned_cols=337 Identities=58% Similarity=0.906 Sum_probs=258.9
Q ss_pred CCCCCccCCCCcCCCcccCCcccchhhhHHHHHhhhcCCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcc
Q 003409 1 MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQ 80 (822)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lqE~r~f~~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~ 80 (822)
|++.+.|||||+++ +.+||.+.||++++||+|.|+++|++++||+.+|+|+||+|++|++||++||+++||+|+|+|+
T Consensus 1 ~~~~~~~~~~~~~~--~~~p~~~~~k~~v~qe~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~ 78 (355)
T 3tjz_B 1 MLKKFDKKDEESGG--GSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQ 78 (355)
T ss_dssp ---------------------CCCCHHHHHHHGGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGG
T ss_pred CCcccccccccccc--ccCccccchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhc
Confidence 67788777766542 3789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHH
Q 003409 81 SRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASA 160 (822)
Q Consensus 81 s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~ 160 (822)
|+|+++||||||||+++++.+++++|+||+|+||++|+||++||+|||+||+|++++|++++++++++++.|++|||||+
T Consensus 79 s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~ 158 (355)
T 3tjz_B 79 SNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSS 158 (355)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHh
Q 003409 161 ALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQ 240 (822)
Q Consensus 161 A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~ 240 (822)
|++|++||++++||++++|+++++++++|+||+|++||+++|++++++|+.++.+|++.+..+...+||+||.++|++..
T Consensus 159 A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~ 238 (355)
T 3tjz_B 159 ALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASR 238 (355)
T ss_dssp HHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999886557799999999999998
Q ss_pred hhhcccCC-CCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc--
Q 003409 241 VIREAATT-QTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK-- 317 (822)
Q Consensus 241 ~~~~~~~d-~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~-- 317 (822)
+.++ | |+.++.++++|.++|+|+|+||+|||+++|+.+.+.+..++..++++|++||+++++|+||+||+++++
T Consensus 239 ~~~~---d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~ 315 (355)
T 3tjz_B 239 QLED---EDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVA 315 (355)
T ss_dssp C--------------------CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC----
T ss_pred hccc---cchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 8776 5 778899999999999999999999999999999876677888999999999999999999999999876
Q ss_pred ---------------CcCCCCchhhHHHHHHHHhccCCcc
Q 003409 318 ---------------SLISDQNRSIATLAITTLLKTGNES 342 (822)
Q Consensus 318 ---------------~lL~d~d~sIr~~aL~lL~~l~ne~ 342 (822)
.|++|+|+||+++|+++|+++|+|.
T Consensus 316 ~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllktg~e~ 355 (355)
T 3tjz_B 316 MKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSEG 355 (355)
T ss_dssp ----------------------------------------
T ss_pred HHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhhhccCCC
Confidence 7899999999999999999999974
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1.9e-67 Score=625.57 Aligned_cols=481 Identities=17% Similarity=0.257 Sum_probs=422.0
Q ss_pred hhhhHHHH---Hh-hhcCCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCC
Q 003409 25 EKGAVLQE---AR-VFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS 100 (822)
Q Consensus 25 ~k~~~lqE---~r-~f~~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~ 100 (822)
||..+.|| +| .|++++ ..+|+++ |+|+||++++|+ +++++|+.++|+++|+|+.+|||||||++.+++.
T Consensus 28 e~~~i~~e~~~ir~~l~~~~-~~~k~~~-l~kli~~~~~G~-----d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~ 100 (618)
T 1w63_A 28 EREMIQKECAAIRSSFREED-NTYRCRN-VAKLLYMHMLGY-----PAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDE 100 (618)
T ss_dssp HHHHHHHHHHHHHHHHTTTC-TTTHHHH-HHHHHHHHHTTC-----CCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHhhCCC-HHHHHHH-HHHHHHHHHcCC-----CCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCC
Confidence 55555565 55 787764 4556666 999999999999 6788999999999999999999999999999998
Q ss_pred Ccc-hhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHH
Q 003409 101 ADE-VIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRW 179 (822)
Q Consensus 101 ~~~-~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~ 179 (822)
.++ ++|+||+|+|||+|+||++||+|||+||+|+++++++++.+.|.+++.|++|||||+|++|++++++.+|+.++.|
T Consensus 101 ~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~ 180 (618)
T 1w63_A 101 RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMF 180 (618)
T ss_dssp CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGG
T ss_pred CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHH
Confidence 766 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhcChH---HHHHHH-------HHh---------cCCCCCChhHHHHHHHHHHh
Q 003409 180 SNEVQEAVQSRAALVQFHALALLHQIRQNDRL---AVSKLV-------TSL---------TRGTVRSPLAQCLLIRYTTQ 240 (822)
Q Consensus 180 ~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~---~i~~Li-------~~l---------~~~~~~~~w~~v~llr~l~~ 240 (822)
++.+.++++|+|++|+++|+.+|.++..+++. .+.+++ .++ .++..++||+|+.++++++.
T Consensus 181 ~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~ 260 (618)
T 1w63_A 181 LPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRI 260 (618)
T ss_dssp GGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999987653 222222 221 12236799999999999999
Q ss_pred hhhcccCCCCCchhhHHHHHHHhc------cCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHh
Q 003409 241 VIREAATTQTGDRPFYDFLESCLR------HKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRT 314 (822)
Q Consensus 241 ~~~~~~~d~~~~~~l~~~l~~~L~------~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~ 314 (822)
+.+. +|+..+.++++|..+++ |.+++|+|||+++++.+.+ .+.++..+++.|..|+.++++|+||+||++
T Consensus 261 l~~~---~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~ 336 (618)
T 1w63_A 261 LGRN---DDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLRVLAINILGRFLLNNDKNIRYVALTS 336 (618)
T ss_dssp HTTT---CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTCSSTTTHHHHHHH
T ss_pred hCCC---CHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 8655 66666778888888864 3467999999999999975 466777899999999999999999999999
Q ss_pred hcc-----------------CcCCCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhC
Q 003409 315 LNK-----------------SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKF 377 (822)
Q Consensus 315 l~~-----------------~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~ 377 (822)
+.+ .|+.|+|.+||++||++|+++++++|++.|++||.+|+.+.+.+||.+++.+|+.+|.+|
T Consensus 337 L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 337 LLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKY 416 (618)
T ss_dssp HHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 865 678999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhc-CCchhHHHhhheecCCCCCCC---
Q 003409 378 PLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIED-CEFTYLSTQILHFLGTEGPKT--- 453 (822)
Q Consensus 378 ~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~-~~~~~~~~~i~wiLGEy~~~~--- 453 (822)
++...||+++++++|+..|.+ ++.++|.+++++++++|+.+++++.+|++++++ +.+....++++|+|||||+.+
T Consensus 417 ~~~~~~~v~~ll~lL~~~~~~-v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~ 495 (618)
T 1w63_A 417 APSKRWHIDTIMRVLTTAGSY-VRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSG 495 (618)
T ss_dssp CCCHHHHHHHHHHHHHHTGGG-SCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhccc
Confidence 999999999999999987755 788999999999999999999999999999985 666666677999999999643
Q ss_pred ---------CChHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHhhccccchHHHHHHHHHHhcCCCCC--CccCCCC
Q 003409 454 ---------SDPSKYIRYIYNRVH--LENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDE--EPAEQPF 517 (822)
Q Consensus 454 ---------~~~~~~i~~i~~~~~--~e~~~vr~~~ltal~K~~~~~~~~~~~i~~ll~~~~~d~d~E--~~~~~~~ 517 (822)
.+|..+++.+++-+. .+++.||+++++|++||+.+.|+.++.+..+|++|..|.|.| +|+.+++
T Consensus 496 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~~~~l~~~L~~~~~~~d~evrdRA~~y~ 572 (618)
T 1w63_A 496 QCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQQRAVEYN 572 (618)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 357777777776321 789999999999999999999999999999999999887777 4544444
No 4
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=3.1e-65 Score=604.13 Aligned_cols=487 Identities=15% Similarity=0.273 Sum_probs=428.9
Q ss_pred CCcccchhhhHHHHHhhhcCCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhC
Q 003409 19 SPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELS 98 (822)
Q Consensus 19 ~~~~~~~k~~~lqE~r~f~~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~ 98 (822)
..|+...|++.++|+|.-.+++ +.++++.+++|+||++++|+ +++++|+.++++++|+|+.+||+||+|++.++
T Consensus 4 ~~~f~~~~~~e~~~i~~~L~~~-~~~~k~~~~~kli~~~~~G~-----d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~ 77 (591)
T 2vgl_B 4 SKYFTTNKKGEIFELKAELNNE-KKEKRKEAVKKVIAAMTVGK-----DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYA 77 (591)
T ss_dssp CCTTCCCSSSHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHTTC-----CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred chhcccccCChHHHHHHHHcCC-CHHHHHHHHHHHHHHHHCCC-----ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Confidence 3566667788999999544444 44555566999999999999 78889999999999999999999999999998
Q ss_pred CCC-cchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH
Q 003409 99 PSA-DEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK 177 (822)
Q Consensus 99 ~~~-~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~ 177 (822)
+.. +.+++++|+|+|||+|+||++||+|||+||+|+.+++++.+.+.+++++.|++|||||+|++|++++++.+|+.++
T Consensus 78 ~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~ 157 (591)
T 2vgl_B 78 KSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE 157 (591)
T ss_dssp HHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc
Confidence 864 5579999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred --HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcCh---------HHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhccc
Q 003409 178 --RWSNEVQEAVQSRAALVQFHALALLHQIRQNDR---------LAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAA 246 (822)
Q Consensus 178 --~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~---------~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~ 246 (822)
.|++.+.+++.|+|++|+.+|+.+|.+++.+++ ..+.+|+..+. ..+||+|+.++|++..+.+.
T Consensus 158 ~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~---~~~~~~q~~il~~l~~l~~~-- 232 (591)
T 2vgl_B 158 DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN---ECTEWGQIFILDCLSNYNPK-- 232 (591)
T ss_dssp HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH---HCCHHHHHHHHHHHHTSCCC--
T ss_pred cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCC---CCCchHHHHHHHHHHHhCCC--
Confidence 599999999999999999999999999998765 34778888776 56799999999999988654
Q ss_pred CCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCC---ChHhHh----hHHHHHHHHhcCCCchhHHHHHHhhcc--
Q 003409 247 TTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGV---TNRELT----PAITVLQLFLSSSKPVLRFAAVRTLNK-- 317 (822)
Q Consensus 247 ~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~---~~~~~~----~a~~~L~~~l~s~~~n~ry~aL~~l~~-- 317 (822)
++.....+++.+.++|++.+++|++||+++++++... ++..+. .+...|.. +.++++|+||+||+++.+
T Consensus 233 -~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~-L~~~d~~vr~~aL~~l~~i~ 310 (591)
T 2vgl_B 233 -DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVT-LLSGEPEVQYVALRNINLIV 310 (591)
T ss_dssp -SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHH-HTTSCHHHHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH-HhcCCccHHHHHHHHHHHHH
Confidence 4555677889999999999999999999999998531 223332 33344554 456899999999999865
Q ss_pred --------------CcCCCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHH
Q 003409 318 --------------SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRS 383 (822)
Q Consensus 318 --------------~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~ 383 (822)
.++.+++.+||++|+++|++++|++|++.|+++|.+|+.+.+.+||.+++.+|+.+|.+||+...|
T Consensus 311 ~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~ 390 (591)
T 2vgl_B 311 QKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAER 390 (591)
T ss_dssp HHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHH
Confidence 133355599999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCChHHHHHHH
Q 003409 384 LMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYI 463 (822)
Q Consensus 384 ~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i 463 (822)
|+++|+++|++.|++ +..++|.++++|++++|+.+++++..|+++++++..++++..++|+|||||+.++++.++++.+
T Consensus 391 ~v~~Ll~ll~~~~~~-v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l 469 (591)
T 2vgl_B 391 CVSTLLDLIQTKVNY-VVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESF 469 (591)
T ss_dssp HHHHHHHHHHTCCHH-HHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHcccchH-HHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHHHHHHHH
Confidence 999999999988777 7788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCHHHHHHHHHHHHHHhhccccch-HHHHHHHHHHhcCCCC-C--CccCCCCCC
Q 003409 464 YNRVHLENATVRAAAVSTLAKFGAMVDALK-PRVFVLLRRCLYDGDD-E--EPAEQPFDI 519 (822)
Q Consensus 464 ~~~~~~e~~~vr~~~ltal~K~~~~~~~~~-~~i~~ll~~~~~d~d~-E--~~~~~~~~~ 519 (822)
++++..+++.||+++++|++|++.+.|+.. +.+..+|+++..|.++ | +|+.+++.+
T Consensus 470 ~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 470 LEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRL 529 (591)
T ss_dssp STTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred HHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Confidence 999999999999999999999999998654 8899999999877655 4 565555443
No 5
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2
Probab=100.00 E-value=1.5e-63 Score=515.80 Aligned_cols=264 Identities=43% Similarity=0.755 Sum_probs=251.1
Q ss_pred CchhhHhhhhcCCccccccCCccccC-CceeecccccceEEEEEEEeecceEEEEEEeecCCCcccceeEEEEEecCCCC
Q 003409 553 STVDAYEKLLSSIPEFSDFGKLFKSS-APVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAE 631 (822)
Q Consensus 553 ~~~~~~~~~l~~ip~~~~~g~~~~~s-~~v~lte~e~ey~v~~~kh~~~~~ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~ 631 (822)
..++.|+++|+.+|+|++||++++|| .++.|||+|+||+|+|+||+|++||||||.|+||++||+|+||+|.+++.++
T Consensus 9 ~~~~~ya~~L~~ipef~~lG~l~kSS~~pv~LTE~EtEYvV~~vKHiF~~hiVlQF~i~NTL~dq~LenVsV~~~~~d~- 87 (275)
T 1r4x_A 9 TRQEIFQEQLAAVPEFRGLGPLFKSSPEPVALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTEA- 87 (275)
T ss_dssp CHHHHHHHHHHTSGGGTTSCSCCEECSSCEECSCTTSSEEEEEEEEECSSEEEEEEEEEECCTTEEEEEEEEEEEESSS-
T ss_pred chhHHHHHHHhcChhHHHcCcccccCCCcccccCCCCceEEEEEEEecCCcEEEEEEeEEccCcEEEeeEEEEEEcCCC-
Confidence 45789999999999999999999999 8999999999999999999999999999999999999999999999998765
Q ss_pred CceEEEeccCCCCCCCCCceEEEEEeeCC--CCCceeeeeceeeeEEeeeCCCCCCCCCCCccceEEccceeeccccccc
Q 003409 632 EFAEVASKPLRSLPYDSPGQIFGAFEKPE--GVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVM 709 (822)
Q Consensus 632 ~~~~~~~ip~~~L~~~~~~~~~v~~~~~~--~~~~~~~f~~~L~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~~dfi~ 709 (822)
+++.+.+|+++|+|++++++||.++++. ...+.++|+|+|||+++|+||.||+|+++||+|||+|||++|+++|||+
T Consensus 88 -~~~~~~ipi~~L~~~~~g~~yV~l~~~~~~~~~~~~tf~~~LkF~vke~Dp~tGe~~deGyeDEY~lEdlel~~~D~i~ 166 (275)
T 1r4x_A 88 -YEVLXYVPARSLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETDDEGYEDEYVLEDLEVTVADHIQ 166 (275)
T ss_dssp -CEEEEEECEEEECTTCCEEEEEEEECCSSSTTCCCEEEEEEEEEEEEEBCTTTCCBCSCCEEEEEECCCEEECGGGGEE
T ss_pred -ceEEEeeeccccCCCCCccEEEEEEcCCCccccccceeEEEEEEEEEeccCCCCCcCCCCccceEEccceeechhhEEe
Confidence 6889999999999999999999999985 4568899999999999999999999999999999999999999999999
Q ss_pred ccCcCchHHHHhhcCCCceeEEEEecCCCCcHHHHHHHHHHhhCCcccCCCccccCCCccceEEEEEEEecCceEEEEEE
Q 003409 710 KVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQ 789 (822)
Q Consensus 710 p~~~~~F~~~W~~~~~~~e~~~~~~l~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ag~~~~~~~vl~~~~ 789 (822)
|...++|++.|++++.+.|.+++|+|++++++++|+++|++.|||+||+|+|.++++++.|+|+|+|+|+||.+|||++|
T Consensus 167 p~~~~nF~~~We~l~~~~E~~~tf~L~~~~sl~~AV~~l~~~Lgm~p~e~sd~v~~~~~~HtL~LsG~~~gg~~Vlvr~r 246 (275)
T 1r4x_A 167 KVMKLNFEAAWDEVGDEFEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSR 246 (275)
T ss_dssp ECCCSCHHHHHHHHCSTTCEEEEEEETTCCCHHHHHHHHHHHHTCEECTTTTSCCSSCSEEEEEEEEEETTTEEEEEEEE
T ss_pred ecccCchHHHHHhcCCccceEEEEEccCcCcHHHHHHHHHHhcCCccccCCccCCCCCcceEEEEEEEEeCCcEEEEEEE
Confidence 99989999999999877899999999889999999999999999999999998998889999999999999999999999
Q ss_pred EeecCCcceEEEEEEecCCcchHHHHHHHHh
Q 003409 790 FGIDGPKEVAMKLAVRSEDDNVSDMIHEIVA 820 (822)
Q Consensus 790 ~~~~~~~~~~~~~~vRs~~~~v~~~v~~~~~ 820 (822)
+++++ ||+++++|||+++++++.|+++++
T Consensus 247 l~~~~--gv~~kl~vRs~~~~v~~~v~~~v~ 275 (275)
T 1r4x_A 247 LLLLD--TVTMQVTARSLEELPVDIILASVG 275 (275)
T ss_dssp EEESS--SEEEEEEEEESSHHHHHHHHHHC-
T ss_pred EecCC--ceEEEEEEEcCCHHHHHHHHHhhC
Confidence 99843 899999999999999999999874
No 6
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2
Probab=100.00 E-value=1.3e-63 Score=530.85 Aligned_cols=301 Identities=42% Similarity=0.738 Sum_probs=253.2
Q ss_pred cCCCCCCCCCCccccccchhhhcCCCCCC-CCCCCCCCCCCCchhhHhhhhcCCccccccCCccccC-Cceeecccccce
Q 003409 513 AEQPFDINSVPKEVKTQPLAEKKAPGKMP-AGLGAPPSGPPSTVDAYEKLLSSIPEFSDFGKLFKSS-APVELTEAETEY 590 (822)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ip~~~~~g~~~~~s-~~v~lte~e~ey 590 (822)
..++||++.+|. ...+..++ ...... .............++.|+++|+.||+|++||++++|| .++.|||+|+||
T Consensus 18 ~~~~Fd~~~Vp~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ya~~L~~ipef~~lG~l~kSS~~~v~LTE~EtEY 94 (322)
T 1pzd_A 18 SEKPFDLKSVPL--ATAPLAEQ-RTESTPVTAAKQPEKVAATRQEIFQEQLAAVPEFQGLGPLFKSSPEPVALTESETEY 94 (322)
T ss_dssp -------------------------------------CCCCSHHHHHHHHHHTCGGGTTCCCCCEECSSCEECSCTTSSE
T ss_pred CCCCcccccCcc--hhhhhhhh-cccccccccccccccccchhHHHHHHHHhcchhHHHcCcccccCCCcccccCCCcee
Confidence 568999999984 11111111 111100 0000111223446778999999999999999999999 999999999999
Q ss_pred EEEEEEEeecceEEEEEEeecCCCcccceeEEEEEecCCCCCceEEEeccCCCCCCCCCceEEEEEeeCC--CCCceeee
Q 003409 591 AVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKPE--GVPAVGKF 668 (822)
Q Consensus 591 ~v~~~kh~~~~~ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~ip~~~L~~~~~~~~~v~~~~~~--~~~~~~~f 668 (822)
+|+|+||+|.+||||||.|+||++||+|+||+|++++.+. |++.+.+|+++|+|++++++||.++++. ...+.++|
T Consensus 95 vV~~vKHiF~~hiVlQF~~~NTL~dq~LenV~V~~~~~~~--~~~~~~ip~~~L~~~~~g~~yv~~~~~~~~~~~~~~~f 172 (322)
T 1pzd_A 95 VIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPSEA--YEVLCYVPARSLPYNQPGTCYTLVALPKEDPTAVACTF 172 (322)
T ss_dssp EEEEEEEECSSEEEEEEEEEECCTTEEEEEEEEEEEESSS--CEEEEEECEEEECBTCCEEEEEEEECCSSCTTCCCEEE
T ss_pred EEEEEEEeccCcEEEEEEEEEccCceEEeeEEEEEecCCC--ceEEEEEEHhHCCCCCCeeEEEEEEecCCCCCccceEE
Confidence 9999999999999999999999999999999999998765 9999999999999999999999999985 45688999
Q ss_pred eceeeeEEeeeCCCCCCCCCCCccceEEccceeecccccccccCcCchHHHHhhcCCCceeEEEEecCCCCcHHHHHHHH
Q 003409 669 SNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAV 748 (822)
Q Consensus 669 ~~~L~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~~dfi~p~~~~~F~~~W~~~~~~~e~~~~~~l~~~~~~~~a~~~i 748 (822)
+|+|||+++|+||.||+|+++||+|||+|||++|+++|||+|...++|++.|++++.+.|.+++|+|++++++++|+++|
T Consensus 173 ~~~LkF~vke~Dp~TGe~~deGyeDEY~lEdlel~~~D~i~p~~~~nF~~~We~l~~~~E~~~tf~L~~~~sL~~AV~~l 252 (322)
T 1pzd_A 173 SCVMKFTVKDCDPTTGEADDEGYEDEYVLEDLEVTIADHIQKVMKLNFEAAWDEVGDEFQKEETFTLSTIKTLEEAVGNI 252 (322)
T ss_dssp EEEEEEEEEEBCTTTCCBCSCCEEEEEECCCEEECGGGGEEECCCSCHHHHHHHHCSTTCEEEEEEESSCCCHHHHHHHH
T ss_pred EEEEEEEEEeecCCCCCcCCCCccceEEccceeechhhEeeecccCchHHHHHhcCCccceEEEEEccCcCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999899999999998678999999998899999999999
Q ss_pred HHhhCCcccCCCccccCCCccceEEEEEEEecCceEEEEEEEeecCCcceEEEEEEecCCcchHHHHHHHHh
Q 003409 749 ISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVA 820 (822)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~l~~ag~~~~~~~vl~~~~~~~~~~~~~~~~~~vRs~~~~v~~~v~~~~~ 820 (822)
++.|||+||+|+|.++++++.|+|+|+|+|+||.+|||++|+++++ ||+++++|||+++++++.|+++++
T Consensus 253 ~~~Lgm~p~e~sd~v~~~~~sHtL~LsG~~~gg~~VLvr~rl~~~~--gv~~kl~vRS~~~~v~~~v~~~v~ 322 (322)
T 1pzd_A 253 VKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLLD--TVTMQVTARSSEELPVDIVLASVG 322 (322)
T ss_dssp HHHHTCEECTTTTCCCSSCSEEEEEEEEEETTSCEEEEEEEEEESS--SEEEEEEEEESSHHHHHHHHHHCC
T ss_pred HHhcCCccccCCCcCCCCCcceEEEEEEEEeCCcEEEEEEEEeeCC--ceEEEEEEecCCHHHHHHHHHhhC
Confidence 9999999999999889888999999999999999999999999843 899999999999999999999874
No 7
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=99.93 E-value=1.1e-24 Score=228.03 Aligned_cols=222 Identities=14% Similarity=0.158 Sum_probs=180.2
Q ss_pred ccCCccccCCceeecccccceEEEEEEEeecc---eEEEEEEeecCCCcccceeEEEEEecCCC--CCceEEEeccCCCC
Q 003409 570 DFGKLFKSSAPVELTEAETEYAVNVVKHIFDR---HVVFQYNCTNTIPEQLLENVTVIVDASEA--EEFAEVASKPLRSL 644 (822)
Q Consensus 570 ~~g~~~~~s~~v~lte~e~ey~v~~~kh~~~~---~ivl~f~v~Nt~~d~~L~nv~v~l~~~~~--~~~~~~~~ip~~~L 644 (822)
+|..++..+++|.|+| ++.+.++|..|.+ +|.|+|. |+.+ ..|+||++++.+.++ +.+.+....+.++|
T Consensus 39 ~f~rll~~~~GVLyED---~~IQIg~kse~~~~~g~i~L~~g--NKs~-~~it~f~~~i~~~~~~~~~l~~~~~~~~~tI 112 (273)
T 3hs8_A 39 NFARFVCKNNGVLFEN---QLLQIGLKSEFRQNLGRMFIFYG--NKTS-TQFLNFTPTLICADDLQTNLNLQTKPVDPTV 112 (273)
T ss_dssp CGGGGSSCSCEEEEEC---SSEEEEEEEEEETTEEEEEEEEE--ECSS-SCBBSCCCEEECCTTHHHHEEEEECCCCSCB
T ss_pred HHHhheEcCCcEEEeC---CcEEEEEEEEEeCceEEEEEEEE--cCCC-CcceeEEEEEECCCCCCcceEEEecCCCCeE
Confidence 5667888899999965 5999999999974 7788886 5553 369999999987652 24666665445799
Q ss_pred CCCCCceEE--EEEeeCCCCCceeeeeceeeeEEeeeCCCCCCCCCCCccceEEccceeecccccccccCcC--chHHHH
Q 003409 645 PYDSPGQIF--GAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVS--NFRNAW 720 (822)
Q Consensus 645 ~~~~~~~~~--v~~~~~~~~~~~~~f~~~L~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~~dfi~p~~~~--~F~~~W 720 (822)
+|+++.++. +.++.++...|...++ |.. .|....+.| .+||.++|||+|+.++ +|+++|
T Consensus 113 ~p~~q~qq~i~v~~~~pF~~~P~l~is----f~~------------~g~~~~~~L-kLPi~~~kf~~p~~~~~~~F~~rW 175 (273)
T 3hs8_A 113 DGGAQVQQVVNIECISDFTEAPVLNIQ----FRY------------GGTFQNVSV-KLPITLNKFFQPTEMASQDFFQRW 175 (273)
T ss_dssp CTTCEEEEEEEEEECSCCCCCCEEEEE----EEE------------TTEEEEEEE-ECCCCGGGGEEECCCCHHHHHHHH
T ss_pred CCCCEEEEEEEEEEcccccCCCEEEEE----EEE------------CCeEEEEEE-ecceehhheeccccCCHHHHHHHH
Confidence 999975544 5556677767777666 753 134567889 5999999999999974 899999
Q ss_pred hhcC-CCceeEEEEecCCCCcHHHHHHHHHHhhCCcccCCCccccCCCccceEEEEEEEecC-ceEEEEEEEeecCCcce
Q 003409 721 ESIG-PDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGN-VKVLVRLQFGIDGPKEV 798 (822)
Q Consensus 721 ~~~~-~~~e~~~~~~l~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ag~~~~~-~~vl~~~~~~~~~~~~~ 798 (822)
++++ ++.|++++|.+ ..+...++++.+++.|||++|+|+||+++ ++++||+|+++ .+++|.+|++++.. +.
T Consensus 176 kql~~~~~E~q~v~~~-~~~~~~~~v~~~l~~lg~~vl~g~Dpn~~-----n~v~AGi~~t~~g~~gcLvRle~n~~-~~ 248 (273)
T 3hs8_A 176 KQLSNPQQEVQNIFKA-KHPMDTEITKAKIIGFGSALLEEVDPNPA-----NFVGAGIIHTKTTQIGCLLRLEPNLQ-AQ 248 (273)
T ss_dssp HHCCSGGGEEEEEEEC-SSCCCHHHHHHHHHHHTCEECTTSSSSTT-----SEEEEEEEECSSCEEEEEEEEEEETT-TT
T ss_pred HhcCCCCceEEEEecC-CCCCCHHHHHHHHHhCCeEEeCCCCCCcc-----cEEEEEEEEeCCCCEEEEEEEEEccc-CC
Confidence 9998 67899999997 56667889999999999999999997766 67999999984 68999999998864 67
Q ss_pred EEEEEEecCCcchHHHHHHHHhc
Q 003409 799 AMKLAVRSEDDNVSDMIHEIVAS 821 (822)
Q Consensus 799 ~~~~~vRs~~~~v~~~v~~~~~~ 821 (822)
++||||||+++++++.|++++..
T Consensus 249 ~~rlTVRSt~~~vs~~i~~~i~~ 271 (273)
T 3hs8_A 249 MYRLTLRTSKDTVSQRLCELLSE 271 (273)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHT
T ss_pred EEEEEEEECChhHHHHHHHHHHh
Confidence 99999999999999999999863
No 8
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=99.90 E-value=3.3e-22 Score=207.64 Aligned_cols=222 Identities=14% Similarity=0.162 Sum_probs=177.1
Q ss_pred ccCCccccCCceeecccccceEEEEEEEeecc---eEEEEEEeecCCCcccceeEEEEEecCCC--CCceEEEeccCCCC
Q 003409 570 DFGKLFKSSAPVELTEAETEYAVNVVKHIFDR---HVVFQYNCTNTIPEQLLENVTVIVDASEA--EEFAEVASKPLRSL 644 (822)
Q Consensus 570 ~~g~~~~~s~~v~lte~e~ey~v~~~kh~~~~---~ivl~f~v~Nt~~d~~L~nv~v~l~~~~~--~~~~~~~~ip~~~L 644 (822)
+|.+++..+++|.|.| ++.+.++|+.|.+ ++.|+|+ |+.+ ..|+||++.+.+.+. ..+.+....+.++|
T Consensus 13 ~f~rl~~~~~GVLyEd---~~iQIg~kse~~~~~gri~l~~g--NKs~-~~l~~f~~~i~~~~~~~~~l~~~~~~~~~~I 86 (247)
T 1kyf_A 13 NFARFVCKNNGVLFEN---QLLQIGLKSEFRQNLGRMFIFYG--NKTS-TQFLNFTPTLICADDLQTNLNLQTKPVDPTV 86 (247)
T ss_dssp TGGGGSSCCCEEEEEC---SSEEEEEEEEEETTEEEEEEEEE--ECSS-SCBEEEEEEEECCHHHHHHEEEEECCCCSCB
T ss_pred HHHHHHhcCceEEEEC---CCEEEEEEEEEeCCeEEEEEEEE--cCCC-CceeeEEEEEecCcccCCCeeEecCCCCcee
Confidence 5667788899999965 5999999999974 7788886 5553 369999999976432 13666655566789
Q ss_pred CCCCCceEEEEE--eeCCCCCceeeeeceeeeEEeeeCCCCCCCCCCCccceEEccceeecccccccccCcC--chHHHH
Q 003409 645 PYDSPGQIFGAF--EKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVS--NFRNAW 720 (822)
Q Consensus 645 ~~~~~~~~~v~~--~~~~~~~~~~~f~~~L~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~~dfi~p~~~~--~F~~~W 720 (822)
+++++.++.+.+ ..++...|..+++ |... |-...+.| .+||.+++||+|..++ +|+++|
T Consensus 87 ~~~~q~qq~i~v~~~~~f~~~P~l~is----f~~~------------g~~~~~~L-kLPi~l~KF~~p~~~~~~~Ff~rW 149 (247)
T 1kyf_A 87 DGGAQVQQVVNIECISDFTEAPVLNIQ----FRYG------------GTFQNVSV-KLPITLNKFFQPTEMASQDFFQRW 149 (247)
T ss_dssp CTTCEEEEEEEEEECSCCCCCCEEEEE----EEET------------TEEEEEEE-ECCCCGGGGEEECCCCHHHHHHHH
T ss_pred CCCcEEEEEEEEEEccccCCCCEEEEE----EEEC------------CeeeEEEE-ecCcEEEEeecCCcCCHHHHHHHH
Confidence 999987766555 4455666777665 7541 33467889 5999999999999985 799999
Q ss_pred hhcC-CCceeEEEEecCCCCcHHHHHHHHHHhhCCcccCCCccccCCCccceEEEEEEEecC-ceEEEEEEEeecCCcce
Q 003409 721 ESIG-PDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGN-VKVLVRLQFGIDGPKEV 798 (822)
Q Consensus 721 ~~~~-~~~e~~~~~~l~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ag~~~~~-~~vl~~~~~~~~~~~~~ 798 (822)
++++ ++.|.+.+|.+...-+ .+.+..++..|||.+++|.||+++ ++++||+++++ .+++|.+|++.+.+ +.
T Consensus 150 ~~l~~~~~E~q~~f~~~~~~~-~~~~~~~l~gf~~~vl~~vDpn~~-----niv~agi~~t~~~~~gcLlRlE~n~~-~~ 222 (247)
T 1kyf_A 150 KQLSNPQQEVQNIFKAKHPMD-TEITKAKIIGFGSALLEEVDPNPA-----NFVGAGIIHTKTTQIGCLLRLEPNLQ-AQ 222 (247)
T ss_dssp TTCCSGGGEEEEEEECSSCCC-HHHHHHHHHHHTSEEECSSSSSTT-----SEEEEEEEECSSCEEEEEEEEEEETT-TT
T ss_pred HhccCCCceeEEEeccCCCcC-HHHHHHHHhcCCeEEeeCCCCCcC-----cEEEEEEEEcCCCcEEEEEEEEEcCc-CC
Confidence 9997 5679999999853334 455678889999999999998866 79999999995 58999999999865 66
Q ss_pred EEEEEEecCCcchHHHHHHHHhc
Q 003409 799 AMKLAVRSEDDNVSDMIHEIVAS 821 (822)
Q Consensus 799 ~~~~~vRs~~~~v~~~v~~~~~~ 821 (822)
++|+||||+++.+|+.|+++|..
T Consensus 223 ~~rltvRss~~~vs~~l~~ll~~ 245 (247)
T 1kyf_A 223 MYRLTLRTSKDTVSQRLCELLSE 245 (247)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHT
T ss_pred EEEEEEEECChHHHHHHHHHHHh
Confidence 89999999999999999999863
No 9
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.50 E-value=6.6e-13 Score=157.22 Aligned_cols=426 Identities=8% Similarity=0.024 Sum_probs=285.8
Q ss_pred HHHHHHHHhcCCCCCccc-hhhhhhhhhhhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHH
Q 003409 50 ITKLLYLLNQGETFTKIE-ATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIR 128 (822)
Q Consensus 50 l~kli~~~~~G~~f~~~e-~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr 128 (822)
+||+.|+...-.--.+-| +.-+...+.|-+++++...|-+.--++..+.. .+.+--+...+.+=+.|+||++|-.|+.
T Consensus 86 ~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~~~~~l~~~l~~~L~~~~~~VRk~A~~ 164 (618)
T 1w63_A 86 DKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS-SEMCRDLAGEVEKLLKTSNSYLRKKAAL 164 (618)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 566666544321001113 22233446677889999988888778877763 2223445678888888999999999999
Q ss_pred HhcCCC--chhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhH---HHHHHHHHHHHhc---------------
Q 003409 129 VLCRIT--DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEI---VKRWSNEVQEAVQ--------------- 188 (822)
Q Consensus 129 ~l~~I~--~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~---v~~~~~~l~~ll~--------------- 188 (822)
++.++. .|++++.+.+.+.+++.|++|.|+-.|+.++..+.+.+|+. ++++++.+..+|.
T Consensus 165 al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~ 244 (618)
T 1w63_A 165 CAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSG 244 (618)
T ss_dssp HHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSS
T ss_pred HHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccC
Confidence 998874 57888889999999999999999999999999999888874 2333444433332
Q ss_pred CCChhHHHHHHHHHHHHHhcChHH---HHHHHHHhc----CCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHH
Q 003409 189 SRAALVQFHALALLHQIRQNDRLA---VSKLVTSLT----RGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLES 261 (822)
Q Consensus 189 d~~~~V~~~al~lL~~i~~~d~~~---i~~Li~~l~----~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~ 261 (822)
..++-.+...+.+|..+...++.. +..++..+. .....++......++.+... .+ ++.......+.|..
T Consensus 245 ~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l--~~--~~~l~~~a~~~L~~ 320 (618)
T 1w63_A 245 ISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI--KS--ESGLRVLAINILGR 320 (618)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS--CC--CHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc--CC--CHHHHHHHHHHHHH
Confidence 246777777888888887777643 223444331 11112345555667776653 10 22222345677888
Q ss_pred HhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc---------------CcCCCCchh
Q 003409 262 CLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK---------------SLISDQNRS 326 (822)
Q Consensus 262 ~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~---------------~lL~d~d~s 326 (822)
+|.+.++.|.|-|+.++..+....+..+......+-..+.+++..+|-.|+..+.. .++.+.|..
T Consensus 321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e 400 (618)
T 1w63_A 321 FLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPE 400 (618)
T ss_dssp HHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHH
T ss_pred HHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHH
Confidence 88888888999999988887533345555555566667778888899888887754 345677889
Q ss_pred hHHHHHHHHhccCCc--chHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhc-CCcchHHH
Q 003409 327 IATLAITTLLKTGNE--SSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREE-GGFEYKKA 403 (822)
Q Consensus 327 Ir~~aL~lL~~l~ne--~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~-g~~~v~~~ 403 (822)
+|+.++..+..+|.. .+....+..|.+.+.+.++.++.+++..+..+..++|+.....+..++++|... ....+...
T Consensus 401 ~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~ 480 (618)
T 1w63_A 401 FKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQV 480 (618)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHH
Confidence 999999999888763 678888888888888777778888999999999999998888999999999853 11122233
Q ss_pred HHHHHHHHHHhCCc-----------hHHHHHHHHHHHhhc-CCchhHHHhhheecCCCCCCCCChHHHHHHHHhhccC-C
Q 003409 404 IVDSIVILIRDIPD-----------AKENGLLHLCEFIED-CEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHL-E 470 (822)
Q Consensus 404 iv~~i~~iv~~~p~-----------~~~~~l~~L~~~l~~-~~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i~~~~~~-e 470 (822)
++..+-......++ ....++..|..+++. .+.+.++..++|.++.++-..+.....+..++.++.. .
T Consensus 481 ~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~~~~l~~~L~~~~~~~ 560 (618)
T 1w63_A 481 AAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSI 560 (618)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHTTCS
T ss_pred HHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhcCCC
Confidence 33344433322111 122345555555543 3456778888888887766554445556666655532 3
Q ss_pred CHHHHHHHHH
Q 003409 471 NATVRAAAVS 480 (822)
Q Consensus 471 ~~~vr~~~lt 480 (822)
+++||.-+..
T Consensus 561 d~evrdRA~~ 570 (618)
T 1w63_A 561 DVELQQRAVE 570 (618)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5567655444
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.41 E-value=2.5e-11 Score=141.67 Aligned_cols=434 Identities=11% Similarity=0.103 Sum_probs=289.1
Q ss_pred hhhhhhhhhhcccCCccchhHHHHHHHHhCCC-Ccc-h-hhhhhhHHhhcCCCCHHHHHHHHHHhcCC---CchhhHHHH
Q 003409 69 TEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-ADE-V-IIVTSSLMKDMTSKTDMYRANAIRVLCRI---TDGTLLTQI 142 (822)
Q Consensus 69 s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~-~~~-~-lLviNsl~kDl~~~n~~vr~lALr~l~~I---~~~~~~~~l 142 (822)
..++..+..++.+++...|+..--.+..++.. +++ . -.+...+.+=..++++..|..|.+.++.+ ..+.+.+.+
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l 165 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL 165 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 44555556667788888898888888777654 222 1 12233333333577889998887776654 345667788
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhhcccChh--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcCh-HH----HHH
Q 003409 143 ERYLKQAIVDKNPVVASAALVSGIHLLQTTPE--IVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDR-LA----VSK 215 (822)
Q Consensus 143 ~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe--~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~-~~----i~~ 215 (822)
.+.+.+++.|.++.||+.|+-++.++.+..+. ....+++.+..++.|.++.|...|+..|..+...-+ .. +..
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 245 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999888765543 234577777788888888887777766666654321 11 222
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCC-CCchhhHHHHHHHhccCChhhHHHHHHHHhhccCC-Ch-----Hh
Q 003409 216 LVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQ-TGDRPFYDFLESCLRHKAEMVIFEAARAITELNGV-TN-----RE 288 (822)
Q Consensus 216 Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~-~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~-~~-----~~ 288 (822)
++..+.. ..++.......+.+..+.... .+ .....+++.+...++..++.|.-.|+.++-.+... +. ..
T Consensus 246 ~l~~~~~--d~~~~vR~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 321 (588)
T 1b3u_A 246 TLRQAAE--DKSWRVRYMVADKFTELQKAV--GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI 321 (588)
T ss_dssp HHHHHHT--CSSHHHHHHHHHTHHHHHHHH--CHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred HHHHHcc--CCCHHHHHHHHHHHHHHHHHh--CcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHH
Confidence 2223321 233223333444444332110 11 11245678888888888888988888877665321 11 23
Q ss_pred HhhHHHHHHHHhcCCCchhHHHHHHhhcc-------------------CcCCCCchhhHHHHHHHHhccCCcc----hHH
Q 003409 289 LTPAITVLQLFLSSSKPVLRFAAVRTLNK-------------------SLISDQNRSIATLAITTLLKTGNES----SVD 345 (822)
Q Consensus 289 ~~~a~~~L~~~l~s~~~n~ry~aL~~l~~-------------------~lL~d~d~sIr~~aL~lL~~l~ne~----Nv~ 345 (822)
.......+..+++++++.+|-.++..+.. .+++|++..+|..++..|-.++..- ...
T Consensus 322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 401 (588)
T 1b3u_A 322 MSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQ 401 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 45566778888888888899887766643 4568888999998887776665432 245
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCch--HHH
Q 003409 346 RLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLK--YRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDA--KEN 421 (822)
Q Consensus 346 ~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~--~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~--~~~ 421 (822)
.++..|..++.+.+...|..++..++.++..++.. ...++..+.++|.+ ....+...++..+..++...+.. ...
T Consensus 402 ~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 480 (588)
T 1b3u_A 402 SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD-HVYAIREAATSNLKKLVEKFGKEWAHAT 480 (588)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 67778888888888889999999999999876543 24677888888876 34568888899998888765432 344
Q ss_pred HHHHHHHHhhcCCchhHHHhhheecCCCCCCCCC---hHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhccc-c-chHHH
Q 003409 422 GLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSD---PSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVD-A-LKPRV 496 (822)
Q Consensus 422 ~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~---~~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~~-~-~~~~i 496 (822)
++..|.+.+.+. ....+..++|.+|..+..... ....+..+.+.+...++.||..++.++.+++...+ + ..+.+
T Consensus 481 llp~l~~~~~~~-~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 559 (588)
T 1b3u_A 481 IIPKVLAMSGDP-NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEV 559 (588)
T ss_dssp THHHHHHTTTCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHH
T ss_pred HHHHHHHHhhCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHH
Confidence 555555554433 356777788988887653221 12344555555566789999999999999987654 2 23578
Q ss_pred HHHHHHHhcCCC
Q 003409 497 FVLLRRCLYDGD 508 (822)
Q Consensus 497 ~~ll~~~~~d~d 508 (822)
..++.+...|.|
T Consensus 560 ~p~l~~l~~d~d 571 (588)
T 1b3u_A 560 KPILEKLTQDQD 571 (588)
T ss_dssp HHHHHHHTTCSS
T ss_pred HHHHHHHcCCCc
Confidence 888888766654
No 11
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.39 E-value=1.2e-11 Score=145.55 Aligned_cols=393 Identities=11% Similarity=0.105 Sum_probs=205.5
Q ss_pred hhhhcccCCccchh-----HHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHH---HHHHhcCCCchhhHHHHHHHH
Q 003409 75 VTKLFQSRDIGLRR-----MVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRAN---AIRVLCRITDGTLLTQIERYL 146 (822)
Q Consensus 75 v~kl~~s~d~~lKr-----l~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~l---ALr~l~~I~~~~~~~~l~~~v 146 (822)
+-+.+.++|...|+ +.|+.. +....+..+. .+.|=++++|+.+|-+ ++..+++. .++++..+...+
T Consensus 18 i~~~L~~~~~~~k~~~~~kli~~~~--~G~d~~~~~~---~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~e~~~l~~n~l 91 (591)
T 2vgl_B 18 LKAELNNEKKEKRKEAVKKVIAAMT--VGKDVSSLFP---DVVNCMQTDNLELKKLVYLYLMNYAKS-QPDMAIMAVNSF 91 (591)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHH--TTCCCGGGHH---HHHHTTSSSCHHHHHHHHHHHHHHHHH-SHHHHHTTHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHH--CCCChHHHHH---HHHHHhCCCCHHHHHHHHHHHHHHccc-CchHHHHHHHHH
Confidence 44568888876663 333322 2222222222 3334578889888844 44444442 367777778888
Q ss_pred HHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHH--HHHHHhc--C
Q 003409 147 KQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS--KLVTSLT--R 222 (822)
Q Consensus 147 ~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~--~Li~~l~--~ 222 (822)
++.+.|++|+||..|+-++.++. .|++.+...+.+..++.|+++.|...|...++.+...+|..+. .+++.+. .
T Consensus 92 ~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL 169 (591)
T 2vgl_B 92 VKDCEDPNPLIRALAVRTMGCIR--VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLI 169 (591)
T ss_dssp GGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTT
T ss_pred HHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHh
Confidence 88899999999999988888874 7888888888888999999999988887777766655433332 2333333 1
Q ss_pred CCCCChhHHHHHHHHHHhhhhcccCCCCC--c---hhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHH
Q 003409 223 GTVRSPLAQCLLIRYTTQVIREAATTQTG--D---RPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQ 297 (822)
Q Consensus 223 ~~~~~~w~~v~llr~l~~~~~~~~~d~~~--~---~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~ 297 (822)
. ..+|..+..-+..+...... +|+. . ...+..|...+...++-.....++++..+...++.........+.
T Consensus 170 ~-d~d~~V~~~A~~aL~~i~~~---~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~ 245 (591)
T 2vgl_B 170 A-DSNPMVVANAVAALSEISES---HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVT 245 (591)
T ss_dssp S-CSCHHHHHHHHHHHHHHTTS---CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHT
T ss_pred C-CCChhHHHHHHHHHHHHHhh---CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 1 33344433344444333222 1211 0 011222222222333333333333333332111222222222222
Q ss_pred HHhcCCCchhHHHHHHhhccCcCCCCchhhHHHHHHHHhccCC-----cchHHHHHHHHHH---hhhhcCHHHHHHHHHH
Q 003409 298 LFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGN-----ESSVDRLMKQITN---FMSDIADEFKIVVVEA 369 (822)
Q Consensus 298 ~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~n-----e~Nv~~Iv~eL~~---y~~~~~~~~k~~~v~a 369 (822)
.++++.|.+|+..|+.++..+++ ++-+..+++.+.. ++.+.+.+.|..++.+
T Consensus 246 --------------------~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~ 305 (591)
T 2vgl_B 246 --------------------PRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRN 305 (591)
T ss_dssp --------------------TCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHH
T ss_pred --------------------HHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 34556666666666666666542 2334433332222 2334566677777777
Q ss_pred HHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCCchhHHHhhheecCCC
Q 003409 370 IRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTE 449 (822)
Q Consensus 370 I~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy 449 (822)
++.++.++|......+..+..... .+..++....+.+..+. +++--+.++..|.+++.+. ..+.+..++|-||..
T Consensus 306 l~~i~~~~p~~~~~~~~~~~~~~~--d~~~Ir~~al~~L~~l~--~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~l 380 (591)
T 2vgl_B 306 INLIVQKRPEILKQEIKVFFVKYN--DPIYVKLEKLDIMIRLA--SQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRC 380 (591)
T ss_dssp HHHHHHHCCSTTTTCTTTTSCCTT--SCHHHHHHHHHHHHHTC--CSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHhheeccC--ChHHHHHHHHHHHHHHC--ChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 777777666543222222111111 12335555555554443 2223344666666666553 345555556666665
Q ss_pred CCCCC-ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhccccchHHHHHHHHHHh
Q 003409 450 GPKTS-DPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCL 504 (822)
Q Consensus 450 ~~~~~-~~~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~~~~~~~i~~ll~~~~ 504 (822)
+...+ +...++..+.+-+......++..++.++..+..+.|+.+..++.-|..++
T Consensus 381 a~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l 436 (591)
T 2vgl_B 381 AIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENL 436 (591)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTT
T ss_pred HHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHH
Confidence 54432 23455555555555556666666666666666666665544444443443
No 12
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.38 E-value=6.2e-11 Score=138.34 Aligned_cols=409 Identities=11% Similarity=0.102 Sum_probs=270.9
Q ss_pred hhhhhhhhcccCCccchhHHHHHHHHhCCCCcc--hhhhhhhHHhhcCCCCHHHHHHHHHHhcCC----CchhhHHHHHH
Q 003409 71 VFFAVTKLFQSRDIGLRRMVYLMIKELSPSADE--VIIVTSSLMKDMTSKTDMYRANAIRVLCRI----TDGTLLTQIER 144 (822)
Q Consensus 71 lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~--~lLviNsl~kDl~~~n~~vr~lALr~l~~I----~~~~~~~~l~~ 144 (822)
+...+.++.++++...|..+...+..+++.... .--+...+.+-++|+++.+|..|+++++.+ +.+...+.+.+
T Consensus 127 l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~ 206 (588)
T 1b3u_A 127 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIP 206 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHH
Confidence 344455566777888888777777666654222 112345566667899999999999999986 34456678899
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhhcccChh--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhc-ChHH-HHHHHH--
Q 003409 145 YLKQAIVDKNPVVASAALVSGIHLLQTTPE--IVKRWSNEVQEAVQSRAALVQFHALALLHQIRQN-DRLA-VSKLVT-- 218 (822)
Q Consensus 145 ~v~~~l~d~~p~VRk~A~la~~~l~~~~pe--~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~-d~~~-i~~Li~-- 218 (822)
.+.+++.|.++.||+.|+.++..+....++ ....+++.+..++.|.+..|...|...|..+... ++.. ...+++
T Consensus 207 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l 286 (588)
T 1b3u_A 207 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAF 286 (588)
T ss_dssp HHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHH
Confidence 999999999999999999999888765443 3346778888888898888888887777666542 1111 112222
Q ss_pred --HhcCCCCCChhHHHHHHHHHHhhhhcccCCCC-----CchhhHHHHHHHhccCChhhHHHHHHHHhhccCC-Ch-HhH
Q 003409 219 --SLTRGTVRSPLAQCLLIRYTTQVIREAATTQT-----GDRPFYDFLESCLRHKAEMVIFEAARAITELNGV-TN-REL 289 (822)
Q Consensus 219 --~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~-----~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~-~~-~~~ 289 (822)
-+. ..++.......+.+..+...- .+. ....+++.+...+++.+..|...++.++..+... .. ...
T Consensus 287 ~~~l~---d~~~~vr~~a~~~l~~~~~~~--~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~ 361 (588)
T 1b3u_A 287 QNLMK---DCEAEVRAAASHKVKEFCENL--SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTI 361 (588)
T ss_dssp HHHHT---CSSHHHHHHHHHHHHHHHHTS--CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHH
T ss_pred HHHhC---CCcHHHHHHHHHHHHHHHHHh--ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 222 344544444444444432220 121 2345778888888889999999999988877411 11 122
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHhhcc-------------------CcCCCCchhhHHHHHHHHhccCC----cchHHH
Q 003409 290 TPAITVLQLFLSSSKPVLRFAAVRTLNK-------------------SLISDQNRSIATLAITTLLKTGN----ESSVDR 346 (822)
Q Consensus 290 ~~a~~~L~~~l~s~~~n~ry~aL~~l~~-------------------~lL~d~d~sIr~~aL~lL~~l~n----e~Nv~~ 346 (822)
......+..++..+++++|..++..+.. .++.|++..+|..+++.+-.++. +.....
T Consensus 362 ~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 441 (588)
T 1b3u_A 362 EHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEK 441 (588)
T ss_dssp HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 3445667777888888999888766543 34578888899888888766542 222246
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCc--hHHHH
Q 003409 347 LMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKY--RSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPD--AKENG 422 (822)
Q Consensus 347 Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~--~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~--~~~~~ 422 (822)
++.-+..++.+.+.+.|..++.+++.++..+++.. ..++..+.+++. ..++.+...++..+..+....+. ....+
T Consensus 442 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~-~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~ 520 (588)
T 1b3u_A 442 LNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSG-DPNYLHRMTTLFCINVLSEVCGQDITTKHM 520 (588)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 78888888988889999999999999999876531 233344444443 34566777777777777654321 23445
Q ss_pred HHHHHHHhhcCCchhHHHhhheecCCCCCCCCCh---HHHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q 003409 423 LLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDP---SKYIRYIYNRVHLENATVRAAAVSTLAKFG 486 (822)
Q Consensus 423 l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~---~~~i~~i~~~~~~e~~~vr~~~ltal~K~~ 486 (822)
+..|...+.|. .++++..++|.+|+.+...... ...+..+..-....++.||..+..|+.++.
T Consensus 521 ~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 521 LPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHhhCCCC-CchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 66666666654 4678888899999887654321 122333333233458899999988887653
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.26 E-value=1.6e-08 Score=124.15 Aligned_cols=340 Identities=14% Similarity=0.127 Sum_probs=223.1
Q ss_pred hhhhHHHH-HhhhcCCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCC-Cc
Q 003409 25 EKGAVLQE-ARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-AD 102 (822)
Q Consensus 25 ~k~~~lqE-~r~f~~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~-~~ 102 (822)
+|..+.+. ++.+.++ + ...|..+..++..+...+ +. .....+...+.+++++.+...|..+...+..+++. .+
T Consensus 87 ~~~~ik~~ll~~l~~~--~-~~vr~~~a~~i~~ia~~~-~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 87 VTDFIKSECLNNIGDS--S-PLIRATVGILITTIASKG-EL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp HHHHHHHHHHTTTTCS--S-HHHHHHHHHHHHHHHHHT-TT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCC--C-HHHHHHHHHHHHHHHHhc-Cc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 34444444 3345443 2 244555777777666543 22 24456788888899999988888887766555542 11
Q ss_pred c---------hhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCch------hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHh
Q 003409 103 E---------VIIVTSSLMKDMTSKTDMYRANAIRVLCRITDG------TLLTQIERYLKQAIVDKNPVVASAALVSGIH 167 (822)
Q Consensus 103 ~---------~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~------~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~ 167 (822)
. .--++..+.+=++++++.+|..|+++++++... ...+.+.+.+.+.+.|.++.||+.|+-|+.+
T Consensus 162 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~ 241 (852)
T 4fdd_A 162 ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVM 241 (852)
T ss_dssp HHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 1 233556677778899999999999999987632 2345677888888999999999999999999
Q ss_pred hcccChhHHH----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcCh--H----HHHHHHH----HhcC---------CC
Q 003409 168 LLQTTPEIVK----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDR--L----AVSKLVT----SLTR---------GT 224 (822)
Q Consensus 168 l~~~~pe~v~----~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~--~----~i~~Li~----~l~~---------~~ 224 (822)
+...+|+.+. .+++.+..++.+.++.|...|+..+..++.... . .+.++++ .+.+ +.
T Consensus 242 l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d 321 (852)
T 4fdd_A 242 LLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGD 321 (852)
T ss_dssp HHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence 9998887754 456666677788888999899888887765321 1 1223333 2200 10
Q ss_pred ---------CCChhHHH----HHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChH----
Q 003409 225 ---------VRSPLAQC----LLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNR---- 287 (822)
Q Consensus 225 ---------~~~~w~~v----~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~---- 287 (822)
....|..- ..+..+....+ ......+++.+...+++.+..+..+|+.++..+......
T Consensus 322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-----~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~ 396 (852)
T 4fdd_A 322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYR-----DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP 396 (852)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHG-----GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG
T ss_pred cccccccccccccchHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH
Confidence 00234432 23333333221 123346778888888899999999999999999754433
Q ss_pred hHhhHHHHHHHHhcCCCchhHHHHHHhhcc----------------------CcCCCCchhhHHHHHHHHhccCCc----
Q 003409 288 ELTPAITVLQLFLSSSKPVLRFAAVRTLNK----------------------SLISDQNRSIATLAITTLLKTGNE---- 341 (822)
Q Consensus 288 ~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~----------------------~lL~d~d~sIr~~aL~lL~~l~ne---- 341 (822)
.+..++..|..++.++++.+|..+..++.+ ..+.|++..+|..|...|..++..
T Consensus 397 ~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~ 476 (852)
T 4fdd_A 397 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE 476 (852)
T ss_dssp GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 345677778888888999999988877654 334688889998888877766532
Q ss_pred --chHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 003409 342 --SSVDRLMKQITNFMSDIADEFKIVVVEAIRSLC 374 (822)
Q Consensus 342 --~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la 374 (822)
.-+..|+..|...+...+..-...++.+|+.++
T Consensus 477 l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 477 LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLA 511 (852)
T ss_dssp GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 124566666666555444444444555565555
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.25 E-value=1.7e-09 Score=121.93 Aligned_cols=267 Identities=14% Similarity=0.104 Sum_probs=172.2
Q ss_pred hhhhhHHhhcCCCCHHHHHHHHHHhcCC----Cchh---hHH--HHHHHHHHhhcCC-CHHHHHHHHHHHHhhcccChhH
Q 003409 106 IVTSSLMKDMTSKTDMYRANAIRVLCRI----TDGT---LLT--QIERYLKQAIVDK-NPVVASAALVSGIHLLQTTPEI 175 (822)
Q Consensus 106 LviNsl~kDl~~~n~~vr~lALr~l~~I----~~~~---~~~--~l~~~v~~~l~d~-~p~VRk~A~la~~~l~~~~pe~ 175 (822)
+++..+.+.++++++.+|-.|++.|.++ ..+. +++ .+.+.+.+.+.+. ++.||..|+-++..+....++.
T Consensus 20 ~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 20 VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp --CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 4566777778888888898888888775 2322 232 4777888888887 8999999999999988877664
Q ss_pred HH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHH---------HHHHHHHhcCCCCCChhHHHHHHHHHHhh
Q 003409 176 VK-----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLA---------VSKLVTSLTRGTVRSPLAQCLLIRYTTQV 241 (822)
Q Consensus 176 v~-----~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~---------i~~Li~~l~~~~~~~~w~~v~llr~l~~~ 241 (822)
.+ ..++.+..++.+.++.+...|+..|..+...++.. +..|+.-+. . ..++-.+...+..+..+
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-~-~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFS-K-QNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTT-S-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc-C-CCCHHHHHHHHHHHHHH
Confidence 43 36777888888888999999999898888765321 223333332 1 23444445555666554
Q ss_pred hhcccCCCC----CchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhH-----hhHHHHHHHHhcCCCchhHHHHH
Q 003409 242 IREAATTQT----GDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNREL-----TPAITVLQLFLSSSKPVLRFAAV 312 (822)
Q Consensus 242 ~~~~~~d~~----~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~-----~~a~~~L~~~l~s~~~n~ry~aL 312 (822)
.... +|. .....++.|..++++.+..|...|+.++.++....+... ..++..|..++.++++.+|..++
T Consensus 178 ~~~~--~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 255 (450)
T 2jdq_A 178 CRGK--SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPAL 255 (450)
T ss_dssp HCCS--SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHH
T ss_pred hCCC--CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHH
Confidence 3221 122 124577888888988889999999999999865333222 23556666777777777777766
Q ss_pred Hhhcc----------------------CcCCCCchhhHHHHHHHHhccC--CcchHHH-----HHHHHHHhhhhcCHHHH
Q 003409 313 RTLNK----------------------SLISDQNRSIATLAITTLLKTG--NESSVDR-----LMKQITNFMSDIADEFK 363 (822)
Q Consensus 313 ~~l~~----------------------~lL~d~d~sIr~~aL~lL~~l~--ne~Nv~~-----Iv~eL~~y~~~~~~~~k 363 (822)
+.+.. .++.+++..+|+.|+..|..++ ++.+... ++..|...+.+.+.+.|
T Consensus 256 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~ 335 (450)
T 2jdq_A 256 RAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTR 335 (450)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 66532 3445556666666666666555 2333332 23344455555556666
Q ss_pred HHHHHHHHHHHHh
Q 003409 364 IVVVEAIRSLCLK 376 (822)
Q Consensus 364 ~~~v~aI~~la~k 376 (822)
..++.+++.++..
T Consensus 336 ~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 336 KEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC
Confidence 6666666666654
No 15
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.22 E-value=5.1e-09 Score=128.56 Aligned_cols=382 Identities=14% Similarity=0.097 Sum_probs=242.6
Q ss_pred hhhhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCC-------chhhHHHHHHHHH
Q 003409 75 VTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRIT-------DGTLLTQIERYLK 147 (822)
Q Consensus 75 v~kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~-------~~~~~~~l~~~v~ 147 (822)
+.+...|+|...||-..-.+.++.. .++.....-.+..++++.++.+|-+|.-.|-+.. +++.-+.+-..+.
T Consensus 18 ~l~~~~s~d~~~r~~Ae~~L~~~~~-~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll 96 (852)
T 4fdd_A 18 LLKESQSPDTTIQRTVQQKLEQLNQ-YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECL 96 (852)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHh-CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 3444567788888888888866533 3343323334444557778888877765554422 3445556666777
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcccC-hhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Q 003409 148 QAIVDKNPVVASAALVSGIHLLQTT-PEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVR 226 (822)
Q Consensus 148 ~~l~d~~p~VRk~A~la~~~l~~~~-pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~ 226 (822)
+++.+.++.||++|+.++..+.+.. |+.-..+++.+.+++.+.++.+...|+..|..++...+..+.+
T Consensus 97 ~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~----------- 165 (852)
T 4fdd_A 97 NNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDS----------- 165 (852)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHH-----------
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhch-----------
Confidence 7777888888888888887776543 2222235555666677777777777777676666541111000
Q ss_pred ChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCC-hHh---HhhHHHHHHHHhcC
Q 003409 227 SPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVT-NRE---LTPAITVLQLFLSS 302 (822)
Q Consensus 227 ~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~-~~~---~~~a~~~L~~~l~s 302 (822)
.. -......++..+...+++.+..|..+|++++..+-... ... +...+..|..++++
T Consensus 166 -------------~~------~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d 226 (852)
T 4fdd_A 166 -------------DV------LDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGD 226 (852)
T ss_dssp -------------CS------SSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTC
T ss_pred -------------hh------hcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCC
Confidence 00 00111223344444556667778888888876653221 211 22445555566677
Q ss_pred CCchhHHHHHHhhcc---------------------CcCCCCchhhHHHHHHHHhccCCcch--------HHHHHHHHHH
Q 003409 303 SKPVLRFAAVRTLNK---------------------SLISDQNRSIATLAITTLLKTGNESS--------VDRLMKQITN 353 (822)
Q Consensus 303 ~~~n~ry~aL~~l~~---------------------~lL~d~d~sIr~~aL~lL~~l~ne~N--------v~~Iv~eL~~ 353 (822)
+++.+|..+++.+.. .++.|++..+|..|++.+..++.... +..++..+..
T Consensus 227 ~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~ 306 (852)
T 4fdd_A 227 EEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVN 306 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 777777777666543 34478889999999999999886533 3456666666
Q ss_pred hh-----------hhc-----------CHHHHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q 003409 354 FM-----------SDI-----------ADEFKIVVVEAIRSLCLKFPLK-YRSLMNFLSNILREEGGFEYKKAIVDSIVI 410 (822)
Q Consensus 354 y~-----------~~~-----------~~~~k~~~v~aI~~la~k~~~~-~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~ 410 (822)
.+ .+. +...|..+..+++.++..+++. ...++.++.+++.+. +..++..++..+..
T Consensus 307 ~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~-~~~~R~aa~~alg~ 385 (852)
T 4fdd_A 307 GMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHH-EWVVKESGILVLGA 385 (852)
T ss_dssp HTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHH
T ss_pred HcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 55 220 1124888999999999887753 345777777777653 55678888888888
Q ss_pred HHHhCCc----hHHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCC------CChHHHHHHHHhhccCCCHHHHHHHHH
Q 003409 411 LIRDIPD----AKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKT------SDPSKYIRYIYNRVHLENATVRAAAVS 480 (822)
Q Consensus 411 iv~~~p~----~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~------~~~~~~i~~i~~~~~~e~~~vr~~~lt 480 (822)
|....++ ....++..+...+.|. .+.++..++|.+|.++... ..-...+..+.+.+...++.||..+..
T Consensus 386 i~~~~~~~~~~~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~ 464 (852)
T 4fdd_A 386 IAEGCMQGMIPYLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS 464 (852)
T ss_dssp TTTTTHHHHGGGHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7764432 2355777777777664 5788888999999987632 223456667776666678999999999
Q ss_pred HHHHHhhcc
Q 003409 481 TLAKFGAMV 489 (822)
Q Consensus 481 al~K~~~~~ 489 (822)
|+..++..+
T Consensus 465 aL~~l~~~~ 473 (852)
T 4fdd_A 465 AFATLEEEA 473 (852)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987654
No 16
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.19 E-value=4.9e-10 Score=118.54 Aligned_cols=250 Identities=16% Similarity=0.085 Sum_probs=162.4
Q ss_pred hhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHH-
Q 003409 106 IVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQ- 184 (822)
Q Consensus 106 LviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~- 184 (822)
..++.+.+.|.|+|+.+|..|+++|+++++++. .+.+.+++.|.++.||..|+.++.++.. .++.+...++.+.
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~----~~~L~~~l~d~~~~vR~~A~~aL~~l~~-~~~~~~~l~~~L~~ 97 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGGQDA----VRLAIEFCSDKNYIRRDIGAFILGQIKI-CKKCEDNVFNILNN 97 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHH----HHHHHHHHTCSSHHHHHHHHHHHHHSCC-CTTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCCchH----HHHHHHHHcCCCHHHHHHHHHHHHHhcc-ccccchHHHHHHHH
Confidence 356888999999999999999999999997654 4556678889999999999999988753 2333444444444
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhcCh----HHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHH
Q 003409 185 EAVQSRAALVQFHALALLHQIRQNDR----LAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLE 260 (822)
Q Consensus 185 ~ll~d~~~~V~~~al~lL~~i~~~d~----~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~ 260 (822)
.++.|.++.|..+++..|..+...++ ..+..|+..+. .++++.....++.+..+ . ++ ..++.|.
T Consensus 98 ~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~--~---~~----~~~~~L~ 165 (280)
T 1oyz_A 98 MALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVI--N---DK----ATIPLLI 165 (280)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC------------CCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhc--C---CH----HHHHHHH
Confidence 34678888898888888887764322 22333333333 34555555555555543 1 12 1345555
Q ss_pred HHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHHHHHHHhccCC
Q 003409 261 SCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGN 340 (822)
Q Consensus 261 ~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~n 340 (822)
..+++.++.|...|+.++..+....+ .++..|. .++.|+|..+|..|+..|-.+++
T Consensus 166 ~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~L~--------------------~~l~d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 166 NLLKDPNGDVRNWAAFAININKYDNS----DIRDCFV--------------------EMLQDKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTCCCH----HHHHHHH--------------------HHTTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCHHHHHHHHHHHHhhccCcH----HHHHHHH--------------------HHhcCCCHHHHHHHHHHHHHhCC
Confidence 56666666666666666655532111 1112221 34567788888888888888888
Q ss_pred cchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHH
Q 003409 341 ESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSI 408 (822)
Q Consensus 341 e~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i 408 (822)
+..+..+++.|.. +++|..++.+++.+... .++..|.+++.+..+.++...+++.+
T Consensus 222 ~~~~~~L~~~l~d------~~vr~~a~~aL~~i~~~------~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 222 KRVLSVLCDELKK------NTVYDDIIEAAGELGDK------TLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp GGGHHHHHHHHTS------SSCCHHHHHHHHHHCCG------GGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred HhhHHHHHHHhcC------ccHHHHHHHHHHhcCch------hhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 8777777665542 23788888888887642 45777778887644444544444443
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.09 E-value=1.9e-08 Score=116.58 Aligned_cols=265 Identities=12% Similarity=0.065 Sum_probs=153.2
Q ss_pred hhhHHhhcCCCCHHHHHHHHHHhcCCCc----h---hhHH-HHHHHHHHhhcCC-CHHHHHHHHHHHHhhcccChhHHH-
Q 003409 108 TSSLMKDMTSKTDMYRANAIRVLCRITD----G---TLLT-QIERYLKQAIVDK-NPVVASAALVSGIHLLQTTPEIVK- 177 (822)
Q Consensus 108 iNsl~kDl~~~n~~vr~lALr~l~~I~~----~---~~~~-~l~~~v~~~l~d~-~p~VRk~A~la~~~l~~~~pe~v~- 177 (822)
+..+.+.|.++++.+|-.|+.+|.++.. + .+++ .+.+.+.+++.+. ++.||..|+.++.++....++...
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4455555667777777666666665422 1 1221 3566677777775 777777777777777766554433
Q ss_pred ----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHH---------HHHHHHHhcCCCCCChhHHHHHHHHHHhhhhc
Q 003409 178 ----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLA---------VSKLVTSLTRGTVRSPLAQCLLIRYTTQVIRE 244 (822)
Q Consensus 178 ----~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~---------i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~ 244 (822)
..++.+..++.+.++.|..+|+..|..+...++.. +..|+.-+. ..++-.+...+..+..+...
T Consensus 169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN---SNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGG---SCCHHHHHHHHHHHHHHHCC
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhc---cCCHHHHHHHHHHHHHHhCC
Confidence 23556666666667777777777777776543321 222333332 12333333334444443222
Q ss_pred ccCCCCC----chhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHh-----hHHHHHHHHhcCCCchhHHHHHHhh
Q 003409 245 AATTQTG----DRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELT-----PAITVLQLFLSSSKPVLRFAAVRTL 315 (822)
Q Consensus 245 ~~~d~~~----~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~-----~a~~~L~~~l~s~~~n~ry~aL~~l 315 (822)
. +|.. ...+++.|..+|.+.++.|...|+.++.++...++.... .++..|..++.++++.+|..|++.+
T Consensus 246 ~--~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L 323 (530)
T 1wa5_B 246 K--KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 323 (530)
T ss_dssp S--SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred C--CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence 0 1211 134567788888888888999999999888654333222 3455666677777777776666554
Q ss_pred cc----------------------CcCCCCchhhHHHHHHHHhccC--CcchHHHH-----HHHHHHhhhhcCHHHHHHH
Q 003409 316 NK----------------------SLISDQNRSIATLAITTLLKTG--NESSVDRL-----MKQITNFMSDIADEFKIVV 366 (822)
Q Consensus 316 ~~----------------------~lL~d~d~sIr~~aL~lL~~l~--ne~Nv~~I-----v~eL~~y~~~~~~~~k~~~ 366 (822)
.. .+|.+++..+|..|+..|..++ ++..+..+ +..|...+.+.+.+++..+
T Consensus 324 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 403 (530)
T 1wa5_B 324 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 32 3445666666666666666665 23333322 3455555555566666677
Q ss_pred HHHHHHHHHhC
Q 003409 367 VEAIRSLCLKF 377 (822)
Q Consensus 367 v~aI~~la~k~ 377 (822)
+.+++.++...
T Consensus 404 ~~aL~~l~~~~ 414 (530)
T 1wa5_B 404 CWAISNASSGG 414 (530)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhcC
Confidence 77776666543
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.08 E-value=4.3e-08 Score=113.38 Aligned_cols=356 Identities=15% Similarity=0.110 Sum_probs=206.3
Q ss_pred hhhhhHHhhcCCCCHHHHHHHHHHhcCCCc----h---hhH-HHHHHHHHHhhcCCC-HHHHHHHHHHHHhhcccChhHH
Q 003409 106 IVTSSLMKDMTSKTDMYRANAIRVLCRITD----G---TLL-TQIERYLKQAIVDKN-PVVASAALVSGIHLLQTTPEIV 176 (822)
Q Consensus 106 LviNsl~kDl~~~n~~vr~lALr~l~~I~~----~---~~~-~~l~~~v~~~l~d~~-p~VRk~A~la~~~l~~~~pe~v 176 (822)
..+..+.+-|.++|+.+|-.|+++|+++.. + .++ ..+++.+.+++.+.+ +.||..|+.++.++....++..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 445677777888899999888888776521 1 122 236778888888876 9999999999999988777644
Q ss_pred H-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHH---------HHHHHHHhcCCCCCChhHHHHHHHHHHhhh
Q 003409 177 K-----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLA---------VSKLVTSLTRGTVRSPLAQCLLIRYTTQVI 242 (822)
Q Consensus 177 ~-----~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~---------i~~Li~~l~~~~~~~~w~~v~llr~l~~~~ 242 (822)
. ..++.+..++.+.++.|..+|+.+|..+..+++.. +..|+..+. . ..++-.+...+..+..+.
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~-~-~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN-E-HTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC-T-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh-c-CCCHHHHHHHHHHHHHHH
Confidence 3 26777888888889999999999999888765431 333444342 1 234444444455555443
Q ss_pred hcccCCCCC----chhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHh-----hHHHHHHHHhcCCCchhHHHHHH
Q 003409 243 REAATTQTG----DRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELT-----PAITVLQLFLSSSKPVLRFAAVR 313 (822)
Q Consensus 243 ~~~~~d~~~----~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~-----~a~~~L~~~l~s~~~n~ry~aL~ 313 (822)
.. .|.. ....++.|..+|++.++.|...|+.++.++...+..... .++..|..+|.++++.++..|++
T Consensus 232 ~~---~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~ 308 (528)
T 4b8j_A 232 RG---KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR 308 (528)
T ss_dssp CS---SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHH
T ss_pred cC---CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHH
Confidence 22 1222 134678888888899999999999999998754433221 23455666666555555555555
Q ss_pred hhccCcCCCCchhhHHHHHHHHhccCC--cchHH-----HHHHHHHHhhhhc-CHHHHHHHHHHHHHHHHhCcccHH---
Q 003409 314 TLNKSLISDQNRSIATLAITTLLKTGN--ESSVD-----RLMKQITNFMSDI-ADEFKIVVVEAIRSLCLKFPLKYR--- 382 (822)
Q Consensus 314 ~l~~~lL~d~d~sIr~~aL~lL~~l~n--e~Nv~-----~Iv~eL~~y~~~~-~~~~k~~~v~aI~~la~k~~~~~~--- 382 (822)
.| ..++. +.... .++..|...+.+. +...+..++.+|+.++...+....
T Consensus 309 ~L--------------------~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~ 368 (528)
T 4b8j_A 309 TV--------------------GNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVI 368 (528)
T ss_dssp HH--------------------HHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HH--------------------HHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44 33322 11111 1234444444444 556666666666666643222211
Q ss_pred --HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHh-CCchHH-----HHHHHHHHHhhcCCchhHHHhhheecCCCCCC--
Q 003409 383 --SLMNFLSNILREEGGFEYKKAIVDSIVILIRD-IPDAKE-----NGLLHLCEFIEDCEFTYLSTQILHFLGTEGPK-- 452 (822)
Q Consensus 383 --~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~-~p~~~~-----~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~-- 452 (822)
.++..|+++|.. ++..++.+++.++..+... .|+... .++..|++.+.+ ..+++...++|.|+.....
T Consensus 369 ~~~~i~~L~~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 369 NAGIIGPLVNLLQT-AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC-PDIRIVTVCLEGLENILKVGE 446 (528)
T ss_dssp HTTCHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHH
Confidence 223455555554 3445556666666666554 333322 245566666554 2334444444444332110
Q ss_pred --------CCCh-HH------HHHHHHhhccCCCHHHHHHHHHHHHHHhhc
Q 003409 453 --------TSDP-SK------YIRYIYNRVHLENATVRAAAVSTLAKFGAM 488 (822)
Q Consensus 453 --------~~~~-~~------~i~~i~~~~~~e~~~vr~~~ltal~K~~~~ 488 (822)
..++ .. .+..+.+-...+++.++..+...+.+++..
T Consensus 447 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 447 TDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 0011 11 123333333346788888888888888764
No 19
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.07 E-value=2.2e-08 Score=118.36 Aligned_cols=333 Identities=11% Similarity=0.132 Sum_probs=215.5
Q ss_pred ccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCC--CchhhHHHHHHHHHHhhcCCCHHHHHHH
Q 003409 84 IGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRI--TDGTLLTQIERYLKQAIVDKNPVVASAA 161 (822)
Q Consensus 84 ~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I--~~~~~~~~l~~~v~~~l~d~~p~VRk~A 161 (822)
-.++|+.|+.+.-+ +.+...+ .+.|=++++|...|=++--+++.+ ..++.+--+...+++-+.|++|++|-.|
T Consensus 57 ~~l~Kli~l~~~G~-d~s~~~~----~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lA 131 (621)
T 2vgl_A 57 KYVCKLLFIFLLGH-DIDFGHM----EAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLA 131 (621)
T ss_dssp HHHHHHHHHHHHSC-CCCSCHH----HHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CCchhHH----HHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 34789999877332 1122222 223356788998886665555554 3467788888999999999999999999
Q ss_pred HHHHHhhcccChhHHHHHHHHHHHHh--cCCChhHHHHHHHHHHHHHhcChHHHH------HHHHHhcCCCCCChhHHHH
Q 003409 162 LVSGIHLLQTTPEIVKRWSNEVQEAV--QSRAALVQFHALALLHQIRQNDRLAVS------KLVTSLTRGTVRSPLAQCL 233 (822)
Q Consensus 162 ~la~~~l~~~~pe~v~~~~~~l~~ll--~d~~~~V~~~al~lL~~i~~~d~~~i~------~Li~~l~~~~~~~~w~~v~ 233 (822)
+-++.++ ..|++++...+.+..++ .|++|-|--.|+..++.+.+.+|..+. .+..-+. ..+|-.+.-
T Consensus 132 Lr~L~~i--~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~---d~d~~V~~~ 206 (621)
T 2vgl_A 132 LHCIANV--GSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN---DQHLGVVTA 206 (621)
T ss_dssp HHHHHHH--CCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTT---CSCHHHHHH
T ss_pred HHHhhcc--CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhC---CCCccHHHH
Confidence 9999988 46999999999999999 899999988887777777666554322 2222232 456655555
Q ss_pred HHHHHHhhhhcccCCCCC----chhhHHHHHHHhccC-------------ChhhHHHHHHHHhhccCC-ChHhHhhHHHH
Q 003409 234 LIRYTTQVIREAATTQTG----DRPFYDFLESCLRHK-------------AEMVIFEAARAITELNGV-TNRELTPAITV 295 (822)
Q Consensus 234 llr~l~~~~~~~~~d~~~----~~~l~~~l~~~L~~~-------------~~aV~~ea~~~i~~l~~~-~~~~~~~a~~~ 295 (822)
.+..+....+. +|.. ...+++.|..++... ++=.....++++..+... ++.........
T Consensus 207 a~~~l~~i~~~---~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~ 283 (621)
T 2vgl_A 207 ATSLITTLAQK---NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTEC 283 (621)
T ss_dssp HHHHHHHHHHH---CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 55555554444 4432 223445555555432 455666777777777532 23444444455
Q ss_pred HHHHhcC----C----------CchhHHHHHHhhcc----------------CcCCCCchhhHHHHHHHHhccCCcch--
Q 003409 296 LQLFLSS----S----------KPVLRFAAVRTLNK----------------SLISDQNRSIATLAITTLLKTGNESS-- 343 (822)
Q Consensus 296 L~~~l~s----~----------~~n~ry~aL~~l~~----------------~lL~d~d~sIr~~aL~lL~~l~ne~N-- 343 (822)
|..++++ + .+.+.|.+.+++.. .+|.++|..+|-.+|+.|..++....
T Consensus 284 L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~ 363 (621)
T 2vgl_A 284 LETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH 363 (621)
T ss_dssp HHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH
Confidence 5544421 1 12455666555422 45666777788888888877775542
Q ss_pred --HHHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHH
Q 003409 344 --VDRLMKQITNFMS-DIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKE 420 (822)
Q Consensus 344 --v~~Iv~eL~~y~~-~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~ 420 (822)
+......+...+. +.|..+|...++-+..++.. +....++..|.+++.. .+.+++.+++..|..+..++|...+
T Consensus 364 ~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~Iv~eL~~yl~~-~d~~~~~~~v~~I~~la~k~~~~~~ 440 (621)
T 2vgl_A 364 EAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQIVAEMLSYLET-ADYSIREEIVLKVAILAEKYAVDYT 440 (621)
T ss_dssp HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHCSSTH
T ss_pred HHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 2222233444455 66777788888777777744 5567777777777775 3556788888888888878777777
Q ss_pred HHHHHHHHHhhc
Q 003409 421 NGLLHLCEFIED 432 (822)
Q Consensus 421 ~~l~~L~~~l~~ 432 (822)
..+..|.+++..
T Consensus 441 ~~v~~Ll~ll~~ 452 (621)
T 2vgl_A 441 WYVDTILNLIRI 452 (621)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777777754
No 20
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.05 E-value=1.4e-08 Score=123.43 Aligned_cols=338 Identities=10% Similarity=0.088 Sum_probs=221.3
Q ss_pred hhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhH---H--HHHHHH
Q 003409 108 TSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEI---V--KRWSNE 182 (822)
Q Consensus 108 iNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~---v--~~~~~~ 182 (822)
+..+.++|.++++.+|..|++.++.+....+....++.+.+++.+.++.||.+|+.++.++....+.. + ...++.
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~ 196 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 196 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH
Confidence 56788999999999999999999988777788889999999999999999999999999987643221 1 135555
Q ss_pred HHHHhcC-CChhHHHHHHHHHHHHHhcChH--------HHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCc-
Q 003409 183 VQEAVQS-RAALVQFHALALLHQIRQNDRL--------AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGD- 252 (822)
Q Consensus 183 l~~ll~d-~~~~V~~~al~lL~~i~~~d~~--------~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~- 252 (822)
+..+|.+ .++.+..+|+..|..+...+.. .+..|+.-+. ..++-.+...+..+..+... ++...
T Consensus 197 Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~---~~~~~v~~~A~~aL~nLa~~---~~~~~~ 270 (780)
T 2z6g_A 197 IVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG---SPVDSVLFHAITTLHNLLLH---QEGAKM 270 (780)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHH---STTHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhCC---ChhhHH
Confidence 5566653 4888999999888887654211 1233343333 23455565555655554333 22222
Q ss_pred ----hhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhH-----hhHHHHHHHHhcCCCchh-HHHH---HHhhcc--
Q 003409 253 ----RPFYDFLESCLRHKAEMVIFEAARAITELNGVTNREL-----TPAITVLQLFLSSSKPVL-RFAA---VRTLNK-- 317 (822)
Q Consensus 253 ----~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~-----~~a~~~L~~~l~s~~~n~-ry~a---L~~l~~-- 317 (822)
...++.|..+|++.+..|.-.|+.++..+.......+ ..++..|..++.+.++.. +..+ |..+..
T Consensus 271 ~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~ 350 (780)
T 2z6g_A 271 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 350 (780)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh
Confidence 2345677788888776676666666655532122211 235566666776655432 2222 222211
Q ss_pred ----------------CcCCCCchhhHHHHHHHHhccCCcc----hHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhC
Q 003409 318 ----------------SLISDQNRSIATLAITTLLKTGNES----SVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKF 377 (822)
Q Consensus 318 ----------------~lL~d~d~sIr~~aL~lL~~l~ne~----Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~ 377 (822)
.++.+.+..+++.++..|..++... ....++..|...+.+.+.+.+..++.+++.|+...
T Consensus 351 ~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~ 430 (780)
T 2z6g_A 351 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 430 (780)
T ss_dssp THHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 5678888889999999998886443 35678888888888888999999999999998764
Q ss_pred cccHH-----HHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHhCCchH--------HHHHHHHHHHhhcCCchhHHHhhh
Q 003409 378 PLKYR-----SLMNFLSNILREEGGF-EYKKAIVDSIVILIRDIPDAK--------ENGLLHLCEFIEDCEFTYLSTQIL 443 (822)
Q Consensus 378 ~~~~~-----~~v~~l~~lL~~~g~~-~v~~~iv~~i~~iv~~~p~~~--------~~~l~~L~~~l~~~~~~~~~~~i~ 443 (822)
+.... -.+..|+++|...++. .+...++..+..|...+++.. ..++..|.+.+.+...++++..++
T Consensus 431 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~ 510 (780)
T 2z6g_A 431 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHH
Confidence 43222 3567888888764443 577777888888766566531 234677788887766668888889
Q ss_pred eecCCCCC
Q 003409 444 HFLGTEGP 451 (822)
Q Consensus 444 wiLGEy~~ 451 (822)
|.||..+.
T Consensus 511 ~aL~nLa~ 518 (780)
T 2z6g_A 511 GLIRNLAL 518 (780)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhc
Confidence 99888754
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.99 E-value=5.9e-08 Score=112.35 Aligned_cols=300 Identities=14% Similarity=0.092 Sum_probs=211.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhhccc--Chh---HHH-HHHHHHHHHhcCC-ChhHHHHHHHHHHHHHhcChHH---
Q 003409 143 ERYLKQAIVDKNPVVASAALVSGIHLLQT--TPE---IVK-RWSNEVQEAVQSR-AALVQFHALALLHQIRQNDRLA--- 212 (822)
Q Consensus 143 ~~~v~~~l~d~~p~VRk~A~la~~~l~~~--~pe---~v~-~~~~~l~~ll~d~-~~~V~~~al~lL~~i~~~d~~~--- 212 (822)
++.+.+.|.+.++.+|..|+.++.++... .|. +++ ..++.+.+++.+. ++.++..|+..|..+...++..
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 56677778888999999999999998754 332 233 4778888889886 8999999999999988754322
Q ss_pred ------HHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCc-----hhhHHHHHHHhccCChhhHHHHHHHHhhc
Q 003409 213 ------VSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGD-----RPFYDFLESCLRHKAEMVIFEAARAITEL 281 (822)
Q Consensus 213 ------i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~-----~~l~~~l~~~L~~~~~aV~~ea~~~i~~l 281 (822)
+..|+.-+. ..++..+...+..+..+... ++... ...++.|..+|++.+..|...|+.++..+
T Consensus 169 ~~~~g~i~~Lv~lL~---~~~~~vr~~A~~aL~~l~~~---~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 169 VVDADAVPLFIQLLY---TGSVEVKEQAIWALGNVAGD---STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHTTCHHHHHHHHH---HCCHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhCC---CccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 233343333 24566666666666665322 12211 23567788888888888999999999888
Q ss_pred cCCC-----hHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc----------------------CcCCCCchhhHHHHHHH
Q 003409 282 NGVT-----NRELTPAITVLQLFLSSSKPVLRFAAVRTLNK----------------------SLISDQNRSIATLAITT 334 (822)
Q Consensus 282 ~~~~-----~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~----------------------~lL~d~d~sIr~~aL~l 334 (822)
.... ......++..|..++.++++.++..++..|.. .++.+++..++..|+..
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~ 322 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA 322 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred hCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHH
Confidence 5321 12345677888888988888888776665532 56688889999999999
Q ss_pred HhccCCc--chHH-----HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHH-----HHHHHHHHHHhhcCCcchHH
Q 003409 335 LLKTGNE--SSVD-----RLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYR-----SLMNFLSNILREEGGFEYKK 402 (822)
Q Consensus 335 L~~l~ne--~Nv~-----~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~-----~~v~~l~~lL~~~g~~~v~~ 402 (822)
|..++.. .... .++..|..++.+.+...|..++.+|+.++...+.... .++..|+++|.. ++..++.
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~ 401 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV-AEYKTKK 401 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH-SCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc-CCHHHHH
Confidence 9988754 3333 2456777788887889999999999999975443322 245678888875 5677888
Q ss_pred HHHHHHHHHHHhC-C--chHH-----HHHHHHHHHhhcCCchhHHHhhheecCCCC
Q 003409 403 AIVDSIVILIRDI-P--DAKE-----NGLLHLCEFIEDCEFTYLSTQILHFLGTEG 450 (822)
Q Consensus 403 ~iv~~i~~iv~~~-p--~~~~-----~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~ 450 (822)
.+...+..+.... | +... .++..|+..+.+. .++++..++|.|+...
T Consensus 402 ~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 402 EACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA-DNRIIEVTLDALENIL 456 (530)
T ss_dssp HHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 8888999888753 3 3322 2567777777653 5677777888887653
No 22
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.98 E-value=4.2e-07 Score=111.01 Aligned_cols=455 Identities=11% Similarity=0.111 Sum_probs=267.2
Q ss_pred hHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccC-CccchhHHHHHHHHhCCC-Cc-------chhhhhhhHHhhcC
Q 003409 46 CSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSR-DIGLRRMVYLMIKELSPS-AD-------EVIIVTSSLMKDMT 116 (822)
Q Consensus 46 ~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~-d~~lKrl~YL~l~~~~~~-~~-------~~lLviNsl~kDl~ 116 (822)
.|..+..+|..+...+ ++......++..+...+.++ +...|..+...+..+++. .+ ..--+...+.+=+.
T Consensus 111 vr~~~~~~l~~i~~~~-~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~ 189 (861)
T 2bpt_A 111 IANAAAQLIAAIADIE-LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQ 189 (861)
T ss_dssp HHHHHHHHHHHHHHHH-GGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhh-CcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhc
Confidence 3443555555544321 22113456778888888887 877777766655555432 11 12233455566667
Q ss_pred CC--CHHHHHHHHHHhcCC---Cchhh-----HHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH-----HHHH
Q 003409 117 SK--TDMYRANAIRVLCRI---TDGTL-----LTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSN 181 (822)
Q Consensus 117 ~~--n~~vr~lALr~l~~I---~~~~~-----~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~-----~~~~ 181 (822)
++ ++.+|..|+++++++ ....+ ...+.+.+.+.+.+.++-||+.|+-++.++...+|+.+. .+++
T Consensus 190 ~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~ 269 (861)
T 2bpt_A 190 STETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYA 269 (861)
T ss_dssp TTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 899999999999874 22221 245788888889999999999999999888776665433 4445
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcC---------------------hHHHHHHHHH----hcCCC---CCChhHHH-
Q 003409 182 EVQEAVQSRAALVQFHALALLHQIRQND---------------------RLAVSKLVTS----LTRGT---VRSPLAQC- 232 (822)
Q Consensus 182 ~l~~ll~d~~~~V~~~al~lL~~i~~~d---------------------~~~i~~Li~~----l~~~~---~~~~w~~v- 232 (822)
.+...+.+.+..|...|+..+..+.... ...+..+++. +.... .-..|..-
T Consensus 270 ~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~ 349 (861)
T 2bpt_A 270 LTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSM 349 (861)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHH
Confidence 5556677888888888887777665431 0112333432 22110 01235332
Q ss_pred ---HHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCCh-H----hHhhHHHHHHHHhcCCC
Q 003409 233 ---LLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTN-R----ELTPAITVLQLFLSSSK 304 (822)
Q Consensus 233 ---~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~-~----~~~~a~~~L~~~l~s~~ 304 (822)
..+..+...++ ......+++.+...+++.+..+...|+.++..+..... . .+...+..|...+.+++
T Consensus 350 ~a~~~L~~l~~~~~-----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~ 424 (861)
T 2bpt_A 350 SAGACLQLFAQNCG-----NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQS 424 (861)
T ss_dssp HHHHHHHHHHHHHG-----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSC
T ss_pred HHHHHHHHHHHHcc-----HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCc
Confidence 23333332221 12345677888888888888899999999988864322 2 23445666677777888
Q ss_pred chhHHHHHHhhcc-----------------------CcCCCCchhhHHHHHHHHhccCCc----------chHHHHHHHH
Q 003409 305 PVLRFAAVRTLNK-----------------------SLISDQNRSIATLAITTLLKTGNE----------SSVDRLMKQI 351 (822)
Q Consensus 305 ~n~ry~aL~~l~~-----------------------~lL~d~d~sIr~~aL~lL~~l~ne----------~Nv~~Iv~eL 351 (822)
+.+|..++..+.+ ..+.|+ ..+|..+...|..++.. .-+..|+..|
T Consensus 425 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L 503 (861)
T 2bpt_A 425 LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGL 503 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 8899888766543 233554 56776666665544321 3456777777
Q ss_pred HHhhhhc--CHHHHHHHHHHHHHHHHhCcccHHHHHH----HHHHHHhhc--------------CCcchHHHHHHHHHHH
Q 003409 352 TNFMSDI--ADEFKIVVVEAIRSLCLKFPLKYRSLMN----FLSNILREE--------------GGFEYKKAIVDSIVIL 411 (822)
Q Consensus 352 ~~y~~~~--~~~~k~~~v~aI~~la~k~~~~~~~~v~----~l~~lL~~~--------------g~~~v~~~iv~~i~~i 411 (822)
...+.+. +...|..++.+++.++...+.....+++ .+++.|... ....+...+...+..+
T Consensus 504 ~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l 583 (861)
T 2bpt_A 504 IGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAV 583 (861)
T ss_dssp HHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHH
Confidence 7777633 3678999999999999888765443333 344444321 0112445566777777
Q ss_pred HHhCCc----hHHHHHHHHHHHhhcCCchhHHHhhheecCCCC----CCC-CChHHHHHHHHhhccCCCHHHHHHHHHHH
Q 003409 412 IRDIPD----AKENGLLHLCEFIEDCEFTYLSTQILHFLGTEG----PKT-SDPSKYIRYIYNRVHLENATVRAAAVSTL 482 (822)
Q Consensus 412 v~~~p~----~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~----~~~-~~~~~~i~~i~~~~~~e~~~vr~~~ltal 482 (822)
++..++ ....++..+.+.+.+.....++..+++.+|... ... +--...+..+.+.+...++.+|..++.++
T Consensus 584 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l 663 (861)
T 2bpt_A 584 IRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFI 663 (861)
T ss_dssp HHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 776543 233456666666655432133333333333221 111 11223445555555556778998888887
Q ss_pred HHHhhccc-cch---HHHHHHHHHHhcCC
Q 003409 483 AKFGAMVD-ALK---PRVFVLLRRCLYDG 507 (822)
Q Consensus 483 ~K~~~~~~-~~~---~~i~~ll~~~~~d~ 507 (822)
..++...+ .+. +.+...+-..+.+.
T Consensus 664 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 692 (861)
T 2bpt_A 664 ADISNSLEEDFRRYSDAMMNVLAQMISNP 692 (861)
T ss_dssp HHHHHHTGGGGHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhchhccchHHHHHHHHHHHhCCc
Confidence 77766553 333 33444444455443
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.96 E-value=1.3e-07 Score=106.22 Aligned_cols=301 Identities=12% Similarity=0.061 Sum_probs=213.1
Q ss_pred hhhhhhhcccCCccchhHHHHHHHHhCC--CCc---chh---hhhhhHHhhcCCC-CHHHHHHHHHHhcCCCc--hhhH-
Q 003409 72 FFAVTKLFQSRDIGLRRMVYLMIKELSP--SAD---EVI---IVTSSLMKDMTSK-TDMYRANAIRVLCRITD--GTLL- 139 (822)
Q Consensus 72 f~~v~kl~~s~d~~lKrl~YL~l~~~~~--~~~---~~l---LviNsl~kDl~~~-n~~vr~lALr~l~~I~~--~~~~- 139 (822)
...+++.++|+|...|......+..++. ..+ ..+ =++..|.+=|.++ ++.+|-.|+++|+++.. ++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4456667788888888888888766532 111 111 2456666777777 89999999999998765 3322
Q ss_pred ----HHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH-----HHHHHHHHHhcC-CChhHHHHHHHHHHHHHhcC
Q 003409 140 ----TQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQS-RAALVQFHALALLHQIRQND 209 (822)
Q Consensus 140 ----~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~-----~~~~~l~~ll~d-~~~~V~~~al~lL~~i~~~d 209 (822)
..+.+.+.+++.+.++.||..|+.++..+....++... ..++.+..++.+ .++.|..+|+..|..+....
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 24788899999999999999999999999887765432 356777788874 67899999999999888543
Q ss_pred -h--------HHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCC-----chhhHHHHHHHhccCChhhHHHHH
Q 003409 210 -R--------LAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTG-----DRPFYDFLESCLRHKAEMVIFEAA 275 (822)
Q Consensus 210 -~--------~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~-----~~~l~~~l~~~L~~~~~aV~~ea~ 275 (822)
+ ..+..|+.-+. ..++..+......+..+... .+.. ...+++.|..+|++.+..|...|+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 255 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLF---VSDTDVLADACWALSYLSDG---PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPAL 255 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHTSS---SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHCC---CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHH
Confidence 1 23444444443 33455555555555554221 1111 123567788888888999999999
Q ss_pred HHHhhccCCChHhH-----hhHHHHHHHHhcCCCchhHHHHHHhhcc----------------------CcCCCCchhhH
Q 003409 276 RAITELNGVTNREL-----TPAITVLQLFLSSSKPVLRFAAVRTLNK----------------------SLISDQNRSIA 328 (822)
Q Consensus 276 ~~i~~l~~~~~~~~-----~~a~~~L~~~l~s~~~n~ry~aL~~l~~----------------------~lL~d~d~sIr 328 (822)
+++..+....+... ..++..|..++.++++.+|..|+..+.. .++.+++..+|
T Consensus 256 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~ 335 (450)
T 2jdq_A 256 RAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTR 335 (450)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 99999875433321 2467788889998888999888776643 44578888999
Q ss_pred HHHHHHHhccCC---cchHHH-----HHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCc
Q 003409 329 TLAITTLLKTGN---ESSVDR-----LMKQITNFMSDIADEFKIVVVEAIRSLCLKFP 378 (822)
Q Consensus 329 ~~aL~lL~~l~n---e~Nv~~-----Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~ 378 (822)
+.|...|..++. ++++.. +++.|...+.+.+.+++..++.++..++...+
T Consensus 336 ~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 336 KEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 999999988863 455554 44667778888788999999999999987533
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.94 E-value=2.5e-07 Score=106.91 Aligned_cols=318 Identities=11% Similarity=0.060 Sum_probs=205.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhhcccCh----h-HHH-HHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhcChHH---
Q 003409 143 ERYLKQAIVDKNPVVASAALVSGIHLLQTTP----E-IVK-RWSNEVQEAVQSRA-ALVQFHALALLHQIRQNDRLA--- 212 (822)
Q Consensus 143 ~~~v~~~l~d~~p~VRk~A~la~~~l~~~~p----e-~v~-~~~~~l~~ll~d~~-~~V~~~al~lL~~i~~~d~~~--- 212 (822)
++.+.+.+.+.++.+|..|+.++.++....+ + ++. ..++.+.+++.+.+ +.++..|+..|..+...++..
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5667777888899999999999999865432 2 222 47778888888776 899999999999988765432
Q ss_pred ------HHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchh-----hHHHHHHHh-ccCChhhHHHHHHHHhh
Q 003409 213 ------VSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRP-----FYDFLESCL-RHKAEMVIFEAARAITE 280 (822)
Q Consensus 213 ------i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~-----l~~~l~~~L-~~~~~aV~~ea~~~i~~ 280 (822)
+..|+.-+. ..++-.+...+..+..+... ++..... .+..|..+| .+.+..+...|+.++..
T Consensus 156 ~~~~g~i~~L~~lL~---~~~~~v~~~a~~aL~~l~~~---~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLG---SSSDDVREQAVWALGNVAGD---SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHT---CHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHhc---CCCHHHHHHHHHHHHHHhCC---ChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 333444343 23454444555555554322 2221221 345555666 45667788888888887
Q ss_pred ccCCC----hHhHhhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHHHHHHHhccCCcch--HH-----HHHH
Q 003409 281 LNGVT----NRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESS--VD-----RLMK 349 (822)
Q Consensus 281 l~~~~----~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~ne~N--v~-----~Iv~ 349 (822)
+.... ......++..|..++.++++.++..+ +..|..++...+ +. .++.
T Consensus 230 L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a--------------------~~aL~~l~~~~~~~~~~~~~~g~v~ 289 (528)
T 4b8j_A 230 FCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDA--------------------CWALSYLSDGTNDKIQAVIEAGVCP 289 (528)
T ss_dssp HHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHH--------------------HHHHHHHTSSCHHHHHHHHHTTCHH
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHH--------------------HHHHHHHHcCCHHHHHHHHHcCHHH
Confidence 75321 12234455555555555555554444 444444443222 11 2456
Q ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHH-----HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHH----
Q 003409 350 QITNFMSDIADEFKIVVVEAIRSLCLKFPLKYR-----SLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKE---- 420 (822)
Q Consensus 350 eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~-----~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~---- 420 (822)
.|...+.+.+...+..++.+++.++...+.... -.+..|+.+|.......+..+++..+..+....++...
T Consensus 290 ~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~ 369 (528)
T 4b8j_A 290 RLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVIN 369 (528)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777889999999999999975544332 24788999998642566888888899999876665433
Q ss_pred -HHHHHHHHHhhcCCchhHHHhhheecCCCCCCC-CChH------HHHHHHHhhccCCCHHHHHHHHHHHHHHhh
Q 003409 421 -NGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKT-SDPS------KYIRYIYNRVHLENATVRAAAVSTLAKFGA 487 (822)
Q Consensus 421 -~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~-~~~~------~~i~~i~~~~~~e~~~vr~~~ltal~K~~~ 487 (822)
.++..|++.+.+. .++++..++|.||..+... +.-. ..+..+.+-+...++.++..++.++..+..
T Consensus 370 ~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 370 AGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp TTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3567888888765 5688888889988765431 1111 234566666666788899888888777654
No 25
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.92 E-value=1.9e-07 Score=113.99 Aligned_cols=392 Identities=12% Similarity=0.073 Sum_probs=223.5
Q ss_pred ccCCccchhHHHHHHHHhCCC-Ccchh-hhhhhHHhhcCCCCHHHHHHHHHHhcCCC-------------------chhh
Q 003409 80 QSRDIGLRRMVYLMIKELSPS-ADEVI-IVTSSLMKDMTSKTDMYRANAIRVLCRIT-------------------DGTL 138 (822)
Q Consensus 80 ~s~d~~lKrl~YL~l~~~~~~-~~~~l-LviNsl~kDl~~~n~~vr~lALr~l~~I~-------------------~~~~ 138 (822)
.|+|...|+-.--++.++... .+... ....-+.+ .+.++.+|-+|...|-+.. +++.
T Consensus 15 ~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~--~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~ 92 (861)
T 2bpt_A 15 LSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID--ENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEA 92 (861)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC--TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHH
T ss_pred cCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHH
Confidence 677888888888888665432 23322 22233322 2357889988888877753 3345
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHhhccc-Chh-HHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHhcChHHHHH
Q 003409 139 LTQIERYLKQAIVDKNPVVASAALVSGIHLLQT-TPE-IVKRWSNEVQEAVQSR-AALVQFHALALLHQIRQNDRLAVSK 215 (822)
Q Consensus 139 ~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~-~pe-~v~~~~~~l~~ll~d~-~~~V~~~al~lL~~i~~~d~~~i~~ 215 (822)
.+.+-..+.+++.+.++.||++++.++..+... .|. .-..+++.+.+.+.+. ++.+...|+.++..+...-+.
T Consensus 93 ~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~---- 168 (861)
T 2bpt_A 93 KNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADP---- 168 (861)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSST----
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCh----
Confidence 556667777888899999999999988766432 231 2233455566667666 777777777777666543100
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccC--ChhhHHHHHHHHhhccCCC------hH
Q 003409 216 LVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHK--AEMVIFEAARAITELNGVT------NR 287 (822)
Q Consensus 216 Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~--~~aV~~ea~~~i~~l~~~~------~~ 287 (822)
.+ |.+ ......+++.+...+.+. +..|...|++++..+-..- ..
T Consensus 169 ------------~~------~~~----------~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 220 (861)
T 2bpt_A 169 ------------QS------QAL----------VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREG 220 (861)
T ss_dssp ------------TS------STT----------GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHH
T ss_pred ------------hh------hHH----------HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChh
Confidence 00 000 000112223333333332 3334444444433321000 00
Q ss_pred hHhhHHHHHHHHhcCCCchhHHHHHHhhcc----------------------CcCCCCchhhHHHHHHHHhccCCcc---
Q 003409 288 ELTPAITVLQLFLSSSKPVLRFAAVRTLNK----------------------SLISDQNRSIATLAITTLLKTGNES--- 342 (822)
Q Consensus 288 ~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~----------------------~lL~d~d~sIr~~aL~lL~~l~ne~--- 342 (822)
........|..++.++++.+|-.+++.+.. ..+.|.+..+|..+++.+..++...
T Consensus 221 ~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 300 (861)
T 2bpt_A 221 ERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI 300 (861)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 011122233333333444444333333221 2346777888888888887665432
Q ss_pred --------------------hHHHHHHHHHHhhhhc-------CHHHHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHhh
Q 003409 343 --------------------SVDRLMKQITNFMSDI-------ADEFKIVVVEAIRSLCLKFPLK-YRSLMNFLSNILRE 394 (822)
Q Consensus 343 --------------------Nv~~Iv~eL~~y~~~~-------~~~~k~~~v~aI~~la~k~~~~-~~~~v~~l~~lL~~ 394 (822)
.+..++..|...+.+. +...|..+...++.++..++.. ...+++++.+.+.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~ 380 (861)
T 2bpt_A 301 AYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA 380 (861)
T ss_dssp HHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC
T ss_pred hhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCC
Confidence 2245666666666542 2368899999999999988743 45677777777764
Q ss_pred cCCcchHHHHHHHHHHHHHhCC-ch----HHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCC-------CChHHHHHH
Q 003409 395 EGGFEYKKAIVDSIVILIRDIP-DA----KENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKT-------SDPSKYIRY 462 (822)
Q Consensus 395 ~g~~~v~~~iv~~i~~iv~~~p-~~----~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~-------~~~~~~i~~ 462 (822)
.+..++..++..+..+..... +. -..++..|+..+.|. .+.++..++|.+|.++... ..-...+..
T Consensus 381 -~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~ 458 (861)
T 2bpt_A 381 -DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQA 458 (861)
T ss_dssp -SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHH
T ss_pred -CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH
Confidence 345577777777777775432 21 234566666666654 5778888999999887542 223455666
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHhhccc-----cc---hHHHHHHHHHHhcCCC
Q 003409 463 IYNRVHLENATVRAAAVSTLAKFGAMVD-----AL---KPRVFVLLRRCLYDGD 508 (822)
Q Consensus 463 i~~~~~~e~~~vr~~~ltal~K~~~~~~-----~~---~~~i~~ll~~~~~d~d 508 (822)
+.+.+.. ++.||..+..++..+...++ .+ -+.+...+.+.+.+.|
T Consensus 459 l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d 511 (861)
T 2bpt_A 459 CLIGLQD-HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRID 511 (861)
T ss_dssp HHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSC
T ss_pred HHHHhcc-ChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcC
Confidence 6655543 48899988888887765432 22 2345555555555444
No 26
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.92 E-value=1.4e-06 Score=106.40 Aligned_cols=432 Identities=11% Similarity=0.083 Sum_probs=242.9
Q ss_pred hhhhhhhhhhhcccC--CccchhHHHHHHHHhCCC-C-----cchhhhhhhHHhhcCCC--CHHHHHHHHHHhcCCCc--
Q 003409 68 ATEVFFAVTKLFQSR--DIGLRRMVYLMIKELSPS-A-----DEVIIVTSSLMKDMTSK--TDMYRANAIRVLCRITD-- 135 (822)
Q Consensus 68 ~s~lf~~v~kl~~s~--d~~lKrl~YL~l~~~~~~-~-----~~~lLviNsl~kDl~~~--n~~vr~lALr~l~~I~~-- 135 (822)
...++..+...+.++ +...|+.+...+..+++. . +..--+...+.+-+.++ ++.+|..|+++++++..
T Consensus 126 w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 455677777888888 877787777666555432 1 11223445566666666 78999999999987532
Q ss_pred -hhh-----HHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHH
Q 003409 136 -GTL-----LTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQSRAALVQFHALALLHQ 204 (822)
Q Consensus 136 -~~~-----~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~-----~~~~~l~~ll~d~~~~V~~~al~lL~~ 204 (822)
..+ ...+.+.+.+.+.+.++.||+.|+-++..+...+|+.+. .+++.+...+.+.++.|...|+..+..
T Consensus 206 ~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~ 285 (876)
T 1qgr_A 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 111 134777788888889999999999999988877765443 445555555667778888888776666
Q ss_pred HHhcCh-------------------------HHHHHHHHH----hcCC---CCCChhHH----HHHHHHHHhhhhcccCC
Q 003409 205 IRQNDR-------------------------LAVSKLVTS----LTRG---TVRSPLAQ----CLLIRYTTQVIREAATT 248 (822)
Q Consensus 205 i~~~d~-------------------------~~i~~Li~~----l~~~---~~~~~w~~----v~llr~l~~~~~~~~~d 248 (822)
+..... ..+..+++. +... .....|.. ...+..+....++
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---- 361 (876)
T 1qgr_A 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---- 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG----
T ss_pred HHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH----
Confidence 543210 012333332 2110 00123432 2334434332211
Q ss_pred CCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCCh-H----hHhhHHHHHHHHhcCCCchhHHHHHHhhcc------
Q 003409 249 QTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTN-R----ELTPAITVLQLFLSSSKPVLRFAAVRTLNK------ 317 (822)
Q Consensus 249 ~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~-~----~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~------ 317 (822)
.....+++.+...+++.+..+...|+.++..+..... . .+..++..|...+.++++.+|..|+..+.+
T Consensus 362 -~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 362 -DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp -GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred -hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc
Confidence 2234566777777788888899999999988764322 2 234456667777787888888888777654
Q ss_pred -----------------CcCCCCchhhHHHHHHHHhccCCc--------------------chHHHHHHHHHHhhhhcC-
Q 003409 318 -----------------SLISDQNRSIATLAITTLLKTGNE--------------------SSVDRLMKQITNFMSDIA- 359 (822)
Q Consensus 318 -----------------~lL~d~d~sIr~~aL~lL~~l~ne--------------------~Nv~~Iv~eL~~y~~~~~- 359 (822)
..+.|+ ..+|..++..|..++.. .-+..|+..|...+.+.+
T Consensus 441 ~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~ 519 (876)
T 1qgr_A 441 EAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG 519 (876)
T ss_dssp GGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS
T ss_pred hhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc
Confidence 233453 55676666665554422 234566666666554331
Q ss_pred --HHHHHHHHHHHHHHHHhCcc---------------------------------------------------------c
Q 003409 360 --DEFKIVVVEAIRSLCLKFPL---------------------------------------------------------K 380 (822)
Q Consensus 360 --~~~k~~~v~aI~~la~k~~~---------------------------------------------------------~ 380 (822)
...|..++.+++.++...+. .
T Consensus 520 ~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~ 599 (876)
T 1qgr_A 520 HQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD 599 (876)
T ss_dssp CSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred chhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhh
Confidence 23444455555544443321 1
Q ss_pred ----HHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHhCCc----hHHHHHHHHHHHhhcCCchhHHHhhheecCCCCC
Q 003409 381 ----YRSLMNFLSNILREEGG-FEYKKAIVDSIVILIRDIPD----AKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGP 451 (822)
Q Consensus 381 ----~~~~v~~l~~lL~~~g~-~~v~~~iv~~i~~iv~~~p~----~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~ 451 (822)
...++..+++++....+ ..+...++..+..++...++ ....++..|...+.+...++++..++|.+|..+.
T Consensus 600 ~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 679 (876)
T 1qgr_A 600 ALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCR 679 (876)
T ss_dssp HHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 12233333333433211 12455556666655553221 1234555666666665456666667777666432
Q ss_pred CCC-C----hHHHHHHHHhhccC--CCHHHHHHHHHHHHHHhhccc-cc---hHHHHHHHHHHhc
Q 003409 452 KTS-D----PSKYIRYIYNRVHL--ENATVRAAAVSTLAKFGAMVD-AL---KPRVFVLLRRCLY 505 (822)
Q Consensus 452 ~~~-~----~~~~i~~i~~~~~~--e~~~vr~~~ltal~K~~~~~~-~~---~~~i~~ll~~~~~ 505 (822)
... . ....+..+.+.+.. .+..+|..++.+++.++...+ ++ -+.+...+.....
T Consensus 680 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~ 744 (876)
T 1qgr_A 680 ALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQ 744 (876)
T ss_dssp HHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHT
T ss_pred HHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHh
Confidence 211 1 13344444444433 245688888888777765442 22 3455555555554
No 27
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.90 E-value=1.2e-06 Score=100.98 Aligned_cols=268 Identities=13% Similarity=0.088 Sum_probs=164.8
Q ss_pred hhhHHhhcCCCCHHHHHHHHHHh----cCCCch---hhHHH-HHHHHHHhhcC-CCHHHHHHHHHHHHhhcccChhHHH-
Q 003409 108 TSSLMKDMTSKTDMYRANAIRVL----CRITDG---TLLTQ-IERYLKQAIVD-KNPVVASAALVSGIHLLQTTPEIVK- 177 (822)
Q Consensus 108 iNsl~kDl~~~n~~vr~lALr~l----~~I~~~---~~~~~-l~~~v~~~l~d-~~p~VRk~A~la~~~l~~~~pe~v~- 177 (822)
+.-+.+.++|.|+..+--|.+.+ ++=+.| .+++. ++|.+.++|.+ .+|.|+..|+-|+..+...+++..+
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 44555666666665554333222 221222 23332 56667777754 4577777777777777666665433
Q ss_pred ----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHH---------HHHHHHHhcCCC--CCChhHHHHHHHHHHhhh
Q 003409 178 ----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLA---------VSKLVTSLTRGT--VRSPLAQCLLIRYTTQVI 242 (822)
Q Consensus 178 ----~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~---------i~~Li~~l~~~~--~~~~w~~v~llr~l~~~~ 242 (822)
..++.+..+|.+.++.|.-.|+.+|..|..+.+.. +..|+.-+.... ......+-.....+..+.
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 25566677777777777777777777776654321 222333332110 011111111222222221
Q ss_pred hcccCCCCC----chhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhH-----hhHHHHHHHHhcCCCchhHHHHHH
Q 003409 243 REAATTQTG----DRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNREL-----TPAITVLQLFLSSSKPVLRFAAVR 313 (822)
Q Consensus 243 ~~~~~d~~~----~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~-----~~a~~~L~~~l~s~~~n~ry~aL~ 313 (822)
... ++.. ...+++.|..+|++.++-|...|+.++.++...+.... ..++..|..++.++++.++..+++
T Consensus 219 ~~~--~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~ 296 (510)
T 3ul1_B 219 RNK--NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296 (510)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred hcc--cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHH
Confidence 111 1211 13466778888899999999999999999975443322 234567888899998888888777
Q ss_pred hhcc----------------------CcCCCCchhhHHHHHHHHhccC--CcchHHHH-----HHHHHHhhhhcCHHHHH
Q 003409 314 TLNK----------------------SLISDQNRSIATLAITTLLKTG--NESSVDRL-----MKQITNFMSDIADEFKI 364 (822)
Q Consensus 314 ~l~~----------------------~lL~d~d~sIr~~aL~lL~~l~--ne~Nv~~I-----v~eL~~y~~~~~~~~k~ 364 (822)
.+.. .++++++..|++.|...|..++ ++.+...+ +.-|...+.+.+.+.|.
T Consensus 297 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 376 (510)
T 3ul1_B 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 376 (510)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Confidence 7632 5678889999999999998876 34444443 35677778888899999
Q ss_pred HHHHHHHHHHHhC
Q 003409 365 VVVEAIRSLCLKF 377 (822)
Q Consensus 365 ~~v~aI~~la~k~ 377 (822)
+++.+|+.++..-
T Consensus 377 ~Aa~aL~Nl~~~~ 389 (510)
T 3ul1_B 377 EAAWAITNYTSGG 389 (510)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccC
Confidence 9999999998764
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.90 E-value=1.1e-06 Score=101.06 Aligned_cols=333 Identities=13% Similarity=0.095 Sum_probs=203.4
Q ss_pred hhhhHHhhcCCCCHHHHHHHHHHhcCCCchh-----hH--HHHHHHHHHhhcC-CCHHHHHHHHHHHHhhcccChhHHH-
Q 003409 107 VTSSLMKDMTSKTDMYRANAIRVLCRITDGT-----LL--TQIERYLKQAIVD-KNPVVASAALVSGIHLLQTTPEIVK- 177 (822)
Q Consensus 107 viNsl~kDl~~~n~~vr~lALr~l~~I~~~~-----~~--~~l~~~v~~~l~d-~~p~VRk~A~la~~~l~~~~pe~v~- 177 (822)
++..|.+=|.++++.+|..|+.+|+++...+ +. +...+.+.+.+.+ .++.+|+.|+.++.++... ++...
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~ 96 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLA 96 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHH
Confidence 4566667777899999999999998875422 11 2456666777754 5899999999999987653 43222
Q ss_pred ----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChH---------HHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhc
Q 003409 178 ----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL---------AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIRE 244 (822)
Q Consensus 178 ----~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~---------~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~ 244 (822)
..++.+.+++.+.++.++..|+..|..+...++. .+..|+.-+. ..++-.+....+.+..+...
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~---~~~~~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN---KTNVKFLAITTDCLQILAYG 173 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG---CCCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHh---cCCHHHHHHHHHHHHHHHhC
Confidence 2667788889888999999999999988765321 1233444443 22332222222333332111
Q ss_pred ccCCCCCch-----hhHHHHHHHhccCCh-hhHHHHHHHHhhccCCCh--H-hH-hhHHHHHHHHhcCCCchhHHHHHHh
Q 003409 245 AATTQTGDR-----PFYDFLESCLRHKAE-MVIFEAARAITELNGVTN--R-EL-TPAITVLQLFLSSSKPVLRFAAVRT 314 (822)
Q Consensus 245 ~~~d~~~~~-----~l~~~l~~~L~~~~~-aV~~ea~~~i~~l~~~~~--~-~~-~~a~~~L~~~l~s~~~n~ry~aL~~ 314 (822)
+++... ..++.|..+|++.++ .+...+++++..+...+. . +. ..++..|..++.++++.++..++..
T Consensus 174 ---~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~ 250 (529)
T 1jdh_A 174 ---NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 250 (529)
T ss_dssp ---CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHH
T ss_pred ---CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHH
Confidence 121111 234555566666544 455667777777754321 1 11 2456677777877777776665554
Q ss_pred hcc-------------------CcCCCCchhhHHHHHHHHhccCCc--chHHHHH-----HHHHHhhhhc--CHHHHHHH
Q 003409 315 LNK-------------------SLISDQNRSIATLAITTLLKTGNE--SSVDRLM-----KQITNFMSDI--ADEFKIVV 366 (822)
Q Consensus 315 l~~-------------------~lL~d~d~sIr~~aL~lL~~l~ne--~Nv~~Iv-----~eL~~y~~~~--~~~~k~~~ 366 (822)
+.. .++.++|..++..+...|..++.. ++...++ +.|...+.+. +.+.+..+
T Consensus 251 L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a 330 (529)
T 1jdh_A 251 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 330 (529)
T ss_dssp HHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHH
Confidence 422 456788899999999999988764 3555443 4555556542 36899999
Q ss_pred HHHHHHHHHhCcccHH--------HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHH-----HHHHHHHHHhhcC
Q 003409 367 VEAIRSLCLKFPLKYR--------SLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKE-----NGLLHLCEFIEDC 433 (822)
Q Consensus 367 v~aI~~la~k~~~~~~--------~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~-----~~l~~L~~~l~~~ 433 (822)
+.+++.++...|.... -.+..|.++|.......+..++...+..+... |+.+. .++..|++.+.+
T Consensus 331 ~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L~~ll~~- 408 (529)
T 1jdh_A 331 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVR- 408 (529)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHHHHHHHH-
Confidence 9999999876554321 23567788887644335777777788877753 43332 356777777765
Q ss_pred CchhHHHhhheecCC
Q 003409 434 EFTYLSTQILHFLGT 448 (822)
Q Consensus 434 ~~~~~~~~i~wiLGE 448 (822)
..++++..++|.++.
T Consensus 409 ~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 409 AHQDTQRRTSMGGTQ 423 (529)
T ss_dssp HHHHHC---------
T ss_pred HhHHHHHHHhcccCc
Confidence 346777888898876
No 29
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.89 E-value=1e-06 Score=112.36 Aligned_cols=430 Identities=12% Similarity=0.119 Sum_probs=231.3
Q ss_pred hhhhhhhcccCCccchhHHHHHHHHhCCCC-----cc-hhhhhhhHHhhcCCCCHHHHHHHHHHhcCCC---chhhHHHH
Q 003409 72 FFAVTKLFQSRDIGLRRMVYLMIKELSPSA-----DE-VIIVTSSLMKDMTSKTDMYRANAIRVLCRIT---DGTLLTQI 142 (822)
Q Consensus 72 f~~v~kl~~s~d~~lKrl~YL~l~~~~~~~-----~~-~lLviNsl~kDl~~~n~~vr~lALr~l~~I~---~~~~~~~l 142 (822)
+..+..-+.|+|...|++.--.+......+ +. .--++..+.+-+.|+|+.+|..|+++|+.+. .+...+.+
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i 87 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETI 87 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 334455578899999998876665554321 11 2234566777888999999999988887643 34567788
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhhcccChh----------HHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHhcCh-
Q 003409 143 ERYLKQAIVDKNPVVASAALVSGIHLLQTTPE----------IVKRWSNEVQEAVQS-RAALVQFHALALLHQIRQNDR- 210 (822)
Q Consensus 143 ~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe----------~v~~~~~~l~~ll~d-~~~~V~~~al~lL~~i~~~d~- 210 (822)
.+.+.+.+.|.++.||.+|+.++-.+....+. ..+.+++.+.+.+.+ .++.+...|+..|.++....+
T Consensus 88 ~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~ 167 (1230)
T 1u6g_C 88 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 167 (1230)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh
Confidence 88899999999999999999988777654332 355677777788874 678888889888888774311
Q ss_pred -------HHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcc------------------cCCCC---------------
Q 003409 211 -------LAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREA------------------ATTQT--------------- 250 (822)
Q Consensus 211 -------~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~------------------~~d~~--------------- 250 (822)
..+..+++.+. ...++.....++.+..+.... ..++.
T Consensus 168 ~l~~~~~~ll~~l~~~L~---~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~ 244 (1230)
T 1u6g_C 168 LLVNFHPSILTCLLPQLT---SPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQ 244 (1230)
T ss_dssp SCTTTHHHHHHHHGGGGG---CSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence 11222222222 234455444444444332110 00000
Q ss_pred -------CchhhHHHHHHHhccCChhhHHHHHHHHhhccCC-C---hHhHhhHHHHHHHHhcC-----------------
Q 003409 251 -------GDRPFYDFLESCLRHKAEMVIFEAARAITELNGV-T---NRELTPAITVLQLFLSS----------------- 302 (822)
Q Consensus 251 -------~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~-~---~~~~~~a~~~L~~~l~s----------------- 302 (822)
....+++.+...++..++.|.-.|+.++-.+... + ...+...+..+...+..
T Consensus 245 ~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~ 324 (1230)
T 1u6g_C 245 AGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMD 324 (1230)
T ss_dssp SSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----------------
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccccc
Confidence 1122333333333333333322222222221100 0 01111122222111110
Q ss_pred --------------------CCchhHHHHHHhhcc---------------------CcCCCCchhhHHHHHHHHhccCCc
Q 003409 303 --------------------SKPVLRFAAVRTLNK---------------------SLISDQNRSIATLAITTLLKTGNE 341 (822)
Q Consensus 303 --------------------~~~n~ry~aL~~l~~---------------------~lL~d~d~sIr~~aL~lL~~l~ne 341 (822)
....+|..|+..+.. ..+.|++..+|..++..+..++..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 404 (1230)
T 1u6g_C 325 ADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQ 404 (1230)
T ss_dssp --------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 001234444433321 234566666666666655433321
Q ss_pred ---------------------chHHHHHHH----HHHhhhhcCHHHHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHH
Q 003409 342 ---------------------SSVDRLMKQ----ITNFMSDIADEFKIVVVEAIRSLCLKFPL----KYRSLMNFLSNIL 392 (822)
Q Consensus 342 ---------------------~Nv~~Iv~e----L~~y~~~~~~~~k~~~v~aI~~la~k~~~----~~~~~v~~l~~lL 392 (822)
.-+...+.+ +...+.+.+...|..++..++.++...+. ....++..+++.|
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L 484 (1230)
T 1u6g_C 405 TRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSL 484 (1230)
T ss_dssp HCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHT
T ss_pred hccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHH
Confidence 111223333 33336666777888888899988887653 3456777777777
Q ss_pred hhcCC-cchHHHHHHHHHHHHHhC-Cch----HHHHHHHHHHHhhcCCchhHHHhhheecCCC----CC---C-CCCh--
Q 003409 393 REEGG-FEYKKAIVDSIVILIRDI-PDA----KENGLLHLCEFIEDCEFTYLSTQILHFLGTE----GP---K-TSDP-- 456 (822)
Q Consensus 393 ~~~g~-~~v~~~iv~~i~~iv~~~-p~~----~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy----~~---~-~~~~-- 456 (822)
.+... ..+..+++..+..++... |+. ...++..|...+.+.. ..++..+++.+|+. ++ . ...-
T Consensus 485 ~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~-~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 563 (1230)
T 1u6g_C 485 NDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPF-YKITSEALLVTQQLVKVIRPLDQPSSFDATP 563 (1230)
T ss_dssp TCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHHCCSSSCCCCCCHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHhcCcccccccchHH
Confidence 75432 246677777777777644 331 2235566666666643 23333333333322 11 1 1121
Q ss_pred --HHHHHHHHhhc--cCCCHHHHHHHHHHHHHHhhccc-cch---HHHHHHHHHHhc
Q 003409 457 --SKYIRYIYNRV--HLENATVRAAAVSTLAKFGAMVD-ALK---PRVFVLLRRCLY 505 (822)
Q Consensus 457 --~~~i~~i~~~~--~~e~~~vr~~~ltal~K~~~~~~-~~~---~~i~~ll~~~~~ 505 (822)
...+..+.+.+ ...++.+|..++.+++.++...+ .+. +.++.+|...+.
T Consensus 564 ~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~ 620 (1230)
T 1u6g_C 564 YIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLK 620 (1230)
T ss_dssp HHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhc
Confidence 23444455555 45678999999999988887653 222 556666555544
No 30
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.89 E-value=1.2e-07 Score=113.78 Aligned_cols=335 Identities=11% Similarity=0.068 Sum_probs=209.5
Q ss_pred hhhhhhhhcccCCccchhHHHHHHHHhCCCC---cchh-hhhhhHHhhcCCCCHHHHHHHHHHhcCCCc--------hhh
Q 003409 71 VFFAVTKLFQSRDIGLRRMVYLMIKELSPSA---DEVI-IVTSSLMKDMTSKTDMYRANAIRVLCRITD--------GTL 138 (822)
Q Consensus 71 lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~---~~~l-LviNsl~kDl~~~n~~vr~lALr~l~~I~~--------~~~ 138 (822)
....++++++|++..+++-.+-++...+... +.++ .-+.-|.+=+.+.++.+|-.|+-+||++.. +.+
T Consensus 291 ~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~ 370 (810)
T 3now_A 291 ILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPF 370 (810)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSS
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccch
Confidence 4466788999999999999998887766542 1111 123555565678889999999999999752 222
Q ss_pred ----HHHHHHHHHHhhcCC--CHHHHHHHHHHHHhhcccCh---hHHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003409 139 ----LTQIERYLKQAIVDK--NPVVASAALVSGIHLLQTTP---EIVK--RWSNEVQEAVQSRAALVQFHALALLHQIRQ 207 (822)
Q Consensus 139 ----~~~l~~~v~~~l~d~--~p~VRk~A~la~~~l~~~~p---e~v~--~~~~~l~~ll~d~~~~V~~~al~lL~~i~~ 207 (822)
++.+.+.+.++|.+. ++-+|+.|+-++..|....+ +++. .+++.+.+++.+.++.+++.|+..|..|..
T Consensus 371 ~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~ 450 (810)
T 3now_A 371 GDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCN 450 (810)
T ss_dssp TTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred hhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcC
Confidence 467888899999887 89999999999999865433 2232 478888899988899999999999999986
Q ss_pred cCh-H---------------------------H-------------HHHHHHHhcCCCCCChhHHHHHHHHHHhhhhccc
Q 003409 208 NDR-L---------------------------A-------------VSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAA 246 (822)
Q Consensus 208 ~d~-~---------------------------~-------------i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~ 246 (822)
.+. . . +..|+.-+. ..+|=.+-...+.+..+..
T Consensus 451 ~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~---s~s~~vqe~Aa~aL~NLA~--- 524 (810)
T 3now_A 451 AYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAK---TESHNSQELIARVLNAVCG--- 524 (810)
T ss_dssp CSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHT---CCCHHHHHHHHHHHHHHHT---
T ss_pred CchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHc---CCCHHHHHHHHHHHHHHcC---
Confidence 320 0 0 111222222 3456666666666665532
Q ss_pred CCCCCchh-----hHHHHHHHhccCChhhHHHHHHHHhhccC-CChHh------HhhHHHHHHHHhcCCCc-hhHHHHHH
Q 003409 247 TTQTGDRP-----FYDFLESCLRHKAEMVIFEAARAITELNG-VTNRE------LTPAITVLQLFLSSSKP-VLRFAAVR 313 (822)
Q Consensus 247 ~d~~~~~~-----l~~~l~~~L~~~~~aV~~ea~~~i~~l~~-~~~~~------~~~a~~~L~~~l~s~~~-n~ry~aL~ 313 (822)
+++.+.. .+..|..+|++.+..+...|+.++..+.. .++.. ...++.+|..+|.+... ..++.|+.
T Consensus 525 -d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~ 603 (810)
T 3now_A 525 -LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLM 603 (810)
T ss_dssp -SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHH
T ss_pred -CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHH
Confidence 2333332 24566777777777888888888877631 12222 12356677777765423 23455544
Q ss_pred hhcc----------------------CcCCCCchhhHHHHHHHHhccCCcch-HHH------HHHHHHHhhhhcCHHHHH
Q 003409 314 TLNK----------------------SLISDQNRSIATLAITTLLKTGNESS-VDR------LMKQITNFMSDIADEFKI 364 (822)
Q Consensus 314 ~l~~----------------------~lL~d~d~sIr~~aL~lL~~l~ne~N-v~~------Iv~eL~~y~~~~~~~~k~ 364 (822)
.|.. .++.+++..|++-|+.+|..++.... ... .++-|..++...+.+.+.
T Consensus 604 AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~ 683 (810)
T 3now_A 604 ALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETAT 683 (810)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHH
Confidence 4421 34456666777777777776654322 222 223444556665666777
Q ss_pred HHHHHHHHHHHhCcccHHHH------HHHHHHHHhhcCCcchHHHHHHHHHHHHH
Q 003409 365 VVVEAIRSLCLKFPLKYRSL------MNFLSNILREEGGFEYKKAIVDSIVILIR 413 (822)
Q Consensus 365 ~~v~aI~~la~k~~~~~~~~------v~~l~~lL~~~g~~~v~~~iv~~i~~iv~ 413 (822)
.+..+++.|+...+.....+ +..|.++|.. ++.+++..+...+.++..
T Consensus 684 ~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s-~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 684 ACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN-PSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC-CCHHHHHHHHHHHHHHHh
Confidence 77777777776444333322 2355555553 445555555555555554
No 31
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.88 E-value=8.8e-07 Score=105.15 Aligned_cols=333 Identities=13% Similarity=0.110 Sum_probs=198.3
Q ss_pred hhhhHHhhcCCCCHHHHHHHHHHhcCCCchh-----hH--HHHHHHHHHhhcC-CCHHHHHHHHHHHHhhcccChhHHH-
Q 003409 107 VTSSLMKDMTSKTDMYRANAIRVLCRITDGT-----LL--TQIERYLKQAIVD-KNPVVASAALVSGIHLLQTTPEIVK- 177 (822)
Q Consensus 107 viNsl~kDl~~~n~~vr~lALr~l~~I~~~~-----~~--~~l~~~v~~~l~d-~~p~VRk~A~la~~~l~~~~pe~v~- 177 (822)
++..|.+=|.++++.+|-.|+++|+++...+ +. +.+.+.+.+.|.+ .++.+|+.|+.++..+... ++...
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~ 93 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLA 93 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHH
Confidence 3455555566788888888888887764322 11 2455666666665 4788888888887766543 33221
Q ss_pred ----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChH---------HHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhc
Q 003409 178 ----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL---------AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIRE 244 (822)
Q Consensus 178 ----~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~---------~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~ 244 (822)
..++.+.+++.+.++.++..|+..|..+...+.. .+..|+.-+. ..++-.+....+.+..+...
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~---~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN---KTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG---CCCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHC---cCCHHHHHHHHHHHHHHHhc
Confidence 2566777788888888888888888887655321 1233444443 22332222223333332111
Q ss_pred ccCCCCCch-----hhHHHHHHHhccCC-hhhHHHHHHHHhhccCCCh---HhH-hhHHHHHHHHhcCCCchhHHHHHHh
Q 003409 245 AATTQTGDR-----PFYDFLESCLRHKA-EMVIFEAARAITELNGVTN---REL-TPAITVLQLFLSSSKPVLRFAAVRT 314 (822)
Q Consensus 245 ~~~d~~~~~-----~l~~~l~~~L~~~~-~aV~~ea~~~i~~l~~~~~---~~~-~~a~~~L~~~l~s~~~n~ry~aL~~ 314 (822)
+++... ..++.|..+|++.+ ..+...|++++..+...+. .++ ..++..|..++.++++.++..++..
T Consensus 171 ---~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~ 247 (644)
T 2z6h_A 171 ---NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 247 (644)
T ss_dssp ---CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHH
T ss_pred ---CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 111111 23456666776654 4567778888877764221 111 2356677777777777777666555
Q ss_pred hcc-------------------CcCCCCchhhHHHHHHHHhccCCc--chHHHH-----HHHHHHhhhhcC--HHHHHHH
Q 003409 315 LNK-------------------SLISDQNRSIATLAITTLLKTGNE--SSVDRL-----MKQITNFMSDIA--DEFKIVV 366 (822)
Q Consensus 315 l~~-------------------~lL~d~d~sIr~~aL~lL~~l~ne--~Nv~~I-----v~eL~~y~~~~~--~~~k~~~ 366 (822)
+.. .++.++|..++..|...|..++.. .|...+ ++.|..++.+.+ .+.+..+
T Consensus 248 L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a 327 (644)
T 2z6h_A 248 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 327 (644)
T ss_dssp HHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHH
Confidence 422 356788889999999999888764 444443 456666666533 6899999
Q ss_pred HHHHHHHHHhCcccH--------HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchH-----HHHHHHHHHHhhcC
Q 003409 367 VEAIRSLCLKFPLKY--------RSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAK-----ENGLLHLCEFIEDC 433 (822)
Q Consensus 367 v~aI~~la~k~~~~~--------~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~-----~~~l~~L~~~l~~~ 433 (822)
+.+++.|+...+... ...+..|.++|....+..+..++...+..+... ++.+ ..++..|++.+.+
T Consensus 328 ~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~-~~~~~~i~~~~~i~~Lv~lL~~- 405 (644)
T 2z6h_A 328 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVR- 405 (644)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHH-
T ss_pred HHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC-HHHHHHHHHcCCHHHHHHHHhc-
Confidence 999999987655321 135677888887654445777777788777653 3332 2356677777764
Q ss_pred CchhHHHhhheecCC
Q 003409 434 EFTYLSTQILHFLGT 448 (822)
Q Consensus 434 ~~~~~~~~i~wiLGE 448 (822)
...+++..++|.++.
T Consensus 406 ~~~~vr~~a~~al~n 420 (644)
T 2z6h_A 406 AHQDTQRRTSMGGTQ 420 (644)
T ss_dssp HHHHHTTC-------
T ss_pred cchhhhhHhhhcccc
Confidence 234566777887776
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.84 E-value=3.7e-07 Score=110.76 Aligned_cols=363 Identities=13% Similarity=0.111 Sum_probs=212.5
Q ss_pred hhhhhhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchh-----h--HHHHHHH
Q 003409 73 FAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGT-----L--LTQIERY 145 (822)
Q Consensus 73 ~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~-----~--~~~l~~~ 145 (822)
..+++.+++++...|+-.--.+ .+.......-=++..|.+=|.++++.+|-.|+.+|++|...+ + .+.+++.
T Consensus 118 ~~lv~~L~~~~~~~r~~a~~~l-~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~ 196 (780)
T 2z6g_A 118 PTNVQRLAEPSQMLKHAVVNLI-NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 196 (780)
T ss_dssp --------CCSCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcCccHHHHHHHHHHH-HhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH
Confidence 3455566777665554321112 111111111224566666667899999999999999886422 1 1245666
Q ss_pred HHHhhcC-CCHHHHHHHHHHHHhhcccChhH---H-H-HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChH--------
Q 003409 146 LKQAIVD-KNPVVASAALVSGIHLLQTTPEI---V-K-RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL-------- 211 (822)
Q Consensus 146 v~~~l~d-~~p~VRk~A~la~~~l~~~~pe~---v-~-~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~-------- 211 (822)
+.+.|.+ .++.+|+.|+.++.++... ++- + + ..++.+.+++.+.++.++..|+..|..++..++.
T Consensus 197 Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~ 275 (780)
T 2z6g_A 197 IVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLA 275 (780)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHc
Confidence 6666654 5899999999999987653 332 2 1 3677888899998999999999999999865321
Q ss_pred -HHHHHHHHhcCCCCCChhHHH---HHHHHHHhhhhcccCCCCC-----chhhHHHHHHHhccCChh-hHHHHHHHHhhc
Q 003409 212 -AVSKLVTSLTRGTVRSPLAQC---LLIRYTTQVIREAATTQTG-----DRPFYDFLESCLRHKAEM-VIFEAARAITEL 281 (822)
Q Consensus 212 -~i~~Li~~l~~~~~~~~w~~v---~llr~l~~~~~~~~~d~~~-----~~~l~~~l~~~L~~~~~a-V~~ea~~~i~~l 281 (822)
++..|+.-+.. .++-.+- ..++.++. . +++. ....++.|..+|++.++. +...|+.++..+
T Consensus 276 g~v~~Lv~lL~~---~~~~v~~~a~~aL~~La~---~---~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 276 GGLQKMVALLNK---TNVKFLAITTDCLQILAY---G---NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346 (780)
T ss_dssp THHHHHHHGGGC---CCHHHHHHHHHHHHHHHT---T---CHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhc---CCHHHHHHHHHHHHHHhc---C---ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 23334444431 2221122 23333321 1 1111 112356666677776554 444556666666
Q ss_pred cCCCh---HhH-hhHHHHHHHHhcCCCchhHHHHHHhhcc-------------------CcCCCCchhhHHHHHHHHhcc
Q 003409 282 NGVTN---REL-TPAITVLQLFLSSSKPVLRFAAVRTLNK-------------------SLISDQNRSIATLAITTLLKT 338 (822)
Q Consensus 282 ~~~~~---~~~-~~a~~~L~~~l~s~~~n~ry~aL~~l~~-------------------~lL~d~d~sIr~~aL~lL~~l 338 (822)
...+. .+. ..++..|..++.+.++.++..++..+.. .+|.++|..++..|...|..+
T Consensus 347 s~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L 426 (780)
T 2z6g_A 347 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 426 (780)
T ss_dssp HTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 43221 111 2356677777777776666555544321 456888999999999999888
Q ss_pred CCc--chHHHH-----HHHHHHhhhhc--CHHHHHHHHHHHHHHHHhCcccH--H------HHHHHHHHHHhhcCCcchH
Q 003409 339 GNE--SSVDRL-----MKQITNFMSDI--ADEFKIVVVEAIRSLCLKFPLKY--R------SLMNFLSNILREEGGFEYK 401 (822)
Q Consensus 339 ~ne--~Nv~~I-----v~eL~~y~~~~--~~~~k~~~v~aI~~la~k~~~~~--~------~~v~~l~~lL~~~g~~~v~ 401 (822)
+.. .+...+ +..|...+.+. ..+.+..++.+++.|+...+... . ..+..|+++|.......+.
T Consensus 427 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~ 506 (780)
T 2z6g_A 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 506 (780)
T ss_dssp TSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHH
Confidence 764 344433 35556666542 24899999999999987655421 1 2466788888765443577
Q ss_pred HHHHHHHHHHHHhCCchH-----HHHHHHHHHHhhcCCchhHHHhhheecCC
Q 003409 402 KAIVDSIVILIRDIPDAK-----ENGLLHLCEFIEDCEFTYLSTQILHFLGT 448 (822)
Q Consensus 402 ~~iv~~i~~iv~~~p~~~-----~~~l~~L~~~l~~~~~~~~~~~i~wiLGE 448 (822)
.++...+..+.. .++.+ ..++..|++.+.+. .++.++.++|.+|.
T Consensus 507 ~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~aa~al~n 556 (780)
T 2z6g_A 507 KATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRA-HQDTQRRTSMGGTQ 556 (780)
T ss_dssp HHHHHHHHHHHS-SHHHHHHHHHTTHHHHHHHHHHHH-HHHHHHTTC-----
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHCCCHHHHHHHHHhc-chhHHHHHhhcccc
Confidence 777888888875 33333 23567777777652 34566777887776
No 33
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.82 E-value=1.2e-06 Score=101.36 Aligned_cols=270 Identities=13% Similarity=0.084 Sum_probs=179.1
Q ss_pred hhhhhHHhhcCCCCHHHHHHHHHHhcCC----Cch---hhHHH-HHHHHHHhhc-CCCHHHHHHHHHHHHhhcccChhHH
Q 003409 106 IVTSSLMKDMTSKTDMYRANAIRVLCRI----TDG---TLLTQ-IERYLKQAIV-DKNPVVASAALVSGIHLLQTTPEIV 176 (822)
Q Consensus 106 LviNsl~kDl~~~n~~vr~lALr~l~~I----~~~---~~~~~-l~~~v~~~l~-d~~p~VRk~A~la~~~l~~~~pe~v 176 (822)
..+..+.+.+.|+|+..+-.|++.+.++ ..| .+++. ++|.+.++|. +.+|.++..|+-|+..+....++..
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3456778888888887776666655432 222 23332 6777888885 4668999999999999987777643
Q ss_pred H-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHH---------HHHHHHHhcCCC--CCChhHHHHHHHHHHh
Q 003409 177 K-----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLA---------VSKLVTSLTRGT--VRSPLAQCLLIRYTTQ 240 (822)
Q Consensus 177 ~-----~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~---------i~~Li~~l~~~~--~~~~w~~v~llr~l~~ 240 (822)
+ ..++.+..++.+.++.|..+|+.+|..|..+++.. +..|+..+.... ......+-.....+..
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 3 26778888999999999999999999998765432 223343332110 1111111122222222
Q ss_pred hhhcccCCCCC----chhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhH-----hhHHHHHHHHhcCCCchhHHHH
Q 003409 241 VIREAATTQTG----DRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNREL-----TPAITVLQLFLSSSKPVLRFAA 311 (822)
Q Consensus 241 ~~~~~~~d~~~----~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~-----~~a~~~L~~~l~s~~~n~ry~a 311 (822)
+.... ++.. ...+++.|..+|++.++.|...|+.++.++...+.... ..++..|..++.++++.++..+
T Consensus 236 l~~~~--~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a 313 (529)
T 3tpo_A 236 LCRNK--NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 313 (529)
T ss_dssp HHCCC--TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HHhcc--cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHH
Confidence 22111 1211 13467788889999999999999999999875444322 2355678888888888888777
Q ss_pred HHhhcc----------------------CcCCCCchhhHHHHHHHHhccC--CcchHHHH-----HHHHHHhhhhcCHHH
Q 003409 312 VRTLNK----------------------SLISDQNRSIATLAITTLLKTG--NESSVDRL-----MKQITNFMSDIADEF 362 (822)
Q Consensus 312 L~~l~~----------------------~lL~d~d~sIr~~aL~lL~~l~--ne~Nv~~I-----v~eL~~y~~~~~~~~ 362 (822)
++.+.. .++.+++..|++.|...|..++ ++.....+ +.-|...+.+.+.+.
T Consensus 314 ~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 393 (529)
T 3tpo_A 314 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 393 (529)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHH
Confidence 776532 4567888889888888887765 34444433 345666777778888
Q ss_pred HHHHHHHHHHHHHhC
Q 003409 363 KIVVVEAIRSLCLKF 377 (822)
Q Consensus 363 k~~~v~aI~~la~k~ 377 (822)
+.+++.+|+.++..-
T Consensus 394 ~~~A~~aL~nl~~~~ 408 (529)
T 3tpo_A 394 QKAAAWAITNYTSGG 408 (529)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCC
Confidence 889999998888653
No 34
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.73 E-value=5e-07 Score=95.24 Aligned_cols=249 Identities=13% Similarity=0.082 Sum_probs=169.5
Q ss_pred hhhhhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCc-hhhHHHHHHHHH-Hhhc
Q 003409 74 AVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITD-GTLLTQIERYLK-QAIV 151 (822)
Q Consensus 74 ~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~-~~~~~~l~~~v~-~~l~ 151 (822)
.+++.+.++|...|+-.--.+..+.. + -++..+.+-+.|+++.+|..|+++|+.++. +...+.+.+.+. .++.
T Consensus 27 ~L~~~L~~~~~~vr~~A~~~L~~~~~--~---~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~ 101 (280)
T 1oyz_A 27 ELFRLLDDHNSLKRISSARVLQLRGG--Q---DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN 101 (280)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCC--H---HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHccCC--c---hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc
Confidence 34556778888888877777766552 2 245677788899999999999999999984 455666666666 4678
Q ss_pred CCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHH
Q 003409 152 DKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQ 231 (822)
Q Consensus 152 d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~ 231 (822)
|.++.||..|+.++.++....|......++.+..++.|.++.|...|+..|..+... .++..|+..+. ..+++..
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~--~~~~~L~~~l~---d~~~~vr 176 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK--ATIPLLINLLK---DPNGDVR 176 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----CCHHHHHHHHT---CSSHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHc---CCCHHHH
Confidence 999999999999999987665555556777788889999999999888877765442 34555665554 4566666
Q ss_pred HHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHH
Q 003409 232 CLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAA 311 (822)
Q Consensus 232 v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~a 311 (822)
...++.+..+.. ......+.|...|++.++.|..+|+.++..+.+ + .++..|...+.+
T Consensus 177 ~~a~~aL~~~~~-------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--~----~~~~~L~~~l~d--------- 234 (280)
T 1oyz_A 177 NWAAFAININKY-------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--K----RVLSVLCDELKK--------- 234 (280)
T ss_dssp HHHHHHHHHHTC-------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--G----GGHHHHHHHHTS---------
T ss_pred HHHHHHHHhhcc-------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--H----hhHHHHHHHhcC---------
Confidence 666666665411 124567888888888899999999999988852 2 234444444432
Q ss_pred HHhhccCcCCCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhh-cCHHHHHHHHHHHH
Q 003409 312 VRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSD-IADEFKIVVVEAIR 371 (822)
Q Consensus 312 L~~l~~~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~-~~~~~k~~~v~aI~ 371 (822)
++ +|..++..|-.++++.- +..|..++.+ .+.+++..++.++.
T Consensus 235 -----------~~--vr~~a~~aL~~i~~~~~----~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 235 -----------NT--VYDDIIEAAGELGDKTL----LPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp -----------SS--CCHHHHHHHHHHCCGGG----HHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred -----------cc--HHHHHHHHHHhcCchhh----hHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 22 55556666666666433 3333333332 34567777766653
No 35
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.71 E-value=4.1e-07 Score=91.58 Aligned_cols=179 Identities=20% Similarity=0.169 Sum_probs=130.6
Q ss_pred hhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHh
Q 003409 108 TSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAV 187 (822)
Q Consensus 108 iNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll 187 (822)
+..|.+-|.|+++.+|..|++.|+.++.++..+ .+.+++.|.++.||..|+.++.++- .++.+ +.+..++
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~----~L~~~l~~~~~~vr~~a~~aL~~~~--~~~~~----~~L~~~l 90 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVE----PLIKALKDEDAWVRRAAADALGQIG--DERAV----EPLIKAL 90 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHH----HHHHHTTCSCHHHHHHHHHHHHHHC--CGGGH----HHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHH----HHHHHHcCCCHHHHHHHHHHHHhhC--CHHHH----HHHHHHH
Confidence 466777888999999999999999998866554 4556778899999999999988874 34333 4455677
Q ss_pred cCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCC
Q 003409 188 QSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKA 267 (822)
Q Consensus 188 ~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~ 267 (822)
.|.++.|...|+..|..+.. +.++..|+..+. ..++......++.+..+ . ++ ..++.|..++++.+
T Consensus 91 ~~~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~--~---~~----~~~~~L~~~l~d~~ 156 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQIGD--ERAVEPLIKALK---DEDWFVRIAAAFALGEI--G---DE----RAVEPLIKALKDED 156 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCC--GGGHHHHHHHTT---CSSHHHHHHHHHHHHHH--C---CG----GGHHHHHHHTTCSS
T ss_pred cCCCHHHHHHHHHHHHHhCc--HHHHHHHHHHHh---CCCHHHHHHHHHHHHHc--C---CH----HHHHHHHHHHcCCC
Confidence 88889998888888877654 355666666554 56777777777777765 1 22 34677777888888
Q ss_pred hhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhc
Q 003409 268 EMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLN 316 (822)
Q Consensus 268 ~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~ 316 (822)
+.|..+|+.++..+.. ..+...|..++.++++.+|..|++.|.
T Consensus 157 ~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 157 GWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLE 199 (211)
T ss_dssp HHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8899999999888853 234556666666677777777766654
No 36
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.70 E-value=3.6e-06 Score=102.92 Aligned_cols=388 Identities=12% Similarity=0.067 Sum_probs=221.7
Q ss_pred hhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcC--CCHHHHHHHHHHHHhhcc----------------cChh
Q 003409 113 KDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVD--KNPVVASAALVSGIHLLQ----------------TTPE 174 (822)
Q Consensus 113 kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d--~~p~VRk~A~la~~~l~~----------------~~pe 174 (822)
..+.++++.+|-.|...|.++... -.+.+...+.+.+.+ .++.||..|++.+-+... ..++
T Consensus 8 ~~~~s~d~~~r~~A~~~L~~~~~~-~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~ 86 (876)
T 1qgr_A 8 EKTVSPDRLELEAAQKFLERAAVE-NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDAN 86 (876)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhc-ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHH
Confidence 345677778887777777664332 123344445555555 457888888887665432 1222
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcC------hHHHHHHHHHhcCCCCC--ChhHHHHHHHHHHhhhhcc-
Q 003409 175 IVKRWSNEVQEAVQSRAALVQFHALALLHQIRQND------RLAVSKLVTSLTRGTVR--SPLAQCLLIRYTTQVIREA- 245 (822)
Q Consensus 175 ~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d------~~~i~~Li~~l~~~~~~--~~w~~v~llr~l~~~~~~~- 245 (822)
......+.+.+.+.+.++.+ ..+...+..+...+ +..+..|+..+. .. ++-..-..++.+..++..-
T Consensus 87 ~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~---~~~~~~~~r~~al~~l~~l~~~~~ 162 (876)
T 1qgr_A 87 ARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVT---NPNSTEHMKESTLEAIGYICQDID 162 (876)
T ss_dssp HHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH---CTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHhcC
Confidence 22223334555566655555 33333444443321 122333333333 22 3333333444444332210
Q ss_pred -cCCCCCchhhHHHHHHHhccC--ChhhHHHHHHHHhhccCCCh------HhHhhHHHHHHHHhcCCCchhHHHHHHhhc
Q 003409 246 -ATTQTGDRPFYDFLESCLRHK--AEMVIFEAARAITELNGVTN------RELTPAITVLQLFLSSSKPVLRFAAVRTLN 316 (822)
Q Consensus 246 -~~d~~~~~~l~~~l~~~L~~~--~~aV~~ea~~~i~~l~~~~~------~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~ 316 (822)
..-......+++.+...+++. +..|...|++++..+-..-. ......+..+..++.+.+..+|-.+++.+.
T Consensus 163 ~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~ 242 (876)
T 1qgr_A 163 PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLV 242 (876)
T ss_dssp HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 000112345566666777765 56788888888866431111 111224555556666777778877766654
Q ss_pred c----------------------CcCCCCchhhHHHHHHHHhccCCcc---------------------------hHHHH
Q 003409 317 K----------------------SLISDQNRSIATLAITTLLKTGNES---------------------------SVDRL 347 (822)
Q Consensus 317 ~----------------------~lL~d~d~sIr~~aL~lL~~l~ne~---------------------------Nv~~I 347 (822)
. .++.|.+..+|..+++.+..++... .+..+
T Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (876)
T 1qgr_A 243 KIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYL 322 (876)
T ss_dssp HHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHH
Confidence 3 1235778889999998887776431 12455
Q ss_pred HHHHHHhhhh-------cCHHHHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCC-ch
Q 003409 348 MKQITNFMSD-------IADEFKIVVVEAIRSLCLKFPLK-YRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIP-DA 418 (822)
Q Consensus 348 v~eL~~y~~~-------~~~~~k~~~v~aI~~la~k~~~~-~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p-~~ 418 (822)
+..+...+.. .+...|..+...++.++..++.. ...++.++...+.+ .+..++..++..+..+....+ +.
T Consensus 323 l~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~-~~~~~r~~a~~~l~~i~~~~~~~~ 401 (876)
T 1qgr_A 323 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQ 401 (876)
T ss_dssp HHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred hHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccC-CChHHHHHHHHHHHHHHcCCCHHH
Confidence 5555555542 23457889999999999887742 34566666666654 345577777878877765443 31
Q ss_pred ----HHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCC-------CChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhh
Q 003409 419 ----KENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKT-------SDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGA 487 (822)
Q Consensus 419 ----~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~-------~~~~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~ 487 (822)
...++..+...+.|. .+.++..++|.+|.++... +.-...+..+.+.+.. ++.||..+..++..++.
T Consensus 402 ~~~~~~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 402 LKPLVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Confidence 234566666666653 4678888999999887643 2234555666665443 58899988888888775
Q ss_pred ccc------------------cchHHHHHHHHHHhcCCC
Q 003409 488 MVD------------------ALKPRVFVLLRRCLYDGD 508 (822)
Q Consensus 488 ~~~------------------~~~~~i~~ll~~~~~d~d 508 (822)
.++ ..-+.++..|..++.+.+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~ 518 (876)
T 1qgr_A 480 AAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPD 518 (876)
T ss_dssp HHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS
T ss_pred HhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcC
Confidence 421 123456666666666553
No 37
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.65 E-value=1.2e-06 Score=87.47 Aligned_cols=180 Identities=19% Similarity=0.157 Sum_probs=131.6
Q ss_pred hhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q 003409 107 VTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEA 186 (822)
Q Consensus 107 viNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~l 186 (822)
....+.+.|.|+|+.+|..|++.|+.++.++.+ +.+.+++.|.++.||..|+.++.++- .|+. ++.+..+
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~----~~L~~~l~~~~~~vr~~a~~~L~~~~--~~~~----~~~L~~~ 84 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAV----EPLIKALKDEDAWVRRAAADALGQIG--DERA----VEPLIKA 84 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGH----HHHHHHTTCSSHHHHHHHHHHHHHHC--CGGG----HHHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCChhHH----HHHHHHHcCCCHHHHHHHHHHHHhhC--CHHH----HHHHHHH
Confidence 446777888999999999999999998886554 44556677899999999999888763 3433 3444557
Q ss_pred hcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccC
Q 003409 187 VQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHK 266 (822)
Q Consensus 187 l~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~ 266 (822)
+.|.++.|...|+..|..+.. +.++..|+..+. ..++......++.+..+ . + ...++.|..++++.
T Consensus 85 l~d~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~--~---~----~~~~~~L~~~l~d~ 150 (201)
T 3ltj_A 85 LKDEDGWVRQSAAVALGQIGD--ERAVEPLIKALK---DEDWFVRIAAAFALGEI--G---D----ERAVEPLIKALKDE 150 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHCC--GGGHHHHHHHTT---CSSHHHHHHHHHHHHHH--T---C----GGGHHHHHHHTTCS
T ss_pred HcCCCHHHHHHHHHHHHHhCc--HHHHHHHHHHHc---CCCHHHHHHHHHHHHHh--C---C----HHHHHHHHHHHcCC
Confidence 778888888888888877654 345666666554 45677777777777765 1 2 23567788888888
Q ss_pred ChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhc
Q 003409 267 AEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLN 316 (822)
Q Consensus 267 ~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~ 316 (822)
++.|..+|+.++..+.. + .+...|..++.++++.+|..|.+.|.
T Consensus 151 ~~~vr~~A~~aL~~~~~--~----~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG--E----RVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp SHHHHHHHHHHHHHHCS--H----HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc--h----hHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88899999999988852 2 35567777777777888888777664
No 38
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.63 E-value=1.8e-05 Score=94.97 Aligned_cols=335 Identities=11% Similarity=0.051 Sum_probs=222.4
Q ss_pred hhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHH-----HHHHHHHHhhcCCCHHHHHHHHHHHHhhccc----Ch-----
Q 003409 108 TSSLMKDMTSKTDMYRANAIRVLCRITDGTLLT-----QIERYLKQAIVDKNPVVASAALVSGIHLLQT----TP----- 173 (822)
Q Consensus 108 iNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~-----~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~----~p----- 173 (822)
+..|.+=++|+++.++-.|+.+++++.+..-.. .-.+.+..++.+.++.+|..|+.++.|+-.. .+
T Consensus 292 v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~ 371 (810)
T 3now_A 292 LQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFG 371 (810)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSST
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchh
Confidence 456666778899999988888888766543222 2237888889888999999999999998521 11
Q ss_pred -hHHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHhcC---------hHHHHHHHHHhcCCCCCChhHHHHHHHHHHhh
Q 003409 174 -EIVKRWSNEVQEAVQSR--AALVQFHALALLHQIRQND---------RLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQV 241 (822)
Q Consensus 174 -e~v~~~~~~l~~ll~d~--~~~V~~~al~lL~~i~~~d---------~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~ 241 (822)
.-++..++.+..+|.+. ++.+.-+|+..|..+.... ..++..|+.-+.. ..+-.+-..++.+..+
T Consensus 372 ~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s---~d~~i~~~al~~L~NL 448 (810)
T 3now_A 372 DGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARG---GNQSCLYGVVTTFVNL 448 (810)
T ss_dssp TTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHT---TCGGGHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCC---CChHHHHHHHHHHHHH
Confidence 22556778888888776 7889999998888876442 1234445544442 2344555566666654
Q ss_pred hhcccCCCC----------------------------Cc---h-----hhHHHHHHHhccCChhhHHHHHHHHhhccCCC
Q 003409 242 IREAATTQT----------------------------GD---R-----PFYDFLESCLRHKAEMVIFEAARAITELNGVT 285 (822)
Q Consensus 242 ~~~~~~d~~----------------------------~~---~-----~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~ 285 (822)
.... |++ .. + -.+..|..+|++.++.|.-+|++++.++.. .
T Consensus 449 t~~~--d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d 525 (810)
T 3now_A 449 CNAY--EKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-L 525 (810)
T ss_dssp TTCS--CCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-S
T ss_pred cCCc--hhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-C
Confidence 3221 100 00 0 135677788899999999999999999964 3
Q ss_pred hHhH-----hhHHHHHHHHhcCCCchhHHHHHHhhcc------------------------CcCCCC-chhhHHHHHHHH
Q 003409 286 NREL-----TPAITVLQLFLSSSKPVLRFAAVRTLNK------------------------SLISDQ-NRSIATLAITTL 335 (822)
Q Consensus 286 ~~~~-----~~a~~~L~~~l~s~~~n~ry~aL~~l~~------------------------~lL~d~-d~sIr~~aL~lL 335 (822)
...+ ..++.+|..+|.+.++..|-.|..+|.+ .+|..+ +...+..|+..|
T Consensus 526 ~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL 605 (810)
T 3now_A 526 KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMAL 605 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 3332 2356778888887777776665555432 334422 333445677777
Q ss_pred hccCC--cchHHHHH-----HHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHH------HHHHHHHHHHhhcCCcchHH
Q 003409 336 LKTGN--ESSVDRLM-----KQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYR------SLMNFLSNILREEGGFEYKK 402 (822)
Q Consensus 336 ~~l~n--e~Nv~~Iv-----~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~------~~v~~l~~lL~~~g~~~v~~ 402 (822)
..++. +++...|+ ..|..++.+-+...++.+...|+.++.. ++... -.+..|+.++.. .+..++.
T Consensus 606 ~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s-~d~~vq~ 683 (810)
T 3now_A 606 TNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCED-EDEETAT 683 (810)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGC-SSHHHHH
T ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcC-CCHHHHH
Confidence 77765 45666665 4677788777888999999999999852 22222 245567777775 4566888
Q ss_pred HHHHHHHHHHHhCCchHH------HHHHHHHHHhhcCCchhHHHhhheecCCCCC
Q 003409 403 AIVDSIVILIRDIPDAKE------NGLLHLCEFIEDCEFTYLSTQILHFLGTEGP 451 (822)
Q Consensus 403 ~iv~~i~~iv~~~p~~~~------~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~ 451 (822)
++.-.+..+...+|+... ..+..|++++.+ ...+++..++|.++....
T Consensus 684 ~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s-~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 684 ACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN-PSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC-CCHHHHHHHHHHHHHHHh
Confidence 888888888775554433 355577777764 456788888898877543
No 39
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.63 E-value=5.5e-06 Score=95.12 Aligned_cols=313 Identities=12% Similarity=0.089 Sum_probs=204.6
Q ss_pred CchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhH---H--HHHHHHHHHHhcC-CChhHHHHHHHHHHHHHh
Q 003409 134 TDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEI---V--KRWSNEVQEAVQS-RAALVQFHALALLHQIRQ 207 (822)
Q Consensus 134 ~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~---v--~~~~~~l~~ll~d-~~~~V~~~al~lL~~i~~ 207 (822)
+++++....++.+.+++.+.++.||..|+.++.++....+.. + ...++.+..++.+ .++.++.+|...|..+..
T Consensus 10 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~ 89 (529)
T 1jdh_A 10 DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH 89 (529)
T ss_dssp -------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred chhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 445566667888889999999999999999999987644321 2 1356666666654 478888899988888765
Q ss_pred cCh--H------HHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCc-----hhhHHHHHHHhccCChhhHHHH
Q 003409 208 NDR--L------AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGD-----RPFYDFLESCLRHKAEMVIFEA 274 (822)
Q Consensus 208 ~d~--~------~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~-----~~l~~~l~~~L~~~~~aV~~ea 274 (822)
++. . .+..|+.-+. ..++-.+...++.+..+... ++... ...++.|..+|++.+..+...+
T Consensus 90 ~~~~~~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~ 163 (529)
T 1jdh_A 90 HREGLLAIFKSGGIPALVKMLG---SPVDSVLFYAITTLHNLLLH---QEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 163 (529)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHH---CTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHH
T ss_pred CchhHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhcC---CcchHHHHHHcCCHHHHHHHHhcCCHHHHHHH
Confidence 421 1 1233444443 34466666666666655333 22222 2346778888888887787777
Q ss_pred HHHHhhccCCChHhH-----hhHHHHHHHHhcCCCch-hHHHHHHh---hcc------------------CcCCCCchhh
Q 003409 275 ARAITELNGVTNREL-----TPAITVLQLFLSSSKPV-LRFAAVRT---LNK------------------SLISDQNRSI 327 (822)
Q Consensus 275 ~~~i~~l~~~~~~~~-----~~a~~~L~~~l~s~~~n-~ry~aL~~---l~~------------------~lL~d~d~sI 327 (822)
+.++..+....+... ..++..|..++.++++. .++.+... +.. .++.+++..+
T Consensus 164 ~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~ 243 (529)
T 1jdh_A 164 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL 243 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHH
Confidence 777776643222211 23455666666654443 34443332 211 6778888999
Q ss_pred HHHHHHHHhccCCcc----hHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHH-----HHHHHHHHHhhcCC-
Q 003409 328 ATLAITTLLKTGNES----SVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRS-----LMNFLSNILREEGG- 397 (822)
Q Consensus 328 r~~aL~lL~~l~ne~----Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~-----~v~~l~~lL~~~g~- 397 (822)
++.++..|..++... .+..++..|...+.+.+.+.+..++.+++.|+...+..... .+..|+++|...++
T Consensus 244 ~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~ 323 (529)
T 1jdh_A 244 VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 323 (529)
T ss_dssp HHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCH
Confidence 999999998887532 34567888888888889999999999999998764433322 46678888876432
Q ss_pred cchHHHHHHHHHHHHHhCCch---HH-----HHHHHHHHHhhcCCchhHHHhhheecCCCCCC
Q 003409 398 FEYKKAIVDSIVILIRDIPDA---KE-----NGLLHLCEFIEDCEFTYLSTQILHFLGTEGPK 452 (822)
Q Consensus 398 ~~v~~~iv~~i~~iv~~~p~~---~~-----~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~ 452 (822)
..+...++..+..+....|+. +. .++..|.+.+.+...+.++..++|.++..+..
T Consensus 324 ~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 457777888888887766653 22 35677778887765567888889999887653
No 40
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.62 E-value=1.7e-05 Score=88.91 Aligned_cols=353 Identities=13% Similarity=0.087 Sum_probs=197.4
Q ss_pred hHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcC--CCHHHHHHHHHHHHhhcccC---------------
Q 003409 110 SLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVD--KNPVVASAALVSGIHLLQTT--------------- 172 (822)
Q Consensus 110 sl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d--~~p~VRk~A~la~~~l~~~~--------------- 172 (822)
.+...+.++++.+|-.|-..|..+...+ .+.....+...+.+ .++.||..|+..+-++....
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~-~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l 83 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVEN-LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcC
Confidence 4555688999999999999888765411 12233333444444 37899999999988775432
Q ss_pred h-hHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcC------hHHHHHHHHHhcCCCCC--ChhHHHHHHHHHHhhhh
Q 003409 173 P-EIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQND------RLAVSKLVTSLTRGTVR--SPLAQCLLIRYTTQVIR 243 (822)
Q Consensus 173 p-e~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d------~~~i~~Li~~l~~~~~~--~~w~~v~llr~l~~~~~ 243 (822)
| +......+.+.+.+.+.++.+ ..+...+..|...+ +..+..|+..+. .. ++-..-..++.+..+..
T Consensus 84 ~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~---~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 84 DANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVT---NPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp CHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH---CTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHH
Confidence 2 222223344455566655555 43333444443321 122333444443 12 33333344555555433
Q ss_pred cccCCCC----CchhhHHHHHHHhccC--ChhhHHHHHHHHhhccCCChHh------HhhHHHHHHHHhcCCCchhHHHH
Q 003409 244 EAATTQT----GDRPFYDFLESCLRHK--AEMVIFEAARAITELNGVTNRE------LTPAITVLQLFLSSSKPVLRFAA 311 (822)
Q Consensus 244 ~~~~d~~----~~~~l~~~l~~~L~~~--~~aV~~ea~~~i~~l~~~~~~~------~~~a~~~L~~~l~s~~~n~ry~a 311 (822)
.- .+. ....+++.+..+|++. +..|..+|++++..+-..-... .......|..+
T Consensus 160 ~~--~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~------------ 225 (462)
T 1ibr_B 160 DI--DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA------------ 225 (462)
T ss_dssp HS--CGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHH------------
T ss_pred hC--CchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh------------
Confidence 31 121 1234556666677666 5678888888876642111100 01112222223
Q ss_pred HHhhccCcCCCCchhhHHHHHHHHhccCCc------chHH-HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhC-------
Q 003409 312 VRTLNKSLISDQNRSIATLAITTLLKTGNE------SSVD-RLMKQITNFMSDIADEFKIVVVEAIRSLCLKF------- 377 (822)
Q Consensus 312 L~~l~~~lL~d~d~sIr~~aL~lL~~l~ne------~Nv~-~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~------- 377 (822)
+.++|..+|+.++..|..++.. ..+. .++.-+...+.+.++++|..++..+..++..-
T Consensus 226 --------~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~ 297 (462)
T 1ibr_B 226 --------TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA 297 (462)
T ss_dssp --------TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555555443311 1222 44444444455667788888888777777541
Q ss_pred ------------cc------cHHHHHHHHHHHHhhc------CCcchHHHHHHHHHHHHHhCCc-hHHHHHHHHHHHhhc
Q 003409 378 ------------PL------KYRSLMNFLSNILREE------GGFEYKKAIVDSIVILIRDIPD-AKENGLLHLCEFIED 432 (822)
Q Consensus 378 ------------~~------~~~~~v~~l~~lL~~~------g~~~v~~~iv~~i~~iv~~~p~-~~~~~l~~L~~~l~~ 432 (822)
+. ....++..+++.|... .+..+...+...+..+....++ ....++..+.+.+.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~ 377 (462)
T 1ibr_B 298 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN 377 (462)
T ss_dssp CCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTC
T ss_pred ccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 00 0134555666666431 2345777788888888887764 233445555555554
Q ss_pred CCchhHHHhhheecCCCCCCCC------ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhccc
Q 003409 433 CEFTYLSTQILHFLGTEGPKTS------DPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVD 490 (822)
Q Consensus 433 ~~~~~~~~~i~wiLGEy~~~~~------~~~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~~ 490 (822)
.....+.++++.+|.-+.... .....+..+.+.+...++.||..+..++.+++...+
T Consensus 378 -~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 378 -PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp -SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred -CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 345677778888877664322 224567777777777899999999999999987654
No 41
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.61 E-value=6.8e-06 Score=97.44 Aligned_cols=311 Identities=11% Similarity=0.079 Sum_probs=208.2
Q ss_pred chhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHH-----HHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHhc
Q 003409 135 DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIV-----KRWSNEVQEAVQSR-AALVQFHALALLHQIRQN 208 (822)
Q Consensus 135 ~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v-----~~~~~~l~~ll~d~-~~~V~~~al~lL~~i~~~ 208 (822)
+..+....++.+.+++.+.++.||.+|+.++.++....+... ...++.+..+|.+. ++.++.+|+..|..+..+
T Consensus 8 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~ 87 (644)
T 2z6h_A 8 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 87 (644)
T ss_dssp ----CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Confidence 344445567778888889999999999999999987665321 13566666777654 788999998888877654
Q ss_pred Ch--------HHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCc-----hhhHHHHHHHhccCChhhHHHHH
Q 003409 209 DR--------LAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGD-----RPFYDFLESCLRHKAEMVIFEAA 275 (822)
Q Consensus 209 d~--------~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~-----~~l~~~l~~~L~~~~~aV~~ea~ 275 (822)
+. ..+..|+.-+. ..++-.+...+..+..+... ++... ...++.|..+|++.+.-+...++
T Consensus 88 ~~~~~~i~~~g~i~~Lv~lL~---~~~~~v~~~A~~aL~nL~~~---~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~ 161 (644)
T 2z6h_A 88 REGLLAIFKSGGIPALVKMLG---SPVDSVLFYAITTLHNLLLH---QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 161 (644)
T ss_dssp HHHHHHHHTTTHHHHHHHHTT---CSSHHHHHHHHHHHHHHHHH---STTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHhC---cchhHHHHHHCCChHHHHHHHCcCCHHHHHHHH
Confidence 22 11333444443 34566666666666655333 12221 23567888888888877777777
Q ss_pred HHHhhccCCChHhH-----hhHHHHHHHHhcCCCc-hhHHHHHHh---hcc------------------CcCCCCchhhH
Q 003409 276 RAITELNGVTNREL-----TPAITVLQLFLSSSKP-VLRFAAVRT---LNK------------------SLISDQNRSIA 328 (822)
Q Consensus 276 ~~i~~l~~~~~~~~-----~~a~~~L~~~l~s~~~-n~ry~aL~~---l~~------------------~lL~d~d~sIr 328 (822)
.++..+........ ..++..|..++.+.+. ..++.+++. +.. .++.+++..++
T Consensus 162 ~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~ 241 (644)
T 2z6h_A 162 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 241 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 77777753222221 2356677777776543 344444433 211 67788889999
Q ss_pred HHHHHHHhccCCcc----hHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHH-----HHHHHHHHHhhcCC-c
Q 003409 329 TLAITTLLKTGNES----SVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRS-----LMNFLSNILREEGG-F 398 (822)
Q Consensus 329 ~~aL~lL~~l~ne~----Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~-----~v~~l~~lL~~~g~-~ 398 (822)
+.++.+|..++... .+..++..|...+.+.+.+.+..+..+++.|+...+..... .+..|+++|...++ .
T Consensus 242 ~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~ 321 (644)
T 2z6h_A 242 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 321 (644)
T ss_dssp HHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcH
Confidence 99999998887532 34567888888888888999999999999999865443332 46778888876443 3
Q ss_pred chHHHHHHHHHHHHHhCCc---hH-----HHHHHHHHHHhhcCCchhHHHhhheecCCCCC
Q 003409 399 EYKKAIVDSIVILIRDIPD---AK-----ENGLLHLCEFIEDCEFTYLSTQILHFLGTEGP 451 (822)
Q Consensus 399 ~v~~~iv~~i~~iv~~~p~---~~-----~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~ 451 (822)
.+...++..+..+....|+ .+ ..++..|.+.+.+...+.++..++|.|+..+.
T Consensus 322 ~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 322 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382 (644)
T ss_dssp HHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc
Confidence 5777788888888766564 12 24677888888776666788888999888654
No 42
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.61 E-value=1.5e-05 Score=91.78 Aligned_cols=350 Identities=11% Similarity=0.110 Sum_probs=220.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhhcc--cCh---hHHH-HHHHHHHHHhcC-CChhHHHHHHHHHHHHHhcChHH---
Q 003409 143 ERYLKQAIVDKNPVVASAALVSGIHLLQ--TTP---EIVK-RWSNEVQEAVQS-RAALVQFHALALLHQIRQNDRLA--- 212 (822)
Q Consensus 143 ~~~v~~~l~d~~p~VRk~A~la~~~l~~--~~p---e~v~-~~~~~l~~ll~d-~~~~V~~~al~lL~~i~~~d~~~--- 212 (822)
++.+.+.+.+.++-++..|+.++-|+.. .+| ++++ ..++.+.++|.. .++.++..|..+|..|...++..
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4556778899999999999999999864 445 3444 378888898864 45889999999999987655432
Q ss_pred ------HHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchh-----hHHHHHHHhccCC-----hhhHHHHHH
Q 003409 213 ------VSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRP-----FYDFLESCLRHKA-----EMVIFEAAR 276 (822)
Q Consensus 213 ------i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~-----l~~~l~~~L~~~~-----~aV~~ea~~ 276 (822)
+..|+.-+. .+++-.+-..+..+..+... ++..+.. .++.|..+|++.+ ..++..++.
T Consensus 139 vv~~GaIp~Lv~lL~---s~~~~v~e~A~~aL~nLa~d---~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 139 VVDGGAIPAFISLLA---SPHAHISEQAVWALGNIAGD---GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence 333444444 45566666666666655322 2332222 2456666776533 345666777
Q ss_pred HHhhccCC--C---hHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc----------------------CcCCCCchhhHH
Q 003409 277 AITELNGV--T---NRELTPAITVLQLFLSSSKPVLRFAAVRTLNK----------------------SLISDQNRSIAT 329 (822)
Q Consensus 277 ~i~~l~~~--~---~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~----------------------~lL~d~d~sIr~ 329 (822)
++..+... + ......++..|..++.++++.++..|+..+.. .++.+++..++.
T Consensus 213 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 292 (510)
T 3ul1_B 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 292 (510)
T ss_dssp HHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhh
Confidence 77665321 1 12335677888899999988888766655432 466888899999
Q ss_pred HHHHHHhccC--CcchHHHHHH-----HHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHH-----HHHHHHHHHhhcCC
Q 003409 330 LAITTLLKTG--NESSVDRLMK-----QITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRS-----LMNFLSNILREEGG 397 (822)
Q Consensus 330 ~aL~lL~~l~--ne~Nv~~Iv~-----eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~-----~v~~l~~lL~~~g~ 397 (822)
.++..|..++ ++.+...+++ -|...+.+.+.+.|..+..+++.++...+..... .+..|+.+|.. ++
T Consensus 293 ~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~-~~ 371 (510)
T 3ul1_B 293 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK-AD 371 (510)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS-SC
T ss_pred HHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC-CC
Confidence 9999998775 4445555543 3445566778899999999999998654443332 45567888875 67
Q ss_pred cchHHHHHHHHHHHHHhC-CchH-----HHHHHHHHHHhhcCCchhHHHhhheecC---CCCCCCCChHHHHHHHHhhcc
Q 003409 398 FEYKKAIVDSIVILIRDI-PDAK-----ENGLLHLCEFIEDCEFTYLSTQILHFLG---TEGPKTSDPSKYIRYIYNRVH 468 (822)
Q Consensus 398 ~~v~~~iv~~i~~iv~~~-p~~~-----~~~l~~L~~~l~~~~~~~~~~~i~wiLG---Ey~~~~~~~~~~i~~i~~~~~ 468 (822)
+.++.++..++..+.... ++.. ..++..|++.+.. ..+++...++|.|. ++++...+...+-..+
T Consensus 372 ~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~-~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~i----- 445 (510)
T 3ul1_B 372 FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA-KDTKIIQVILDAISNIFQAAEKLGETEKLSIMI----- 445 (510)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhHhccchHHHHHHH-----
Confidence 788888888998888753 3322 2357778888765 35667666666543 2233333222221111
Q ss_pred CCCHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHhcCCCCC
Q 003409 469 LENATVRAAAVSTLAKFGAMV-DALKPRVFVLLRRCLYDGDDE 510 (822)
Q Consensus 469 ~e~~~vr~~~ltal~K~~~~~-~~~~~~i~~ll~~~~~d~d~E 510 (822)
..+..+..+-.+-... ++++.....++++|..+.|+|
T Consensus 446 -----ee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~ 483 (510)
T 3ul1_B 446 -----EECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEE 483 (510)
T ss_dssp -----HHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-----
T ss_pred -----HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcccc
Confidence 1122344444443322 367778888999998765544
No 43
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.56 E-value=8.5e-07 Score=99.76 Aligned_cols=350 Identities=9% Similarity=0.043 Sum_probs=199.4
Q ss_pred hhcccCCccchhHHHHHHHHhCCC-Ccchhh-hhhhHHhhcCCCCHHHHHHHHHHhcCCC------------------ch
Q 003409 77 KLFQSRDIGLRRMVYLMIKELSPS-ADEVII-VTSSLMKDMTSKTDMYRANAIRVLCRIT------------------DG 136 (822)
Q Consensus 77 kl~~s~d~~lKrl~YL~l~~~~~~-~~~~lL-viNsl~kDl~~~n~~vr~lALr~l~~I~------------------~~ 136 (822)
..+.|+|...|+..--++.++... .+.... ...-+. + .+.++.+|-+|.-.|.+.. ++
T Consensus 8 ~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~-~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~ 85 (462)
T 1ibr_B 8 EKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLA-N-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDA 85 (462)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH-c-CCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCH
Confidence 346678888888888888765432 233322 223333 2 3457788887776665542 34
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhccc-Chh-HHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHhcC-hH
Q 003409 137 TLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQT-TPE-IVKRWSNEVQEAVQSR--AALVQFHALALLHQIRQND-RL 211 (822)
Q Consensus 137 ~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~-~pe-~v~~~~~~l~~ll~d~--~~~V~~~al~lL~~i~~~d-~~ 211 (822)
+.-+.+-..+.+.+.+.++.| ++++.++..+... .|+ .-..+++.+...+.+. ++.+...|+..|..+...- +.
T Consensus 86 ~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~ 164 (462)
T 1ibr_B 86 NARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE 164 (462)
T ss_dssp HHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCch
Confidence 455667777778888988899 8888887766532 121 1123445555666676 7888888888888777532 11
Q ss_pred ----HHHHHHH----HhcCCCCCChhHHHHHHHHHHhhh---hcccCCCC-CchhhHHHHHHHhccCChhhHHHHHHHHh
Q 003409 212 ----AVSKLVT----SLTRGTVRSPLAQCLLIRYTTQVI---REAATTQT-GDRPFYDFLESCLRHKAEMVIFEAARAIT 279 (822)
Q Consensus 212 ----~i~~Li~----~l~~~~~~~~w~~v~llr~l~~~~---~~~~~d~~-~~~~l~~~l~~~L~~~~~aV~~ea~~~i~ 279 (822)
.+..+++ .+. +..+++-.....++.+..++ ... .+.. ....+++.+...+.+.+..|.-.+++++.
T Consensus 165 ~~~~~~~~ll~~l~~~l~-~~~~~~~vr~~a~~~l~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~ 242 (462)
T 1ibr_B 165 QLQDKSNEILTAIIQGMR-KEEPSNNVKLAATNALLNSLEFTKAN-FDKESERHFIMQVVCEATQCPDTRVRVAALQNLV 242 (462)
T ss_dssp GTGGGHHHHHHHHHHHHS-TTCCCHHHHHHHHHHHHHHTTTTHHH-HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 1122222 232 21124444444555555422 110 0010 01223555555555566666666666665
Q ss_pred hccCCChH----hHh-hHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHHHHHHHhccCCcc------------
Q 003409 280 ELNGVTNR----ELT-PAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNES------------ 342 (822)
Q Consensus 280 ~l~~~~~~----~~~-~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~ne~------------ 342 (822)
.+....+. .+. ..+..+...+...++.+|..+ ++.+..++...
T Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a--------------------~~~l~~~~~~~~~~~~~~~~~~~ 302 (462)
T 1ibr_B 243 KIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQG--------------------IEFWSNVCDEEMDLAIEASEAAE 302 (462)
T ss_dssp HHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHH--------------------HHHHHHHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH--------------------HHHHHHHHHHHHHHHHhcccccc
Confidence 55311111 111 223333333334444444444 44433333211
Q ss_pred ---------------hHHHHHHHHHHhhhhc-------CHHHHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHhhcCCcc
Q 003409 343 ---------------SVDRLMKQITNFMSDI-------ADEFKIVVVEAIRSLCLKFPLK-YRSLMNFLSNILREEGGFE 399 (822)
Q Consensus 343 ---------------Nv~~Iv~eL~~y~~~~-------~~~~k~~~v~aI~~la~k~~~~-~~~~v~~l~~lL~~~g~~~ 399 (822)
.+..++..|...+.+. +...|..+...++.++..++.. ...++.++...|.+ .+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~ 381 (462)
T 1ibr_B 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN-PDWR 381 (462)
T ss_dssp SSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTC-SSHH
T ss_pred cCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CChH
Confidence 2355666666666532 2357999999999999998842 23455555566654 4566
Q ss_pred hHHHHHHHHHHHHHhCC-c----hHHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCC
Q 003409 400 YKKAIVDSIVILIRDIP-D----AKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKT 453 (822)
Q Consensus 400 v~~~iv~~i~~iv~~~p-~----~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~ 453 (822)
++..++..+..+..... + ....++..+...+.|. ++.++..++|.+|.++...
T Consensus 382 ~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 382 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhc
Confidence 78888888888776432 2 1245778888888774 4789999999999987643
No 44
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.51 E-value=1.5e-05 Score=101.72 Aligned_cols=376 Identities=12% Similarity=0.054 Sum_probs=220.1
Q ss_pred hhHHhhcCCCCHHHHHHHHHHhcCCC-------chhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChh-HHHHHH
Q 003409 109 SSLMKDMTSKTDMYRANAIRVLCRIT-------DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPE-IVKRWS 180 (822)
Q Consensus 109 Nsl~kDl~~~n~~vr~lALr~l~~I~-------~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe-~v~~~~ 180 (822)
+.+...+.|+++-+|-.|+..|.+.. ++.....+.+.+.+.+.|+++.||+.|+.++..+....++ .+..++
T Consensus 9 ~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~ 88 (1230)
T 1u6g_C 9 SNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIV 88 (1230)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45666689999999999988776432 2345677888899999999999999999999998876654 455677
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhcChH----------HHHHHHHHhc---CCCCCChhHHHHHHHHHHhhhhcc--
Q 003409 181 NEVQEAVQSRAALVQFHALALLHQIRQNDRL----------AVSKLVTSLT---RGTVRSPLAQCLLIRYTTQVIREA-- 245 (822)
Q Consensus 181 ~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~----------~i~~Li~~l~---~~~~~~~w~~v~llr~l~~~~~~~-- 245 (822)
+.+.+.+.|.++.|...|...|-.+...-+. ....+++.+. .+ ..++-.+...++.+...+...
T Consensus 89 ~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~~~~~~~~al~~l~~~~~~~~~ 167 (1230)
T 1u6g_C 89 DTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QEDVSVQLEALDIMADMLSRQGG 167 (1230)
T ss_dssp HHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CSCHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhHh
Confidence 7788888888887776666666665533211 2334444322 11 133444455566665543220
Q ss_pred cCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCC-hHhHhhHHHHHHHHhc-CCCchhHHHHHHhhcc------
Q 003409 246 ATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVT-NRELTPAITVLQLFLS-SSKPVLRFAAVRTLNK------ 317 (822)
Q Consensus 246 ~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~-~~~~~~a~~~L~~~l~-s~~~n~ry~aL~~l~~------ 317 (822)
...| ....+++.+.+.|.+.++.|.-.|++++..+.... ...+...+..|...+. ..++..|-.++..+..
T Consensus 168 ~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~ 246 (1230)
T 1u6g_C 168 LLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG 246 (1230)
T ss_dssp SCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS
T ss_pred HHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH
Confidence 1122 33567777788888888899999999998875322 2223333443333333 2223344333333211
Q ss_pred ---------------CcCCCCchhhHHHHHHHHhc---cCCcc---hHHHHHHHHHHhhhh-------------------
Q 003409 318 ---------------SLISDQNRSIATLAITTLLK---TGNES---SVDRLMKQITNFMSD------------------- 357 (822)
Q Consensus 318 ---------------~lL~d~d~sIr~~aL~lL~~---l~ne~---Nv~~Iv~eL~~y~~~------------------- 357 (822)
..+.|++..+|..++..+-. .+.+. .+..|+..+..++..
T Consensus 247 ~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~ 326 (1230)
T 1u6g_C 247 HRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDAD 326 (1230)
T ss_dssp GGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccccccc
Confidence 23467777888776665543 33333 455566666555431
Q ss_pred ------------------cCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHH----HHhhcCCcchHHHHHHHHHHHHHhC
Q 003409 358 ------------------IADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSN----ILREEGGFEYKKAIVDSIVILIRDI 415 (822)
Q Consensus 358 ------------------~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~----lL~~~g~~~v~~~iv~~i~~iv~~~ 415 (822)
...+.|..+..++..++..+|.....++..++. .+.+ ....+..+++..+..+++..
T Consensus 327 ~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~ 405 (1230)
T 1u6g_C 327 GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKE-REENVKADVFHAYLSLLKQT 405 (1230)
T ss_dssp ------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSC-SSSHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHHh
Confidence 001247888899999998777544444444333 3333 23457778888888777643
Q ss_pred Cc-------------------hHHHHHHHHHH----HhhcCCchhHHHhhheecCCCCCCC-----CChHHHHHHHHhhc
Q 003409 416 PD-------------------AKENGLLHLCE----FIEDCEFTYLSTQILHFLGTEGPKT-----SDPSKYIRYIYNRV 467 (822)
Q Consensus 416 p~-------------------~~~~~l~~L~~----~l~~~~~~~~~~~i~wiLGEy~~~~-----~~~~~~i~~i~~~~ 467 (822)
.. .....+..+.. .+.+. .+..+..++..+|+..... +.-..++..+.+.+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~-~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L 484 (1230)
T 1u6g_C 406 RPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK-SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSL 484 (1230)
T ss_dssp CCC------------CCCHHHHHHHHTTHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHT
T ss_pred ccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHH
Confidence 21 11223333333 35443 3344555555565543221 12245555666555
Q ss_pred cCCC--HHHHHHHHHHHHHHhhc
Q 003409 468 HLEN--ATVRAAAVSTLAKFGAM 488 (822)
Q Consensus 468 ~~e~--~~vr~~~ltal~K~~~~ 488 (822)
...+ ..+|..++.++..+...
T Consensus 485 ~d~~~~~~v~~~a~~~l~~~~~~ 507 (1230)
T 1u6g_C 485 NDKSSSSNLKIDALSCLYVILCN 507 (1230)
T ss_dssp TCSSSCHHHHHHHHHHHHHHHHS
T ss_pred cCCCCcchHHHHHHHHHHHHHHh
Confidence 4443 48899888888887643
No 45
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.45 E-value=2.8e-05 Score=79.51 Aligned_cols=67 Identities=13% Similarity=0.050 Sum_probs=47.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcC
Q 003409 143 ERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQSRAALVQFHALALLHQIRQND 209 (822)
Q Consensus 143 ~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~-----~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d 209 (822)
++.+.+.+.+.++.+|..|+.++..+....++..+ ..++.+..++.+.++.+..+|+..|..+..++
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 75 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 75 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 45567777777788888888888887776664433 25666777777777777777777777776553
No 46
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.44 E-value=7.1e-05 Score=86.45 Aligned_cols=350 Identities=11% Similarity=0.114 Sum_probs=213.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhhcc--cCh---hHHH-HHHHHHHHHhc-CCChhHHHHHHHHHHHHHhcChHH---
Q 003409 143 ERYLKQAIVDKNPVVASAALVSGIHLLQ--TTP---EIVK-RWSNEVQEAVQ-SRAALVQFHALALLHQIRQNDRLA--- 212 (822)
Q Consensus 143 ~~~v~~~l~d~~p~VRk~A~la~~~l~~--~~p---e~v~-~~~~~l~~ll~-d~~~~V~~~al~lL~~i~~~d~~~--- 212 (822)
++.+.+.+.+.++-++..|+.++.++.. .+| .+++ ..++.+..+|. +.++.++..|..+|..|...++..
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4556778888999999999999988763 344 2343 37788888885 456889999999999998765432
Q ss_pred ------HHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchh-----hHHHHHHHhccCC-----hhhHHHHHH
Q 003409 213 ------VSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRP-----FYDFLESCLRHKA-----EMVIFEAAR 276 (822)
Q Consensus 213 ------i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~-----l~~~l~~~L~~~~-----~aV~~ea~~ 276 (822)
+..|+.-+. .+++-.+-..+..+..+... ++..+.. .++.|..+|...+ ..++-.++.
T Consensus 158 vv~~Gaip~Lv~LL~---s~~~~v~e~A~~aL~nLa~~---~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 231 (529)
T 3tpo_A 158 VVDGGAIPAFISLLA---SPHAHISEQAVWALGNIAGA---GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 231 (529)
T ss_dssp HHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhcc---CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHH
Confidence 233444333 34555555666666655322 2333322 2455666665432 235556666
Q ss_pred HHhhccCC--C---hHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc----------------------CcCCCCchhhHH
Q 003409 277 AITELNGV--T---NRELTPAITVLQLFLSSSKPVLRFAAVRTLNK----------------------SLISDQNRSIAT 329 (822)
Q Consensus 277 ~i~~l~~~--~---~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~----------------------~lL~d~d~sIr~ 329 (822)
++..+... + ......++..|..++.++++.++..|+..+.. .++.+++..++.
T Consensus 232 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 311 (529)
T 3tpo_A 232 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 311 (529)
T ss_dssp HHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred HHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHH
Confidence 66665321 1 12345677888889999998887766555432 566888899999
Q ss_pred HHHHHHhccC--CcchHHHHH-----HHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHH-----HHHHHHHHHhhcCC
Q 003409 330 LAITTLLKTG--NESSVDRLM-----KQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRS-----LMNFLSNILREEGG 397 (822)
Q Consensus 330 ~aL~lL~~l~--ne~Nv~~Iv-----~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~-----~v~~l~~lL~~~g~ 397 (822)
.++..|..++ ++.+...++ .-|...+.+.+.+.+.+++.+++.++...+..... .+..|+.+|.. ++
T Consensus 312 ~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~ 390 (529)
T 3tpo_A 312 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK-AD 390 (529)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS-SC
T ss_pred HHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC-CC
Confidence 9999998776 444555554 34666777788999999999999999754443322 45567777774 67
Q ss_pred cchHHHHHHHHHHHHHhC-CchHH-----HHHHHHHHHhhcCCchhHHHhhheecCC---CCCCCCChHHHHHHHHhhcc
Q 003409 398 FEYKKAIVDSIVILIRDI-PDAKE-----NGLLHLCEFIEDCEFTYLSTQILHFLGT---EGPKTSDPSKYIRYIYNRVH 468 (822)
Q Consensus 398 ~~v~~~iv~~i~~iv~~~-p~~~~-----~~l~~L~~~l~~~~~~~~~~~i~wiLGE---y~~~~~~~~~~i~~i~~~~~ 468 (822)
..++.+++.++..+.... ++... .++..|++.+.. ..+++...++|.|.. +++...+...+-..+ .
T Consensus 391 ~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~-~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~i-e--- 465 (529)
T 3tpo_A 391 FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA-KDTKIIQVILDAISNIFQAAEKLGETEKLSIMI-E--- 465 (529)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH-H---
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhHhccChHHHHHHH-H---
Confidence 778888888888887643 33222 357778888864 346666666655432 222222222211111 0
Q ss_pred CCCHHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHhcCCCCC
Q 003409 469 LENATVRAAAVSTLAKFGAM-VDALKPRVFVLLRRCLYDGDDE 510 (822)
Q Consensus 469 ~e~~~vr~~~ltal~K~~~~-~~~~~~~i~~ll~~~~~d~d~E 510 (822)
.+.++..+-.+-.+ .++++.....++++|..+.|+|
T Consensus 466 ------e~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~ 502 (529)
T 3tpo_A 466 ------ECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEE 502 (529)
T ss_dssp ------HTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC------
T ss_pred ------HCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcccc
Confidence 11122223222222 1356777788888888755444
No 47
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.43 E-value=1e-06 Score=95.93 Aligned_cols=261 Identities=10% Similarity=0.076 Sum_probs=141.8
Q ss_pred HHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHH
Q 003409 49 VITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIR 128 (822)
Q Consensus 49 ~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr 128 (822)
.++|++|++..-+.-..-|+--+-..+.|=+++++...|=+.-=+++.+.+ ++.+--+...+++=+.|+||++|..|+=
T Consensus 83 ~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~-~~m~~~l~~~lk~~L~d~~pyVRk~A~l 161 (355)
T 3tjz_B 83 TLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITD-STMLQAIERYMKQAIVDKVPSVSSSALV 161 (355)
T ss_dssp HHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 488899988754311123555555566778888888777666666655542 2334567788999999999999999998
Q ss_pred HhcCC--CchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 003409 129 VLCRI--TDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIR 206 (822)
Q Consensus 129 ~l~~I--~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~ 206 (822)
+..++ ..|++++.....++.++.|++|.|--.|+.+++.+.+..+..+.+++..+.+. .-+++..+..-+.++..+.
T Consensus 162 ~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~ 240 (355)
T 3tjz_B 162 SSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRH-GLKSPFAYCMMIRVASRQL 240 (355)
T ss_dssp HHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC-
T ss_pred HHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcC-CCcChHHHHHHHHHHHHhc
Confidence 88775 56889999999999999999999998887778888776766666666655432 1124444433333333344
Q ss_pred hcC-hHH---HHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhcc
Q 003409 207 QND-RLA---VSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELN 282 (822)
Q Consensus 207 ~~d-~~~---i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~ 282 (822)
+.| +.. +..++..+.. ..++-......|.+..+... ++.........|..+|.++.+.+.|-|++.+..+.
T Consensus 241 ~~d~~~~~~~~~~~l~~~L~--~~~~aVvyEa~k~I~~l~~~---~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~ 315 (355)
T 3tjz_B 241 EDEDGSRDSPLFDFIESCLR--NKHEMVVYEAASAIVNLPGC---SAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVA 315 (355)
T ss_dssp ----------------CCCC--CSSHHHHHHHHHHHTC--------------CCCTHHHHHHSSSSSSHHHHHHCC----
T ss_pred cccchhhHHHHHHHHHHHHc--CCChHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 444 322 3333333321 45677777777777664221 23333445678888899999999999999998887
Q ss_pred CCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhc
Q 003409 283 GVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLN 316 (822)
Q Consensus 283 ~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~ 316 (822)
...+..+..+..-+..++++++..++-.|+-+|-
T Consensus 316 ~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 316 MKHPSAVTACNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp ----------------------------------
T ss_pred HHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence 6567777778888888999888888888887753
No 48
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.41 E-value=6e-06 Score=82.93 Aligned_cols=187 Identities=18% Similarity=0.099 Sum_probs=118.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcC
Q 003409 143 ERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTR 222 (822)
Q Consensus 143 ~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~ 222 (822)
.+.+.+.+.|.++.||..|+.++.++-. ++. ++.+.+++.|.++.|...|+..|..+.. +..+..|+..+.
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~--~~~----~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l~- 91 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD--ERA----VEPLIKALKDEDAWVRRAAADALGQIGD--ERAVEPLIKALK- 91 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--GGG----HHHHHHHTTCSCHHHHHHHHHHHHHHCC--GGGHHHHHHHTT-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC--ccH----HHHHHHHHcCCCHHHHHHHHHHHHhhCC--HHHHHHHHHHHc-
Confidence 3445566779999999999999988743 333 3444566778888888888887777653 345555665554
Q ss_pred CCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcC
Q 003409 223 GTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSS 302 (822)
Q Consensus 223 ~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s 302 (822)
..+|......++.+..+ . ++ ..++.|...|.+.++.|...|+.++..+.. + .++..|..++
T Consensus 92 --~~~~~vr~~a~~aL~~~--~---~~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~----~~~~~L~~~l-- 152 (211)
T 3ltm_A 92 --DEDGWVRQSAAVALGQI--G---DE----RAVEPLIKALKDEDWFVRIAAAFALGEIGD--E----RAVEPLIKAL-- 152 (211)
T ss_dssp --CSSHHHHHHHHHHHHHH--C---CG----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----GGHHHHHHHT--
T ss_pred --CCCHHHHHHHHHHHHHh--C---cH----HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--H----HHHHHHHHHH--
Confidence 45677777777777664 1 22 345667777777788888888888877742 1 2333444444
Q ss_pred CCchhHHHHHHhhccCcCCCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcc
Q 003409 303 SKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPL 379 (822)
Q Consensus 303 ~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~ 379 (822)
+|+|..+|..++..|..++. ...+..|..++.+-+..+|..++.+++.+..+.++
T Consensus 153 ------------------~d~~~~vr~~a~~aL~~~~~----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 153 ------------------KDEDGWVRQSAADALGEIGG----ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp ------------------TCSSHHHHHHHHHHHHHHCS----HHHHHHHHHHHHHCCHHHHHHHHHHHHC-------
T ss_pred ------------------cCCCHHHHHHHHHHHHHhCc----hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC
Confidence 45555566666666666554 34445555556667778888888888887766554
No 49
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.36 E-value=2.1e-05 Score=78.29 Aligned_cols=185 Identities=16% Similarity=0.107 Sum_probs=142.6
Q ss_pred hhhhhhhhhhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHH
Q 003409 69 TEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQ 148 (822)
Q Consensus 69 s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~ 148 (822)
......+++++.++|...|+..--.+..+... -++..|.+-+.++++.+|..|+++|+.++.++.++ .+.+
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~-----~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~----~L~~ 83 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-----RAVEPLIKALKDEDAWVRRAAADALGQIGDERAVE----PLIK 83 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHH----HHHH
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh-----hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHH----HHHH
Confidence 34556677889999999999888888766532 13456667778999999999999999999886654 4556
Q ss_pred hhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCCh
Q 003409 149 AIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSP 228 (822)
Q Consensus 149 ~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~ 228 (822)
++.|.+|.||..|+.++.++- .|+. ++.+..++.|.++.|...|+..|..+.. +.++..|+..+. ..++
T Consensus 84 ~l~d~~~~vr~~a~~aL~~~~--~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l~---d~~~ 152 (201)
T 3ltj_A 84 ALKDEDGWVRQSAAVALGQIG--DERA----VEPLIKALKDEDWFVRIAAAFALGEIGD--ERAVEPLIKALK---DEDG 152 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHC--CGGG----HHHHHHHTTCSSHHHHHHHHHHHHHHTC--GGGHHHHHHHTT---CSSH
T ss_pred HHcCCCHHHHHHHHHHHHHhC--cHHH----HHHHHHHHcCCCHHHHHHHHHHHHHhCC--HHHHHHHHHHHc---CCCH
Confidence 788999999999999999874 3433 4445567888999999999888887754 355666666554 4678
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhcc
Q 003409 229 LAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELN 282 (822)
Q Consensus 229 w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~ 282 (822)
+.....++.+..+ . + ....+.|..++++.++.|...|+.++-.+.
T Consensus 153 ~vr~~A~~aL~~~--~---~----~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 153 WVRQSAADALGEI--G---G----ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHHHH--C---S----HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHh--C---c----hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 8888888888775 1 1 346788888888889999999999988774
No 50
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.35 E-value=1.3e-05 Score=82.51 Aligned_cols=213 Identities=16% Similarity=0.155 Sum_probs=132.1
Q ss_pred hhhHHhhcCCCCHHHHHHHHHHhcCCCc--hhhHH-----HHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHH--
Q 003409 108 TSSLMKDMTSKTDMYRANAIRVLCRITD--GTLLT-----QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKR-- 178 (822)
Q Consensus 108 iNsl~kDl~~~n~~vr~lALr~l~~I~~--~~~~~-----~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~-- 178 (822)
.+.+.+.|.++|+.+|-.|+++|+++.. .+..+ ..++.+.+.+.+.++.||..|+.++..+...+++....
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4667777888888888777777765433 12122 25678889999999999999999999998777665432
Q ss_pred ---HHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhh
Q 003409 179 ---WSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPF 255 (822)
Q Consensus 179 ---~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l 255 (822)
.++.+..++.+.++.+..+|+.+|..+...+......++ . ...
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~----------------------~------------~~~ 139 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI----------------------D------------AGA 139 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH----------------------H------------TTH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHH----------------------H------------CCC
Confidence 677788888888888888888888877655322111110 0 013
Q ss_pred HHHHHHHhccCChhhHHHHHHHHhhccCCChHhHh-----hHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHH
Q 003409 256 YDFLESCLRHKAEMVIFEAARAITELNGVTNRELT-----PAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATL 330 (822)
Q Consensus 256 ~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~-----~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~ 330 (822)
++.|..+|++.+..|..+|+.++.++...++.... .++..|..++. +++..++..
T Consensus 140 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--------------------~~~~~v~~~ 199 (252)
T 4db8_A 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--------------------SPNEQILQE 199 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGG--------------------CSSHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHC--------------------CCCHHHHHH
Confidence 45566666677777888888888877643322221 12233333333 334445555
Q ss_pred HHHHHhccC--CcchHHH-----HHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 003409 331 AITTLLKTG--NESSVDR-----LMKQITNFMSDIADEFKIVVVEAIRSLC 374 (822)
Q Consensus 331 aL~lL~~l~--ne~Nv~~-----Iv~eL~~y~~~~~~~~k~~~v~aI~~la 374 (822)
|+..|..++ ++.+... ++..|...+.+.+++.|..+..+++.++
T Consensus 200 a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 200 ALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 555555443 2233332 3344556666666777777777777665
No 51
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.34 E-value=3.7e-05 Score=78.66 Aligned_cols=202 Identities=21% Similarity=0.161 Sum_probs=120.4
Q ss_pred hhHHhhcCCCCHHHHHHHHHHhcCCCc--hhhHH-----HHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH----
Q 003409 109 SSLMKDMTSKTDMYRANAIRVLCRITD--GTLLT-----QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK---- 177 (822)
Q Consensus 109 Nsl~kDl~~~n~~vr~lALr~l~~I~~--~~~~~-----~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~---- 177 (822)
..|.+-|.++++.+|-.|+++|+++.. ++... ...+.+.+.+.+.++.||..|+.++..+...+++...
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 84 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 84 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 455566666677777777777666532 21222 2456666677777777777777777777665554333
Q ss_pred -HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHH---------HHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccC
Q 003409 178 -RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLA---------VSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAAT 247 (822)
Q Consensus 178 -~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~---------i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~ 247 (822)
..++.+..++.+.++.+..+|+.+|..+...++.. +..|+.-+. ..++..+...++.+..+...
T Consensus 85 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~---~~~~~~~~~a~~~L~~l~~~--- 158 (252)
T 4hxt_A 85 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---STDSEVQKEAARALANIASG--- 158 (252)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTS---
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHcC---
Confidence 25566666666666777777777777766443322 222333332 33455555556655554322
Q ss_pred CCCCc-----hhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhH-----hhHHHHHHHHhcCCCchhHHHHHHhhc
Q 003409 248 TQTGD-----RPFYDFLESCLRHKAEMVIFEAARAITELNGVTNREL-----TPAITVLQLFLSSSKPVLRFAAVRTLN 316 (822)
Q Consensus 248 d~~~~-----~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~-----~~a~~~L~~~l~s~~~n~ry~aL~~l~ 316 (822)
++... ...++.|..+|++.++.|...|+.++..+...++... ..++..|..++.++++.+|..|+..|.
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 237 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE 237 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 11111 1256778888888889999999999999864333322 234566667777766666666665553
No 52
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=98.21 E-value=9.4e-05 Score=76.60 Aligned_cols=203 Identities=12% Similarity=0.075 Sum_probs=127.2
Q ss_pred EEEEEeecceEEEEEEeecCCCcccceeEEEEEecCCCCCceEEEeccC-CCCCCCCCceEEEEEeeCCCCCceeeeece
Q 003409 593 NVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPL-RSLPYDSPGQIFGAFEKPEGVPAVGKFSNM 671 (822)
Q Consensus 593 ~~~kh~~~~~ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~ip~-~~L~~~~~~~~~v~~~~~~~~~~~~~f~~~ 671 (822)
++.=....+.|.++..++|+. .++++++.+++.-..- ++.+.....+ ..|+|+++..+.+-+.... ....+.....
T Consensus 47 ~g~f~r~~g~i~l~l~~~N~s-~~~is~faIQfNkNsF-GL~p~~~~~~~~~L~pgqs~~v~lpl~~~~-~~~~~~p~~~ 123 (258)
T 2g30_A 47 SGTFTHRQGHIYMEMNFTNKA-LQHMTDFAIQFNKNSF-GVIPSTPLAIHTPLMPNQSIDVSLPLNTLG-PVMKMEPLNN 123 (258)
T ss_dssp EEEEEEETTEEEEEEEEEECS-SSCBCCCEEEECCBTT-CCEESSCCCCCSCBCTTCEEEEEEEEESCS-CBCCCSSTTE
T ss_pred EEEEEEeCCEEEEEEEEecCC-ccceeeeEEEEccccc-CcccCccccCCCccCCCCcEEEEEeeecCC-cccCCCCCch
Confidence 333333478999999999998 5699999999974332 2555432222 4599998776666665432 1111111112
Q ss_pred eeeEEeeeCCCCCCCCCCCccceEEccceeecccccccc-cCcC--chHHHHhhcCCCceeEEEEecCCCCcHHHHHHHH
Q 003409 672 LRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMK-VGVS--NFRNAWESIGPDFERVDEYGLGPRESLAEAVSAV 748 (822)
Q Consensus 672 L~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~~dfi~p-~~~~--~F~~~W~~~~~~~e~~~~~~l~~~~~~~~a~~~i 748 (822)
|-.-++ .+. +-+-.. +++.+.-++.| ..++ +|.+.|..++..+|.+.++.- ..-+. +++.+.
T Consensus 124 LQVAIK---tn~---------~vfYF~-~~ipl~~l~~e~g~m~~~~F~~~Wk~ip~~nE~~~~i~~-~~~~~-~~i~~k 188 (258)
T 2g30_A 124 LQVAVK---NNI---------DVFYFS-CLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKE-CHLNA-DTVSSK 188 (258)
T ss_dssp EEEEEE---CSS---------CEEEEE-EECCGGGGBCSCCCCCHHHHHHHHHHSCGGGCEEEEETT-CCCCH-HHHHHH
T ss_pred heeeee---cCC---------ceEEEE-eecCHHHhcCCcCccCHHHHHHHHhhCCCccceeEeccc-CcCCH-HHHHHH
Confidence 223333 111 222222 44444456666 3454 799999999766676655542 33343 778888
Q ss_pred HHhhCCcccCCCccccCCCccceEEEEEEEecCceEEEEEEEeecCCcceEEEEEEecCCcchHHHHHHHHh
Q 003409 749 ISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVA 820 (822)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~l~~ag~~~~~~~vl~~~~~~~~~~~~~~~~~~vRs~~~~v~~~v~~~~~ 820 (822)
++.-|+..+...+ + .+...+++++++..+..+|+.+.+- .+ +-.+++.+||++..++..+.+++.
T Consensus 189 L~~~nif~Va~r~-~---~~q~~ly~S~kt~n~i~vL~el~~~--~~-~~~v~l~vks~~~~i~~li~~~~~ 253 (258)
T 2g30_A 189 LQNNNVYTIAKRN-V---EGQDMLYQSLKLTNGIWILAELRIQ--PG-NPNYTLSLKCRAPEVSQYIYQVYD 253 (258)
T ss_dssp HHHTTCEEEEEEE-E---TTEEEEEEEEEBTTSCEEEEEEEEC--SS-CSSEEEEEEESSGGGHHHHHHHHH
T ss_pred HHHCCeEEEEeec-C---CCCceEEEEEEccCCcEEEEEEEEc--cC-CCcEEEEEecCCchHHHHHHHHHH
Confidence 8888888775432 2 1344899999996666677666653 33 225889999999999999988764
No 53
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.08 E-value=8.5e-05 Score=76.33 Aligned_cols=142 Identities=15% Similarity=0.124 Sum_probs=109.4
Q ss_pred hhhhhhhhhcccCCccchhHHHHHHHHhCCCCcc---hhh---hhhhHHhhcCCCCHHHHHHHHHHhcCCCc--hhhHHH
Q 003409 70 EVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADE---VII---VTSSLMKDMTSKTDMYRANAIRVLCRITD--GTLLTQ 141 (822)
Q Consensus 70 ~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~---~lL---viNsl~kDl~~~n~~vr~lALr~l~~I~~--~~~~~~ 141 (822)
.-|..++++++|+|...++-+--.+..++...++ .++ ++..|.+=|.++++.+|..|+++|+++.. ++..+.
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4577788899999999888777777443321111 122 45677888889999999999999999875 343333
Q ss_pred -----HHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChH
Q 003409 142 -----IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL 211 (822)
Q Consensus 142 -----l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~-----~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~ 211 (822)
..+.+.+++.+.++.||+.|+.++..+....+.... ..++.+.+++.+.++.|...|+..|..+...++.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 678889999999999999999999999876654422 3778888999999999999999999999876543
No 54
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.93 E-value=0.00048 Score=68.53 Aligned_cols=179 Identities=16% Similarity=0.137 Sum_probs=128.3
Q ss_pred hhhhhhhhhcccCCccchhHHHHHHHHhCCCCcch---hh---hhhhHHhhcCCCCHHHHHHHHHHhcCCC--chhhHHH
Q 003409 70 EVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEV---II---VTSSLMKDMTSKTDMYRANAIRVLCRIT--DGTLLTQ 141 (822)
Q Consensus 70 ~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~~---lL---viNsl~kDl~~~n~~vr~lALr~l~~I~--~~~~~~~ 141 (822)
..+..+++++.++|..+++-...++..++..+++. ++ ++..|.+=|.++++.+|..|+++|+++. .++..+.
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 34556778889999999998888888887543331 22 4567778888899999999999999986 3443333
Q ss_pred -----HHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChH
Q 003409 142 -----IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL 211 (822)
Q Consensus 142 -----l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~-----~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~ 211 (822)
..+.+.+++.+.++.||+.|+.++..+....++..+ ..++.+.+++.+.++.+..+|+..|..+...++.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence 457888899999999999999999999887776543 3677888888888888888888888877664322
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhcc
Q 003409 212 AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELN 282 (822)
Q Consensus 212 ~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~ 282 (822)
.... +.. ...++.|..++++.++.|..+|+.++-.+.
T Consensus 172 ~~~~----------------------~~~------------~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 172 QKQA----------------------VKE------------AGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHH----------------------HHH------------TTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHH----------------------HHH------------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 1110 100 113566666777777778878877776653
No 55
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.91 E-value=7.5e-05 Score=74.69 Aligned_cols=180 Identities=9% Similarity=0.075 Sum_probs=119.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhcC-----hHHHHHHHHHhc-CCCCCChhHHHHHHHHHHhhhhcccCCCCCc
Q 003409 179 WSNEVQEAVQSRAALVQFHALALLHQIRQND-----RLAVSKLVTSLT-RGTVRSPLAQCLLIRYTTQVIREAATTQTGD 252 (822)
Q Consensus 179 ~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d-----~~~i~~Li~~l~-~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~ 252 (822)
-+..+.+++.|+|+.|..+|+.+|.++-+.- +..+.+++..+- --...++=.-++-+|.+..++...|++|+.-
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4555667788888888888888888875541 223445554332 1114556666777787777665545566666
Q ss_pred hhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHHHH
Q 003409 253 RPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAI 332 (822)
Q Consensus 253 ~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL 332 (822)
.++.+.+..++.+.+.....||+...-.+. .........+.+..++.|+++.++-+|++.+.
T Consensus 114 ~Kl~~aL~dlik~~~~il~~eaae~Lgklk--v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~---------------- 175 (265)
T 3b2a_A 114 LKAAKTLVSLLESPDDMMRIETIDVLSKLQ--PLEDSKLVRTYINELVVSPDLYTKVAGFCLFL---------------- 175 (265)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHCC--BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhCcCC--cccchHHHHHHHHHHHhCCChhHHHHHHHHHH----------------
Confidence 778889999999999999999999998884 23344567788888888777776666665432
Q ss_pred HHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHh
Q 003409 333 TTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLK 376 (822)
Q Consensus 333 ~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k 376 (822)
++.-...+.++++.|++|+..+++.-|+..+..++.++..+..+
T Consensus 176 eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 176 NMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 22222234455667777777777666666666666666665543
No 56
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.89 E-value=0.00059 Score=67.85 Aligned_cols=183 Identities=16% Similarity=0.127 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHH
Q 003409 139 LTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAV 213 (822)
Q Consensus 139 ~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~-----~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i 213 (822)
-+...+.+.+++.+.++.||..|+.++..+....++... ..++.+..++.+.++.++..|+..|..+...++...
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 344567888999999999999999999999877776544 256778888888888888888888887765432211
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhH----
Q 003409 214 SKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNREL---- 289 (822)
Q Consensus 214 ~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~---- 289 (822)
..++ . ...++.|..+|++.++.|..+|+.++.++....+...
T Consensus 90 ~~i~----------------------~------------~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 135 (210)
T 4db6_A 90 QAVI----------------------D------------AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135 (210)
T ss_dssp HHHH----------------------H------------TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHH----------------------H------------CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1111 0 0125566667777778888888888888864333222
Q ss_pred -hhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHHHHHHHhccCCc--chHHH-----HHHHHHHhhhhcCHH
Q 003409 290 -TPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNE--SSVDR-----LMKQITNFMSDIADE 361 (822)
Q Consensus 290 -~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~ne--~Nv~~-----Iv~eL~~y~~~~~~~ 361 (822)
..++..|..++.+ ++..++..|+..|..++.. .+... .+..|...+.+.+.+
T Consensus 136 ~~~~i~~L~~ll~~--------------------~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~ 195 (210)
T 4db6_A 136 DAGALPALVQLLSS--------------------PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK 195 (210)
T ss_dssp HTTHHHHHHHHTTC--------------------SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHH
T ss_pred HcCcHHHHHHHHcC--------------------CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHH
Confidence 1233444444443 3444555555555444432 22222 345666677777788
Q ss_pred HHHHHHHHHHHHHH
Q 003409 362 FKIVVVEAIRSLCL 375 (822)
Q Consensus 362 ~k~~~v~aI~~la~ 375 (822)
.+..+..+++.++.
T Consensus 196 v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 196 IQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888888763
No 57
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.85 E-value=1.5e-05 Score=73.90 Aligned_cols=115 Identities=15% Similarity=0.141 Sum_probs=79.2
Q ss_pred hhhhhhhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhc
Q 003409 72 FFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIV 151 (822)
Q Consensus 72 f~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~ 151 (822)
...+.+++.++|..+|+...-.+..+. +.. +..|.+-|.|+++.+|..|+++|+++++++. .+.+.+++.
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~---~~~---~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a----~~~L~~~L~ 83 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMG---DEA---FEPLLESLSNEDWRIRGAAAWIIGNFQDERA----VEPLIKLLE 83 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCS---STT---HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHH----HHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhC---chH---HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHc
Confidence 344566788888888876665553332 222 3777788889999999999999999998665 445556667
Q ss_pred CCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 003409 152 DKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALL 202 (822)
Q Consensus 152 d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL 202 (822)
|+++.||..|+.++.++- .++ .++.+.+++.|.++.|...|...|
T Consensus 84 d~~~~VR~~A~~aL~~~~--~~~----a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 84 DDSGFVRSGAARSLEQIG--GER----VRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp HCCTHHHHHHHHHHHHHC--SHH----HHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHHhC--cHH----HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 899999999999998874 333 344555667788888888776654
No 58
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.81 E-value=0.0061 Score=58.63 Aligned_cols=207 Identities=13% Similarity=0.123 Sum_probs=131.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCCh----hHHHHHHHHHHHHHhcChHHHHHH
Q 003409 141 QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAA----LVQFHALALLHQIRQNDRLAVSKL 216 (822)
Q Consensus 141 ~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~----~V~~~al~lL~~i~~~d~~~i~~L 216 (822)
.+...+...|.|.-.-|+|+|+.-+.-+.+.+||+.+..+.++--++..+.. .-+..+++.+-.+++ .-+.++
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P---e~v~~v 108 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP---ELVKSM 108 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---HHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH---HHHHhh
Confidence 3556677778888899999999999999999999999888888877765443 234566777666655 566666
Q ss_pred HHHhc--CCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHH
Q 003409 217 VTSLT--RGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAIT 294 (822)
Q Consensus 217 i~~l~--~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~ 294 (822)
++.+. |. ...|-..+.+=-.+...+.. +|.....+.+-+...+.+.+..=-+.|.+.|-.+..+......+-
T Consensus 109 Vp~lfanyr-igd~kikIn~~yaLeeIara---nP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~Pf-- 182 (253)
T 2db0_A 109 IPVLFANYR-IGDEKTKINVSYALEEIAKA---NPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPF-- 182 (253)
T ss_dssp HHHHHHHSC-CCSHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGG--
T ss_pred HHHHHHHHh-cCCccceecHHHHHHHHHHh---ChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcc--
Confidence 66432 22 23444433332222222222 344444444444555555555555555555555543332222221
Q ss_pred HHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHHHHHHHhccC--CcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q 003409 295 VLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTG--NESSVDRLMKQITNFMSDIADEFKIVVVEAIRS 372 (822)
Q Consensus 295 ~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~--ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~ 372 (822)
|-++. .+|.|.|.-+|.-|.++|..++ |++ +..++....+-+.+.++.....+..+++.
T Consensus 183 -LprL~-----------------aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 183 -LPRII-----------------NLLHDGDEIVRASAVEALVHLATLNDK-LRKVVIKRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp -HHHHH-----------------GGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred -hHHHH-----------------HHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 11111 4688999999999999997654 555 77788777777778888888888888888
Q ss_pred HHH
Q 003409 373 LCL 375 (822)
Q Consensus 373 la~ 375 (822)
++.
T Consensus 244 l~l 246 (253)
T 2db0_A 244 LLL 246 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 59
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.79 E-value=0.00044 Score=66.40 Aligned_cols=183 Identities=18% Similarity=0.239 Sum_probs=139.1
Q ss_pred CcCCCCchhhHHHHHHHHhccCC--cchHHHHHHHHHHhhhhc-CHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhh
Q 003409 318 SLISDQNRSIATLAITTLLKTGN--ESSVDRLMKQITNFMSDI-ADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILRE 394 (822)
Q Consensus 318 ~lL~d~d~sIr~~aL~lL~~l~n--e~Nv~~Iv~eL~~y~~~~-~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~ 394 (822)
.+|+|+=-.+++-||.++..+.. ++=++.++++|...++.. .-..-.++.+++|.+|.--|+....++..+..-.+.
T Consensus 39 ~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfanyri 118 (253)
T 2db0_A 39 ELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRI 118 (253)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhc
Confidence 45677667899999999987643 466788889998876532 345678999999999999999888888888887774
Q ss_pred cCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCCchhHHHhhhee---cCCCCCCCCChHHHHHHHHhhccCCC
Q 003409 395 EGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHF---LGTEGPKTSDPSKYIRYIYNRVHLEN 471 (822)
Q Consensus 395 ~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~~~~~~~~i~wi---LGEy~~~~~~~~~~i~~i~~~~~~e~ 471 (822)
|+-..+=-+-.++-.|.+.||++-..+++.+...+.+.+.. =+.+++.+ +||.+.....| ++..++.-+...+
T Consensus 119 -gd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~-Dkl~aLnFi~alGen~~~yv~P--fLprL~aLL~D~d 194 (253)
T 2db0_A 119 -GDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNRE-DKLTALNFIEAMGENSFKYVNP--FLPRIINLLHDGD 194 (253)
T ss_dssp -CSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHH-HHHHHHHHHHTCCTTTHHHHGG--GHHHHHGGGGCSS
T ss_pred -CCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHhccCccccCc--chHHHHHHHcCcc
Confidence 56556666778899999999999999999998888865533 24444444 44444332222 3445555556678
Q ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHh
Q 003409 472 ATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCL 504 (822)
Q Consensus 472 ~~vr~~~ltal~K~~~~~~~~~~~i~~ll~~~~ 504 (822)
..||+.++.++.+++...|.+++-|..-++..-
T Consensus 195 eiVRaSaVEtL~~lA~~npklRkii~~kl~e~~ 227 (253)
T 2db0_A 195 EIVRASAVEALVHLATLNDKLRKVVIKRLEELN 227 (253)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCC
T ss_pred hhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhc
Confidence 999999999999999999999988888887763
No 60
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.67 E-value=0.0078 Score=67.92 Aligned_cols=101 Identities=15% Similarity=0.074 Sum_probs=75.3
Q ss_pred hhhHHhhcCCCCHHHHHHHHHHhcCCC--chh----hHH-HHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH---
Q 003409 108 TSSLMKDMTSKTDMYRANAIRVLCRIT--DGT----LLT-QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK--- 177 (822)
Q Consensus 108 iNsl~kDl~~~n~~vr~lALr~l~~I~--~~~----~~~-~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~--- 177 (822)
+..+.+-|.++++.++..|.++|.++. ++. +.+ ..++.+.++|.+.++.+++.|+-++..|...+++.-.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345566677788888888877777653 222 222 2577888899999999999999999999876665433
Q ss_pred --HHHHHHHHHhc-CCChhHHHHHHHHHHHHHhc
Q 003409 178 --RWSNEVQEAVQ-SRAALVQFHALALLHQIRQN 208 (822)
Q Consensus 178 --~~~~~l~~ll~-d~~~~V~~~al~lL~~i~~~ 208 (822)
..++.+.++|. +.++.++.+|..+|..+...
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC
Confidence 25677888888 77889999999999888765
No 61
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.62 E-value=0.004 Score=67.91 Aligned_cols=255 Identities=13% Similarity=0.079 Sum_probs=157.9
Q ss_pred cCCCCHHHHHHHHHHhcCCCchhhHHH------HHHHHHHhhc-----------CCCHHHHHHHHHHHHhhcccCh---h
Q 003409 115 MTSKTDMYRANAIRVLCRITDGTLLTQ------IERYLKQAIV-----------DKNPVVASAALVSGIHLLQTTP---E 174 (822)
Q Consensus 115 l~~~n~~vr~lALr~l~~I~~~~~~~~------l~~~v~~~l~-----------d~~p~VRk~A~la~~~l~~~~p---e 174 (822)
+-.+++...+.|+++|.+|...+-.+. .++.+.++|. +.++.+++.|+.++..|....+ .
T Consensus 41 ~~~~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~ 120 (354)
T 3nmw_A 41 MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 120 (354)
T ss_dssp CCCGGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 445566788899999998754332222 3455555552 1357899999999999986554 3
Q ss_pred HHH---HHHHHHHHHhcCCChhHHHHHHHHHHHHHhc-ChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCC
Q 003409 175 IVK---RWSNEVQEAVQSRAALVQFHALALLHQIRQN-DRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQT 250 (822)
Q Consensus 175 ~v~---~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~-d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~ 250 (822)
.+. ..++.+..+|.+.++.++.+|..+|..+... +.. .+..+.+ .|
T Consensus 121 ~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~k~~i~~--~G--------------------------- 170 (354)
T 3nmw_A 121 TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-SKKTLRE--VG--------------------------- 170 (354)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHH-HHHHHHH--TT---------------------------
T ss_pred HHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHH-HHHHHHH--CC---------------------------
Confidence 331 3588888999988899999998888777653 211 1111110 00
Q ss_pred CchhhHHHHHHH-hccCChhhHHHHHHHHhhccCCChHhH------hhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCC
Q 003409 251 GDRPFYDFLESC-LRHKAEMVIFEAARAITELNGVTNREL------TPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQ 323 (822)
Q Consensus 251 ~~~~l~~~l~~~-L~~~~~aV~~ea~~~i~~l~~~~~~~~------~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~ 323 (822)
.++.|-.+ +++.+..+.-.|+.++.++........ ..++..|..+|.++++. .
T Consensus 171 ----~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~----------------~ 230 (354)
T 3nmw_A 171 ----SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT----------------N 230 (354)
T ss_dssp ----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSS----------------S
T ss_pred ----CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCc----------------c
Confidence 12333333 344566777788888888864222211 23555666666543321 0
Q ss_pred chhhHHHHHHHHhccC-----CcchHHHHH-----HHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHH-----HHHHH
Q 003409 324 NRSIATLAITTLLKTG-----NESSVDRLM-----KQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRS-----LMNFL 388 (822)
Q Consensus 324 d~sIr~~aL~lL~~l~-----ne~Nv~~Iv-----~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~-----~v~~l 388 (822)
+..++..|.-+|..++ +++|...++ .-|...+.+-+.+.++.++.+|..|+...+..... .+..|
T Consensus 231 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~L 310 (354)
T 3nmw_A 231 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 310 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHH
Confidence 1135555555554443 556655543 56667777778889999999999998654443332 35567
Q ss_pred HHHHhhcCCcchHHHHHHHHHHHHHhCCchHH
Q 003409 389 SNILREEGGFEYKKAIVDSIVILIRDIPDAKE 420 (822)
Q Consensus 389 ~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~ 420 (822)
.++|+. ++..++..+...+..+....|+.+.
T Consensus 311 v~LL~s-~~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 311 KNLIHS-KHKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HTTTTC-SSHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHhC-CCHHHHHHHHHHHHHHHcCCHHHHh
Confidence 777764 4556777777888888887777654
No 62
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.57 E-value=0.035 Score=68.65 Aligned_cols=124 Identities=8% Similarity=0.061 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHhh-----cCCcchHHHHHHHHHHHHHhC-----C--------chHHHH
Q 003409 362 FKIVVVEAIRSLCLKFPLK-YRSLMNFLSNILRE-----EGGFEYKKAIVDSIVILIRDI-----P--------DAKENG 422 (822)
Q Consensus 362 ~k~~~v~aI~~la~k~~~~-~~~~v~~l~~lL~~-----~g~~~v~~~iv~~i~~iv~~~-----p--------~~~~~~ 422 (822)
.|..+...+..||.++++. ...++.++.+.|.. ..+...++.++..+..+..+- + ++....
T Consensus 377 ~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l 456 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF 456 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH
Confidence 5777888889999998842 33556666666652 223345677777777775421 1 233333
Q ss_pred HHHHHHHhhcC--CchhHHHhhheecCCCCCCCCChHHHH----HHHHhhccCCCHHHHHHHHHHHHHHhh
Q 003409 423 LLHLCEFIEDC--EFTYLSTQILHFLGTEGPKTSDPSKYI----RYIYNRVHLENATVRAAAVSTLAKFGA 487 (822)
Q Consensus 423 l~~L~~~l~~~--~~~~~~~~i~wiLGEy~~~~~~~~~~i----~~i~~~~~~e~~~vr~~~ltal~K~~~ 487 (822)
...+...+.+. .++-++.+++|.+|.|++... .+++ ..+.+.+..+++.||.++..|+..|..
T Consensus 457 ~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 44455556554 378889999999999988762 3344 445555555678999999999999876
No 63
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.54 E-value=0.00013 Score=67.50 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=81.4
Q ss_pred hhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHh
Q 003409 108 TSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAV 187 (822)
Q Consensus 108 iNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll 187 (822)
++.+.+-|+|+|+.+|..|+++|++++++. .+.+.+++.|++|.||..|+.++.++- .++. ++.+..++
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~--~~~a----~~~L~~~L 82 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQ--DERA----VEPLIKLL 82 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGC--SHHH----HHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcC--CHHH----HHHHHHHH
Confidence 456778899999999999999999999885 367788999999999999999998874 3443 44455666
Q ss_pred cCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHH
Q 003409 188 QSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIR 236 (822)
Q Consensus 188 ~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr 236 (822)
.|.++.|...|+..|..+. ++.++..|+..+. ..+++......+
T Consensus 83 ~d~~~~VR~~A~~aL~~~~--~~~a~~~L~~~l~---d~~~~vr~~A~~ 126 (131)
T 1te4_A 83 EDDSGFVRSGAARSLEQIG--GERVRAAMEKLAE---TGTGFARKVAVN 126 (131)
T ss_dssp HHCCTHHHHHHHHHHHHHC--SHHHHHHHHHHTT---SCCTHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhC--cHHHHHHHHHHHh---CCCHHHHHHHHH
Confidence 7889999999988888775 3466666666554 345665544443
No 64
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.52 E-value=0.0067 Score=74.96 Aligned_cols=127 Identities=14% Similarity=0.185 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHh---hcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcC--Cc
Q 003409 362 FKIVVVEAIRSLCLKFPL-KYRSLMNFLSNILR---EEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDC--EF 435 (822)
Q Consensus 362 ~k~~~v~aI~~la~k~~~-~~~~~v~~l~~lL~---~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~--~~ 435 (822)
||..+...+..++..++. ....+++++...+. ...+....+.++..+..+....++.....+..+...+... .+
T Consensus 423 ~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~ 502 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISN 502 (963)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCS
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCc
Confidence 466677777777776653 23344555555552 1223445666677777776654322112344455554333 36
Q ss_pred hhHHHhhheecCCCCCCCCChHHHHH----HHHhhccCCCHHHHHHHHHHHHHHhhccc
Q 003409 436 TYLSTQILHFLGTEGPKTSDPSKYIR----YIYNRVHLENATVRAAAVSTLAKFGAMVD 490 (822)
Q Consensus 436 ~~~~~~i~wiLGEy~~~~~~~~~~i~----~i~~~~~~e~~~vr~~~ltal~K~~~~~~ 490 (822)
+.++..++|++|.|++......+++. .+++.+ .++.|+..+..|+.+|+..++
T Consensus 503 ~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l--~~~~V~~~A~~al~~l~~~~~ 559 (963)
T 2x19_B 503 VQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL--GNPELSVSSVSTLKKICRECK 559 (963)
T ss_dssp HHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT--TCGGGHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHH
Confidence 77888899999999875432234443 344333 348899999999999987664
No 65
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.49 E-value=0.012 Score=71.19 Aligned_cols=272 Identities=14% Similarity=0.141 Sum_probs=134.8
Q ss_pred CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCC--------HHHHHHHHHHHHhhcc--cChhHHHHHHHHHHHH
Q 003409 117 SKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKN--------PVVASAALVSGIHLLQ--TTPEIVKRWSNEVQEA 186 (822)
Q Consensus 117 ~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~--------p~VRk~A~la~~~l~~--~~pe~v~~~~~~l~~l 186 (822)
+.++++|+-||-+|+-|....-- .....+...+.+.+ +.||..|++++--.+- .++++++.+.+ +
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~-~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~----~ 480 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGR-DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKE----V 480 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTH-HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH----H
T ss_pred CCcHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHH----H
Confidence 67788888888887765433211 12333444443333 7788888888776653 34555544433 3
Q ss_pred hcCCChhHH-HHHH--HHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHh
Q 003409 187 VQSRAALVQ-FHAL--ALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCL 263 (822)
Q Consensus 187 l~d~~~~V~-~~al--~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L 263 (822)
+.+.+..+. ..|+ ++++ +-..+..++..|+..+... ....|..-..+-+-.-++ . +++..+.+++.| .
T Consensus 481 L~dd~~~~~~~AalALGli~-vGTgn~~ai~~LL~~~~e~-~~e~vrR~aalgLGll~~-g---~~e~~~~li~~L---~ 551 (963)
T 4ady_A 481 LYNDSATSGEAAALGMGLCM-LGTGKPEAIHDMFTYSQET-QHGNITRGLAVGLALINY-G---RQELADDLITKM---L 551 (963)
T ss_dssp HHTCCHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTT-T---CGGGGHHHHHHH---H
T ss_pred HhcCCHHHHHHHHHHHhhhh-cccCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHhhhC-C---ChHHHHHHHHHH---H
Confidence 444444332 2222 2221 1222345555555433211 222333222211111111 1 233333333322 2
Q ss_pred ccCChhhHHHHHHHHh-hc-cCCChHhHhhHHH-HHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHHHHHHHh--cc
Q 003409 264 RHKAEMVIFEAARAIT-EL-NGVTNRELTPAIT-VLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLL--KT 338 (822)
Q Consensus 264 ~~~~~aV~~ea~~~i~-~l-~~~~~~~~~~a~~-~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~--~l 338 (822)
.+.++.|.|.++-++. .. .... ..++. .|..+. +|++..+|+-|..-|- .+
T Consensus 552 ~~~dp~vRygaa~alglAyaGTGn----~~aIq~LL~~~~--------------------~d~~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 552 ASDESLLRYGGAFTIALAYAGTGN----NSAVKRLLHVAV--------------------SDSNDDVRRAAVIALGFVLL 607 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTTTSCC----HHHHHHHHHHHH--------------------HCSCHHHHHHHHHHHHHHTS
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHhc--------------------cCCcHHHHHHHHHHHHhhcc
Confidence 3455666666655442 11 1111 12222 222222 3344445555544443 24
Q ss_pred CCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCch
Q 003409 339 GNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDA 418 (822)
Q Consensus 339 ~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~ 418 (822)
++++.+.++++.|.+| -+...|.-+..++|.++.--| ....++.|..+..+..+ .|...++..+-.|...+.+.
T Consensus 608 g~~e~v~rlv~~L~~~---~d~~VR~gAalALGli~aGn~--~~~aid~L~~L~~D~d~-~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 608 RDYTTVPRIVQLLSKS---HNAHVRCGTAFALGIACAGKG--LQSAIDVLDPLTKDPVD-FVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp SSCSSHHHHTTTGGGC---SCHHHHHHHHHHHHHHTSSSC--CHHHHHHHHHHHTCSSH-HHHHHHHHHHHHHSTTCCTT
T ss_pred CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhccCCC--cHHHHHHHHHHccCCCH-HHHHHHHHHHHHHhcCCccc
Confidence 5565666666554443 467778888888887764433 24667777777765433 37777777777777655554
Q ss_pred ----HHHHHHHHHHHhhc
Q 003409 419 ----KENGLLHLCEFIED 432 (822)
Q Consensus 419 ----~~~~l~~L~~~l~~ 432 (822)
-...+++|..++.+
T Consensus 682 ~~~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 682 LNPQVADINKNFLSVITN 699 (963)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHhc
Confidence 34566777777754
No 66
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.44 E-value=0.0017 Score=66.50 Aligned_cols=168 Identities=14% Similarity=0.105 Sum_probs=83.3
Q ss_pred hhHHhhcCCCCHHHHHHHHHHhcCCCch------hhHHHHHHHHHHhhc-CCCHHHHHHHHHHHHhhcccCh----hHHH
Q 003409 109 SSLMKDMTSKTDMYRANAIRVLCRITDG------TLLTQIERYLKQAIV-DKNPVVASAALVSGIHLLQTTP----EIVK 177 (822)
Q Consensus 109 Nsl~kDl~~~n~~vr~lALr~l~~I~~~------~~~~~l~~~v~~~l~-d~~p~VRk~A~la~~~l~~~~p----e~v~ 177 (822)
.++...++|++...|-.|+..|+.+... .-...+.+.+++.+. |+++.||+.|+.|+..+...-. ..+.
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4455555555655555555555443211 112345555666663 6666666666666555443211 2333
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhc--CCCCCChhHHHHHHHHHHhhhhcccCCCC-----
Q 003409 178 RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLT--RGTVRSPLAQCLLIRYTTQVIREAATTQT----- 250 (822)
Q Consensus 178 ~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~--~~~~~~~w~~v~llr~l~~~~~~~~~d~~----- 250 (822)
.+++.+.+.+.|.++.|..+|..+|..+...-+ +..+++.+. .. ..+|......+..+...+... .|+
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~-~~~~~vr~~~l~~l~~~l~~~--~~~~~~~~ 172 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLS-NKNPSVKSETALFIARALTRT--QPTALNKK 172 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTC--CGGGCCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHc--CCCCccHH
Confidence 455555566666666666566555555544321 222222211 01 234444444455544432110 111
Q ss_pred CchhhHHHHHHHhccCChhhHHHHHHHHhhc
Q 003409 251 GDRPFYDFLESCLRHKAEMVIFEAARAITEL 281 (822)
Q Consensus 251 ~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l 281 (822)
.-..+++.|..+|...+..|.-.|..++..+
T Consensus 173 ~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l 203 (242)
T 2qk2_A 173 LLKLLTTSLVKTLNEPDPTVRDSSAEALGTL 203 (242)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 1134566777777777777777777777655
No 67
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.34 E-value=0.05 Score=61.24 Aligned_cols=298 Identities=12% Similarity=0.058 Sum_probs=171.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhhcccChhH---HH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHH-----
Q 003409 143 ERYLKQAIVDKNPVVASAALVSGIHLLQTTPEI---VK--RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLA----- 212 (822)
Q Consensus 143 ~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~---v~--~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~----- 212 (822)
++.+.+.|.+.++.++..|+.++.++...+++. +. ..++.+..+|.+.++.++..|...|..+...++..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 455677788889999999999999988665542 22 37888889999999999999999999988653321
Q ss_pred ----HHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCch----hhHHHHHHHhc--------c--------CCh
Q 003409 213 ----VSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDR----PFYDFLESCLR--------H--------KAE 268 (822)
Q Consensus 213 ----i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~----~l~~~l~~~L~--------~--------~~~ 268 (822)
+..|+.-+.. ..++-.+-.....+..+.. +++.+. -.++.|..+|. + ...
T Consensus 84 ~~G~i~~Lv~lL~~--~~~~~~~~~a~~aL~nLa~----~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~ 157 (457)
T 1xm9_A 84 RQNGIREAVSLLRR--TGNAEIQKQLTGLLWNLSS----TDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDP 157 (457)
T ss_dssp HTTCHHHHHHHHTT--CCCHHHHHHHHHHHHHHHT----SSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred HcCCHHHHHHHHhh--CCCHHHHHHHHHHHHHHhc----CHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccH
Confidence 2334444431 1234444444444544321 233333 24566667772 2 245
Q ss_pred hhHHHHHHHHhhccCCChHhHh------hHHHHHHHHhcC------CCchhH---HHHHHhhccC---------------
Q 003409 269 MVIFEAARAITELNGVTNRELT------PAITVLQLFLSS------SKPVLR---FAAVRTLNKS--------------- 318 (822)
Q Consensus 269 aV~~ea~~~i~~l~~~~~~~~~------~a~~~L~~~l~s------~~~n~r---y~aL~~l~~~--------------- 318 (822)
.|+..|+.++.++... +..+. .++..|..++.+ .+..++ ...|+.+...
T Consensus 158 ~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~ 236 (457)
T 1xm9_A 158 EVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccc
Confidence 6888999999999754 33221 466677777764 222222 2224444310
Q ss_pred ------------cCCCCchhhHHHHHHHHh--ccCCcchHH-----HHHHHHHHhhhhc-CHHHHHHHHHHHHHHHHhCc
Q 003409 319 ------------LISDQNRSIATLAITTLL--KTGNESSVD-----RLMKQITNFMSDI-ADEFKIVVVEAIRSLCLKFP 378 (822)
Q Consensus 319 ------------lL~d~d~sIr~~aL~lL~--~l~ne~Nv~-----~Iv~eL~~y~~~~-~~~~k~~~v~aI~~la~k~~ 378 (822)
++......++....++-. ...+...++ ..++.|...+... +++.++.++.++..||....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~ 316 (457)
T 1xm9_A 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG 316 (457)
T ss_dssp C----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSS
T ss_pred cccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcC
Confidence 000000000000000000 000111111 2344445555433 47888999999999986432
Q ss_pred cc---H-H------HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchH----HHHHHHHHHHhhcCCc-----hhHH
Q 003409 379 LK---Y-R------SLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAK----ENGLLHLCEFIEDCEF-----TYLS 439 (822)
Q Consensus 379 ~~---~-~------~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~----~~~l~~L~~~l~~~~~-----~~~~ 439 (822)
+. . + -.+..|+++|.. ++..++.++...+..+.. +++.+ ..++..|++.+...+. .++.
T Consensus 317 ~~~~~~~~~~v~~~~~l~~Lv~LL~~-~~~~v~~~A~~aL~nls~-~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~ 394 (457)
T 1xm9_A 317 LMSSGMSQLIGLKEKGLPQIARLLQS-GNSDVVRSGASLLSNMSR-HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394 (457)
T ss_dssp SHHHHHHHHHHTTSCCHHHHHHHTTC-SCHHHHHHHHHHHHHHHT-SGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred cchHHHHHHHHHHcCCchHHHHHHhC-CCHhHHHHHHHHHHHHhc-CHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHH
Confidence 21 1 1 235678888875 677788888888888765 45443 4567788888875432 3566
Q ss_pred HhhheecCCC
Q 003409 440 TQILHFLGTE 449 (822)
Q Consensus 440 ~~i~wiLGEy 449 (822)
..++|.++.-
T Consensus 395 ~~~l~~l~ni 404 (457)
T 1xm9_A 395 SSACYTVRNL 404 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6777777654
No 68
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.32 E-value=0.012 Score=66.35 Aligned_cols=236 Identities=13% Similarity=0.111 Sum_probs=140.0
Q ss_pred HHHHHHHHhcCCCchhhHHH------HHHHHHHhhc-----------CCCHHHHHHHHHHHHhhcccChh---HH---HH
Q 003409 122 YRANAIRVLCRITDGTLLTQ------IERYLKQAIV-----------DKNPVVASAALVSGIHLLQTTPE---IV---KR 178 (822)
Q Consensus 122 vr~lALr~l~~I~~~~~~~~------l~~~v~~~l~-----------d~~p~VRk~A~la~~~l~~~~pe---~v---~~ 178 (822)
..|.|+.+|.||...+-.+. .++.+.+++. +.++-+++.|+.++..|....++ .+ ..
T Consensus 164 ~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 164 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp TTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 45699999998875443333 4555666663 13578999999999999876542 33 13
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhc-ChH---H------HHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCC
Q 003409 179 WSNEVQEAVQSRAALVQFHALALLHQIRQN-DRL---A------VSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATT 248 (822)
Q Consensus 179 ~~~~l~~ll~d~~~~V~~~al~lL~~i~~~-d~~---~------i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d 248 (822)
.++.+..+|.+.++.++.+|..+|..+... +.. . +..|+.-+.. ..++-.+...++.+..+... .
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~--s~~~~v~~~A~~aL~nLs~~---~ 318 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE--VKKESTLKSVLSALWNLSAH---C 318 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTT--CCSHHHHHHHHHHHHHHHHH---C
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhc--CCCHHHHHHHHHHHHHHccC---C
Confidence 588888999988999999999999888763 321 1 2334443321 12333333344444433210 0
Q ss_pred CCC------chhhHHHHHHHhccCCh----hhHHHHHHHHhhccC---CChHhHhh-----HHHHHHHHhcCCCchhHHH
Q 003409 249 QTG------DRPFYDFLESCLRHKAE----MVIFEAARAITELNG---VTNRELTP-----AITVLQLFLSSSKPVLRFA 310 (822)
Q Consensus 249 ~~~------~~~l~~~l~~~L~~~~~----aV~~ea~~~i~~l~~---~~~~~~~~-----a~~~L~~~l~s~~~n~ry~ 310 (822)
++. ..-.+..|..+|++.+. .|.-+|+.++.++.. ..+..+.. ++..|.
T Consensus 319 ~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv------------- 385 (458)
T 3nmz_A 319 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL------------- 385 (458)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH-------------
T ss_pred HHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHH-------------
Confidence 111 11234556666665543 266667777666542 12221111 122222
Q ss_pred HHHhhccCcCCCCchhhHHHHHHHHhccC--CcchHHHHH-----HHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHH
Q 003409 311 AVRTLNKSLISDQNRSIATLAITTLLKTG--NESSVDRLM-----KQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYR 382 (822)
Q Consensus 311 aL~~l~~~lL~d~d~sIr~~aL~lL~~l~--ne~Nv~~Iv-----~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~ 382 (822)
.+|.+.+..+++.|...|..++ ++++...|+ .-|.+.+..-+...+..+..++..|+...|.+|+
T Consensus 386 -------~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky~ 457 (458)
T 3nmz_A 386 -------QHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457 (458)
T ss_dssp -------HHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC--
T ss_pred -------HHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhhhc
Confidence 3445556667777777777665 566766665 3455556666777888888888888887777764
No 69
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.30 E-value=0.0029 Score=64.68 Aligned_cols=166 Identities=16% Similarity=0.142 Sum_probs=119.2
Q ss_pred ChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcc-cCCccchhHHHHHHHHhCCC-C----cchhhhhhhHHhhc
Q 003409 42 DPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQ-SRDIGLRRMVYLMIKELSPS-A----DEVIIVTSSLMKDM 115 (822)
Q Consensus 42 ~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~-s~d~~lKrl~YL~l~~~~~~-~----~~~lLviNsl~kDl 115 (822)
+-+.+++++..|-.+......+...+...++..+.+++. .++..+++.+--.+..++.. . +.+-.++..+.+=+
T Consensus 28 ~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l 107 (242)
T 2qk2_A 28 KWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKF 107 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 444455557666666654223323344567777888885 88888888888777776642 1 23455778888889
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccC-hh-----HHHHHHHHHHHHhcC
Q 003409 116 TSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTT-PE-----IVKRWSNEVQEAVQS 189 (822)
Q Consensus 116 ~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~-pe-----~v~~~~~~l~~ll~d 189 (822)
.|+++.+|..|..+|..+....-.+.+.+.+...+.|++|.||..++-.+.++.... |+ .+..+++.+..++.|
T Consensus 108 ~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D 187 (242)
T 2qk2_A 108 KEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNE 187 (242)
T ss_dssp GCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcC
Confidence 999999998877776665444345778888999999999999999999988865433 43 456788899999999
Q ss_pred CChhHHHHHHHHHHHHHh
Q 003409 190 RAALVQFHALALLHQIRQ 207 (822)
Q Consensus 190 ~~~~V~~~al~lL~~i~~ 207 (822)
+++.|...|...+-.+..
T Consensus 188 ~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 188 PDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 999888777766665543
No 70
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.29 E-value=0.045 Score=63.31 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=62.9
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHhhcC-------CcchHHHHHHHHHHHHHhCC
Q 003409 348 MKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKY----RSLMNFLSNILREEG-------GFEYKKAIVDSIVILIRDIP 416 (822)
Q Consensus 348 v~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~----~~~v~~l~~lL~~~g-------~~~v~~~iv~~i~~iv~~~p 416 (822)
+.-|...+..-+.+.++.++.+++.|+. .+... ...+.-|+.+|.... ..++...+...+..|+..+|
T Consensus 357 lp~Lv~LL~s~~~~v~~~A~~aL~nLs~-~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~ 435 (584)
T 3l6x_A 357 LSAIADLLTNEHERVVKAASGALRNLAV-DARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL 435 (584)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhC-ChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCH
Confidence 4455566666677778888888888874 33322 234556777776431 23566667777777777766
Q ss_pred chHH-----HHHHHHHHHhhcC-CchhHHHhhheecCCCC
Q 003409 417 DAKE-----NGLLHLCEFIEDC-EFTYLSTQILHFLGTEG 450 (822)
Q Consensus 417 ~~~~-----~~l~~L~~~l~~~-~~~~~~~~i~wiLGEy~ 450 (822)
+.+. .++..|...+.+- ..+.+...++|+|....
T Consensus 436 ~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 436 EAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 5433 3577777777664 34556666666666543
No 71
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.24 E-value=0.18 Score=58.39 Aligned_cols=309 Identities=13% Similarity=0.036 Sum_probs=181.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhhcccChhH---H-H-HHHHHHHHHhcCCChhHHHHHHHHHHHHHhc-ChHHHHHH
Q 003409 143 ERYLKQAIVDKNPVVASAALVSGIHLLQTTPEI---V-K-RWSNEVQEAVQSRAALVQFHALALLHQIRQN-DRLAVSKL 216 (822)
Q Consensus 143 ~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~---v-~-~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~-d~~~i~~L 216 (822)
++.+.+.|.+.++-++..|+.++.++...+++. | + ..++.+..+|.+.++.|+.+|...|..|... +.. .+..
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~-nk~~ 128 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD-NKIA 128 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH-HHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH-HHHH
Confidence 566778888899999999999999988766543 2 2 3678888999999999999999998888763 221 1111
Q ss_pred HHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhcc-CChhhHHHHHHHHhhccCCCh---HhHhhH
Q 003409 217 VTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRH-KAEMVIFEAARAITELNGVTN---RELTPA 292 (822)
Q Consensus 217 i~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~-~~~aV~~ea~~~i~~l~~~~~---~~~~~a 292 (822)
+.. .| -+..|..+|++ .+..+.-.|+.++++|...+. .....+
T Consensus 129 I~~--~G-------------------------------aIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~a 175 (584)
T 3l6x_A 129 IKN--CD-------------------------------GVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHA 175 (584)
T ss_dssp HHH--TT-------------------------------HHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHT
T ss_pred HHH--cC-------------------------------CHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhcc
Confidence 111 01 13344444544 345567777888888864321 122334
Q ss_pred HHHHHHHhcCCCchhHHHHHH--hhcc-CcCCCCchhhHHHHHHHHhccCCc--chHHHHH------HHHHHhhhh----
Q 003409 293 ITVLQLFLSSSKPVLRFAAVR--TLNK-SLISDQNRSIATLAITTLLKTGNE--SSVDRLM------KQITNFMSD---- 357 (822)
Q Consensus 293 ~~~L~~~l~s~~~n~ry~aL~--~l~~-~lL~d~d~sIr~~aL~lL~~l~ne--~Nv~~Iv------~eL~~y~~~---- 357 (822)
+..|..++..+ +.+.. .... .....+|..++.-|..+|..++.. ++-..|+ .-|..|+..
T Consensus 176 lp~Lv~LL~~p-----~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~ 250 (584)
T 3l6x_A 176 LHALTDEVIIP-----HSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQ 250 (584)
T ss_dssp HHHHHHHTHHH-----HHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcc-----cccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcc
Confidence 45555544210 00000 0000 011234567888888888777643 2333333 345566653
Q ss_pred --cCHHHHHHHHHHHHHHHHhC----c---------------------ccH-----HHHHHHHHHHHhhcCCcchHHHHH
Q 003409 358 --IADEFKIVVVEAIRSLCLKF----P---------------------LKY-----RSLMNFLSNILREEGGFEYKKAIV 405 (822)
Q Consensus 358 --~~~~~k~~~v~aI~~la~k~----~---------------------~~~-----~~~v~~l~~lL~~~g~~~v~~~iv 405 (822)
.+...++.++-++..|+-+. | .-. ...+..++.+|.......+.+.++
T Consensus 251 ~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa 330 (584)
T 3l6x_A 251 KDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASA 330 (584)
T ss_dssp TCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHH
Confidence 34566777888888877441 1 111 134567788887655566777888
Q ss_pred HHHHHHHHhCC----c-----hHHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCChH----HHHHHHHhhccCC--
Q 003409 406 DSIVILIRDIP----D-----AKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPS----KYIRYIYNRVHLE-- 470 (822)
Q Consensus 406 ~~i~~iv~~~p----~-----~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~~----~~i~~i~~~~~~e-- 470 (822)
-++..+..... . .++.++..|.+.+... ..+++..++|.|+.-+....+-. ..+..+...+...
T Consensus 331 ~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~ 409 (584)
T 3l6x_A 331 GAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQ 409 (584)
T ss_dssp HHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSC
T ss_pred HHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcc
Confidence 88888865331 1 1256788888888754 45777788888877654333221 2233333333222
Q ss_pred ------CHHHHHHHHHHHHHHhhcccc
Q 003409 471 ------NATVRAAAVSTLAKFGAMVDA 491 (822)
Q Consensus 471 ------~~~vr~~~ltal~K~~~~~~~ 491 (822)
+..++..++.++..+....++
T Consensus 410 ~~~~~~s~~v~~~a~~tL~NL~a~~~~ 436 (584)
T 3l6x_A 410 NSSWNFSEDTVISILNTINEVIAENLE 436 (584)
T ss_dssp SGGGTCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cccccchHHHHHHHHHHHHHHhcCCHH
Confidence 356777777777777665544
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.16 E-value=0.0096 Score=71.86 Aligned_cols=240 Identities=13% Similarity=0.082 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhc--ccChhHHHHHHHHHHHHhcCCChhH-HH
Q 003409 120 DMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLL--QTTPEIVKRWSNEVQEAVQSRAALV-QF 196 (822)
Q Consensus 120 ~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~--~~~pe~v~~~~~~l~~ll~d~~~~V-~~ 196 (822)
+.+|.-|...|+-+.-..--+.+...+++.+.+.++.+|..|++++-.++ .-+.+.++.++..+.+ +.+..+ .+
T Consensus 451 ~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e---~~~e~vrR~ 527 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE---TQHGNITRG 527 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH---CSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc---cCcHHHHHH
Confidence 67775566688775333333455666777777888889999999987765 3567888877776554 323333 33
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHH-HHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHH
Q 003409 197 HALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCL-LIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAA 275 (822)
Q Consensus 197 ~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~-llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~ 275 (822)
.+++ |-.+...++.++..++..+.. ..+|+..-- .+=+-+.|... .....+-++|..+..+.+.-|.-.|+
T Consensus 528 aalg-LGll~~g~~e~~~~li~~L~~--~~dp~vRygaa~alglAyaGT-----Gn~~aIq~LL~~~~~d~~d~VRraAV 599 (963)
T 4ady_A 528 LAVG-LALINYGRQELADDLITKMLA--SDESLLRYGGAFTIALAYAGT-----GNNSAVKRLLHVAVSDSNDDVRRAAV 599 (963)
T ss_dssp HHHH-HHHHTTTCGGGGHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTS-----CCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHH-HHhhhCCChHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3332 333344444566666655431 123333211 11111223222 12233333555555555555554444
Q ss_pred HHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhh
Q 003409 276 RAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFM 355 (822)
Q Consensus 276 ~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~ 355 (822)
-.+-.+....+ ..+...+..+..+.++.+||.+ ...|-.++..+.-..+++-|..+.
T Consensus 600 iaLGlI~~g~~---e~v~rlv~~L~~~~d~~VR~gA--------------------alALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 600 IALGFVLLRDY---TTVPRIVQLLSKSHNAHVRCGT--------------------AFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHTSSSC---SSHHHHTTTGGGCSCHHHHHHH--------------------HHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHhhccCCH---HHHHHHHHHHHhcCCHHHHHHH--------------------HHHHHHhccCCCcHHHHHHHHHHc
Confidence 44433211011 1122233334444444444444 333333333333344455455555
Q ss_pred hhcCHHHHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHh
Q 003409 356 SDIADEFKIVVVEAIRSLCLKFP----LKYRSLMNFLSNILR 393 (822)
Q Consensus 356 ~~~~~~~k~~~v~aI~~la~k~~----~~~~~~v~~l~~lL~ 393 (822)
.|.++..|+.++.+++.+...-. +....++..|.+...
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHh
Confidence 55555555555555555543221 134445555555544
No 73
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.06 E-value=0.059 Score=60.65 Aligned_cols=57 Identities=14% Similarity=0.024 Sum_probs=35.4
Q ss_pred hHHHHHHHhccCChhhHHHHHHHHhhccCC-ChHhH-----hhHHHHHHHH-hcCCCchhHHHH
Q 003409 255 FYDFLESCLRHKAEMVIFEAARAITELNGV-TNREL-----TPAITVLQLF-LSSSKPVLRFAA 311 (822)
Q Consensus 255 l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~-~~~~~-----~~a~~~L~~~-l~s~~~n~ry~a 311 (822)
.++.|..+|++.+..|.-.|+.++.++... ...-+ ..++..|..+ +.+.++.++-.|
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A 307 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHH
Confidence 367777888888888999999998888532 22211 2355566664 444555555433
No 74
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.17 Score=59.89 Aligned_cols=194 Identities=16% Similarity=0.227 Sum_probs=116.8
Q ss_pred hHHHHHHHhccCChhhHHHHHHHHhhccCCChHhH-----hhHHHHHHHHhcCCCch---hHHHHHHhhcc---------
Q 003409 255 FYDFLESCLRHKAEMVIFEAARAITELNGVTNREL-----TPAITVLQLFLSSSKPV---LRFAAVRTLNK--------- 317 (822)
Q Consensus 255 l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~-----~~a~~~L~~~l~s~~~n---~ry~aL~~l~~--------- 317 (822)
.+..|..++.+.++.+.-.|++++.++... .+-+ ..++.+|..++.+.... .|..|.++|.+
T Consensus 458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~ 536 (778)
T 3opb_A 458 LISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL 536 (778)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH
Confidence 456677788888999999999999999643 3322 34566777777765443 67777766654
Q ss_pred ---------------CcCC-CCchh------------h-HHHHHHHHhccCCcc-h-----HHHHHH------HHHHhhh
Q 003409 318 ---------------SLIS-DQNRS------------I-ATLAITTLLKTGNES-S-----VDRLMK------QITNFMS 356 (822)
Q Consensus 318 ---------------~lL~-d~d~s------------I-r~~aL~lL~~l~ne~-N-----v~~Iv~------eL~~y~~ 356 (822)
.+|. +++.. . +..|+..|..++.-. | -..|++ .|.+++.
T Consensus 537 ~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~ 616 (778)
T 3opb_A 537 IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML 616 (778)
T ss_dssp HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG
T ss_pred HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh
Confidence 3344 22211 1 456666666665432 1 233554 4556777
Q ss_pred hcCHHHHHHHHHHHHHHHHhCccc------------HHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchH-----
Q 003409 357 DIADEFKIVVVEAIRSLCLKFPLK------------YRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAK----- 419 (822)
Q Consensus 357 ~~~~~~k~~~v~aI~~la~k~~~~------------~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~----- 419 (822)
+-+...|+.+...|+.|+. .|.. ....++.|+.++.. ++..++.++.-.+..+...+|...
T Consensus 617 s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts~~~~ia~~ll~ 694 (778)
T 3opb_A 617 DENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANIATTIPLIAKELLT 694 (778)
T ss_dssp CSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 7677889999999999884 2221 11237778888864 667777777766666655555431
Q ss_pred -HHHHHHHHHHhhcC-CchhHHHh---hheecCCCCC
Q 003409 420 -ENGLLHLCEFIEDC-EFTYLSTQ---ILHFLGTEGP 451 (822)
Q Consensus 420 -~~~l~~L~~~l~~~-~~~~~~~~---i~wiLGEy~~ 451 (822)
...+..+.+.+.+. +.++++.+ +++-+.+|++
T Consensus 695 ~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 695 KKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred ccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence 24555666666653 44555332 3455556553
No 75
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.98 E-value=0.025 Score=56.70 Aligned_cols=176 Identities=13% Similarity=0.098 Sum_probs=129.4
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChh-----HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhc---ChHH
Q 003409 141 QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPE-----IVKRWSNEVQEAVQSRAALVQFHALALLHQIRQN---DRLA 212 (822)
Q Consensus 141 ~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe-----~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~---d~~~ 212 (822)
.....+..++.++++-|+-+|+.++-++.+..|+ .++++++.+-.++.+.|--|..+|+-.|..+-.+ ++..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 3566678888999999999999999988877554 4567999999999999999999999888877655 3467
Q ss_pred HHHHHHHhc-CCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCC--hHhH
Q 003409 213 VSKLVTSLT-RGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVT--NREL 289 (822)
Q Consensus 213 i~~Li~~l~-~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~--~~~~ 289 (822)
+.++...+. -...+++....+....+..+-. ......+.+++.+++.+.+.-|--.+.+++..+.+.+ +...
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv-----~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~ 187 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVLSKLQP-----LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL 187 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCB-----SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhCcCCc-----ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence 888776543 1115678888888777777511 2236789999999999999999999999998886321 1222
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHHHHHHHhccCCc
Q 003409 290 TPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNE 341 (822)
Q Consensus 290 ~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~ne 341 (822)
.....=+. .+|+..|+.++.+||+.|..+.+.
T Consensus 188 ~~I~~eI~--------------------elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 188 TLILDEIP--------------------SLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp GGTTTTHH--------------------HHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHH--------------------HHHcCCCHHHHHHHHHHHHHHHcC
Confidence 22222222 356666888888888888877665
No 76
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.95 E-value=0.017 Score=71.44 Aligned_cols=139 Identities=13% Similarity=0.110 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhhc----CCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCC-
Q 003409 361 EFKIVVVEAIRSLCLKFPL-KYRSLMNFLSNILREE----GGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCE- 434 (822)
Q Consensus 361 ~~k~~~v~aI~~la~k~~~-~~~~~v~~l~~lL~~~----g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~- 434 (822)
++|..+...+..++..++. ....+++++...|... .+....+.++..+..+.+..++.....+..+.+.+....
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~ 515 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPY 515 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCc
Confidence 4778888888888888873 3345555555555431 344456777777777665443322233444444443322
Q ss_pred ---chhHHHhhheecCCCCCCCCC-h---HHHHHHHHhhccCCCHHHHHHHHHHHHHHhhccc-cchHHHHHHHHH
Q 003409 435 ---FTYLSTQILHFLGTEGPKTSD-P---SKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVD-ALKPRVFVLLRR 502 (822)
Q Consensus 435 ---~~~~~~~i~wiLGEy~~~~~~-~---~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~~-~~~~~i~~ll~~ 502 (822)
++.++..++|.+|.|++.... | ...+..+++.+ . +.|+.++..|+.+|...++ ++.+-+-.+++.
T Consensus 516 ~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l--~-~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~ 588 (971)
T 2x1g_F 516 EKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL--N-SSMSAQATLGLKELCRDCQLQLKPYADPLLNA 588 (971)
T ss_dssp TTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH--H-SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--C-hHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 677888899999999875433 2 23344555544 2 7789999999999987664 444444444433
No 77
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.93 Score=53.68 Aligned_cols=378 Identities=11% Similarity=0.155 Sum_probs=200.1
Q ss_pred hhHHhhc--CCCCHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHhh----c--CCCHHHHHHHHHHHHhhcccChhHHH
Q 003409 109 SSLMKDM--TSKTDMYRANAIRVLCRITD---GTLLTQIERYLKQAI----V--DKNPVVASAALVSGIHLLQTTPEIVK 177 (822)
Q Consensus 109 Nsl~kDl--~~~n~~vr~lALr~l~~I~~---~~~~~~l~~~v~~~l----~--d~~p~VRk~A~la~~~l~~~~pe~v~ 177 (822)
+-|.+++ ....+-+|+++|=.+++... .+.-+.+...+...+ . +.+|++ .|+-++--+||..|++..
T Consensus 171 ~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~--~~~~~l~~lfPi~p~~~s 248 (778)
T 3opb_A 171 RFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLS--IIVKTLSELYPSLTTLCS 248 (778)
T ss_dssp THHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHH--HHHHHHHHHTTTTHHHHH
T ss_pred hhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHH--HHHHHHHHHhcCCHHHHH
Confidence 3444555 35667899999887776532 234444555555444 2 466777 677777788999998765
Q ss_pred H------HHHHHHHHhcC-CChhHHHHHHHHHHHHHhcC--hHHH----HHHHHH-hc---------------C-CCCCC
Q 003409 178 R------WSNEVQEAVQS-RAALVQFHALALLHQIRQND--RLAV----SKLVTS-LT---------------R-GTVRS 227 (822)
Q Consensus 178 ~------~~~~l~~ll~d-~~~~V~~~al~lL~~i~~~d--~~~i----~~Li~~-l~---------------~-~~~~~ 227 (822)
. +.+.+.+.+.+ ++..+..+++.+|...|.+. |..+ ...+.+ +. | .+...
T Consensus 249 ~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~ 328 (778)
T 3opb_A 249 EIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLT 328 (778)
T ss_dssp HHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCT
T ss_pred HHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCC
Confidence 2 55555555533 44455566666776655441 1111 111111 10 0 00011
Q ss_pred hhHHHHHHHHHHhhhhcc---------------cCCCCCch------hhHHHHHHHhcc-CChhhHHHHHHHHhhccCCC
Q 003409 228 PLAQCLLIRYTTQVIREA---------------ATTQTGDR------PFYDFLESCLRH-KAEMVIFEAARAITELNGVT 285 (822)
Q Consensus 228 ~w~~v~llr~l~~~~~~~---------------~~d~~~~~------~l~~~l~~~L~~-~~~aV~~ea~~~i~~l~~~~ 285 (822)
.+....+.+.+.+++..+ ..+|+.++ .+++.|-.++++ ....+.|++..++.++.+..
T Consensus 329 ~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~ 408 (778)
T 3opb_A 329 CINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLP 408 (778)
T ss_dssp TCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCC
T ss_pred cCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCC
Confidence 122223333343333221 11333322 234556666664 56778999999998887543
Q ss_pred hHhH--hhHHHHHHHHhcCCCchh-----------HHHH--HHhhcc--------CcCCCCchhhHHHHHHHHhccCC-c
Q 003409 286 NREL--TPAITVLQLFLSSSKPVL-----------RFAA--VRTLNK--------SLISDQNRSIATLAITTLLKTGN-E 341 (822)
Q Consensus 286 ~~~~--~~a~~~L~~~l~s~~~n~-----------ry~a--L~~l~~--------~lL~d~d~sIr~~aL~lL~~l~n-e 341 (822)
+... .+-...|..|...+.|+. .+.. .+.+.. .+++.++..+|..|..+|+.++. .
T Consensus 409 ~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~ 488 (778)
T 3opb_A 409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSK 488 (778)
T ss_dssp CCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSG
T ss_pred cccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH
Confidence 3211 123344555554322210 0111 011111 45677888999999999998874 4
Q ss_pred chHHHHH-----HHHHHhhhhcCHH---HHHHHHHHHHHHHHh------Ccc-cHHHHHHHHHHHHhh-cCCcc------
Q 003409 342 SSVDRLM-----KQITNFMSDIADE---FKIVVVEAIRSLCLK------FPL-KYRSLMNFLSNILRE-EGGFE------ 399 (822)
Q Consensus 342 ~Nv~~Iv-----~eL~~y~~~~~~~---~k~~~v~aI~~la~k------~~~-~~~~~v~~l~~lL~~-~g~~~------ 399 (822)
+|...++ +-|..++..-+.. .|..+..++++|+.. |+. .....+..|+++|.. .+...
T Consensus 489 ~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~ 568 (778)
T 3opb_A 489 NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND 568 (778)
T ss_dssp GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---C
T ss_pred HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccc
Confidence 5555555 5677787665443 789999999999842 221 112678899999972 11100
Q ss_pred -----h-HHHHHHHHHHHHHhCC----chHHHHHH------HHHHHhhcCCchhHHHhhheecCCCCC-------C---C
Q 003409 400 -----Y-KKAIVDSIVILIRDIP----DAKENGLL------HLCEFIEDCEFTYLSTQILHFLGTEGP-------K---T 453 (822)
Q Consensus 400 -----v-~~~iv~~i~~iv~~~p----~~~~~~l~------~L~~~l~~~~~~~~~~~i~wiLGEy~~-------~---~ 453 (822)
. +-++.-++..+..... +.+..++. .|.+++.+ +...++++++|++.-... . .
T Consensus 569 ~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s-~n~~VrrAA~elI~NL~~~~e~i~~k~~~~ 647 (778)
T 3opb_A 569 EQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD-ENVPLQRSTLELISNMMSHPLTIAAKFFNL 647 (778)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHTSGGGTGGGTSCC
T ss_pred ccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHhh
Confidence 1 3466778888877431 34444443 44444433 345566666676543221 0 1
Q ss_pred CChH--HHHHHHHhhccCCCHHHHHHHHHHHHHHhhcc
Q 003409 454 SDPS--KYIRYIYNRVHLENATVRAAAVSTLAKFGAMV 489 (822)
Q Consensus 454 ~~~~--~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~ 489 (822)
.+|. +.+..+..-...++..+|.++..|++-+....
T Consensus 648 ~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~ 685 (778)
T 3opb_A 648 ENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI 685 (778)
T ss_dssp SSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred cCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 1232 23666666556789999999988888875433
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.033 Score=57.35 Aligned_cols=29 Identities=3% Similarity=-0.040 Sum_probs=19.9
Q ss_pred hhhHHHHHHHhccCChhhHHHHHHHHhhc
Q 003409 253 RPFYDFLESCLRHKAEMVIFEAARAITEL 281 (822)
Q Consensus 253 ~~l~~~l~~~L~~~~~aV~~ea~~~i~~l 281 (822)
..+++.|..++..++..|.-.|+.++..+
T Consensus 190 ~~iip~l~~~l~D~~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 190 DEVVPIVIQIVNDTQPAIRTIGFESFAIL 218 (249)
T ss_dssp TTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 34667777777777777777776666554
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.0087 Score=61.80 Aligned_cols=169 Identities=10% Similarity=0.115 Sum_probs=117.3
Q ss_pred CCCCchhhHHHHHHHHhc-cCC--------cchHHHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHhCc------ccHHH
Q 003409 320 ISDQNRSIATLAITTLLK-TGN--------ESSVDRLMKQITNFM-SDIADEFKIVVVEAIRSLCLKFP------LKYRS 383 (822)
Q Consensus 320 L~d~d~sIr~~aL~lL~~-l~n--------e~Nv~~Iv~eL~~y~-~~~~~~~k~~~v~aI~~la~k~~------~~~~~ 383 (822)
+.+++..-|+.|++-|.. +++ ..+...+++.|...+ .+.+...+...+.+++.+|.... +-...
T Consensus 25 l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ 104 (249)
T 2qk1_A 25 ITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL 104 (249)
T ss_dssp HTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 456677777888877777 642 345567888888888 68888899999999999998665 33344
Q ss_pred HHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCC-c----hHHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCCh--
Q 003409 384 LMNFLSNILREEGGFEYKKAIVDSIVILIRDIP-D----AKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDP-- 456 (822)
Q Consensus 384 ~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p-~----~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~-- 456 (822)
++..+++.+.+.. -.|.+.+...+..++...+ . .-+.++..|++.+.+- .+.++..++.+|+........+
T Consensus 105 llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~ 182 (249)
T 2qk1_A 105 VFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGYS 182 (249)
T ss_dssp HHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSH
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcch
Confidence 5556666666533 3477777788888887652 1 1335788888888654 5678877777777765544321
Q ss_pred -------HHHHHHHHhhccCCCHHHHHHHHHHHHHHhhccc
Q 003409 457 -------SKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVD 490 (822)
Q Consensus 457 -------~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~~ 490 (822)
..++..+.+-+...++.||.++..++++++...+
T Consensus 183 ~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 183 TLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp HHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 2344444555556789999999999998876554
No 80
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.64 E-value=0.012 Score=62.37 Aligned_cols=161 Identities=11% Similarity=0.108 Sum_probs=106.9
Q ss_pred hHhhHHHHHHHHhcCCCchhHHHHHHhhcc--C-cCCCCchhhHHHHHHHHhccCC--cchHHHHH-----HHHHHhhhh
Q 003409 288 ELTPAITVLQLFLSSSKPVLRFAAVRTLNK--S-LISDQNRSIATLAITTLLKTGN--ESSVDRLM-----KQITNFMSD 357 (822)
Q Consensus 288 ~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~--~-lL~d~d~sIr~~aL~lL~~l~n--e~Nv~~Iv-----~eL~~y~~~ 357 (822)
.+..|...|..++.+.++...+..+..+.. . +|.+++..+|..|...|-.++. +.+-+.++ .-|...+..
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 444556666666665443333332222222 4 7888888888888888877753 23333333 566666664
Q ss_pred -cCHHHHHHHHHHHHHHHHhCcccHHH-----HHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHH-----HHHHHH
Q 003409 358 -IADEFKIVVVEAIRSLCLKFPLKYRS-----LMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKE-----NGLLHL 426 (822)
Q Consensus 358 -~~~~~k~~~v~aI~~la~k~~~~~~~-----~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~-----~~l~~L 426 (822)
.+.++|+.++.+|+.++..+++.... .+..|+.+|.. ++..++..+...+..+....|+.++ .++..|
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~-~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence 47889999999999999877764332 45578888875 6777888888899999988887644 366788
Q ss_pred HHHhhcCCchhHHHhhheecCCCC
Q 003409 427 CEFIEDCEFTYLSTQILHFLGTEG 450 (822)
Q Consensus 427 ~~~l~~~~~~~~~~~i~wiLGEy~ 450 (822)
++.+... .++++..+++.||.-.
T Consensus 215 v~LL~~~-d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 215 VALVRTE-HSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHTSC-CSTHHHHHHHHHHHHH
T ss_pred HHHHcCC-ChhHHHHHHHHHHHHH
Confidence 8887653 4566666666666543
No 81
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.55 E-value=0.014 Score=61.92 Aligned_cols=135 Identities=15% Similarity=0.141 Sum_probs=64.0
Q ss_pred hhhhh-hcccCCccchhHHHHHHHHhCCCCcc---hhh---hhhhHHhhcC-CCCHHHHHHHHHHhcCCC--chhhHH--
Q 003409 73 FAVTK-LFQSRDIGLRRMVYLMIKELSPSADE---VII---VTSSLMKDMT-SKTDMYRANAIRVLCRIT--DGTLLT-- 140 (822)
Q Consensus 73 ~~v~k-l~~s~d~~lKrl~YL~l~~~~~~~~~---~lL---viNsl~kDl~-~~n~~vr~lALr~l~~I~--~~~~~~-- 140 (822)
+.+++ ++.+++..+|.-.--.+..++..++. .++ ++..|.+=|. ++++.+|..|+.+|++|. .+...+
T Consensus 84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~ 163 (296)
T 1xqr_A 84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQF 163 (296)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 33445 55565555555555555444433221 111 1122222222 234555666666665552 122111
Q ss_pred ---HHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003409 141 ---QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQSRAALVQFHALALLHQIRQ 207 (822)
Q Consensus 141 ---~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~-----~~~~~l~~ll~d~~~~V~~~al~lL~~i~~ 207 (822)
..++.+.+++.+.++-||++|+.++..+....++..+ .+++.+.++|.+.++.|+-+|+..|..|..
T Consensus 164 ~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 164 LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence 2344555555555666666666666555544443322 244555555555555555555555554443
No 82
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.49 E-value=0.12 Score=64.03 Aligned_cols=71 Identities=13% Similarity=-0.024 Sum_probs=46.1
Q ss_pred CCchhHHHhhheecCCCCCCCCChHHHHHHHHhhcc------CCCHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHH
Q 003409 433 CEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVH------LENATVRAAAVSTLAKFGAMVD-ALKPRVFVLLRRC 503 (822)
Q Consensus 433 ~~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i~~~~~------~e~~~vr~~~ltal~K~~~~~~-~~~~~i~~ll~~~ 503 (822)
..++.++...+|++|.|+......++++..+.+.+. ..++.||..+-.++.+|...++ .+.+-+..+++.+
T Consensus 506 ~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l 583 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAML 583 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHH
Confidence 356777888889999998876543345544444332 3456788888888888887664 4545445555544
No 83
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.39 E-value=0.93 Score=55.81 Aligned_cols=90 Identities=18% Similarity=0.253 Sum_probs=69.0
Q ss_pred cCCccchhHHHHHHHHhCCC--------C------cchhhhhhhHHhhcCCC---CHHHHHHHHHHhcCCCc---hhhHH
Q 003409 81 SRDIGLRRMVYLMIKELSPS--------A------DEVIIVTSSLMKDMTSK---TDMYRANAIRVLCRITD---GTLLT 140 (822)
Q Consensus 81 s~d~~lKrl~YL~l~~~~~~--------~------~~~lLviNsl~kDl~~~---n~~vr~lALr~l~~I~~---~~~~~ 140 (822)
+++-..|.-+++++..+++. . +..-+..+.+..+++++ +|.+|+-|+.+++++.. ++..+
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~ 495 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI 495 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH
Confidence 56777888888877776531 1 22223446666677777 99999999999998754 57888
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHhhcc
Q 003409 141 QIERYLKQAIVDKNPVVASAALVSGIHLLQ 170 (822)
Q Consensus 141 ~l~~~v~~~l~d~~p~VRk~A~la~~~l~~ 170 (822)
.+.+.+.+++.|.++-||..|+.|+.++..
T Consensus 496 ~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 496 ELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 899999999999999999999999998765
No 84
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.32 E-value=0.29 Score=53.08 Aligned_cols=212 Identities=14% Similarity=0.135 Sum_probs=129.7
Q ss_pred CCHHHHHHHHHHhcCCC--ch---hhH---HHHHHHHHHhhcCCCHHHHHHHHHHHHhhccc-Chh---HHH--HHHHHH
Q 003409 118 KTDMYRANAIRVLCRIT--DG---TLL---TQIERYLKQAIVDKNPVVASAALVSGIHLLQT-TPE---IVK--RWSNEV 183 (822)
Q Consensus 118 ~n~~vr~lALr~l~~I~--~~---~~~---~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~-~pe---~v~--~~~~~l 183 (822)
.++.+|-.|..+|.++. +. ..+ ...++.+.++|.+.++.|+..|+-++..|... +++ .+. ..++.+
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 35667766666666553 22 222 23588899999999999999999999888653 333 232 256667
Q ss_pred HHH-hcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHH
Q 003409 184 QEA-VQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESC 262 (822)
Q Consensus 184 ~~l-l~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~ 262 (822)
.++ +...++.++-+|+.+|..+....+..-..++. . .-.++.|..+
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~--~-------------------------------~Gai~~Lv~l 222 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICA--V-------------------------------DGALAFLVGT 222 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH--S-------------------------------TTHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHH--h-------------------------------cCcHHHHHHH
Confidence 775 44567778888888888776632111011110 0 0113444444
Q ss_pred hccCCh----hhHHHHHHHHhhccC---CChHhHhh-----HHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHH
Q 003409 263 LRHKAE----MVIFEAARAITELNG---VTNRELTP-----AITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATL 330 (822)
Q Consensus 263 L~~~~~----aV~~ea~~~i~~l~~---~~~~~~~~-----a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~ 330 (822)
|++.++ .|+-+|+.++.++.. ..+..+.. ++..|.. +|.+.+..+++.
T Consensus 223 L~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~--------------------lL~~~~~~v~~~ 282 (354)
T 3nmw_A 223 LTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ--------------------HLKSHSLTIVSN 282 (354)
T ss_dssp TTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHH--------------------HTTCSCHHHHHH
T ss_pred hccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHH--------------------HHcCCChHHHHH
Confidence 444332 367777777776642 12222211 2233333 344556678888
Q ss_pred HHHHHhccC--CcchHHHHH-----HHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHH
Q 003409 331 AITTLLKTG--NESSVDRLM-----KQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYR 382 (822)
Q Consensus 331 aL~lL~~l~--ne~Nv~~Iv-----~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~ 382 (822)
|.-.|..++ ++++...|+ .-|.+.+..-+...|..+..++..|+..-|.++.
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHh
Confidence 888887776 566776665 4566667777888999999999999987676544
No 85
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.31 E-value=0.13 Score=64.17 Aligned_cols=129 Identities=12% Similarity=0.056 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHhh-cCCcchHHHHHHHHHHHHHhCCchHH-HHHHHHHHHhhc-CC---
Q 003409 362 FKIVVVEAIRSLCLKFPLK-YRSLMNFLSNILRE-EGGFEYKKAIVDSIVILIRDIPDAKE-NGLLHLCEFIED-CE--- 434 (822)
Q Consensus 362 ~k~~~v~aI~~la~k~~~~-~~~~v~~l~~lL~~-~g~~~v~~~iv~~i~~iv~~~p~~~~-~~l~~L~~~l~~-~~--- 434 (822)
++..+-..+..++..++.. ...+.+.+-+.+.. ..+....+.++..+..|.....+..+ ..+..+..++.. ++
T Consensus 429 ~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~ 508 (1049)
T 3m1i_C 429 LYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKR 508 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhc
Confidence 3445666677777776642 23444444444432 12233455566666655443322211 224444444432 11
Q ss_pred --chhH--HHhhheecCCCCCCCCChHHHHHHHHh----hccCCCHHHHHHHHHHHHHHhhccc
Q 003409 435 --FTYL--STQILHFLGTEGPKTSDPSKYIRYIYN----RVHLENATVRAAAVSTLAKFGAMVD 490 (822)
Q Consensus 435 --~~~~--~~~i~wiLGEy~~~~~~~~~~i~~i~~----~~~~e~~~vr~~~ltal~K~~~~~~ 490 (822)
++.. +..++|++|.|++......+++..+++ .+...++.||.++-.|+.+|+..++
T Consensus 509 ~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 509 GKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 2333 335889999998764433455554444 4444579999999999999998765
No 86
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.16 E-value=0.7 Score=53.38 Aligned_cols=138 Identities=16% Similarity=0.119 Sum_probs=101.6
Q ss_pred hcccCCccchhHHHHHHHHhCCCC-cc-----hhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchh--------------
Q 003409 78 LFQSRDIGLRRMVYLMIKELSPSA-DE-----VIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGT-------------- 137 (822)
Q Consensus 78 l~~s~d~~lKrl~YL~l~~~~~~~-~~-----~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~-------------- 137 (822)
+-.+.-.+-||=.-+.++.++... .+ +--.+++|++|-. +......+|-+|+++..++
T Consensus 30 l~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~--D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~ 107 (651)
T 3grl_A 30 VASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRS--DSEIIGYALDTLYNIISNDEEEEVEENSTRQSE 107 (651)
T ss_dssp HHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTT--CHHHHHHHHHHHHHHHCCC--------------
T ss_pred HhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccc--cHHHHHHHHHHHHHHhCCCCcccccccccccch
Confidence 445677888999999999999763 33 3467899999963 3344445888887643321
Q ss_pred -----hHHH------HHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHH-------HHHHHHHHhcCCChhHHHHHH
Q 003409 138 -----LLTQ------IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKR-------WSNEVQEAVQSRAALVQFHAL 199 (822)
Q Consensus 138 -----~~~~------l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~-------~~~~l~~ll~d~~~~V~~~al 199 (822)
+++. -++.+..+|...+.|||-.|+-++--|....|+.+.+ -++.+.++|.|+.-.+.-.|+
T Consensus 108 ~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneal 187 (651)
T 3grl_A 108 DLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGV 187 (651)
T ss_dssp CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHH
Confidence 1222 3556677888899999999999999998888886553 456788899988778888899
Q ss_pred HHHHHHHhcChHHHHHHHH
Q 003409 200 ALLHQIRQNDRLAVSKLVT 218 (822)
Q Consensus 200 ~lL~~i~~~d~~~i~~Li~ 218 (822)
.+|.++.+++ ..++|++.
T Consensus 188 lLL~~Lt~~n-~~iQklVA 205 (651)
T 3grl_A 188 LLLQALTRSN-GAIQKIVA 205 (651)
T ss_dssp HHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHhcCC-HHHHHHHH
Confidence 9999998876 45777665
No 87
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.24 Score=51.52 Aligned_cols=131 Identities=13% Similarity=0.052 Sum_probs=77.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhhcccChhHHH---------HHHHHHHHHhcCCChhHHHHHHHHHHHHHhcCh------
Q 003409 146 LKQAIVDKNPVVASAALVSGIHLLQTTPEIVK---------RWSNEVQEAVQSRAALVQFHALALLHQIRQNDR------ 210 (822)
Q Consensus 146 v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~---------~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~------ 210 (822)
+..-|.|++.-.|+.|+-.+.+++...+.... +....+...+.|.|..|+..++.++..+...-.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 55789999999999999999998876553321 233455677889999999888888776654211
Q ss_pred H----HHHHHHHHhc---CCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhc
Q 003409 211 L----AVSKLVTSLT---RGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITEL 281 (822)
Q Consensus 211 ~----~i~~Li~~l~---~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l 281 (822)
. .+..+++.+. .+ ..-+-..-..+..+..+... ......+++.+...+.++|+-|.-+|+..+..+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~-~~k~~~~~~a~~~l~~~~~~----~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLT-SSRATTKTQSMSCILSLCGL----DTSITQSVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHT----SSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 1 1112222211 11 12222222222322222211 122345667777788888888888888877654
No 88
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.04 E-value=1.4 Score=55.56 Aligned_cols=117 Identities=8% Similarity=0.090 Sum_probs=65.7
Q ss_pred CccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCC-------CchhhHHHHHHHHHHhhcC---
Q 003409 83 DIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRI-------TDGTLLTQIERYLKQAIVD--- 152 (822)
Q Consensus 83 d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I-------~~~~~~~~l~~~v~~~l~d--- 152 (822)
|...|+-..-++.++...++-...+.-.|. -.+.++.+|-.|+..|-+. .+++-.+.+-..+.+.+..
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~ 103 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTL 103 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSC
T ss_pred ChHHHHHHHHHHHHHHhCchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhcc
Confidence 556788888888665433333333333343 2466889998888666643 2344444455555555432
Q ss_pred ----CCHHHHHHHHHHHHhhcc-----cChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 003409 153 ----KNPVVASAALVSGIHLLQ-----TTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIR 206 (822)
Q Consensus 153 ----~~p~VRk~A~la~~~l~~-----~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~ 206 (822)
..++||.+++.++..+.+ .-|+.+..++ .++.. ++.....++..|..+.
T Consensus 104 ~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~----~~~~~-~~~~~e~~L~iL~~L~ 161 (1204)
T 3a6p_A 104 NILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELD----TLSKQ-GETQTELVMFILLRLA 161 (1204)
T ss_dssp CTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHH----HHHHT-CHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHH----HHhcC-CHHHHHHHHHHHHHHH
Confidence 469999999988876653 2345544443 33433 3333334555554443
No 89
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.62 E-value=0.011 Score=60.88 Aligned_cols=179 Identities=16% Similarity=0.181 Sum_probs=108.2
Q ss_pred cCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhH
Q 003409 115 MTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALV 194 (822)
Q Consensus 115 l~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V 194 (822)
+.|+++.+|..|.+.+. + ..+.+++.|.++.||..|+..+ .++ .+..++.|.++.|
T Consensus 59 l~d~~~~VR~~AA~~l~----~-------~~l~~L~~D~~~~VR~~aA~~L------~~~-------~L~~ll~D~d~~V 114 (244)
T 1lrv_A 59 LADPFWERRAIAVRYSP----V-------EALTPLIRDSDEVVRRAVAYRL------PRE-------QLSALMFDEDREV 114 (244)
T ss_dssp TTCSSHHHHHHHHTTSC----G-------GGGGGGTTCSSHHHHHHHHTTS------CSG-------GGGGTTTCSCHHH
T ss_pred hcCCCHHHHHHHHHhCC----H-------HHHHHHccCcCHHHHHHHHHHC------CHH-------HHHHHHcCCCHHH
Confidence 37888999988888652 2 2367778889999999888642 121 2446677888888
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHH
Q 003409 195 QFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEA 274 (822)
Q Consensus 195 ~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea 274 (822)
.+.+..-+ . .. ++..+. + .++++......+ +. .+ +.+..+++..++.|..++
T Consensus 115 R~~aA~~l---~---~~----~L~~L~-~-D~d~~VR~~aA~---~l------~~-------~~l~~l~~D~d~~VR~~a 166 (244)
T 1lrv_A 115 RITVADRL---P---LE----QLEQMA-A-DRDYLVRAYVVQ---RI------PP-------GRLFRFMRDEDRQVRKLV 166 (244)
T ss_dssp HHHHHHHS---C---TG----GGGGGT-T-CSSHHHHHHHHH---HS------CG-------GGGGGTTTCSCHHHHHHH
T ss_pred HHHHHHhC---C---HH----HHHHHH-c-CCCHHHHHHHHH---hc------CH-------HHHHHHHcCCCHHHHHHH
Confidence 77664421 1 11 111121 1 345555554433 11 01 123445566777788888
Q ss_pred HHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc----CcCCCCchhhHHHHHHHHhccCCcchHHHHHHH
Q 003409 275 ARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK----SLISDQNRSIATLAITTLLKTGNESSVDRLMKQ 350 (822)
Q Consensus 275 ~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~----~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~e 350 (822)
+.. + +. ..|..++..+++.+|..+...+.. .++.|++..||..+..-+- ...
T Consensus 167 a~~---l---~~-------~ll~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~l~-----------~~~ 222 (244)
T 1lrv_A 167 AKR---L---PE-------ESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHAS-----------LEA 222 (244)
T ss_dssp HHH---S---CG-------GGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHSC-----------HHH
T ss_pred HHc---C---CH-------HHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHcCC-----------HHH
Confidence 776 2 11 234457777888888888877655 5678888888887777641 233
Q ss_pred HHHhhhhcCHHHHHHHHHHH
Q 003409 351 ITNFMSDIADEFKIVVVEAI 370 (822)
Q Consensus 351 L~~y~~~~~~~~k~~~v~aI 370 (822)
|... .+.+..+|..+..++
T Consensus 223 L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 223 LREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp HHHC-CCCCHHHHHHHHCCC
T ss_pred HHHc-cCCCHHHHHHHHHHh
Confidence 3333 666677777666544
No 90
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=94.41 E-value=4.6 Score=49.48 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=38.6
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHhhcC-----CCHHHHHHHHHHHHhhcccCh
Q 003409 124 ANAIRVLCRITDGTLLTQIERYLKQAIVD-----KNPVVASAALVSGIHLLQTTP 173 (822)
Q Consensus 124 ~lALr~l~~I~~~~~~~~l~~~v~~~l~d-----~~p~VRk~A~la~~~l~~~~p 173 (822)
+-+|+.++.+....+.+.+.+.+.+.+.+ .++..|.+|+.|+..+.+..+
T Consensus 442 ~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~ 496 (971)
T 2x1g_F 442 SDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFG 496 (971)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcC
Confidence 34688889988888999999999988865 677788888888777765443
No 91
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.11 E-value=0.17 Score=52.74 Aligned_cols=94 Identities=13% Similarity=0.052 Sum_probs=44.6
Q ss_pred hhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCC---------chhhHHHHHHHHH
Q 003409 77 KLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRIT---------DGTLLTQIERYLK 147 (822)
Q Consensus 77 kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~---------~~~~~~~l~~~v~ 147 (822)
|++.+.+...|.-+.-.+..+++.....-.+...+..-+.++||.+|.-++.+|+++. ....+..+.+.+.
T Consensus 110 K~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~ 189 (278)
T 4ffb_C 110 KGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVP 189 (278)
T ss_dssp HTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHH
T ss_pred HHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHH
Confidence 3455555555544443333332221111112244444455666666666555554321 1223444555555
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcc
Q 003409 148 QAIVDKNPVVASAALVSGIHLLQ 170 (822)
Q Consensus 148 ~~l~d~~p~VRk~A~la~~~l~~ 170 (822)
+++.|+++-||..|.-++..+|+
T Consensus 190 k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 190 QLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHH
Confidence 66666666666666666555554
No 92
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=92.83 E-value=9.7 Score=41.31 Aligned_cols=235 Identities=12% Similarity=0.093 Sum_probs=140.9
Q ss_pred cchhhhhhhHHhhcCCCCHHHHHHHHHHhcCC---CchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHH
Q 003409 102 DEVIIVTSSLMKDMTSKTDMYRANAIRVLCRI---TDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKR 178 (822)
Q Consensus 102 ~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I---~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~ 178 (822)
+.+.=..|.-.. ..++ .+...|+-+-.+ .+|++++.+.+.|.....|++..|||-.+--+...+...++.+.+
T Consensus 25 ~~v~~lln~A~~---~~~~-~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~ 100 (386)
T 3o2t_A 25 ERVVDLLNQAAL---ITND-SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLK 100 (386)
T ss_dssp HHHHHHHHHHHH---CCST-HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHhhhc---cChH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445565555 2222 466666665554 678999999999999999999999999999888888899999999
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCC----CChhHHHHHHHHHHhhhhcccCCCCCchh
Q 003409 179 WSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTV----RSPLAQCLLIRYTTQVIREAATTQTGDRP 254 (822)
Q Consensus 179 ~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~----~~~w~~v~llr~l~~~~~~~~~d~~~~~~ 254 (822)
.++.+..++.|.++.|+-.++.....+- |.++..++.. +.. -.-|..+.-++
T Consensus 101 ~l~~L~~LL~d~d~~V~K~~I~~~tslY---pl~f~~i~~~---~~~~~~~e~~W~~m~~lK------------------ 156 (386)
T 3o2t_A 101 LIANLNMLLRDENVNVVKKAILTMTQLY---KVALQWMVKS---RVISELQEACWDMVSAMA------------------ 156 (386)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHHHHHHHHC----CCCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHHHHHhcC---CCcchhHHHHHHHHHHHH------------------
Confidence 9999999999999988766654433322 2444444431 101 12355443322
Q ss_pred hHHHHHHHhccCChhhHHHHHHHHhhc----cCCChHhH-hhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHH
Q 003409 255 FYDFLESCLRHKAEMVIFEAARAITEL----NGVTNREL-TPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIAT 329 (822)
Q Consensus 255 l~~~l~~~L~~~~~aV~~ea~~~i~~l----~~~~~~~~-~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~ 329 (822)
+.+...+.+.|.+|...|+|.+-.+ +..+..-. ... ...+.++ ..+...-+.++.
T Consensus 157 --~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~--------~~~d~SL----------~~VP~nHp~L~~ 216 (386)
T 3o2t_A 157 --GDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRR--------QEHDISL----------DRIPRDHPYIQY 216 (386)
T ss_dssp --HHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGG--------GTTSCCG----------GGSCTTCSSSCH
T ss_pred --HHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccc--------cCCCCCH----------hhCCCCCCcCCH
Confidence 2233345677889999998876432 10000000 000 0011111 122222233444
Q ss_pred HHHHHHhccCCcchHHHHHHHHHHhhhh--cCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Q 003409 330 LAITTLLKTGNESSVDRLMKQITNFMSD--IADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNIL 392 (822)
Q Consensus 330 ~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~--~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL 392 (822)
..|+- | ...+++.|+.++.+ +++-.-..++.+++.++.+=|.-...++..+..+-
T Consensus 217 ~~Le~------E--A~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~aL~~l~ 273 (386)
T 3o2t_A 217 NVLWE------E--GKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLH 273 (386)
T ss_dssp HHHHH------H--HHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHH
T ss_pred HHHHH------H--HHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhhc
Confidence 44332 2 44677777777653 34444556778888888887877777777776543
No 93
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.67 E-value=5.5 Score=48.64 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=35.1
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhh----cCCCHHHHHHHHHHHHhhccc
Q 003409 126 AIRVLCRITDGTLLTQIERYLKQAI----VDKNPVVASAALVSGIHLLQT 171 (822)
Q Consensus 126 ALr~l~~I~~~~~~~~l~~~v~~~l----~d~~p~VRk~A~la~~~l~~~ 171 (822)
.|+.++.+...++.+.+.+.+.+.+ .+.++..|-+|+.|+..+...
T Consensus 430 ~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~ 479 (963)
T 2x19_B 430 TLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAET 479 (963)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhh
Confidence 4677787777788888888888888 667778888888887766543
No 94
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.06 E-value=28 Score=42.53 Aligned_cols=227 Identities=16% Similarity=0.212 Sum_probs=138.6
Q ss_pred hhhhHHhhcCCCC-HHHHHHHHHHhcCCCc--hhhHH---HHHHHHHHhhcCCCHHHHHHHHHHHHhhcc-cChhHHHHH
Q 003409 107 VTSSLMKDMTSKT-DMYRANAIRVLCRITD--GTLLT---QIERYLKQAIVDKNPVVASAALVSGIHLLQ-TTPEIVKRW 179 (822)
Q Consensus 107 viNsl~kDl~~~n-~~vr~lALr~l~~I~~--~~~~~---~l~~~v~~~l~d~~p~VRk~A~la~~~l~~-~~pe~v~~~ 179 (822)
+...+.|-+.+++ +.--++++..||.-.. +.+-+ .+.+.+..++.|+.+-||++|-.|+.-++. .+|+.++..
T Consensus 55 ~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~ 134 (986)
T 2iw3_A 55 FFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKAL 134 (986)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4456666666653 3333456667774321 12222 356888899999999999998888777765 456778888
Q ss_pred HHHHHHHhcCCC-hhHHHHHHHHHHHHHhcChHHH----HHHHHHhc---CCCCCChhHH--HHHHHHHHhhhhcccCCC
Q 003409 180 SNEVQEAVQSRA-ALVQFHALALLHQIRQNDRLAV----SKLVTSLT---RGTVRSPLAQ--CLLIRYTTQVIREAATTQ 249 (822)
Q Consensus 180 ~~~l~~ll~d~~-~~V~~~al~lL~~i~~~d~~~i----~~Li~~l~---~~~~~~~w~~--v~llr~l~~~~~~~~~d~ 249 (822)
++.+.+.+.+.. =..-..|+.++-.+...-|..+ ..++|-+. |+ ...+... ...+.-++... +-
T Consensus 135 ~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d-~k~~v~~~~~~~~~~~~~~~-----~n 208 (986)
T 2iw3_A 135 LPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWD-TKKEVKAAATAAMTKATETV-----DN 208 (986)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHGGGC-----CC
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhccc-CcHHHHHHHHHHHHHHHhcC-----CC
Confidence 888888775443 3455567777777765545443 33455333 44 3333332 13333333322 33
Q ss_pred CCchhhHHHHHHHhccCChhhHHHHHHHHhhcc---CCChHhHhhHHHHHHHHhcCCCchhH-H--HHHHhhcc------
Q 003409 250 TGDRPFYDFLESCLRHKAEMVIFEAARAITELN---GVTNRELTPAITVLQLFLSSSKPVLR-F--AAVRTLNK------ 317 (822)
Q Consensus 250 ~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~---~~~~~~~~~a~~~L~~~l~s~~~n~r-y--~aL~~l~~------ 317 (822)
.+.+.+++.|-.++.+.+. +=||++.+..-+ ..+..-+...+..|.+=|..+...++ = +.+.+|.+
T Consensus 209 ~d~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~ 286 (986)
T 2iw3_A 209 KDIERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQ 286 (986)
T ss_dssp TTTGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHH
T ss_pred cchhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHH
Confidence 3457788888888877654 888888876543 22344455566777777776666653 2 23455555
Q ss_pred -----------------CcCCCCc-hhhHHHHHHHHhccCCc
Q 003409 318 -----------------SLISDQN-RSIATLAITTLLKTGNE 341 (822)
Q Consensus 318 -----------------~lL~d~d-~sIr~~aL~lL~~l~ne 341 (822)
.-..||. +.+..+|+++|.+.++.
T Consensus 287 ~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 287 VIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 1123443 67789999999877554
No 95
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=91.37 E-value=14 Score=45.52 Aligned_cols=105 Identities=16% Similarity=0.064 Sum_probs=71.0
Q ss_pred hhhhhhhHHhhcCC--CCHHHHHHHHHHhcCC---Cch----hhHHHHHHHHHHhhcC-----CCHHHHHHHHHHHHhh-
Q 003409 104 VIIVTSSLMKDMTS--KTDMYRANAIRVLCRI---TDG----TLLTQIERYLKQAIVD-----KNPVVASAALVSGIHL- 168 (822)
Q Consensus 104 ~lLviNsl~kDl~~--~n~~vr~lALr~l~~I---~~~----~~~~~l~~~v~~~l~d-----~~p~VRk~A~la~~~l- 168 (822)
.-...+.+.+-+.+ ++-..|=.|+=++++| ..+ ..+..+.+.+..++.+ .++.||..++.++-|.
T Consensus 449 ~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~ 528 (1023)
T 4hat_C 449 EEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYP 528 (1023)
T ss_dssp HHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHH
Confidence 33455666666665 3445554444444443 232 2556677777777763 5577888888877653
Q ss_pred --cccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhc
Q 003409 169 --LQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQN 208 (822)
Q Consensus 169 --~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~ 208 (822)
+..+|+.++..++.+-+.+.+.++.|+.+|...+..++..
T Consensus 529 ~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 529 RFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888888899999988888877764
No 96
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=90.65 E-value=0.22 Score=51.45 Aligned_cols=133 Identities=13% Similarity=0.074 Sum_probs=64.4
Q ss_pred HhHHHHHHHHHHHh-cCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCC-CcchhhhhhhHHhhcCCCCHHH
Q 003409 45 RCSQVITKLLYLLN-QGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-ADEVIIVTSSLMKDMTSKTDMY 122 (822)
Q Consensus 45 k~~~~l~kli~~~~-~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~-~~~~lLviNsl~kDl~~~n~~v 122 (822)
++-.++..++-.+. .|+.+.+.|+..+.+.++.=+..++-.+|.-+.-.+..+... +.. -+...+.+-+.|+|.-.
T Consensus 106 ~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~--~v~~~l~~g~ksKN~R~ 183 (266)
T 2of3_A 106 KVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL--KMTPMLLDALKSKNARQ 183 (266)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHccCCHHH
Confidence 44444544444333 356666666666666655444444444454444333222211 111 11122333445666666
Q ss_pred HHHHHHHhcCCCchhh--HHHHH---HHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHH
Q 003409 123 RANAIRVLCRITDGTL--LTQIE---RYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRW 179 (822)
Q Consensus 123 r~lALr~l~~I~~~~~--~~~l~---~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~ 179 (822)
|.-.|..+.++....= -.... +.|-+++.|+++.||.+|+.|+..+|+...|.+.+.
T Consensus 184 R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~ 245 (266)
T 2of3_A 184 RSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKA 245 (266)
T ss_dssp HHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6666655554321110 01123 566666666666666666666666665555555443
No 97
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=90.48 E-value=18 Score=41.78 Aligned_cols=180 Identities=10% Similarity=0.107 Sum_probs=103.9
Q ss_pred chhhhHHHHHhhhcCCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhh-hhcccCCcc---------chhHHHHH
Q 003409 24 IEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVT-KLFQSRDIG---------LRRMVYLM 93 (822)
Q Consensus 24 ~~k~~~lqE~r~f~~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~-kl~~s~d~~---------lKrl~YL~ 93 (822)
.|+++.+.++|.|...--..--.. .|.-+|..+-...+ ..|+........ .++...+.. ...+|--+
T Consensus 37 eDRR~Av~~Lk~~sk~y~~~Vg~~-~l~~li~~L~~d~~--D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~ 113 (651)
T 3grl_A 37 DDRRNAVRALKSLSKKYRLEVGIQ-AMEHLIHVLQTDRS--DSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQF 113 (651)
T ss_dssp HHHHHHHHHHHHTTTTTTTHHHHH-THHHHHHHHHSCTT--CHHHHHHHHHHHHHHHCCC--------------CHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHhhhh-hHHHHHHHHhcccc--cHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHH
Confidence 488888999998875422222222 37777777766531 112211111111 123222211 11222222
Q ss_pred HHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCC---chhhHHH------HHHHHHHhhcCCCHHHHHHHHHH
Q 003409 94 IKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRIT---DGTLLTQ------IERYLKQAIVDKNPVVASAALVS 164 (822)
Q Consensus 94 l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~---~~~~~~~------l~~~v~~~l~d~~p~VRk~A~la 164 (822)
.-.+....+.+-+.++- |.+.+.++|=.|++.|..+. ....-+. -++.+...|.|++..||-.|++.
T Consensus 114 ~d~f~~~~~~i~~Ll~l----L~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallL 189 (651)
T 3grl_A 114 TEIFIKQQENVTLLLSL----LEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLL 189 (651)
T ss_dssp HHHHHHSTHHHHHHHHH----TTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHH----hcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHH
Confidence 21111122223333333 46789999999988777664 2222222 45667888999999999999999
Q ss_pred HHhhcccChhHHH-----HHHHHHHHHhcCCC----hhHHHHHHHHHHHHHhcCh
Q 003409 165 GIHLLQTTPEIVK-----RWSNEVQEAVQSRA----ALVQFHALALLHQIRQNDR 210 (822)
Q Consensus 165 ~~~l~~~~pe~v~-----~~~~~l~~ll~d~~----~~V~~~al~lL~~i~~~d~ 210 (822)
+..|.+.++++=+ .-++.+-+++.... ..|+-.++.+++.+.+.++
T Consensus 190 L~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 190 LQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 9999999988532 23555656555433 3677788888888887765
No 98
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=89.32 E-value=7.2 Score=39.88 Aligned_cols=132 Identities=11% Similarity=0.028 Sum_probs=91.6
Q ss_pred HHHHHHHHhcC---CCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHH
Q 003409 122 YRANAIRVLCR---ITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHA 198 (822)
Q Consensus 122 vr~lALr~l~~---I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~a 198 (822)
.+...|+.+-. -.+|++.+.+.+.+.....|++.-|||-.+-=+...++..+++..+.++.+..++.|.++.|.=.+
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~ 110 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRV 110 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 55555544333 357899999999999998999999999998888889999999999999999999999999887766
Q ss_pred HHHHHHHHhcChHHHHHHHHHhcCCCCC-----ChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHH
Q 003409 199 LALLHQIRQNDRLAVSKLVTSLTRGTVR-----SPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFE 273 (822)
Q Consensus 199 l~lL~~i~~~d~~~i~~Li~~l~~~~~~-----~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~e 273 (822)
+.....+-+ ..+.+++. .+ .. .-|..+.-+| +.+...+.+.|.+|...
T Consensus 111 I~~~~~iY~---~~l~~i~~---~~-~~~~~~~~~W~~m~~lK--------------------~~Il~~~~s~n~gvkl~ 163 (257)
T 3gs3_A 111 IQACGSIYK---NGLQYLCS---LM-EPGDSAEQAWNILSLIK--------------------AQILDMIDNENDGIRTN 163 (257)
T ss_dssp HHHHHHHHH---HHHHHHTT---SS-SCCHHHHHHHHHHHHHH--------------------HHHHHGGGSSCHHHHHH
T ss_pred HHHHHHHHH---HHHHHHhc---CC-CCcchHHHHHHHHHHHH--------------------HHHHHHHccCCcchHHH
Confidence 554433322 33444332 11 11 2355443322 23334456778889998
Q ss_pred HHHHHhh
Q 003409 274 AARAITE 280 (822)
Q Consensus 274 a~~~i~~ 280 (822)
|+|.+-.
T Consensus 164 ~iKF~e~ 170 (257)
T 3gs3_A 164 AIKFLEG 170 (257)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887744
No 99
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=89.07 E-value=1.3 Score=44.68 Aligned_cols=136 Identities=12% Similarity=0.058 Sum_probs=79.8
Q ss_pred hhhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHHh-hcCCCCHHHH---HHHHHHhcCCCchhhHHHHHHHHHHhhc
Q 003409 76 TKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMK-DMTSKTDMYR---ANAIRVLCRITDGTLLTQIERYLKQAIV 151 (822)
Q Consensus 76 ~kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~k-Dl~~~n~~vr---~lALr~l~~I~~~~~~~~l~~~v~~~l~ 151 (822)
..|.+++.++.|-+.=-.+... ...++++ ..++. =-.+++=-|| +.|++-+|.-.+++ .+.+.+.+...
T Consensus 77 ~~L~~~~~deVR~~Av~lLg~~-~~~~~~L---~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---~~l~~~~~W~~ 149 (240)
T 3l9t_A 77 FLAYQSDVYQVRMYAVFLFGYL-SKDKEIL---IFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---KALPIIDEWLK 149 (240)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHT-TTSHHHH---HHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---TTHHHHHHHHH
T ss_pred HHHHhCcchHHHHHHHHHHHhc-cCcHHHH---HHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---HHHHHHHHHhc
Confidence 3566777776665544444333 2222222 23332 1235565555 44555555422333 14456677888
Q ss_pred CCCHHHHHHHHHHHHh---h--cccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhc
Q 003409 152 DKNPVVASAALVSGIH---L--LQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLT 221 (822)
Q Consensus 152 d~~p~VRk~A~la~~~---l--~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~ 221 (822)
|.++-|||.|+.+... . ++.+|+.+- +.+..+..|++.-|+-+.-..|.++.+.+|..+...+....
T Consensus 150 d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll---~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~w~ 221 (240)
T 3l9t_A 150 SSNLHTRRAATEGLRIWTNRPYFKENPNEAI---RRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKNWK 221 (240)
T ss_dssp CSSHHHHHHHHHHTCSGGGSTTTTTCHHHHH---HHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHhhHHHhccchhhcCHHHHH---HHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhh
Confidence 9999999999888632 1 235565544 44445667777767655555788888988888888888653
No 100
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=89.04 E-value=9.1 Score=47.40 Aligned_cols=218 Identities=11% Similarity=0.082 Sum_probs=108.5
Q ss_pred CchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHH
Q 003409 251 GDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATL 330 (822)
Q Consensus 251 ~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~ 330 (822)
....+.+.|...+. .++.+.-+|-..+-.+...+ .....+..+| -++.++++|+.|...+... |++
T Consensus 14 ~~~~l~~~l~~~~~-p~~~~r~~Ae~~L~~~~~~p-~~~~~l~~iL---~~s~~~~vr~~aa~~Lk~~--------i~~- 79 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQ-GSGVQQKQAQEILTKFQDNP-DAWQKADQIL---QFSTNPQSKFIALSILDKL--------ITR- 79 (1049)
T ss_dssp CHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHST-TGGGGHHHHH---HHCSCHHHHHHHHHHHHHH--------HHH-
T ss_pred cHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHhCc-hHHHHHHHHH---hhCCCHHHHHHHHHHHHHH--------HHh-
Confidence 33445555555443 34456666666665554322 2222333333 2356778888887665430 000
Q ss_pred HHHHHhccCCcchHHHHHHHHHHhhhhc---------CHHHHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHhhcCCcch
Q 003409 331 AITTLLKTGNESSVDRLMKQITNFMSDI---------ADEFKIVVVEAIRSLCLK-FPLKYRSLMNFLSNILREEGGFEY 400 (822)
Q Consensus 331 aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~---------~~~~k~~~v~aI~~la~k-~~~~~~~~v~~l~~lL~~~g~~~v 400 (822)
=....+++....|-+.|..++... +..+|..+...|+.++.+ ||..|..+++.++..+.. +...
T Consensus 80 ----~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~--~~~~ 153 (1049)
T 3m1i_C 80 ----KWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS--SVNV 153 (1049)
T ss_dssp ----TGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTT--CHHH
T ss_pred ----hCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHcc--ChHH
Confidence 001122333333333444443321 245788888999999887 788888899999988862 2212
Q ss_pred HHHHHHHHHHH---HHhC-Cc-------------hHH---HHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCCh----
Q 003409 401 KKAIVDSIVIL---IRDI-PD-------------AKE---NGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDP---- 456 (822)
Q Consensus 401 ~~~iv~~i~~i---v~~~-p~-------------~~~---~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~---- 456 (822)
.......+..+ +... ++ .+. .++..+...+++...++++..++-+++.|....+-+
T Consensus 154 ~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~ 233 (1049)
T 3m1i_C 154 CENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYE 233 (1049)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhh
Confidence 22222222222 2211 11 111 122233334444433444444443443333322211
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcc
Q 003409 457 SKYIRYIYNRVHLENATVRAAAVSTLAKFGAMV 489 (822)
Q Consensus 457 ~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~ 489 (822)
...+..+++.+. .++.+|..++.++..+..+.
T Consensus 234 ~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~ 265 (1049)
T 3m1i_C 234 TNILELLSTKFM-TSPDTRAITLKCLTEVSNLK 265 (1049)
T ss_dssp SSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCC
Confidence 124455554432 47889999999999988763
No 101
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=88.36 E-value=2.5 Score=42.73 Aligned_cols=106 Identities=12% Similarity=0.007 Sum_probs=78.9
Q ss_pred hhhhhhhHHhhcCCCCH--HHHHHHHHHhcCCCc--hh----hHH-HHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChh
Q 003409 104 VIIVTSSLMKDMTSKTD--MYRANAIRVLCRITD--GT----LLT-QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPE 174 (822)
Q Consensus 104 ~lLviNsl~kDl~~~n~--~vr~lALr~l~~I~~--~~----~~~-~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe 174 (822)
+-|.+-.+.+-|.++++ .++..|..++.++.. ++ +++ -.+|.+.++|.+.++.|+..|+-++..|-..+++
T Consensus 6 ~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred hhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 44666778888888888 777777777766542 22 222 2578899999999999999999999998766654
Q ss_pred H---HH--HHHHHHHHHhc-CCChhHHHHHHHHHHHHHhcC
Q 003409 175 I---VK--RWSNEVQEAVQ-SRAALVQFHALALLHQIRQND 209 (822)
Q Consensus 175 ~---v~--~~~~~l~~ll~-d~~~~V~~~al~lL~~i~~~d 209 (822)
- +. .-++.+..+|. ..+..++-+|.++|+.+...+
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~ 126 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh
Confidence 2 32 26777788886 467889999999999887653
No 102
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=87.54 E-value=20 Score=44.32 Aligned_cols=102 Identities=18% Similarity=0.098 Sum_probs=66.5
Q ss_pred hhhhHHhhcCCCC--HH---HHHHHHHHhcCCCch----hhHHHHHHHHHHhhcCC-----CHHHHHHHHHHHH---hhc
Q 003409 107 VTSSLMKDMTSKT--DM---YRANAIRVLCRITDG----TLLTQIERYLKQAIVDK-----NPVVASAALVSGI---HLL 169 (822)
Q Consensus 107 viNsl~kDl~~~n--~~---vr~lALr~l~~I~~~----~~~~~l~~~v~~~l~d~-----~p~VRk~A~la~~---~l~ 169 (822)
....+.+-+++++ -. --+.|+++|+.-..+ ..++.+++.+..+..++ .+-||...+..+- +-.
T Consensus 478 ~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl 557 (1073)
T 3gjx_A 478 MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFL 557 (1073)
T ss_dssp HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHH
Confidence 3455555555433 22 227788888543332 46777777777777665 3445554443433 334
Q ss_pred ccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhc
Q 003409 170 QTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQN 208 (822)
Q Consensus 170 ~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~ 208 (822)
..+|+.++..++.+-+-+.+.++.|+..|...+..|+..
T Consensus 558 ~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~ 596 (1073)
T 3gjx_A 558 RAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQK 596 (1073)
T ss_dssp HHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 568888888888888888899999999888777777654
No 103
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=87.29 E-value=26 Score=38.87 Aligned_cols=155 Identities=16% Similarity=0.115 Sum_probs=89.4
Q ss_pred HHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhh
Q 003409 277 AITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMS 356 (822)
Q Consensus 277 ~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~ 356 (822)
.|+.....+.+....|...+.+|... =|+++=.|+.++. ++..|.|..||+-|+.=|-.+|..+++.+|.+=|.+.+.
T Consensus 33 ~Il~~~kg~~k~K~LaaQ~I~kffk~-FP~l~~~Ai~a~l-DLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLq 110 (507)
T 3u0r_A 33 VILDGVKGGTKEKRLAAQFIPKFFKH-FPELADSAINAQL-DLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQ 110 (507)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHHHGGG-CGGGHHHHHHHHH-HHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHH-HHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHh
Confidence 33333333456666677777777663 4555555554321 566788888888888888888888888888888888877
Q ss_pred hcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhC------CchHHHHHHHHHHHh
Q 003409 357 DIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDI------PDAKENGLLHLCEFI 430 (822)
Q Consensus 357 ~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~------p~~~~~~l~~L~~~l 430 (822)
.-+..-...+=.++..+-...| ...+..++..+.. |+..+.+.++..|..-+... +|..++++..+.+.+
T Consensus 111 tdd~~E~~~V~~sL~sllk~Dp---k~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L 186 (507)
T 3u0r_A 111 TDDSAEFNLVNNALLSIFKMDA---KGTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVL 186 (507)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHhcCh---HHHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHh
Confidence 5554444445555555554433 2233333333332 33335555555554444332 244555555555666
Q ss_pred hcCCchh
Q 003409 431 EDCEFTY 437 (822)
Q Consensus 431 ~~~~~~~ 437 (822)
+|+...+
T Consensus 187 ~DVT~~E 193 (507)
T 3u0r_A 187 EDVTGEE 193 (507)
T ss_dssp TSCCHHH
T ss_pred ccccHHH
Confidence 6665433
No 104
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=87.25 E-value=20 Score=44.40 Aligned_cols=224 Identities=13% Similarity=0.130 Sum_probs=117.1
Q ss_pred HhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc------CcCCCCc-hhhHHHHHHH
Q 003409 262 CLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK------SLISDQN-RSIATLAITT 334 (822)
Q Consensus 262 ~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~------~lL~d~d-~sIr~~aL~l 334 (822)
.+.+.++...-+|-..+-.+...+ .-...+..+| -.+.++.+||.|+.++.. .-+.+.+ ..||..-++.
T Consensus 36 ~ly~p~~~~r~qA~~~L~q~q~sp-~aw~~~~~iL---~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~ 111 (1073)
T 3gjx_A 36 CLYHGEGAQQRMAQEVLTHLKEHP-DAWTRVDTIL---EFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGL 111 (1073)
T ss_dssp TTTCSSHHHHHHHHHHHHTSSCCS-CHHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHcCc-hHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHH
Confidence 334456667777777777776543 2222222222 235678899999887754 2233222 2455544444
Q ss_pred HhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Q 003409 335 LLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLK-FPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIR 413 (822)
Q Consensus 335 L~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k-~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~ 413 (822)
+...++..+ ..+.+..++..+...++.++.+ ||..|..+++.++.++... . ....-....+..+.+
T Consensus 112 l~~~~~~~~-----------~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~-~-~~~~~~L~IL~~L~E 178 (1073)
T 3gjx_A 112 IIKTSSDPT-----------CVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTS-E-SLCQNNMVILKLLSE 178 (1073)
T ss_dssp HHHHHTCGG-----------GGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHC-H-HHHHHHHHHHHHHHH
T ss_pred HHHHccCcc-----------ccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCCC-H-HHHHHHHHHHHHHHH
Confidence 443221100 0012355667777888888776 7777777777777776531 1 111111222222222
Q ss_pred hC--------Cch------------HHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCCh----HHHHHHHHhhccC
Q 003409 414 DI--------PDA------------KENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDP----SKYIRYIYNRVHL 469 (822)
Q Consensus 414 ~~--------p~~------------~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~----~~~i~~i~~~~~~ 469 (822)
.. +.. ...++..+...++....+++...++-.+|.|...++-. ..++..++-. .+
T Consensus 179 EV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~-~L 257 (1073)
T 3gjx_A 179 EVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYK-FL 257 (1073)
T ss_dssp HHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHH-TS
T ss_pred HHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHH-hc
Confidence 10 000 12234444455555555665555555666665554210 1245555322 25
Q ss_pred CCHHHHHHHHHHHHHHhhc-cccchHHHHHHHHHH
Q 003409 470 ENATVRAAAVSTLAKFGAM-VDALKPRVFVLLRRC 503 (822)
Q Consensus 470 e~~~vr~~~ltal~K~~~~-~~~~~~~i~~ll~~~ 503 (822)
.++.+|.+++.|+.-+..+ .++..+.+..+++..
T Consensus 258 ~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~ 292 (1073)
T 3gjx_A 258 NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLT 292 (1073)
T ss_dssp SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 6889999999999887764 344455565655443
No 105
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=87.18 E-value=1.5 Score=54.61 Aligned_cols=123 Identities=13% Similarity=0.130 Sum_probs=83.2
Q ss_pred CccchhHHHHHHHHhCC----C----Ccc-hhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHh---h
Q 003409 83 DIGLRRMVYLMIKELSP----S----ADE-VIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQA---I 150 (822)
Q Consensus 83 d~~lKrl~YL~l~~~~~----~----~~~-~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~---l 150 (822)
+..+++.++|++..+.. . +++ +--+.+.+.+-+...++.-+-++|++|+|++.++.++.+.+.+... -
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~~ 487 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKSL 487 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSCC
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhHHHHHHHhhcCccccc
Confidence 44567777887765543 1 223 3345566666777778888999999999999999888776665421 1
Q ss_pred cCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 003409 151 VDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIR 206 (822)
Q Consensus 151 ~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~ 206 (822)
.+...-||..|+.|+-++-...|+.++..+-.+..= ...++-+-..|+.+|.+.+
T Consensus 488 ~~~~~rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n-~~e~~EvRiaA~~~Lm~t~ 542 (1056)
T 1lsh_A 488 DEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLN-VAIKSELRIRSCIVFFESK 542 (1056)
T ss_dssp CCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHTC
T ss_pred cccchHHHHHHHHHHHHhhhhchHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHC
Confidence 223457999999999999888999888755443210 1235677777776665433
No 106
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=86.75 E-value=23 Score=43.48 Aligned_cols=89 Identities=10% Similarity=0.028 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCCCch------------hhHHHHHHHHHHhhc-----CCCHHHHHHHHHHHHhhc---ccChhHHHHH
Q 003409 120 DMYRANAIRVLCRITDG------------TLLTQIERYLKQAIV-----DKNPVVASAALVSGIHLL---QTTPEIVKRW 179 (822)
Q Consensus 120 ~~vr~lALr~l~~I~~~------------~~~~~l~~~v~~~l~-----d~~p~VRk~A~la~~~l~---~~~pe~v~~~ 179 (822)
=..+=.||.+|+.+... ...+.+.+.+.+.+. +.+|.||..++..+-|.. ..+|+.+...
T Consensus 457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~ 536 (980)
T 3ibv_A 457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPAL 536 (980)
T ss_dssp HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 36677788886665432 123356666666654 899999999999997754 4678888877
Q ss_pred HHHHHH--HhcCCChhHHHHHHHHHHHHHhc
Q 003409 180 SNEVQE--AVQSRAALVQFHALALLHQIRQN 208 (822)
Q Consensus 180 ~~~l~~--ll~d~~~~V~~~al~lL~~i~~~ 208 (822)
++.+.+ .+.++++.|+.+|..++..+++.
T Consensus 537 L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~ 567 (980)
T 3ibv_A 537 IEYFVGPRGIHNTNERVRPRAWYLFYRFVKS 567 (980)
T ss_dssp HHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHhccccccCCChhHHHHHHHHHHHHHHH
Confidence 777777 66677888998888888777664
No 107
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=86.02 E-value=0.58 Score=47.82 Aligned_cols=179 Identities=14% Similarity=0.080 Sum_probs=113.8
Q ss_pred hhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHH
Q 003409 77 KLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPV 156 (822)
Q Consensus 77 kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~ 156 (822)
.++++++...|+..--.+ ....+.+=++|+++.||..|...+.. ..+.+++.|+++.
T Consensus 57 ~ll~d~~~~VR~~AA~~l------------~~~~l~~L~~D~~~~VR~~aA~~L~~-----------~~L~~ll~D~d~~ 113 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS------------PVEALTPLIRDSDEVVRRAVAYRLPR-----------EQLSALMFDEDRE 113 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS------------CGGGGGGGTTCSSHHHHHHHHTTSCS-----------GGGGGTTTCSCHH
T ss_pred HHhcCCCHHHHHHHHHhC------------CHHHHHHHccCcCHHHHHHHHHHCCH-----------HHHHHHHcCCCHH
Confidence 355777777776554422 12346666789999999999987541 3477889999999
Q ss_pred HHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHH
Q 003409 157 VASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIR 236 (822)
Q Consensus 157 VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr 236 (822)
||..|+..+ .++. +..++.|.++.|...+..- +. +. ++..+.. ..++.....+.+
T Consensus 114 VR~~aA~~l------~~~~-------L~~L~~D~d~~VR~~aA~~---l~---~~----~l~~l~~--D~d~~VR~~aa~ 168 (244)
T 1lrv_A 114 VRITVADRL------PLEQ-------LEQMAADRDYLVRAYVVQR---IP---PG----RLFRFMR--DEDRQVRKLVAK 168 (244)
T ss_dssp HHHHHHHHS------CTGG-------GGGGTTCSSHHHHHHHHHH---SC---GG----GGGGTTT--CSCHHHHHHHHH
T ss_pred HHHHHHHhC------CHHH-------HHHHHcCCCHHHHHHHHHh---cC---HH----HHHHHHc--CCCHHHHHHHHH
Confidence 999988853 2222 3456788888888777541 11 11 1222221 234333333322
Q ss_pred HHHhhhhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhc
Q 003409 237 YTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLN 316 (822)
Q Consensus 237 ~l~~~~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~ 316 (822)
.. .+ +.+..+++..+.-|..+++..+ +. ..|..++..++..+|..+...+.
T Consensus 169 ---~l------~~-------~ll~~ll~D~d~~VR~aaa~~l------~~-------~~L~~Ll~D~d~~VR~~aa~~l~ 219 (244)
T 1lrv_A 169 ---RL------PE-------ESLGLMTQDPEPEVRRIVASRL------RG-------DDLLELLHDPDWTVRLAAVEHAS 219 (244)
T ss_dssp ---HS------CG-------GGGGGSTTCSSHHHHHHHHHHC------CG-------GGGGGGGGCSSHHHHHHHHHHSC
T ss_pred ---cC------CH-------HHHHHHHcCCCHHHHHHHHHhC------CH-------HHHHHHHcCCCHHHHHHHHHcCC
Confidence 11 01 2344566778888999988763 11 24666788888889999888876
Q ss_pred c----CcCCCCchhhHHHHHH
Q 003409 317 K----SLISDQNRSIATLAIT 333 (822)
Q Consensus 317 ~----~lL~d~d~sIr~~aL~ 333 (822)
. .+ .|++..||..+..
T Consensus 220 ~~~L~~L-~D~~~~VR~aa~~ 239 (244)
T 1lrv_A 220 LEALREL-DEPDPEVRLAIAG 239 (244)
T ss_dssp HHHHHHC-CCCCHHHHHHHHC
T ss_pred HHHHHHc-cCCCHHHHHHHHH
Confidence 5 45 8999889887754
No 108
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=85.94 E-value=0.85 Score=47.08 Aligned_cols=135 Identities=16% Similarity=0.066 Sum_probs=90.7
Q ss_pred cCCccchhHHHHHHHHhC----C----CC-cchhhhhhhHHhhcCCCCHHHHHHHHH---HhcCCCchhhHHHHHHHHHH
Q 003409 81 SRDIGLRRMVYLMIKELS----P----SA-DEVIIVTSSLMKDMTSKTDMYRANAIR---VLCRITDGTLLTQIERYLKQ 148 (822)
Q Consensus 81 s~d~~lKrl~YL~l~~~~----~----~~-~~~lLviNsl~kDl~~~n~~vr~lALr---~l~~I~~~~~~~~l~~~v~~ 148 (822)
++++.+=.-+.-++..+. + .. .++-.++..|.-=+-|+.+-+|-.+-. .|+.+..+ ..+.+++..
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~ 174 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLD 174 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHH
Confidence 456654444444443332 1 12 345666788888889999999987754 44444333 346777888
Q ss_pred hhcCCCHHHHHHHHHHHHhhcccChhHHHHHH---HHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHH
Q 003409 149 AIVDKNPVVASAALVSGIHLLQTTPEIVKRWS---NEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVT 218 (822)
Q Consensus 149 ~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~---~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~ 218 (822)
++.|+|+-+|--.+..+..+++.+.-.-.+.+ +.+..+++|+|+.|--+|+..+.++-.+-+..+.+.+.
T Consensus 175 g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg 247 (266)
T 2of3_A 175 ALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAG 247 (266)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHC
T ss_pred HHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 99999999999988887776653311113466 88999999999999999988887776654444555554
No 109
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=83.86 E-value=58 Score=36.13 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=50.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhc
Q 003409 144 RYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQN 208 (822)
Q Consensus 144 ~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~ 208 (822)
..|..+.. .++-.++-|+-=+.|.++..|++-++-++...++..|.|..|...|+.-|-.+|++
T Consensus 32 ~~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~ 95 (507)
T 3u0r_A 32 QVILDGVK-GGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG 95 (507)
T ss_dssp HHHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh
Confidence 33444433 46889999999999999999999999999999999999988888887666555543
No 110
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=80.92 E-value=10 Score=38.15 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=52.7
Q ss_pred CcCCCCch--hhHHHHHHHHhccC--CcchHHHHH-----HHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHH----
Q 003409 318 SLISDQNR--SIATLAITTLLKTG--NESSVDRLM-----KQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSL---- 384 (822)
Q Consensus 318 ~lL~d~d~--sIr~~aL~lL~~l~--ne~Nv~~Iv-----~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~---- 384 (822)
.+|..+|. .++..|...|..++ ++.|-..|. .-|..++..-+.+.+..++.+++.|+...+.....+
T Consensus 15 ~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~G 94 (233)
T 3tt9_A 15 SMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELN 94 (233)
T ss_dssp HTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 34555555 66666666666555 444555553 456677777677788888888888876544333222
Q ss_pred -HHHHHHHHhhcCCcchHHHHHHHHHHH
Q 003409 385 -MNFLSNILREEGGFEYKKAIVDSIVIL 411 (822)
Q Consensus 385 -v~~l~~lL~~~g~~~v~~~iv~~i~~i 411 (822)
+..|+++|+..++.++++.++..+..+
T Consensus 95 aI~~Lv~lL~~~~~~~~~e~a~~aL~nL 122 (233)
T 3tt9_A 95 GVPRLLQVLKQTRDLETKKQITGLLWNL 122 (233)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 334555554333344444444444443
No 111
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=80.40 E-value=1.2e+02 Score=37.54 Aligned_cols=140 Identities=9% Similarity=0.050 Sum_probs=93.9
Q ss_pred CCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhc----C--CcchHHHHHHHHHHHH
Q 003409 339 GNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREE----G--GFEYKKAIVDSIVILI 412 (822)
Q Consensus 339 ~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~----g--~~~v~~~iv~~i~~iv 412 (822)
|.++-+..+.+.|.+.+...+.+-+...++++|.+.. |. .++.+.++|... . ...+..+++.+++.+.
T Consensus 433 c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p~----~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~ 506 (1056)
T 1lsh_A 433 CPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--PN----SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIA 506 (1056)
T ss_dssp CCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--GG----GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGG
T ss_pred CCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--hh----HHHHHHHhhcCccccccccchHHHHHHHHHHHHhh
Confidence 5556677777777777777777778899999999885 33 466677777431 1 1234455666777766
Q ss_pred HhCCchHHHHHHHHHHHhh-cCCchhHHHhhheecCCCCCCCCChHHHHHHHHhhccC-CCHHHHHHHHHHHHHHhhcc-
Q 003409 413 RDIPDAKENGLLHLCEFIE-DCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHL-ENATVRAAAVSTLAKFGAMV- 489 (822)
Q Consensus 413 ~~~p~~~~~~l~~L~~~l~-~~~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i~~~~~~-e~~~vr~~~ltal~K~~~~~- 489 (822)
...|+.- -..|...+. ....++++.+++++|=+-.+ +...+..|.+.+.. .+..|+....+.+.-++...
T Consensus 507 ~~~p~~v---~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P----~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~ 579 (1056)
T 1lsh_A 507 KRDPRKV---QEIVLPIFLNVAIKSELRIRSCIVFFESKP----SVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN 579 (1056)
T ss_dssp GTCHHHH---HHHHHHHHHCTTSCHHHHHHHHHHHHHTCC----CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred hhchHHH---HHHHHHHhcCCCCChHHHHHHHHHHHHHCc----CHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCC
Confidence 6555433 333444443 44678999998888855333 35567777776665 48899999999998888754
Q ss_pred cc
Q 003409 490 DA 491 (822)
Q Consensus 490 ~~ 491 (822)
|.
T Consensus 580 P~ 581 (1056)
T 1lsh_A 580 PE 581 (1056)
T ss_dssp GG
T ss_pred cc
Confidence 53
No 112
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=78.96 E-value=6.7 Score=34.04 Aligned_cols=66 Identities=11% Similarity=0.048 Sum_probs=44.0
Q ss_pred ceEEEEEEeecCCCcccceeEEEEEecCCCCCceEEEeccCCCCCCCCCceEEEEEeeC--CCCCceeeeec
Q 003409 601 RHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKP--EGVPAVGKFSN 670 (822)
Q Consensus 601 ~~ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~ip~~~L~~~~~~~~~v~~~~~--~~~~~~~~f~~ 670 (822)
..+..++..+|.+ +.+|+|+.+.++..+- .+. ..+....++|++..+..+.+.-. ...-..+.|+|
T Consensus 20 ~~l~v~vsf~NPL-~~~L~~c~~~vEG~GL--~~~-~~~~~~~v~pg~~~~~~~~~~P~~~G~~~L~a~f~s 87 (102)
T 2xzz_A 20 QECEVQIVFKNPL-PVTLTNVVFRLEGSGL--QRP-KILNVGDIGGNETVTLRQSFVPVRPGPRQLIASLDS 87 (102)
T ss_dssp SCEEEEEEEECCS-SSCBCSEEEEEEETTT--EEE-EEEEECCBCTTCEEEEEEEECCCSCSSCCCEEEEEC
T ss_pred CeEEEEEEEECCC-CCcccCEEEEEECCCC--Ccc-eEEEcCcCCCCCEEEEEEEEecCcccceEEEEEEEC
Confidence 3566677778999 5589999999986643 333 55567889999886666655221 12235566655
No 113
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=77.40 E-value=41 Score=38.20 Aligned_cols=163 Identities=13% Similarity=0.102 Sum_probs=96.9
Q ss_pred hhhhHHhhcCCCCHHHHH---HHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHH
Q 003409 107 VTSSLMKDMTSKTDMYRA---NAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEV 183 (822)
Q Consensus 107 viNsl~kDl~~~n~~vr~---lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l 183 (822)
+...+.+++..+.=.+|- ++||-+..+... .+.+.+.+..+|.|.+.-||..||-++.-+. .|+.+...+..+
T Consensus 264 IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~~LL~iL 339 (800)
T 3oc3_A 264 IIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLDLVLEKC 339 (800)
T ss_dssp HHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHHHHHHHH
T ss_pred HHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHHHHHHHH
Confidence 334444566666667774 566666333332 6778888888888888889999988888877 566566555555
Q ss_pred HHHhcCCC--hhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcccCCCCCchhhHHHHHH
Q 003409 184 QEAVQSRA--ALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLES 261 (822)
Q Consensus 184 ~~ll~d~~--~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~~~d~~~~~~l~~~l~~ 261 (822)
-++|.+-| .....+.+.+|..++... +....+| .++..|-|
T Consensus 340 Wd~L~~LDDLSASTgSVMdLLAkL~s~p---------------------------------~~a~~dp----~LVPRL~P 382 (800)
T 3oc3_A 340 WKNIESEELISVSKTSNLSLLTKIYREN---------------------------------PELSIPP----ERLKDIFP 382 (800)
T ss_dssp HHHHHTCCSCCTTHHHHHHHHHHHHHHC---------------------------------TTCCCCS----GGGGGTGG
T ss_pred HHHhhhhcccchhhHHHHHHHHHHHcCC---------------------------------cccccCh----HHHHHHHh
Confidence 55544321 111222233333333321 0000022 66788889
Q ss_pred HhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhh
Q 003409 262 CLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTL 315 (822)
Q Consensus 262 ~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l 315 (822)
+++|+-++|...+.+++..+. ....+. -+.+.+|-.++..++=.+++..
T Consensus 383 FLRHtITSVR~AVL~TL~tfL--~~~~LR---LIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 383 CFTSPVPEVRTSILNMVKNLS--EESIDF---LVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp GGTCSSHHHHHHHHHHTTTCC--CHHHHH---HHHHHHHHCSCHHHHHHHHHHH
T ss_pred hhcCCcHHHHHHHHHHHHHHH--hhhHHH---HHHHHHHhCCcHHHHHHHHHHH
Confidence 999999999999999998885 222221 2334444445556655555544
No 114
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=75.71 E-value=39 Score=34.42 Aligned_cols=99 Identities=12% Similarity=0.172 Sum_probs=73.1
Q ss_pred HhhhcCCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCCCcchhhhhhhHH
Q 003409 33 ARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLM 112 (822)
Q Consensus 33 ~r~f~~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~~~~lLviNsl~ 112 (822)
+...+... +..|+.. |+++=-+...+++ . -...++..+..+...++..+||.+==|+-+.+ +
T Consensus 21 ln~A~~~~-~~~kl~~-L~qa~el~~~~dp--~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~-------------~ 82 (257)
T 3gs3_A 21 CNELVIAS-PSTKCEL-LAKVQETVLGSCA--E-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVC-------------K 82 (257)
T ss_dssp HHHHTTCC-HHHHHHH-HHHHHHHHTTTTG--G-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHH-------------H
T ss_pred HHHhhhcC-cHHHHHH-HHHHHHHHHccCH--h-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHH-------------H
Confidence 44444332 3577777 9998888888762 2 33566777777767788889998888884432 1
Q ss_pred hhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcc
Q 003409 113 KDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQ 170 (822)
Q Consensus 113 kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~ 170 (822)
..++++..+.+.+..++.|.+|.|-|+|+.|+..+|+
T Consensus 83 ---------------------~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 83 ---------------------VKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYK 119 (257)
T ss_dssp ---------------------HCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 1467888999999999999999999999999887775
No 115
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=75.59 E-value=6 Score=39.41 Aligned_cols=147 Identities=14% Similarity=0.047 Sum_probs=84.9
Q ss_pred hhhcccCCccchhHHHHHHHHhCCC-CcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCC--chhhHHHHHHHHHHhhcC
Q 003409 76 TKLFQSRDIGLRRMVYLMIKELSPS-ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRIT--DGTLLTQIERYLKQAIVD 152 (822)
Q Consensus 76 ~kl~~s~d~~lKrl~YL~l~~~~~~-~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~--~~~~~~~l~~~v~~~l~d 152 (822)
..|++++-++.+-++-+++...... .++.+-.+..+... .+.=+.+=++| ++++.+. .++ .+.+.+.+.+.|
T Consensus 61 ~~L~~s~~~E~r~la~~~l~~~~~~~~~~~l~~~~~~l~~-~~nWd~~D~~a-~~~~~~~~~~~~---~~~~~i~~W~~s 135 (220)
T 2b6c_A 61 EAYYQKTEREYQYVAIDLALQNVQRFSLEEVVAFKAYVPQ-KAWWDSVDAWR-KFFGSWVALHLT---ELPTIFALFYGA 135 (220)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHTGGGCCHHHHHHGGGGTTT-TCSHHHHHHHH-HHHHHHHHHSGG---GHHHHHHHHTTC
T ss_pred HHHHcCchhHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcc-CCcHHHHHHHH-HHHHHHHHHChH---HHHHHHHHHHcC
Confidence 4567787777777777777443322 33333223333332 12213444444 4444332 222 234567888999
Q ss_pred CCHHHHHHHHHHHHhhc-ccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHH
Q 003409 153 KNPVVASAALVSGIHLL-QTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQ 231 (822)
Q Consensus 153 ~~p~VRk~A~la~~~l~-~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~ 231 (822)
.++++||.|+.+.++-. ..+|+.+ +..+..++.|++.-|.-+.=-.|-++.+.+|..+...+. -. ..++|..
T Consensus 136 ~~~w~rR~ai~~~l~~~~~~~~~~~---~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl~-~~---~l~~~~~ 208 (220)
T 2b6c_A 136 ENFWNRRVALNLQLMLKEKTNQDLL---KKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELMK-EL---VLSPLAQ 208 (220)
T ss_dssp SSHHHHHHHHHTTTTCGGGCCHHHH---HHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH-HS---CCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHH---HHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHh-hc---cCCHHHH
Confidence 99999999999886443 2445444 333444677777766654444788888888888777773 22 3456764
Q ss_pred HHH
Q 003409 232 CLL 234 (822)
Q Consensus 232 v~l 234 (822)
=+-
T Consensus 209 r~A 211 (220)
T 2b6c_A 209 REG 211 (220)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 116
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=75.29 E-value=5.4 Score=40.13 Aligned_cols=153 Identities=14% Similarity=0.092 Sum_probs=87.2
Q ss_pred hhhhcccCCccchhHHHHHHHHhCC-CCcchhhhhhhHHhhcCCCCH-HHHHHHHHHhcCCC--chhhHHHHHHHHHHhh
Q 003409 75 VTKLFQSRDIGLRRMVYLMIKELSP-SADEVIIVTSSLMKDMTSKTD-MYRANAIRVLCRIT--DGTLLTQIERYLKQAI 150 (822)
Q Consensus 75 v~kl~~s~d~~lKrl~YL~l~~~~~-~~~~~lLviNsl~kDl~~~n~-~vr~lALr~l~~I~--~~~~~~~l~~~v~~~l 150 (822)
+-.|+++..++.+-++-.++..+.. ..++.+=.+..+... -.|= .+-++|-+.++.+. .|+ .+.+.+.+.+
T Consensus 66 ~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~~l~~--~~nWd~~D~~a~~~~g~~~~~~p~---~~~~~l~~W~ 140 (232)
T 3jxy_A 66 IRELWDLPEREFQAAALDIMQKYKKHINETHIPFLEELIVT--KSWWDSVDSIVPTFLGDIFLKHPE---LISAYIPKWI 140 (232)
T ss_dssp HHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHHHHHHHHTS--SCCHHHHHHHTTTHHHHHHHHCGG---GGGGTHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc--CCChHHHHHhhHHHHHHHHHHCHH---HHHHHHHHHh
Confidence 3456777766666666666643322 122221112223222 2232 33444433333321 222 1335577888
Q ss_pred cCCCHHHHHHHHHHHHhhcc-cChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChh
Q 003409 151 VDKNPVVASAALVSGIHLLQ-TTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPL 229 (822)
Q Consensus 151 ~d~~p~VRk~A~la~~~l~~-~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w 229 (822)
.|.++++||.|+.+.+..+. ..|+. .+..+..++.|.+.-|+-+.=-.|-++...+|..+...+..- ..++|
T Consensus 141 ~s~~~w~rR~ai~~~l~~~~~~d~~~---~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~~~----~l~~~ 213 (232)
T 3jxy_A 141 ASDNIWLQRAAILFQLKYKQKMDEEL---LFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNN----ELAPL 213 (232)
T ss_dssp HSSCHHHHHHHHHTTTTCGGGCCHHH---HHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHHHS----CCCHH
T ss_pred cCCchHHHHHHHHHHHHHHhCCCHHH---HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHC----CCCHH
Confidence 89999999999998765443 34443 334455567777777765444478888888998888877753 24578
Q ss_pred HHHHHHHHHH
Q 003409 230 AQCLLIRYTT 239 (822)
Q Consensus 230 ~~v~llr~l~ 239 (822)
..=+-+|.+.
T Consensus 214 ~~r~A~k~l~ 223 (232)
T 3jxy_A 214 SKREAIKHIK 223 (232)
T ss_dssp HHHHHTTTTH
T ss_pred HHHHHHHhcc
Confidence 7665555543
No 117
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=73.32 E-value=74 Score=39.17 Aligned_cols=216 Identities=11% Similarity=0.132 Sum_probs=110.5
Q ss_pred hhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc------CcCCCCc-h
Q 003409 253 RPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK------SLISDQN-R 325 (822)
Q Consensus 253 ~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~------~lL~d~d-~ 325 (822)
..+-..+..... .++...-+|-..+-.+...+ .-...+..+| -.+.++++||.|+.++.. ..+.+.+ .
T Consensus 16 ~~Le~av~~ly~-p~~~~r~~A~~~L~~~q~sp-~aw~~~~~iL---~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~ 90 (1023)
T 4hat_C 16 ALLDQVVSTFYQ-GSGVQQKQAQEILTKFQDNP-DAWQKADQIL---QFSTNPQSKFIALSILDKLITRKWKLLPNDHRI 90 (1023)
T ss_dssp HHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHCT-TGGGGHHHHH---HHCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHH
T ss_pred HHHHHHHHHHhC-CChHHHHHHHHHHHHHHcCc-cHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHH
Confidence 344444444333 33446666666666565332 2233333333 245677899988877643 2333322 3
Q ss_pred hhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHhhcCCcchHHHH
Q 003409 326 SIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLK-FPLKYRSLMNFLSNILREEGGFEYKKAI 404 (822)
Q Consensus 326 sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k-~~~~~~~~v~~l~~lL~~~g~~~v~~~i 404 (822)
.||..-++.+...++... .+ + ...-++.++...++.++.+ ||..|..+++.++.+++. + .....-.
T Consensus 91 ~Ir~~Ll~~l~~~~~~~~---~i-------~-~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~-~-~~~~~~~ 157 (1023)
T 4hat_C 91 GIRNFVVGMIISMCQDDE---VF-------K-TQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS-S-VNVCENN 157 (1023)
T ss_dssp HHHHHHHHHHHHHHHSHH---HH-------H-HCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT-C-HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcc---cc-------c-ccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC-C-HHHHHHH
Confidence 455555554443211100 00 0 1234667788888888764 688888899998888863 2 1111211
Q ss_pred HHHHHHHHHh---C-----Cc-hH-----------HHHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCCh----HHHH
Q 003409 405 VDSIVILIRD---I-----PD-AK-----------ENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDP----SKYI 460 (822)
Q Consensus 405 v~~i~~iv~~---~-----p~-~~-----------~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~----~~~i 460 (822)
...+..+... . +. .+ ..++..+...+++...+++...++-++|.|...++-. ...+
T Consensus 158 L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll 237 (1023)
T 4hat_C 158 MIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNIL 237 (1023)
T ss_dssp HHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHH
Confidence 2222222221 1 00 11 1233333444555445555555555555554443210 1356
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHhh
Q 003409 461 RYIYNRVHLENATVRAAAVSTLAKFGA 487 (822)
Q Consensus 461 ~~i~~~~~~e~~~vr~~~ltal~K~~~ 487 (822)
..+++.+ +.++.+|.+++.|+.-+..
T Consensus 238 ~~l~~~~-L~~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 238 ELLSTKF-MTSPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HHHHTHH-HHSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHHHc
Confidence 6666443 3578899999999998876
No 118
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=71.16 E-value=7.4 Score=39.20 Aligned_cols=68 Identities=9% Similarity=-0.014 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHH----HhcCCC----chhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHH
Q 003409 116 TSKTDMYRANAIR----VLCRIT----DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEV 183 (822)
Q Consensus 116 ~~~n~~vr~lALr----~l~~I~----~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l 183 (822)
.|+|+..|-.|+- .|+... +..-.+.+...+...+.|.+.||+|+..=++-.+...+|+.+++++...
T Consensus 118 ~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~al~~~ 193 (235)
T 1t06_A 118 ASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEKAVEIA 193 (235)
T ss_dssp HSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 4566666666665 444433 2334555566666666666666666666666666666666666655533
No 119
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=68.71 E-value=68 Score=36.50 Aligned_cols=131 Identities=14% Similarity=0.180 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCcch-HHHHHHHHHHHHHhCCch--HH
Q 003409 344 VDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEY-KKAIVDSIVILIRDIPDA--KE 420 (822)
Q Consensus 344 v~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~~v-~~~iv~~i~~iv~~~p~~--~~ 420 (822)
.+.+++-+..=+.+.|++.|..+..++.-++ .|.....+++.+++.|.+..+... ...+.+.+..+..-.+.. ..
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp 374 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPP 374 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCS
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccCh
Confidence 6777777777778889999999999998888 678889999999999986433222 233344444444422211 11
Q ss_pred HHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCChHHHHHHHHhhccCC-CHHHHHHHHHHH
Q 003409 421 NGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLE-NATVRAAAVSTL 482 (822)
Q Consensus 421 ~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i~~~~~~e-~~~vr~~~ltal 482 (822)
..+..|..|+... -+.++.+++-.+-.+. -.+.+|.++.++.+| ++.|+...+...
T Consensus 375 ~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL-----~~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 375 ERLKDIFPCFTSP-VPEVRTSILNMVKNLS-----EESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp GGGGGTGGGGTCS-SHHHHHHHHHHTTTCC-----CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCC-cHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 3455555565432 2455666655554444 367899999888765 777877666655
No 120
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=67.97 E-value=43 Score=33.58 Aligned_cols=122 Identities=11% Similarity=0.111 Sum_probs=61.9
Q ss_pred chhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHH-HhcCCCchhHHHHHHhhcc-------------
Q 003409 252 DRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQL-FLSSSKPVLRFAAVRTLNK------------- 317 (822)
Q Consensus 252 ~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~-~l~s~~~n~ry~aL~~l~~------------- 317 (822)
.+.++.+...+.++.+..|.+-|+.++..+ ... ..+...+.. |...+.=-+|+.+-..+..
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~----~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~ 143 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD----KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPI 143 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS----HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHH
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc----HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 356677777788888888998888887776 211 223333333 2221211234432222111
Q ss_pred --CcCCCCchhhHHHHHHHHhc----cCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCc
Q 003409 318 --SLISDQNRSIATLAITTLLK----TGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFP 378 (822)
Q Consensus 318 --~lL~d~d~sIr~~aL~lL~~----l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~ 378 (822)
....|+|.-+||.|++-+.- ..-..+-+.++.-|.....+.+.-+|..+-.++..++..+|
T Consensus 144 ~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 144 IDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp HHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 22355566666666665422 11234444555555555444444445555555555555444
No 121
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=63.37 E-value=39 Score=39.50 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=22.6
Q ss_pred hhhHHHHHHHhccCChhhHHHHHHHHhhccC
Q 003409 253 RPFYDFLESCLRHKAEMVIFEAARAITELNG 283 (822)
Q Consensus 253 ~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~ 283 (822)
..+.++|.. |++.++.+...|+.++..+-.
T Consensus 34 ~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~ 63 (684)
T 4gmo_A 34 DKILPVLKD-LKSPDAKSRTTAAGAIANIVQ 63 (684)
T ss_dssp HTTHHHHHH-HSSSCCSHHHHHHHHHHHHTT
T ss_pred hhHHHHHHH-cCCCCHHHHHHHHHHHHHHHc
Confidence 356666654 788888888889888888864
No 122
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=61.96 E-value=73 Score=39.97 Aligned_cols=127 Identities=11% Similarity=0.123 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHh---CC---chHH-----------
Q 003409 359 ADEFKIVVVEAIRSLCLK-FPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRD---IP---DAKE----------- 420 (822)
Q Consensus 359 ~~~~k~~~v~aI~~la~k-~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~---~p---~~~~----------- 420 (822)
+.-+|..+...|+.++.+ ||..|..+++.+++++.. +..........+..+... .. ..+.
T Consensus 109 ~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~--~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~ 186 (1204)
T 3a6p_A 109 ENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ--GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNM 186 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTH
T ss_pred cHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHH
Confidence 456777788888887764 577888888888888764 222233333444444321 10 1111
Q ss_pred -HHHHHHHHHhhcC------------------CchhHHHhhheecCCCCCCCC------ChHHHHHHHHhhccCCCHHHH
Q 003409 421 -NGLLHLCEFIEDC------------------EFTYLSTQILHFLGTEGPKTS------DPSKYIRYIYNRVHLENATVR 475 (822)
Q Consensus 421 -~~l~~L~~~l~~~------------------~~~~~~~~i~wiLGEy~~~~~------~~~~~i~~i~~~~~~e~~~vr 475 (822)
.++..+...+.+. ..+++...++-+++.|-..++ .....+..++.- +.++.+|
T Consensus 187 ~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~--l~~~~lr 264 (1204)
T 3a6p_A 187 ERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLL--LNEQELQ 264 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHG--GGCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHH--cCCHHHH
Confidence 1222222233221 112334444555555544322 112345555532 3467899
Q ss_pred HHHHHHHHHHhhcc
Q 003409 476 AAAVSTLAKFGAMV 489 (822)
Q Consensus 476 ~~~ltal~K~~~~~ 489 (822)
.+++.|+..+..+.
T Consensus 265 ~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 265 LGAAECLLIAVSRK 278 (1204)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999988765
No 123
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=60.45 E-value=26 Score=41.03 Aligned_cols=142 Identities=15% Similarity=0.076 Sum_probs=81.6
Q ss_pred hhhhcccCCccchhHHHHHHHHhCCCCcc--hhh----hhhhHHhhcCCCCHHHHHHHHHHhcCC---CchhhHHH----
Q 003409 75 VTKLFQSRDIGLRRMVYLMIKELSPSADE--VII----VTSSLMKDMTSKTDMYRANAIRVLCRI---TDGTLLTQ---- 141 (822)
Q Consensus 75 v~kl~~s~d~~lKrl~YL~l~~~~~~~~~--~lL----viNsl~kDl~~~n~~vr~lALr~l~~I---~~~~~~~~---- 141 (822)
+++.++|.|...|..+-.++++++..++. .++ +..-|.+=|.|+++.+|..|.-+|.++ .+++.+..
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~ 118 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRL 118 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHc
Confidence 45668999999999999999999965321 222 223344557899999998876666555 45565555
Q ss_pred -HHHHHHHhhcCCCH-------------HHHH--------HHHHHHHhhcccChhHHH-----HHHHHHHHHhcCC---C
Q 003409 142 -IERYLKQAIVDKNP-------------VVAS--------AALVSGIHLLQTTPEIVK-----RWSNEVQEAVQSR---A 191 (822)
Q Consensus 142 -l~~~v~~~l~d~~p-------------~VRk--------~A~la~~~l~~~~pe~v~-----~~~~~l~~ll~d~---~ 191 (822)
+.+++..++..... -.++ .++-++.-|...+.+.+. ..++.+...+.+. .
T Consensus 119 ~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~ 198 (684)
T 4gmo_A 119 DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAP 198 (684)
T ss_dssp THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSC
T ss_pred ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCc
Confidence 45555555432111 1111 122222333444444443 2333333333222 2
Q ss_pred hhHHHHHHHHHHHHHhcChHHHHHH
Q 003409 192 ALVQFHALALLHQIRQNDRLAVSKL 216 (822)
Q Consensus 192 ~~V~~~al~lL~~i~~~d~~~i~~L 216 (822)
..+..+|+..|+.+..+++..+..+
T Consensus 199 ~~v~~~a~~~L~~ls~dn~~~~~~i 223 (684)
T 4gmo_A 199 QDIYEEAISCLTTLSEDNLKVGQAI 223 (684)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHH
Confidence 3577788888888887766554443
No 124
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=50.48 E-value=1.3e+02 Score=26.74 Aligned_cols=69 Identities=12% Similarity=0.072 Sum_probs=40.3
Q ss_pred EEEEEEeecCCCcccceeEEEEEecCCCCCceEEEeccC-CCCCC--CCCceEEEEEeeCCCCCceeeeeceeeeEE
Q 003409 603 VVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPL-RSLPY--DSPGQIFGAFEKPEGVPAVGKFSNMLRFIV 676 (822)
Q Consensus 603 ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~ip~-~~L~~--~~~~~~~v~~~~~~~~~~~~~f~~~L~f~v 676 (822)
+++.....|+.+ +.++||.+++...-. ++.....|- ..|+| +...++.+.+..+...... .-..+.|.+
T Consensus 31 ~~i~~~~~N~s~-~~it~f~fqaAVPKs--~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~~~~lk--lR~klsY~~ 102 (122)
T 3zy7_A 31 TVITIQASNSTE-LDMTDFVFQAAVPKT--FQLQLLSPSSSVVPAFNTGTITQVIKVLNPQKQQLR--MRIKLTFNW 102 (122)
T ss_dssp EEEEEEEEECSS-SCBEEEEEEEECCTT--SEEEECCCSCSCBCGGGSCCEEEEEEEECTTCCCCC--EEEEEEEEE
T ss_pred EEEEEEEEECCC-CccccEEEEEEcCcc--cEEEecCCCCCccCCCCCCCEEEEEEEECCCCCCEE--EEEEEEEEE
Confidence 455555567774 479999999886544 777776554 36888 4444444555444322222 333445654
No 125
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=46.49 E-value=35 Score=41.68 Aligned_cols=117 Identities=8% Similarity=0.156 Sum_probs=86.0
Q ss_pred chhhhhhhhhhhcccCCccchhHHHHHHHHhCCC--CcchhhhhhhHHhhcCCCCHHHHHHHHHHhcC-----CCchhhH
Q 003409 67 EATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS--ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCR-----ITDGTLL 139 (822)
Q Consensus 67 e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~--~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~-----I~~~~~~ 139 (822)
.+..+++.++..|-....++|+-+|-.+..++.. +.++-=.+..|.+=+.+|++ ..-+++.|+. -.+.-.+
T Consensus 172 ~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l 249 (986)
T 2iw3_A 172 RMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL 249 (986)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH
T ss_pred hccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH
Confidence 3456788888899999999999999988777653 45555556777777888876 3444666665 3455566
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHhhcc--cChhHHHHHHHHHHH
Q 003409 140 TQIERYLKQAIVDKNPVVASAALVSGIHLLQ--TTPEIVKRWSNEVQE 185 (822)
Q Consensus 140 ~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~--~~pe~v~~~~~~l~~ 185 (822)
--+.|-+.++|..++..++|++++-+=.+++ .+|..+..|++.+..
T Consensus 250 ~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p 297 (986)
T 2iw3_A 250 SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLP 297 (986)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHH
T ss_pred HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhh
Confidence 7799999999999999898888887655554 568777766655443
No 126
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=41.31 E-value=3.6e+02 Score=28.89 Aligned_cols=188 Identities=13% Similarity=0.088 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhh-hhcccCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhH
Q 003409 230 AQCLLIRYTTQV-IREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLR 308 (822)
Q Consensus 230 ~~v~llr~l~~~-~~~~~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~r 308 (822)
..+..|+-++.+ +.. ||+....+++-+..+-...+..|.--++..|-.......++...++..|..++.+.++++.
T Consensus 41 ~Kl~~L~q~~EL~l~~---dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~ 117 (386)
T 3o2t_A 41 SKITVLKQVQELIINK---DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHHTT---CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 345555555553 222 4555455555444444444444554444444332212345556677777777776666543
Q ss_pred HHHHHhhccCcCCCCchhhHHHHHHHHhccCCc-----chHH---HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcc-
Q 003409 309 FAAVRTLNKSLISDQNRSIATLAITTLLKTGNE-----SSVD---RLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPL- 379 (822)
Q Consensus 309 y~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~ne-----~Nv~---~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~- 379 (822)
=.++.+. .+|=+.++..+..--+. .-.+ .+-..+.......++..|..+++-+..+..-+.+
T Consensus 118 K~~I~~~---------tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~ 188 (386)
T 3o2t_A 118 KKAILTM---------TQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPR 188 (386)
T ss_dssp HHHHHHH---------HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHH---------HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCC
Confidence 2222221 11223333333222111 1111 1223344444444566666666666555432211
Q ss_pred ---------------------------------cHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHhCCchHHHHHHH
Q 003409 380 ---------------------------------KYRSLMNFLSNILREEGG-FEYKKAIVDSIVILIRDIPDAKENGLLH 425 (822)
Q Consensus 380 ---------------------------------~~~~~v~~l~~lL~~~g~-~~v~~~iv~~i~~iv~~~p~~~~~~l~~ 425 (822)
....+++.|+++|..... ...-..++..+..|+++.|.....++..
T Consensus 189 ~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~a 268 (386)
T 3o2t_A 189 MADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQA 268 (386)
T ss_dssp CTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHHH
T ss_pred CCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 123567777877764221 1123457788888999999988888877
Q ss_pred HHHH
Q 003409 426 LCEF 429 (822)
Q Consensus 426 L~~~ 429 (822)
|..+
T Consensus 269 L~~l 272 (386)
T 3o2t_A 269 YETL 272 (386)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7543
No 127
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=40.53 E-value=51 Score=30.18 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHH
Q 003409 136 GTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSN 181 (822)
Q Consensus 136 ~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~ 181 (822)
.+.++.++..+.+-|.+++|.|+-||+-.+-+|++.-++-+.+|+.
T Consensus 44 ~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r 89 (140)
T 1vdy_A 44 VSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQ 89 (140)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHH
Confidence 3567889999999999999999999999999999877766655543
No 128
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=39.83 E-value=1.6e+02 Score=26.83 Aligned_cols=69 Identities=12% Similarity=0.110 Sum_probs=39.6
Q ss_pred EEEEEEeecCCCcccceeEEEEEecCCCCCceEEEeccCC-CCCCCCCc--eEEEEEeeCCCCCceeeeeceeeeEE
Q 003409 603 VVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLR-SLPYDSPG--QIFGAFEKPEGVPAVGKFSNMLRFIV 676 (822)
Q Consensus 603 ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~ip~~-~L~~~~~~--~~~v~~~~~~~~~~~~~f~~~L~f~v 676 (822)
+++.....|+.. +.++||.+++...-. ++.....|-. .|+|+..+ ++.+.+..+. +.+ ..+-+.+.|.+
T Consensus 49 ~~i~~~f~N~s~-~~it~f~fQaAVPKs--~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n~~-~~~-l~LR~klsY~~ 120 (140)
T 1gyu_A 49 TVITIQASNSTE-LDMTDFVFQAAVPKT--FQLQLLSPSSSVVPAFNTGTITQVIKVLNPQ-KQQ-LRMRIKLTYNH 120 (140)
T ss_dssp EEEEEEEEECSS-SCBEEEEEEEECCTT--CEEEECCCSCSCBCGGGCCCEEEEEEEECTT-CCC-CCEEEEEEEEE
T ss_pred EEEEEEEEECCC-CccccEEEEEEcCcc--cEEEeeCCCCCccCCCCCCCEEEEEEEeCCC-CCC-EEEEEEEEEEE
Confidence 455555567664 579999999986544 8887765543 68885542 3334444432 211 33344455654
No 129
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=38.10 E-value=66 Score=39.40 Aligned_cols=111 Identities=7% Similarity=0.061 Sum_probs=75.6
Q ss_pred hhhhcccCCc-cchhH-HHHHHHHhCCC--C-cchhhhhhhHHhhcC-CCCHHHHHHHHHHhcC-------CCchhhHHH
Q 003409 75 VTKLFQSRDI-GLRRM-VYLMIKELSPS--A-DEVIIVTSSLMKDMT-SKTDMYRANAIRVLCR-------ITDGTLLTQ 141 (822)
Q Consensus 75 v~kl~~s~d~-~lKrl-~YL~l~~~~~~--~-~~~lLviNsl~kDl~-~~n~~vr~lALr~l~~-------I~~~~~~~~ 141 (822)
+.++...+|. .+.++ .+..+..++.. . +.+-.++++|..-+. +++- .|..+|.++-. +.+++--+.
T Consensus 765 ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~ 843 (997)
T 1vsy_5 765 LIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNK 843 (997)
T ss_dssp TCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHH
T ss_pred HHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 3344555555 67888 67766566543 3 336668888877776 6777 89888888532 223344467
Q ss_pred HHHHHHHhhcCCC-HHHHHHHHHHHHhhcccC-h-hHHHHHHHHHHHH
Q 003409 142 IERYLKQAIVDKN-PVVASAALVSGIHLLQTT-P-EIVKRWSNEVQEA 186 (822)
Q Consensus 142 l~~~v~~~l~d~~-p~VRk~A~la~~~l~~~~-p-e~v~~~~~~l~~l 186 (822)
+...|.++|.|+. .-||..|+-++--+.+-. + ..+..++....+.
T Consensus 844 i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~ 891 (997)
T 1vsy_5 844 ILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKG 891 (997)
T ss_dssp THHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 8889999999999 999999999987776655 5 4444455544443
No 130
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=34.37 E-value=1.2e+02 Score=29.75 Aligned_cols=70 Identities=11% Similarity=0.006 Sum_probs=57.6
Q ss_pred HHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHH
Q 003409 111 LMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWS 180 (822)
Q Consensus 111 l~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~ 180 (822)
+.+=+.|+|+.+|=.|+-.+-.-....-.+.+.+.+..++.|++-||||+.+=++-.+.+++|+.+..|+
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 4555678999888888766544444555677788888899999999999999999999999999999988
No 131
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=31.73 E-value=2.4e+02 Score=25.82 Aligned_cols=69 Identities=12% Similarity=0.103 Sum_probs=39.1
Q ss_pred EEEEEEeecCCCcccceeEEEEEecCCCCCceEEEeccCC-CCCCCCCc--eEEEEEeeCCCCCceeeeeceeeeEE
Q 003409 603 VVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLR-SLPYDSPG--QIFGAFEKPEGVPAVGKFSNMLRFIV 676 (822)
Q Consensus 603 ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~ip~~-~L~~~~~~--~~~v~~~~~~~~~~~~~f~~~L~f~v 676 (822)
+++.....|+.. +.++||.++....-. ++.....|-. .|+|+..+ ++.+.+..+.... ...-+.+.|.+
T Consensus 55 ~~i~~~f~N~s~-~~it~f~fQaAVPK~--~kLqL~ppSg~~L~p~~~~~ItQ~~~I~n~~~~~--lklR~klsY~~ 126 (146)
T 1iu1_A 55 TVITIQASNSTE-LDMTDFVFQAAVPKT--FQLQLLSPSSSIVPAFNTGTITQVIKVLNPQKQQ--LRMRIKLTYNH 126 (146)
T ss_dssp EEEEEEEEECSS-SCBEEEEEEEECCTT--SEEEECCCSCSCBCGGGCCCEEEEEEEECTTCCC--CCCEEEEEEEE
T ss_pred EEEEEEEEeCCC-CccccEEEEEEcCcc--cEEEeeCCCCCccCCCCCCCEEEEEEEeCCCCCC--EEEEEEEEEEE
Confidence 444455567654 579999999986544 8887765543 68885543 3334444432212 23333455654
No 132
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=31.41 E-value=2.4e+02 Score=27.71 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred hhhhcccCCccchhHHHHHHHHhCCCCcc-hhhhhhhHHhhcCCCCHHHHHHHHHHhcC------------CCchhhHHH
Q 003409 75 VTKLFQSRDIGLRRMVYLMIKELSPSADE-VIIVTSSLMKDMTSKTDMYRANAIRVLCR------------ITDGTLLTQ 141 (822)
Q Consensus 75 v~kl~~s~d~~lKrl~YL~l~~~~~~~~~-~lLviNsl~kDl~~~n~~vr~lALr~l~~------------I~~~~~~~~ 141 (822)
|-|..+....+.---.-+-++.+....+. .--++-+|+|=|+++||.++-+||..|-. |.+.++.+.
T Consensus 13 i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~ 92 (226)
T 3zyq_A 13 LDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEE 92 (226)
T ss_dssp HHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHH
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHH
Q ss_pred HHHHHHHhhcCCCHHHHHHHHH---HHHhhcccChhHHHHHHHHHHHHh
Q 003409 142 IERYLKQAIVDKNPVVASAALV---SGIHLLQTTPEIVKRWSNEVQEAV 187 (822)
Q Consensus 142 l~~~v~~~l~d~~p~VRk~A~l---a~~~l~~~~pe~v~~~~~~l~~ll 187 (822)
+...+.+ ..++-||++++- ....-|+..|++ ..+..+...|
T Consensus 93 l~~l~~~---~~~~~Vk~kil~li~~W~~~f~~~~~l--~~i~~~Y~~L 136 (226)
T 3zyq_A 93 LKDLLKR---QVEVNVRNKILYLIQAWAHAFRNEPKY--KVVQDTYQIM 136 (226)
T ss_dssp HHHHHHH---CCCHHHHHHHHHHHHHHHHHTTTCGGG--HHHHHHHHHH
T ss_pred HHHHhcc---CCCHHHHHHHHHHHHHHHHHhCCCcch--HHHHHHHHHH
No 133
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=31.10 E-value=4.6e+02 Score=27.97 Aligned_cols=71 Identities=10% Similarity=0.044 Sum_probs=42.3
Q ss_pred hhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHHHHHHHhccCCcc---h-H
Q 003409 269 MVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNES---S-V 344 (822)
Q Consensus 269 aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~ne~---N-v 344 (822)
-..++|++|+-.+-++.. -+..+++++. .+...+ .+|..+++.+|+.++++|..+|.-. . .
T Consensus 73 ~~~~~~l~CLkalmN~~~--------Gl~~vl~~~~-~i~~l~------~sL~s~~~~~r~~vleLL~alc~~~~~~G~~ 137 (386)
T 2bnx_A 73 RNQHEIIRCLKAFMNNKF--------GIKTMLETEE-GILLLV------RAMDPAVPNMMIDAAKLLSALCILPQPEDMN 137 (386)
T ss_dssp HHHHHHHHHHHHHTSSHH--------HHHHHHHSSS-HHHHHH------HTCCTTSHHHHHHHHHHHHHHHTCCSSTTHH
T ss_pred HHHHHHHHHHHHHhCCHH--------HHHHHHcCcH-HHHHHH------HHhCCCCchHHHHHHHHHHHHHcCCCCCChH
Confidence 466777777766654321 2233444332 233323 3566777889999999998887643 3 5
Q ss_pred HHHHHHHHHh
Q 003409 345 DRLMKQITNF 354 (822)
Q Consensus 345 ~~Iv~eL~~y 354 (822)
..+++-|..|
T Consensus 138 ~~VL~Al~~~ 147 (386)
T 2bnx_A 138 ERVLEAMTER 147 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666666554
No 134
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=30.49 E-value=2.8e+02 Score=27.31 Aligned_cols=68 Identities=7% Similarity=0.144 Sum_probs=34.5
Q ss_pred cCCCCchhhHHHHHH----HHhccC----CcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHH
Q 003409 319 LISDQNRSIATLAIT----TLLKTG----NESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMN 386 (822)
Q Consensus 319 lL~d~d~sIr~~aL~----lL~~l~----ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~ 386 (822)
.+.|+|...+|-++. +|.... ++...+.+++.+...+.+-++-++..+--+++.++.++|+....++.
T Consensus 116 W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~al~ 191 (235)
T 1t06_A 116 WIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEKAVE 191 (235)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 345555666666665 443322 33445555555555555444444455555555555555554444444
No 135
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.48 E-value=1.3e+02 Score=29.43 Aligned_cols=68 Identities=15% Similarity=0.089 Sum_probs=43.5
Q ss_pred HHHHHhCCCC-cchhhhhhhHHhhcCCCCHHHHHHHHHHhcC------------CCchhhHHHHHHHHHHhhcCCCHHHH
Q 003409 92 LMIKELSPSA-DEVIIVTSSLMKDMTSKTDMYRANAIRVLCR------------ITDGTLLTQIERYLKQAIVDKNPVVA 158 (822)
Q Consensus 92 L~l~~~~~~~-~~~lLviNsl~kDl~~~n~~vr~lALr~l~~------------I~~~~~~~~l~~~v~~~l~d~~p~VR 158 (822)
+.++.+.... +..--++-+|+|=|+++||.++-+||..|-. |.+.++.+.+...+.+ ..++-||
T Consensus 27 leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~---~~~~~Vk 103 (220)
T 1dvp_A 27 LLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES---TPHENVR 103 (220)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH---CSCHHHH
T ss_pred HHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC---CCcHHHH
Confidence 4444444443 3467788899999999999999888876653 4455555554443332 3456676
Q ss_pred HHHH
Q 003409 159 SAAL 162 (822)
Q Consensus 159 k~A~ 162 (822)
++++
T Consensus 104 ~kil 107 (220)
T 1dvp_A 104 QKML 107 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 136
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=29.27 E-value=3.8e+02 Score=28.14 Aligned_cols=110 Identities=12% Similarity=0.208 Sum_probs=63.2
Q ss_pred hHHhhcCCCCHHHHHHHHHHhcCCCch-----hhH--HHHHHHHHHhhcCCCHHHHHHHHHHHHhhcccC---hhHHHH-
Q 003409 110 SLMKDMTSKTDMYRANAIRVLCRITDG-----TLL--TQIERYLKQAIVDKNPVVASAALVSGIHLLQTT---PEIVKR- 178 (822)
Q Consensus 110 sl~kDl~~~n~~vr~lALr~l~~I~~~-----~~~--~~l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~---pe~v~~- 178 (822)
.|.+=..+...-+.+-|||++..+..- .++ ..++.-|...+.+..+-|-|.|+-=+..+.... -.++.+
T Consensus 164 ~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~a 243 (339)
T 3dad_A 164 CLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRA 243 (339)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHH
Confidence 333334455777899999999998766 444 346666667777777778766654443333222 122221
Q ss_pred ------------HHHHHHHHhc---CCChhHHHHHHHHHHHHHhc--ChHHHHHHHHHh
Q 003409 179 ------------WSNEVQEAVQ---SRAALVQFHALALLHQIRQN--DRLAVSKLVTSL 220 (822)
Q Consensus 179 ------------~~~~l~~ll~---d~~~~V~~~al~lL~~i~~~--d~~~i~~Li~~l 220 (822)
|- .+...|. ..|..++.+|++|++.+-.. |......++..+
T Consensus 244 v~~v~~~~~~~p~~-~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~L 301 (339)
T 3dad_A 244 VNSVASTTGAPPWA-NLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDAL 301 (339)
T ss_dssp HHHHHHHHCCCTTH-HHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHhhhccCCCcHH-HHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 32 3345554 45677788888887765432 223344444433
No 137
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=25.21 E-value=4.9e+02 Score=25.42 Aligned_cols=71 Identities=10% Similarity=0.048 Sum_probs=43.5
Q ss_pred hhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHHHHHHHhccCCcc---h-H
Q 003409 269 MVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNES---S-V 344 (822)
Q Consensus 269 aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~ne~---N-v 344 (822)
-..++|++|+-.+-++. .-+..++++++ .+...+ .+|..+++.+|+.++++|..+|.-. . .
T Consensus 69 ~~~~~~l~CLkalmn~~--------~G~~~vl~~~~-~i~~l~------~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~ 133 (233)
T 2f31_A 69 RNQHEIIRCLKAFMNNK--------FGIKTMLETEE-GILLLV------RAMDPAVPNMMIDAAKLLSALCILPQPEDMN 133 (233)
T ss_dssp HHHHHHHHHHHHHTSSH--------HHHHHHHTSSS-HHHHHH------TTCCTTSHHHHHHHHHHHHHHHTCSSSSCHH
T ss_pred HHHHHHHHHHHHHhCCh--------HHHHHHHcCcH-HHHHHH------HHhCCCCchHHHHHHHHHHHHHhCCCCCChH
Confidence 45667777776665431 12333444433 232222 4577788899999999998887643 4 6
Q ss_pred HHHHHHHHHh
Q 003409 345 DRLMKQITNF 354 (822)
Q Consensus 345 ~~Iv~eL~~y 354 (822)
..+++-+..|
T Consensus 134 ~~VL~Al~~~ 143 (233)
T 2f31_A 134 ERVLEAMTER 143 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6677666654
No 138
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=24.22 E-value=88 Score=36.36 Aligned_cols=66 Identities=15% Similarity=0.122 Sum_probs=42.1
Q ss_pred eEEEEEEeecCCCcccceeEEEEEecCCCCCceEEEeccC-CCCCCCCCceEEEEEeeCCCC--Cceeeeec
Q 003409 602 HVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPL-RSLPYDSPGQIFGAFEKPEGV--PAVGKFSN 670 (822)
Q Consensus 602 ~ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~ip~-~~L~~~~~~~~~v~~~~~~~~--~~~~~f~~ 670 (822)
.+..++..+|.++ .+|+|+.+.++..+- ......+.. ..++|+++.+..+.+.-...| -..+.|.|
T Consensus 602 ~~~v~v~f~NPL~-~~L~~c~~~vEG~GL--~~~~~~~~~~~~v~pg~~~~~~~~~~P~~~G~~~L~a~f~s 670 (687)
T 2q3z_A 602 KLVAEVSLQNPLP-VALEGCTFTVEGAGL--TEEQKTVEIPDPVEAGEEVKVRMDLVPLHMGLHKLVVNFES 670 (687)
T ss_dssp CEEEEEEEECCSS-SCBCSEEEEEECTTT--CSSCEEEEECSCBCTTCEEEEEEEECCCSSSCEEEEEEEEC
T ss_pred eEEEEEEEECCCC-CcccceEEEEECCCC--CCCceEEecCCCcCCCCEEEEEEEEEeccccceEEEEEEEc
Confidence 5567888899994 589999999986543 233233444 679999886666555222122 24555554
No 139
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=24.20 E-value=1.6e+02 Score=27.73 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=49.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHH
Q 003409 142 IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSK 215 (822)
Q Consensus 142 l~~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~ 215 (822)
+...|.++-....+----...+.+..+++..++-.+..+..+..-+..+|+.|+..||.+|-.+.++=...++.
T Consensus 14 ~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~ 87 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHN 87 (171)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 44555555554433333366677777776666666666666777778889999999999988887764444443
No 140
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=23.80 E-value=6.8e+02 Score=26.59 Aligned_cols=72 Identities=10% Similarity=0.048 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhccCcCCCCchhhHHHHHHHHhccCCc---ch-
Q 003409 268 EMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNE---SS- 343 (822)
Q Consensus 268 ~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~~lL~d~d~sIr~~aL~lL~~l~ne---~N- 343 (822)
..+.++|++|+-.+-++. .-+..+++++. .++..+ .+|..+++.+|+.++++|..+|.- .|
T Consensus 134 ~~~q~~~l~CLkalmN~~--------~G~~~vl~~~~-~i~~l~------~~L~s~~~~~~~~aleLL~~lc~~~~~~gG 198 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNNK--------FGIKTMLETEE-GILLLV------RAMDPAVPNMMIDAAKLLSALCILPQPEDM 198 (383)
T ss_dssp HHHHHHHHHHHHHHTSSH--------HHHHHHHTCSS-HHHHHH------HTCCTTSHHHHHHHHHHHHHHHTCCSSTTH
T ss_pred HHHHHHHHHHHHHHhcch--------hhHHHHHcChH-HHHHHH------HHhCCCchHHHHHHHHHHHHHHhCcCcCCc
Confidence 356677777776665431 12333445433 344333 357778889999999999877743 45
Q ss_pred HHHHHHHHHHh
Q 003409 344 VDRLMKQITNF 354 (822)
Q Consensus 344 v~~Iv~eL~~y 354 (822)
...+++-+..|
T Consensus 199 ~~~VL~Al~~~ 209 (383)
T 3eg5_B 199 NERVLEAMTER 209 (383)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776665
No 141
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=23.72 E-value=2e+02 Score=24.57 Aligned_cols=46 Identities=17% Similarity=0.380 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 003409 342 SSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNI 391 (822)
Q Consensus 342 ~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~l 391 (822)
-+++.|..|+..|=-+.++ +++.+...||..|.-+...+++..+.+
T Consensus 26 Vsae~L~eEfdefGi~~~d----~VldKc~ELC~~y~lda~e~VeeWmAF 71 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEE----ALIEKLVELCVQYGQNEEGMVGELIAF 71 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCH----HHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4678889999988666666 588999999999987777777777665
No 142
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=23.65 E-value=1.2e+02 Score=24.78 Aligned_cols=53 Identities=15% Similarity=0.305 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhcCCc
Q 003409 342 SSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGF 398 (822)
Q Consensus 342 ~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l~~lL~~~g~~ 398 (822)
-+++.|..||..|=-+.++ .++.++..||..|--....+++-++.+-...|+.
T Consensus 3 vs~e~l~~el~~Fgi~c~d----~v~eKl~ElC~~y~~~~~e~V~ew~Afs~s~~~~ 55 (78)
T 4e2i_2 3 ASAQQLAEELQIFGLDCEE----ALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKV 55 (78)
T ss_dssp CCHHHHHHHHHHTTCCCCH----HHHHHHHTHHHHSCCCHHHHHHHHTTHHHHTTCC
T ss_pred cCHHHHHHHHHHcCCCCcH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 4678899999999777777 5999999999999988888888887776554443
No 143
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=23.59 E-value=2.5e+02 Score=25.30 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHH
Q 003409 138 LLTQIERYLKQAIVDKNPVVASAA 161 (822)
Q Consensus 138 ~~~~l~~~v~~~l~d~~p~VRk~A 161 (822)
-.....+.|++-|.+++|.|.-.|
T Consensus 39 ~~k~a~rai~Krl~~~n~~~ql~A 62 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQA 62 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCChHHHHHH
Confidence 344455555555555555554433
No 144
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=23.25 E-value=1.7e+02 Score=25.45 Aligned_cols=68 Identities=6% Similarity=0.060 Sum_probs=41.2
Q ss_pred EEEEEeecCCCcccceeEEEEEecCCCCCceEEEeccCCCCCCCCCceEEEEEeeCCCCCceeeeeceeeeEEee
Q 003409 604 VFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKE 678 (822)
Q Consensus 604 vl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~ip~~~L~~~~~~~~~v~~~~~~~~~~~~~f~~~L~f~v~~ 678 (822)
+..+.+.|+.+. . ..+.+.++..++ +++.... .-.+++++...+.|.+..+......+ +..++|.+.+
T Consensus 34 ~Ytlki~Nkt~~-~-~~~~l~v~g~~~--l~~~g~~-~i~v~~g~~~~~~v~v~~~~~~~~~~--~~~i~f~v~~ 101 (118)
T 2r39_A 34 TYTLKVINKTQQ-V-QEYNLDVKGLND--VSWYGKQ-TIQVEPGEVLNLPMSLGADPDKLNSA--ITTIQFILTD 101 (118)
T ss_dssp EEEEEEEECSSS-C-EEEEEEEESCSS--CEEESCC-EEEECTTCEEEEEEEEEECGGGCSSS--EEEEEEEEEE
T ss_pred EEEEEEEECCCC-C-EEEEEEEeCCcc--cEEeCCC-cEEECCCCEEEEEEEEEEChHHccCC--ceeEEEEEEe
Confidence 556777898854 3 567777765433 6654321 13677888767667666665333222 3456688875
No 145
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.49 E-value=2e+02 Score=25.77 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=28.5
Q ss_pred EEEEEEeecCCCcccceeEEEEEecCCCCCceEEEeccCC-CCCCCCC
Q 003409 603 VVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLR-SLPYDSP 649 (822)
Q Consensus 603 ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~ip~~-~L~~~~~ 649 (822)
+++.....|+.. +.++||.++....-. ++.....|-. .|+++..
T Consensus 40 ~~i~~~~~N~s~-~~it~f~fQaAVPK~--~kLqL~p~Sg~~l~p~~~ 84 (131)
T 2e9g_A 40 LLITITATNFSE-GDVTHFICQAAVPKS--LQLQLQAPSGNTVPARGG 84 (131)
T ss_dssp EEEEEEEEECSS-SCEEEEEEEEECCTT--SCCEECCCSCSEECTTTC
T ss_pred EEEEEEEEECCC-CccccEEEEEEcCcc--cEEEeeCCCCCCcCCCCC
Confidence 455555567764 579999999886544 7776654433 5777553
No 146
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=22.20 E-value=7e+02 Score=26.15 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=42.2
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHH-----HHHHHhcCCChhHHHHHHHHHHHHHh
Q 003409 148 QAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSN-----EVQEAVQSRAALVQFHALALLHQIRQ 207 (822)
Q Consensus 148 ~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~-----~l~~ll~d~~~~V~~~al~lL~~i~~ 207 (822)
..|.+++.-.+|.|+..+-+++...++.+.+|++ .+.....+.+...+..+|.+|-++-.
T Consensus 125 ekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~ 189 (339)
T 3dad_A 125 EKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML 189 (339)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh
Confidence 3334577788999999999988888888877664 34455556666677777776666543
No 147
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=22.18 E-value=1.8e+02 Score=26.62 Aligned_cols=55 Identities=15% Similarity=0.029 Sum_probs=38.0
Q ss_pred HHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHH
Q 003409 160 AALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS 214 (822)
Q Consensus 160 ~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~ 214 (822)
.+.+-+..+++..|+--+..+..+..-+..+|+.|+..||.+|-.+.++=+..++
T Consensus 20 ~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh 74 (148)
T 1mhq_A 20 SAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFH 74 (148)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHH
Confidence 5566666666666655555666666667788999999999988877776444443
No 148
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=21.68 E-value=8.3e+02 Score=26.88 Aligned_cols=71 Identities=7% Similarity=0.012 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHHhhc---------CCchhHHHhhheecCCCCCCCCChHHHHHHH------HhhccCCCHHHHHHHHHH
Q 003409 417 DAKENGLLHLCEFIED---------CEFTYLSTQILHFLGTEGPKTSDPSKYIRYI------YNRVHLENATVRAAAVST 481 (822)
Q Consensus 417 ~~~~~~l~~L~~~l~~---------~~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i------~~~~~~e~~~vr~~~lta 481 (822)
+-.-.+++.|++.++. ...+...+.+++=||||....++....+..+ .+-...++++||-.+|.|
T Consensus 391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a 470 (480)
T 1ho8_A 391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKA 470 (480)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 3334588999999974 2467778888999999998888776666543 222335799999999999
Q ss_pred HHHHhh
Q 003409 482 LAKFGA 487 (822)
Q Consensus 482 l~K~~~ 487 (822)
+-|+-.
T Consensus 471 vQklm~ 476 (480)
T 1ho8_A 471 TQAIIG 476 (480)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 149
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=20.61 E-value=85 Score=36.44 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=36.7
Q ss_pred eEEEEEEeecCCCcccceeEEEEEecCCCCCceEEEeccCCCCCCCCCceEEEEE
Q 003409 602 HVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAF 656 (822)
Q Consensus 602 ~ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~ip~~~L~~~~~~~~~v~~ 656 (822)
.+..++..+|.+ +.+|+|..+.++..+- ..-...+....++|+++.+..+.+
T Consensus 609 ~l~v~v~f~NPL-~~~L~~c~~~vEG~GL--~~~~~~~~~~~v~pg~~~~~~~~~ 660 (692)
T 1vjj_A 609 PVNVQMLFSNPL-DEPVRDCVLMVEGSGL--LLGNLKIDVPTLGPKERSRVRFDI 660 (692)
T ss_dssp CEEEEEEEECCS-SSCBCSEEEEEECTTT--SSSCEEEEECCBCTTCEEEEEEEE
T ss_pred eEEEEEEEECCC-CCcccceEEEEECCCC--CCCceEEEcCccCCCCEEEEEEEE
Confidence 567788889999 4589999999986543 222233345789999886655555
No 150
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=20.33 E-value=1.6e+02 Score=27.56 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=42.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHH
Q 003409 144 RYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS 214 (822)
Q Consensus 144 ~~v~~~l~d~~p~VRk~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~ 214 (822)
..|.++-....+-.-....+.+..+++..++-.+..+..+..-+..+|+.|+..||.+|-.+.++-...++
T Consensus 18 ~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh 88 (163)
T 1x5b_A 18 QDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFH 88 (163)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33444444332222234455555666555555555666666667788899999999888877766434343
No 151
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=20.05 E-value=2e+02 Score=26.04 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=38.8
Q ss_pred HHHHHHHhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHH
Q 003409 160 AALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS 214 (822)
Q Consensus 160 ~A~la~~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~ 214 (822)
.+.+-+..++...|+--+..+..+..-+..+|+.|+..||.+|-.+.++-+..++
T Consensus 24 ~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~ 78 (140)
T 3ldz_A 24 GLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFH 78 (140)
T ss_dssp HHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHH
Confidence 5566677777766666666666677777788899999999888777666444443
Done!