BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003413
(822 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 291 bits (745), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 157/342 (45%), Positives = 219/342 (64%), Gaps = 14/342 (4%)
Query: 215 VFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRH---------- 264
V VR+RP + KEK +G V +V+K + E + K+ ++
Sbjct: 14 VVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLK 73
Query: 265 FTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVM 324
F FDA F ++++Q EV+ TT ++ + L G N +V YGATGAGKT+TMLG+ + PGVM
Sbjct: 74 FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVM 133
Query: 325 VLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGRPLVLREDKQ-GILAAGLT 383
L + L+ + + + +SYLEVYNE +RDLL PL +RED Q G++ GLT
Sbjct: 134 YLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGPLAVREDTQKGVVVHGLT 193
Query: 384 QYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGK 443
++ S++E++ LL GN+NRT PT N TSSRSHA+ Q+ + + K AS+N R+ K
Sbjct: 194 LHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIAK 253
Query: 444 LSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKK---HIPYRNSKLT 500
+SLIDLAGSERA + + R +EG NINRSLLAL + INAL + K+ HIPYRNSKLT
Sbjct: 254 MSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLT 313
Query: 501 QLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEI 542
+LLKDSLGG C T+MIA +SP ++ + +T NTL +A+RAK+I
Sbjct: 314 RLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 251 bits (642), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 144/338 (42%), Positives = 202/338 (59%), Gaps = 2/338 (0%)
Query: 209 SGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFD 268
S I V VR RP++ +E + +R+ + + + + R FTFD
Sbjct: 2 SSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFD 61
Query: 269 ASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAI 328
A + ++ + ++ + L++AVL+G N ++F YG TGAGKT+TM G E PG + +
Sbjct: 62 AVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSF 121
Query: 329 KDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGRPLVLREDK-QGILAAGLTQYRA 387
K LF I S + N +V SYLE+YNE +RDL+ L L+EDK +GI GL+ +R
Sbjct: 122 KHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIYVDGLSMHRV 181
Query: 388 YSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKLSLI 447
+ E+ AL+ +G NR T+ N+TSSRSH+I V IE + +I RVGKL+L+
Sbjct: 182 TTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVI-RVGKLNLV 240
Query: 448 DLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSL 507
DLAGSER T +EGA IN SL AL I+ LVEG HIPYR+SKLT+LL+DSL
Sbjct: 241 DLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSL 300
Query: 508 GGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTK 545
GG T+M ANISP + ++ ET +TL +ADRAK+I+ K
Sbjct: 301 GGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNK 338
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 232 bits (592), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 150/352 (42%), Positives = 204/352 (57%), Gaps = 29/352 (8%)
Query: 209 SGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRG------ 262
S + V VR RPM+ KEK + V + DV L + + +K +G
Sbjct: 19 SSESVRVVVRCRPMNGKEKAASYDKVVDV----DVKLGQVS-------VKNPKGTAHEMP 67
Query: 263 RHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENP- 321
+ FTFDA + + Q E+Y T LV++VLQG NG++F YG TG GKTYTM G +P
Sbjct: 68 KTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPE 127
Query: 322 --GVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGRP--LVLRED-KQG 376
GV+ + +FT I RS + ++V SYLE+Y E +RDLLS + L L+E G
Sbjct: 128 KRGVIPNSFDHIFTHI-SRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTG 186
Query: 377 ILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMN 436
+ L+ + S E+ ++ GNQNR+ T NE SSRSHAI + IE + ++
Sbjct: 187 VYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIE--CSEVGLD 244
Query: 437 IIN--RVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKK-HIP 493
N RVGKL+L+DLAGSER T + R E IN SL AL + I+ALV+GK HIP
Sbjct: 245 GENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIP 304
Query: 494 YRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTK 545
YR+SKLT+LL+DSLGG TVM+AN+ P + + ET TL +A+RAK I+ K
Sbjct: 305 YRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNK 356
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 196/337 (58%), Gaps = 15/337 (4%)
Query: 211 SRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDAS 270
+R+ V VRLRP + CVR ++ + + + N + L+ + FDA
Sbjct: 21 ARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLK--------YQFDAF 72
Query: 271 FPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKD 330
+ + ++Q ++Y+ + ++ +L+G+N SV YG TGAGKT+TMLG+ E PGV+ A+ D
Sbjct: 73 YGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMD 132
Query: 331 LFTKIRQRSCDGNHV---VHLSYLEVYNETVRDLLSPGR-PLVLREDKQG-ILAAGLTQY 385
L R+ +G V +SYLE+Y E V DLL P LV+RED +G IL GL+Q
Sbjct: 133 LLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLSQK 192
Query: 386 RAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKLS 445
S + ++NRT TR N+ SSRSHA+L V ++ R + A R GKL
Sbjct: 193 PISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFR--QREGKLY 250
Query: 446 LIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKD 505
LIDLAGSE T + LR E IN SL L ++AL +G +PYR+SKLT+LL+D
Sbjct: 251 LIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQD 310
Query: 506 SLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEI 542
SLGG+ ++++IANI+P + +T + L++A R+KE+
Sbjct: 311 SLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEV 347
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 217 bits (552), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 145/370 (39%), Positives = 203/370 (54%), Gaps = 53/370 (14%)
Query: 215 VFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRG------RHFTFD 268
V R RP+S+KE+ +G + + DV L + + L+ R + FTFD
Sbjct: 25 VVARCRPLSRKEEAAGHEQILTM----DVKLGQ-------VTLRNPRAAPGELPKTFTFD 73
Query: 269 ASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENP---GVMV 325
A + S+ Q ++Y T L+++VLQG NG+VF YG TG GKTYTM GT P GV+
Sbjct: 74 AVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIP 133
Query: 326 LAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLS--PGRPLVLREDKQ-GILAAGL 382
A + +FT I RS + ++V SYLE+Y E +RDLLS PG+ L L+E+ + G+ L
Sbjct: 134 NAFEHIFTHI-SRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYIKDL 192
Query: 383 TQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEY--RVKDASMNIINR 440
+ + + E+ ++ GNQ R T NE SSRSHAI + +E R D +I R
Sbjct: 193 SSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHI--R 250
Query: 441 VGKLSLIDLAGSERALATDQRTL------------------------RSLEGANINRSLL 476
VGKL+L+DLAGSER T R E + IN SL
Sbjct: 251 VGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLS 310
Query: 477 ALSSCINALVEGKK-HIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHW 535
AL + I AL + HIPYR+SKLT+LL+DSLGG T+M+A + P + S+ E+ +TL +
Sbjct: 311 ALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRF 370
Query: 536 ADRAKEIRTK 545
A+RAK I+ K
Sbjct: 371 ANRAKNIKNK 380
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 133/362 (36%), Positives = 201/362 (55%), Gaps = 35/362 (9%)
Query: 209 SGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFD 268
+G+ + V VR+RP + +E S+C +++ T N + + + F+FD
Sbjct: 2 AGASVKVAVRVRPFNSREMSRDSKCIIQMSGS----TTTIVNP----KQPKETPKSFSFD 53
Query: 269 ASFPDSTS--------QHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIE- 319
S+ TS Q +VY ++++ +G N +F YG TGAGK+YTM+G E
Sbjct: 54 YSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEK 113
Query: 320 -NPGVMVLAIKDLFTKIRQRSCDG-NHVVHLSYLEVYNETVRDLLSPGRPLVLREDKQGI 377
G++ +DLF++I + D ++ V +SY+E+Y E VRDLL+P LR + +
Sbjct: 114 DQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPL 173
Query: 378 LA---AGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDAS 434
L L++ S +++ L+ GN+ RT T NETSSRSHA+ +I + DA
Sbjct: 174 LGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAE 233
Query: 435 MNIIN-RVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVE------ 487
NI +V K+SL+DLAGSERA +T + R EGANIN+SL L I+AL E
Sbjct: 234 TNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 293
Query: 488 ------GKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKE 541
IPYR+S LT LL+++LGG T M+A +SP ++++ ET +TL +ADRAK+
Sbjct: 294 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQ 353
Query: 542 IR 543
IR
Sbjct: 354 IR 355
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 133/361 (36%), Positives = 200/361 (55%), Gaps = 35/361 (9%)
Query: 210 GSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDA 269
G+ + V VR+RP + +E S+C +++ T N + + + F+FD
Sbjct: 19 GASVKVAVRVRPFNSREMSRDSKCIIQMSGS----TTTIVNP----KQPKETPKSFSFDY 70
Query: 270 SFPDSTS--------QHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIE-- 319
S+ TS Q +VY ++++ +G N +F YG TGAGK+YTM+G E
Sbjct: 71 SYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKD 130
Query: 320 NPGVMVLAIKDLFTKIRQRSCDG-NHVVHLSYLEVYNETVRDLLSPGRPLVLREDKQGIL 378
G++ +DLF++I + D ++ V +SY+E+Y E VRDLL+P LR + +L
Sbjct: 131 QQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLL 190
Query: 379 A---AGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASM 435
L++ S +++ L+ GN+ RT T NETSSRSHA+ +I + DA
Sbjct: 191 GPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAET 250
Query: 436 NIIN-RVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVE------- 487
NI +V K+SL+DLAGSERA +T + R EGANIN+SL L I+AL E
Sbjct: 251 NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 310
Query: 488 -----GKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEI 542
IPYR+S LT LL+++LGG T M+A +SP ++++ ET +TL +ADRAK+I
Sbjct: 311 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 370
Query: 543 R 543
R
Sbjct: 371 R 371
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 213 bits (542), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 133/362 (36%), Positives = 201/362 (55%), Gaps = 35/362 (9%)
Query: 209 SGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFD 268
+G+ + V VR+RP + +E S+C +++ T N + + + F+FD
Sbjct: 2 AGASVKVAVRVRPFNSREMSRDSKCIIQMSGS----TTTIVNP----KQPKETPKSFSFD 53
Query: 269 ASFPDSTS--------QHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIE- 319
S+ TS Q +VY ++++ +G N +F YG TGAGK+YTM+G E
Sbjct: 54 YSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEK 113
Query: 320 -NPGVMVLAIKDLFTKIRQRSCDG-NHVVHLSYLEVYNETVRDLLSPGRPLVLREDKQGI 377
G++ +DLF++I + D ++ V +SY+E+Y E VRDLL+P LR + +
Sbjct: 114 DQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPL 173
Query: 378 LA---AGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDAS 434
L L++ S +++ L+ GN+ RT T NETSSRSHA+ +I + DA
Sbjct: 174 LGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAE 233
Query: 435 MNIIN-RVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVE------ 487
NI +V K+SL+DLAGSERA +T + R EGANIN+SL L I+AL E
Sbjct: 234 TNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 293
Query: 488 ------GKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKE 541
IPYR+S LT LL+++LGG T M+A +SP ++++ ET +TL +ADRAK+
Sbjct: 294 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQ 353
Query: 542 IR 543
IR
Sbjct: 354 IR 355
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 213 bits (541), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 133/362 (36%), Positives = 201/362 (55%), Gaps = 35/362 (9%)
Query: 209 SGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFD 268
+G+ + V VR+RP + +E S+C +++ T N + + + F+FD
Sbjct: 2 AGASVKVAVRVRPFNSREMSRDSKCIIQMSGS----TTTIVNP----KQPKETPKSFSFD 53
Query: 269 ASFPDSTS--------QHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIE- 319
S+ TS Q +VY ++++ +G N +F YG TGAGK+YTM+G E
Sbjct: 54 YSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEK 113
Query: 320 -NPGVMVLAIKDLFTKIRQRSCDG-NHVVHLSYLEVYNETVRDLLSPGRPLVLREDKQGI 377
G++ +DLF++I + D ++ V +SY+E+Y E VRDLL+P LR + +
Sbjct: 114 DQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPL 173
Query: 378 LA---AGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDAS 434
L L++ S +++ L+ GN+ RT T NETSSRSHA+ +I + DA
Sbjct: 174 LGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAE 233
Query: 435 MNIIN-RVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVE------ 487
NI +V K+SL+DLAGSERA +T + R EGANIN+SL L I+AL E
Sbjct: 234 TNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 293
Query: 488 ------GKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKE 541
IPYR+S LT LL+++LGG T M+A +SP ++++ ET +TL +ADRAK+
Sbjct: 294 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQ 353
Query: 542 IR 543
IR
Sbjct: 354 IR 355
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 135/354 (38%), Positives = 197/354 (55%), Gaps = 27/354 (7%)
Query: 209 SGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFD 268
S I V+VR+RP++ +E+ S V +V R+V H L + FTFD
Sbjct: 21 SNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREV-----VTRHT---LDSKLTKKFTFD 72
Query: 269 ASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLG--TIE------- 319
SF + Q +VYS + L+E VL G N +VF YG TG GKT+TM+G T E
Sbjct: 73 RSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWED 132
Query: 320 --NPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGRPLVLR-----E 372
+ G++ A+ LF ++R + + + +SYLE+YNE + DLLS +R
Sbjct: 133 DSDIGIIPRALSHLFDELRMMEVE--YTMRISYLELYNEELCDLLSTDDTTKIRIFDDST 190
Query: 373 DKQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKD 432
K ++ GL + +S D+V LL++G + R T T N SSRSH + +++ R
Sbjct: 191 KKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENG 250
Query: 433 ASMNIINRVGKLSLIDLAGSER-ALATDQRTLRSLEGANINRSLLALSSCINALVEGKKH 491
+ ++GKL+L+DLAGSE + A +++ +R E NIN+SLL L I ALV+ H
Sbjct: 251 IEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPH 310
Query: 492 IPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTK 545
+PYR SKLT+LL++SLGG T +IA ISP + ET +TL +A RAK I+ K
Sbjct: 311 VPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNK 364
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 206 bits (525), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 200/369 (54%), Gaps = 31/369 (8%)
Query: 198 KPEAVLGKHVPSGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRL 257
+P + K G I V VR+RP + E+++ + V + D E + L
Sbjct: 4 QPNSSAKKKEEKGKNIQVVVRVRPFNLAERKASAHSIV----ESDPVRKEVSVRTGGLAD 59
Query: 258 KRLRGRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGT 317
K R + +TFD F ST Q +VY A +++ V+ G N ++F YG TG GKT+TM G
Sbjct: 60 KSSR-KTYTFDMVFGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGE 118
Query: 318 ---------IENP--GVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGR 366
E+P G++ + +F K+ + + V +S LE+YNE + DLL+P
Sbjct: 119 RSPNEEYCWEEDPLAGIIPRTLHQIFEKLTDNGTEFS--VKVSLLEIYNEELFDLLNPSS 176
Query: 367 PLVLR-------EDKQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSH 419
+ R +K+G++ GL + ++ DEV +L++G RTT T N SSRSH
Sbjct: 177 DVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSH 236
Query: 420 AILQVIIEYRVKDASMNIINRVGKLSLIDLAGSE---RALATDQRTLRSLEGANINRSLL 476
++ V I + + ++GKL+L+DLAGSE R+ A D+R + E NIN+SLL
Sbjct: 237 SVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKR---AREAGNINQSLL 293
Query: 477 ALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWA 536
L I ALVE H+PYR SKLT++L+DSLGG T +IA ISP +L+ ET +TL +A
Sbjct: 294 TLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 537 DRAKEIRTK 545
RAK I K
Sbjct: 354 HRAKNILNK 362
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 202/358 (56%), Gaps = 38/358 (10%)
Query: 211 SRILVFVRLRPMSKKEKESGSRCCVR------IVNKRDVYLTE---------FANEHDYL 255
S++ V VR+RPM+++E + ++C V I+N + L++ FA +H +
Sbjct: 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCF- 59
Query: 256 RLKRLRGRHFTFDASFPDSTS-QHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314
++ D S + + Q V+ ++++ G N +F YG TG+GK+YTM
Sbjct: 60 ---------WSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM 110
Query: 315 LGTIENPGVMVLAIKDLFTKI-RQRSCDGNHVVHLSYLEVYNETVRDLLSP-GRPLVLRE 372
+GT + PG++ LF + ++ + + + V +SY+E+YNE VRDLL P G L+
Sbjct: 111 MGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKV 170
Query: 373 DKQGILA---AGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYR 429
+ +L GL++ S ++ +L+ GN++RT T NE SSRSHA+ ++ + +
Sbjct: 171 REHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHT 230
Query: 430 VKDA-SMNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVE- 487
+ D S +VGKLSL+DLAGSERA T R EG+NIN+SL L I+AL +
Sbjct: 231 LYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQ 290
Query: 488 --GK---KHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAK 540
GK K +PYR+S LT LLKDSLGG T M+A +SP ++ ET +TL +ADRAK
Sbjct: 291 SAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 135/346 (39%), Positives = 189/346 (54%), Gaps = 36/346 (10%)
Query: 215 VFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDS 274
V +R+RP+ KE G + C+++ E R+ R RHF F +
Sbjct: 15 VALRVRPLLPKELLHGHQSCLQV-------------EPGLGRVTLGRDRHFGFHVVLAED 61
Query: 275 TSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM----LGTI--ENPGVMVLAI 328
Q VY L+EA +G N +VF YG TG+GKTYTM + ++ + G++ A+
Sbjct: 62 AGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAM 121
Query: 329 KDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPG---RPLVLREDKQG-ILAAGLTQ 384
+ F I + + +VH+SYLEVY E RDLL G R + LRED++G ++ G+ +
Sbjct: 122 AEAFKLIDENDLL-DCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKE 180
Query: 385 YRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINR---- 440
DEV++LL+ GN R T T N SSRSH + V +E R + S + R
Sbjct: 181 VDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSR--LPRPAPG 238
Query: 441 ---VGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKK---HIPY 494
V K +DLAGSER L T R E IN SLLAL + I+AL + ++ HIPY
Sbjct: 239 QLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPY 298
Query: 495 RNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAK 540
R+SK+T++LKDSLGG TVMIA +SP + F ET NTL++A RA+
Sbjct: 299 RDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 202 bits (514), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 128/339 (37%), Positives = 187/339 (55%), Gaps = 17/339 (5%)
Query: 209 SGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFD 268
S I V R+RP++K++ E + D + L + + F D
Sbjct: 2 SKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHL--------LHKGKPVSFELD 53
Query: 269 ASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAI 328
F SQ +V+ A LV + + G N +F YG TGAGKTYTM GT ENPG+ A+
Sbjct: 54 KVFSPQASQQDVFQEVQA-LVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRAL 112
Query: 329 KDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLS--PGRPLVLR--EDKQGILAA-GLT 383
+ LF+++++++ D + + +S E+YNE +RDLL P L +R D G L GLT
Sbjct: 113 QLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLT 172
Query: 384 QYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGK 443
+++ S D++ + + G+ NRTTE T NE SSRSHA+L I+ R D S + GK
Sbjct: 173 EFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALL--IVTVRGVDCSTGL-RTTGK 229
Query: 444 LSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLL 503
L+L+DLAGSER + R E +IN+SL AL I AL + H+P+RNSKLT LL
Sbjct: 230 LNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLL 289
Query: 504 KDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEI 542
+DSL G T+M+ +SP + ET +L +A+R + +
Sbjct: 290 QDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 130/345 (37%), Positives = 190/345 (55%), Gaps = 23/345 (6%)
Query: 209 SGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFD 268
S + I V R RP ++ E ESG + V + K +G FTFD
Sbjct: 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDS----------KEAQG-SFTFD 52
Query: 269 ASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGT-IENP---GVM 324
F S Q +++ + V+ +L G NG+VF YG TGAGK+YTM+GT I++P GV+
Sbjct: 53 RVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVI 112
Query: 325 VLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGRP-LVLREDK-QGILAAGL 382
++ +FT I + + + V +SY+E+Y E +RDLL+P L + E+K +G+ GL
Sbjct: 113 PRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGL 172
Query: 383 TQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYR-VKDASMNIINRV 441
+ S EV +++RG R T N+ SSRSH+I + I + V+ S +
Sbjct: 173 LEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSA----KS 228
Query: 442 GKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKK-HIPYRNSKLT 500
G+L L+DLAGSE+ T E IN+SL AL INAL +GK H+PYR+SKLT
Sbjct: 229 GQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLT 288
Query: 501 QLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTK 545
++L++SLGG T +I N SP + + ET +TL + RAK I+ K
Sbjct: 289 RILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNK 333
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 188/344 (54%), Gaps = 29/344 (8%)
Query: 208 PSGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTF 267
P+ I V R RP+++ E VN+ D Y+ +F E + + + + F
Sbjct: 4 PAECNIKVMCRFRPLNESE-----------VNRGDKYVAKFQGEDTVM----IASKPYAF 48
Query: 268 DASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENP---GVM 324
D F STSQ +VY+ +V+ VL+G NG++F YG T +GK +TM G + +P G++
Sbjct: 49 DRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGII 108
Query: 325 VLAIKDLFTKIRQRSCDGNHVVHL--SYLEVYNETVRDLLSPGRP-LVLREDKQGI-LAA 380
++D+F I S D N H+ SY E+Y + +RDLL + L + EDK +
Sbjct: 109 PRIVQDIFNYIY--SMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVK 166
Query: 381 GLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINR 440
G T+ S DEVM + G NR T NE SSRSH+I + VK + +
Sbjct: 167 GCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLI----NVKQENTQTEQK 222
Query: 441 V-GKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKL 499
+ GKL L+DLAGSE+ T E NIN+SL AL + I+AL EG ++PYR+SK+
Sbjct: 223 LSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKM 282
Query: 500 TQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIR 543
T++L+DSLGG C T ++ SP + + ET++TL + RAK I+
Sbjct: 283 TRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/340 (36%), Positives = 195/340 (57%), Gaps = 25/340 (7%)
Query: 213 ILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRG-RHFTFDASF 271
+ V VR+RP++ +E+ G V +V + ++ G + F FD F
Sbjct: 6 VAVCVRVRPLNSREESLGETAQVYWKTDNNV-------------IYQVDGSKSFNFDRVF 52
Query: 272 PDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDL 331
+ + VY A ++++ +QG NG++F YG T +GKTYTM+G+ ++ GV+ AI D+
Sbjct: 53 HGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDI 112
Query: 332 FTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPG---RPLVLRED-KQGILAAGLTQYRA 387
F KI++ D ++ +SY+E+YNET+ DLL +PL++RED + + A LT+
Sbjct: 113 FQKIKKFP-DREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVV 171
Query: 388 YSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIIN--RVGKLS 445
Y+++ + + +G ++R T+ N+ SSRSH I ++I+E R K N +V L+
Sbjct: 172 YTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLN 231
Query: 446 LIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGK--KHIPYRNSKLTQLL 503
L+DLAGSERA T +R EG NINRSL L I L +G+ I YR+SKLT++L
Sbjct: 232 LVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRIL 291
Query: 504 KDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIR 543
++SLGG T +I I+P +SF ET L +A AK ++
Sbjct: 292 QNSLGGNAKTRIICTITP--VSFDETLTALQFASTAKYMK 329
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 197/369 (53%), Gaps = 31/369 (8%)
Query: 198 KPEAVLGKHVPSGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRL 257
+P + K G I V VR RP + E+++ + V D E + L
Sbjct: 6 QPNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVEC----DPVRKEVSVRTGGLAD 61
Query: 258 KRLRGRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGT 317
K R + +TFD F ST Q +VY +++ V+ G N ++F YG TG GKT+TM G
Sbjct: 62 KSSR-KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE 120
Query: 318 ---------IENP--GVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGR 366
E+P G++ + +F K+ + + V +S LE+YNE + DLL+P
Sbjct: 121 RSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFS--VKVSLLEIYNEELFDLLNPSS 178
Query: 367 PLVLR-------EDKQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSH 419
+ R +K+G++ GL + ++ DEV +L++G RTT T N SSRSH
Sbjct: 179 DVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSH 238
Query: 420 AILQVIIEYRVKDASMNIINRVGKLSLIDLAGSE---RALATDQRTLRSLEGANINRSLL 476
++ V I + + ++GKL+L+DLAGSE R+ A D+R + E NIN+SLL
Sbjct: 239 SVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKR---AREAGNINQSLL 295
Query: 477 ALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWA 536
L I ALVE H+PYR SKLT++L+DSLGG T +IA ISP +L+ ET +TL +A
Sbjct: 296 TLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 355
Query: 537 DRAKEIRTK 545
RAK I K
Sbjct: 356 HRAKNILNK 364
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 197/369 (53%), Gaps = 31/369 (8%)
Query: 198 KPEAVLGKHVPSGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRL 257
+P + K G I V VR RP + E+++ + V D E + L
Sbjct: 4 QPNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVEC----DPVRKEVSVRTGGLAD 59
Query: 258 KRLRGRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGT 317
K R + +TFD F ST Q +VY +++ V+ G N ++F YG TG GKT+TM G
Sbjct: 60 KSSR-KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE 118
Query: 318 ---------IENP--GVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGR 366
E+P G++ + +F K+ + + V +S LE+YNE + DLL+P
Sbjct: 119 RSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFS--VKVSLLEIYNEELFDLLNPSS 176
Query: 367 PLVLR-------EDKQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSH 419
+ R +K+G++ GL + ++ DEV +L++G RTT T N SSRSH
Sbjct: 177 DVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSH 236
Query: 420 AILQVIIEYRVKDASMNIINRVGKLSLIDLAGSE---RALATDQRTLRSLEGANINRSLL 476
++ V I + + ++GKL+L+DLAGSE R+ A D+R + E NIN+SLL
Sbjct: 237 SVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKR---AREAGNINQSLL 293
Query: 477 ALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWA 536
L I ALVE H+PYR SKLT++L+DSLGG T +IA ISP +L+ ET +TL +A
Sbjct: 294 TLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 537 DRAKEIRTK 545
RAK I K
Sbjct: 354 HRAKNILNK 362
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 197/369 (53%), Gaps = 31/369 (8%)
Query: 198 KPEAVLGKHVPSGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRL 257
+P + K G I V VR RP + E+++ + V D E + L
Sbjct: 3 QPNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVEC----DPVRKEVSVRTGGLAD 58
Query: 258 KRLRGRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGT 317
K R + +TFD F ST Q +VY +++ V+ G N ++F YG TG GKT+TM G
Sbjct: 59 KSSR-KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE 117
Query: 318 ---------IENP--GVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGR 366
E+P G++ + +F K+ + + V +S LE+YNE + DLL+P
Sbjct: 118 RSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFS--VKVSLLEIYNEELFDLLNPSS 175
Query: 367 PLVLR-------EDKQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSH 419
+ R +K+G++ GL + ++ DEV +L++G RTT T N SSRSH
Sbjct: 176 DVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSH 235
Query: 420 AILQVIIEYRVKDASMNIINRVGKLSLIDLAGSE---RALATDQRTLRSLEGANINRSLL 476
++ V I + + ++GKL+L+DLAGSE R+ A D+R + E NIN+SLL
Sbjct: 236 SVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKR---AREAGNINQSLL 292
Query: 477 ALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWA 536
L I ALVE H+PYR SKLT++L+DSLGG T +IA ISP +L+ ET +TL +A
Sbjct: 293 TLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 352
Query: 537 DRAKEIRTK 545
RAK I K
Sbjct: 353 HRAKNILNK 361
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 197/369 (53%), Gaps = 31/369 (8%)
Query: 198 KPEAVLGKHVPSGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRL 257
+P + K G I V VR RP + E+++ + V D E + L
Sbjct: 4 QPNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVEC----DPVRKEVSVRTGGLAD 59
Query: 258 KRLRGRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGT 317
K R + +TFD F ST Q +VY +++ V+ G N ++F YG TG GKT+TM G
Sbjct: 60 KSSR-KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE 118
Query: 318 ---------IENP--GVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGR 366
E+P G++ + +F K+ + + V +S LE+YNE + DLL+P
Sbjct: 119 RSPNEEYTWEEDPLDGIIPRTLHQIFEKLTDNGTEFS--VKVSLLEIYNEELFDLLNPSS 176
Query: 367 PLVLR-------EDKQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSH 419
+ R +K+G++ GL + ++ DEV +L++G RTT T N SSRSH
Sbjct: 177 DVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSH 236
Query: 420 AILQVIIEYRVKDASMNIINRVGKLSLIDLAGSE---RALATDQRTLRSLEGANINRSLL 476
++ V I + + ++GKL+L+DLAGSE R+ A D+R + E NIN+SLL
Sbjct: 237 SVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKR---AREAGNINQSLL 293
Query: 477 ALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWA 536
L I ALVE H+PYR SKLT++L+DSLGG T +IA ISP +L+ ET +TL +A
Sbjct: 294 TLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 537 DRAKEIRTK 545
RAK I K
Sbjct: 354 HRAKNILNK 362
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 197/369 (53%), Gaps = 31/369 (8%)
Query: 198 KPEAVLGKHVPSGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRL 257
+P + K G I V VR RP + E+++ + V D E + L
Sbjct: 4 QPNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVEC----DPVRKEVSVRTGGLAD 59
Query: 258 KRLRGRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGT 317
K R + +TFD F ST Q +VY +++ V+ G N ++F YG TG GKT+TM G
Sbjct: 60 KSSR-KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE 118
Query: 318 ---------IENP--GVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGR 366
E+P G++ + +F K+ + + V +S LE+YNE + DLL+P
Sbjct: 119 RSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFS--VKVSLLEIYNEELFDLLNPSS 176
Query: 367 PLVLR-------EDKQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSH 419
+ R +K+G++ GL + ++ DEV +L++G RTT T N SSRSH
Sbjct: 177 DVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSH 236
Query: 420 AILQVIIEYRVKDASMNIINRVGKLSLIDLAGSE---RALATDQRTLRSLEGANINRSLL 476
++ V I + + ++GKL+L+DLAGSE R+ A D+R + E NIN+SLL
Sbjct: 237 SVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKR---AREAGNINQSLL 293
Query: 477 ALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWA 536
L I ALVE H+PYR SKLT++L+DSLGG T +IA ISP +L+ ET +TL +A
Sbjct: 294 TLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 537 DRAKEIRTK 545
RAK I K
Sbjct: 354 HRAKNILNK 362
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/339 (37%), Positives = 187/339 (55%), Gaps = 29/339 (8%)
Query: 213 ILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFP 272
I V R RP+++ E VN+ D Y+ +F E + + + + FD F
Sbjct: 9 IKVMCRFRPLNESE-----------VNRGDKYIAKFQGEDTVV----IASKPYAFDRVFQ 53
Query: 273 DSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENP---GVMVLAIK 329
STSQ +VY+ +V+ VL+G NG++F YG T +GKT+TM G + +P G++ ++
Sbjct: 54 SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQ 113
Query: 330 DLFTKIRQRSCDGNHVVHL--SYLEVYNETVRDLLSPGRP-LVLREDKQGI-LAAGLTQY 385
D+F I S D N H+ SY E+Y + +RDLL + L + EDK + G T+
Sbjct: 114 DIFNYIY--SMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTER 171
Query: 386 RAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRV-GKL 444
S DEVM + G NR T NE SSRSH+I + VK + ++ GKL
Sbjct: 172 FVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLI----NVKQENTQTEQKLSGKL 227
Query: 445 SLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLK 504
L+DLAGSE+ T E NIN+SL AL + I+AL EG ++PYR+SK+T++L+
Sbjct: 228 YLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQ 287
Query: 505 DSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIR 543
DSLGG C T ++ SP + + ET++TL + RAK I+
Sbjct: 288 DSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 133/369 (36%), Positives = 195/369 (52%), Gaps = 31/369 (8%)
Query: 198 KPEAVLGKHVPSGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRL 257
+P + K G I V VR RP + E+++ + V D E + L
Sbjct: 4 QPNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVEC----DPVRKEVSVRTGGLAD 59
Query: 258 KRLRGRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGT 317
K R + +TFD F ST Q +VY +++ V+ G N ++F YG TG GKT+TM G
Sbjct: 60 KSSR-KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE 118
Query: 318 -----------IENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGR 366
+ G++ + +F K+ + + V +S LE+YNE + DLL+P
Sbjct: 119 RSPNEEYTWEEVPLAGIIPRTLHQIFEKLTDNGTEFS--VKVSLLEIYNEELFDLLNPSS 176
Query: 367 PLVLR-------EDKQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSH 419
+ R +K+G++ GL + ++ DEV +L++G RTT T N SSRSH
Sbjct: 177 DVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSH 236
Query: 420 AILQVIIEYRVKDASMNIINRVGKLSLIDLAGSE---RALATDQRTLRSLEGANINRSLL 476
++ V I + + ++GKL+L+DLAGSE R+ A D+R + E NIN+SLL
Sbjct: 237 SVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKR---AREAGNINQSLL 293
Query: 477 ALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWA 536
L I ALVE H+PYR SKLT++L+DSLGG T +IA ISP +L+ ET +TL +A
Sbjct: 294 TLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 537 DRAKEIRTK 545
RAK I K
Sbjct: 354 HRAKNILNK 362
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 193/357 (54%), Gaps = 31/357 (8%)
Query: 210 GSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDA 269
G I V VR RP + E+++ + V D E + L K R + +TFD
Sbjct: 7 GKNIQVVVRCRPFNLAERKASAHSIVEC----DPVRKEVSVRTGGLADKSSR-KTYTFDM 61
Query: 270 SFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGT---------IEN 320
F ST Q +VY +++ V+ G N ++F YG TG GKT+TM G E+
Sbjct: 62 VFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEED 121
Query: 321 P--GVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGRPLVLR------- 371
P G++ + +F K+ + + V +S LE+YNE + DLL+P + R
Sbjct: 122 PLAGIIPRTLHQIFEKLTDNGTEFS--VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDP 179
Query: 372 EDKQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVK 431
+K+G++ GL + ++ DEV +L++G RTT T N SSRSH++ V I +
Sbjct: 180 RNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKET 239
Query: 432 DASMNIINRVGKLSLIDLAGSE---RALATDQRTLRSLEGANINRSLLALSSCINALVEG 488
+ ++GKL+L+DLAGSE R+ A D+R + E NIN+SLL L I ALVE
Sbjct: 240 TIDGEELVKIGKLNLVDLAGSENIGRSGAVDKR---AREAGNINQSLLTLGRVITALVER 296
Query: 489 KKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTK 545
H+PYR SKLT++L+DSLGG T +IA ISP +L+ ET +TL +A RAK I K
Sbjct: 297 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 353
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 124/339 (36%), Positives = 190/339 (56%), Gaps = 25/339 (7%)
Query: 212 RILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASF 271
+I V+ RLRP+ +KE + R +R V+ EF EH + K + + +D F
Sbjct: 6 KIRVYCRLRPLCEKEIIAKERNAIRSVD-------EFTVEHLW---KDDKAKQHMYDRVF 55
Query: 272 PDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDL 331
+ +Q +V+ T LV++ + G N +F YG TG+GKT+T+ G NPG+ A+ +L
Sbjct: 56 DGNATQDDVFEDTKY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSEL 114
Query: 332 FTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGRP----LVLREDKQGILAA-GLTQYR 386
F +++ S + + +E+Y +T+ DLL P + L +++D +G+++ +T
Sbjct: 115 FRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVS 174
Query: 387 AYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRV---GK 443
+ +E+ ++QRG++ R T T NE SSRSH I+ VIIE S N+ + GK
Sbjct: 175 ISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIE------STNLQTQAIARGK 228
Query: 444 LSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLL 503
LS +DLAGSER + + E +IN+SL AL I+AL G +HIPYRN KLT L+
Sbjct: 229 LSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLM 288
Query: 504 KDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEI 542
DSLGG T+M NISP + ET N+L +A R + I
Sbjct: 289 SDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSI 327
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 127/338 (37%), Positives = 186/338 (55%), Gaps = 29/338 (8%)
Query: 213 ILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFP 272
I V R RP+++ E VN+ D Y+ +F E + + + + FD F
Sbjct: 9 IKVMCRFRPLNESE-----------VNRGDKYIAKFQGEDTVV----IASKPYAFDRVFQ 53
Query: 273 DSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENP---GVMVLAIK 329
STSQ +VY+ +V+ VL+G NG++F YG T +GKT+TM G + +P G++ ++
Sbjct: 54 SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQ 113
Query: 330 DLFTKIRQRSCDGNHVVHL--SYLEVYNETVRDLLSPGRP-LVLREDKQGI-LAAGLTQY 385
D+F I S D N H+ SY E+Y + +RDLL + L + EDK + G T+
Sbjct: 114 DIFNYIY--SMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTER 171
Query: 386 RAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRV-GKL 444
S DEVM + G NR T NE SSRSH+I + VK + ++ GKL
Sbjct: 172 FVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLI----NVKQENTQTEQKLSGKL 227
Query: 445 SLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLK 504
L+DLAGSE+ T E NIN+SL AL + I+AL EG ++PYR+SK+T++L+
Sbjct: 228 YLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQ 287
Query: 505 DSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEI 542
DSLGG C T ++ SP + + ET++TL + RAK I
Sbjct: 288 DSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 199 bits (506), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 193/357 (54%), Gaps = 31/357 (8%)
Query: 210 GSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDA 269
G I V VR RP + E+++ + V D E + L K R + +TFD
Sbjct: 1 GKNIQVVVRCRPFNLAERKASAHSIVEC----DPVRKEVSVRTGGLADKSSR-KTYTFDM 55
Query: 270 SFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGT---------IEN 320
F ST Q +VY +++ V+ G N ++F YG TG GKT+TM G E+
Sbjct: 56 VFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEED 115
Query: 321 P--GVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGRPLVLR------- 371
P G++ + +F K+ + + V +S LE+YNE + DLL+P + R
Sbjct: 116 PLAGIIPRTLHQIFEKLTDNGTEFS--VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDP 173
Query: 372 EDKQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVK 431
+K+G++ GL + ++ DEV +L++G RTT T N SSRSH++ V I +
Sbjct: 174 RNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKET 233
Query: 432 DASMNIINRVGKLSLIDLAGSE---RALATDQRTLRSLEGANINRSLLALSSCINALVEG 488
+ ++GKL+L+DLAGSE R+ A D+R + E NIN+SLL L I ALVE
Sbjct: 234 TIDGEELVKIGKLNLVDLAGSENIGRSGAVDKR---AREAGNINQSLLTLGRVITALVER 290
Query: 489 KKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTK 545
H+PYR SKLT++L+DSLGG T +IA ISP +L+ ET +TL +A RAK I K
Sbjct: 291 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 347
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 196 bits (498), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 135/343 (39%), Positives = 187/343 (54%), Gaps = 24/343 (6%)
Query: 212 RILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASF 271
RI V VR RP++KKE + + I +K V + E + D R L + F FD +F
Sbjct: 90 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRY--LENQTFRFDYAF 147
Query: 272 PDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIE------NPGVMV 325
DS VY T LVE + + + F YG TG+GKT+TM G + G+
Sbjct: 148 DDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYA 207
Query: 326 LAIKDLFTKIRQRSCDGNHV-VHLSYLEVYNETVRDLLSPGRPL-VLREDKQGILAAGLT 383
LA +D+F +++ + + V+ ++ E+Y+ V DLL+ L VL + KQ + GL
Sbjct: 208 LAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTKLRVLEDGKQQVQVVGLQ 267
Query: 384 QYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGK 443
+ ++V+ L+ GN RT+ T AN SSRSHA+ Q+I+ + K GK
Sbjct: 268 EREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLH--------GK 319
Query: 444 LSLIDLAGSERALAT---DQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLT 500
SLIDLAG+ER T D++T LEGA IN+SLLAL CI AL K H P+R SKLT
Sbjct: 320 FSLIDLAGNERGADTSSADRQT--RLEGAEINKSLLALKECIRALGRNKPHTPFRASKLT 377
Query: 501 QLLKDS-LGGACNTVMIANISPCNLSFGETQNTLHWADRAKEI 542
Q+L+DS +G T MIA ISP S T NTL +A+R KE+
Sbjct: 378 QVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 196 bits (498), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 132/346 (38%), Positives = 188/346 (54%), Gaps = 36/346 (10%)
Query: 215 VFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDS 274
V +R+RP+ KE G + C+++ E R+ R RHF F +
Sbjct: 15 VALRVRPLLPKELLHGHQSCLQV-------------EPGLGRVTLGRDRHFGFHVVLAED 61
Query: 275 TSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM----LGTI--ENPGVMVLAI 328
Q VY L+EA +G N +VF YG TG+GKTYTM + ++ + G++ A+
Sbjct: 62 AGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAM 121
Query: 329 KDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPG---RPLVLREDKQG-ILAAGLTQ 384
+ F I + + +VH+SYLEVY E RDLL G R + LRED++G ++ G+ +
Sbjct: 122 AEAFKLIDENDLL-DCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKE 180
Query: 385 YRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINR---- 440
DEV++LL+ GN R T T N SSRSH + V ++ R + S + R
Sbjct: 181 VDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSR--LPRPAPG 238
Query: 441 ---VGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKK---HIPY 494
V K +DLAGSER L T E IN SLLAL + I+AL + ++ +IPY
Sbjct: 239 QLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPY 298
Query: 495 RNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAK 540
R+SK+T++LKDSLGG TVMIA +SP + F ET NTL++A RA+
Sbjct: 299 RDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 136/353 (38%), Positives = 195/353 (55%), Gaps = 44/353 (12%)
Query: 212 RILVFVRLRPMSKKE---KE----SGSRCCVRIVN--KRDVYLTEFANEHDYLRLKRLRG 262
RI V VR RP++K+E KE S C+ +V+ K V LT++ L
Sbjct: 72 RICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKY-----------LEN 120
Query: 263 RHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIE--- 319
+ F FD +F ++ S VY T LV+ + +G + F YG TG+GKT+TM G +
Sbjct: 121 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKS 180
Query: 320 ---NPGVMVLAIKDLFTKIRQ-RSCDGNHVVHLSYLEVYNETVRDLLSPGRPL-VLREDK 374
+ G+ +A +D+F Q R + N V++++ E+YN V DLL+ L VL + +
Sbjct: 181 QNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSR 240
Query: 375 QGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDAS 434
Q + GL +Y D+V+ ++ G+ RT+ T AN SSRSHA Q+++ +
Sbjct: 241 QQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK----- 295
Query: 435 MNIINRV-GKLSLIDLAGSERALAT---DQRTLRSLEGANINRSLLALSSCINALVEGKK 490
R+ GK SL+DLAG+ER T D++T +EGA IN+SLLAL CI AL + K
Sbjct: 296 ----GRLHGKFSLVDLAGNERGADTSSADRQT--RMEGAEINKSLLALKECIRALGQNKA 349
Query: 491 HIPYRNSKLTQLLKDS-LGGACNTVMIANISPCNLSFGETQNTLHWADRAKEI 542
H P+R SKLTQ+L+DS +G T MIA ISP S T NTL +ADR KE+
Sbjct: 350 HTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 402
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 192 bits (488), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 132/349 (37%), Positives = 193/349 (55%), Gaps = 26/349 (7%)
Query: 212 RILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASF 271
RI V VR RP++K+E + I +K + + E + D K L + F FD +F
Sbjct: 52 RICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLT--KYLENQAFCFDFAF 109
Query: 272 PDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIE------NPGVMV 325
++ S VY T LV+ + +G + F YG TG+GKT+TM G + + G+
Sbjct: 110 DETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYA 169
Query: 326 LAIKDLFTKIRQRSC--DGNHVVHLSYLEVYNETVRDLLSPGRPL-VLREDKQGILAAGL 382
+A +D+F ++ + C V++++ E+YN + DLL+ L VL + KQ + GL
Sbjct: 170 MASRDVFL-LKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVLEDGKQQVQVVGL 228
Query: 383 TQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVG 442
++ S D+V+ ++ G+ RT+ T AN SSRSHA Q+I+ + M+ G
Sbjct: 229 QEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK---GRMH-----G 280
Query: 443 KLSLIDLAGSERALAT---DQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKL 499
K SL+DLAG+ER T D++T +EGA IN+SLLAL CI AL + K H P+R SKL
Sbjct: 281 KFSLVDLAGNERGADTSSADRQT--RMEGAEINKSLLALKECIRALGQNKAHTPFRESKL 338
Query: 500 TQLLKDS-LGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKEG 547
TQ+L+DS +G T MIA ISP S T NTL +ADR KE+ G
Sbjct: 339 TQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPHSG 387
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 194/367 (52%), Gaps = 48/367 (13%)
Query: 225 KEKESGSRCCVRI--VNKRDVYL----TEFANEHDYLRLKRLRGRHFTFDASFPDSTSQH 278
+E E + C V + +R L T+FA+ + L + FTFD SF ++
Sbjct: 52 RELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTED 111
Query: 279 E-------VYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDL 331
E VY + ++ +G + +F YG TG+GK+YTM+GT + PG++ +DL
Sbjct: 112 EHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDL 171
Query: 332 FTKI---RQRSCDGNHVVHLSYLEVYNETVRDLLSPGRP------LVLRED-KQGILAAG 381
F +I + + + ++ V +SY EVYNE VRDLL+P P L +RE +G
Sbjct: 172 FQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKD 231
Query: 382 LTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASM-NIINR 440
LT+ +E++ ++ G+ +RT T+ N+TSSRSHA+ ++++ D + R
Sbjct: 232 LTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTER 291
Query: 441 VGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKH--------- 491
++ L+DLAGSERA +T+ R EG+NIN+SL L I AL + K
Sbjct: 292 SSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVK 351
Query: 492 -------------IPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADR 538
+PYR+S LT LLKDSLGG T MIA ISP + + ET +TL +AD+
Sbjct: 352 SGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPTD--YDETLSTLRYADQ 409
Query: 539 AKEIRTK 545
AK IRT+
Sbjct: 410 AKRIRTR 416
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 186/346 (53%), Gaps = 23/346 (6%)
Query: 205 KHVPSGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRH 264
+ +P+ I V R RP++ E+++GS+ V+ N + A G+
Sbjct: 5 REIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA------------GKV 52
Query: 265 FTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENP--- 321
+ FD F + SQ +VY+ +V VL G NG++F YG T +GKT+TM G I +
Sbjct: 53 YLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQ 112
Query: 322 GVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGRP-LVLREDKQGI-LA 379
G++ + D+F I + + +SY E+Y + +RDLL + L + EDK +
Sbjct: 113 GIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYV 172
Query: 380 AGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIIN 439
G T+ S ++V +++ G NR T NE SSRSH++ + VK ++
Sbjct: 173 KGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLI----NVKQENLENQK 228
Query: 440 RV-GKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKK-HIPYRNS 497
++ GKL L+DLAGSE+ T E NIN+SL AL + I+AL +G K HIPYR+S
Sbjct: 229 KLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDS 288
Query: 498 KLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIR 543
KLT++L++SLGG T ++ SP + + ET++TL + RAK ++
Sbjct: 289 KLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVK 334
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 190 bits (483), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 135/352 (38%), Positives = 194/352 (55%), Gaps = 44/352 (12%)
Query: 213 ILVFVRLRPMSKKE---KE----SGSRCCVRIVN--KRDVYLTEFANEHDYLRLKRLRGR 263
I V VR RP++K+E KE S C+ +V+ K V LT++ L +
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKY-----------LENQ 49
Query: 264 HFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIE---- 319
F FD +F ++ S VY T LV+ + +G + F YG TG+GKT+TM G +
Sbjct: 50 AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQ 109
Query: 320 --NPGVMVLAIKDLFTKIRQ-RSCDGNHVVHLSYLEVYNETVRDLLSPGRPL-VLREDKQ 375
+ G+ +A +D+F Q R + N V++++ E+YN V DLL+ L VL + +Q
Sbjct: 110 NASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQ 169
Query: 376 GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASM 435
+ GL +Y D+V+ ++ G+ RT+ T AN SSRSHA Q+++ +
Sbjct: 170 QVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK------ 223
Query: 436 NIINRV-GKLSLIDLAGSERALAT---DQRTLRSLEGANINRSLLALSSCINALVEGKKH 491
R+ GK SL+DLAG+ER T D++T +EGA IN+SLLAL CI AL + K H
Sbjct: 224 ---GRLHGKFSLVDLAGNERGADTSSADRQT--RMEGAEINKSLLALKECIRALGQNKAH 278
Query: 492 IPYRNSKLTQLLKDS-LGGACNTVMIANISPCNLSFGETQNTLHWADRAKEI 542
P+R SKLTQ+L+DS +G T MIA ISP S T NTL +ADR KE+
Sbjct: 279 TPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 189 bits (481), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 184/339 (54%), Gaps = 25/339 (7%)
Query: 212 RILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASF 271
+I V+ R+RP+++KE + + V+ EF EH + KR + +D F
Sbjct: 14 KIRVYCRIRPLNEKESSEREKQMLTTVD-------EFTVEHPWKDDKR---KQHIYDRVF 63
Query: 272 PDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDL 331
SQ +++ T LV++ + G N +F YG TG+GKT+T+ G NPG+ A K+L
Sbjct: 64 DMRASQDDIFEDTKY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKEL 122
Query: 332 FTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGRP----LVLREDKQG-ILAAGLTQYR 386
F +++ S + + +E+Y +T+ DLL P L +++D +G + +T
Sbjct: 123 FNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIP 182
Query: 387 AYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRV---GK 443
+ +E+ +L+RG++ R T NE SSRSH IL V+IE S+++ + GK
Sbjct: 183 ISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIE------SIDLQTQSAARGK 236
Query: 444 LSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLL 503
LS +DLAGSER + + E +IN+SL AL I AL G +HIPYRN KLT L+
Sbjct: 237 LSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTMLM 296
Query: 504 KDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEI 542
DSLGG T+M N+SP + ET N+L +A R + I
Sbjct: 297 SDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTI 335
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/337 (35%), Positives = 174/337 (51%), Gaps = 18/337 (5%)
Query: 213 ILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFP 272
I V VR RP+S+ EK+ + + N +Y+ E + D K + F D F
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVD--MTKYIERHEFIVDKVFD 59
Query: 273 DSTSQHEVYSRTTADLVEAVLQ-GRNGSVFCYGATGAGKTYTMLGT-----IENPGVMVL 326
D+ VY T L+ + + G S F YG TG+GKTYTMLG+ + PG+
Sbjct: 60 DTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQY 119
Query: 327 AIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGRPLV--LREDKQGILAAGLTQ 384
A D+FT + D + +S+ E+Y + DLL R +V L K+ ++ L
Sbjct: 120 AAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQK-RKMVAALENGKKEVVVKDLKI 178
Query: 385 YRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKL 444
R + +E++ + G R N+ SSRSHAIL + +KD + N +GK+
Sbjct: 179 LRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNI----DLKDINKN--TSLGKI 232
Query: 445 SLIDLAGSERALAT-DQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLL 503
+ IDLAGSER T Q +GANINRSLLAL CI A+ K HIP+R+S+LT++L
Sbjct: 233 AFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVL 292
Query: 504 KDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAK 540
+D G ++MIANISP +T NTL ++ R K
Sbjct: 293 RDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 151/289 (52%), Gaps = 14/289 (4%)
Query: 265 FTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENP--- 321
F D D+ SQ VY D+V L G NG++ CYG TGAGKTYTM+G EN
Sbjct: 74 FKLDGVLHDA-SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHR 132
Query: 322 GVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLS-------PGRPLVLREDK 374
G++ A++ +F I +R V +SYLE+YNE++ DLLS P+ + E+
Sbjct: 133 GILPRALQQVFRMIEERPTHAI-TVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENP 191
Query: 375 QGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDAS 434
QG+ GL+ + ++ +LL G NR N+ SSRSH I + +E + S
Sbjct: 192 QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLS 251
Query: 435 MNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKK-HIP 493
K++L+DLAGSER + E IN+SL L I AL + K+ HIP
Sbjct: 252 EEKY-ITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIP 310
Query: 494 YRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEI 542
+R KLT LKDSLGG CN V++ NI ET ++L +A R K +
Sbjct: 311 FRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/330 (35%), Positives = 176/330 (53%), Gaps = 20/330 (6%)
Query: 213 ILVFVRLRPMSKKEKESGSRCCVRIV-NKRDVYLTEFANEHDYLRLKRLRGRHFTFDASF 271
I VF R+RP E E CC ++ V L D ++ + F+FD F
Sbjct: 69 IRVFCRIRP--PLESEENRMCCTWTYHDESTVELQSI----DAQAKSKMGQQIFSFDQVF 122
Query: 272 PDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDL 331
+SQ +++ + L+++ L G N +F YG TG+GKTYTM G E+ GV+ + L
Sbjct: 123 HPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLL 181
Query: 332 FTKIR-QRSCDGNHVVHLSYLEVYNETVRDLLS-PGRPLVLR---EDKQGILAAGLTQYR 386
F IR R+ + + ++LE+YNE + DLLS + + +R +K I + +T+
Sbjct: 182 FDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEET 241
Query: 387 AYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKLSL 446
+ + L+ NR T T NE SSRSHA+ + +E + A I+ VG ++L
Sbjct: 242 VLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTK--LELIGRHAEKQEIS-VGSINL 298
Query: 447 IDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDS 506
+DLAGSE + + + R E NINRSL L++ I AL++ + HIPYRNSKLT LL S
Sbjct: 299 VDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPS 354
Query: 507 LGGACNTVMIANISPCNLSFGETQNTLHWA 536
LGG T+M N+SP F E+ +L +A
Sbjct: 355 LGGNSKTLMFINVSPFQDCFQESVKSLRFA 384
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/344 (34%), Positives = 180/344 (52%), Gaps = 20/344 (5%)
Query: 213 ILVFVRLRPMSKKEKESGSRCCVRIV-NKRDVYLTEFANEHDYLRLKRLRGRHFTFDASF 271
I VF R+RP E E CC ++ V L D ++ + F+FD F
Sbjct: 61 IRVFCRIRP--PLESEENRMCCTWTYHDESTVELQSI----DAQAKSKMGQQIFSFDQVF 114
Query: 272 PDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDL 331
+SQ +++ + L+++ L G N +F YG TG+GKTYTM G E+ GV+ + L
Sbjct: 115 HPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLL 173
Query: 332 FTKIR-QRSCDGNHVVHLSYLEVYNETVRDLLS-PGRPLVLR---EDKQGILAAGLTQYR 386
F IR R+ + + ++LE+YNE + DLLS + + +R +K I + +T+
Sbjct: 174 FDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEET 233
Query: 387 AYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKLSL 446
+ + L+ NR T T NE SSRSHA+ + +E + A I+ VG ++L
Sbjct: 234 VLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTK--LELIGRHAEKQEIS-VGSINL 290
Query: 447 IDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDS 506
+DLAGSE + + + R E NINRSL L++ I AL++ + HIPYRNSKLT LL S
Sbjct: 291 VDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPS 346
Query: 507 LGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKEGEAN 550
LGG T+M N+SP F E+ +L +A + + + N
Sbjct: 347 LGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 390
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/344 (34%), Positives = 180/344 (52%), Gaps = 20/344 (5%)
Query: 213 ILVFVRLRPMSKKEKESGSRCCVRIV-NKRDVYLTEFANEHDYLRLKRLRGRHFTFDASF 271
I VF R+RP E E CC ++ V L D ++ + F+FD F
Sbjct: 55 IRVFCRIRP--PLESEENRMCCTWTYHDESTVELQSI----DAQAKSKMGQQIFSFDQVF 108
Query: 272 PDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDL 331
+SQ +++ + L+++ L G N +F YG TG+GKTYTM G E+ GV+ + L
Sbjct: 109 HPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLL 167
Query: 332 FTKIR-QRSCDGNHVVHLSYLEVYNETVRDLLS-PGRPLVLR---EDKQGILAAGLTQYR 386
F IR R+ + + ++LE+YNE + DLLS + + +R +K I + +T+
Sbjct: 168 FDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEET 227
Query: 387 AYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKLSL 446
+ + L+ NR T T NE SSRSHA+ + +E + A I+ VG ++L
Sbjct: 228 VLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTK--LELIGRHAEKQEIS-VGSINL 284
Query: 447 IDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDS 506
+DLAGSE + + + R E NINRSL L++ I AL++ + HIPYRNSKLT LL S
Sbjct: 285 VDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPS 340
Query: 507 LGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKEGEAN 550
LGG T+M N+SP F E+ +L +A + + + N
Sbjct: 341 LGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 384
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 174/329 (52%), Gaps = 18/329 (5%)
Query: 213 ILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFP 272
I VF R+RP E E CC + T D ++ + F+FD F
Sbjct: 58 IRVFCRIRP--PLESEENRMCCTWTYHDES---TVELQSIDAQAKSKMGQQIFSFDQVFH 112
Query: 273 DSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLF 332
+SQ +++ + L+++ L G N +F YG +G+GKTYTM G E+ GV+ + LF
Sbjct: 113 PLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLF 171
Query: 333 TKIR-QRSCDGNHVVHLSYLEVYNETVRDLLS-PGRPLVLR---EDKQGILAAGLTQYRA 387
IR R+ + + ++LE+YNE + DLLS + + +R +K I + +T+
Sbjct: 172 DSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETV 231
Query: 388 YSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKLSLI 447
+ + L+ NR T T NE SSRSHA+ + +E + A I+ VG ++L+
Sbjct: 232 LDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTK--LELIGRHAEKQEIS-VGSINLV 288
Query: 448 DLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSL 507
DLAGSE + + + R E NINRSL L++ I AL++ + HIPYRNSKLT LL SL
Sbjct: 289 DLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSL 344
Query: 508 GGACNTVMIANISPCNLSFGETQNTLHWA 536
GG T+M N+SP F E+ +L +A
Sbjct: 345 GGNSKTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 118/344 (34%), Positives = 179/344 (52%), Gaps = 20/344 (5%)
Query: 213 ILVFVRLRPMSKKEKESGSRCCVRIV-NKRDVYLTEFANEHDYLRLKRLRGRHFTFDASF 271
I VF R+RP E E CC ++ V L D ++ + F+FD F
Sbjct: 58 IRVFCRIRP--PLESEENRMCCTWTYHDESTVELQSI----DAQAKSKMGQQIFSFDQVF 111
Query: 272 PDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDL 331
+SQ +++ + L+++ L G N +F YG TG+GKTYTM G E+ GV+ + L
Sbjct: 112 HPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLL 170
Query: 332 FTKIR-QRSCDGNHVVHLSYLEVYNETVRDLLS-PGRPLVLR---EDKQGILAAGLTQYR 386
F IR R+ + + ++LE+YNE + DLLS + + +R +K I + +T+
Sbjct: 171 FDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEET 230
Query: 387 AYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKLSL 446
+ + L+ NR T T NE SSRSHA+ + +E + A I+ VG ++L
Sbjct: 231 VLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTK--LELIGRHAEKQEIS-VGSINL 287
Query: 447 IDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDS 506
+DLAGSE + + + R E NI RSL L++ I AL++ + HIPYRNSKLT LL S
Sbjct: 288 VDLAGSE----SPKTSTRMTETKNIKRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPS 343
Query: 507 LGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKEGEAN 550
LGG T+M N+SP F E+ +L +A + + + N
Sbjct: 344 LGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 387
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 156 bits (394), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 120/303 (39%), Positives = 162/303 (53%), Gaps = 33/303 (10%)
Query: 263 RH-FTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIEN- 320
RH F+FD FP + Q EV+ A LV++ L G +F YG TG+GKT+TM G
Sbjct: 82 RHDFSFDRVFPPGSGQDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGD 140
Query: 321 ---PGVMVLAIKDLFTKIRQRSCDG-NHVVHLSYLEVYNETVRDLLSPGRPLVLREDKQG 376
G++ A++ LF+ ++ S G + SY+E+YNETVRDLL+ G R+ + G
Sbjct: 141 PQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGT----RKGQGG 196
Query: 377 ---ILAAG-----LT----QYRAYSTD-EVMALLQRGNQNRTTEPTRANETSSRSHAILQ 423
I AG LT +Y S + EV ALL QNR T NE SSRSH++ Q
Sbjct: 197 ECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQ 256
Query: 424 VIIEYRVKDASMNIINRVGKLSLIDLAGSER-----ALATDQRTLRSLEGANINRSLLAL 478
+ I + S + LSL+DLAGSER AL +R R E IN SL L
Sbjct: 257 LQIS---GEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERE-RLRETQAINSSLSTL 312
Query: 479 SSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADR 538
I AL + H+PYRNSKLT LL++SLGG+ +M NISP + E+ N+L +A +
Sbjct: 313 GLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASK 372
Query: 539 AKE 541
+
Sbjct: 373 VNQ 375
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 155 bits (393), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 120/354 (33%), Positives = 176/354 (49%), Gaps = 46/354 (12%)
Query: 213 ILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGR----HFTFD 268
I V+ R+RP E + S + N+ A L + R GR +F FD
Sbjct: 7 IRVYCRVRPPLLNEPQDMSHILIEKFNE--------AKGAQSLTINRNEGRILSYNFQFD 58
Query: 269 ASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAI 328
F S + E++ LV++ L G N +F YG TG+GKTYTML G++ + +
Sbjct: 59 MIFEPSHTNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTL 115
Query: 329 KDLF---TKIRQRSCDGNHVVHLSYLEVYNETVRDLL--------------SPGRPLVLR 371
+F +++R N+ + Y+E+YNET+ DLL S +
Sbjct: 116 SHIFKWTANLKERGW--NYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHD 173
Query: 372 EDKQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYR-- 429
+KQG +T+ + ST +V +L++ ++ R+T TR+NE SSRSH++ V I R
Sbjct: 174 HEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNL 233
Query: 430 -VKDASMNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALV-- 486
+ S GKL+L+DLAGSER ++ R E NIN+SL L I AL
Sbjct: 234 HTGETSQ------GKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTP 287
Query: 487 -EGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRA 539
GK++IP+RNSKLT LL+ SL G T+M NI P ET N+L +A +
Sbjct: 288 DAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKV 341
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 152 bits (383), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 158/295 (53%), Gaps = 28/295 (9%)
Query: 265 FTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPG-- 322
F FD F + E++ + L+++ L G N +F YG TG+GKTYTML NPG
Sbjct: 76 FKFDKIFDQQETNDEIF-KEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTML----NPGDG 130
Query: 323 VMVLAIKDLFTKIRQRSCDG-NHVVHLSYLEVYNETVRDLLSPGRPLV------------ 369
++ I +F+ I + + G ++ V ++E+YNE + DLL G P
Sbjct: 131 IVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHE 190
Query: 370 LREDKQ--GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIE 427
+R D++ +T S D V +L+R N+ R+T T ANE SSRSH+I + +E
Sbjct: 191 IRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLE 250
Query: 428 YRVKDASMNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALV- 486
+ + G L+L+DLAGSER ++ R E +IN+SL L I+AL
Sbjct: 251 GKNEGTGEK---SQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNS 307
Query: 487 -EG-KKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRA 539
+G K+HIP+RNSKLT LL+ SL G+ T+M NISP L ET N+L +A +
Sbjct: 308 PDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKV 362
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/350 (33%), Positives = 177/350 (50%), Gaps = 31/350 (8%)
Query: 213 ILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRH-FTFDASF 271
I V++R+RP K + S + ++N + + +++ H F FD F
Sbjct: 61 IRVYLRIRPALKNLENSDTS----LINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 116
Query: 272 PDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVL--AIK 329
+ +V+ + LV++ L G N ++F YG TG+GKT+TML NPG ++ I
Sbjct: 117 DQQDTNVDVF-KEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTML----NPGDGIIPSTIS 171
Query: 330 DLFTKIRQRSCDG-NHVVHLSYLEVYNETVRDLL----------SPGRPLVLREDKQGIL 378
+F I + G ++ V+ ++E+YNE + DLL S G +R D++
Sbjct: 172 HIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKT 231
Query: 379 AAGLT--QYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMN 436
+ S + V +L++ N+ R+T T +NE SSRSH+I II +A
Sbjct: 232 TTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIF--IIHLSGSNAKTG 289
Query: 437 IINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVE---GKKHIP 493
+ G L+L+DLAGSER + R E NIN+SL AL I+AL + K+HIP
Sbjct: 290 A-HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIP 348
Query: 494 YRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIR 543
+RNSKLT LL+ SL G T+M NISP + ET N+L +A + R
Sbjct: 349 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTR 398
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 155/289 (53%), Gaps = 18/289 (6%)
Query: 265 FTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENP--G 322
F FD F S V+ + L++ L G N VF YG TG+GKT+TM +P G
Sbjct: 432 FLFDKIFEREQSNDLVFEELS-QLIQCSLDGTNVCVFAYGQTGSGKTFTM----SHPTNG 486
Query: 323 VMVLAIKDLFTKIRQRSCDG-NHVVHLSYLEVYNETVRDLLSPG-RPLVLREDKQGILAA 380
++ L++K +F I + G ++ V ++E+YNE + DLL+P P E K +A
Sbjct: 487 MIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAG 546
Query: 381 GLTQYRAYSTD-----EVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASM 435
T + D + + +L + N+ R+T T++N+ SSRSH+I II+ + + S+
Sbjct: 547 KTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIF--IIDLQGYN-SL 603
Query: 436 NIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINAL-VEGKKHIPY 494
+ G L+LIDLAGSER + R E IN+SL L I++L ++ H+PY
Sbjct: 604 TKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPY 663
Query: 495 RNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIR 543
RNSKLT LLK SLGG T+M NISP ET N+L +A + R
Sbjct: 664 RNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 115/350 (32%), Positives = 174/350 (49%), Gaps = 31/350 (8%)
Query: 213 ILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRH-FTFDASF 271
I V+ R+RP K + S + ++N + + +++ H F FD F
Sbjct: 16 IRVYCRIRPALKNLENSDTS----LINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 71
Query: 272 PDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVL--AIK 329
+ +V+ + LV++ L G N +F YG TG+GKT+TML NPG ++ I
Sbjct: 72 DQQDTNVDVF-KEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML----NPGDGIIPSTIS 126
Query: 330 DLFTKIRQRSCDG-NHVVHLSYLEVYNETVRDLL----------SPGRPLVLREDKQGIL 378
+F I + G ++ V+ ++E+YNE + DLL S G +R D++
Sbjct: 127 HIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKT 186
Query: 379 AAGLTQY--RAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMN 436
+ S + V +L++ N+ R+T T +NE SSRSH+I II +A
Sbjct: 187 TTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIF--IIHLSGSNAKTG 244
Query: 437 IINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVE---GKKHIP 493
+ G L+L+DLAGSER + R E NIN+SL L I+AL + K+HIP
Sbjct: 245 A-HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIP 303
Query: 494 YRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIR 543
+RNSKLT LL+ SL G T+M NISP + ET N+L +A + R
Sbjct: 304 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTR 353
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 115/350 (32%), Positives = 174/350 (49%), Gaps = 31/350 (8%)
Query: 213 ILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRH-FTFDASF 271
I V+ R+RP K + S + ++N + + +++ H F FD F
Sbjct: 4 IRVYCRIRPALKNLENSDTS----LINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 59
Query: 272 PDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVL--AIK 329
+ +V+ + LV++ L G N +F YG TG+GKT+TML NPG ++ I
Sbjct: 60 DQQDTNVDVF-KEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML----NPGDGIIPSTIS 114
Query: 330 DLFTKIRQRSCDG-NHVVHLSYLEVYNETVRDLL----------SPGRPLVLREDKQGIL 378
+F I + G ++ V+ ++E+YNE + DLL S G +R D++
Sbjct: 115 HIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKT 174
Query: 379 AAGLTQY--RAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMN 436
+ S + V +L++ N+ R+T T +NE SSRSH+I II +A
Sbjct: 175 TTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIF--IIHLSGSNAKTG 232
Query: 437 IINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVE---GKKHIP 493
+ G L+L+DLAGSER + R E NIN+SL L I+AL + K+HIP
Sbjct: 233 A-HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIP 291
Query: 494 YRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIR 543
+RNSKLT LL+ SL G T+M NISP + ET N+L +A + R
Sbjct: 292 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTR 341
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 150/289 (51%), Gaps = 25/289 (8%)
Query: 265 FTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM----LGTI-- 318
F FD +FP + SQ E+Y LV+ +L+G + YG TG GK+Y+M G I
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 319 ENPGVMVLAIKDLFTKI--RQRSCDGNHVVHLSYLEVYNETVRDLL--SPGRPLVLREDK 374
E+ G++ A+ D+F ++ RQ + V+ S++E+YNE DLL +P P+V +
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQ 182
Query: 375 QGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDAS 434
+ T +S ++ +L+ G +NR PT N SSRSHAI+ + ++ + +
Sbjct: 183 R------CTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSR 236
Query: 435 MNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPY 494
MNI+ DLAGSE T + EG NIN LL+++ + ++ G IPY
Sbjct: 237 MNIV---------DLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPY 287
Query: 495 RNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIR 543
R+S LT +L+ SL +A ISP ET +TL + AK++R
Sbjct: 288 RDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKLR 336
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 114/350 (32%), Positives = 173/350 (49%), Gaps = 31/350 (8%)
Query: 213 ILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRH-FTFDASF 271
I V+ R+RP K + S + ++N + + +++ H F FD F
Sbjct: 5 IRVYCRIRPALKNLENSDTS----LINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 272 PDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVL--AIK 329
+ +V+ + LV++ L G N +F YG TG+GKT+TML NPG ++ I
Sbjct: 61 DQQDTNVDVF-KEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML----NPGDGIIPSTIS 115
Query: 330 DLFTKIRQRSCDG-NHVVHLSYLEVYNETVRDLL----------SPGRPLVLREDKQGIL 378
+F I + G ++ V+ ++E+YNE + DLL S G +R D++
Sbjct: 116 HIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKT 175
Query: 379 AAGLTQY--RAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMN 436
+ S + V +L++ N+ R+T T +NE SSRSH+I II +A
Sbjct: 176 TTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIF--IIHLSGSNAKTG 233
Query: 437 IINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVE---GKKHIP 493
+ G L+L+DLAGS R + R E NIN+SL L I+AL + K+HIP
Sbjct: 234 A-HSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIP 292
Query: 494 YRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIR 543
+RNSKLT LL+ SL G T+M NISP + ET N+L +A + R
Sbjct: 293 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTR 342
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 114/350 (32%), Positives = 173/350 (49%), Gaps = 31/350 (8%)
Query: 213 ILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRH-FTFDASF 271
I V+ R+RP K + S + ++N + + +++ H F FD F
Sbjct: 5 IRVYCRIRPALKNLENSDTS----LINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 272 PDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVL--AIK 329
+ +V+ + LV++ L G N +F YG TG+GKT+TML NPG ++ I
Sbjct: 61 DQQDTNVDVF-KEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML----NPGDGIIPSTIS 115
Query: 330 DLFTKIRQRSCDG-NHVVHLSYLEVYNETVRDLL----------SPGRPLVLREDKQGIL 378
+F I + G ++ V+ ++E+YNE + DLL S G +R D++
Sbjct: 116 HIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKT 175
Query: 379 AAGLTQY--RAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMN 436
+ S + V +L++ N+ R+T T +NE SSRSH+I II +A
Sbjct: 176 TTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIF--IIHLSGSNAKTG 233
Query: 437 IINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVE---GKKHIP 493
+ G L+L+DLAGSER + R E NI +SL L I+AL + K+HIP
Sbjct: 234 A-HSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIP 292
Query: 494 YRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIR 543
+RNSKLT LL+ SL G T+M NISP + ET N+L +A + R
Sbjct: 293 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTR 342
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 114/350 (32%), Positives = 173/350 (49%), Gaps = 31/350 (8%)
Query: 213 ILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRH-FTFDASF 271
I V+ R+RP K + S + ++N + + +++ H F FD F
Sbjct: 5 IRVYCRIRPALKNLENSDTS----LINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 272 PDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVL--AIK 329
+ +V+ + LV++ L G N +F YG TG+GKT+TML NPG ++ I
Sbjct: 61 DQQDTNVDVF-KEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML----NPGDGIIPSTIS 115
Query: 330 DLFTKIRQRSCDG-NHVVHLSYLEVYNETVRDLL----------SPGRPLVLREDKQGIL 378
+F I + G ++ V+ ++E+YNE + DLL S G +R D++
Sbjct: 116 HIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKT 175
Query: 379 AAGLTQY--RAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMN 436
+ S + V +L++ N+ R+T T +NE SS SH+I II +A
Sbjct: 176 TTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIF--IIHLSGSNAKTG 233
Query: 437 IINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVE---GKKHIP 493
+ G L+L+DLAGSER + R E NIN+SL L I+AL + K+HIP
Sbjct: 234 A-HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIP 292
Query: 494 YRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIR 543
+RNSKLT LL+ SL G T+M NISP + ET N+L +A + R
Sbjct: 293 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTR 342
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 142 bits (359), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 147/286 (51%), Gaps = 25/286 (8%)
Query: 265 FTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM----LGTI-- 318
F FD +FP + SQ E+Y LV+ +L+G + YG TG GK+Y+M G I
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 319 ENPGVMVLAIKDLFTKI--RQRSCDGNHVVHLSYLEVYNETVRDLL--SPGRPLVLREDK 374
E+ G++ A+ D+F ++ RQ + V+ S++E+YNE DLL +P P+V +
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQ 182
Query: 375 QGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDAS 434
+ T +S ++ +L+ G +NR PT N SSRSHAI+ + ++ + +
Sbjct: 183 R------CTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSR 236
Query: 435 MNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPY 494
MNI+ DLAGSE T + EG NIN LL+++ + ++ G IPY
Sbjct: 237 MNIV---------DLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPY 287
Query: 495 RNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAK 540
R+S LT +L+ SL +A ISP ET +TL + AK
Sbjct: 288 RDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 130/256 (50%), Gaps = 28/256 (10%)
Query: 208 PSGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTF 267
P+ I V R RP+++ E G + + + V + + G+ + F
Sbjct: 3 PAECSIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIGQ--------------GKPYVF 48
Query: 268 DASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENP---GVM 324
D P +T+Q +VY+ +V+ VL+G NG++F YG T +GKT+TM G + +P G++
Sbjct: 49 DRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGII 108
Query: 325 VLAIKDLFTKIRQRSCDGNHVVHL--SYLEVYNETVRDLLSPGRP-LVLREDKQGI-LAA 380
D+F I S D N H+ SY E+Y + +RDLL + L + EDK +
Sbjct: 109 PRIAHDIFDHI--YSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVK 166
Query: 381 GLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINR 440
G T+ S +EVM ++ G NR T NE SSRSH+I + +K ++ +
Sbjct: 167 GCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLI----NIKQENVETEKK 222
Query: 441 V-GKLSLIDLAGSERA 455
+ GKL L+DLAGSE+
Sbjct: 223 LSGKLYLVDLAGSEKV 238
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 470 NINRSLLALSSCINALVEGKK-HIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGE 528
NIN+SL AL + I+AL EG K H+PYR+SK+T++L+DSL G C T ++ SP + E
Sbjct: 3 NINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAE 62
Query: 529 TQNTLHWADRAKEIR 543
T++TL + RAK I+
Sbjct: 63 TKSTLMFGQRAKTIK 77
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 472 NRSLLALSSCINALVEGKK-HIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQ 530
N+SL AL + I+AL EG K H+PYR+SK+T++L+DSLGG C T ++ SP + ET+
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 531 NTLHWADRAKEIR 543
+TL + RAK I+
Sbjct: 61 STLMFGQRAKTIK 73
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
Query: 283 RTTADLVEAVLQGRNGSVFC--YGATGAGKTYTMLGTIENPG--VMVLA-----IKDLFT 333
+ A LVEA+ R+G F GATG GKT TM IE G +VLA L
Sbjct: 15 KAIAGLVEAL---RDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAA 71
Query: 334 KIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGRPLVLRED 373
+ R+ + +SY + Y + PG+ L + +D
Sbjct: 72 EFRELFPENAVEYFISYYDYYQP---EAYVPGKDLYIEKD 108
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
Query: 283 RTTADLVEAVLQGRNGSVFC--YGATGAGKTYTMLGTIENPG--VMVLA-----IKDLFT 333
+ A LVEA+ R+G F GATG GKT TM IE G +VLA L
Sbjct: 16 KAIAGLVEAL---RDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAA 72
Query: 334 KIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGRPLVLRED 373
+ R+ + +SY + Y + PG+ L + +D
Sbjct: 73 EFRELFPENAVEYFISYYDYYQP---EAYVPGKDLYIEKD 109
>pdb|2UV0|E Chain E, Structure Of The P. Aeruginosa Lasr Ligand-Binding Domain
Bound To Its Autoinducer
pdb|2UV0|F Chain F, Structure Of The P. Aeruginosa Lasr Ligand-Binding Domain
Bound To Its Autoinducer
pdb|2UV0|G Chain G, Structure Of The P. Aeruginosa Lasr Ligand-Binding Domain
Bound To Its Autoinducer
pdb|2UV0|H Chain H, Structure Of The P. Aeruginosa Lasr Ligand-Binding Domain
Bound To Its Autoinducer
Length = 175
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 18 RTRTRHRSDQEDASSHVNVALRNPHHGLKEKMKALTLLYEQQKRASSAFRNQSPKP 73
+TR +H +E +++ + L P HG + ++ AL+L E + RA + +S P
Sbjct: 96 QTRKQHEFFEEASAAGLVYGLTXPLHGARGELGALSLSVEAENRAEANRFXESVLP 151
>pdb|3CYJ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
pdb|3CYJ|B Chain B, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
pdb|3CYJ|C Chain C, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
pdb|3CYJ|D Chain D, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
Length = 372
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 256 RLKRLRGRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGK 310
R++RL +T +P+S + + TT LVEA GR G + YG G+
Sbjct: 7 RVERLEVSAYTVPTDYPESDGTLQ-WDSTTMILVEAHGGGRKGLGYTYGDVSVGR 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,395,120
Number of Sequences: 62578
Number of extensions: 839590
Number of successful extensions: 1910
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1632
Number of HSP's gapped (non-prelim): 65
length of query: 822
length of database: 14,973,337
effective HSP length: 107
effective length of query: 715
effective length of database: 8,277,491
effective search space: 5918406065
effective search space used: 5918406065
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)