Query 003413
Match_columns 822
No_of_seqs 422 out of 2271
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 22:58:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4280 Kinesin-like protein [ 100.0 6.5E-91 1.4E-95 788.6 28.3 361 209-585 3-369 (574)
2 KOG0245 Kinesin-like protein [ 100.0 3.9E-90 8.5E-95 796.9 32.0 355 210-583 3-379 (1221)
3 KOG0243 Kinesin-like protein [ 100.0 3.2E-89 6.8E-94 802.7 33.3 361 208-586 46-425 (1041)
4 PLN03188 kinesin-12 family pro 100.0 5.7E-83 1.2E-87 755.8 44.2 373 159-585 71-466 (1320)
5 cd01370 KISc_KIP3_like Kinesin 100.0 2E-82 4.2E-87 692.8 37.5 331 212-542 1-338 (338)
6 KOG0241 Kinesin-like protein [ 100.0 2.8E-82 6E-87 719.1 32.9 361 210-583 3-382 (1714)
7 cd01373 KISc_KLP2_like Kinesin 100.0 1.1E-80 2.3E-85 678.9 37.3 319 211-542 1-337 (337)
8 KOG0242 Kinesin-like protein [ 100.0 5.1E-82 1.1E-86 737.4 28.7 328 210-547 5-336 (675)
9 KOG0240 Kinesin (SMY1 subfamil 100.0 3.8E-81 8.2E-86 694.3 32.7 357 209-588 5-368 (607)
10 cd01368 KISc_KIF23_like Kinesi 100.0 1.2E-79 2.6E-84 672.7 36.7 323 212-540 2-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 3.5E-78 7.7E-83 663.1 38.6 332 211-547 1-354 (356)
12 cd01367 KISc_KIF2_like Kinesin 100.0 5.4E-78 1.2E-82 653.8 34.9 320 211-540 1-322 (322)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 3.2E-77 7E-82 654.2 38.2 328 211-547 2-348 (352)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 8E-77 1.7E-81 647.1 38.1 325 211-542 1-333 (333)
15 cd01374 KISc_CENP_E Kinesin mo 100.0 3.1E-76 6.7E-81 639.0 36.2 317 212-542 1-321 (321)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 3.9E-76 8.5E-81 638.9 36.9 318 211-542 2-325 (325)
17 cd01376 KISc_KID_like Kinesin 100.0 3.7E-76 8E-81 638.5 36.4 312 212-540 1-319 (319)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 3.8E-75 8.3E-80 634.7 36.9 318 212-543 2-341 (341)
19 cd01375 KISc_KIF9_like Kinesin 100.0 1E-74 2.3E-79 630.9 36.8 322 212-540 1-334 (334)
20 KOG0239 Kinesin (KAR3 subfamil 100.0 3.6E-76 7.7E-81 686.5 21.8 340 201-550 304-648 (670)
21 cd01366 KISc_C_terminal Kinesi 100.0 1.9E-73 4.1E-78 618.6 37.7 320 210-544 1-328 (329)
22 smart00129 KISc Kinesin motor, 100.0 1.1E-71 2.5E-76 605.3 38.7 327 212-547 1-333 (335)
23 cd00106 KISc Kinesin motor dom 100.0 4.9E-71 1.1E-75 597.9 38.2 321 212-540 1-328 (328)
24 PF00225 Kinesin: Kinesin moto 100.0 1.6E-71 3.5E-76 603.2 29.7 320 218-542 1-335 (335)
25 KOG0246 Kinesin-like protein [ 100.0 9E-69 1.9E-73 593.7 29.4 359 180-546 177-545 (676)
26 KOG0247 Kinesin-like protein [ 100.0 4.7E-68 1E-72 601.5 32.6 334 209-546 29-440 (809)
27 KOG0244 Kinesin-like protein [ 100.0 9.2E-67 2E-71 605.4 9.5 315 219-550 1-325 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 2.3E-61 5E-66 557.7 29.4 283 262-547 55-341 (568)
29 cd01363 Motor_domain Myosin an 100.0 1.2E-50 2.6E-55 407.8 19.9 179 280-521 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 97.7 1.1E-07 2.3E-12 111.9 -15.4 209 263-486 353-566 (568)
31 COG0556 UvrB Helicase subunit 95.5 0.028 6E-07 65.6 7.1 91 263-358 3-100 (663)
32 COG2804 PulE Type II secretory 92.6 0.14 3E-06 59.9 4.8 29 288-316 249-277 (500)
33 PF00308 Bac_DnaA: Bacterial d 92.3 0.067 1.4E-06 56.1 1.6 49 263-314 3-51 (219)
34 PRK06893 DNA replication initi 91.0 0.18 3.9E-06 53.0 3.2 48 262-315 10-57 (229)
35 KOG0239 Kinesin (KAR3 subfamil 90.8 0.55 1.2E-05 57.2 7.4 86 263-364 26-111 (670)
36 COG2805 PilT Tfp pilus assembl 89.4 0.19 4.1E-06 55.6 1.8 30 285-314 113-142 (353)
37 PRK06620 hypothetical protein; 88.8 0.24 5.1E-06 51.9 2.0 50 262-315 10-62 (214)
38 PRK12377 putative replication 87.8 0.35 7.7E-06 52.0 2.6 49 265-315 71-119 (248)
39 PRK08116 hypothetical protein; 87.3 0.33 7.2E-06 52.5 2.1 51 263-315 80-132 (268)
40 TIGR02928 orc1/cdc6 family rep 87.0 0.96 2.1E-05 50.1 5.5 27 288-314 30-57 (365)
41 PRK00149 dnaA chromosomal repl 86.8 0.34 7.3E-06 56.0 1.9 50 262-314 116-165 (450)
42 COG1474 CDC6 Cdc6-related prot 86.6 1 2.2E-05 51.2 5.5 51 288-353 32-83 (366)
43 PRK14086 dnaA chromosomal repl 85.9 0.36 7.7E-06 58.1 1.5 51 262-315 282-332 (617)
44 PRK08084 DNA replication initi 85.6 0.48 1E-05 50.1 2.2 48 262-315 16-63 (235)
45 PRK14088 dnaA chromosomal repl 85.6 0.47 1E-05 55.0 2.2 50 262-315 99-148 (440)
46 PRK07952 DNA replication prote 85.3 0.52 1.1E-05 50.6 2.2 50 264-315 68-117 (244)
47 PRK05642 DNA replication initi 85.2 0.65 1.4E-05 49.1 2.9 46 262-314 13-62 (234)
48 PRK06526 transposase; Provisio 85.0 0.38 8.3E-06 51.8 1.1 41 271-316 77-117 (254)
49 PRK06835 DNA replication prote 85.0 0.35 7.7E-06 54.0 0.9 36 278-315 166-201 (329)
50 PRK09087 hypothetical protein; 84.9 0.43 9.4E-06 50.4 1.4 48 262-315 15-62 (226)
51 TIGR00362 DnaA chromosomal rep 84.9 0.51 1.1E-05 53.7 2.0 50 262-314 104-153 (405)
52 PF04851 ResIII: Type III rest 84.3 0.56 1.2E-05 45.6 1.8 36 277-316 8-44 (184)
53 cd00009 AAA The AAA+ (ATPases 83.6 0.75 1.6E-05 42.1 2.3 27 288-314 10-36 (151)
54 PF05673 DUF815: Protein of un 83.6 0.49 1.1E-05 51.0 1.1 129 264-422 23-155 (249)
55 COG0593 DnaA ATPase involved i 83.2 0.63 1.4E-05 53.5 1.9 51 262-315 81-131 (408)
56 PRK00411 cdc6 cell division co 82.4 1 2.3E-05 50.4 3.2 27 288-314 45-72 (394)
57 TIGR03420 DnaA_homol_Hda DnaA 81.7 1 2.2E-05 46.2 2.6 47 262-314 9-55 (226)
58 TIGR00631 uvrb excinuclease AB 81.4 2 4.4E-05 52.4 5.3 89 265-358 2-97 (655)
59 PRK08939 primosomal protein Dn 81.4 0.82 1.8E-05 50.6 1.9 51 265-316 124-175 (306)
60 PRK08903 DnaA regulatory inact 80.5 1.4 3E-05 45.7 3.2 48 262-314 12-59 (227)
61 PRK08181 transposase; Validate 80.0 1.1 2.5E-05 48.7 2.4 21 294-316 105-125 (269)
62 PRK08727 hypothetical protein; 80.0 1.1 2.3E-05 47.5 2.1 45 262-314 13-58 (233)
63 KOG2129 Uncharacterized conser 79.6 39 0.00085 39.1 14.0 27 562-588 250-276 (552)
64 PRK10436 hypothetical protein; 79.2 0.98 2.1E-05 52.8 1.6 27 289-315 210-236 (462)
65 TIGR02538 type_IV_pilB type IV 78.8 0.97 2.1E-05 54.0 1.5 28 288-315 307-334 (564)
66 PRK14087 dnaA chromosomal repl 77.8 1.1 2.5E-05 52.0 1.7 48 264-314 111-158 (450)
67 cd00046 DEXDc DEAD-like helica 77.5 0.77 1.7E-05 41.5 0.1 17 300-316 3-19 (144)
68 TIGR02533 type_II_gspE general 77.3 1.3 2.8E-05 52.2 1.9 28 288-315 233-260 (486)
69 COG1484 DnaC DNA replication p 76.2 2.1 4.6E-05 46.1 3.0 51 263-316 74-124 (254)
70 TIGR01242 26Sp45 26S proteasom 76.1 2.4 5.3E-05 47.5 3.6 52 263-314 117-173 (364)
71 PTZ00112 origin recognition co 75.9 3.6 7.8E-05 51.7 5.1 27 288-314 770-798 (1164)
72 PF13245 AAA_19: Part of AAA d 75.7 1.4 3E-05 39.0 1.2 25 289-314 3-27 (76)
73 PF13401 AAA_22: AAA domain; P 75.0 0.92 2E-05 42.2 -0.1 18 297-314 4-21 (131)
74 PF00270 DEAD: DEAD/DEAH box h 74.7 1.4 3.1E-05 42.5 1.2 26 288-315 7-32 (169)
75 PTZ00454 26S protease regulato 74.6 2 4.4E-05 49.3 2.5 52 263-314 140-196 (398)
76 smart00382 AAA ATPases associa 73.8 1.2 2.6E-05 40.1 0.4 17 298-314 3-19 (148)
77 PF00437 T2SE: Type II/IV secr 73.5 1.3 2.8E-05 47.3 0.6 18 297-314 127-144 (270)
78 TIGR01420 pilT_fam pilus retra 73.1 1.8 3.9E-05 48.5 1.6 25 290-314 115-139 (343)
79 PRK06921 hypothetical protein; 72.6 2.8 6.1E-05 45.5 2.9 36 279-315 97-135 (266)
80 PF01637 Arch_ATPase: Archaeal 72.5 1.7 3.6E-05 43.9 1.1 30 285-314 8-37 (234)
81 cd01131 PilT Pilus retraction 72.3 1.4 2.9E-05 45.4 0.4 18 297-314 1-18 (198)
82 TIGR02525 plasmid_TraJ plasmid 72.3 2 4.3E-05 49.0 1.7 19 296-314 148-166 (372)
83 cd01129 PulE-GspE PulE/GspE Th 71.7 2.3 5E-05 46.0 2.0 26 289-314 72-97 (264)
84 PF12846 AAA_10: AAA-like doma 71.4 1.4 3.1E-05 46.4 0.3 18 297-314 1-18 (304)
85 TIGR02782 TrbB_P P-type conjug 70.9 2.1 4.5E-05 47.2 1.5 27 287-314 123-149 (299)
86 COG2433 Uncharacterized conser 70.9 35 0.00076 41.3 11.3 36 562-597 426-461 (652)
87 TIGR02524 dot_icm_DotB Dot/Icm 70.8 2.2 4.7E-05 48.4 1.6 20 295-314 132-151 (358)
88 PF13604 AAA_30: AAA domain; P 70.8 2.3 5.1E-05 43.7 1.7 27 288-314 9-35 (196)
89 TIGR03015 pepcterm_ATPase puta 70.3 3.4 7.3E-05 43.6 2.8 24 291-314 37-60 (269)
90 PRK03992 proteasome-activating 70.3 3.1 6.8E-05 47.4 2.7 51 264-314 127-182 (389)
91 PF01935 DUF87: Domain of unkn 70.2 1.5 3.3E-05 45.5 0.2 16 299-314 25-40 (229)
92 PRK12422 chromosomal replicati 69.7 2.9 6.4E-05 48.7 2.4 50 262-314 105-158 (445)
93 PF08172 CASP_C: CASP C termin 69.3 27 0.00058 37.9 9.4 29 568-596 2-30 (248)
94 PF12004 DUF3498: Domain of un 69.0 1.6 3.4E-05 51.4 0.0 107 566-691 370-479 (495)
95 PF05970 PIF1: PIF1-like helic 68.9 2.8 6.1E-05 47.3 2.0 37 274-314 3-39 (364)
96 PTZ00361 26 proteosome regulat 68.4 4 8.7E-05 47.6 3.1 16 299-314 219-234 (438)
97 KOG0989 Replication factor C, 68.2 3.9 8.5E-05 45.7 2.8 35 280-314 39-74 (346)
98 PF01695 IstB_IS21: IstB-like 67.4 3.3 7.2E-05 42.1 2.0 20 297-316 47-66 (178)
99 PRK09183 transposase/IS protei 66.5 3.3 7.2E-05 44.6 1.9 20 294-315 101-120 (259)
100 PRK13894 conjugal transfer ATP 66.0 3.1 6.8E-05 46.4 1.6 27 287-314 139-165 (319)
101 PF07693 KAP_NTPase: KAP famil 65.1 6.7 0.00015 42.6 3.9 45 295-353 18-62 (325)
102 COG5008 PilU Tfp pilus assembl 64.0 4.4 9.5E-05 44.6 2.1 30 285-314 115-144 (375)
103 PRK12402 replication factor C 63.3 4.7 0.0001 43.9 2.3 41 266-314 13-53 (337)
104 PRK13833 conjugal transfer pro 63.3 3.8 8.2E-05 45.9 1.6 27 287-314 135-161 (323)
105 cd01130 VirB11-like_ATPase Typ 63.1 3.8 8.3E-05 41.5 1.5 29 285-314 14-42 (186)
106 COG1222 RPT1 ATP-dependent 26S 63.1 5 0.00011 45.7 2.4 47 266-312 149-200 (406)
107 PF13479 AAA_24: AAA domain 62.2 3 6.4E-05 43.4 0.5 19 297-315 3-21 (213)
108 PF00004 AAA: ATPase family as 62.1 2.8 6.1E-05 38.6 0.3 15 300-314 1-15 (132)
109 KOG3990 Uncharacterized conser 62.1 40 0.00087 36.7 8.7 28 565-592 225-252 (305)
110 KOG2543 Origin recognition com 61.9 3.2 6.9E-05 47.5 0.7 36 300-355 33-68 (438)
111 smart00487 DEXDc DEAD-like hel 61.1 5.1 0.00011 38.6 1.9 26 290-316 18-43 (201)
112 PF00448 SRP54: SRP54-type pro 61.0 2.9 6.2E-05 43.4 0.1 16 299-314 3-18 (196)
113 COG4962 CpaF Flp pilus assembl 60.9 4.4 9.5E-05 45.8 1.5 27 287-314 164-190 (355)
114 PF00580 UvrD-helicase: UvrD/R 60.8 3.5 7.7E-05 43.8 0.8 21 294-314 10-30 (315)
115 cd00124 MYSc Myosin motor doma 60.8 29 0.00063 42.7 8.6 35 279-314 68-103 (679)
116 smart00242 MYSc Myosin. Large 60.3 27 0.00059 43.0 8.2 35 279-314 74-109 (677)
117 PF13086 AAA_11: AAA domain; P 60.0 3.9 8.5E-05 41.2 0.9 16 299-314 19-34 (236)
118 PHA02544 44 clamp loader, smal 59.7 5.8 0.00012 43.2 2.2 21 294-314 39-60 (316)
119 cd01378 MYSc_type_I Myosin mot 59.6 29 0.00063 42.8 8.3 35 279-314 68-103 (674)
120 cd01382 MYSc_type_VI Myosin mo 59.0 33 0.00071 42.6 8.7 34 280-314 74-108 (717)
121 PF13207 AAA_17: AAA domain; P 58.9 4 8.7E-05 37.6 0.7 16 299-314 1-16 (121)
122 PRK13900 type IV secretion sys 58.6 5.4 0.00012 44.8 1.7 29 285-314 149-177 (332)
123 PRK10884 SH3 domain-containing 58.2 1.2E+02 0.0027 32.1 11.6 24 564-587 92-115 (206)
124 PF13191 AAA_16: AAA ATPase do 58.2 2.2 4.9E-05 41.8 -1.2 22 293-314 20-41 (185)
125 PRK13851 type IV secretion sys 57.0 5.9 0.00013 44.8 1.7 29 285-314 151-179 (344)
126 PLN00020 ribulose bisphosphate 56.2 8.7 0.00019 44.2 2.9 53 262-314 109-165 (413)
127 PF07106 TBPIP: Tat binding pr 55.4 1.2E+02 0.0026 30.5 10.7 30 566-595 73-102 (169)
128 cd00268 DEADc DEAD-box helicas 55.0 7.6 0.00016 39.1 2.0 22 290-313 31-52 (203)
129 TIGR00635 ruvB Holliday juncti 54.4 8.5 0.00018 41.6 2.4 42 272-314 4-47 (305)
130 PF01580 FtsK_SpoIIIE: FtsK/Sp 54.3 4 8.8E-05 41.6 -0.1 16 299-314 40-55 (205)
131 PRK12723 flagellar biosynthesi 53.9 10 0.00022 43.7 2.9 18 297-314 174-191 (388)
132 PRK11637 AmiB activator; Provi 53.7 1.4E+02 0.0029 34.7 12.1 20 740-759 333-353 (428)
133 PTZ00424 helicase 45; Provisio 53.7 6.5 0.00014 44.1 1.4 25 288-314 58-82 (401)
134 PF13671 AAA_33: AAA domain; P 52.9 5.5 0.00012 37.6 0.6 15 300-314 2-16 (143)
135 TIGR03499 FlhF flagellar biosy 52.8 10 0.00022 41.3 2.8 16 299-314 196-211 (282)
136 PF00910 RNA_helicase: RNA hel 52.7 4.5 9.7E-05 37.5 -0.1 26 300-335 1-26 (107)
137 PF02562 PhoH: PhoH-like prote 52.7 8.2 0.00018 40.6 1.9 19 296-314 18-36 (205)
138 COG1201 Lhr Lhr-like helicases 52.5 17 0.00038 45.5 4.8 24 289-314 31-54 (814)
139 PLN03025 replication factor C 52.1 9.4 0.0002 42.1 2.3 21 295-315 32-52 (319)
140 PHA00729 NTP-binding motif con 51.6 11 0.00023 40.4 2.5 30 285-314 5-34 (226)
141 PF00063 Myosin_head: Myosin h 51.6 8.2 0.00018 47.2 1.9 35 279-314 67-102 (689)
142 PRK13342 recombination factor 51.2 8.1 0.00018 44.3 1.7 38 276-314 16-53 (413)
143 PF05496 RuvB_N: Holliday junc 51.2 16 0.00035 39.3 3.7 42 271-313 23-66 (233)
144 PRK11776 ATP-dependent RNA hel 51.2 8.7 0.00019 44.4 2.0 23 289-313 35-57 (460)
145 PF07728 AAA_5: AAA domain (dy 51.1 5 0.00011 38.1 0.0 15 300-314 2-16 (139)
146 PF13238 AAA_18: AAA domain; P 50.5 6.4 0.00014 36.1 0.6 15 300-314 1-15 (129)
147 PRK13764 ATPase; Provisional 49.9 7.9 0.00017 46.9 1.4 19 296-314 256-274 (602)
148 KOG0926 DEAH-box RNA helicase 49.9 9.4 0.0002 47.3 2.0 19 296-314 270-288 (1172)
149 PF14389 Lzipper-MIP1: Leucine 48.9 2.1E+02 0.0045 26.3 10.1 29 565-593 8-36 (88)
150 CHL00081 chlI Mg-protoporyphyr 48.0 8.8 0.00019 43.6 1.3 44 263-314 12-55 (350)
151 PRK06547 hypothetical protein; 47.9 14 0.0003 37.6 2.6 28 287-314 5-32 (172)
152 PF06048 DUF927: Domain of unk 47.4 13 0.00027 40.8 2.3 34 280-314 177-210 (286)
153 PF07724 AAA_2: AAA domain (Cd 47.2 7.1 0.00015 39.6 0.4 17 298-314 4-20 (171)
154 PRK11192 ATP-dependent RNA hel 47.2 11 0.00023 43.2 1.9 24 289-314 32-55 (434)
155 PRK00440 rfc replication facto 46.8 13 0.00028 40.1 2.4 21 294-314 35-55 (319)
156 PF06414 Zeta_toxin: Zeta toxi 46.1 7.6 0.00016 39.8 0.4 19 296-314 14-32 (199)
157 COG1419 FlhF Flagellar GTP-bin 45.7 14 0.0003 42.8 2.4 37 278-314 180-220 (407)
158 PRK04837 ATP-dependent RNA hel 45.5 11 0.00025 42.9 1.8 24 289-314 39-62 (423)
159 KOG0727 26S proteasome regulat 45.1 18 0.0004 39.6 3.1 73 267-339 154-248 (408)
160 PRK13729 conjugal transfer pil 44.9 90 0.002 37.0 8.7 49 642-690 66-117 (475)
161 COG2607 Predicted ATPase (AAA+ 44.9 8.3 0.00018 42.0 0.4 50 290-361 77-127 (287)
162 PF00038 Filament: Intermediat 44.9 70 0.0015 35.0 7.7 123 523-679 164-289 (312)
163 PRK10536 hypothetical protein; 44.5 11 0.00024 41.1 1.4 41 264-314 51-91 (262)
164 PRK10590 ATP-dependent RNA hel 44.1 13 0.00029 43.0 2.0 24 289-314 32-55 (456)
165 PRK11448 hsdR type I restricti 44.1 12 0.00025 48.7 1.7 31 285-316 422-452 (1123)
166 PRK11331 5-methylcytosine-spec 43.8 14 0.0003 43.5 2.0 29 506-538 319-347 (459)
167 TIGR00348 hsdR type I site-spe 43.7 14 0.0003 45.3 2.2 32 284-316 246-282 (667)
168 PRK11637 AmiB activator; Provi 43.7 2.1E+02 0.0045 33.2 11.5 22 646-667 104-125 (428)
169 TIGR02881 spore_V_K stage V sp 43.7 9.9 0.00021 40.7 0.8 17 298-314 43-59 (261)
170 PF03215 Rad17: Rad17 cell cyc 43.4 13 0.00029 44.2 1.9 30 285-314 31-62 (519)
171 PRK14722 flhF flagellar biosyn 43.1 9.1 0.0002 43.8 0.5 18 297-314 137-154 (374)
172 PRK04195 replication factor C 42.6 12 0.00026 43.8 1.4 30 285-314 26-56 (482)
173 KOG0736 Peroxisome assembly fa 42.4 28 0.0006 43.4 4.3 24 41-64 402-425 (953)
174 PRK14961 DNA polymerase III su 42.4 16 0.00035 41.2 2.3 41 266-314 14-55 (363)
175 PRK00080 ruvB Holliday junctio 41.9 15 0.00033 40.6 2.0 39 275-314 28-68 (328)
176 PF09726 Macoilin: Transmembra 41.8 55 0.0012 40.6 6.8 26 698-723 626-652 (697)
177 COG1223 Predicted ATPase (AAA+ 41.4 10 0.00022 41.8 0.4 16 299-314 153-168 (368)
178 PF11559 ADIP: Afadin- and alp 41.0 3.6E+02 0.0079 26.5 11.8 33 654-686 117-149 (151)
179 PF12775 AAA_7: P-loop contain 41.0 13 0.00028 40.5 1.2 26 288-314 25-50 (272)
180 cd01120 RecA-like_NTPases RecA 40.8 9.5 0.00021 36.0 0.1 15 300-314 2-16 (165)
181 TIGR02788 VirB11 P-type DNA tr 40.6 18 0.0004 39.9 2.3 29 285-314 133-161 (308)
182 KOG3859 Septins (P-loop GTPase 40.3 15 0.00032 40.7 1.5 24 291-314 36-59 (406)
183 TIGR01241 FtsH_fam ATP-depende 40.3 10 0.00022 44.5 0.3 50 264-314 51-105 (495)
184 COG1730 GIM5 Predicted prefold 40.2 3.7E+02 0.008 27.1 11.1 45 643-687 92-136 (145)
185 KOG4673 Transcription factor T 40.2 1.4E+02 0.0031 36.8 9.5 112 564-692 345-468 (961)
186 TIGR03819 heli_sec_ATPase heli 40.2 16 0.00034 41.3 1.7 29 285-314 167-195 (340)
187 TIGR02237 recomb_radB DNA repa 39.9 15 0.00032 37.5 1.4 25 290-314 2-29 (209)
188 PF15290 Syntaphilin: Golgi-lo 39.6 1.5E+02 0.0033 33.0 8.8 37 633-669 105-141 (305)
189 PRK13341 recombination factor 39.3 17 0.00037 45.1 2.0 21 294-314 49-69 (725)
190 PF03962 Mnd1: Mnd1 family; I 39.2 4E+02 0.0087 27.8 11.7 23 566-588 70-92 (188)
191 KOG1514 Origin recognition com 39.2 30 0.00065 42.6 3.9 51 490-546 572-631 (767)
192 PRK04328 hypothetical protein; 39.2 20 0.00044 38.3 2.3 27 287-313 10-39 (249)
193 PF05729 NACHT: NACHT domain 39.1 12 0.00025 35.8 0.4 16 299-314 2-17 (166)
194 TIGR02640 gas_vesic_GvpN gas v 38.9 23 0.00049 38.1 2.7 28 285-314 11-38 (262)
195 PRK10416 signal recognition pa 38.9 23 0.0005 39.6 2.8 17 298-314 115-131 (318)
196 cd01383 MYSc_type_VIII Myosin 38.1 27 0.00058 43.1 3.4 35 279-314 74-109 (677)
197 PF10236 DAP3: Mitochondrial r 38.1 18 0.00038 40.2 1.7 22 293-314 19-40 (309)
198 TIGR02902 spore_lonB ATP-depen 37.6 20 0.00043 42.8 2.2 43 264-314 61-103 (531)
199 PHA02244 ATPase-like protein 37.4 28 0.00061 40.1 3.2 26 287-314 111-136 (383)
200 cd01381 MYSc_type_VII Myosin m 37.3 28 0.0006 42.9 3.3 35 279-314 68-103 (671)
201 cd01384 MYSc_type_XI Myosin mo 37.1 27 0.00058 43.1 3.2 34 280-314 71-105 (674)
202 COG1219 ClpX ATP-dependent pro 36.9 15 0.00031 41.6 0.8 17 297-313 97-113 (408)
203 PF06745 KaiC: KaiC; InterPro 36.9 21 0.00046 36.9 2.0 25 289-313 8-35 (226)
204 COG2256 MGS1 ATPase related to 36.8 18 0.0004 41.8 1.6 38 275-313 27-64 (436)
205 KOG0335 ATP-dependent RNA heli 36.8 15 0.00031 43.4 0.8 23 293-317 109-131 (482)
206 smart00763 AAA_PrkA PrkA AAA d 36.8 33 0.00071 39.3 3.6 42 267-313 49-94 (361)
207 PRK11634 ATP-dependent RNA hel 36.7 18 0.0004 44.0 1.7 24 289-314 37-60 (629)
208 PRK05580 primosome assembly pr 36.7 18 0.0004 44.4 1.7 39 270-315 142-180 (679)
209 cd01123 Rad51_DMC1_radA Rad51_ 36.6 20 0.00044 37.1 1.8 29 286-314 5-36 (235)
210 cd01385 MYSc_type_IX Myosin mo 36.5 27 0.00059 43.2 3.1 35 279-314 76-111 (692)
211 cd01377 MYSc_type_II Myosin mo 36.4 26 0.00057 43.2 3.0 35 279-314 73-108 (693)
212 PRK04537 ATP-dependent RNA hel 36.4 18 0.00039 43.5 1.5 24 289-314 40-63 (572)
213 PF13476 AAA_23: AAA domain; P 36.4 13 0.00028 36.7 0.3 17 298-314 20-36 (202)
214 PF02456 Adeno_IVa2: Adenoviru 36.4 12 0.00025 42.1 -0.0 66 300-365 90-186 (369)
215 PRK00771 signal recognition pa 36.2 31 0.00067 40.4 3.4 18 297-314 95-112 (437)
216 TIGR01618 phage_P_loop phage n 36.1 13 0.00029 39.5 0.3 18 297-314 12-29 (220)
217 cd01387 MYSc_type_XV Myosin mo 36.1 28 0.0006 43.0 3.1 35 279-314 69-104 (677)
218 PRK14974 cell division protein 36.0 32 0.0007 38.9 3.4 18 297-314 140-157 (336)
219 COG1579 Zn-ribbon protein, pos 36.0 42 0.0009 36.4 4.0 15 746-760 189-204 (239)
220 cd01127 TrwB Bacterial conjuga 35.9 15 0.00032 42.3 0.7 18 297-314 42-59 (410)
221 PF06309 Torsin: Torsin; Inte 35.6 32 0.0007 33.8 2.9 26 299-334 55-80 (127)
222 PF00735 Septin: Septin; Inte 35.6 12 0.00025 41.1 -0.2 21 294-314 1-21 (281)
223 PRK06067 flagellar accessory p 35.5 25 0.00054 36.8 2.2 30 285-314 10-42 (234)
224 cd01126 TraG_VirD4 The TraG/Tr 35.4 19 0.00042 40.6 1.5 16 300-315 2-17 (384)
225 TIGR02903 spore_lon_C ATP-depe 35.3 26 0.00055 42.7 2.6 43 264-314 150-192 (615)
226 PF13173 AAA_14: AAA domain 35.2 15 0.00031 34.9 0.4 17 298-314 3-19 (128)
227 PRK00131 aroK shikimate kinase 35.0 17 0.00036 35.4 0.8 17 298-314 5-21 (175)
228 PRK10865 protein disaggregatio 34.8 20 0.00043 45.3 1.7 17 298-314 599-615 (857)
229 COG4096 HsdR Type I site-speci 34.6 35 0.00076 42.7 3.5 37 279-316 167-204 (875)
230 PF08537 NBP1: Fungal Nap bind 34.6 1E+02 0.0023 34.7 6.9 42 650-692 180-221 (323)
231 PF09726 Macoilin: Transmembra 34.5 2.7E+02 0.0057 34.9 11.0 30 565-594 418-447 (697)
232 TIGR02030 BchI-ChlI magnesium 34.2 23 0.00049 40.0 1.8 42 265-314 1-42 (337)
233 TIGR00614 recQ_fam ATP-depende 34.2 25 0.00055 41.0 2.3 25 288-314 19-43 (470)
234 PF03962 Mnd1: Mnd1 family; I 34.0 3E+02 0.0065 28.7 9.8 34 565-598 62-95 (188)
235 cd01380 MYSc_type_V Myosin mot 33.6 32 0.00069 42.6 3.1 34 280-314 69-103 (691)
236 KOG2373 Predicted mitochondria 33.5 35 0.00075 39.1 3.0 27 287-314 261-290 (514)
237 TIGR00618 sbcc exonuclease Sbc 33.3 39 0.00085 43.5 3.9 17 298-314 27-43 (1042)
238 PRK05703 flhF flagellar biosyn 33.0 16 0.00034 42.5 0.3 17 298-314 222-238 (424)
239 TIGR01359 UMP_CMP_kin_fam UMP- 32.9 18 0.0004 35.9 0.7 14 300-313 2-15 (183)
240 PRK10917 ATP-dependent DNA hel 32.9 31 0.00068 42.4 2.9 40 271-314 260-299 (681)
241 PRK09361 radB DNA repair and r 32.9 31 0.00068 35.7 2.5 30 285-314 8-40 (225)
242 TIGR01243 CDC48 AAA family ATP 32.8 17 0.00037 44.9 0.6 52 263-314 173-229 (733)
243 PF02534 T4SS-DNA_transf: Type 32.8 30 0.00065 40.0 2.5 17 298-314 45-61 (469)
244 cd01393 recA_like RecA is a b 32.7 26 0.00055 36.1 1.8 30 285-314 4-36 (226)
245 cd02021 GntK Gluconate kinase 32.7 18 0.0004 34.7 0.7 15 300-314 2-16 (150)
246 TIGR00376 DNA helicase, putati 32.5 25 0.00054 43.0 1.9 26 289-315 166-191 (637)
247 PF13555 AAA_29: P-loop contai 32.4 16 0.00034 31.6 0.1 15 300-314 26-40 (62)
248 PF12325 TMF_TATA_bd: TATA ele 32.4 4.9E+02 0.011 25.4 10.7 31 565-595 16-46 (120)
249 cd01850 CDC_Septin CDC/Septin. 32.4 17 0.00037 39.6 0.4 21 294-314 1-21 (276)
250 PRK01297 ATP-dependent RNA hel 32.2 23 0.00051 41.2 1.6 25 288-314 117-141 (475)
251 KOG1029 Endocytic adaptor prot 32.1 2.5E+02 0.0055 35.3 9.8 11 750-760 697-707 (1118)
252 PF10146 zf-C4H2: Zinc finger- 31.9 6.3E+02 0.014 27.3 12.0 39 647-685 62-100 (230)
253 cd00464 SK Shikimate kinase (S 31.8 20 0.00043 34.3 0.7 16 299-314 1-16 (154)
254 PHA02653 RNA helicase NPH-II; 31.7 32 0.0007 42.4 2.7 33 275-313 163-195 (675)
255 PF12325 TMF_TATA_bd: TATA ele 31.7 5E+02 0.011 25.4 10.6 33 563-595 21-53 (120)
256 cd01394 radB RadB. The archaea 31.7 29 0.00063 35.7 2.0 28 287-314 6-36 (218)
257 PLN00206 DEAD-box ATP-dependen 31.5 32 0.00069 40.8 2.5 24 289-314 152-175 (518)
258 PHA02624 large T antigen; Prov 31.5 36 0.00077 41.6 2.9 27 288-314 420-448 (647)
259 PRK09270 nucleoside triphospha 31.5 37 0.0008 35.6 2.8 36 279-314 14-50 (229)
260 PRK07261 topology modulation p 31.0 20 0.00044 36.0 0.7 15 300-314 3-17 (171)
261 PF00158 Sigma54_activat: Sigm 30.9 37 0.0008 34.4 2.5 94 293-403 18-123 (168)
262 TIGR03158 cas3_cyano CRISPR-as 30.6 36 0.00079 38.3 2.7 25 290-314 7-31 (357)
263 TIGR01817 nifA Nif-specific re 30.5 27 0.00058 41.4 1.7 46 263-314 191-236 (534)
264 PRK06995 flhF flagellar biosyn 30.5 18 0.00039 42.8 0.3 17 298-314 257-273 (484)
265 TIGR01313 therm_gnt_kin carboh 30.3 20 0.00042 35.1 0.4 14 300-313 1-14 (163)
266 cd01428 ADK Adenylate kinase ( 30.3 21 0.00046 35.5 0.7 15 300-314 2-16 (194)
267 TIGR02746 TraC-F-type type-IV 30.0 19 0.0004 44.7 0.3 18 297-314 430-447 (797)
268 PRK06696 uridine kinase; Valid 29.9 43 0.00093 35.0 2.9 29 286-314 8-39 (223)
269 TIGR02655 circ_KaiC circadian 29.9 64 0.0014 38.0 4.6 27 287-313 8-37 (484)
270 PRK08118 topology modulation p 29.8 22 0.00048 35.7 0.7 14 300-313 4-17 (167)
271 CHL00176 ftsH cell division pr 29.6 21 0.00046 43.7 0.7 47 263-314 178-233 (638)
272 COG0630 VirB11 Type IV secreto 29.5 18 0.0004 40.2 0.1 19 296-314 142-160 (312)
273 PRK11546 zraP zinc resistance 29.4 2.1E+02 0.0046 28.8 7.4 29 562-590 51-79 (143)
274 CHL00181 cbbX CbbX; Provisiona 29.3 22 0.00048 39.0 0.7 15 300-314 62-76 (287)
275 KOG2751 Beclin-like protein [S 29.2 7.9E+02 0.017 29.1 12.8 89 492-594 84-172 (447)
276 COG1125 OpuBA ABC-type proline 29.1 20 0.00043 39.5 0.3 26 510-543 185-210 (309)
277 TIGR02322 phosphon_PhnN phosph 28.9 20 0.00044 35.6 0.3 16 299-314 3-18 (179)
278 PRK11664 ATP-dependent RNA hel 28.7 36 0.00077 42.9 2.4 33 279-314 5-37 (812)
279 TIGR02880 cbbX_cfxQ probable R 28.6 21 0.00045 39.1 0.3 16 299-314 60-75 (284)
280 cd02020 CMPK Cytidine monophos 28.6 24 0.00052 33.3 0.7 14 300-313 2-15 (147)
281 TIGR01650 PD_CobS cobaltochela 28.5 42 0.00092 37.9 2.7 18 297-314 64-81 (327)
282 cd01124 KaiC KaiC is a circadi 28.5 26 0.00056 34.6 1.0 15 300-314 2-16 (187)
283 TIGR03877 thermo_KaiC_1 KaiC d 28.4 37 0.00081 35.8 2.2 27 287-313 8-37 (237)
284 PRK11889 flhF flagellar biosyn 28.4 44 0.00095 39.1 2.8 17 298-314 242-258 (436)
285 PF00931 NB-ARC: NB-ARC domain 28.2 51 0.0011 35.0 3.1 30 285-314 5-36 (287)
286 PF04156 IncA: IncA protein; 28.1 5.8E+02 0.013 25.8 10.7 17 567-583 90-106 (191)
287 KOG0354 DEAD-box like helicase 28.1 36 0.00078 42.2 2.2 25 286-313 68-92 (746)
288 smart00488 DEXDc2 DEAD-like he 28.0 48 0.001 36.4 3.0 36 273-314 9-44 (289)
289 smart00489 DEXDc3 DEAD-like he 28.0 48 0.001 36.4 3.0 36 273-314 9-44 (289)
290 PRK08233 hypothetical protein; 28.0 25 0.00053 34.6 0.7 16 299-314 5-20 (182)
291 TIGR03744 traC_PFL_4706 conjug 27.9 21 0.00046 45.3 0.2 20 295-314 473-492 (893)
292 cd01386 MYSc_type_XVIII Myosin 27.9 44 0.00096 41.9 3.0 35 279-314 68-103 (767)
293 PF08477 Miro: Miro-like prote 27.8 20 0.00043 32.6 0.0 15 300-314 2-16 (119)
294 KOG1803 DNA helicase [Replicat 27.8 43 0.00093 40.6 2.7 17 298-314 202-218 (649)
295 cd01379 MYSc_type_III Myosin m 27.4 44 0.00095 41.1 2.8 35 279-314 68-103 (653)
296 TIGR03881 KaiC_arch_4 KaiC dom 27.4 37 0.00081 35.2 1.9 28 287-314 7-37 (229)
297 PRK06217 hypothetical protein; 27.1 26 0.00056 35.3 0.7 15 300-314 4-18 (183)
298 PRK15429 formate hydrogenlyase 27.1 33 0.00073 42.0 1.7 43 265-313 373-415 (686)
299 KOG0987 DNA helicase PIF1/RRM3 27.0 79 0.0017 38.0 4.8 36 274-314 119-154 (540)
300 PF10458 Val_tRNA-synt_C: Valy 27.0 4.1E+02 0.0088 22.8 8.2 23 564-586 3-25 (66)
301 PF04201 TPD52: Tumour protein 26.9 1.6E+02 0.0035 30.2 6.2 29 643-671 27-55 (162)
302 TIGR00643 recG ATP-dependent D 26.9 45 0.00098 40.6 2.8 40 271-314 234-273 (630)
303 TIGR01389 recQ ATP-dependent D 26.9 39 0.00084 40.6 2.2 25 288-314 21-45 (591)
304 TIGR02397 dnaX_nterm DNA polym 26.7 45 0.00097 36.8 2.5 24 291-314 29-53 (355)
305 PRK01172 ski2-like helicase; P 26.7 41 0.00088 41.1 2.4 21 291-313 33-53 (674)
306 PF00485 PRK: Phosphoribulokin 26.6 23 0.0005 36.0 0.2 15 300-314 2-16 (194)
307 PRK10246 exonuclease subunit S 26.6 66 0.0014 41.7 4.3 17 297-313 30-46 (1047)
308 TIGR02688 conserved hypothetic 26.5 32 0.00069 40.3 1.3 47 288-337 202-252 (449)
309 PF05911 DUF869: Plant protein 26.4 3.1E+02 0.0067 34.7 9.7 48 641-688 669-716 (769)
310 COG5019 CDC3 Septin family pro 26.3 35 0.00076 39.1 1.6 18 294-311 20-37 (373)
311 TIGR03238 dnd_assoc_3 dnd syst 26.3 33 0.00071 40.8 1.4 27 289-315 18-50 (504)
312 PF14532 Sigma54_activ_2: Sigm 26.1 31 0.00067 33.1 1.0 21 294-314 18-38 (138)
313 cd01983 Fer4_NifH The Fer4_Nif 26.0 26 0.00057 29.9 0.4 15 300-314 2-16 (99)
314 TIGR00231 small_GTP small GTP- 25.6 24 0.00052 32.3 0.1 16 299-314 3-18 (161)
315 KOG0804 Cytoplasmic Zn-finger 25.6 4.2E+02 0.009 31.5 9.8 17 671-687 429-445 (493)
316 PRK12724 flagellar biosynthesi 25.5 47 0.001 38.9 2.4 17 298-314 224-240 (432)
317 PRK14531 adenylate kinase; Pro 25.5 29 0.00064 35.0 0.7 15 299-313 4-18 (183)
318 COG3829 RocR Transcriptional r 25.5 47 0.001 39.9 2.4 43 262-310 239-281 (560)
319 PRK14721 flhF flagellar biosyn 25.5 26 0.00057 40.8 0.4 18 297-314 191-208 (420)
320 TIGR00602 rad24 checkpoint pro 25.4 40 0.00086 41.4 1.9 16 299-314 112-127 (637)
321 PRK11034 clpA ATP-dependent Cl 25.4 52 0.0011 41.2 2.9 18 297-314 488-505 (758)
322 KOG0340 ATP-dependent RNA heli 25.3 75 0.0016 36.6 3.8 30 286-317 35-64 (442)
323 KOG1547 Septin CDC10 and relat 25.3 59 0.0013 35.7 2.9 21 294-314 43-63 (336)
324 COG1126 GlnQ ABC-type polar am 25.3 22 0.00049 38.2 -0.2 15 300-314 31-45 (240)
325 PF10412 TrwB_AAD_bind: Type I 25.3 23 0.0005 40.4 -0.1 17 298-314 16-32 (386)
326 CHL00195 ycf46 Ycf46; Provisio 25.3 27 0.00058 41.5 0.4 17 298-314 260-276 (489)
327 PRK06305 DNA polymerase III su 25.1 45 0.00097 39.1 2.2 41 266-314 15-56 (451)
328 KOG0729 26S proteasome regulat 25.1 34 0.00074 37.9 1.1 20 295-314 207-228 (435)
329 PF13851 GAS: Growth-arrest sp 25.0 7.6E+02 0.016 26.0 11.0 24 565-588 27-50 (201)
330 cd02023 UMPK Uridine monophosp 24.9 25 0.00055 35.6 0.1 15 300-314 2-16 (198)
331 KOG0953 Mitochondrial RNA heli 24.9 31 0.00068 41.5 0.9 40 299-338 193-238 (700)
332 TIGR03263 guanyl_kin guanylate 24.9 28 0.0006 34.5 0.4 16 299-314 3-18 (180)
333 KOG0963 Transcription factor/C 24.9 2.7E+02 0.0058 34.2 8.4 20 565-584 249-268 (629)
334 TIGR02173 cyt_kin_arch cytidyl 24.8 30 0.00066 33.6 0.7 16 299-314 2-17 (171)
335 TIGR00064 ftsY signal recognit 24.8 29 0.00064 37.8 0.6 17 298-314 73-89 (272)
336 TIGR01360 aden_kin_iso1 adenyl 24.6 32 0.00068 34.1 0.8 16 299-314 5-20 (188)
337 PF11221 Med21: Subunit 21 of 24.6 2.2E+02 0.0047 28.3 6.6 35 652-686 104-138 (144)
338 PRK14962 DNA polymerase III su 24.6 48 0.001 39.1 2.4 42 265-314 11-53 (472)
339 PRK14970 DNA polymerase III su 24.5 54 0.0012 36.8 2.6 27 288-314 29-56 (367)
340 TIGR03689 pup_AAA proteasome A 24.5 27 0.00059 41.7 0.3 16 299-314 218-233 (512)
341 cd00820 PEPCK_HprK Phosphoenol 24.4 29 0.00062 33.1 0.4 16 299-314 17-32 (107)
342 PRK00300 gmk guanylate kinase; 24.4 29 0.00063 35.2 0.4 18 297-314 5-22 (205)
343 PF12774 AAA_6: Hydrolytic ATP 24.2 41 0.00089 35.9 1.6 41 297-337 32-83 (231)
344 PRK06645 DNA polymerase III su 24.1 51 0.0011 39.4 2.4 23 292-314 37-60 (507)
345 PRK14723 flhF flagellar biosyn 24.0 29 0.00063 43.4 0.4 17 298-314 186-202 (767)
346 KOG0739 AAA+-type ATPase [Post 24.0 33 0.00072 38.6 0.8 42 298-339 167-225 (439)
347 TIGR00929 VirB4_CagE type IV s 23.9 28 0.00062 42.9 0.3 18 297-314 434-451 (785)
348 PRK12726 flagellar biosynthesi 23.8 29 0.00062 40.3 0.3 17 298-314 207-223 (407)
349 PRK11020 hypothetical protein; 23.8 3.2E+02 0.0069 26.7 7.1 30 644-673 30-59 (118)
350 PHA01747 putative ATP-dependen 23.7 29 0.00064 40.0 0.4 35 280-314 173-207 (425)
351 PF10923 DUF2791: P-loop Domai 23.6 54 0.0012 38.3 2.4 27 288-314 40-66 (416)
352 PRK13767 ATP-dependent helicas 23.5 39 0.00084 42.9 1.4 23 290-314 42-64 (876)
353 TIGR02236 recomb_radA DNA repa 23.5 56 0.0012 35.8 2.5 28 287-314 82-112 (310)
354 PTZ00014 myosin-A; Provisional 23.5 62 0.0013 41.0 3.1 34 280-314 166-200 (821)
355 PRK04040 adenylate kinase; Pro 23.4 34 0.00073 35.2 0.7 16 299-314 4-19 (188)
356 TIGR01074 rep ATP-dependent DN 23.4 36 0.00079 41.3 1.1 21 296-316 13-33 (664)
357 PRK09039 hypothetical protein; 23.4 4.7E+02 0.01 29.8 9.7 18 648-665 168-185 (343)
358 PRK06851 hypothetical protein; 23.2 41 0.0009 38.5 1.4 27 288-314 21-47 (367)
359 COG0467 RAD55 RecA-superfamily 23.1 52 0.0011 35.1 2.1 25 289-313 12-39 (260)
360 KOG0651 26S proteasome regulat 23.1 52 0.0011 37.3 2.1 54 260-313 124-182 (388)
361 PRK10689 transcription-repair 22.9 59 0.0013 42.6 2.8 38 272-313 600-637 (1147)
362 PF03193 DUF258: Protein of un 22.8 33 0.00071 34.9 0.5 25 288-314 28-52 (161)
363 PRK14532 adenylate kinase; Pro 22.8 36 0.00078 34.2 0.8 15 299-313 2-16 (188)
364 PRK10867 signal recognition pa 22.8 67 0.0015 37.6 3.0 17 298-314 101-117 (433)
365 COG1136 SalX ABC-type antimicr 22.8 29 0.00063 37.2 0.1 15 300-314 34-48 (226)
366 PRK06762 hypothetical protein; 22.7 37 0.0008 33.3 0.8 15 299-313 4-18 (166)
367 TIGR02768 TraA_Ti Ti-type conj 22.6 46 0.001 41.5 1.8 26 288-314 360-385 (744)
368 TIGR02639 ClpA ATP-dependent C 22.5 45 0.00098 41.4 1.7 30 287-316 193-222 (731)
369 TIGR02639 ClpA ATP-dependent C 22.5 60 0.0013 40.3 2.7 17 298-314 485-501 (731)
370 PRK10078 ribose 1,5-bisphospho 22.4 31 0.00068 34.8 0.2 16 299-314 4-19 (186)
371 PRK10820 DNA-binding transcrip 22.3 47 0.001 39.6 1.7 47 262-314 198-244 (520)
372 PRK11057 ATP-dependent DNA hel 22.2 57 0.0012 39.5 2.4 24 289-314 34-57 (607)
373 PF04111 APG6: Autophagy prote 22.2 9.6E+02 0.021 26.9 11.8 77 562-690 40-116 (314)
374 PRK05342 clpX ATP-dependent pr 22.1 38 0.00083 39.3 0.9 18 297-314 108-125 (412)
375 COG0464 SpoVK ATPases of the A 22.0 42 0.0009 39.3 1.2 20 295-314 274-293 (494)
376 PF08298 AAA_PrkA: PrkA AAA do 22.0 1.6E+02 0.0035 33.8 5.7 60 269-333 62-142 (358)
377 PRK13889 conjugal transfer rel 21.9 47 0.001 42.8 1.7 28 287-315 353-380 (988)
378 PRK14729 miaA tRNA delta(2)-is 21.9 41 0.00089 37.5 1.0 16 298-313 5-20 (300)
379 PF04548 AIG1: AIG1 family; I 21.8 34 0.00074 35.5 0.4 16 299-314 2-17 (212)
380 COG0419 SbcC ATPase involved i 21.8 1.1E+02 0.0023 39.1 4.7 36 296-333 24-66 (908)
381 TIGR03319 YmdA_YtgF conserved 21.8 9.2E+02 0.02 29.1 12.2 14 674-687 149-162 (514)
382 PF12709 Kinetocho_Slk19: Cent 21.7 2.6E+02 0.0057 26.0 5.9 40 643-682 47-86 (87)
383 PRK14952 DNA polymerase III su 21.7 59 0.0013 39.5 2.4 41 266-314 11-52 (584)
384 TIGR00382 clpX endopeptidase C 21.7 36 0.00078 39.6 0.6 17 298-314 117-133 (413)
385 PF04977 DivIC: Septum formati 21.6 2.5E+02 0.0055 24.1 5.8 38 646-684 25-62 (80)
386 cd00071 GMPK Guanosine monopho 21.5 32 0.0007 33.3 0.1 15 300-314 2-16 (137)
387 PRK12704 phosphodiesterase; Pr 21.4 8.8E+02 0.019 29.3 11.9 15 740-754 243-257 (520)
388 KOG4466 Component of histone d 21.2 1.1E+03 0.024 26.4 11.5 43 655-697 93-136 (291)
389 PRK09302 circadian clock prote 21.2 58 0.0013 38.4 2.2 29 286-314 17-48 (509)
390 TIGR03752 conj_TIGR03752 integ 21.0 5.8E+02 0.013 30.5 10.0 19 567-585 75-93 (472)
391 PRK05896 DNA polymerase III su 21.0 57 0.0012 39.8 2.1 41 266-314 14-55 (605)
392 KOG0652 26S proteasome regulat 21.0 43 0.00092 37.1 0.9 14 299-312 207-220 (424)
393 cd02027 APSK Adenosine 5'-phos 21.0 40 0.00087 33.0 0.7 15 300-314 2-16 (149)
394 PRK14530 adenylate kinase; Pro 20.9 40 0.00087 34.9 0.7 16 299-314 5-20 (215)
395 PF01926 MMR_HSR1: 50S ribosom 20.9 32 0.0007 31.5 -0.0 15 300-314 2-16 (116)
396 PRK13721 conjugal transfer ATP 20.8 35 0.00077 43.0 0.3 18 297-314 449-466 (844)
397 TIGR01613 primase_Cterm phage/ 20.8 61 0.0013 35.5 2.1 51 268-333 48-101 (304)
398 TIGR01425 SRP54_euk signal rec 20.7 67 0.0015 37.6 2.5 18 297-314 100-117 (429)
399 TIGR02767 TraG-Ti Ti-type conj 20.6 47 0.001 40.7 1.2 16 299-314 213-228 (623)
400 PRK13531 regulatory ATPase Rav 20.5 61 0.0013 38.7 2.1 29 284-314 28-56 (498)
401 COG1422 Predicted membrane pro 20.5 1.7E+02 0.0037 31.0 5.1 29 638-666 65-93 (201)
402 TIGR01351 adk adenylate kinase 20.4 42 0.00092 34.5 0.7 14 300-313 2-15 (210)
403 cd03240 ABC_Rad50 The catalyti 20.4 37 0.0008 35.2 0.3 16 299-314 24-39 (204)
404 PRK14527 adenylate kinase; Pro 20.4 44 0.00096 33.8 0.9 17 298-314 7-23 (191)
405 PRK03839 putative kinase; Prov 20.4 42 0.0009 33.5 0.6 14 300-313 3-16 (180)
406 TIGR01447 recD exodeoxyribonuc 20.4 52 0.0011 40.0 1.6 24 289-314 154-177 (586)
407 KOG0971 Microtubule-associated 20.3 6.5E+02 0.014 32.5 10.5 22 567-588 405-426 (1243)
408 PRK13853 type IV secretion sys 20.3 32 0.0007 43.0 -0.2 19 296-314 425-443 (789)
409 TIGR03345 VI_ClpV1 type VI sec 20.3 76 0.0017 40.3 3.0 17 298-314 597-613 (852)
410 PRK14960 DNA polymerase III su 20.3 63 0.0014 40.0 2.2 41 266-314 13-54 (702)
411 PF07888 CALCOCO1: Calcium bin 20.3 7.5E+02 0.016 30.2 10.9 41 646-686 411-451 (546)
412 COG3883 Uncharacterized protei 20.3 1.6E+02 0.0035 32.5 5.0 136 562-697 70-217 (265)
413 PRK04301 radA DNA repair and r 20.0 76 0.0016 35.1 2.6 28 287-314 89-119 (317)
No 1
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.5e-91 Score=788.56 Aligned_cols=361 Identities=43% Similarity=0.616 Sum_probs=325.4
Q ss_pred CCCCeEEEEEcCCCCchhhhcCCceEEEEecCc-eeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHH
Q 003413 209 SGSRILVFVRLRPMSKKEKESGSRCCVRIVNKR-DVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTAD 287 (822)
Q Consensus 209 ~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~-~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~p 287 (822)
...+|+|+|||||++..+...+...++.++... .+.+..+... ....++.|+||.||+++++|++||+.++.|
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~ 76 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAG------IEGKPKSFTFDAVFDSDSTQDDVYQETVAP 76 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCccc------ccCCCCCceeeeeecCCCCHHHHHHHHhHH
Confidence 356899999999999999888887777776443 3333332211 124567899999999999999999999999
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceeeccc-CCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCCCC
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTMLGT-IENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGR 366 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM~G~-~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p~~ 366 (822)
+|++||+|||+||||||||||||||||+|. ++..|||||+|++||.+|........|.|+|||+|||||.|+|||++..
T Consensus 77 lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~ 156 (574)
T KOG4280|consen 77 LVESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVN 156 (574)
T ss_pred HHHHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccC
Confidence 999999999999999999999999999999 6668999999999999999887666899999999999999999999876
Q ss_pred --CceEeeCC-CCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEee
Q 003413 367 --PLVLREDK-QGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGK 443 (822)
Q Consensus 367 --~L~ired~-~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~Sk 443 (822)
.+.+++++ .|+||+||+++.|.++++++.+|..|.++|.+++|.||..|||||+||+|+|++......+....+.|+
T Consensus 157 ~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~r 236 (574)
T KOG4280|consen 157 PKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSK 236 (574)
T ss_pred cCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccce
Confidence 79999998 599999999999999999999999999999999999999999999999999999443332333567899
Q ss_pred EEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCCC-CCCccCchhhhhhhhccCCCceeeEEEeeCCC
Q 003413 444 LSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKK-HIPYRNSKLTQLLKDSLGGACNTVMIANISPC 522 (822)
Q Consensus 444 L~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~-hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs 522 (822)
|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++++ ||||||||||+||||||||||+|+|||||+|+
T Consensus 237 lnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~ 316 (574)
T KOG4280|consen 237 LNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPS 316 (574)
T ss_pred eeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCch
Confidence 99999999999999999999999999999999999999999999887 99999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhhcccccccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 523 NLSFGETQNTLHWADRAKEIRTKEGEANEETLQVPDSGTDQAKLLLELQKENRELRVQMARQQ 585 (822)
Q Consensus 523 ~~~~eETLsTLrFA~Rak~Iknk~~~~ne~~~~~~~~~~d~~~li~eLq~Ei~~Lr~eL~~~q 585 (822)
..+++||++||+||+|||.|+|+|+ +|+++. ...+++|++||+.||.+|+...
T Consensus 317 ~~~~~ETlsTLrfA~Rak~I~nk~~-ined~~---------~~~~~~lq~ei~~Lk~~l~~~~ 369 (574)
T KOG4280|consen 317 SDNYEETLSTLRFAQRAKAIKNKPV-INEDPK---------DALLRELQEEIERLKKELDPGG 369 (574)
T ss_pred hhhhHHHHHHHHHHHHHHHhhcccc-ccCCcc---------hhhHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999995 777764 4689999999999999987643
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.9e-90 Score=796.94 Aligned_cols=355 Identities=39% Similarity=0.613 Sum_probs=319.5
Q ss_pred CCCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCC-------CCchhHHhh
Q 003413 210 GSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPD-------STSQHEVYS 282 (822)
Q Consensus 210 ~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~-------~asQeeVF~ 282 (822)
+..|+|+||||||+.+|....+.|+|.+.++.+.+..+.... ....|+||++||. .++|..||+
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k---------~~~~FtfD~SYWS~d~edPhfAsQ~qVYe 73 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSK---------DAPKFTFDYSYWSHDSEDPHFASQKQVYE 73 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcc---------cCCceecceeeecCCCCCCchhhHHHHHH
Confidence 567999999999999999888888887776554443332221 2345999999965 478999999
Q ss_pred hhHHHHHHHHHcCCCceeeeeccCCCCcceeecccC--CCCchHHHHHHHHHHhhhhc-CCCCcEEEEEEEEEEecceee
Q 003413 283 RTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTI--ENPGVMVLAIKDLFTKIRQR-SCDGNHVVHLSYLEVYNETVR 359 (822)
Q Consensus 283 ~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~--e~~GIIpRal~~LF~~i~~~-~~~~~~~V~vS~lEIYNE~V~ 359 (822)
.++.++++.+++|||+||||||||||||||||+|.. +++|||||++++||.+|... ..+..|.|.|||+|||||+|+
T Consensus 74 dlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVr 153 (1221)
T KOG0245|consen 74 DLGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVR 153 (1221)
T ss_pred HHhHHHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHH
Confidence 999999999999999999999999999999999987 88999999999999999764 345689999999999999999
Q ss_pred ecCC-CC--CCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCC
Q 003413 360 DLLS-PG--RPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASM 435 (822)
Q Consensus 360 DLL~-p~--~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~ 435 (822)
|||+ |. ..|.+||++. |+||.+|+.+.|+|+.|+..+|..|++.|++++|+||+.|||||+||+|++.+...+...
T Consensus 154 DLL~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~ 233 (1221)
T KOG0245|consen 154 DLLNAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDT 233 (1221)
T ss_pred HHhhCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccC
Confidence 9999 54 5799999987 999999999999999999999999999999999999999999999999999998766544
Q ss_pred c-eeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCC-------CCCCccCchhhhhhhhcc
Q 003413 436 N-IINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGK-------KHIPYRNSKLTQLLKDSL 507 (822)
Q Consensus 436 ~-~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~-------~hIPYRdSKLTrLLqDSL 507 (822)
+ ...++|||+|||||||||+..+|+.|+|+|||.+|||||++||+||+||++.. .+||||||.|||||+++|
T Consensus 234 ~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnL 313 (1221)
T KOG0245|consen 234 GLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENL 313 (1221)
T ss_pred CCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhc
Confidence 2 24688999999999999999999999999999999999999999999999732 389999999999999999
Q ss_pred CCCceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhhcccccccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 003413 508 GGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKEGEANEETLQVPDSGTDQAKLLLELQKENRELRVQMAR 583 (822)
Q Consensus 508 GGnskT~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk~~~~ne~~~~~~~~~~d~~~li~eLq~Ei~~Lr~eL~~ 583 (822)
||||||+|||+|||++.||+|||+|||||+|||.|+|.++ +||++. +++|++|++||.+||..|..
T Consensus 314 GGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~av-VNEdpn---------aKLIRELreEv~rLksll~~ 379 (1221)
T KOG0245|consen 314 GGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAV-VNEDPN---------AKLIRELREEVARLKSLLRA 379 (1221)
T ss_pred CCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccce-eCCCcc---------HHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999995 788764 59999999999999987643
No 3
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-89 Score=802.70 Aligned_cols=361 Identities=36% Similarity=0.598 Sum_probs=323.3
Q ss_pred CCCCCeEEEEEcCCCCchhhhcCCceEEEEec-CceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHH
Q 003413 208 PSGSRILVFVRLRPMSKKEKESGSRCCVRIVN-KRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTA 286 (822)
Q Consensus 208 ~~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~-~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~ 286 (822)
+.+.||+|+|||||++.+|....+..+|.+++ +..|.+...-.. ..-.+.|+||+||+|.+.|.+||+.++.
T Consensus 46 e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~s-------k~~~k~ftFDkVFGpes~Q~d~Y~~~v~ 118 (1041)
T KOG0243|consen 46 EKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIAS-------KQIDKTFTFDKVFGPESQQEDLYDQAVS 118 (1041)
T ss_pred CCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEeccccc-------ccccceeecceeeCcchhHHHHHHHHHH
Confidence 45789999999999999999988888888887 444666432111 1136899999999999999999999999
Q ss_pred HHHHHHHcCCCceeeeeccCCCCcceeecc--------cCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEeccee
Q 003413 287 DLVEAVLQGRNGSVFCYGATGAGKTYTMLG--------TIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETV 358 (822)
Q Consensus 287 pLV~svL~GyN~tIfAYGQTGSGKTyTM~G--------~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V 358 (822)
|+|+.|+.|||||||||||||+||||||.| .+.+.|||||++.+||+.+.... ..|.|+|||||+|||.|
T Consensus 119 p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~--~EYsvKVSfLELYNEEl 196 (1041)
T KOG0243|consen 119 PIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG--AEYSVKVSFLELYNEEL 196 (1041)
T ss_pred HHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC--CeEEEEEEehhhhhHHH
Confidence 999999999999999999999999999999 46678999999999999987653 58999999999999999
Q ss_pred eecCCCCC----CceEeeCC------CCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEE
Q 003413 359 RDLLSPGR----PLVLREDK------QGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEY 428 (822)
Q Consensus 359 ~DLL~p~~----~L~ired~------~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~ 428 (822)
+|||++.. .+.+.+++ +|++|.||.++.|.++.|++.+|.+|...|++++|.||..|||||+||+|+|..
T Consensus 197 ~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhi 276 (1041)
T KOG0243|consen 197 TDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHI 276 (1041)
T ss_pred HHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEE
Confidence 99999753 34444444 489999999999999999999999999999999999999999999999999998
Q ss_pred EeecCCCceeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhccC
Q 003413 429 RVKDASMNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLG 508 (822)
Q Consensus 429 ~~~~~~~~~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDSLG 508 (822)
+..+..+....+.|||+||||||||-+..+|+.+.|.+|++.||+||++||+||+||+++..|||||+||||||||||||
T Consensus 277 ke~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLG 356 (1041)
T KOG0243|consen 277 KENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLG 356 (1041)
T ss_pred ecCCCcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhC
Confidence 87776665567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhhcccccccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 509 GACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKEGEANEETLQVPDSGTDQAKLLLELQKENRELRVQMARQQQ 586 (822)
Q Consensus 509 GnskT~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk~~~~ne~~~~~~~~~~d~~~li~eLq~Ei~~Lr~eL~~~q~ 586 (822)
|.+||+|||||||+..+++||++||.||.|||+|+|+|. +|... .-+.++.+|-.||++||.+|.....
T Consensus 357 GkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPe-vNQkl--------~K~~llKd~~~EIerLK~dl~AaRe 425 (1041)
T KOG0243|consen 357 GKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPE-VNQKL--------MKKTLLKDLYEEIERLKRDLAAARE 425 (1041)
T ss_pred CCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCc-cchHH--------HHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 999999999999999999999999999999999999995 44322 1257899999999999999876543
No 4
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=5.7e-83 Score=755.78 Aligned_cols=373 Identities=36% Similarity=0.536 Sum_probs=314.6
Q ss_pred CCCCCCcchhHHhhhccCCchhhhhcccccCcchhhhccCcccccCCCCCCCCCeEEEEEcCCCCchhhhcCCceEEEEe
Q 003413 159 CPRKANVTTTVARKLSMGSSVAQTELKGVTGDKNMQELEKPEAVLGKHVPSGSRILVFVRLRPMSKKEKESGSRCCVRIV 238 (822)
Q Consensus 159 ~~~~~~~~~~~~~k~~~~~~~~~~e~~~~~g~~~~~~l~~~~~~~~~~~~~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~ 238 (822)
.|+.+|.++++.||++...... +....++|+|||||||++..| .+..+++ ..
T Consensus 71 ~p~~pp~s~~l~rk~~~~~~~e-------------------------n~~~ds~VkV~VRVRPl~~~E--~g~~iV~-~~ 122 (1320)
T PLN03188 71 LPPRPPSSNPLKRKLSAETAPE-------------------------NGVSDSGVKVIVRMKPLNKGE--EGEMIVQ-KM 122 (1320)
T ss_pred CCCCCCCCcchhcccccccccc-------------------------ccCCCCCeEEEEEcCCCCCcc--CCCeeEE-Ec
Confidence 5677778889999988765433 112357899999999999876 3444333 33
Q ss_pred cCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeecccC
Q 003413 239 NKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTI 318 (822)
Q Consensus 239 ~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~ 318 (822)
.+..+.+ .++.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|+.
T Consensus 123 s~dsl~I---------------~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~ 187 (1320)
T PLN03188 123 SNDSLTI---------------NGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPA 187 (1320)
T ss_pred CCCeEEE---------------eCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCC
Confidence 4444433 2468999999999999999999999999999999999999999999999999999963
Q ss_pred ----------CCCchHHHHHHHHHHhhhhc-----CCCCcEEEEEEEEEEecceeeecCCCC-CCceEeeCCC-CeEecC
Q 003413 319 ----------ENPGVMVLAIKDLFTKIRQR-----SCDGNHVVHLSYLEVYNETVRDLLSPG-RPLVLREDKQ-GILAAG 381 (822)
Q Consensus 319 ----------e~~GIIpRal~~LF~~i~~~-----~~~~~~~V~vS~lEIYNE~V~DLL~p~-~~L~ired~~-Gv~V~g 381 (822)
.++|||||++++||..+... .....|.|+|||+|||||+|||||++. ..+.|+++.. |++|.|
T Consensus 188 ~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~k~L~IRED~kgGv~VeG 267 (1320)
T PLN03188 188 NGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQKNLQIREDVKSGVYVEN 267 (1320)
T ss_pred CcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccccccCCceEEEcCCCCeEeCC
Confidence 46899999999999998642 124478999999999999999999986 5799999965 899999
Q ss_pred cEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCC-CceeeEEeeEEEeecCCCcccccccc
Q 003413 382 LTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDAS-MNIINRVGKLSLIDLAGSERALATDQ 460 (822)
Q Consensus 382 Ltev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~-~~~~~~~SkL~LVDLAGSER~~kt~~ 460 (822)
|+++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|+....... +......|+|+|||||||||...++.
T Consensus 268 LTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga 347 (1320)
T PLN03188 268 LTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGA 347 (1320)
T ss_pred CeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCc
Confidence 99999999999999999999999999999999999999999999987654321 12234679999999999999999999
Q ss_pred hhhhhHHHHhhhhhHHHHHHHHHHHhc-----CCCCCCccCchhhhhhhhccCCCceeeEEEeeCCCCCCHHHHHHHHHH
Q 003413 461 RTLRSLEGANINRSLLALSSCINALVE-----GKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHW 535 (822)
Q Consensus 461 ~g~rlkE~~~INkSLsaLg~VI~ALa~-----~~~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~~~~eETLsTLrF 535 (822)
.|.+++|+.+||+||++||+||.+|+. +..||||||||||+||||+|||||+|+|||||||+..+++||++||+|
T Consensus 348 ~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrF 427 (1320)
T PLN03188 348 AGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRF 427 (1320)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHH
Confidence 999999999999999999999999986 236999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcccccccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 536 ADRAKEIRTKEGEANEETLQVPDSGTDQAKLLLELQKENRELRVQMARQQ 585 (822)
Q Consensus 536 A~Rak~Iknk~~~~ne~~~~~~~~~~d~~~li~eLq~Ei~~Lr~eL~~~q 585 (822)
|+||+.|+|+|. +|+... ..+..|++.|.+|+.+|..++
T Consensus 428 AsRAK~IKNkpv-vNe~~~----------~~vn~LrelIr~Lk~EL~rLK 466 (1320)
T PLN03188 428 AQRAKAIKNKAV-VNEVMQ----------DDVNFLREVIRQLRDELQRVK 466 (1320)
T ss_pred HHHHhhcCccce-eccchh----------hhHHHHHHHHHHHHHHHHHHH
Confidence 999999999995 554321 223344455555555554443
No 5
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2e-82 Score=692.78 Aligned_cols=331 Identities=58% Similarity=0.878 Sum_probs=302.7
Q ss_pred CeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcch--hhhhcccCCeeeEeccccCCCCchhHHhhhhHHHHH
Q 003413 212 RILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHD--YLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADLV 289 (822)
Q Consensus 212 ~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~--~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pLV 289 (822)
+|+|||||||+++.|...+...||.+.++..+.+.+...... .........+.|.||+||+++++|++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 599999999999999889999999998887666644322111 011123457899999999999999999999999999
Q ss_pred HHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCC-CCCc
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSP-GRPL 368 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p-~~~L 368 (822)
+++++|||+||||||||||||||||+|+.+++|||||++++||+.+........|.|.+||+|||||+|+|||++ ..++
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l 160 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPL 160 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCc
Confidence 999999999999999999999999999999999999999999999988776788999999999999999999998 5789
Q ss_pred eEeeCC-CCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEeeEEEe
Q 003413 369 VLREDK-QGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKLSLI 447 (822)
Q Consensus 369 ~ired~-~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~SkL~LV 447 (822)
.+++++ +|++|.|++++.|.|++|++.+|+.|.++|++++|.+|..|||||+||+|.|.+.............|+|+||
T Consensus 161 ~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~V 240 (338)
T cd01370 161 ELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLI 240 (338)
T ss_pred eEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEE
Confidence 999998 5899999999999999999999999999999999999999999999999999988765433334678999999
Q ss_pred ecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCC---CCCCccCchhhhhhhhccCCCceeeEEEeeCCCCC
Q 003413 448 DLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGK---KHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNL 524 (822)
Q Consensus 448 DLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~---~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~~ 524 (822)
|||||||..+++..|.+++|+.+||+||++|++||.+|+.++ .||||||||||+||+|+|||||+|+||+||||+..
T Consensus 241 DLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~ 320 (338)
T cd01370 241 DLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSS 320 (338)
T ss_pred ECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchh
Confidence 999999999999999999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhh
Q 003413 525 SFGETQNTLHWADRAKEI 542 (822)
Q Consensus 525 ~~eETLsTLrFA~Rak~I 542 (822)
+++||++||+||+|||+|
T Consensus 321 ~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 321 HYEETHNTLKYANRAKNI 338 (338)
T ss_pred hHHHHHHHHHHHHHhccC
Confidence 999999999999999987
No 6
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-82 Score=719.08 Aligned_cols=361 Identities=40% Similarity=0.612 Sum_probs=323.2
Q ss_pred CCCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCC-------CCchhHHhh
Q 003413 210 GSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPD-------STSQHEVYS 282 (822)
Q Consensus 210 ~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~-------~asQeeVF~ 282 (822)
..+|+|+|||||++.+|.+....|+|.+...+.+ ++.+...+..- ....+++|.||++|++ .+.|+.||+
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~v-l~~~pp~~~~~--~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~ 79 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTV-LHPPPPNHKIG--ESKGPKTFAFDHCFWSMDPESKNYAGQETVFK 79 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCcee-ecCCCcccccc--ccCCCceeecccccccCCccccccccchhHHH
Confidence 4689999999999999999888888888765544 44433222221 1256899999999975 368999999
Q ss_pred hhHHHHHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcC-CCCcEEEEEEEEEEecceeeec
Q 003413 283 RTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRS-CDGNHVVHLSYLEVYNETVRDL 361 (822)
Q Consensus 283 ~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~-~~~~~~V~vS~lEIYNE~V~DL 361 (822)
.++..+|+++|+|||+||||||||||||||||+|..+.+|||||++..||..|.... ....|.|.|||+|||||++|||
T Consensus 80 ~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DL 159 (1714)
T KOG0241|consen 80 CLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDL 159 (1714)
T ss_pred hcchHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhh
Confidence 999999999999999999999999999999999999999999999999999997743 3457999999999999999999
Q ss_pred CCCC---CCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCC-Cc
Q 003413 362 LSPG---RPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDAS-MN 436 (822)
Q Consensus 362 L~p~---~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~-~~ 436 (822)
|+|+ ..+++++++- |+||.||++..|.|++|+..+|..|+++|++++|+||..|||||+||.|.|.+..-+.. +.
T Consensus 160 LdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~ 239 (1714)
T KOG0241|consen 160 LDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGH 239 (1714)
T ss_pred hCCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCc
Confidence 9986 4689999976 99999999999999999999999999999999999999999999999999998876642 22
Q ss_pred eeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcC------CCCCCccCchhhhhhhhccCCC
Q 003413 437 IINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEG------KKHIPYRNSKLTQLLKDSLGGA 510 (822)
Q Consensus 437 ~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~------~~hIPYRdSKLTrLLqDSLGGn 510 (822)
...+.|+|.|||||||||+.++++.|.|++|+.+||+||++||.||++|++. .++||||||.||+||||+||||
T Consensus 240 SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGN 319 (1714)
T KOG0241|consen 240 SGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGN 319 (1714)
T ss_pred chhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCC
Confidence 2357899999999999999999999999999999999999999999999973 3599999999999999999999
Q ss_pred ceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhhcccccccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 003413 511 CNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKEGEANEETLQVPDSGTDQAKLLLELQKENRELRVQMAR 583 (822)
Q Consensus 511 skT~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk~~~~ne~~~~~~~~~~d~~~li~eLq~Ei~~Lr~eL~~ 583 (822)
|+|+||+||||+.++|+||++|||||+|||+|+|.++ +|+++. +..+++|++|++.|+.+|.+
T Consensus 320 srTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~av-vNedpn---------arvirElReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 320 SRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAV-VNEDPN---------ARVIRELREEVEKLREQLEQ 382 (1714)
T ss_pred ceeEEEEEecccccchHHHHHHHHHHHHHHHhhcccc-ccCCch---------HHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999995 677653 57899999999999998865
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.1e-80 Score=678.87 Aligned_cols=319 Identities=41% Similarity=0.619 Sum_probs=287.8
Q ss_pred CCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHHHH
Q 003413 211 SRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADLVE 290 (822)
Q Consensus 211 ~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pLV~ 290 (822)
.+|+|+|||||+...|...+...||...+...+.+.. ...+.|.||+||+++++|++||+.++.|+|+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~------------~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~ 68 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHS------------HPPRMFTFDHVADSNTNQEDVFQSVGKPLVE 68 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeC------------CCCcEEeCCeEeCCCCCHHHHHHHHHHHHHH
Confidence 3799999999999999877777777766555554432 1257899999999999999999999999999
Q ss_pred HHHcCCCceeeeeccCCCCcceeecccCC--------CCchHHHHHHHHHHhhhhc----CCCCcEEEEEEEEEEeccee
Q 003413 291 AVLQGRNGSVFCYGATGAGKTYTMLGTIE--------NPGVMVLAIKDLFTKIRQR----SCDGNHVVHLSYLEVYNETV 358 (822)
Q Consensus 291 svL~GyN~tIfAYGQTGSGKTyTM~G~~e--------~~GIIpRal~~LF~~i~~~----~~~~~~~V~vS~lEIYNE~V 358 (822)
++++|||+||||||||||||||||+|+.. ++|||||++++||..+... .....|.|++||+|||||+|
T Consensus 69 ~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v 148 (337)
T cd01373 69 DCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQI 148 (337)
T ss_pred HHhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEe
Confidence 99999999999999999999999999753 5799999999999988653 23457899999999999999
Q ss_pred eecCCCC-CCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCc
Q 003413 359 RDLLSPG-RPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMN 436 (822)
Q Consensus 359 ~DLL~p~-~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~ 436 (822)
+|||++. ..+.++++.. |++|.|++++.|.|++|++++|..|..+|.+++|.+|..|||||+||+|.|..........
T Consensus 149 ~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~ 228 (337)
T cd01373 149 TDLLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASST 228 (337)
T ss_pred eeCCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCC
Confidence 9999876 5799999865 8999999999999999999999999999999999999999999999999998776544322
Q ss_pred eeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhc----CCCCCCccCchhhhhhhhccCCCce
Q 003413 437 IINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVE----GKKHIPYRNSKLTQLLKDSLGGACN 512 (822)
Q Consensus 437 ~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~----~~~hIPYRdSKLTrLLqDSLGGnsk 512 (822)
....|+|+|||||||||...++..|.+++|+.+||+||++|++||.+|++ +..||||||||||+||+|+|||||+
T Consensus 229 -~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~ 307 (337)
T cd01373 229 -NIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAK 307 (337)
T ss_pred -cEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCce
Confidence 35679999999999999999999999999999999999999999999985 3579999999999999999999999
Q ss_pred eeEEEeeCCCCCCHHHHHHHHHHHHHhhhh
Q 003413 513 TVMIANISPCNLSFGETQNTLHWADRAKEI 542 (822)
Q Consensus 513 T~mIa~ISPs~~~~eETLsTLrFA~Rak~I 542 (822)
|+|||||||+..+++||++||+||+|||.|
T Consensus 308 t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 308 TTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999987
No 8
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.1e-82 Score=737.42 Aligned_cols=328 Identities=50% Similarity=0.776 Sum_probs=299.4
Q ss_pred CCCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHHH
Q 003413 210 GSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADLV 289 (822)
Q Consensus 210 ~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pLV 289 (822)
..+|.|+|||||+++.|...+..+.+.+.++..+.......... ......|.||+||+++++|++||+..++|+|
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv 79 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPE-----KSKPEKYEFDRVFGEESTQEDVYERTTKPLL 79 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccc-----cccccceeeeeecCCCCCHHHHHHhccHHHH
Confidence 45799999999999987666777777666665544332111100 0115789999999999999999999999999
Q ss_pred HHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCCCCC-c
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGRP-L 368 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p~~~-L 368 (822)
++++.|||++|||||||||||||||.|..++|||||+++.+||+.|.... +..|.|.|||+|||||.|+|||+++.+ +
T Consensus 80 ~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~~~L 158 (675)
T KOG0242|consen 80 LSVLEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDGGDL 158 (675)
T ss_pred HHHhcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCCCCc
Confidence 99999999999999999999999999999999999999999999998876 889999999999999999999999765 9
Q ss_pred eEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEeeEEEe
Q 003413 369 VLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKLSLI 447 (822)
Q Consensus 369 ~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~SkL~LV 447 (822)
.+++|+. |++|.||++..|.|.++++.+|..|.++|+++.|.+|..|||||+||+|.|.+...... . ..|+|+||
T Consensus 159 ~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~-~---~~s~L~lI 234 (675)
T KOG0242|consen 159 RLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS-S---RVSKLNLI 234 (675)
T ss_pred eEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc-c---hhheehhh
Confidence 9999987 99999999999999999999999999999999999999999999999999999877654 1 67899999
Q ss_pred ecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCC--CCCCccCchhhhhhhhccCCCceeeEEEeeCCCCCC
Q 003413 448 DLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGK--KHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLS 525 (822)
Q Consensus 448 DLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~--~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~~~ 525 (822)
|||||||+..+++.|.|++||.+||+||++||+||++|++++ .||||||||||||||++|||||+|+|||||+|+..+
T Consensus 235 DLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~ 314 (675)
T KOG0242|consen 235 DLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSH 314 (675)
T ss_pred hhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhH
Confidence 999999999999999999999999999999999999999983 689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccc
Q 003413 526 FGETQNTLHWADRAKEIRTKEG 547 (822)
Q Consensus 526 ~eETLsTLrFA~Rak~Iknk~~ 547 (822)
|+||.+||+||+|||+|++++.
T Consensus 315 ~~eT~nTL~fAsrak~i~~~~~ 336 (675)
T KOG0242|consen 315 YEETKNTLKFASRAKEITTKAQ 336 (675)
T ss_pred HHHHHHHHHHHHHhhhcccccc
Confidence 9999999999999999999984
No 9
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3.8e-81 Score=694.27 Aligned_cols=357 Identities=37% Similarity=0.524 Sum_probs=315.9
Q ss_pred CCCCeEEEEEcCCCCchhhhcCCceEEEEec-CceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHH
Q 003413 209 SGSRILVFVRLRPMSKKEKESGSRCCVRIVN-KRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTAD 287 (822)
Q Consensus 209 ~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~-~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~p 287 (822)
..++|+|+||+||++..|...+...+..+.+ ...+.+... ...+.|.||+||.|+++|++||+.++.|
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~-----------~~~~~y~FDrVF~pnatQe~Vy~~~a~~ 73 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETT-----------KETKTYVFDRVFSPNATQEDVYEFAAKP 73 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecc-----------cccccceeeeecCCCccHHHHHHHHHHH
Confidence 3578999999999999998888776655554 333333211 1237899999999999999999999999
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceeecccCC---CCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCC
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTMLGTIE---NPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSP 364 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e---~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p 364 (822)
+|++||.|||+||||||||||||||||.|... ..|||||++++||.+|........|.|.|||||||+|+|+|||++
T Consensus 74 Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~ 153 (607)
T KOG0240|consen 74 IVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDP 153 (607)
T ss_pred HHHHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCc
Confidence 99999999999999999999999999999766 459999999999999999887889999999999999999999998
Q ss_pred C-CCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEe
Q 003413 365 G-RPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVG 442 (822)
Q Consensus 365 ~-~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~S 442 (822)
. .++.+.+|+. +++|+|++++.|.++++++.+++.|..+|.++.|+||.+|||||+||+|+|.+...... ..+.|
T Consensus 154 ~k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~---~~~~g 230 (607)
T KOG0240|consen 154 EKTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDK---RKLSG 230 (607)
T ss_pred ccCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccch---hhccc
Confidence 6 4799999965 89999999999999999999999999999999999999999999999999999876553 35789
Q ss_pred eEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcC-CCCCCccCchhhhhhhhccCCCceeeEEEeeCC
Q 003413 443 KLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEG-KKHIPYRNSKLTQLLKDSLGGACNTVMIANISP 521 (822)
Q Consensus 443 kL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~-~~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISP 521 (822)
+|+||||||||+..++|+.|.-+.|+.+||+||++||+||+||+++ +.|||||||||||||||+|||||+|.+|+|++|
T Consensus 231 kLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csP 310 (607)
T KOG0240|consen 231 KLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSP 310 (607)
T ss_pred cEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCC
Confidence 9999999999999999999999999999999999999999999998 689999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhcccccccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 522 CNLSFGETQNTLHWADRAKEIRTKEGEANEETLQVPDSGTDQAKLLLELQKENRELRVQMARQQQRL 588 (822)
Q Consensus 522 s~~~~eETLsTLrFA~Rak~Iknk~~~~ne~~~~~~~~~~d~~~li~eLq~Ei~~Lr~eL~~~q~~i 588 (822)
+..+..||.+||+|++|||.|+|.+. +|+.. ......+.|+.+-..+..+...++...
T Consensus 311 ss~n~~ET~STl~fg~rak~ikN~v~-~n~e~--------~~e~~~r~~e~~kd~~~~~~~~~~~~~ 368 (607)
T KOG0240|consen 311 SSLNEAETKSTLRFGNRAKTIKNTVW-VNLEL--------TAEEWKRKLEKKKDKNVALKEELEKLR 368 (607)
T ss_pred ccccccccccchhhccccccccchhh-hhhHh--------hHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999985 44432 234566667776666666665555443
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.2e-79 Score=672.71 Aligned_cols=323 Identities=35% Similarity=0.571 Sum_probs=292.7
Q ss_pred CeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhh--hhcccCCeeeEeccccCCCCchhHHhhhhHHHHH
Q 003413 212 RILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYL--RLKRLRGRHFTFDASFPDSTSQHEVYSRTTADLV 289 (822)
Q Consensus 212 ~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~--~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pLV 289 (822)
+|+|||||||+...|...+...||.+.++.+|.++.+....... .......+.|.||+||+++++|++||+.++.|+|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v 81 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV 81 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence 69999999999999988888899999998888887654321110 0112357899999999999999999999999999
Q ss_pred HHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCCCC---
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGR--- 366 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p~~--- 366 (822)
+++++|||+||||||||||||||||+|+.+++|||||++++||+.+.. |.|.|||+|||||+|+|||++..
T Consensus 82 ~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~~~~~~ 155 (345)
T cd01368 82 QDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLEDSPSST 155 (345)
T ss_pred HHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCCccccc
Confidence 999999999999999999999999999999999999999999999865 89999999999999999998743
Q ss_pred ----CceEeeCC-CCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCC-----c
Q 003413 367 ----PLVLREDK-QGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASM-----N 436 (822)
Q Consensus 367 ----~L~ired~-~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~-----~ 436 (822)
++.++++. ++++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+....... .
T Consensus 156 ~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~ 235 (345)
T cd01368 156 KKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDK 235 (345)
T ss_pred cCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCC
Confidence 68999997 4799999999999999999999999999999999999999999999999999887654311 1
Q ss_pred eeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhc------CCCCCCccCchhhhhhhhccCCC
Q 003413 437 IINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVE------GKKHIPYRNSKLTQLLKDSLGGA 510 (822)
Q Consensus 437 ~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~------~~~hIPYRdSKLTrLLqDSLGGn 510 (822)
.....|+|+|||||||||..+++..|.+++|+..||+||++|++||.+|++ +..||||||||||+||+|+||||
T Consensus 236 ~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~ 315 (345)
T cd01368 236 DQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGE 315 (345)
T ss_pred CceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCC
Confidence 235679999999999999999999999999999999999999999999987 45799999999999999999999
Q ss_pred ceeeEEEeeCCCCCCHHHHHHHHHHHHHhh
Q 003413 511 CNTVMIANISPCNLSFGETQNTLHWADRAK 540 (822)
Q Consensus 511 skT~mIa~ISPs~~~~eETLsTLrFA~Rak 540 (822)
|+|+||+||||+..+++||++||+||.+|+
T Consensus 316 s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 316 GKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=3.5e-78 Score=663.14 Aligned_cols=332 Identities=39% Similarity=0.620 Sum_probs=300.8
Q ss_pred CCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCC-------CchhHHhhh
Q 003413 211 SRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDS-------TSQHEVYSR 283 (822)
Q Consensus 211 ~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~-------asQeeVF~~ 283 (822)
++|+|+|||||++..|...+..++|.+.+ ..+.+..+.... ......+.|.||+||+++ ++|++||+.
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~v~v~~~~~~~----~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~ 75 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG-KVTTLKNPKAAD----ATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFED 75 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC-CEEEEEcCCccc----ccccCceEEECCeEecccCCCCCCCCCHHHHHHH
Confidence 47999999999999999889888888876 666666543211 012346799999999998 999999999
Q ss_pred hHHHHHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCC-CCcEEEEEEEEEEecceeeecC
Q 003413 284 TTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSC-DGNHVVHLSYLEVYNETVRDLL 362 (822)
Q Consensus 284 ~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~-~~~~~V~vS~lEIYNE~V~DLL 362 (822)
++.|+|+++++|||+||||||||||||||||+|+..++|||||++++||+.+..... ...|.|.|||+|||||+|+|||
T Consensus 76 ~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL 155 (356)
T cd01365 76 LGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLL 155 (356)
T ss_pred HHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCC
Confidence 999999999999999999999999999999999999999999999999999977544 5689999999999999999999
Q ss_pred CCC----CCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCC-Cc
Q 003413 363 SPG----RPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDAS-MN 436 (822)
Q Consensus 363 ~p~----~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~-~~ 436 (822)
++. ..+.++++.. |++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+...+.. ..
T Consensus 156 ~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~ 235 (356)
T cd01365 156 NPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDL 235 (356)
T ss_pred CCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCC
Confidence 987 3788999865 89999999999999999999999999999999999999999999999999988765431 12
Q ss_pred eeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcC--------CCCCCccCchhhhhhhhccC
Q 003413 437 IINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEG--------KKHIPYRNSKLTQLLKDSLG 508 (822)
Q Consensus 437 ~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~--------~~hIPYRdSKLTrLLqDSLG 508 (822)
.....|+|+|||||||||..+++..|.+++|+..||+||++|++||.+|+.. ..||||||||||+||+|+||
T Consensus 236 ~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lg 315 (356)
T cd01365 236 TTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLG 315 (356)
T ss_pred CceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcC
Confidence 2457899999999999999999999999999999999999999999999864 37999999999999999999
Q ss_pred CCceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhhcccc
Q 003413 509 GACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKEG 547 (822)
Q Consensus 509 GnskT~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk~~ 547 (822)
|||+|+||+||||+..+++||++||+||+|+++|++.|.
T Consensus 316 g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~ 354 (356)
T cd01365 316 GNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAV 354 (356)
T ss_pred CCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccc
Confidence 999999999999999999999999999999999999984
No 12
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=5.4e-78 Score=653.76 Aligned_cols=320 Identities=43% Similarity=0.620 Sum_probs=292.1
Q ss_pred CCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHHHH
Q 003413 211 SRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADLVE 290 (822)
Q Consensus 211 ~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pLV~ 290 (822)
.+|+|+|||||+.+.|...+..+++.+.+.+++.+.++...... ......+.|.||+||+++++|++||+.++.|+|+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~ 78 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDL--TKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIP 78 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCcccccc--ccccCCceEecceEECCCCCHHHHHHHHHHHHHH
Confidence 37999999999999998878888888877767777654322111 1112367999999999999999999999999999
Q ss_pred HHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCCCCCceE
Q 003413 291 AVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGRPLVL 370 (822)
Q Consensus 291 svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p~~~L~i 370 (822)
++++|||+||||||||||||||||+|+.+++|||||++++||+.+.... ..|.|.+||+|||||+|+|||++...+.+
T Consensus 79 ~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~~~l~i 156 (322)
T cd01367 79 HVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLNDRKRLSV 156 (322)
T ss_pred HHhCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccCccceeE
Confidence 9999999999999999999999999999999999999999999987654 57899999999999999999999999999
Q ss_pred eeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEeeEEEeec
Q 003413 371 REDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKLSLIDL 449 (822)
Q Consensus 371 red~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~SkL~LVDL 449 (822)
+++.. +++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|..... ....|+|+||||
T Consensus 157 ~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~------~~~~s~l~~vDL 230 (322)
T cd01367 157 LEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL------NKLLGKLSFIDL 230 (322)
T ss_pred EEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC------CeeEEEEEEeec
Confidence 99965 79999999999999999999999999999999999999999999999999987654 245799999999
Q ss_pred CCCccccccc-chhhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhccCCCceeeEEEeeCCCCCCHHH
Q 003413 450 AGSERALATD-QRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGE 528 (822)
Q Consensus 450 AGSER~~kt~-~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~~~~eE 528 (822)
|||||...++ ..+.+++|+.+||+||++|++||.+|+.++.||||||||||+||+|+|||||+|+||+||||+..+++|
T Consensus 231 AGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~e 310 (322)
T cd01367 231 AGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEH 310 (322)
T ss_pred CCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHH
Confidence 9999998765 568899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 003413 529 TQNTLHWADRAK 540 (822)
Q Consensus 529 TLsTLrFA~Rak 540 (822)
|++||+||+|+|
T Consensus 311 Tl~tL~fa~r~k 322 (322)
T cd01367 311 TLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHhhC
Confidence 999999999986
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=3.2e-77 Score=654.18 Aligned_cols=328 Identities=40% Similarity=0.637 Sum_probs=298.6
Q ss_pred CCeEEEEEcCCCCchhhhcCCceEEEEecC-ceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHHH
Q 003413 211 SRILVFVRLRPMSKKEKESGSRCCVRIVNK-RDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADLV 289 (822)
Q Consensus 211 ~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~-~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pLV 289 (822)
.+|+|+|||||+...|...++..++.+.+. ..|.+..... .....+.|.||+||+++++|++||+.++.|+|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-------~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv 74 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-------DKQSTKTYTFDKVFGPEADQIEVYSQVVSPIL 74 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-------ccccceeEeccccCCCCCCHHHHHHHHHHHHH
Confidence 589999999999999988788888888754 5555543211 12346799999999999999999999999999
Q ss_pred HHHHcCCCceeeeeccCCCCcceeecccC-----------CCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEeccee
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTMLGTI-----------ENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETV 358 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM~G~~-----------e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V 358 (822)
+++++|||+||||||||||||||||+|+. +++|||||++++||+.+... ...|.|.+||+|||||+|
T Consensus 75 ~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v 152 (352)
T cd01364 75 DEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEEL 152 (352)
T ss_pred HHHhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCee
Confidence 99999999999999999999999999974 34899999999999998765 568999999999999999
Q ss_pred eecCCCC----CCceEeeC---CCCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEee
Q 003413 359 RDLLSPG----RPLVLRED---KQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVK 431 (822)
Q Consensus 359 ~DLL~p~----~~L~ired---~~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~ 431 (822)
+|||++. .++.++++ ..|++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+...
T Consensus 153 ~DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~ 232 (352)
T cd01364 153 FDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKET 232 (352)
T ss_pred eeCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEecc
Confidence 9999975 47899998 4589999999999999999999999999999999999999999999999999998765
Q ss_pred cCCCceeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhccCCCc
Q 003413 432 DASMNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGAC 511 (822)
Q Consensus 432 ~~~~~~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDSLGGns 511 (822)
..........|+|+|||||||||..+.+..+.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||||
T Consensus 233 ~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s 312 (352)
T cd01364 233 TISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRT 312 (352)
T ss_pred CCCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCc
Confidence 54333345679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhhcccc
Q 003413 512 NTVMIANISPCNLSFGETQNTLHWADRAKEIRTKEG 547 (822)
Q Consensus 512 kT~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk~~ 547 (822)
+|+||+||||+..+++||++||+||+||++|+|.|.
T Consensus 313 ~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~ 348 (352)
T cd01364 313 KTSIIATISPASINLEETLSTLEYAHRAKNIKNKPE 348 (352)
T ss_pred eEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccc
Confidence 999999999999999999999999999999999995
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=8e-77 Score=647.12 Aligned_cols=325 Identities=43% Similarity=0.654 Sum_probs=296.0
Q ss_pred CCeEEEEEcCCCCchhhhcCCceEEEEe-cCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHHH
Q 003413 211 SRILVFVRLRPMSKKEKESGSRCCVRIV-NKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADLV 289 (822)
Q Consensus 211 ~~IrV~VRVRPl~~~E~~~g~~~~V~v~-~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pLV 289 (822)
.+|+|+|||||++..|...+...++.+. ++..|.+..+... .....+.|.||+||+++++|++||+.++.|+|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv 74 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKAD------AKEPPKVFTFDAVYDPNSTQEDVYNETARPLV 74 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCccc------ccCCCceeeeccccCCCccHHHHHHHHHHHHH
Confidence 3799999999999999888888888775 4555666554321 12356899999999999999999999999999
Q ss_pred HHHHcCCCceeeeeccCCCCcceeecccCC---CCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCCCC
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTMLGTIE---NPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGR 366 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM~G~~e---~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p~~ 366 (822)
+++++|||+||||||||||||||||+|+.. ++|||||++++||+.+.... +..|.|.+||+|||||+|+|||++..
T Consensus 75 ~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~ 153 (333)
T cd01371 75 DSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAE-NVQFLVRVSYLEIYNEEVRDLLGKDQ 153 (333)
T ss_pred HHHhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhcc-CccEEEEEEEEEeeCCeeeeCCCCCC
Confidence 999999999999999999999999999887 89999999999999987654 37899999999999999999999875
Q ss_pred --CceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEee
Q 003413 367 --PLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGK 443 (822)
Q Consensus 367 --~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~Sk 443 (822)
.+.+++++. |++|.|++++.|.|++|+..+|..|.++|.++.|.+|..|||||+||+|.|++.............|+
T Consensus 154 ~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~ 233 (333)
T cd01371 154 KKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGK 233 (333)
T ss_pred CCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEE
Confidence 789999876 89999999999999999999999999999999999999999999999999998766432233456899
Q ss_pred EEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCCC-CCCccCchhhhhhhhccCCCceeeEEEeeCCC
Q 003413 444 LSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKK-HIPYRNSKLTQLLKDSLGGACNTVMIANISPC 522 (822)
Q Consensus 444 L~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~-hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs 522 (822)
|+|||||||||..+++..+.+++|+..||+||.+|++||.+|+.++. |||||+||||+||+|+|||||+|+||+||+|.
T Consensus 234 L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~ 313 (333)
T cd01371 234 LNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPA 313 (333)
T ss_pred EEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999875 99999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 003413 523 NLSFGETQNTLHWADRAKEI 542 (822)
Q Consensus 523 ~~~~eETLsTLrFA~Rak~I 542 (822)
..+++||++||+||+|||+|
T Consensus 314 ~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 314 DYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred cccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999986
No 15
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=3.1e-76 Score=639.05 Aligned_cols=317 Identities=44% Similarity=0.702 Sum_probs=293.0
Q ss_pred CeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHHHHH
Q 003413 212 RILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADLVEA 291 (822)
Q Consensus 212 ~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pLV~s 291 (822)
+|+|+|||||+...|. .+..+++.+.++..+.+.++ ...+.|.||+||+++++|++||+.++.|+|++
T Consensus 1 ~V~V~vRvRP~~~~e~-~~~~~~~~~~~~~~v~~~~~-----------~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~ 68 (321)
T cd01374 1 KIKVSVRVRPLNPRES-DNEQVAWSIDNDNTISLEES-----------TPGQSFTFDRVFGGESTNREVYERIAKPVVRS 68 (321)
T ss_pred CeEEEEEcCcCCcccc-cCCcceEEECCCCEEEEcCC-----------CCCeEEecCeEECCCCCHHHHHHHHHHHHHHH
Confidence 5999999999999887 35677888887766666542 23689999999999999999999999999999
Q ss_pred HHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCCC-CCceE
Q 003413 292 VLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPG-RPLVL 370 (822)
Q Consensus 292 vL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p~-~~L~i 370 (822)
+++|||+||||||||||||||||+|+.+++|||||++++||..+.... +..|.|.+||+|||||+|+|||++. ..+.+
T Consensus 69 ~l~G~n~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i 147 (321)
T cd01374 69 ALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSPQELRI 147 (321)
T ss_pred HHCCCceeEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCCCCceE
Confidence 999999999999999999999999999999999999999999987654 6689999999999999999999988 78999
Q ss_pred eeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEeeEEEeec
Q 003413 371 REDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKLSLIDL 449 (822)
Q Consensus 371 red~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~SkL~LVDL 449 (822)
++++. |+++.|++++.|.|++|+..+|..|.++|.+++|.+|..|||||+||+|.|...............|+|+||||
T Consensus 148 ~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDL 227 (321)
T cd01374 148 REDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDL 227 (321)
T ss_pred EECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEEC
Confidence 99977 89999999999999999999999999999999999999999999999999998776542223457799999999
Q ss_pred CCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCC--CCCCccCchhhhhhhhccCCCceeeEEEeeCCCCCCHH
Q 003413 450 AGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGK--KHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFG 527 (822)
Q Consensus 450 AGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~--~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~~~~e 527 (822)
|||||....+ .+.+++|+.+||+||++|++||.+|+.++ .|||||+||||+||+|+|||||+|+|||||||...+++
T Consensus 228 AGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~ 306 (321)
T cd01374 228 AGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVE 306 (321)
T ss_pred CCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHH
Confidence 9999999998 89999999999999999999999999985 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q 003413 528 ETQNTLHWADRAKEI 542 (822)
Q Consensus 528 ETLsTLrFA~Rak~I 542 (822)
||++||+||+|+++|
T Consensus 307 eTl~TL~~a~r~~~i 321 (321)
T cd01374 307 ETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999976
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=3.9e-76 Score=638.95 Aligned_cols=318 Identities=40% Similarity=0.630 Sum_probs=296.6
Q ss_pred CCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHHHH
Q 003413 211 SRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADLVE 290 (822)
Q Consensus 211 ~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pLV~ 290 (822)
.+|+|+|||||+...|...+...||.+.++.+|.+... ...+.|.||+||+++++|++||+.++.|+|+
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~-----------~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~ 70 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGS-----------DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVD 70 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCC-----------CCceEEEcCeEECCCCCHHHHHHHHHHHHHH
Confidence 47999999999999998888889999988877777542 2357999999999999999999999999999
Q ss_pred HHHcCCCceeeeeccCCCCcceeecccCC---CCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCCC-C
Q 003413 291 AVLQGRNGSVFCYGATGAGKTYTMLGTIE---NPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPG-R 366 (822)
Q Consensus 291 svL~GyN~tIfAYGQTGSGKTyTM~G~~e---~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p~-~ 366 (822)
++++|||+||||||||||||||||+|+.. ++|||||++++||+.+........|.|.+||+|||||+|+|||++. .
T Consensus 71 ~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 150 (325)
T cd01369 71 DVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKD 150 (325)
T ss_pred HHHcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccC
Confidence 99999999999999999999999999987 8999999999999999887666789999999999999999999985 5
Q ss_pred CceEeeCC-CCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEeeEE
Q 003413 367 PLVLREDK-QGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKLS 445 (822)
Q Consensus 367 ~L~ired~-~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~SkL~ 445 (822)
.+.+++++ .|+++.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+...... ....|+|+
T Consensus 151 ~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~---~~~~s~l~ 227 (325)
T cd01369 151 NLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETG---SKKRGKLF 227 (325)
T ss_pred CceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCC---CEEEEEEE
Confidence 68899987 489999999999999999999999999999999999999999999999999988764432 34679999
Q ss_pred EeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCC-CCCCccCchhhhhhhhccCCCceeeEEEeeCCCCC
Q 003413 446 LIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGK-KHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNL 524 (822)
Q Consensus 446 LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~-~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~~ 524 (822)
|||||||||..+++..|.+++|+..||+||++|++||.+|+.++ .|||||||+||+||+|+|||+|+|+||+||||+..
T Consensus 228 ~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~ 307 (325)
T cd01369 228 LVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSY 307 (325)
T ss_pred EEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccc
Confidence 99999999999999999999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhh
Q 003413 525 SFGETQNTLHWADRAKEI 542 (822)
Q Consensus 525 ~~eETLsTLrFA~Rak~I 542 (822)
+++||++||+||+|||+|
T Consensus 308 ~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 308 NESETLSTLRFGARAKTI 325 (325)
T ss_pred cHHHHHHHHHHHHHhhcC
Confidence 999999999999999986
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=3.7e-76 Score=638.47 Aligned_cols=312 Identities=41% Similarity=0.622 Sum_probs=284.7
Q ss_pred CeEEEEEcCCCCchhhhcCCceEEEEecC-----ceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHH
Q 003413 212 RILVFVRLRPMSKKEKESGSRCCVRIVNK-----RDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTA 286 (822)
Q Consensus 212 ~IrV~VRVRPl~~~E~~~g~~~~V~v~~~-----~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~ 286 (822)
+|+|+|||||+.+.| .+...||.+.+. ..+.+..+.+. ...+.|.||+||+++++|++||+.++.
T Consensus 1 ~i~V~vRvRP~~~~e--~~~~~~v~~~~~~~~~~~~v~~~~~~~~--------~~~~~f~FD~vf~~~~~q~~vy~~~~~ 70 (319)
T cd01376 1 NVRVVVRVRPFLDCE--EDSSSCVRGIDSDQGQAKSVEIENPRNR--------GETKKYQFDAFYGTECTQEDIFSREVK 70 (319)
T ss_pred CcEEEEEeCcCCccc--cCCCceEEEeCCCCCcceEEEEeCCCCC--------CCccEEecCeEECCCCCHHHHHHHHHH
Confidence 589999999999888 344566766554 35555544221 246789999999999999999999999
Q ss_pred HHHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCC-C
Q 003413 287 DLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSP-G 365 (822)
Q Consensus 287 pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p-~ 365 (822)
|+|+++++|||+||||||||||||||||+|+..++|||||++++||+.+... ...+.|.+||+|||||+|+|||++ .
T Consensus 71 plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~~ 148 (319)
T cd01376 71 PIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQ--AWTGAFSMSYYEIYNEKVYDLLEPAK 148 (319)
T ss_pred HHHHHHhCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhc--cccceEEEEEEEEECCEeeEccCCCC
Confidence 9999999999999999999999999999999999999999999999988654 367899999999999999999998 4
Q ss_pred CCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEeeE
Q 003413 366 RPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKL 444 (822)
Q Consensus 366 ~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~SkL 444 (822)
..+.+++++. ++++.|++++.|.|++|+..+|..|.++|.+++|.+|..|||||+||+|.|.+.... ....|+|
T Consensus 149 ~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~-----~~~~s~l 223 (319)
T cd01376 149 KELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN-----IQLEGKL 223 (319)
T ss_pred CCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC-----ceEEEEE
Confidence 6799999965 799999999999999999999999999999999999999999999999999876432 2467999
Q ss_pred EEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhccCCCceeeEEEeeCCCCC
Q 003413 445 SLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNL 524 (822)
Q Consensus 445 ~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~~ 524 (822)
+|||||||||...++..|.+++|+..||+||++|++||.+|+.+..|||||+|+||+||+|+|||||+|+||+||||+..
T Consensus 224 ~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~ 303 (319)
T cd01376 224 NLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERS 303 (319)
T ss_pred EEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 003413 525 SFGETQNTLHWADRAK 540 (822)
Q Consensus 525 ~~eETLsTLrFA~Rak 540 (822)
+++||++||+||+|||
T Consensus 304 ~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 304 FYQDTLSTLNFASRSK 319 (319)
T ss_pred hHHHHHHHHHHHHhhC
Confidence 9999999999999986
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=3.8e-75 Score=634.70 Aligned_cols=318 Identities=44% Similarity=0.673 Sum_probs=291.0
Q ss_pred CeEEEEEcCCCCchhhhcCCceEEEEecCc-eeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHHHH
Q 003413 212 RILVFVRLRPMSKKEKESGSRCCVRIVNKR-DVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADLVE 290 (822)
Q Consensus 212 ~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~-~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pLV~ 290 (822)
+|+|+|||||+...|...+...|+.+.... .+.+. ..+.|.||+||+++++|++||+.++.|+|+
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~--------------~~~~f~FD~vf~~~~~q~~vy~~~~~plv~ 67 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVG--------------TDKSFTFDYVFDPSTSQEEVYNTCVAPLVD 67 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEec--------------CCcEEeccccCCCCCCHHHHHHHHHHHHHH
Confidence 699999999999999888888888776443 33332 257899999999999999999999999999
Q ss_pred HHHcCCCceeeeeccCCCCcceeecccC------CCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCC
Q 003413 291 AVLQGRNGSVFCYGATGAGKTYTMLGTI------ENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSP 364 (822)
Q Consensus 291 svL~GyN~tIfAYGQTGSGKTyTM~G~~------e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p 364 (822)
++++|||+||||||||||||||||+|+. +++|||||++++||+.+........|.|.|||+|||||+|+|||++
T Consensus 68 ~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~ 147 (341)
T cd01372 68 GLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSP 147 (341)
T ss_pred HHhCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCC
Confidence 9999999999999999999999999974 5689999999999999988776678999999999999999999997
Q ss_pred C----CCceEeeCC-CCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCC-----
Q 003413 365 G----RPLVLREDK-QGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDAS----- 434 (822)
Q Consensus 365 ~----~~L~ired~-~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~----- 434 (822)
. ..+.+++++ .|++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+......
T Consensus 148 ~~~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~ 227 (341)
T cd01372 148 STSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMS 227 (341)
T ss_pred cccCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcccccc
Confidence 5 479999997 489999999999999999999999999999999999999999999999999998876411
Q ss_pred --CceeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCC---CCCCccCchhhhhhhhccCC
Q 003413 435 --MNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGK---KHIPYRNSKLTQLLKDSLGG 509 (822)
Q Consensus 435 --~~~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~---~hIPYRdSKLTrLLqDSLGG 509 (822)
.......|+|+|||||||||..+++..+.+++|+..||+||++|++||.+|+.++ .|||||+||||+||+|+|||
T Consensus 228 ~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg 307 (341)
T cd01372 228 GDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGG 307 (341)
T ss_pred ccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCC
Confidence 1223567999999999999999999999999999999999999999999999876 69999999999999999999
Q ss_pred CceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhh
Q 003413 510 ACNTVMIANISPCNLSFGETQNTLHWADRAKEIR 543 (822)
Q Consensus 510 nskT~mIa~ISPs~~~~eETLsTLrFA~Rak~Ik 543 (822)
|++|+||+||||+..+++||++||+||+|||+|+
T Consensus 308 ~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 308 NSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred CceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999985
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1e-74 Score=630.93 Aligned_cols=322 Identities=39% Similarity=0.567 Sum_probs=285.9
Q ss_pred CeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHHHHH
Q 003413 212 RILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADLVEA 291 (822)
Q Consensus 212 ~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pLV~s 291 (822)
.|+|+|||||+...+.. .+....++..+.++.+..............+.|.||+||++ ++|++||+.++.|+|++
T Consensus 1 ~i~V~vRvRP~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~ 75 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS----SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDS 75 (334)
T ss_pred CeEEEEECCCCCCCCCc----cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHH
Confidence 48999999999874422 23334456667776655433322222345678999999999 99999999999999999
Q ss_pred HHcCCCceeeeeccCCCCcceeecccC---CCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCCC---
Q 003413 292 VLQGRNGSVFCYGATGAGKTYTMLGTI---ENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPG--- 365 (822)
Q Consensus 292 vL~GyN~tIfAYGQTGSGKTyTM~G~~---e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p~--- 365 (822)
+++|||+||||||||||||||||+|+. .++|||||++++||+.+.... +..|.|++||+|||||+|+|||++.
T Consensus 76 ~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 154 (334)
T cd01375 76 ALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRA-TKTYTVHVSYLEIYNEQLYDLLGDTPEA 154 (334)
T ss_pred HhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhcc-CcceEEEEEEEEEECCEeecCCCCCccc
Confidence 999999999999999999999999976 468999999999999997654 5679999999999999999999987
Q ss_pred ----CCceEeeCC-CCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeE
Q 003413 366 ----RPLVLREDK-QGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINR 440 (822)
Q Consensus 366 ----~~L~ired~-~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~ 440 (822)
..+.+++++ ++++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|.|.+........ ...
T Consensus 155 ~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~-~~~ 233 (334)
T cd01375 155 LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSE-VVR 233 (334)
T ss_pred cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCC-ceE
Confidence 468899985 48999999999999999999999999999999999999999999999999999875544332 456
Q ss_pred EeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCC-CCCCccCchhhhhhhhccCCCceeeEEEee
Q 003413 441 VGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGK-KHIPYRNSKLTQLLKDSLGGACNTVMIANI 519 (822)
Q Consensus 441 ~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~-~hIPYRdSKLTrLLqDSLGGnskT~mIa~I 519 (822)
.|+|+|||||||||..+++..+..++|+..||+||++|++||.+|+.++ .||||||||||+||+|+|||||+|+||+||
T Consensus 234 ~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~v 313 (334)
T cd01375 234 LSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATI 313 (334)
T ss_pred EEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEe
Confidence 8999999999999999999999999999999999999999999999988 899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhh
Q 003413 520 SPCNLSFGETQNTLHWADRAK 540 (822)
Q Consensus 520 SPs~~~~eETLsTLrFA~Rak 540 (822)
||+..+++||++||+||+|++
T Consensus 314 sp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 314 WVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999985
No 20
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3.6e-76 Score=686.51 Aligned_cols=340 Identities=37% Similarity=0.530 Sum_probs=299.3
Q ss_pred cccCCCCCCCCCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHH
Q 003413 201 AVLGKHVPSGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEV 280 (822)
Q Consensus 201 ~~~~~~~~~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeV 280 (822)
.+++.+++.+|+|||||||||+.+.|.......++.......+.+..+... .....+.|.||+||+|.++|++|
T Consensus 304 kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~f~fdkVf~p~~sQ~~V 377 (670)
T KOG0239|consen 304 KLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKG------DKLEPQSFKFDKVFGPLASQDDV 377 (670)
T ss_pred HHHHHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCC------CCCccccceeeeecCCcccHHHH
Confidence 445557789999999999999998886643333333332223444332211 11223469999999999999999
Q ss_pred hhhhHHHHHHHHHcCCCceeeeeccCCCCcceeecc-cCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceee
Q 003413 281 YSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLG-TIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVR 359 (822)
Q Consensus 281 F~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G-~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~ 359 (822)
|.. +.|+|+++|+|||+||||||||||||||||.| +++++|||||++++||..+......+.|.+.+||+|||||.|+
T Consensus 378 F~e-~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~ 456 (670)
T KOG0239|consen 378 FEE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIR 456 (670)
T ss_pred HHH-HHHHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHH
Confidence 975 89999999999999999999999999999999 7999999999999999999988778999999999999999999
Q ss_pred ecCCCC---CCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCC
Q 003413 360 DLLSPG---RPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASM 435 (822)
Q Consensus 360 DLL~p~---~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~ 435 (822)
|||++. ..+.|+++.. +.+|.+++.+.|.+.+++..+|+.|..+|++++|.+|++|||||+||+|+|.......+
T Consensus 457 DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~- 535 (670)
T KOG0239|consen 457 DLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTG- 535 (670)
T ss_pred HhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcc-
Confidence 999986 4688888875 68999999999999999999999999999999999999999999999999987744332
Q ss_pred ceeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhccCCCceeeE
Q 003413 436 NIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVM 515 (822)
Q Consensus 436 ~~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDSLGGnskT~m 515 (822)
....|.|+|||||||||+.+++..|.|++|+.+||+||++||+||.||+.+..||||||||||+||||||||++||+|
T Consensus 536 --~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLm 613 (670)
T KOG0239|consen 536 --IRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLM 613 (670)
T ss_pred --cccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceee
Confidence 346799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHhhhhhccccccc
Q 003413 516 IANISPCNLSFGETQNTLHWADRAKEIRTKEGEAN 550 (822)
Q Consensus 516 Ia~ISPs~~~~eETLsTLrFA~Rak~Iknk~~~~n 550 (822)
+++|||...++.||+++|+||.|++.+...+...+
T Consensus 614 fv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~ 648 (670)
T KOG0239|consen 614 FVNISPAAAALFETLCSLRFATRVRSVELGSARKQ 648 (670)
T ss_pred EEEeCccHHHHhhhhhccchHHHhhceeccccccc
Confidence 99999999999999999999999999987775433
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.9e-73 Score=618.57 Aligned_cols=320 Identities=38% Similarity=0.567 Sum_probs=292.5
Q ss_pred CCCeEEEEEcCCCCchhhhcCCceEEEEecC--ceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHH
Q 003413 210 GSRILVFVRLRPMSKKEKESGSRCCVRIVNK--RDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTAD 287 (822)
Q Consensus 210 ~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~--~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~p 287 (822)
+|+|+|+|||||+...|. .....++.+.+. ..+.+... ....+.|.||+||+++++|++||+. +.|
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~----------~~~~~~f~fD~vf~~~~~q~~v~~~-v~p 68 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG----------TGKKKSFSFDRVFDPDASQEDVFEE-VSP 68 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC----------CCCceEEecCEEECCCCCHHHHHHH-HHH
Confidence 478999999999998876 445567777765 55554332 1346799999999999999999997 699
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCC-CCcEEEEEEEEEEecceeeecCCCC-
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSC-DGNHVVHLSYLEVYNETVRDLLSPG- 365 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~-~~~~~V~vS~lEIYNE~V~DLL~p~- 365 (822)
+|+++++|+|+||||||+|||||||||+|+.+++||+||++++||..+..... +..|.|.+||+|||||+|+|||++.
T Consensus 69 ~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~ 148 (329)
T cd01366 69 LVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKP 148 (329)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCc
Confidence 99999999999999999999999999999999999999999999999987654 5689999999999999999999974
Q ss_pred ---CCceEeeCC-CCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEE
Q 003413 366 ---RPLVLREDK-QGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRV 441 (822)
Q Consensus 366 ---~~L~ired~-~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~ 441 (822)
..+.+++++ +++++.|++++.|.|++|+..+|..|.++|.++.|.+|..|||||+||+|.|.+...... ....
T Consensus 149 ~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~---~~~~ 225 (329)
T cd01366 149 APKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTG---EQTR 225 (329)
T ss_pred CCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCC---cEEE
Confidence 579999997 589999999999999999999999999999999999999999999999999988765422 3567
Q ss_pred eeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhccCCCceeeEEEeeCC
Q 003413 442 GKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISP 521 (822)
Q Consensus 442 SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISP 521 (822)
|+|+||||||||+..+.+..+.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||+++|+||+||||
T Consensus 226 s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp 305 (329)
T cd01366 226 GKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISP 305 (329)
T ss_pred EEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhc
Q 003413 522 CNLSFGETQNTLHWADRAKEIRT 544 (822)
Q Consensus 522 s~~~~eETLsTLrFA~Rak~Ikn 544 (822)
...+++||++||+||+|+++|++
T Consensus 306 ~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 306 LESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred chhhHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999976
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.1e-71 Score=605.33 Aligned_cols=327 Identities=48% Similarity=0.716 Sum_probs=299.7
Q ss_pred CeEEEEEcCCCCchhhhcCCceEEEEecCc--eeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHHH
Q 003413 212 RILVFVRLRPMSKKEKESGSRCCVRIVNKR--DVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADLV 289 (822)
Q Consensus 212 ~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~--~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pLV 289 (822)
+|+|+|||||+...|...+..+++.+.+.. +|.+..... ....+.|.||+||+++++|++||+.++.|+|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v 72 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKN--------RKEEKKFTFDKVFGATASQEDVFEETAAPLV 72 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCC--------CCCCeEEecCEEECCCCChHHHHHHHHHHHH
Confidence 589999999999999888888888887653 555544321 2356899999999999999999999999999
Q ss_pred HHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCCC-CCc
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPG-RPL 368 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p~-~~L 368 (822)
+.+++|+|+|||+||+|||||||||+|+.+++|||||++++||+.+........|.|.+||+|||+|+|+|||++. ..+
T Consensus 73 ~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l 152 (335)
T smart00129 73 DSVLEGYNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKL 152 (335)
T ss_pred HHHhcCCceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCc
Confidence 9999999999999999999999999999999999999999999999777667789999999999999999999975 568
Q ss_pred eEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEeeEEEe
Q 003413 369 VLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKLSLI 447 (822)
Q Consensus 369 ~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~SkL~LV 447 (822)
.+++++. |+++.|++++.|.|++|+..+|..|.++|.+++|.+|..|||||+||+|.|.+....... .....|+|+||
T Consensus 153 ~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~-~~~~~s~l~~V 231 (335)
T smart00129 153 EIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSS-GSGKASKLNLV 231 (335)
T ss_pred EEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCC-CCEEEEEEEEE
Confidence 9999976 899999999999999999999999999999999999999999999999999977443322 24678999999
Q ss_pred ecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhc--CCCCCCccCchhhhhhhhccCCCceeeEEEeeCCCCCC
Q 003413 448 DLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVE--GKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLS 525 (822)
Q Consensus 448 DLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~--~~~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~~~ 525 (822)
||||+||....+..+.+++|+..||+||.+|++||.+|++ +..|||||+|+||+||+++|||+++|+||+||||...+
T Consensus 232 DLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~ 311 (335)
T smart00129 232 DLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSN 311 (335)
T ss_pred ECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccc
Confidence 9999999999999999999999999999999999999999 45799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccc
Q 003413 526 FGETQNTLHWADRAKEIRTKEG 547 (822)
Q Consensus 526 ~eETLsTLrFA~Rak~Iknk~~ 547 (822)
++||++||+||+++++|+++|.
T Consensus 312 ~~eTl~tL~~a~~~~~i~~~p~ 333 (335)
T smart00129 312 LEETLSTLRFASRAKEIKNKAI 333 (335)
T ss_pred hHHHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999999984
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=4.9e-71 Score=597.90 Aligned_cols=321 Identities=47% Similarity=0.733 Sum_probs=294.7
Q ss_pred CeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHHHHH
Q 003413 212 RILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADLVEA 291 (822)
Q Consensus 212 ~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pLV~s 291 (822)
+|+|+|||||+...| ..+...+|.+.+++.|.+.++... .....+.|.||+||+++++|++||+.++.|+|++
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~ 73 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDNKTVTLTPPKDG------RKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVES 73 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCCCEEEEecCccc------cCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHH
Confidence 589999999998877 445677888888788888765432 1234689999999999999999999999999999
Q ss_pred HHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCC-CCcEEEEEEEEEEecceeeecCCC---CCC
Q 003413 292 VLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSC-DGNHVVHLSYLEVYNETVRDLLSP---GRP 367 (822)
Q Consensus 292 vL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~-~~~~~V~vS~lEIYNE~V~DLL~p---~~~ 367 (822)
+++|+|+|||+||+|||||||||+|+.+++|||||++++||+.+..... ...+.|.+||+|||+|+|+|||++ ..+
T Consensus 74 ~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~ 153 (328)
T cd00106 74 VLEGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKP 153 (328)
T ss_pred HhCCCceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999877543 567999999999999999999998 578
Q ss_pred ceEeeCC-CCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEeeEEE
Q 003413 368 LVLREDK-QGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKLSL 446 (822)
Q Consensus 368 L~ired~-~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~SkL~L 446 (822)
+.+++++ .|+++.|++++.|.|++|++.+|..|.++|.++.|.+|..|||||+||+|.|.......... ....|+|+|
T Consensus 154 l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~-~~~~s~l~~ 232 (328)
T cd00106 154 LSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGR-SIKSSKLNL 232 (328)
T ss_pred cEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCc-cEEEEEEEE
Confidence 9999997 58999999999999999999999999999999999999999999999999999887655322 356799999
Q ss_pred eecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCC--CCCCccCchhhhhhhhccCCCceeeEEEeeCCCCC
Q 003413 447 IDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGK--KHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNL 524 (822)
Q Consensus 447 VDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~--~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~~ 524 (822)
|||||+|+....+..+.++.|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+|||+++|+||+||+|...
T Consensus 233 VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~ 312 (328)
T cd00106 233 VDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSE 312 (328)
T ss_pred EECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchh
Confidence 9999999999999999999999999999999999999999988 99999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 003413 525 SFGETQNTLHWADRAK 540 (822)
Q Consensus 525 ~~eETLsTLrFA~Rak 540 (822)
+++||++||+||+|||
T Consensus 313 ~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 313 NYDETLSTLRFASRAK 328 (328)
T ss_pred hHHHHHHHHHHHHhcC
Confidence 9999999999999986
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.6e-71 Score=603.25 Aligned_cols=320 Identities=42% Similarity=0.690 Sum_probs=283.6
Q ss_pred EcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCC
Q 003413 218 RLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRN 297 (822)
Q Consensus 218 RVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN 297 (822)
||||++..|...+...++.+.+.......... ........+.|.||+||+++++|++||+.++.|+|+++++|||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n 75 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSV-----NSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYN 75 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEET-----TEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-E
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccc-----cccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCc
Confidence 89999999999888887766532111110000 0112245689999999999999999999999999999999999
Q ss_pred ceeeeeccCCCCcceeeccc--CCCCchHHHHHHHHHHhhhhcCCC--CcEEEEEEEEEEecceeeecCCCC-----CCc
Q 003413 298 GSVFCYGATGAGKTYTMLGT--IENPGVMVLAIKDLFTKIRQRSCD--GNHVVHLSYLEVYNETVRDLLSPG-----RPL 368 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM~G~--~e~~GIIpRal~~LF~~i~~~~~~--~~~~V~vS~lEIYNE~V~DLL~p~-----~~L 368 (822)
+||||||+|||||||||+|+ ..++|||||++++||..+...... ..|.|+|||+|||||+|+|||++. .++
T Consensus 76 ~~i~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l 155 (335)
T PF00225_consen 76 ATIFAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPL 155 (335)
T ss_dssp EEEEEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEB
T ss_pred eEEEeeccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccccccccc
Confidence 99999999999999999999 889999999999999999886654 579999999999999999999987 469
Q ss_pred eEeeCCC-C-eEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCce-eeEEeeEE
Q 003413 369 VLREDKQ-G-ILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNI-INRVGKLS 445 (822)
Q Consensus 369 ~ired~~-G-v~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~-~~~~SkL~ 445 (822)
.++++.. | +++.|++++.|.+++|++.+|..|.++|.+..|.+|..|||||+||+|.|.+......... ....|+|+
T Consensus 156 ~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~ 235 (335)
T PF00225_consen 156 KIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLT 235 (335)
T ss_dssp EEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEE
T ss_pred ceeeccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeeccee
Confidence 9999987 6 9999999999999999999999999999999999999999999999999999887664331 25789999
Q ss_pred EeecCCCcccccccc-hhhhhHHHHhhhhhHHHHHHHHHHHhcC--CCCCCccCchhhhhhhhccCCCceeeEEEeeCCC
Q 003413 446 LIDLAGSERALATDQ-RTLRSLEGANINRSLLALSSCINALVEG--KKHIPYRNSKLTQLLKDSLGGACNTVMIANISPC 522 (822)
Q Consensus 446 LVDLAGSER~~kt~~-~g~rlkE~~~INkSLsaLg~VI~ALa~~--~~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs 522 (822)
||||||+||..+.+. .+.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+||||+
T Consensus 236 ~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~ 315 (335)
T PF00225_consen 236 FVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPS 315 (335)
T ss_dssp EEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SB
T ss_pred eeecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCc
Confidence 999999999998886 4788999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 003413 523 NLSFGETQNTLHWADRAKEI 542 (822)
Q Consensus 523 ~~~~eETLsTLrFA~Rak~I 542 (822)
..+++||++||+||+++|+|
T Consensus 316 ~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 316 SEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp GGGHHHHHHHHHHHHHHTTE
T ss_pred cccHHHHHHHHHHHHHHcCC
Confidence 99999999999999999987
No 25
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9e-69 Score=593.70 Aligned_cols=359 Identities=37% Similarity=0.528 Sum_probs=308.7
Q ss_pred hhhhcccccCcchhhhccCcccccCCCCCCCCCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcc
Q 003413 180 AQTELKGVTGDKNMQELEKPEAVLGKHVPSGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKR 259 (822)
Q Consensus 180 ~~~e~~~~~g~~~~~~l~~~~~~~~~~~~~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~ 259 (822)
.+.....++......+.-....+.........+|.||||-||++..|.......+|.+..++.++++++...-+.. +.
T Consensus 177 ~npn~e~~~mi~~~r~~L~~~pls~~~~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLt--kY 254 (676)
T KOG0246|consen 177 SNPNWEFAQMIREYREQLDSSPLSMGDGVNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLT--KY 254 (676)
T ss_pred CCCchHHHHHHHHHhhhhcccccccCCCCccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchH--HH
Confidence 3333334444444444444333344444457899999999999999998888889999888889998876543322 23
Q ss_pred cCCeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeecccCC------CCchHHHHHHHHHH
Q 003413 260 LRGRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIE------NPGVMVLAIKDLFT 333 (822)
Q Consensus 260 ~~~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e------~~GIIpRal~~LF~ 333 (822)
...+.|.||++|++.++++.||..+++|||..+|+|--+|+||||||||||||||-|+.. ..||.-++.+|+|.
T Consensus 255 lEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~ 334 (676)
T KOG0246|consen 255 LENQKFRFDYAFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFR 334 (676)
T ss_pred HhhceEEEeeecccccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHH
Confidence 457899999999999999999999999999999999999999999999999999988753 24999999999999
Q ss_pred hhhhcC-CCCcEEEEEEEEEEecceeeecCCCCCCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCC
Q 003413 334 KIRQRS-CDGNHVVHLSYLEVYNETVRDLLSPGRPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRA 411 (822)
Q Consensus 334 ~i~~~~-~~~~~~V~vS~lEIYNE~V~DLL~p~~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~ 411 (822)
.+.... ....+.|++||||||+.+|||||++...|.+.+|.. -|.|.||.+..|.+.+|++.+|+.|+.-|+.+.|..
T Consensus 335 ~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsA 414 (676)
T KOG0246|consen 335 LLRQPTYRKLDLKVYVTFFEIYGGKVYDLLNDKKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSA 414 (676)
T ss_pred HhcccchhhcceEEEEEEEEEeCcchhhhhccccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccC
Confidence 887632 234788999999999999999999999999999976 689999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEEEEEeecCCCceeeEEeeEEEeecCCCcccccc-cchhhhhHHHHhhhhhHHHHHHHHHHHhcCCC
Q 003413 412 NETSSRSHAILQVIIEYRVKDASMNIINRVGKLSLIDLAGSERALAT-DQRTLRSLEGANINRSLLALSSCINALVEGKK 490 (822)
Q Consensus 412 N~~SSRSH~IftI~V~~~~~~~~~~~~~~~SkL~LVDLAGSER~~kt-~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~ 490 (822)
|..|||||+||+|.+..... ....||+.||||||+||...+ .+..+...||..||+||++|..||.||..++.
T Consensus 415 Ns~SSRSHAvfQIilr~~~~------~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~ 488 (676)
T KOG0246|consen 415 NSNSSRSHAVFQIILRKHGE------FKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKS 488 (676)
T ss_pred cccccccceeEeeeeecCCc------ceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCC
Confidence 99999999999998864311 346799999999999998765 45566678999999999999999999999999
Q ss_pred CCCccCchhhhhhhhccCC-CceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhhccc
Q 003413 491 HIPYRNSKLTQLLKDSLGG-ACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKE 546 (822)
Q Consensus 491 hIPYRdSKLTrLLqDSLGG-nskT~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk~ 546 (822)
|+|||.||||++|+|||-| ||+|+||+||||...+.+.||+|||||+|+|......
T Consensus 489 H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 489 HLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred CCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCC
Confidence 9999999999999999988 9999999999999999999999999999999986443
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.7e-68 Score=601.49 Aligned_cols=334 Identities=35% Similarity=0.555 Sum_probs=295.8
Q ss_pred CCCCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhh-hcccCCeeeEeccccCCCCchhHHhhhhHHH
Q 003413 209 SGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLR-LKRLRGRHFTFDASFPDSTSQHEVYSRTTAD 287 (822)
Q Consensus 209 ~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~-~~~~~~k~F~FD~VF~~~asQeeVF~~~v~p 287 (822)
....|.|+||+||+.. ..+..+|+.+.+..+|.+..+........ ......+.|.|.+||+|+++|.+||+.++.|
T Consensus 29 ~~d~v~v~~rvrP~~~---~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~p 105 (809)
T KOG0247|consen 29 SKDPVLVVCRVRPLSD---ASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAP 105 (809)
T ss_pred hhcchheeEeecCCCC---CccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHH
Confidence 4567999999999986 34567899999999998886654443332 2234467999999999999999999999999
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhc-----------------------------
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQR----------------------------- 338 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~----------------------------- 338 (822)
+|.+++.|.|..+|+||.|||||||||+|++.++||+||+++-||..|...
T Consensus 106 lV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr 185 (809)
T KOG0247|consen 106 LVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKR 185 (809)
T ss_pred HHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999887431
Q ss_pred -----------------------------------CCCCcEEEEEEEEEEecceeeecCCCCC------C-ceEeeCCC-
Q 003413 339 -----------------------------------SCDGNHVVHLSYLEVYNETVRDLLSPGR------P-LVLREDKQ- 375 (822)
Q Consensus 339 -----------------------------------~~~~~~~V~vS~lEIYNE~V~DLL~p~~------~-L~ired~~- 375 (822)
..+..|.|+|||+|||||.|||||.+.. . ..+++|.+
T Consensus 186 ~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~ 265 (809)
T KOG0247|consen 186 EAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNG 265 (809)
T ss_pred hhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCC
Confidence 0133578999999999999999998641 2 55677766
Q ss_pred CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEeeEEEeecCCCccc
Q 003413 376 GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKLSLIDLAGSERA 455 (822)
Q Consensus 376 Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~SkL~LVDLAGSER~ 455 (822)
..||.|+++|.|.|.+|++++|+.|.++|++++|.+|..|||||+||+|.|.+...+. +.....+|.|.|||||||||.
T Consensus 266 ~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~-~s~~i~vSqlsLvDLAGSERt 344 (809)
T KOG0247|consen 266 NMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQ-DSNQITVSQLSLVDLAGSERT 344 (809)
T ss_pred CeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeeccccc-ccCceeEEeeeeeecccchhc
Confidence 5899999999999999999999999999999999999999999999999998876663 233567899999999999999
Q ss_pred ccccchhhhhHHHHhhhhhHHHHHHHHHHHhcC-----CCCCCccCchhhhhhhhccCCCceeeEEEeeCCCCCCHHHHH
Q 003413 456 LATDQRTLRSLEGANINRSLLALSSCINALVEG-----KKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQ 530 (822)
Q Consensus 456 ~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~-----~~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~~~~eETL 530 (822)
.+++..|.|++|+.+||.||++||+||.+|..+ +.+|||||||||++++.+|.|..+++||+||+|.+.+|+|++
T Consensus 345 ~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl 424 (809)
T KOG0247|consen 345 NRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENL 424 (809)
T ss_pred ccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHH
Confidence 999999999999999999999999999999874 368999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccc
Q 003413 531 NTLHWADRAKEIRTKE 546 (822)
Q Consensus 531 sTLrFA~Rak~Iknk~ 546 (822)
+.|+||..+..|....
T Consensus 425 ~vlkFaeiaq~v~v~~ 440 (809)
T KOG0247|consen 425 NVLKFAEIAQEVEVAR 440 (809)
T ss_pred HHHHHHHhcccccccC
Confidence 9999999999987654
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.2e-67 Score=605.41 Aligned_cols=315 Identities=43% Similarity=0.604 Sum_probs=283.9
Q ss_pred cCCCCchhhhcCCceEEEEec-CceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCC
Q 003413 219 LRPMSKKEKESGSRCCVRIVN-KRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRN 297 (822)
Q Consensus 219 VRPl~~~E~~~g~~~~V~v~~-~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN 297 (822)
|||+...|...|+..|+.+.. ..+|.+ +...+|+||+||+...+|.++|+.++.|+++.+++|||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~i--------------g~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gyn 66 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAI--------------GKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYN 66 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceee--------------cCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhc
Confidence 799999999999999998543 333333 34679999999999999999999999999999999999
Q ss_pred ceeeeeccCCCCcceeeccc----CCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCCCC---CceE
Q 003413 298 GSVFCYGATGAGKTYTMLGT----IENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGR---PLVL 370 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM~G~----~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p~~---~L~i 370 (822)
+|++|||||||||||||-+. .++.|+|||++++||..+..... ..|.|.|||+|||+|.|+|||.|.+ .+.+
T Consensus 67 atvlaygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~ 145 (913)
T KOG0244|consen 67 ATVLAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRLKANIKL 145 (913)
T ss_pred ceeeeecccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhhhhceec
Confidence 99999999999999999776 23459999999999999987553 6789999999999999999999753 4677
Q ss_pred eeCCCCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEeeEEEeecC
Q 003413 371 REDKQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKLSLIDLA 450 (822)
Q Consensus 371 red~~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~SkL~LVDLA 450 (822)
++.++++.+.|+++..|.+..+++..|..|...|++++|+||..|||||+||++.+++....... ....+||+|||||
T Consensus 146 ~e~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~--s~~~sKlhlVDLA 223 (913)
T KOG0244|consen 146 REPKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKR--SSFCSKLHLVDLA 223 (913)
T ss_pred cccCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhcc--chhhhhhheeecc
Confidence 77445699999999999999999999999999999999999999999999999998875444322 2346899999999
Q ss_pred CCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCCC--CCCccCchhhhhhhhccCCCceeeEEEeeCCCCCCHHH
Q 003413 451 GSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKK--HIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGE 528 (822)
Q Consensus 451 GSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~--hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~~~~eE 528 (822)
||||.+++++.|+|++|+.+||.+|++||+||+||.+.++ |||||||||||||||+||||+.|+||+||||++.+++|
T Consensus 224 GSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~E 303 (913)
T KOG0244|consen 224 GSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQE 303 (913)
T ss_pred ccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhh
Confidence 9999999999999999999999999999999999998876 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccccccc
Q 003413 529 TQNTLHWADRAKEIRTKEGEAN 550 (822)
Q Consensus 529 TLsTLrFA~Rak~Iknk~~~~n 550 (822)
|++||+||.||+.|+|+|+.++
T Consensus 304 tlnTl~ya~Rak~iknk~vvN~ 325 (913)
T KOG0244|consen 304 TLNTLRYADRAKQIKNKPVVNQ 325 (913)
T ss_pred HHHHHHHhhHHHHhcccccccc
Confidence 9999999999999999996444
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-61 Score=557.75 Aligned_cols=283 Identities=49% Similarity=0.757 Sum_probs=268.0
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCC
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCD 341 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~ 341 (822)
...|.||+||++.++|++||+..+.|++++++.|||+||||||||||||||||.|..+.+||||+++.+||+.+.....+
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~ 134 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMT 134 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred CcEEEEEEEEEEecceeeecCCCCCC-ceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCce
Q 003413 342 GNHVVHLSYLEVYNETVRDLLSPGRP-LVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSH 419 (822)
Q Consensus 342 ~~~~V~vS~lEIYNE~V~DLL~p~~~-L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH 419 (822)
..|.|.+||+|||||+++|||.+... +.++++.. |++|.|+++..+.+.+|++.+|+.|..+|+++.|.+|..|||||
T Consensus 135 ~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRsh 214 (568)
T COG5059 135 KDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSH 214 (568)
T ss_pred cceeeEeehhHHHhhHHHhhccCccccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccce
Confidence 78999999999999999999998765 67888755 89999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEEeecCCCceeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhc--CCCCCCccCc
Q 003413 420 AILQVIIEYRVKDASMNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVE--GKKHIPYRNS 497 (822)
Q Consensus 420 ~IftI~V~~~~~~~~~~~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~--~~~hIPYRdS 497 (822)
+||++.+......... ...++|+|||||||||+..++..+.+++|+..||+||.+||+||++|.+ +..|||||+|
T Consensus 215 si~~i~~~~~~~~~~~---~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyRes 291 (568)
T COG5059 215 SIFQIELASKNKVSGT---SETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRES 291 (568)
T ss_pred EEEEEEEEEeccCccc---eecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhh
Confidence 9999999988766542 2347999999999999999999999999999999999999999999998 6689999999
Q ss_pred hhhhhhhhccCCCceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhhcccc
Q 003413 498 KLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKEG 547 (822)
Q Consensus 498 KLTrLLqDSLGGnskT~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk~~ 547 (822)
||||||+++|||+|+|+|||||+|...+++||.+||+||.||+.|++++.
T Consensus 292 kLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~ 341 (568)
T COG5059 292 KLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQ 341 (568)
T ss_pred HHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCccc
Confidence 99999999999999999999999999999999999999999999999985
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1.2e-50 Score=407.79 Aligned_cols=179 Identities=46% Similarity=0.689 Sum_probs=169.9
Q ss_pred HhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceee
Q 003413 280 VYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVR 359 (822)
Q Consensus 280 VF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~ 359 (822)
||+.++ |+|+.+++|||+|||+||||||||||||+|+.+++||||+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999988 99999999999999999999999999999999999999999988
Q ss_pred ecCCCCCCceEeeCCCCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceee
Q 003413 360 DLLSPGRPLVLREDKQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIIN 439 (822)
Q Consensus 360 DLL~p~~~L~ired~~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~ 439 (822)
++.+|..|..+|.++.|.+|..|||||+||+|++.............
T Consensus 58 ---------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~~ 104 (186)
T cd01363 58 ---------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQP 104 (186)
T ss_pred ---------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccce
Confidence 78899999999999999999999999999999999876654333346
Q ss_pred EEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhccCCCceeeEEEee
Q 003413 440 RVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANI 519 (822)
Q Consensus 440 ~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDSLGGnskT~mIa~I 519 (822)
..|+|+|||||||||..+++..+.+++|+..||+||++|++||.+|+++..||||||||||+||||+|||||+|+||+||
T Consensus 105 ~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~v 184 (186)
T cd01363 105 KVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVACI 184 (186)
T ss_pred eeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 003413 520 SP 521 (822)
Q Consensus 520 SP 521 (822)
||
T Consensus 185 sP 186 (186)
T cd01363 185 SP 186 (186)
T ss_pred Cc
Confidence 98
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.71 E-value=1.1e-07 Score=111.92 Aligned_cols=209 Identities=22% Similarity=0.205 Sum_probs=130.6
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCC-C
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSC-D 341 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~-~ 341 (822)
..|.||.+|.....+..++.. ...+++..++| +++||++++|+++||.- ...++..-.+...|..+..... .
T Consensus 353 ~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~ 425 (568)
T COG5059 353 EEIKFDLSEDRSEIEILVFRE-QSQLSQSSLSG----IFAYMQSLKKETETLKS--RIDLIMKSIISGTFERKKLLKEEG 425 (568)
T ss_pred HHHHhhhhhhhhhhhhHHHHH-HHhhhhhhhhh----HHHHHhhhhhhhhcccc--hhhhhhhhhhhhhhhhhhhhhhhH
Confidence 478999999998888888864 56677888888 99999999999999932 2345666666777776654322 2
Q ss_pred CcEEEEEEEEEEecceeeecCCCC--CCce--EeeCCCCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCC
Q 003413 342 GNHVVHLSYLEVYNETVRDLLSPG--RPLV--LREDKQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSR 417 (822)
Q Consensus 342 ~~~~V~vS~lEIYNE~V~DLL~p~--~~L~--ired~~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSR 417 (822)
+.+...+-++++|-....++.... .... ......+.-...+.........+..... .+...+....+..|..+++
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~ 504 (568)
T COG5059 426 WKYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESE-KASKLRSSASTKLNLRSSR 504 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhh-hhccchhhcccchhhhhcc
Confidence 223333344444411111222111 0000 0000000000000011111111222222 5577888999999999999
Q ss_pred ceeEEEEEEEEEeecCCCceeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHh
Q 003413 418 SHAILQVIIEYRVKDASMNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALV 486 (822)
Q Consensus 418 SH~IftI~V~~~~~~~~~~~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa 486 (822)
+|++|............. .. ++.|||||+||. -...-|.++++..++|++|..++.+|.++.
T Consensus 505 ~~~~~~~~~~~~~~~~~~-----~~-~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 505 SHSKFRDHLNGSNSSTKE-----LS-LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred cchhhhhcccchhhhhHH-----HH-hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 999997655332222111 11 799999999999 888999999999999999999999998764
No 31
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.53 E-value=0.028 Score=65.57 Aligned_cols=91 Identities=24% Similarity=0.461 Sum_probs=62.6
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeeccc---CCCCchHH----HHHHHHHHhh
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGT---IENPGVMV----LAIKDLFTKI 335 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~---~e~~GIIp----Ral~~LF~~i 335 (822)
..|....-|.|.-+|-. ++..||+.+-.|...-+ ..|.|||||||||--- ...|-||- -.+.+||...
T Consensus 3 ~~F~l~s~f~PaGDQP~----AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Ef 77 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE----AIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEF 77 (663)
T ss_pred CceEeccCCCCCCCcHH----HHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHH
Confidence 35777777889888864 56677887777765544 4699999999999431 11122211 1456788877
Q ss_pred hhcCCCCcEEEEEEEEEEeccee
Q 003413 336 RQRSCDGNHVVHLSYLEVYNETV 358 (822)
Q Consensus 336 ~~~~~~~~~~V~vS~lEIYNE~V 358 (822)
+.--.+......|||+..|.-..
T Consensus 78 k~fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 78 KEFFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred HHhCcCcceEEEeeeccccCccc
Confidence 77666777788999999996543
No 32
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.57 E-value=0.14 Score=59.85 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=25.1
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceeecc
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTMLG 316 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM~G 316 (822)
.+..++..-++.|+.-|+||||||.||+.
T Consensus 249 ~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 249 RLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 44667788899999999999999999954
No 33
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.25 E-value=0.067 Score=56.07 Aligned_cols=49 Identities=29% Similarity=0.462 Sum_probs=30.2
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..|+||.-+.. .+++..|. .+..+.+.--..+| .+|-||++|+||||.|
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~-~~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL 51 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYA-AAKAIAENPGERYN-PLFLYGPSGLGKTHLL 51 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHH-HHHHHHHSTTTSSS-EEEEEESTTSSHHHHH
T ss_pred CCCccccCCcC-CcHHHHHH-HHHHHHhcCCCCCC-ceEEECCCCCCHHHHH
Confidence 46999987654 44666775 34444444111233 4789999999999987
No 34
>PRK06893 DNA replication initiation factor; Validated
Probab=90.95 E-value=0.18 Score=52.99 Aligned_cols=48 Identities=15% Similarity=0.195 Sum_probs=32.8
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeec
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
...++||..+... +..- +.-+.+.+-.++|..++-||++|+||||.+.
T Consensus 10 ~~~~~fd~f~~~~-~~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 10 IDDETLDNFYADN-NLLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CCcccccccccCC-hHHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 4568899988654 2222 2222333445788889999999999999883
No 35
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=90.80 E-value=0.55 Score=57.19 Aligned_cols=86 Identities=31% Similarity=0.502 Sum_probs=57.4
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCC
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDG 342 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~ 342 (822)
..+.|+.+......+..-+.. ..+.+..++++++.. +|++|++.+.....|++-+.+..++........
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 94 (670)
T KOG0239|consen 26 KRFELARVYSPSVGQPSLFSD-VQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDLANSDKT-- 94 (670)
T ss_pred cccCccccccccccccccCCc-cccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccccccCCC--
Confidence 456777776654444333432 334445556666554 899999999988889988888888775433221
Q ss_pred cEEEEEEEEEEecceeeecCCC
Q 003413 343 NHVVHLSYLEVYNETVRDLLSP 364 (822)
Q Consensus 343 ~~~V~vS~lEIYNE~V~DLL~p 364 (822)
.. .++.|++.+.|++..
T Consensus 95 ---~~--~~~~~~~~~~~~~~~ 111 (670)
T KOG0239|consen 95 ---SN--VVEAYNERLRDLLSE 111 (670)
T ss_pred ---ch--hHHHHHHHHhhhccc
Confidence 11 678899999999864
No 36
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.37 E-value=0.19 Score=55.55 Aligned_cols=30 Identities=27% Similarity=0.517 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+.+++..+++--++.|+.-|+||||||.||
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 456777788899999999999999999998
No 37
>PRK06620 hypothetical protein; Validated
Probab=88.79 E-value=0.24 Score=51.89 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=33.7
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCC---ceeeeeccCCCCcceeec
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRN---GSVFCYGATGAGKTYTML 315 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN---~tIfAYGQTGSGKTyTM~ 315 (822)
...|+||..+.. .++...|.. +..+.+. -|+| -.++-||++|+||||.+.
T Consensus 10 ~~~~tfd~Fvvg-~~N~~a~~~-~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIVS-SSNDQAYNI-IKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEec-ccHHHHHHH-HHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 457899987765 445567764 3333331 1444 358999999999999983
No 38
>PRK12377 putative replication protein; Provisional
Probab=87.75 E-value=0.35 Score=51.97 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=35.4
Q ss_pred eEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeec
Q 003413 265 FTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 265 F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
.+||.-......|..++. .+..+++.+..+. ..|+-||++|+||||.+.
T Consensus 71 ~tFdnf~~~~~~~~~a~~-~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~ 119 (248)
T PRK12377 71 CSFANYQVQNDGQRYALS-QAKSIADELMTGC-TNFVFSGKPGTGKNHLAA 119 (248)
T ss_pred CCcCCcccCChhHHHHHH-HHHHHHHHHHhcC-CeEEEECCCCCCHHHHHH
Confidence 467765544556666775 4667777776654 468899999999999984
No 39
>PRK08116 hypothetical protein; Validated
Probab=87.29 E-value=0.33 Score=52.54 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=36.0
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHHHHHc--CCCceeeeeccCCCCcceeec
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVEAVLQ--GRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~--GyN~tIfAYGQTGSGKTyTM~ 315 (822)
..++||.-. .+..+...|. .+...++.+.. ..+..++-||.+|+||||.+.
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred Hhcchhccc-CChHHHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 356787644 3456666775 56677777654 345569999999999999873
No 40
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.98 E-value=0.96 Score=50.09 Aligned_cols=27 Identities=41% Similarity=0.715 Sum_probs=20.3
Q ss_pred HHHHHHc-CCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQ-GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~-GyN~tIfAYGQTGSGKTyTM 314 (822)
.+..++. +...+++.||++|+|||+++
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3444444 45568999999999999876
No 41
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=86.85 E-value=0.34 Score=56.00 Aligned_cols=50 Identities=26% Similarity=0.383 Sum_probs=31.9
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
...|+||.-... ..+...|. .+..+.+.--..|| .+|-||++|+||||.+
T Consensus 116 ~~~~tfd~fv~g-~~n~~a~~-~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 116 NPKYTFDNFVVG-KSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLL 165 (450)
T ss_pred CCCCcccccccC-CCcHHHHH-HHHHHHhCcCccCC-eEEEECCCCCCHHHHH
Confidence 457889884432 34555665 34444443212344 4888999999999998
No 42
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=86.60 E-value=1 Score=51.19 Aligned_cols=51 Identities=33% Similarity=0.568 Sum_probs=32.5
Q ss_pred HHHHHHcCCCce-eeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEE
Q 003413 288 LVEAVLQGRNGS-VFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEV 353 (822)
Q Consensus 288 LV~svL~GyN~t-IfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEI 353 (822)
++..++.|.-.. ++.||.||||||.|+ ..+++++........ .+.+-|.++
T Consensus 32 ~l~~~~~~~~p~n~~iyG~~GTGKT~~~--------------~~v~~~l~~~~~~~~-~~yINc~~~ 83 (366)
T COG1474 32 FLAPALRGERPSNIIIYGPTGTGKTATV--------------KFVMEELEESSANVE-VVYINCLEL 83 (366)
T ss_pred HHHHHhcCCCCccEEEECCCCCCHhHHH--------------HHHHHHHHhhhccCc-eEEEeeeeC
Confidence 345555554444 999999999999987 666666655433222 455555544
No 43
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=85.94 E-value=0.36 Score=58.12 Aligned_cols=51 Identities=27% Similarity=0.403 Sum_probs=34.9
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeec
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
...|+||..+-.. ++..+|. .+..+++..-.+||. ||-||.+|+||||.+.
T Consensus 282 ~~~~TFDnFvvG~-sN~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 282 NPKYTFDTFVIGA-SNRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred CCCCCHhhhcCCC-ccHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence 3579999866443 3444553 445555543346775 8999999999999984
No 44
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.65 E-value=0.48 Score=50.07 Aligned_cols=48 Identities=17% Similarity=0.394 Sum_probs=31.3
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeec
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
+..|+||.-+.. .+...+.. +..++. ......++-||++|+||||.+.
T Consensus 16 ~~~~~fd~f~~~--~n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 16 PDDETFASFYPG--DNDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCcCCccccccC--ccHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 346788876644 45556643 333332 2223478999999999999983
No 45
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=85.56 E-value=0.47 Score=54.99 Aligned_cols=50 Identities=22% Similarity=0.373 Sum_probs=33.6
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeec
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
...|+||.-+.. .++...|.. +..+.++ -..||. +|-||++|+||||.|.
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~-~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHA-ALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCCcccccccC-CchHHHHHH-HHHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 457899986643 455566653 3344433 122665 9999999999999983
No 46
>PRK07952 DNA replication protein DnaC; Validated
Probab=85.25 E-value=0.52 Score=50.60 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=33.1
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeec
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
..+||.-......|..++.. +..+++.+..|+ ..++.||.+|+||||.+.
T Consensus 68 ~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~ 117 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAA 117 (244)
T ss_pred CCccccccCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHH
Confidence 45677644334556667653 455556554443 368999999999999883
No 47
>PRK05642 DNA replication initiation factor; Validated
Probab=85.19 E-value=0.65 Score=49.10 Aligned_cols=46 Identities=20% Similarity=0.463 Sum_probs=28.9
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHHHHHc---CC-CceeeeeccCCCCcceee
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQ---GR-NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~---Gy-N~tIfAYGQTGSGKTyTM 314 (822)
...|+||.-+.. . +..++ ..++...+ ++ ...++-||.+|+||||.+
T Consensus 13 ~~~~tfdnF~~~-~-~~~a~-----~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl 62 (234)
T PRK05642 13 RDDATFANYYPG-A-NAAAL-----GYVERLCEADAGWTESLIYLWGKDGVGRSHLL 62 (234)
T ss_pred CCcccccccCcC-C-hHHHH-----HHHHHHhhccccCCCCeEEEECCCCCCHHHHH
Confidence 346889987743 2 23333 33333322 22 246889999999999987
No 48
>PRK06526 transposase; Provisional
Probab=85.04 E-value=0.38 Score=51.77 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=25.6
Q ss_pred cCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeecc
Q 003413 271 FPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLG 316 (822)
Q Consensus 271 F~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G 316 (822)
+.+.-++..+..-...+.++ .+.| |+.||++|+||||.+.+
T Consensus 77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 44444554454433333333 3444 79999999999999854
No 49
>PRK06835 DNA replication protein DnaC; Validated
Probab=85.03 E-value=0.35 Score=54.03 Aligned_cols=36 Identities=22% Similarity=0.479 Sum_probs=26.5
Q ss_pred hHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeec
Q 003413 278 HEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 278 eeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
..+++ .+...++++-.+. -.|+-||++|+||||.+.
T Consensus 166 ~~~~~-~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~ 201 (329)
T PRK06835 166 EKILE-KCKNFIENFDKNN-ENLLFYGNTGTGKTFLSN 201 (329)
T ss_pred HHHHH-HHHHHHHHHhccC-CcEEEECCCCCcHHHHHH
Confidence 34554 3556777776554 569999999999999873
No 50
>PRK09087 hypothetical protein; Validated
Probab=84.90 E-value=0.43 Score=50.36 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=31.8
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeec
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
...|+||.-+.... +..+|.. +.....-.+-.++-||++||||||.+.
T Consensus 15 ~~~~~~~~Fi~~~~-N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 15 DPAYGRDDLLVTES-NRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCChhceeecCc-hHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 34688998775433 4457762 333222235568999999999999984
No 51
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=84.88 E-value=0.51 Score=53.67 Aligned_cols=50 Identities=26% Similarity=0.385 Sum_probs=31.5
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
...|+||.-.. ...+...|. .+..+.+.--..|| .++-||++|+||||.+
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~-~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLL 153 (405)
T ss_pred CCCCccccccc-CCcHHHHHH-HHHHHHhCcCccCC-eEEEECCCCCcHHHHH
Confidence 45789998443 344555664 34444443111234 4788999999999988
No 52
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=84.28 E-value=0.56 Score=45.59 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=23.7
Q ss_pred hhHHhhhhHHHHHHHHHcC-CCceeeeeccCCCCcceeecc
Q 003413 277 QHEVYSRTTADLVEAVLQG-RNGSVFCYGATGAGKTYTMLG 316 (822)
Q Consensus 277 QeeVF~~~v~pLV~svL~G-yN~tIfAYGQTGSGKTyTM~G 316 (822)
|.++... +++.+-.+ ....++..++||||||++|+.
T Consensus 8 Q~~ai~~----i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 8 QQEAIAR----IINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHH----HHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHH----HHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 5444443 34443333 356677888999999999964
No 53
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=83.58 E-value=0.75 Score=42.08 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=19.0
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+...+.......++.+|++|+|||+++
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333333434557889999999999766
No 54
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=83.57 E-value=0.49 Score=51.00 Aligned_cols=129 Identities=22% Similarity=0.301 Sum_probs=71.9
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCc-eeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCC
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNG-SVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDG 342 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~-tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~ 342 (822)
...+|...+-+...+.+.+. ...++.|..+ -++.||..|+|||.++ ..|+.......
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~N-----t~~Fl~G~pannvLL~G~rGtGKSSlV--------------kall~~y~~~G--- 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIEN-----TEQFLQGLPANNVLLWGARGTGKSSLV--------------KALLNEYADQG--- 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHH-----HHHHHcCCCCcceEEecCCCCCHHHHH--------------HHHHHHHhhcC---
Confidence 34556666554434444433 3677788766 3777999999998876 44444433322
Q ss_pred cEEEEEEEEEEecceeeecCCCCCCceEeeCCC--CeEecCcEEEE-cCCHHHHHHHHHhhhccCcccccCCCCCCCCce
Q 003413 343 NHVVHLSYLEVYNETVRDLLSPGRPLVLREDKQ--GILAAGLTQYR-AYSTDEVMALLQRGNQNRTTEPTRANETSSRSH 419 (822)
Q Consensus 343 ~~~V~vS~lEIYNE~V~DLL~p~~~L~ired~~--Gv~V~gLtev~-V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH 419 (822)
+-.+||..+.+.||-.--..+ +..+. =+++.+|+=-. =.++..+..+|.-|...| ....-+..+|.|-|
T Consensus 81 -----LRlIev~k~~L~~l~~l~~~l--~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRH 152 (249)
T PF05673_consen 81 -----LRLIEVSKEDLGDLPELLDLL--RDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRH 152 (249)
T ss_pred -----ceEEEECHHHhccHHHHHHHH--hcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhh
Confidence 556888888777663200000 00111 13344444111 123566777776665443 45555677888888
Q ss_pred eEE
Q 003413 420 AIL 422 (822)
Q Consensus 420 ~If 422 (822)
.|=
T Consensus 153 Lv~ 155 (249)
T PF05673_consen 153 LVP 155 (249)
T ss_pred ccc
Confidence 765
No 55
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=83.20 E-value=0.63 Score=53.54 Aligned_cols=51 Identities=27% Similarity=0.427 Sum_probs=32.3
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeec
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
...|+||.-... .++.-.|.. + .-|...-.+.---||-||.+|+||||.|.
T Consensus 81 ~~~ytFdnFv~g-~~N~~A~aa-~-~~va~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFVVG-PSNRLAYAA-A-KAVAENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhheeeC-CchHHHHHH-H-HHHHhccCCcCCcEEEECCCCCCHHHHHH
Confidence 457999986654 455555542 2 22232222333458999999999999983
No 56
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=82.35 E-value=1 Score=50.38 Aligned_cols=27 Identities=37% Similarity=0.598 Sum_probs=19.9
Q ss_pred HHHHHHc-CCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQ-GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~-GyN~tIfAYGQTGSGKTyTM 314 (822)
.+..++. +....++-||++|+|||+++
T Consensus 45 ~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 45 ALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 3344444 44567899999999999986
No 57
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=81.65 E-value=1 Score=46.20 Aligned_cols=47 Identities=19% Similarity=0.360 Sum_probs=31.2
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
...|+||....+ .+..++.. +..++ ..+....|+-||++|+||||.+
T Consensus 9 ~~~~~~~~~~~~--~~~~~~~~-l~~~~---~~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 9 PDDPTFDNFYAG--GNAELLAA-LRQLA---AGKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCchhhcCcCcC--CcHHHHHH-HHHHH---hcCCCCeEEEECCCCCCHHHHH
Confidence 345788876632 34445543 23322 2566778999999999999987
No 58
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=81.41 E-value=2 Score=52.37 Aligned_cols=89 Identities=24% Similarity=0.452 Sum_probs=56.3
Q ss_pred eEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeecccCC---CCchHH----HHHHHHHHhhhh
Q 003413 265 FTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIE---NPGVMV----LAIKDLFTKIRQ 337 (822)
Q Consensus 265 F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e---~~GIIp----Ral~~LF~~i~~ 337 (822)
|....-|.|.-.|..-|.. +++.+-+|...- ..+|.|||||||||..-.. .+-||- ..+.+|+..+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 4444558888889887764 555555664333 3789999999999965321 122211 234556666555
Q ss_pred cCCCCcEEEEEEEEEEeccee
Q 003413 338 RSCDGNHVVHLSYLEVYNETV 358 (822)
Q Consensus 338 ~~~~~~~~V~vS~lEIYNE~V 358 (822)
--.+......|||+..|.-..
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred hCCCCeEEEEeeecccCCccc
Confidence 444445778899999986543
No 59
>PRK08939 primosomal protein DnaI; Reviewed
Probab=81.35 E-value=0.82 Score=50.62 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=33.1
Q ss_pred eEeccccCCCCchhHHhhhhHHHHHHHHHcC-CCceeeeeccCCCCcceeecc
Q 003413 265 FTFDASFPDSTSQHEVYSRTTADLVEAVLQG-RNGSVFCYGATGAGKTYTMLG 316 (822)
Q Consensus 265 F~FD~VF~~~asQeeVF~~~v~pLV~svL~G-yN~tIfAYGQTGSGKTyTM~G 316 (822)
.+||.+-.....+..++.. +...++....| ..-.|+-||++|+||||.+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 4555543333356667763 45666665543 234699999999999999844
No 60
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=80.52 E-value=1.4 Score=45.71 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=30.8
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
...|+||..+.. ..+ .++. .++.++.. .+.+..|+-||.+|+||||.+
T Consensus 12 ~~~~~~d~f~~~-~~~-~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 12 PPPPTFDNFVAG-ENA-ELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CChhhhcccccC-CcH-HHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 456889998732 222 3333 34444331 234567999999999999987
No 61
>PRK08181 transposase; Validated
Probab=80.00 E-value=1.1 Score=48.70 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=17.4
Q ss_pred cCCCceeeeeccCCCCcceeecc
Q 003413 294 QGRNGSVFCYGATGAGKTYTMLG 316 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM~G 316 (822)
.|.| |+-||++|+||||.+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4555 89999999999998854
No 62
>PRK08727 hypothetical protein; Validated
Probab=79.97 E-value=1.1 Score=47.46 Aligned_cols=45 Identities=18% Similarity=0.314 Sum_probs=27.2
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCC-ceeeeeccCCCCcceee
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRN-GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN-~tIfAYGQTGSGKTyTM 314 (822)
...|+||.-+.... + .... +.. +..|+. -.|+-||++|+||||.+
T Consensus 13 ~~~~~f~~f~~~~~-n--~~~~-~~~----~~~~~~~~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 13 PSDQRFDSYIAAPD-G--LLAQ-LQA----LAAGQSSDWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CCcCChhhccCCcH-H--HHHH-HHH----HHhccCCCeEEEECCCCCCHHHHH
Confidence 34678888664333 2 2221 122 222333 35999999999999987
No 63
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=79.60 E-value=39 Score=39.10 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 562 DQAKLLLELQKENRELRVQMARQQQRL 588 (822)
Q Consensus 562 d~~~li~eLq~Ei~~Lr~eL~~~q~~i 588 (822)
....-|+.|+.||++||..|...|+..
T Consensus 250 ~~~~hi~~l~~EveRlrt~l~~Aqk~~ 276 (552)
T KOG2129|consen 250 AEKLHIDKLQAEVERLRTYLSRAQKSY 276 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999998887643
No 64
>PRK10436 hypothetical protein; Provisional
Probab=79.17 E-value=0.98 Score=52.84 Aligned_cols=27 Identities=37% Similarity=0.583 Sum_probs=22.4
Q ss_pred HHHHHcCCCceeeeeccCCCCcceeec
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
+..++..-++.|+..|+||||||.||+
T Consensus 210 l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 210 FRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 445566678899999999999999983
No 65
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=78.76 E-value=0.97 Score=54.03 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=23.7
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceeec
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
.+..++..-++.|+..|+||||||.||+
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4566677778999999999999999984
No 66
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=77.85 E-value=1.1 Score=52.01 Aligned_cols=48 Identities=23% Similarity=0.361 Sum_probs=31.3
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.|+||.-+.. .+++..|. .+..++.+--..|| .+|-||.+|+||||.|
T Consensus 111 ~~tFdnFv~g-~~n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl 158 (450)
T PRK14087 111 ENTFENFVIG-SSNEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLL 158 (450)
T ss_pred ccchhcccCC-CcHHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHH
Confidence 4899986654 34555664 34444432111244 4889999999999998
No 67
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=77.48 E-value=0.77 Score=41.52 Aligned_cols=17 Identities=41% Similarity=0.481 Sum_probs=14.7
Q ss_pred eeeeccCCCCcceeecc
Q 003413 300 VFCYGATGAGKTYTMLG 316 (822)
Q Consensus 300 IfAYGQTGSGKTyTM~G 316 (822)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57899999999999854
No 68
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=77.32 E-value=1.3 Score=52.19 Aligned_cols=28 Identities=32% Similarity=0.561 Sum_probs=22.9
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceeec
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
.+..++..-++.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3455667777889999999999999983
No 69
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=76.18 E-value=2.1 Score=46.13 Aligned_cols=51 Identities=22% Similarity=0.222 Sum_probs=34.4
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeecc
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLG 316 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G 316 (822)
++|.|..+-.....+..+|.. +..+++.+-+|. .++-||++|+||||...+
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~--nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALED-LASLVEFFERGE--NLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CCcccccccCCcchhHHHHHH-HHHHHHHhccCC--cEEEECCCCCcHHHHHHH
Confidence 455554444445567788864 566766666443 467899999999998743
No 70
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=76.05 E-value=2.4 Score=47.54 Aligned_cols=52 Identities=19% Similarity=0.292 Sum_probs=29.0
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHH-HHHc--CC--CceeeeeccCCCCcceee
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVE-AVLQ--GR--NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~-svL~--Gy--N~tIfAYGQTGSGKTyTM 314 (822)
..+.||.+.+-+.--+++.+.+..|+.. ..+. |. ...|+-||++|+|||+++
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3456666666543333444333333332 1121 22 335899999999999876
No 71
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=75.88 E-value=3.6 Score=51.73 Aligned_cols=27 Identities=33% Similarity=0.596 Sum_probs=20.0
Q ss_pred HHHHHHc--CCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQ--GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~--GyN~tIfAYGQTGSGKTyTM 314 (822)
++..++. |-+.+||.||++|+|||.|+
T Consensus 770 fL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 770 FLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 3444443 44567889999999999987
No 72
>PF13245 AAA_19: Part of AAA domain
Probab=75.74 E-value=1.4 Score=39.01 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=17.8
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
|..++. -+..++..|+.|||||+|+
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHH
Confidence 444555 3444555999999999997
No 73
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=74.99 E-value=0.92 Score=42.21 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=13.1
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
+.+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999886
No 74
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=74.69 E-value=1.4 Score=42.48 Aligned_cols=26 Identities=38% Similarity=0.718 Sum_probs=19.7
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceeec
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
++..++.|.| ++..|+||||||+...
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 3445556666 7889999999999874
No 75
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=74.63 E-value=2 Score=49.31 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=33.2
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHH-HHHc--C--CCceeeeeccCCCCcceee
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVE-AVLQ--G--RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~-svL~--G--yN~tIfAYGQTGSGKTyTM 314 (822)
..++|+.|-+.+.--+++-+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3567788777644444455444445543 3333 2 2346899999999999876
No 76
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=73.83 E-value=1.2 Score=40.11 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=15.2
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..++-+|++|||||+++
T Consensus 3 ~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 3 EVILIVGPPGSGKTTLA 19 (148)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 46789999999999987
No 77
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=73.47 E-value=1.3 Score=47.26 Aligned_cols=18 Identities=39% Similarity=0.720 Sum_probs=15.7
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
.+.|+..|.||||||.+|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 566778899999999998
No 78
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=73.10 E-value=1.8 Score=48.51 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=19.4
Q ss_pred HHHHcCCCceeeeeccCCCCcceee
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..++.--.+.|+..|+||||||.||
T Consensus 115 ~~~~~~~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 115 RELAERPRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred HHHHhhcCcEEEEECCCCCCHHHHH
Confidence 3344334577999999999999998
No 79
>PRK06921 hypothetical protein; Provisional
Probab=72.60 E-value=2.8 Score=45.46 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=24.2
Q ss_pred HHhhhhHHHHHHHHHc---CCCceeeeeccCCCCcceeec
Q 003413 279 EVYSRTTADLVEAVLQ---GRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 279 eVF~~~v~pLV~svL~---GyN~tIfAYGQTGSGKTyTM~ 315 (822)
.+|. .+...++++-. +....|+-||++|+||||.+.
T Consensus 97 ~~~~-~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 97 DAYE-CAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLT 135 (266)
T ss_pred HHHH-HHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHH
Confidence 3443 34556665532 234568999999999999883
No 80
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=72.52 E-value=1.7 Score=43.93 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..|.+.+-.|.+.+++.||+.|+|||+.|
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 344444445677889999999999999976
No 81
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=72.31 E-value=1.4 Score=45.41 Aligned_cols=18 Identities=44% Similarity=0.743 Sum_probs=16.1
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
++.|+..|+||||||.+|
T Consensus 1 ~GlilI~GptGSGKTTll 18 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTL 18 (198)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 367899999999999998
No 82
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=72.26 E-value=2 Score=48.99 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=16.8
Q ss_pred CCceeeeeccCCCCcceee
Q 003413 296 RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 296 yN~tIfAYGQTGSGKTyTM 314 (822)
.++.|+..|+||||||+||
T Consensus 148 ~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 4567889999999999998
No 83
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=71.73 E-value=2.3 Score=46.01 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=20.9
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..++..-.+.|+..|.||||||.||
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 45555555677889999999999998
No 84
>PF12846 AAA_10: AAA-like domain
Probab=71.41 E-value=1.4 Score=46.42 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=15.8
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
|.-++..|.||||||++|
T Consensus 1 n~h~~i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL 18 (304)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 556789999999999988
No 85
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=70.92 E-value=2.1 Score=47.24 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=20.5
Q ss_pred HHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 287 DLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 287 pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.++..++.+ ...|+..|.||||||.+|
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 445555553 456889999999999987
No 86
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=70.91 E-value=35 Score=41.27 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003413 562 DQAKLLLELQKENRELRVQMARQQQRLLALEAQALA 597 (822)
Q Consensus 562 d~~~li~eLq~Ei~~Lr~eL~~~q~~i~~le~q~~a 597 (822)
.....+.+|+.||.+|+.++++++..+..+++++..
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~ 461 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELER 461 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788899999999999999888888877643
No 87
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=70.84 E-value=2.2 Score=48.36 Aligned_cols=20 Identities=45% Similarity=0.719 Sum_probs=17.9
Q ss_pred CCCceeeeeccCCCCcceee
Q 003413 295 GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 295 GyN~tIfAYGQTGSGKTyTM 314 (822)
--.+.|+..|+||||||.||
T Consensus 132 ~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 35689999999999999998
No 88
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=70.78 E-value=2.3 Score=43.72 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=20.2
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.|..++...+..++..|..||||||+|
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 345555555556667899999999988
No 89
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=70.34 E-value=3.4 Score=43.61 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=18.4
Q ss_pred HHHcCCCceeeeeccCCCCcceee
Q 003413 291 AVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 291 svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..+....+.++.+|++|+|||+++
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHH
Confidence 334444667889999999999876
No 90
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=70.27 E-value=3.1 Score=47.43 Aligned_cols=51 Identities=24% Similarity=0.327 Sum_probs=29.3
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHH-HHHc--C--CCceeeeeccCCCCcceee
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVE-AVLQ--G--RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~-svL~--G--yN~tIfAYGQTGSGKTyTM 314 (822)
.++||.|.+-+..-+++.+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 456666655433334444444344433 2222 2 2346899999999999765
No 91
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=70.22 E-value=1.5 Score=45.46 Aligned_cols=16 Identities=38% Similarity=0.750 Sum_probs=13.5
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
-+..+|.||||||+|+
T Consensus 25 H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTV 40 (229)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3456799999999998
No 92
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=69.67 E-value=2.9 Score=48.67 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=32.7
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHHHH--HcC--CCceeeeeccCCCCcceee
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVEAV--LQG--RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~sv--L~G--yN~tIfAYGQTGSGKTyTM 314 (822)
...|+||.-+.. .++...|. .+..+.+.. ..| || .+|-||++|+||||.+
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~-~a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl 158 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHR-ILQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLM 158 (445)
T ss_pred CccccccceeeC-CcHHHHHH-HHHHHHhccccccCCCCc-eEEEEcCCCCCHHHHH
Confidence 457999986643 45555564 444454432 223 44 3678999999999998
No 93
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=69.32 E-value=27 Score=37.94 Aligned_cols=29 Identities=34% Similarity=0.332 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 568 LELQKENRELRVQMARQQQRLLALEAQAL 596 (822)
Q Consensus 568 ~eLq~Ei~~Lr~eL~~~q~~i~~le~q~~ 596 (822)
.+|++++..|..+++++++-+..||....
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~ 30 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLA 30 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655555555543
No 94
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=68.97 E-value=1.6 Score=51.44 Aligned_cols=107 Identities=11% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccccCCccccccCCccCh---hhhhcc
Q 003413 566 LLLELQKENRELRVQMARQQQRLLALEAQALAANSPTPSSVSSLLTPPSTAHPNEKRKPRSSFLHGNCFTP---ELKRKV 642 (822)
Q Consensus 566 li~eLq~Ei~~Lr~eL~~~q~~i~~le~q~~a~~~~~~s~~~~~~~~~~~~~~~e~~k~~~~~l~~~~~~~---e~k~~~ 642 (822)
..++|++||..|++.|....+++..-|.+.+.....+- |....+-+.+.... ..-..+
T Consensus 370 ~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~-------------------Kll~qyq~RLedSE~RLr~QQ~e 430 (495)
T PF12004_consen 370 EVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQ-------------------KLLLQYQARLEDSEERLRRQQEE 430 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------------------HHHHHHHHhhhhhHHHHHHHhhh
Confidence 44558889999998888887777666655544432211 11111111111111 111111
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhc
Q 003413 643 APEGFRELQQTVKTLEAEIEKMKKDHALQLKQKDDVIRELKRKSDKQLE 691 (822)
Q Consensus 643 ~ee~~~el~~~~k~le~ele~~~~~~~~ql~~k~~li~el~~~~~~~~~ 691 (822)
.+..|+..-.++-..|+||.+...++.+-++.|.++|++=++++....+
T Consensus 431 Kd~qmksII~RL~~vEeELrre~~~m~~~~~~kqrii~aQ~~~i~~Lda 479 (495)
T PF12004_consen 431 KDSQMKSIISRLMAVEEELRREHAEMQAVLDHKQRIIDAQEKRIAALDA 479 (495)
T ss_dssp -------------------------------------------------
T ss_pred hHHHHHHHHhhhhhhhhhhhhhHHHHhcccccchHHHHHhhhhcccccc
Confidence 2335666666677888888887777777788899999887777654443
No 95
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=68.85 E-value=2.8 Score=47.27 Aligned_cols=37 Identities=19% Similarity=0.435 Sum_probs=28.1
Q ss_pred CCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 274 STSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 274 ~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..|+.+|+.++..+. ......+|.-|.-|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 3569999987655443 344457799999999999987
No 96
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=68.35 E-value=4 Score=47.56 Aligned_cols=16 Identities=44% Similarity=0.742 Sum_probs=14.0
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999998876
No 97
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=68.24 E-value=3.9 Score=45.65 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=23.5
Q ss_pred HhhhhHHHHHHHHHcC-CCceeeeeccCCCCcceee
Q 003413 280 VYSRTTADLVEAVLQG-RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 280 VF~~~v~pLV~svL~G-yN~tIfAYGQTGSGKTyTM 314 (822)
++++.+-.++.+.+.+ .---.+-||+.|+|||.|.
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 3444444455555555 3335778999999999997
No 98
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=67.35 E-value=3.3 Score=42.14 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=15.8
Q ss_pred CceeeeeccCCCCcceeecc
Q 003413 297 NGSVFCYGATGAGKTYTMLG 316 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM~G 316 (822)
.-.|+-||++|+||||...+
T Consensus 47 ~~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp --EEEEEESTTSSHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHH
Confidence 34589999999999998744
No 99
>PRK09183 transposase/IS protein; Provisional
Probab=66.51 E-value=3.3 Score=44.62 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=15.9
Q ss_pred cCCCceeeeeccCCCCcceeec
Q 003413 294 QGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
.|.| |+-+|++|+||||.+.
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAI 120 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHH
Confidence 4554 5679999999999873
No 100
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=65.97 E-value=3.1 Score=46.39 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 287 DLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 287 pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.++..++.+ ...|+..|.||||||++|
T Consensus 139 ~~L~~~v~~-~~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 139 EAIIAAVRA-HRNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 455656654 356777799999999776
No 101
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=65.13 E-value=6.7 Score=42.55 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=30.5
Q ss_pred CCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEE
Q 003413 295 GRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEV 353 (822)
Q Consensus 295 GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEI 353 (822)
.-+.+|.-||+-|||||+.| ..+.+.+........+.|.++.+..
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l--------------~~l~~~L~~~~~~~~~~i~fn~w~~ 62 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL--------------NMLKEELKEDNKEKYIFIYFNAWEY 62 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH--------------HHHHHHHhcccccceeeEEEccccC
Confidence 56778999999999999976 5566666554223344555555553
No 102
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=64.01 E-value=4.4 Score=44.60 Aligned_cols=30 Identities=33% Similarity=0.565 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..++++++.--.-+.|+..|.|||||+.||
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhH
Confidence 456677777777889999999999999998
No 103
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=63.28 E-value=4.7 Score=43.90 Aligned_cols=41 Identities=29% Similarity=0.359 Sum_probs=25.5
Q ss_pred EeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 266 TFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 266 ~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+||.+.+ |.++.+. +...+-.|....++-||++|+|||+++
T Consensus 13 ~~~~~~g----~~~~~~~----L~~~~~~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 13 LLEDILG----QDEVVER----LSRAVDSPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred cHHHhcC----CHHHHHH----HHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 4677664 4444432 222222444345889999999999987
No 104
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=63.27 E-value=3.8 Score=45.91 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 287 DLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 287 pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.++..++.+. ..|+..|.||||||.+|
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 4445555432 35788999999999998
No 105
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=63.13 E-value=3.8 Score=41.53 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=20.6
Q ss_pred HHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..+++..++.. ...++-.|+||||||.+|
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 44455555554 345778899999999887
No 106
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.05 E-value=5 Score=45.69 Aligned_cols=47 Identities=23% Similarity=0.359 Sum_probs=28.0
Q ss_pred EeccccCCCCchhHHhhhhHHHHHH-HHHc--CCCc--eeeeeccCCCCcce
Q 003413 266 TFDASFPDSTSQHEVYSRTTADLVE-AVLQ--GRNG--SVFCYGATGAGKTY 312 (822)
Q Consensus 266 ~FD~VF~~~asQeeVF~~~v~pLV~-svL~--GyN~--tIfAYGQTGSGKTy 312 (822)
+|+.|=+-+.--++|.+.+--||.+ ..++ |..- .|+.||+.|+|||-
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTL 200 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTL 200 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHH
Confidence 3444433333335666666666654 3333 4443 58999999999974
No 107
>PF13479 AAA_24: AAA domain
Probab=62.23 E-value=3 Score=43.42 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=16.0
Q ss_pred CceeeeeccCCCCcceeec
Q 003413 297 NGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM~ 315 (822)
+..|+.||++|+|||++..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~ 21 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAA 21 (213)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999998763
No 108
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=62.12 E-value=2.8 Score=38.64 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=13.3
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999875
No 109
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.06 E-value=40 Score=36.67 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 565 KLLLELQKENRELRVQMARQQQRLLALE 592 (822)
Q Consensus 565 ~li~eLq~Ei~~Lr~eL~~~q~~i~~le 592 (822)
..|..|++||..|+..|.+-.+.|+.-+
T Consensus 225 V~i~~lkeeia~Lkk~L~qkdq~ileKd 252 (305)
T KOG3990|consen 225 VKIQKLKEEIARLKKLLHQKDQLILEKD 252 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhh
Confidence 5788999999999999988877765433
No 110
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=61.95 E-value=3.2 Score=47.51 Aligned_cols=36 Identities=36% Similarity=0.683 Sum_probs=28.3
Q ss_pred eeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEec
Q 003413 300 VFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYN 355 (822)
Q Consensus 300 IfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYN 355 (822)
|+-||.+||||||++ +.+|+... .-.|+++++|-|.
T Consensus 33 ~~iyG~sgTGKT~~~--------------r~~l~~~n------~~~vw~n~~ecft 68 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLV--------------RQLLRKLN------LENVWLNCVECFT 68 (438)
T ss_pred EEEeccCCCchhHHH--------------HHHHhhcC------CcceeeehHHhcc
Confidence 589999999999986 77777652 2258888888874
No 111
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=61.11 E-value=5.1 Score=38.58 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=17.7
Q ss_pred HHHHcCCCceeeeeccCCCCcceeecc
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTMLG 316 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM~G 316 (822)
..++++. ..++..|++|||||.++..
T Consensus 18 ~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 18 EALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 3444442 4557788999999998743
No 112
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=60.97 E-value=2.9 Score=43.35 Aligned_cols=16 Identities=44% Similarity=0.598 Sum_probs=14.4
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+-.|+||+|||.|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4778999999999997
No 113
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=60.93 E-value=4.4 Score=45.85 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=20.6
Q ss_pred HHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 287 DLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 287 pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.++..++.+. +.|+..|.||||||+++
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 3445555555 77899999999999887
No 114
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=60.85 E-value=3.5 Score=43.75 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=16.6
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
.-.++.++..|..|||||+||
T Consensus 10 ~~~~~~~lV~a~AGSGKT~~l 30 (315)
T PF00580_consen 10 RSTEGPLLVNAGAGSGKTTTL 30 (315)
T ss_dssp HS-SSEEEEEE-TTSSHHHHH
T ss_pred hCCCCCEEEEeCCCCCchHHH
Confidence 337788899999999999998
No 115
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=60.77 E-value=29 Score=42.71 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=26.9
Q ss_pred HHhhhhHHHHHHHHH-cCCCceeeeeccCCCCcceee
Q 003413 279 EVYSRTTADLVEAVL-QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 279 eVF~~~v~pLV~svL-~GyN~tIfAYGQTGSGKTyTM 314 (822)
-||. ++......++ .|.|-||+.-|.+|||||.+.
T Consensus 68 Hifa-vA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 68 HVFA-IADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CHHH-HHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 4665 4444445554 589999999999999999987
No 116
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=60.25 E-value=27 Score=43.00 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=25.7
Q ss_pred HHhhhhHHHHHHHHH-cCCCceeeeeccCCCCcceee
Q 003413 279 EVYSRTTADLVEAVL-QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 279 eVF~~~v~pLV~svL-~GyN~tIfAYGQTGSGKTyTM 314 (822)
.||.. +......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 Hifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 74 HVFAI-ADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 46643 333333333 689999999999999999997
No 117
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=60.00 E-value=3.9 Score=41.19 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=12.5
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
..+..|+.|||||+|+
T Consensus 19 ~~~i~GpPGTGKT~~l 34 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTL 34 (236)
T ss_dssp -EEEE-STTSSHHHHH
T ss_pred CEEEECCCCCChHHHH
Confidence 4667899999999887
No 118
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=59.73 E-value=5.8 Score=43.18 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=16.3
Q ss_pred cCC-CceeeeeccCCCCcceee
Q 003413 294 QGR-NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~Gy-N~tIfAYGQTGSGKTyTM 314 (822)
.|. ...++-||++|+|||+.+
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHH
Confidence 453 346667999999999987
No 119
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=59.64 E-value=29 Score=42.76 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=25.8
Q ss_pred HHhhhhHHHHHHHHH-cCCCceeeeeccCCCCcceee
Q 003413 279 EVYSRTTADLVEAVL-QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 279 eVF~~~v~pLV~svL-~GyN~tIfAYGQTGSGKTyTM 314 (822)
-||. ++......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 Hifa-iA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 68 HIYA-LADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CHHH-HHHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 3664 3333334443 589999999999999999997
No 120
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=59.03 E-value=33 Score=42.64 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=25.5
Q ss_pred HhhhhHHHHHHHHH-cCCCceeeeeccCCCCcceee
Q 003413 280 VYSRTTADLVEAVL-QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 280 VF~~~v~pLV~svL-~GyN~tIfAYGQTGSGKTyTM 314 (822)
||. ++......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 ifa-iA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 74 VFA-IADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred HHH-HHHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 564 3333344443 689999999999999999997
No 121
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=58.92 E-value=4 Score=37.60 Aligned_cols=16 Identities=25% Similarity=0.464 Sum_probs=14.0
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
+|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4789999999999875
No 122
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=58.60 E-value=5.4 Score=44.80 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..++..++.+. ..|+..|.||||||.+|
T Consensus 149 ~~~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 149 IKEFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 344555555443 45788899999999988
No 123
>PRK10884 SH3 domain-containing protein; Provisional
Probab=58.23 E-value=1.2e+02 Score=32.05 Aligned_cols=24 Identities=8% Similarity=0.180 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 564 AKLLLELQKENRELRVQMARQQQR 587 (822)
Q Consensus 564 ~~li~eLq~Ei~~Lr~eL~~~q~~ 587 (822)
...+.++++|+.+|+.+|+..+..
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 356788888888888888776543
No 124
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=58.16 E-value=2.2 Score=41.80 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=13.0
Q ss_pred HcCCCceeeeeccCCCCcceee
Q 003413 293 LQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 293 L~GyN~tIfAYGQTGSGKTyTM 314 (822)
..|...+++.+|..|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 3566678999999999999886
No 125
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=56.95 E-value=5.9 Score=44.76 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
...++..++. ....|+..|.||||||.+|
T Consensus 151 ~~~~l~~~v~-~~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 151 LEAFLHACVV-GRLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHHHH-cCCeEEEECCCCccHHHHH
Confidence 3444555543 2445788899999999988
No 126
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=56.22 E-value=8.7 Score=44.21 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=40.2
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHHHHHc--CC--CceeeeeccCCCCcceee
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQ--GR--NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~--Gy--N~tIfAYGQTGSGKTyTM 314 (822)
...+.||.+.+...--..+.+.++-.++++++. |. ---+.-||+.|+|||+..
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 457888988877666677778888888888874 22 235778999999999863
No 127
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=55.42 E-value=1.2e+02 Score=30.51 Aligned_cols=30 Identities=37% Similarity=0.472 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 566 LLLELQKENRELRVQMARQQQRLLALEAQA 595 (822)
Q Consensus 566 li~eLq~Ei~~Lr~eL~~~q~~i~~le~q~ 595 (822)
.+..|..++.+|+.++..++..+..++++.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL 102 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAEL 102 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677777777777776666666554
No 128
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=55.02 E-value=7.6 Score=39.08 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=17.0
Q ss_pred HHHHcCCCceeeeeccCCCCccee
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyT 313 (822)
+.++.|.| ++..++||+|||.+
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHH
Confidence 44455776 57788999999987
No 129
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=54.43 E-value=8.5 Score=41.64 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=25.7
Q ss_pred CCCCchhHHhhhhHHHHHHHHHc--CCCceeeeeccCCCCcceee
Q 003413 272 PDSTSQHEVYSRTTADLVEAVLQ--GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 272 ~~~asQeeVF~~~v~pLV~svL~--GyN~tIfAYGQTGSGKTyTM 314 (822)
.+-..|+++.+. +..++..... +....++-||+.|+|||+..
T Consensus 4 ~~~iG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 4 AEFIGQEKVKEQ-LQLFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred HHHcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 334556777764 3444443322 22234778999999999876
No 130
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=54.34 E-value=4 Score=41.63 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=12.7
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
-++.+|.||||||.+|
T Consensus 40 h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLL 55 (205)
T ss_dssp SEEEE--TTSSHHHHH
T ss_pred eEEEEcCCCCCccHHH
Confidence 5789999999999988
No 131
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=53.87 E-value=10 Score=43.68 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=16.1
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
...|+.+|+||+|||.|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457889999999999998
No 132
>PRK11637 AmiB activator; Provisional
Probab=53.73 E-value=1.4e+02 Score=34.68 Aligned_cols=20 Identities=20% Similarity=0.126 Sum_probs=11.0
Q ss_pred cccc-CCCCceeecccccccc
Q 003413 740 DITA-ANSPSVTALSGRKTRS 759 (822)
Q Consensus 740 ~~~~-~~~~~~~~~~~~~~~~ 759 (822)
||.+ ..+|-+++.+|+-...
T Consensus 333 ~i~~~~g~~v~A~~~G~V~~~ 353 (428)
T PRK11637 333 VIGASEGTEVKAIADGRVLLA 353 (428)
T ss_pred EeecCCCCeEEecCCeEEEEe
Confidence 5543 2456666666665544
No 133
>PTZ00424 helicase 45; Provisional
Probab=53.66 E-value=6.5 Score=44.05 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=19.0
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.+..+++|.|. +..++||||||.+.
T Consensus 58 ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 58 GIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 44566788885 46789999999764
No 134
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=52.91 E-value=5.5 Score=37.65 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=13.3
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
|+.+|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 135
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=52.83 E-value=10 Score=41.35 Aligned_cols=16 Identities=44% Similarity=0.605 Sum_probs=14.1
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+-.|+||+|||+|+
T Consensus 196 vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 196 VIALVGPTGVGKTTTL 211 (282)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999998
No 136
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=52.69 E-value=4.5 Score=37.47 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=19.8
Q ss_pred eeeeccCCCCcceeecccCCCCchHHHHHHHHHHhh
Q 003413 300 VFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKI 335 (822)
Q Consensus 300 IfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i 335 (822)
|+-||++|.|||+.+ -..+.+|.+.+
T Consensus 1 I~i~G~~G~GKS~l~----------~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA----------KELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHH----------HHHHHHHHHHh
Confidence 578999999999887 44566666655
No 137
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=52.66 E-value=8.2 Score=40.64 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=13.8
Q ss_pred CCceeeeeccCCCCcceee
Q 003413 296 RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 296 yN~tIfAYGQTGSGKTyTM 314 (822)
.+-.+++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 4558999999999999875
No 138
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=52.49 E-value=17 Score=45.48 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=19.8
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..+.+|.|+.|+| +||||||-+-
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHHH
Confidence 45567999998887 9999999763
No 139
>PLN03025 replication factor C subunit; Provisional
Probab=52.12 E-value=9.4 Score=42.10 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=15.9
Q ss_pred CCCceeeeeccCCCCcceeec
Q 003413 295 GRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 295 GyN~tIfAYGQTGSGKTyTM~ 315 (822)
|.-..++-||+.|+|||++..
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 333346779999999999873
No 140
>PHA00729 NTP-binding motif containing protein
Probab=51.63 E-value=11 Score=40.44 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
++-++..+..|-=..|+.+|.+|+||||..
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 445566665543357999999999999876
No 141
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=51.62 E-value=8.2 Score=47.23 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=25.8
Q ss_pred HHhhhhHHHHHHHH-HcCCCceeeeeccCCCCcceee
Q 003413 279 EVYSRTTADLVEAV-LQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 279 eVF~~~v~pLV~sv-L~GyN~tIfAYGQTGSGKTyTM 314 (822)
-||.. +......+ ..|.|-||+..|.+|||||.++
T Consensus 67 Hif~~-a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAV-AQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHH-HHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchh-hhcccccccccccccceeeccccccccccch
Confidence 36653 33333443 3689999999999999999986
No 142
>PRK13342 recombination factor protein RarA; Reviewed
Probab=51.25 E-value=8.1 Score=44.30 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=24.0
Q ss_pred chhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 276 SQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 276 sQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.|+.+... ...+...+-.+.-..++-||++|+|||++.
T Consensus 16 Gq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 16 GQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred CcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 45555542 233333334555557788999999999776
No 143
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=51.18 E-value=16 Score=39.31 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=28.5
Q ss_pred cCCCCchhHHhhhhHHHHHHHHHcC--CCceeeeeccCCCCccee
Q 003413 271 FPDSTSQHEVYSRTTADLVEAVLQG--RNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 271 F~~~asQeeVF~~~v~pLV~svL~G--yN~tIfAYGQTGSGKTyT 313 (822)
|++...|+.+-.. .+.+++.+... .-..++-||+.|.|||..
T Consensus 23 L~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 23 LDEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 5666778999864 67778877642 234688999999999854
No 144
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=51.17 E-value=8.7 Score=44.37 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=18.0
Q ss_pred HHHHHcCCCceeeeeccCCCCccee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyT 313 (822)
+..+++|.| +++.++||||||.+
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 344567887 67888999999965
No 145
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=51.08 E-value=5 Score=38.11 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=13.5
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999876
No 146
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=50.47 E-value=6.4 Score=36.09 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=13.1
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 678899999999875
No 147
>PRK13764 ATPase; Provisional
Probab=49.92 E-value=7.9 Score=46.93 Aligned_cols=19 Identities=37% Similarity=0.534 Sum_probs=16.3
Q ss_pred CCceeeeeccCCCCcceee
Q 003413 296 RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 296 yN~tIfAYGQTGSGKTyTM 314 (822)
....|+..|+||||||+++
T Consensus 256 ~~~~ILIsG~TGSGKTTll 274 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA 274 (602)
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 3455899999999999998
No 148
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=49.89 E-value=9.4 Score=47.34 Aligned_cols=19 Identities=42% Similarity=0.583 Sum_probs=16.0
Q ss_pred CCceeeeeccCCCCcceee
Q 003413 296 RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 296 yN~tIfAYGQTGSGKTyTM 314 (822)
-|-.++.+|+||||||.-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 3567888999999999877
No 149
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=48.91 E-value=2.1e+02 Score=26.29 Aligned_cols=29 Identities=31% Similarity=0.279 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 565 KLLLELQKENRELRVQMARQQQRLLALEA 593 (822)
Q Consensus 565 ~li~eLq~Ei~~Lr~eL~~~q~~i~~le~ 593 (822)
..-..|++||.+|+.+|...+.--.+++.
T Consensus 8 ~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~ 36 (88)
T PF14389_consen 8 ERRSALEQEVAELQKQLQEEQDLRRALEK 36 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567999999999999887765555554
No 150
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=48.05 E-value=8.8 Score=43.55 Aligned_cols=44 Identities=30% Similarity=0.463 Sum_probs=31.2
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..|.|+.|-+. +++= .-|+..+.+-.-+.|+.+|.+|||||+.+
T Consensus 12 ~~~pf~~ivGq----~~~k----~al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 12 PVFPFTAIVGQ----EEMK----LALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCHHHHhCh----HHHH----HHHHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 47889988774 4433 33445555544456889999999999987
No 151
>PRK06547 hypothetical protein; Provisional
Probab=47.93 E-value=14 Score=37.57 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=18.9
Q ss_pred HHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 287 DLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 287 pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.++..+..+.---|..+|.+|||||+.-
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3444444444455667799999999864
No 152
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=47.38 E-value=13 Score=40.75 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=25.5
Q ss_pred HhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 280 VYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 280 VF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
|+...+.||+ ..+.--+..|-.||+|++|||.++
T Consensus 177 l~~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 177 LCAAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 3444566776 455666778889999999999876
No 153
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=47.24 E-value=7.1 Score=39.58 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.8
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46889999999999965
No 154
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=47.20 E-value=11 Score=43.16 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=19.0
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..+++|.| +++.++||||||.+.
T Consensus 32 i~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 32 IPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445667876 788899999999863
No 155
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=46.76 E-value=13 Score=40.07 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=16.6
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
.|....++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 444445788999999999876
No 156
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=46.08 E-value=7.6 Score=39.77 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=14.4
Q ss_pred CCceeeeeccCCCCcceee
Q 003413 296 RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 296 yN~tIfAYGQTGSGKTyTM 314 (822)
.-..||..||.|||||+.+
T Consensus 14 ~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp S-EEEEEES-TTSTTHHHH
T ss_pred CCEEEEEeCCCCCCHHHHH
Confidence 4457899999999998876
No 157
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=45.74 E-value=14 Score=42.81 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=24.6
Q ss_pred hHHhhhhHHHHHHHHHcC----CCceeeeeccCCCCcceee
Q 003413 278 HEVYSRTTADLVEAVLQG----RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 278 eeVF~~~v~pLV~svL~G----yN~tIfAYGQTGSGKTyTM 314 (822)
...|.....-++.++.+- ...-|.-.|+||-|||.|+
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTL 220 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHH
Confidence 344444444444444444 2667778999999999998
No 158
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=45.54 E-value=11 Score=42.91 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=18.2
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..++.|.| |++.++||||||.+.
T Consensus 39 ip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 39 LPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHhCCCc--EEEECCCCchHHHHH
Confidence 345678887 566779999999753
No 159
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=45.10 E-value=18 Score=39.63 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=43.2
Q ss_pred eccccCCCCchhHHhhhhHHHHHHHHHc---CCC--ceeeeeccCCCCcceeec--------------ccC---CCCchH
Q 003413 267 FDASFPDSTSQHEVYSRTTADLVEAVLQ---GRN--GSVFCYGATGAGKTYTML--------------GTI---ENPGVM 324 (822)
Q Consensus 267 FD~VF~~~asQeeVF~~~v~pLV~svL~---GyN--~tIfAYGQTGSGKTyTM~--------------G~~---e~~GII 324 (822)
|..|=+-+..-++|-+.+--||...-|- |.. -.|+.||+.|+|||-..- |+. .--|==
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgeg 233 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEG 233 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccC
Confidence 3334344444455665555555553331 333 258999999999974321 211 012666
Q ss_pred HHHHHHHHHhhhhcC
Q 003413 325 VLAIKDLFTKIRQRS 339 (822)
Q Consensus 325 pRal~~LF~~i~~~~ 339 (822)
||.++++|....+..
T Consensus 234 prmvrdvfrlakena 248 (408)
T KOG0727|consen 234 PRMVRDVFRLAKENA 248 (408)
T ss_pred cHHHHHHHHHHhccC
Confidence 999999998776654
No 160
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=44.90 E-value=90 Score=37.01 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=29.3
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHhhhhh
Q 003413 642 VAPEGFRELQQTVKTLEAEIEKMKKDHA---LQLKQKDDVIRELKRKSDKQL 690 (822)
Q Consensus 642 ~~ee~~~el~~~~k~le~ele~~~~~~~---~ql~~k~~li~el~~~~~~~~ 690 (822)
.....+.+.|.+.++||++++++++++. .+++..++.|++|+......+
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk 117 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALA 117 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 4455677777777888888888776655 344444444555554444333
No 161
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=44.87 E-value=8.3 Score=41.99 Aligned_cols=50 Identities=30% Similarity=0.488 Sum_probs=36.1
Q ss_pred HHHHcCCCce-eeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeec
Q 003413 290 EAVLQGRNGS-VFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDL 361 (822)
Q Consensus 290 ~svL~GyN~t-IfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DL 361 (822)
..+++|+-+- |+.||..|+||+..+ ..+|....... ...+||..+.|.+|
T Consensus 77 ~~F~~G~pANnVLLwGaRGtGKSSLV--------------KA~~~e~~~~g--------lrLVEV~k~dl~~L 127 (287)
T COG2607 77 EQFAEGLPANNVLLWGARGTGKSSLV--------------KALLNEYADEG--------LRLVEVDKEDLATL 127 (287)
T ss_pred HHHHcCCcccceEEecCCCCChHHHH--------------HHHHHHHHhcC--------CeEEEEcHHHHhhH
Confidence 5677898774 899999999997654 66666654433 12688888877766
No 162
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=44.86 E-value=70 Score=34.99 Aligned_cols=123 Identities=18% Similarity=0.240 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHH--HHHHhhhhhcccccccccc-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003413 523 NLSFGETQNTLH--WADRAKEIRTKEGEANEET-LQVPDSGTDQAKLLLELQKENRELRVQMARQQQRLLALEAQALAAN 599 (822)
Q Consensus 523 ~~~~eETLsTLr--FA~Rak~Iknk~~~~ne~~-~~~~~~~~d~~~li~eLq~Ei~~Lr~eL~~~q~~i~~le~q~~a~~ 599 (822)
..++...|.-++ |...+...+......-... ..+..........+..++.|+.+++.++..++..+..++....+-.
T Consensus 164 ~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le 243 (312)
T PF00038_consen 164 SSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLE 243 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhh
Confidence 345677777774 6666655543321000000 0000000111234556677777777777777766666665432221
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCCccccccCCccChhhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003413 600 SPTPSSVSSLLTPPSTAHPNEKRKPRSSFLHGNCFTPELKRKVAPEGFRELQQTVKTLEAEIEKMKKDHALQLKQKDDVI 679 (822)
Q Consensus 600 ~~~~s~~~~~~~~~~~~~~~e~~k~~~~~l~~~~~~~e~k~~~~ee~~~el~~~~k~le~ele~~~~~~~~ql~~k~~li 679 (822)
. .+..-...........+..+..++.++..++.++..++.+..+|+
T Consensus 244 ~----------------------------------~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll 289 (312)
T PF00038_consen 244 R----------------------------------QLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELL 289 (312)
T ss_dssp H----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h----------------------------------hHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 0 000011112335666777788888888888888776666665554
No 163
>PRK10536 hypothetical protein; Provisional
Probab=44.51 E-value=11 Score=41.14 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=27.6
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.|.|..|-+-+..|..... .+.+ +.-|+..|++||||||..
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHH
Confidence 4666666666665654433 2223 348899999999999986
No 164
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=44.14 E-value=13 Score=43.03 Aligned_cols=24 Identities=42% Similarity=0.697 Sum_probs=18.9
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..+++|.| |++..+||||||.+.
T Consensus 32 i~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 32 IPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 445678887 678889999999874
No 165
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=44.09 E-value=12 Score=48.69 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCCceeeeeccCCCCcceeecc
Q 003413 285 TADLVEAVLQGRNGSVFCYGATGAGKTYTMLG 316 (822)
Q Consensus 285 v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G 316 (822)
+..+++.+.+|...++++ .+||||||+||++
T Consensus 422 I~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 422 IQAVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHHhccCCeEEE-eCCCCCHHHHHHH
Confidence 444555656677655544 8999999999865
No 166
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=43.76 E-value=14 Score=43.47 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=20.8
Q ss_pred ccCCCceeeEEEeeCCCCCCHHHHHHHHHHHHH
Q 003413 506 SLGGACNTVMIANISPCNLSFGETQNTLHWADR 538 (822)
Q Consensus 506 SLGGnskT~mIa~ISPs~~~~eETLsTLrFA~R 538 (822)
.+.-..+..+|||++..+.. +..|.+|-|
T Consensus 319 ~f~iP~Nl~IIgTMNt~Drs----~~~lD~Alr 347 (459)
T PRK11331 319 RFYVPENVYIIGLMNTADRS----LAVVDYALR 347 (459)
T ss_pred cccCCCCeEEEEecCccccc----hhhccHHHH
Confidence 34557899999999998864 445666644
No 167
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=43.72 E-value=14 Score=45.29 Aligned_cols=32 Identities=31% Similarity=0.506 Sum_probs=22.3
Q ss_pred hHHHHHHHHHc-----CCCceeeeeccCCCCcceeecc
Q 003413 284 TTADLVEAVLQ-----GRNGSVFCYGATGAGKTYTMLG 316 (822)
Q Consensus 284 ~v~pLV~svL~-----GyN~tIfAYGQTGSGKTyTM~G 316 (822)
++..+++.+.. |.+..|+.. .||||||+||+.
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 46667777766 345555544 899999999943
No 168
>PRK11637 AmiB activator; Provisional
Probab=43.72 E-value=2.1e+02 Score=33.21 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003413 646 GFRELQQTVKTLEAEIEKMKKD 667 (822)
Q Consensus 646 ~~~el~~~~k~le~ele~~~~~ 667 (822)
.+.+++.++..++.+++..++.
T Consensus 104 ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 104 QIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 169
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=43.68 E-value=9.9 Score=40.65 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=14.7
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|+-||++|+|||++.
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45788999999999886
No 170
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=43.42 E-value=13 Score=44.23 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCC--ceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQGRN--GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~GyN--~tIfAYGQTGSGKTyTM 314 (822)
++..++..+.|.. ..++.+|++|+|||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 5555666665553 46788999999999998
No 171
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=43.10 E-value=9.1 Score=43.82 Aligned_cols=18 Identities=44% Similarity=0.565 Sum_probs=15.9
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
...|+-+|+||+|||+|+
T Consensus 137 g~ii~lvGptGvGKTTti 154 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT 154 (374)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457788999999999998
No 172
>PRK04195 replication factor C large subunit; Provisional
Probab=42.58 E-value=12 Score=43.81 Aligned_cols=30 Identities=30% Similarity=0.591 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCC-CceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQGR-NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~Gy-N~tIfAYGQTGSGKTyTM 314 (822)
+..++.....|. .-.++.||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 444555555664 457889999999999876
No 173
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=42.41 E-value=28 Score=43.43 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.2
Q ss_pred CCcchHHHHHHHHHHHHHHHhhhh
Q 003413 41 PHHGLKEKMKALTLLYEQQKRASS 64 (822)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~ 64 (822)
+-|+.-+|+..|+-.|+-||..+.
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~ 425 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSG 425 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcch
Confidence 567888899899999999988884
No 174
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.36 E-value=16 Score=41.19 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=25.5
Q ss_pred EeccccCCCCchhHHhhhhHHHHHHHHHcC-CCceeeeeccCCCCcceee
Q 003413 266 TFDASFPDSTSQHEVYSRTTADLVEAVLQG-RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 266 ~FD~VF~~~asQeeVF~~~v~pLV~svL~G-yN~tIfAYGQTGSGKTyTM 314 (822)
+||.|.+ |+.+-. .+...+-.| ..-+++-||+.|+|||.+.
T Consensus 14 ~~~~iiG----q~~~~~----~l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDIIG----QKHIVT----AISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhccC----hHHHHH----HHHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 4566654 444443 233333344 3456899999999999876
No 175
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=41.92 E-value=15 Score=40.58 Aligned_cols=39 Identities=31% Similarity=0.398 Sum_probs=23.2
Q ss_pred CchhHHhhhhHHHHHHHHHc-C-CCceeeeeccCCCCcceee
Q 003413 275 TSQHEVYSRTTADLVEAVLQ-G-RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 275 asQeeVF~~~v~pLV~svL~-G-yN~tIfAYGQTGSGKTyTM 314 (822)
..|+++-+. +..++..... | ....++-||++|+|||+..
T Consensus 28 vG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la 68 (328)
T PRK00080 28 IGQEKVKEN-LKIFIEAAKKRGEALDHVLLYGPPGLGKTTLA 68 (328)
T ss_pred cCcHHHHHH-HHHHHHHHHhcCCCCCcEEEECCCCccHHHHH
Confidence 344555443 3334443322 2 2236788999999999987
No 176
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=41.82 E-value=55 Score=40.60 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=18.2
Q ss_pred ccccceeec-ccccccccccCccCCCc
Q 003413 698 VKKSGVQTR-ATLRPKEKNTGELKSPS 723 (822)
Q Consensus 698 ~~~~~~~~~-~~~~~~~~~~~~~~~~~ 723 (822)
..++||.-. ..|+.++++..|||.-+
T Consensus 626 ~akrq~ei~~~~~~~~d~ei~~lk~ki 652 (697)
T PF09726_consen 626 DAKRQLEIAQGQLRKKDKEIEELKAKI 652 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666555 77888888888888733
No 177
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=41.39 E-value=10 Score=41.84 Aligned_cols=16 Identities=44% Similarity=0.798 Sum_probs=13.6
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+-||++|+|||.+-
T Consensus 153 nVLFyGppGTGKTm~A 168 (368)
T COG1223 153 NVLFYGPPGTGKTMMA 168 (368)
T ss_pred eeEEECCCCccHHHHH
Confidence 5889999999998653
No 178
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=40.99 E-value=3.6e+02 Score=26.52 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 003413 654 VKTLEAEIEKMKKDHALQLKQKDDVIRELKRKS 686 (822)
Q Consensus 654 ~k~le~ele~~~~~~~~ql~~k~~li~el~~~~ 686 (822)
+..+...+...+..+.-.++.++.-|+.|..+.
T Consensus 117 ~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 117 LQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333344444455666777777776655
No 179
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=40.95 E-value=13 Score=40.50 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=18.7
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+++..+.. +--|+-+|++|+|||-++
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 34444433 557799999999999876
No 180
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=40.76 E-value=9.5 Score=36.00 Aligned_cols=15 Identities=40% Similarity=0.793 Sum_probs=13.1
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
++-||.+|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 567999999999876
No 181
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=40.56 E-value=18 Score=39.88 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+.+++..++.+. ..|+-.|.||||||..|
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 456666666544 46777899999999976
No 182
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=40.30 E-value=15 Score=40.73 Aligned_cols=24 Identities=42% Similarity=0.623 Sum_probs=21.5
Q ss_pred HHHcCCCceeeeeccCCCCcceee
Q 003413 291 AVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 291 svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
++-+||.--|+|.|.||.|||..|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHH
Confidence 556899999999999999999876
No 183
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=40.27 E-value=10 Score=44.55 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=28.1
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHH-HHHc--C--CCceeeeeccCCCCcceee
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVE-AVLQ--G--RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~-svL~--G--yN~tIfAYGQTGSGKTyTM 314 (822)
..+||.|.+.+...+++.+ ++..+.. ..+. | ..-.|+.||++|+|||+..
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 5677887765443333332 2222111 0111 2 2235889999999999886
No 184
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=40.25 E-value=3.7e+02 Score=27.15 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=27.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 003413 643 APEGFRELQQTVKTLEAEIEKMKKDHALQLKQKDDVIRELKRKSD 687 (822)
Q Consensus 643 ~ee~~~el~~~~k~le~ele~~~~~~~~ql~~k~~li~el~~~~~ 687 (822)
.++.+.-+..++++|+..++++.+.+....+....+..++.+..+
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777778888777777777766333444444444444443
No 185
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=40.23 E-value=1.4e+02 Score=36.83 Aligned_cols=112 Identities=21% Similarity=0.232 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccccCCccccccCCccChhhhhccC
Q 003413 564 AKLLLELQKENRELRVQMARQQQRLLALEAQALAANSPTPSSVSSLLTPPSTAHPNEKRKPRSSFLHGNCFTPELKRKVA 643 (822)
Q Consensus 564 ~~li~eLq~Ei~~Lr~eL~~~q~~i~~le~q~~a~~~~~~s~~~~~~~~~~~~~~~e~~k~~~~~l~~~~~~~e~k~~~~ 643 (822)
...+.++.++|+.|...|+..++.++..+.+.+.-.+...... .+. ...+.+.......+...
T Consensus 345 q~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~------------~e~-----~~~k~~~s~~ssl~~e~ 407 (961)
T KOG4673|consen 345 QLELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSV------------TED-----LKRKSNESEVSSLREEY 407 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HHH-----HHHHhhcccccchHHHH
Confidence 4567778888888888887766666655554432221111000 000 00111111222223333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-------HHH-----HHHhHHHHHHHHHHHhhhhhcc
Q 003413 644 PEGFRELQQTVKTLEAEIEKMKKD-------HAL-----QLKQKDDVIRELKRKSDKQLER 692 (822)
Q Consensus 644 ee~~~el~~~~k~le~ele~~~~~-------~~~-----ql~~k~~li~el~~~~~~~~~~ 692 (822)
.+.+.++..++.++-.|.+.+|++ +.. .|.+|+++|..|.....+.+-.
T Consensus 408 ~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ 468 (961)
T KOG4673|consen 408 HQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKK 468 (961)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445666666666555555554443 322 4667888888877666655543
No 186
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=40.18 E-value=16 Score=41.28 Aligned_cols=29 Identities=34% Similarity=0.525 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
...++..++.+. +.|+..|.||||||.+|
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 445566666643 68899999999998876
No 187
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=39.92 E-value=15 Score=37.46 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=18.9
Q ss_pred HHHHcCC---CceeeeeccCCCCcceee
Q 003413 290 EAVLQGR---NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 290 ~svL~Gy---N~tIfAYGQTGSGKTyTM 314 (822)
|.++.|- ...+.-||.+|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4455553 567889999999998764
No 188
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=39.56 E-value=1.5e+02 Score=32.96 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=29.3
Q ss_pred ccChhhhhccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 633 CFTPELKRKVAPEGFRELQQTVKTLEAEIEKMKKDHA 669 (822)
Q Consensus 633 ~~~~e~k~~~~ee~~~el~~~~k~le~ele~~~~~~~ 669 (822)
++..|.+|-++.-.++|.+.+|+.|.+-++.||..+.
T Consensus 105 WIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 105 WIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3455667777777899999999999999999987654
No 189
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=39.31 E-value=17 Score=45.10 Aligned_cols=21 Identities=43% Similarity=0.673 Sum_probs=17.2
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
.|.-..++-||++|+|||++.
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLA 69 (725)
T ss_pred cCCCceEEEECCCCCCHHHHH
Confidence 455557888999999999886
No 190
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.23 E-value=4e+02 Score=27.75 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003413 566 LLLELQKENRELRVQMARQQQRL 588 (822)
Q Consensus 566 li~eLq~Ei~~Lr~eL~~~q~~i 588 (822)
.+.+|++++.+++.+++.++.++
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i 92 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKI 92 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444
No 191
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=39.19 E-value=30 Score=42.61 Aligned_cols=51 Identities=24% Similarity=0.367 Sum_probs=33.7
Q ss_pred CCCCccCchhhhhhhhccCCCcee---------eEEEeeCCCCCCHHHHHHHHHHHHHhhhhhccc
Q 003413 490 KHIPYRNSKLTQLLKDSLGGACNT---------VMIANISPCNLSFGETQNTLHWADRAKEIRTKE 546 (822)
Q Consensus 490 ~hIPYRdSKLTrLLqDSLGGnskT---------~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk~ 546 (822)
.+-||-..-|-.++...|.|-... -=||.||. .+-..|.++.||..|..+.
T Consensus 572 ~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSG------DaRraldic~RA~Eia~~~ 631 (767)
T KOG1514|consen 572 CFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSG------DARRALDICRRAAEIAEER 631 (767)
T ss_pred ecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccc------cHHHHHHHHHHHHHHhhhh
Confidence 477898889999998888875100 01334443 4566788888888886543
No 192
>PRK04328 hypothetical protein; Provisional
Probab=39.18 E-value=20 Score=38.28 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=21.8
Q ss_pred HHHHHHHcC---CCceeeeeccCCCCccee
Q 003413 287 DLVEAVLQG---RNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 287 pLV~svL~G---yN~tIfAYGQTGSGKTyT 313 (822)
+-+|.++.| ...+++.+|.+|||||..
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 456888876 578899999999999753
No 193
>PF05729 NACHT: NACHT domain
Probab=39.10 E-value=12 Score=35.81 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=14.1
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.++.+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4678999999999887
No 194
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=38.95 E-value=23 Score=38.14 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.+.++..+..|.+ |+-+|++|+|||...
T Consensus 11 ~~~~l~~l~~g~~--vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 11 TSRALRYLKSGYP--VHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 3444455555654 456899999998764
No 195
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=38.88 E-value=23 Score=39.61 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=14.8
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|...|++|+|||.|+
T Consensus 115 ~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 115 FVILVVGVNGVGKTTTI 131 (318)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46777899999999997
No 196
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=38.12 E-value=27 Score=43.12 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=26.4
Q ss_pred HHhhhhHHHHHHHHH-cCCCceeeeeccCCCCcceee
Q 003413 279 EVYSRTTADLVEAVL-QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 279 eVF~~~v~pLV~svL-~GyN~tIfAYGQTGSGKTyTM 314 (822)
-||. ++......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 Hifa-iA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 74 HVYA-IADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CHHH-HHHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 4664 3444444444 589999999999999999986
No 197
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=38.09 E-value=18 Score=40.23 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=18.8
Q ss_pred HcCCCceeeeeccCCCCcceee
Q 003413 293 LQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 293 L~GyN~tIfAYGQTGSGKTyTM 314 (822)
-..-+..++.||+.|||||.+|
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L 40 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLL 40 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHH
Confidence 3456678999999999999998
No 198
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=37.62 E-value=20 Score=42.78 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=28.2
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.-+|+.+++.+. . +..+...++.+....|+-||++|+|||+.-
T Consensus 61 p~~f~~iiGqs~----~----i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 61 PKSFDEIIGQEE----G----IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred cCCHHHeeCcHH----H----HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 356777776532 2 233333445666677889999999998753
No 199
>PHA02244 ATPase-like protein
Probab=37.38 E-value=28 Score=40.09 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=17.5
Q ss_pred HHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 287 DLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 287 pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.+...+-.|.+ |+-+|++|+|||+..
T Consensus 111 ri~r~l~~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 111 DIAKIVNANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 34333334554 566999999999875
No 200
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=37.27 E-value=28 Score=42.93 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=25.6
Q ss_pred HHhhhhHHHHHHHHH-cCCCceeeeeccCCCCcceee
Q 003413 279 EVYSRTTADLVEAVL-QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 279 eVF~~~v~pLV~svL-~GyN~tIfAYGQTGSGKTyTM 314 (822)
-||. ++......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 Hifa-vA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 68 HIFA-ISDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CHHH-HHHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 3664 3333344433 589999999999999999986
No 201
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=37.13 E-value=27 Score=43.08 Aligned_cols=34 Identities=32% Similarity=0.577 Sum_probs=24.8
Q ss_pred HhhhhHHHHHHHHH-cCCCceeeeeccCCCCcceee
Q 003413 280 VYSRTTADLVEAVL-QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 280 VF~~~v~pLV~svL-~GyN~tIfAYGQTGSGKTyTM 314 (822)
||. ++......++ .|.|-||+.-|.+|||||.|.
T Consensus 71 ifa-iA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 71 VFA-IADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred HHH-HHHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 554 2333333333 589999999999999999986
No 202
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=36.93 E-value=15 Score=41.65 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=14.1
Q ss_pred CceeeeeccCCCCccee
Q 003413 297 NGSVFCYGATGAGKTYT 313 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyT 313 (822)
.+-|+..|+||||||+.
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 45688999999999863
No 203
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=36.88 E-value=21 Score=36.93 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=19.9
Q ss_pred HHHHHcC---CCceeeeeccCCCCccee
Q 003413 289 VEAVLQG---RNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 289 V~svL~G---yN~tIfAYGQTGSGKTyT 313 (822)
+|.++.| .+++++.+|++|||||..
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 5677754 477899999999999754
No 204
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=36.79 E-value=18 Score=41.84 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=27.7
Q ss_pred CchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCccee
Q 003413 275 TSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 275 asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyT 313 (822)
..|+.+... ..+|-.-+-.|.-.+.+-||+.|+|||..
T Consensus 27 vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 27 VGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred cChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 446777754 45554445567888899999999999974
No 205
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=36.79 E-value=15 Score=43.42 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=17.9
Q ss_pred HcCCCceeeeeccCCCCcceeeccc
Q 003413 293 LQGRNGSVFCYGATGAGKTYTMLGT 317 (822)
Q Consensus 293 L~GyN~tIfAYGQTGSGKTyTM~G~ 317 (822)
.+|.. ++|++|||||||+...++
T Consensus 109 ~~Grd--l~acAqTGsGKT~aFLiP 131 (482)
T KOG0335|consen 109 SGGRD--LMACAQTGSGKTAAFLIP 131 (482)
T ss_pred ecCCc--eEEEccCCCcchHHHHHH
Confidence 34544 489999999999988763
No 206
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=36.78 E-value=33 Score=39.30 Aligned_cols=42 Identities=29% Similarity=0.458 Sum_probs=25.8
Q ss_pred ec-cccCCCCchhHHhhhhHHHHHHHHHcC---CCceeeeeccCCCCccee
Q 003413 267 FD-ASFPDSTSQHEVYSRTTADLVEAVLQG---RNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 267 FD-~VF~~~asQeeVF~~~v~pLV~svL~G---yN~tIfAYGQTGSGKTyT 313 (822)
|| .||+. ++..+..+. .+.....| .+-.+.-.|++|||||..
T Consensus 49 F~~~~~G~----~~~i~~lv~-~l~~~a~g~~~~r~il~L~GPPGsGKStl 94 (361)
T smart00763 49 FDHDFFGM----EEAIERFVN-YFKSAAQGLEERKQILYLLGPVGGGKSSL 94 (361)
T ss_pred cchhccCc----HHHHHHHHH-HHHHHHhcCCCCCcEEEEECCCCCCHHHH
Confidence 45 67764 444444443 33444444 345678999999999853
No 207
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=36.70 E-value=18 Score=44.01 Aligned_cols=24 Identities=38% Similarity=0.664 Sum_probs=18.7
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..++.|.+ |++.+|||||||.+.
T Consensus 37 i~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 37 IPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 455567876 788889999999874
No 208
>PRK05580 primosome assembly protein PriA; Validated
Probab=36.68 E-value=18 Score=44.40 Aligned_cols=39 Identities=26% Similarity=0.201 Sum_probs=24.7
Q ss_pred ccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeec
Q 003413 270 SFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 270 VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
-+.....|+++++.+.. .. ....++.+|+||||||.+.+
T Consensus 142 ~~~Lt~~Q~~ai~~i~~----~~---~~~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRA----AA---GFSPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CCCCCHHHHHHHHHHHh----cc---CCCcEEEECCCCChHHHHHH
Confidence 34445567766654322 11 23458899999999997663
No 209
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=36.63 E-value=20 Score=37.06 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=22.4
Q ss_pred HHHHHHHHcC---CCceeeeeccCCCCcceee
Q 003413 286 ADLVEAVLQG---RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 286 ~pLV~svL~G---yN~tIfAYGQTGSGKTyTM 314 (822)
-+-+|.++.| ....+.-||++|||||..+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 3456788875 3557889999999999765
No 210
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=36.55 E-value=27 Score=43.17 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=25.5
Q ss_pred HHhhhhHHHHHHHHH-cCCCceeeeeccCCCCcceee
Q 003413 279 EVYSRTTADLVEAVL-QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 279 eVF~~~v~pLV~svL-~GyN~tIfAYGQTGSGKTyTM 314 (822)
.||. ++......++ .|.|-||+.-|.+|||||.|.
T Consensus 76 Hiy~-iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 76 HIFA-IADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CHHH-HHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 3664 3333334433 589999999999999999986
No 211
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=36.44 E-value=26 Score=43.24 Aligned_cols=35 Identities=26% Similarity=0.481 Sum_probs=26.2
Q ss_pred HHhhhhHHHHHHHHH-cCCCceeeeeccCCCCcceee
Q 003413 279 EVYSRTTADLVEAVL-QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 279 eVF~~~v~pLV~svL-~GyN~tIfAYGQTGSGKTyTM 314 (822)
-||. ++......++ .|.|-||+.-|.+|||||.+.
T Consensus 73 Hiya-iA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 73 HIFA-IADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CHHH-HHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 4665 3444444444 599999999999999999986
No 212
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=36.44 E-value=18 Score=43.54 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=18.9
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
|..+++|.| |++.++||||||.+.
T Consensus 40 ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 40 LPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 455778988 566889999999764
No 213
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=36.41 E-value=13 Score=36.75 Aligned_cols=17 Identities=35% Similarity=0.702 Sum_probs=14.6
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
+..+-||.+|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45678999999999877
No 214
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=36.38 E-value=12 Score=42.13 Aligned_cols=66 Identities=21% Similarity=0.292 Sum_probs=36.5
Q ss_pred eeeeccCCCCcceeecc---c------C-------CCCchHHHHHHHHHHh-hhh----cCCCCcE----------EEEE
Q 003413 300 VFCYGATGAGKTYTMLG---T------I-------ENPGVMVLAIKDLFTK-IRQ----RSCDGNH----------VVHL 348 (822)
Q Consensus 300 IfAYGQTGSGKTyTM~G---~------~-------e~~GIIpRal~~LF~~-i~~----~~~~~~~----------~V~v 348 (822)
...||+|||||++.+-. . + .+.|+||-.=....+. +.+ ...++.+ .|.+
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~Fv~m 169 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPKFVEM 169 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeccccccccccceee
Confidence 46799999999997642 1 1 2357777644433331 111 0111111 2666
Q ss_pred EEEEEecceeeecCCCC
Q 003413 349 SYLEVYNETVRDLLSPG 365 (822)
Q Consensus 349 S~lEIYNE~V~DLL~p~ 365 (822)
||=|.-.+.=+|.-+|.
T Consensus 170 sy~e~t~~~NldI~~p~ 186 (369)
T PF02456_consen 170 SYDEATSPENLDITNPN 186 (369)
T ss_pred cHhhhCCccccCCCCch
Confidence 66666666667765554
No 215
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=36.16 E-value=31 Score=40.38 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.7
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
-..|+-+|.+|+|||+|.
T Consensus 95 p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 457888999999999997
No 216
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=36.14 E-value=13 Score=39.47 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=15.7
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
...++-||..|+|||++.
T Consensus 12 ~~~~liyG~~G~GKtt~a 29 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTI 29 (220)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456999999999999976
No 217
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=36.10 E-value=28 Score=42.96 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=26.1
Q ss_pred HHhhhhHHHHHHHHH-cCCCceeeeeccCCCCcceee
Q 003413 279 EVYSRTTADLVEAVL-QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 279 eVF~~~v~pLV~svL-~GyN~tIfAYGQTGSGKTyTM 314 (822)
-||. ++......++ .|.|-||+.-|.+|||||.|.
T Consensus 69 Hifa-vA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 69 HLFA-IANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CHHH-HHHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 3664 3444444444 689999999999999999986
No 218
>PRK14974 cell division protein FtsY; Provisional
Probab=36.01 E-value=32 Score=38.87 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=16.0
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
...|...|.+|+|||.|+
T Consensus 140 ~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 457889999999999997
No 219
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=35.98 E-value=42 Score=36.39 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=7.6
Q ss_pred CCceeeccc-cccccc
Q 003413 746 SPSVTALSG-RKTRSH 760 (822)
Q Consensus 746 ~~~~~~~~~-~~~~~~ 760 (822)
+..|..++| +|.=-|
T Consensus 189 g~gvvpl~g~~C~GC~ 204 (239)
T COG1579 189 GVGVVPLEGRVCGGCH 204 (239)
T ss_pred CceEEeecCCcccCCe
Confidence 345555554 455555
No 220
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=35.90 E-value=15 Score=42.28 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=14.7
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
+--++.+|.||||||..|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 345789999999999765
No 221
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=35.59 E-value=32 Score=33.79 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=19.0
Q ss_pred eeeeeccCCCCcceeecccCCCCchHHHHHHHHHHh
Q 003413 299 SVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTK 334 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~ 334 (822)
.+--.|.||+||||+- ..+.+.||..
T Consensus 55 VlSfHG~tGtGKn~v~----------~liA~~ly~~ 80 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFVS----------RLIAEHLYKS 80 (127)
T ss_pred EEEeecCCCCcHHHHH----------HHHHHHHHhc
Confidence 3446799999999974 4466677764
No 222
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=35.55 E-value=12 Score=41.15 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.2
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
.|++-+||..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 378889999999999998754
No 223
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=35.48 E-value=25 Score=36.79 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCC---CceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQGR---NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~Gy---N~tIfAYGQTGSGKTyTM 314 (822)
+-+-+|.++.|- ..+++.+|.+|||||+-.
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 345567777643 677889999999998764
No 224
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=35.41 E-value=19 Score=40.65 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=14.0
Q ss_pred eeeeccCCCCcceeec
Q 003413 300 VFCYGATGAGKTYTML 315 (822)
Q Consensus 300 IfAYGQTGSGKTyTM~ 315 (822)
++.+|.||||||+++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5789999999999874
No 225
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=35.30 E-value=26 Score=42.71 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=30.2
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.-+||.+++. ..... .++..+..++...|+-||++|+|||+..
T Consensus 150 p~~~~~iiGq----s~~~~----~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 150 PRAFSEIVGQ----ERAIK----ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cCcHHhceeC----cHHHH----HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 4567777753 33333 3455556688888999999999999875
No 226
>PF13173 AAA_14: AAA domain
Probab=35.24 E-value=15 Score=34.91 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=14.8
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
-.++-+|+.|+|||+.|
T Consensus 3 ~~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLL 19 (128)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35788999999999987
No 227
>PRK00131 aroK shikimate kinase; Reviewed
Probab=35.04 E-value=17 Score=35.35 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=14.5
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
-+|+.+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999998764
No 228
>PRK10865 protein disaggregation chaperone; Provisional
Probab=34.79 E-value=20 Score=45.29 Aligned_cols=17 Identities=47% Similarity=0.659 Sum_probs=15.0
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
++++-+|++|+|||++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC 615 (857)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57888899999999975
No 229
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=34.65 E-value=35 Score=42.75 Aligned_cols=37 Identities=32% Similarity=0.521 Sum_probs=28.5
Q ss_pred HHhhh-hHHHHHHHHHcCCCceeeeeccCCCCcceeecc
Q 003413 279 EVYSR-TTADLVEAVLQGRNGSVFCYGATGAGKTYTMLG 316 (822)
Q Consensus 279 eVF~~-~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G 316 (822)
.-|+. ++.-+++.+-+|.+-.+++. .||||||+|-+-
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAia 204 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIA 204 (875)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHH
Confidence 34443 47778899999999966665 799999999753
No 230
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=34.63 E-value=1e+02 Score=34.72 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcc
Q 003413 650 LQQTVKTLEAEIEKMKKDHALQLKQKDDVIRELKRKSDKQLER 692 (822)
Q Consensus 650 l~~~~k~le~ele~~~~~~~~ql~~k~~li~el~~~~~~~~~~ 692 (822)
|+.++.+|+++|..+.++++ ..+.+++...|.....+.....
T Consensus 180 Lqkk~~~l~~~l~~~~~eL~-~~~k~L~faqekn~LlqslLdd 221 (323)
T PF08537_consen 180 LQKKIDELEERLNDLEKELE-ITKKDLKFAQEKNALLQSLLDD 221 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555555555444444 3444444444444444444433
No 231
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=34.51 E-value=2.7e+02 Score=34.87 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 565 KLLLELQKENRELRVQMARQQQRLLALEAQ 594 (822)
Q Consensus 565 ~li~eLq~Ei~~Lr~eL~~~q~~i~~le~q 594 (822)
..+.+|+.|+++||.+|....+.-..++.+
T Consensus 418 ~a~~rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 457789999999999997766544444444
No 232
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=34.18 E-value=23 Score=40.03 Aligned_cols=42 Identities=31% Similarity=0.516 Sum_probs=29.9
Q ss_pred eEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 265 FTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 265 F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
|.|..|.+ |+++ ..-++-.+++..-+-|+-.|.+|+|||..+
T Consensus 1 ~pf~~ivg----q~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~ 42 (337)
T TIGR02030 1 FPFTAIVG----QDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAV 42 (337)
T ss_pred CCcccccc----HHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHH
Confidence 44555554 4443 445667777877778999999999999876
No 233
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.15 E-value=25 Score=40.96 Aligned_cols=25 Identities=40% Similarity=0.672 Sum_probs=18.7
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.|..++.|.+ +++..+||||||.+.
T Consensus 19 ai~~~l~g~d--vlv~apTGsGKTl~y 43 (470)
T TIGR00614 19 VINAVLLGRD--CFVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHhHHH
Confidence 3456778886 466679999999764
No 234
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=34.02 E-value=3e+02 Score=28.65 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003413 565 KLLLELQKENRELRVQMARQQQRLLALEAQALAA 598 (822)
Q Consensus 565 ~li~eLq~Ei~~Lr~eL~~~q~~i~~le~q~~a~ 598 (822)
.....++..+..|..+++..+.++..++......
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888887777665433
No 235
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=33.64 E-value=32 Score=42.56 Aligned_cols=34 Identities=24% Similarity=0.492 Sum_probs=25.3
Q ss_pred HhhhhHHHHHHHHH-cCCCceeeeeccCCCCcceee
Q 003413 280 VYSRTTADLVEAVL-QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 280 VF~~~v~pLV~svL-~GyN~tIfAYGQTGSGKTyTM 314 (822)
||. ++......++ .|.|-||+.-|.+|||||.+.
T Consensus 69 ifa-iA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 69 IFA-IAEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred HHH-HHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 564 3333334443 699999999999999999986
No 236
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=33.52 E-value=35 Score=39.10 Aligned_cols=27 Identities=33% Similarity=0.596 Sum_probs=20.2
Q ss_pred HHHHHHHcCCCc---eeeeeccCCCCcceee
Q 003413 287 DLVEAVLQGRNG---SVFCYGATGAGKTYTM 314 (822)
Q Consensus 287 pLV~svL~GyN~---tIfAYGQTGSGKTyTM 314 (822)
|.+...|.|.-- |||+ |+||||||.-|
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEe
Confidence 566777777643 5554 99999999877
No 237
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.32 E-value=39 Score=43.55 Aligned_cols=17 Identities=41% Similarity=0.524 Sum_probs=13.5
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
+.++-+|+||||||..|
T Consensus 27 gl~~I~G~nGaGKSTil 43 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLL 43 (1042)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56678999999997544
No 238
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=33.03 E-value=16 Score=42.49 Aligned_cols=17 Identities=53% Similarity=0.704 Sum_probs=14.7
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|+..|+||+|||+|+
T Consensus 222 ~~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 222 GVVALVGPTGVGKTTTL 238 (424)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36777799999999998
No 239
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=32.88 E-value=18 Score=35.88 Aligned_cols=14 Identities=43% Similarity=0.764 Sum_probs=12.5
Q ss_pred eeeeccCCCCccee
Q 003413 300 VFCYGATGAGKTYT 313 (822)
Q Consensus 300 IfAYGQTGSGKTyT 313 (822)
|+.+|..|||||+.
T Consensus 2 i~i~G~pGsGKst~ 15 (183)
T TIGR01359 2 VFVLGGPGSGKGTQ 15 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999875
No 240
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=32.88 E-value=31 Score=42.37 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=27.1
Q ss_pred cCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 271 FPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 271 F~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
|.+...|+.++..+. .+.-.++..-++..|+||||||.+.
T Consensus 260 f~lt~~Q~~ai~~I~----~d~~~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 260 FELTGAQKRVVAEIL----ADLASPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred CCCCHHHHHHHHHHH----HhhhccCCceEEEECCCCCcHHHHH
Confidence 345566766665433 3333455567899999999999865
No 241
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=32.85 E-value=31 Score=35.67 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCC---CceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQGR---NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~Gy---N~tIfAYGQTGSGKTyTM 314 (822)
+-+-+|.++.|- ...+..||.+|||||...
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 345578888643 456789999999998775
No 242
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=32.77 E-value=17 Score=44.87 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=28.7
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHH-HHHcCC----CceeeeeccCCCCcceee
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVE-AVLQGR----NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~-svL~Gy----N~tIfAYGQTGSGKTyTM 314 (822)
..++||.|-+-+..-+.+.+.+..|+-. .++..+ .-.|+-||++|+|||+.+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 3577777765433333333332222211 122222 246899999999999765
No 243
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=32.75 E-value=30 Score=40.03 Aligned_cols=17 Identities=41% Similarity=0.667 Sum_probs=15.3
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
.-++.+|+||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 56899999999999987
No 244
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=32.70 E-value=26 Score=36.10 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=22.5
Q ss_pred HHHHHHHHHcC-C--CceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQG-R--NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~G-y--N~tIfAYGQTGSGKTyTM 314 (822)
+-+-+|.++.| + ...+.-+|++|+|||..+
T Consensus 4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~ 36 (226)
T cd01393 4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLC 36 (226)
T ss_pred CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHH
Confidence 34567888864 3 446788999999999876
No 245
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=32.68 E-value=18 Score=34.74 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=12.6
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
|+..|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678899999998764
No 246
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=32.49 E-value=25 Score=43.03 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=18.4
Q ss_pred HHHHHcCCCceeeeeccCCCCcceeec
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
|..++... ..++..|++|||||+|+.
T Consensus 166 v~~~l~~~-~~~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 166 VSFALSSK-DLFLIHGPPGTGKTRTLV 191 (637)
T ss_pred HHHHhcCC-CeEEEEcCCCCCHHHHHH
Confidence 34444432 346799999999999984
No 247
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=32.45 E-value=16 Score=31.60 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=12.6
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998766
No 248
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=32.41 E-value=4.9e+02 Score=25.45 Aligned_cols=31 Identities=35% Similarity=0.429 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 565 KLLLELQKENRELRVQMARQQQRLLALEAQA 595 (822)
Q Consensus 565 ~li~eLq~Ei~~Lr~eL~~~q~~i~~le~q~ 595 (822)
.++.+|+..++.+.-++...+..+..++.+.
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r 46 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAER 46 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666555555443
No 249
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=32.37 E-value=17 Score=39.61 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=18.8
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488999999999999998765
No 250
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=32.23 E-value=23 Score=41.16 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=18.6
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.+..+++|.|+. ...+||||||.+.
T Consensus 117 ai~~~~~G~dvi--~~apTGSGKTlay 141 (475)
T PRK01297 117 VLGYTLAGHDAI--GRAQTGTGKTAAF 141 (475)
T ss_pred HHHHHhCCCCEE--EECCCCChHHHHH
Confidence 345677898864 4569999999764
No 251
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.08 E-value=2.5e+02 Score=35.34 Aligned_cols=11 Identities=45% Similarity=0.431 Sum_probs=7.8
Q ss_pred eeccccccccc
Q 003413 750 TALSGRKTRSH 760 (822)
Q Consensus 750 ~~~~~~~~~~~ 760 (822)
++||-=-.|||
T Consensus 697 rAly~FeaRs~ 707 (1118)
T KOG1029|consen 697 RALYPFEARSH 707 (1118)
T ss_pred eeecccccCCc
Confidence 46666777887
No 252
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=31.94 E-value=6.3e+02 Score=27.34 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 003413 647 FRELQQTVKTLEAEIEKMKKDHALQLKQKDDVIRELKRK 685 (822)
Q Consensus 647 ~~el~~~~k~le~ele~~~~~~~~ql~~k~~li~el~~~ 685 (822)
+..|...++..+.+.++.+......+++...+.+++...
T Consensus 62 In~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 62 INTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544443334444444444333
No 253
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=31.79 E-value=20 Score=34.31 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=13.5
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
+|+.+|..|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4789999999998753
No 254
>PHA02653 RNA helicase NPH-II; Provisional
Probab=31.73 E-value=32 Score=42.40 Aligned_cols=33 Identities=33% Similarity=0.434 Sum_probs=22.3
Q ss_pred CchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCccee
Q 003413 275 TSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 275 asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyT 313 (822)
+-|.++-+. ++..++.|.+ |+..|+||||||..
T Consensus 163 ~~~~~iQ~q----il~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 163 SLQPDVQLK----IFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred chhHHHHHH----HHHHHHhCCC--EEEECCCCCCchhH
Confidence 345555443 4455566654 58999999999975
No 255
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=31.73 E-value=5e+02 Score=25.37 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 563 QAKLLLELQKENRELRVQMARQQQRLLALEAQA 595 (822)
Q Consensus 563 ~~~li~eLq~Ei~~Lr~eL~~~q~~i~~le~q~ 595 (822)
....|+.++-|+..|+.+++.+......+..+.
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Ei 53 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEI 53 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888887776655555443
No 256
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=31.66 E-value=29 Score=35.67 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=21.0
Q ss_pred HHHHHHHc-CCC--ceeeeeccCCCCcceee
Q 003413 287 DLVEAVLQ-GRN--GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 287 pLV~svL~-GyN--~tIfAYGQTGSGKTyTM 314 (822)
+-+|.++. |+. ..+..+|.+|||||...
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 44677886 543 35789999999999875
No 257
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=31.55 E-value=32 Score=40.79 Aligned_cols=24 Identities=38% Similarity=0.653 Sum_probs=18.1
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..++.|.| +++..+||||||.+.
T Consensus 152 ip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 152 IPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHhcCCC--EEEEecCCCCccHHH
Confidence 445678876 577789999999653
No 258
>PHA02624 large T antigen; Provisional
Probab=31.53 E-value=36 Score=41.61 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=21.8
Q ss_pred HHHHHHcCCCc--eeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNG--SVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~--tIfAYGQTGSGKTyTM 314 (822)
+++.++.|.-. ||+-||+.|||||+-.
T Consensus 420 ~lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 420 ILKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 46667777766 9999999999998754
No 259
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=31.52 E-value=37 Score=35.60 Aligned_cols=36 Identities=25% Similarity=0.171 Sum_probs=21.3
Q ss_pred HHhhhhHHHHHHHHHc-CCCceeeeeccCCCCcceee
Q 003413 279 EVYSRTTADLVEAVLQ-GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 279 eVF~~~v~pLV~svL~-GyN~tIfAYGQTGSGKTyTM 314 (822)
.+|..++.-+...+-. +..-.|.-.|.+|||||+.+
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 3444444433332222 44446667799999999876
No 260
>PRK07261 topology modulation protein; Provisional
Probab=31.03 E-value=20 Score=35.99 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=12.7
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
|+..|.+|||||+..
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678899999998754
No 261
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=30.92 E-value=37 Score=34.36 Aligned_cols=94 Identities=14% Similarity=0.291 Sum_probs=48.4
Q ss_pred HcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceee-ecCCCC------
Q 003413 293 LQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVR-DLLSPG------ 365 (822)
Q Consensus 293 L~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~-DLL~p~------ 365 (822)
+..++..|+-+|.+||||+.. ++.|++..... +.. .|.|.|-.+..+.+- .|+...
T Consensus 18 ~a~~~~pVlI~GE~GtGK~~l--------------A~~IH~~s~r~--~~p-fi~vnc~~~~~~~~e~~LFG~~~~~~~~ 80 (168)
T PF00158_consen 18 AASSDLPVLITGETGTGKELL--------------ARAIHNNSPRK--NGP-FISVNCAALPEELLESELFGHEKGAFTG 80 (168)
T ss_dssp HTTSTS-EEEECSTTSSHHHH--------------HHHHHHCSTTT--TS--EEEEETTTS-HHHHHHHHHEBCSSSSTT
T ss_pred HhCCCCCEEEEcCCCCcHHHH--------------HHHHHHhhhcc--cCC-eEEEehhhhhcchhhhhhhccccccccc
Confidence 357889999999999999653 34444432211 122 344444444333221 122110
Q ss_pred C----CceEeeCCCC-eEecCcEEEEcCCHHHHHHHHHhhhcc
Q 003413 366 R----PLVLREDKQG-ILAAGLTQYRAYSTDEVMALLQRGNQN 403 (822)
Q Consensus 366 ~----~L~ired~~G-v~V~gLtev~V~S~eE~~~lL~~G~~n 403 (822)
. .-.+..-.+| .++.++.......-..++++|+.+.-.
T Consensus 81 ~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~ 123 (168)
T PF00158_consen 81 ARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFT 123 (168)
T ss_dssp TSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEE
T ss_pred cccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhc
Confidence 0 0011112334 567777777777777788888766543
No 262
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=30.65 E-value=36 Score=38.33 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=20.6
Q ss_pred HHHHcCCCceeeeeccCCCCcceee
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+.+.+|.+..++..++||||||...
T Consensus 7 ~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 7 EALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHcCCCCEEEEECCCCCCHHHHH
Confidence 4556788878888999999999864
No 263
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=30.50 E-value=27 Score=41.44 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=31.1
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..+.||.+++.+..=..+++. +.. +...+..|+-+|.+||||++.-
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~-----~~~-~a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQ-----ARV-VARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred ccCccCceEECCHHHHHHHHH-----HHH-HhCcCCCEEEECCCCccHHHHH
Confidence 457899988865433333332 222 2367888999999999997653
No 264
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=30.46 E-value=18 Score=42.83 Aligned_cols=17 Identities=47% Similarity=0.591 Sum_probs=15.4
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|.-.|++|+|||.|+
T Consensus 257 ~Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 257 GVFALMGPTGVGKTTTT 273 (484)
T ss_pred cEEEEECCCCccHHHHH
Confidence 46888999999999998
No 265
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=30.33 E-value=20 Score=35.11 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=11.2
Q ss_pred eeeeccCCCCccee
Q 003413 300 VFCYGATGAGKTYT 313 (822)
Q Consensus 300 IfAYGQTGSGKTyT 313 (822)
|+..|.+|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 45679999999854
No 266
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=30.30 E-value=21 Score=35.54 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=12.6
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998653
No 267
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=30.03 E-value=19 Score=44.71 Aligned_cols=18 Identities=39% Similarity=0.676 Sum_probs=15.8
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
|.-++..|.||||||++|
T Consensus 430 n~n~~I~G~tGsGKS~~~ 447 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFM 447 (797)
T ss_pred ccceEEEcCCCCCHHHHH
Confidence 556788999999999998
No 268
>PRK06696 uridine kinase; Validated
Probab=29.94 E-value=43 Score=34.96 Aligned_cols=29 Identities=34% Similarity=0.316 Sum_probs=19.9
Q ss_pred HHHHHHHH---cCCCceeeeeccCCCCcceee
Q 003413 286 ADLVEAVL---QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 286 ~pLV~svL---~GyN~tIfAYGQTGSGKTyTM 314 (822)
..|.+.++ .+....|...|.+|||||+..
T Consensus 8 ~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 8 KELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 33444443 355566778999999999864
No 269
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=29.91 E-value=64 Score=38.03 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=21.1
Q ss_pred HHHHHHHcC---CCceeeeeccCCCCccee
Q 003413 287 DLVEAVLQG---RNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 287 pLV~svL~G---yN~tIfAYGQTGSGKTyT 313 (822)
+=+|.++.| .+.+++.+|.+|||||.-
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~l 37 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLF 37 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHH
Confidence 345777775 477899999999999853
No 270
>PRK08118 topology modulation protein; Reviewed
Probab=29.76 E-value=22 Score=35.69 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=12.1
Q ss_pred eeeeccCCCCccee
Q 003413 300 VFCYGATGAGKTYT 313 (822)
Q Consensus 300 IfAYGQTGSGKTyT 313 (822)
|+..|+.|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999953
No 271
>CHL00176 ftsH cell division protein; Validated
Probab=29.63 E-value=21 Score=43.66 Aligned_cols=47 Identities=21% Similarity=0.245 Sum_probs=27.8
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHHHHHcC---------CCceeeeeccCCCCcceee
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVEAVLQG---------RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~G---------yN~tIfAYGQTGSGKTyTM 314 (822)
..++||.|.+-+...+++ ..+++.+-.. ....|+-||++|+|||+..
T Consensus 178 ~~~~f~dv~G~~~~k~~l-----~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEF-----EEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CCCCHHhccChHHHHHHH-----HHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 356778777653333222 3333322221 1235899999999999875
No 272
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.49 E-value=18 Score=40.21 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=15.9
Q ss_pred CCceeeeeccCCCCcceee
Q 003413 296 RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 296 yN~tIfAYGQTGSGKTyTM 314 (822)
...+|+-.|.||||||++|
T Consensus 142 ~~~siii~G~t~sGKTt~l 160 (312)
T COG0630 142 ARKSIIICGGTASGKTTLL 160 (312)
T ss_pred cCCcEEEECCCCCCHHHHH
Confidence 3446788999999999998
No 273
>PRK11546 zraP zinc resistance protein; Provisional
Probab=29.44 E-value=2.1e+02 Score=28.81 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 562 DQAKLLLELQKENRELRVQMARQQQRLLA 590 (822)
Q Consensus 562 d~~~li~eLq~Ei~~Lr~eL~~~q~~i~~ 590 (822)
...++..++..+...||++|-..+.++.+
T Consensus 51 ~~q~I~~~f~~~t~~LRqqL~aKr~ELnA 79 (143)
T PRK11546 51 AWQKIHNDFYAQTSALRQQLVSKRYEYNA 79 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999998776665543
No 274
>CHL00181 cbbX CbbX; Provisional
Probab=29.25 E-value=22 Score=39.04 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=13.3
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999999875
No 275
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=29.23 E-value=7.9e+02 Score=29.13 Aligned_cols=89 Identities=21% Similarity=0.144 Sum_probs=52.3
Q ss_pred CCccCchhhhhhhhccCCCceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhhcccccccccccCCCCCchhHHHHHHHHH
Q 003413 492 IPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKEGEANEETLQVPDSGTDQAKLLLELQ 571 (822)
Q Consensus 492 IPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk~~~~ne~~~~~~~~~~d~~~li~eLq 571 (822)
-|||++-+-+=+.-. ...|++ ...+..+-..|+.-+.++..|-..- -+ ...+.+......++.+|.
T Consensus 84 ~p~r~~~~~~~~~~~--------~~~~~~-~~~~~~~~s~~~~~~~~~f~i~~~q----t~-~d~PlC~eC~d~l~~~ld 149 (447)
T KOG2751|consen 84 PPVRDSDTEHNLSFE--------LGENGS-DGSNTKTLSATINVLTRLFDILSSQ----TQ-VDHPLCEECMDVLLNKLD 149 (447)
T ss_pred Ccccccccccccccc--------cccccc-hhhhhHHHHHHHHHHHHHHHHhhcc----CC-cccchHHHHHHHHHHHHH
Confidence 478776444333322 222322 2333333344556666666664321 11 124455566678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003413 572 KENRELRVQMARQQQRLLALEAQ 594 (822)
Q Consensus 572 ~Ei~~Lr~eL~~~q~~i~~le~q 594 (822)
+|++.+.++.+.-++.+..++.+
T Consensus 150 ~e~~~~~~e~~~Y~~~l~~Le~~ 172 (447)
T KOG2751|consen 150 KEVEDAEDEVDTYKACLQRLEQQ 172 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999998888777666654
No 276
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=29.09 E-value=20 Score=39.53 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=18.3
Q ss_pred CceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhh
Q 003413 510 ACNTVMIANISPCNLSFGETQNTLHWADRAKEIR 543 (822)
Q Consensus 510 nskT~mIa~ISPs~~~~eETLsTLrFA~Rak~Ik 543 (822)
-++|++++| .+.+|. |++|+|+.-+.
T Consensus 185 l~kTivfVT-----HDidEA---~kLadri~vm~ 210 (309)
T COG1125 185 LGKTIVFVT-----HDIDEA---LKLADRIAVMD 210 (309)
T ss_pred hCCEEEEEe-----cCHHHH---HhhhceEEEec
Confidence 468888886 456665 68898876554
No 277
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=28.90 E-value=20 Score=35.59 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=14.0
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+..|++|||||.++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778999999999876
No 278
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=28.69 E-value=36 Score=42.92 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=22.4
Q ss_pred HHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 279 EVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 279 eVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
-||. ....+++.+-++- .|+..|+||||||..+
T Consensus 5 Pi~~-~~~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 5 PVAA-VLPELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred CHHH-HHHHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 3554 3455666554443 4778999999999876
No 279
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=28.63 E-value=21 Score=39.06 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.9
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
-|+-+|++|||||+.-
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5889999999999764
No 280
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=28.60 E-value=24 Score=33.26 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=12.0
Q ss_pred eeeeccCCCCccee
Q 003413 300 VFCYGATGAGKTYT 313 (822)
Q Consensus 300 IfAYGQTGSGKTyT 313 (822)
|+..|++|||||..
T Consensus 2 I~i~G~~GsGKst~ 15 (147)
T cd02020 2 IAIDGPAGSGKSTV 15 (147)
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999875
No 281
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=28.54 E-value=42 Score=37.90 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=15.1
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
+.-|+.+|.+|+|||...
T Consensus 64 ~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCcEEEEeCCCChHHHHH
Confidence 456899999999998765
No 282
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=28.52 E-value=26 Score=34.64 Aligned_cols=15 Identities=33% Similarity=0.456 Sum_probs=12.9
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
++.+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999998754
No 283
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=28.44 E-value=37 Score=35.79 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=19.9
Q ss_pred HHHHHHHc-CC--CceeeeeccCCCCccee
Q 003413 287 DLVEAVLQ-GR--NGSVFCYGATGAGKTYT 313 (822)
Q Consensus 287 pLV~svL~-Gy--N~tIfAYGQTGSGKTyT 313 (822)
+-+|.++. |+ ..+++.+|.+|||||..
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~l 37 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIF 37 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHH
Confidence 34577665 43 56788999999999853
No 284
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.38 E-value=44 Score=39.09 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=15.4
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|+-.|++|+|||+|+
T Consensus 242 ~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL 258 (436)
T ss_pred cEEEEECCCCCcHHHHH
Confidence 57889999999999998
No 285
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=28.16 E-value=51 Score=34.98 Aligned_cols=30 Identities=27% Similarity=0.252 Sum_probs=23.1
Q ss_pred HHHHHHHHHc--CCCceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQ--GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~--GyN~tIfAYGQTGSGKTyTM 314 (822)
+..+++.+.+ .-...|.-||..|.|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 4556666666 56778999999999999764
No 286
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=28.13 E-value=5.8e+02 Score=25.84 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003413 567 LLELQKENRELRVQMAR 583 (822)
Q Consensus 567 i~eLq~Ei~~Lr~eL~~ 583 (822)
+.++++|+.++...+..
T Consensus 90 l~~l~~el~~l~~~~~~ 106 (191)
T PF04156_consen 90 LQQLQEELDQLQERIQE 106 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444433333333
No 287
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=28.11 E-value=36 Score=42.24 Aligned_cols=25 Identities=40% Similarity=0.707 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCCceeeeeccCCCCccee
Q 003413 286 ADLVEAVLQGRNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 286 ~pLV~svL~GyN~tIfAYGQTGSGKTyT 313 (822)
..++..+| |.|..|.+ +||+|||+.
T Consensus 68 ~eivq~AL-gkNtii~l--PTG~GKTfI 92 (746)
T KOG0354|consen 68 EELVQPAL-GKNTIIAL--PTGSGKTFI 92 (746)
T ss_pred HHHhHHhh-cCCeEEEe--ecCCCccch
Confidence 45778889 99986554 999999985
No 288
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=28.05 E-value=48 Score=36.41 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=23.8
Q ss_pred CCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 273 DSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 273 ~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+...|.++-+. +.+.+.+|.+ ++.-.+||+|||.+.
T Consensus 9 ~r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00488 9 PYPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CCHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHH
Confidence 34567665543 3444556754 566779999999876
No 289
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=28.05 E-value=48 Score=36.41 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=23.8
Q ss_pred CCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 273 DSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 273 ~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+...|.++-+. +.+.+.+|.+ ++.-.+||+|||.+.
T Consensus 9 ~r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00489 9 PYPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CCHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHH
Confidence 34567665543 3444556754 566779999999876
No 290
>PRK08233 hypothetical protein; Provisional
Probab=27.96 E-value=25 Score=34.64 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=12.6
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999764
No 291
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=27.90 E-value=21 Score=45.28 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=17.5
Q ss_pred CCCceeeeeccCCCCcceee
Q 003413 295 GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 295 GyN~tIfAYGQTGSGKTyTM 314 (822)
..|+-.+..|+||||||++|
T Consensus 473 ~~n~n~~I~G~TGSGKS~l~ 492 (893)
T TIGR03744 473 KKNAHLLILGPTGAGKSATL 492 (893)
T ss_pred CCcccEEEECCCCCCHHHHH
Confidence 34778899999999999998
No 292
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=27.88 E-value=44 Score=41.86 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=25.8
Q ss_pred HHhhhhHHHHHHHHH-cCCCceeeeeccCCCCcceee
Q 003413 279 EVYSRTTADLVEAVL-QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 279 eVF~~~v~pLV~svL-~GyN~tIfAYGQTGSGKTyTM 314 (822)
.||. ++.....+++ .|.|-||+.-|.+|||||.|.
T Consensus 68 Hifa-iA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 68 HIYS-LAQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CHHH-HHHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 3664 3333334443 699999999999999999986
No 293
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=27.81 E-value=20 Score=32.59 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=12.9
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678999999998765
No 294
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=27.76 E-value=43 Score=40.64 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.7
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
-..+--|+.|+|||||+
T Consensus 202 ~l~~I~GPPGTGKT~Tl 218 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTL 218 (649)
T ss_pred CceEeeCCCCCCceeeH
Confidence 45677899999999998
No 295
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=27.38 E-value=44 Score=41.11 Aligned_cols=35 Identities=14% Similarity=0.393 Sum_probs=25.2
Q ss_pred HHhhhhHHHHHHHHH-cCCCceeeeeccCCCCcceee
Q 003413 279 EVYSRTTADLVEAVL-QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 279 eVF~~~v~pLV~svL-~GyN~tIfAYGQTGSGKTyTM 314 (822)
.||. ++......++ .+.|-||+.-|.+|||||.|+
T Consensus 68 Hifa-vA~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 68 HIFA-IADAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cHHH-HHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 3664 3333333333 589999999999999999987
No 296
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=27.38 E-value=37 Score=35.15 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=20.9
Q ss_pred HHHHHHHc-CC--CceeeeeccCCCCcceee
Q 003413 287 DLVEAVLQ-GR--NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 287 pLV~svL~-Gy--N~tIfAYGQTGSGKTyTM 314 (822)
+-+|.++. |+ ..+++.+|++|+|||+..
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 34577774 54 557889999999998765
No 297
>PRK06217 hypothetical protein; Validated
Probab=27.13 E-value=26 Score=35.33 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=12.7
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
|+..|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998653
No 298
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=27.06 E-value=33 Score=42.03 Aligned_cols=43 Identities=26% Similarity=0.367 Sum_probs=27.4
Q ss_pred eEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCccee
Q 003413 265 FTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 265 F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyT 313 (822)
+.|+.+++.+..-..+.+. +.. +...+..|+-+|.+|||||+.
T Consensus 373 ~~~~~liG~S~~~~~~~~~-----~~~-~a~~~~pVLI~GE~GTGK~~l 415 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQ-----VEM-VAQSDSTVLILGETGTGKELI 415 (686)
T ss_pred ccccceeecCHHHHHHHHH-----HHH-HhCCCCCEEEECCCCcCHHHH
Confidence 5677666654333333322 222 346678899999999999874
No 299
>KOG0987 consensus DNA helicase PIF1/RRM3 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.05 E-value=79 Score=37.97 Aligned_cols=36 Identities=42% Similarity=0.748 Sum_probs=25.8
Q ss_pred CCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 274 STSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 274 ~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..|..||+ . ++..+.+..-..+| ||.-|+||||..
T Consensus 119 ~~eqk~v~d-~---~~~~v~~~~g~~ff-~g~~gtgKt~l~ 154 (540)
T KOG0987|consen 119 TPEQKRVYD-A---ILEAVENNLGGVFF-YGFGGTGKTYLL 154 (540)
T ss_pred CHHHHHHHH-H---HHHHHhccccceee-eccCCccceeeH
Confidence 356888997 3 23444455556677 999999999976
No 300
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=26.98 E-value=4.1e+02 Score=22.83 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003413 564 AKLLLELQKENRELRVQMARQQQ 586 (822)
Q Consensus 564 ~~li~eLq~Ei~~Lr~eL~~~q~ 586 (822)
+..+.+|++++..+..++...+.
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~ 25 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEK 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554443
No 301
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=26.95 E-value=1.6e+02 Score=30.21 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=23.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 643 APEGFRELQQTVKTLEAEIEKMKKDHALQ 671 (822)
Q Consensus 643 ~ee~~~el~~~~k~le~ele~~~~~~~~q 671 (822)
.+++..+++.++..+|+|+..+++-+...
T Consensus 27 sEeE~eeLr~EL~KvEeEI~TLrqvL~aK 55 (162)
T PF04201_consen 27 SEEEREELRSELAKVEEEIQTLRQVLAAK 55 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999998876533
No 302
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=26.92 E-value=45 Score=40.57 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=25.6
Q ss_pred cCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 271 FPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 271 F~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
|.....|+.+...+.. +.-......++..|+||||||...
T Consensus 234 f~lt~~Q~~ai~~I~~----~~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQ----DLKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCCHHHHHHHHHHHH----HhccCCCccEEEECCCCCcHHHHH
Confidence 3455557666655433 322334445789999999999864
No 303
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=26.89 E-value=39 Score=40.60 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=18.9
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+|..+++|.|+ ++..+||+|||.+.
T Consensus 21 ~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 21 IISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 44567789874 56679999999874
No 304
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=26.74 E-value=45 Score=36.75 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=17.7
Q ss_pred HHHcCC-CceeeeeccCCCCcceee
Q 003413 291 AVLQGR-NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 291 svL~Gy-N~tIfAYGQTGSGKTyTM 314 (822)
.+-.|. ..+++-||+.|+|||.+.
T Consensus 29 ~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 29 AIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 333453 446889999999999775
No 305
>PRK01172 ski2-like helicase; Provisional
Probab=26.73 E-value=41 Score=41.12 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=16.3
Q ss_pred HHHcCCCceeeeeccCCCCccee
Q 003413 291 AVLQGRNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 291 svL~GyN~tIfAYGQTGSGKTyT 313 (822)
.++.|.| ++..++||||||..
T Consensus 33 ~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 33 QLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHhcCCc--EEEECCCCchHHHH
Confidence 3467776 57778999999975
No 306
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=26.65 E-value=23 Score=36.00 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=12.6
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
|.-.|.+|||||++-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999864
No 307
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=26.59 E-value=66 Score=41.67 Aligned_cols=17 Identities=53% Similarity=0.601 Sum_probs=13.3
Q ss_pred CceeeeeccCCCCccee
Q 003413 297 NGSVFCYGATGAGKTYT 313 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyT 313 (822)
.+.+.-+|+||||||..
T Consensus 30 ~~l~~I~G~tGaGKSti 46 (1047)
T PRK10246 30 NGLFAITGPTGAGKTTL 46 (1047)
T ss_pred CCEEEEECCCCCCHHHH
Confidence 35566789999999874
No 308
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=26.52 E-value=32 Score=40.34 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=27.8
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceeecccCC----CCchHHHHHHHHHHhhhh
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTMLGTIE----NPGVMVLAIKDLFTKIRQ 337 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e----~~GIIpRal~~LF~~i~~ 337 (822)
++.-+=.++|. +-.|++|+||||.-.+-.. ..| -+-.+..||..+..
T Consensus 202 l~~fve~~~Nl--i~lGp~GTGKThla~~l~~~~a~~sG-~f~T~a~Lf~~L~~ 252 (449)
T TIGR02688 202 LLPLVEPNYNL--IELGPKGTGKSYIYNNLSPYVILISG-GTITVAKLFYNIST 252 (449)
T ss_pred hHHHHhcCCcE--EEECCCCCCHHHHHHHHhHHHHHHcC-CcCcHHHHHHHHHH
Confidence 33333366775 5679999999987754111 134 33345667766544
No 309
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=26.40 E-value=3.1e+02 Score=34.69 Aligned_cols=48 Identities=25% Similarity=0.245 Sum_probs=38.0
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 003413 641 KVAPEGFRELQQTVKTLEAEIEKMKKDHALQLKQKDDVIRELKRKSDK 688 (822)
Q Consensus 641 ~~~ee~~~el~~~~k~le~ele~~~~~~~~ql~~k~~li~el~~~~~~ 688 (822)
...+.++.+++.++..|+.|+++.+..+..-+..+.++-++|+....+
T Consensus 669 ~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~ 716 (769)
T PF05911_consen 669 KDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKE 716 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcc
Confidence 334667888999999999999999988886677777777777776544
No 310
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=26.33 E-value=35 Score=39.08 Aligned_cols=18 Identities=33% Similarity=0.623 Sum_probs=0.0
Q ss_pred cCCCceeeeeccCCCCcc
Q 003413 294 QGRNGSVFCYGATGAGKT 311 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKT 311 (822)
.|+.-+|++.|+.|+|||
T Consensus 20 ~Gi~f~im~~G~sG~GKt 37 (373)
T COG5019 20 KGIDFTIMVVGESGLGKT 37 (373)
T ss_pred cCCceEEEEecCCCCchh
No 311
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=26.26 E-value=33 Score=40.80 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=20.5
Q ss_pred HHHHHcCCCc------eeeeeccCCCCcceeec
Q 003413 289 VEAVLQGRNG------SVFCYGATGAGKTYTML 315 (822)
Q Consensus 289 V~svL~GyN~------tIfAYGQTGSGKTyTM~ 315 (822)
+..+++|.+. .|+-+|++|||||+.|-
T Consensus 18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 3456677444 57889999999999885
No 312
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=26.09 E-value=31 Score=33.11 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=16.8
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
...+..|+-+|..||||++..
T Consensus 18 a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHHH
Confidence 467888999999999998754
No 313
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=26.00 E-value=26 Score=29.88 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=12.3
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
++.+|..|+|||.+.
T Consensus 2 ~~~~g~~G~Gktt~~ 16 (99)
T cd01983 2 IVVTGKGGVGKTTLA 16 (99)
T ss_pred EEEECCCCCCHHHHH
Confidence 566788899999886
No 314
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=25.64 E-value=24 Score=32.34 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=13.3
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
-|..+|.+|||||..|
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999865
No 315
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=25.63 E-value=4.2e+02 Score=31.48 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=8.5
Q ss_pred HHHhHHHHHHHHHHHhh
Q 003413 671 QLKQKDDVIRELKRKSD 687 (822)
Q Consensus 671 ql~~k~~li~el~~~~~ 687 (822)
+...+++.|.+|+.+++
T Consensus 429 ~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 429 ALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555443
No 316
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.55 E-value=47 Score=38.93 Aligned_cols=17 Identities=47% Similarity=0.743 Sum_probs=14.8
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|+..|++|+|||+|+
T Consensus 224 ~vi~lvGptGvGKTTta 240 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSI 240 (432)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778899999999997
No 317
>PRK14531 adenylate kinase; Provisional
Probab=25.51 E-value=29 Score=34.97 Aligned_cols=15 Identities=33% Similarity=0.569 Sum_probs=12.9
Q ss_pred eeeeeccCCCCccee
Q 003413 299 SVFCYGATGAGKTYT 313 (822)
Q Consensus 299 tIfAYGQTGSGKTyT 313 (822)
-|+.+|..|||||+.
T Consensus 4 ~i~i~G~pGsGKsT~ 18 (183)
T PRK14531 4 RLLFLGPPGAGKGTQ 18 (183)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999875
No 318
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=25.50 E-value=47 Score=39.93 Aligned_cols=43 Identities=26% Similarity=0.478 Sum_probs=30.6
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCc
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGK 310 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGK 310 (822)
...|+||.+.+.+..=.++- .+ -.-..+.+++|+-+|.||+||
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~-----~~-akr~A~tdstVLi~GESGTGK 281 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVL-----EL-AKRIAKTDSTVLILGESGTGK 281 (560)
T ss_pred ccccchhhhccCCHHHHHHH-----HH-HHhhcCCCCcEEEecCCCccH
Confidence 45799999998744222222 12 233578999999999999999
No 319
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=25.45 E-value=26 Score=40.77 Aligned_cols=18 Identities=44% Similarity=0.534 Sum_probs=15.9
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
...|...|++|+|||.|+
T Consensus 191 g~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTT 208 (420)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999998
No 320
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.38 E-value=40 Score=41.38 Aligned_cols=16 Identities=31% Similarity=0.603 Sum_probs=14.5
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.++.||++|+|||.++
T Consensus 112 illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 112 ILLITGPSGCGKSTTI 127 (637)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4888999999999987
No 321
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=25.35 E-value=52 Score=41.24 Aligned_cols=18 Identities=44% Similarity=0.571 Sum_probs=15.8
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
.++++-+|+||+|||++.
T Consensus 488 ~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 357999999999999886
No 322
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.28 E-value=75 Score=36.58 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCCceeeeeccCCCCcceeeccc
Q 003413 286 ADLVEAVLQGRNGSVFCYGATGAGKTYTMLGT 317 (822)
Q Consensus 286 ~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~ 317 (822)
..+|..+|+|.+| +.+..||||||..+-+.
T Consensus 35 ~~cIpkILeGrdc--ig~AkTGsGKT~AFaLP 64 (442)
T KOG0340|consen 35 QACIPKILEGRDC--IGCAKTGSGKTAAFALP 64 (442)
T ss_pred hhhhHHHhccccc--ccccccCCCcchhhhHH
Confidence 3467788899987 56778999999998764
No 323
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=25.27 E-value=59 Score=35.66 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=18.8
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
.||.--|+..||+|.|||..+
T Consensus 43 ~GF~FNIMVVgqSglgkstli 63 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLI 63 (336)
T ss_pred ccCceEEEEEecCCCCchhhH
Confidence 799999999999999998643
No 324
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=25.26 E-value=22 Score=38.18 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=12.2
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
+.-.|++|||||+.+
T Consensus 31 v~iiGpSGSGKSTlL 45 (240)
T COG1126 31 VVIIGPSGSGKSTLL 45 (240)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999998765
No 325
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=25.25 E-value=23 Score=40.42 Aligned_cols=17 Identities=41% Similarity=0.686 Sum_probs=12.7
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
--++..|.||||||.+|
T Consensus 16 ~~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAI 32 (386)
T ss_dssp G-EEEEE-TTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 34788999999999766
No 326
>CHL00195 ycf46 Ycf46; Provisional
Probab=25.25 E-value=27 Score=41.47 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=14.8
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
-.|+-||+.|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46999999999999765
No 327
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=25.09 E-value=45 Score=39.09 Aligned_cols=41 Identities=29% Similarity=0.321 Sum_probs=26.1
Q ss_pred EeccccCCCCchhHHhhhhHHHHHHHHHcCCC-ceeeeeccCCCCcceee
Q 003413 266 TFDASFPDSTSQHEVYSRTTADLVEAVLQGRN-GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 266 ~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN-~tIfAYGQTGSGKTyTM 314 (822)
+||.|++. +.+ +..+...+-.|.- .+++-||+.|+|||.+.
T Consensus 15 ~~~diiGq----~~~----v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 15 TFSEILGQ----DAV----VAVLKNALRFNRAAHAYLFSGIRGTGKTTLA 56 (451)
T ss_pred CHHHhcCc----HHH----HHHHHHHHHcCCCceEEEEEcCCCCCHHHHH
Confidence 56777753 333 3334444445543 45777999999999876
No 328
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.05 E-value=34 Score=37.92 Aligned_cols=20 Identities=40% Similarity=0.703 Sum_probs=15.6
Q ss_pred CCCc--eeeeeccCCCCcceee
Q 003413 295 GRNG--SVFCYGATGAGKTYTM 314 (822)
Q Consensus 295 GyN~--tIfAYGQTGSGKTyTM 314 (822)
|..- .|++||+.|+|||..-
T Consensus 207 gidppkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 207 GIDPPKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CCCCCCceEEeCCCCCchhHHH
Confidence 5543 5899999999998653
No 329
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=24.95 E-value=7.6e+02 Score=25.96 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 565 KLLLELQKENRELRVQMARQQQRL 588 (822)
Q Consensus 565 ~li~eLq~Ei~~Lr~eL~~~q~~i 588 (822)
.+|..|.+++.++|.......+.+
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m 50 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLM 50 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444443333
No 330
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=24.91 E-value=25 Score=35.63 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=12.7
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
|.--|.+|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999987
No 331
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=24.90 E-value=31 Score=41.46 Aligned_cols=40 Identities=23% Similarity=0.422 Sum_probs=29.8
Q ss_pred eeeeeccCCCCcceeeccc---CC---CCchHHHHHHHHHHhhhhc
Q 003413 299 SVFCYGATGAGKTYTMLGT---IE---NPGVMVLAIKDLFTKIRQR 338 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM~G~---~e---~~GIIpRal~~LF~~i~~~ 338 (822)
-||..|+|.|||||--.-. .. -.|-+-....++|++....
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~ 238 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNAL 238 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhc
Confidence 4899999999999976432 11 1467788888999988653
No 332
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=24.86 E-value=28 Score=34.51 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.4
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+..|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778999999998754
No 333
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=24.86 E-value=2.7e+02 Score=34.18 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003413 565 KLLLELQKENRELRVQMARQ 584 (822)
Q Consensus 565 ~li~eLq~Ei~~Lr~eL~~~ 584 (822)
..+..|+.|++.|+.+++..
T Consensus 249 ~ri~~lE~e~e~L~~ql~~~ 268 (629)
T KOG0963|consen 249 QRIVFLEREVEQLREQLAKA 268 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45566666666666666554
No 334
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=24.84 E-value=30 Score=33.62 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=13.3
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|..+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998654
No 335
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=24.82 E-value=29 Score=37.82 Aligned_cols=17 Identities=35% Similarity=0.626 Sum_probs=14.3
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
.+|...|++|+|||.|.
T Consensus 73 ~vi~l~G~~G~GKTTt~ 89 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTI 89 (272)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45666699999999997
No 336
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=24.60 E-value=32 Score=34.07 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=13.5
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+..|..|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999999865
No 337
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=24.57 E-value=2.2e+02 Score=28.31 Aligned_cols=35 Identities=17% Similarity=0.387 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 003413 652 QTVKTLEAEIEKMKKDHALQLKQKDDVIRELKRKS 686 (822)
Q Consensus 652 ~~~k~le~ele~~~~~~~~ql~~k~~li~el~~~~ 686 (822)
++|++|+.|++.+.+++....++++++++.+...+
T Consensus 104 ~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i 138 (144)
T PF11221_consen 104 KRIKELEEENEEAEEELQEAVKEAEELLKQVQELI 138 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666666666776666666554
No 338
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.55 E-value=48 Score=39.14 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=25.7
Q ss_pred eEeccccCCCCchhHHhhhhHHHHHHHHHcCCC-ceeeeeccCCCCcceee
Q 003413 265 FTFDASFPDSTSQHEVYSRTTADLVEAVLQGRN-GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 265 F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN-~tIfAYGQTGSGKTyTM 314 (822)
-+||.|.++ +.+ ...|...+-.|.- ..++-||+.|+|||++.
T Consensus 11 ~~~~divGq----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 11 KTFSEVVGQ----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CCHHHccCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 356666654 444 2223333334433 45889999999999876
No 339
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.55 E-value=54 Score=36.77 Aligned_cols=27 Identities=26% Similarity=0.446 Sum_probs=19.3
Q ss_pred HHHHHHcCC-CceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGR-NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~Gy-N~tIfAYGQTGSGKTyTM 314 (822)
+...+-.|. ...++-||+.|+|||++.
T Consensus 29 l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 29 LLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 444444564 447888999999999776
No 340
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=24.55 E-value=27 Score=41.67 Aligned_cols=16 Identities=44% Similarity=0.775 Sum_probs=13.9
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+-||++|+|||++.
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999998764
No 341
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=24.43 E-value=29 Score=33.06 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=13.7
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.+.-.|++|||||.++
T Consensus 17 ~v~I~GpSGsGKSTLl 32 (107)
T cd00820 17 GVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4677899999999876
No 342
>PRK00300 gmk guanylate kinase; Provisional
Probab=24.42 E-value=29 Score=35.20 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=14.4
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
...|...|++|||||..+
T Consensus 5 g~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346788999999999654
No 343
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=24.23 E-value=41 Score=35.94 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=24.0
Q ss_pred CceeeeeccCCCCcceeec------ccC-----CCCchHHHHHHHHHHhhhh
Q 003413 297 NGSVFCYGATGAGKTYTML------GTI-----ENPGVMVLAIKDLFTKIRQ 337 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM~------G~~-----e~~GIIpRal~~LF~~i~~ 337 (822)
+.+-..+|++|||||.|+- |.. -.+++=..++..||.-+.+
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~ 83 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQ 83 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhh
Confidence 3444579999999999973 321 1345555555555554433
No 344
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=24.07 E-value=51 Score=39.36 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=17.6
Q ss_pred HHcCC-CceeeeeccCCCCcceee
Q 003413 292 VLQGR-NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 292 vL~Gy-N~tIfAYGQTGSGKTyTM 314 (822)
+..|. ...++-||+.|+|||.+.
T Consensus 37 i~~~ri~~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 37 ILNDRLAGGYLLTGIRGVGKTTSA 60 (507)
T ss_pred HHcCCCCceEEEECCCCCCHHHHH
Confidence 33443 357899999999999875
No 345
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=24.04 E-value=29 Score=43.36 Aligned_cols=17 Identities=47% Similarity=0.606 Sum_probs=15.4
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
.+|.-.|++|+|||+|+
T Consensus 186 ~Vi~lVGpnGvGKTTTi 202 (767)
T PRK14723 186 GVLALVGPTGVGKTTTT 202 (767)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 47788999999999998
No 346
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=24.00 E-value=33 Score=38.60 Aligned_cols=42 Identities=26% Similarity=0.469 Sum_probs=29.2
Q ss_pred ceeeeeccCCCCcceee-----------cccCC------CCchHHHHHHHHHHhhhhcC
Q 003413 298 GSVFCYGATGAGKTYTM-----------LGTIE------NPGVMVLAIKDLFTKIRQRS 339 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM-----------~G~~e------~~GIIpRal~~LF~~i~~~~ 339 (822)
..|+.||+.|+||+|.- |.-.. .-|=-.+.+..||+...+..
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~k 225 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENK 225 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 46899999999999843 21111 12666778899998876654
No 347
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=23.88 E-value=28 Score=42.90 Aligned_cols=18 Identities=39% Similarity=0.711 Sum_probs=16.5
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
|+-++..|.||||||++|
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 777899999999999998
No 348
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.79 E-value=29 Score=40.26 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=14.9
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
-.|+..|++|+|||+|+
T Consensus 207 ~ii~lvGptGvGKTTt~ 223 (407)
T PRK12726 207 RIISLIGQTGVGKTTTL 223 (407)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778999999999998
No 349
>PRK11020 hypothetical protein; Provisional
Probab=23.77 E-value=3.2e+02 Score=26.69 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 644 PEGFRELQQTVKTLEAEIEKMKKDHALQLK 673 (822)
Q Consensus 644 ee~~~el~~~~k~le~ele~~~~~~~~ql~ 673 (822)
.+.+.+...++..++.+++.++......|.
T Consensus 30 ~~~i~qf~~E~~~l~k~I~~lk~~~~~~ls 59 (118)
T PRK11020 30 AEKYAQFEKEKATLEAEIARLKEVQSQKLS 59 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777888888888887766554443
No 350
>PHA01747 putative ATP-dependent protease
Probab=23.73 E-value=29 Score=39.97 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=27.6
Q ss_pred HhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 280 VYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 280 VF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
++=.-+-|+|++...+-|.-++=.|+.||||||+.
T Consensus 173 l~L~RLiPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 173 LTLPRLLPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred HHHHhhhhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 33334668888667788888999999999999975
No 351
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=23.65 E-value=54 Score=38.28 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=24.2
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
-++.+-+|....-|..|.-||||||.+
T Consensus 40 ~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 40 DLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 457788999999999999999999987
No 352
>PRK13767 ATP-dependent helicase; Provisional
Probab=23.48 E-value=39 Score=42.89 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=17.0
Q ss_pred HHHHcCCCceeeeeccCCCCcceee
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..+++|.|+.| ..+||||||...
T Consensus 42 ~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 42 PLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHcCCCEEE--ECCCCCcHHHHH
Confidence 34578887544 569999999863
No 353
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=23.48 E-value=56 Score=35.81 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=20.6
Q ss_pred HHHHHHHcCC---CceeeeeccCCCCcceee
Q 003413 287 DLVEAVLQGR---NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 287 pLV~svL~Gy---N~tIfAYGQTGSGKTyTM 314 (822)
+-++.+|.|- ...+..||.+|||||..+
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4456677653 456789999999999765
No 354
>PTZ00014 myosin-A; Provisional
Probab=23.46 E-value=62 Score=40.95 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=25.0
Q ss_pred HhhhhHHHHHHHHH-cCCCceeeeeccCCCCcceee
Q 003413 280 VYSRTTADLVEAVL-QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 280 VF~~~v~pLV~svL-~GyN~tIfAYGQTGSGKTyTM 314 (822)
||. ++.....+++ .+.|-||+.-|.+|||||.+.
T Consensus 166 ifa-vA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 166 VFT-TARRALENLHGVKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred HHH-HHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 664 3333444444 689999999999999999764
No 355
>PRK04040 adenylate kinase; Provisional
Probab=23.42 E-value=34 Score=35.18 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=13.9
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+.+|..|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4788999999999875
No 356
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=23.40 E-value=36 Score=41.34 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=17.5
Q ss_pred CCceeeeeccCCCCcceeecc
Q 003413 296 RNGSVFCYGATGAGKTYTMLG 316 (822)
Q Consensus 296 yN~tIfAYGQTGSGKTyTM~G 316 (822)
..+.++..|..|||||.||..
T Consensus 13 ~~~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 13 VTGPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCCCEEEEecCCCCHHHHHHH
Confidence 345678999999999999965
No 357
>PRK09039 hypothetical protein; Validated
Probab=23.37 E-value=4.7e+02 Score=29.76 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003413 648 RELQQTVKTLEAEIEKMK 665 (822)
Q Consensus 648 ~el~~~~k~le~ele~~~ 665 (822)
.+.+.++..++++|+.+.
T Consensus 168 ~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 168 RESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555544
No 358
>PRK06851 hypothetical protein; Provisional
Probab=23.22 E-value=41 Score=38.53 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=22.7
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+.+++++|.+-.++..|.+|+|||++|
T Consensus 21 ~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 21 LYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred hhhhhccccceEEEEECCCCCCHHHHH
Confidence 455666778888999999999999988
No 359
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=23.14 E-value=52 Score=35.09 Aligned_cols=25 Identities=36% Similarity=0.636 Sum_probs=18.3
Q ss_pred HHHHHcC---CCceeeeeccCCCCccee
Q 003413 289 VEAVLQG---RNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 289 V~svL~G---yN~tIfAYGQTGSGKTyT 313 (822)
++.++.| ....++.||..|||||.-
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f 39 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIF 39 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHH
Confidence 4555554 356789999999999753
No 360
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=23.09 E-value=52 Score=37.28 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=34.8
Q ss_pred cCCeeeEeccccCCCCchhHHhhhhHHHHHHHHHc---CCCc--eeeeeccCCCCccee
Q 003413 260 LRGRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQ---GRNG--SVFCYGATGAGKTYT 313 (822)
Q Consensus 260 ~~~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~---GyN~--tIfAYGQTGSGKTyT 313 (822)
...+.++||.|-+-.---.++-+.+.-||+...+- |... .+.-||+.|+|||+-
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTll 182 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLL 182 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHH
Confidence 34678899998875332333444455666664432 4333 478899999999975
No 361
>PRK10689 transcription-repair coupling factor; Provisional
Probab=22.90 E-value=59 Score=42.63 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=24.0
Q ss_pred CCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCccee
Q 003413 272 PDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 272 ~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyT 313 (822)
.+...|.+++..+..++ -.+...-++++|+||||||-+
T Consensus 600 ~~T~~Q~~aI~~il~d~----~~~~~~d~Ll~a~TGsGKT~v 637 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDM----CQPLAMDRLVCGDVGFGKTEV 637 (1147)
T ss_pred CCCHHHHHHHHHHHHHh----hcCCCCCEEEEcCCCcCHHHH
Confidence 44555666655433332 234445589999999999964
No 362
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=22.83 E-value=33 Score=34.94 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=18.9
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
-+...+.| -+++-.|++|.||+..+
T Consensus 28 ~l~~~l~~--k~~vl~G~SGvGKSSLi 52 (161)
T PF03193_consen 28 ELKELLKG--KTSVLLGQSGVGKSSLI 52 (161)
T ss_dssp HHHHHHTT--SEEEEECSTTSSHHHHH
T ss_pred HHHHHhcC--CEEEEECCCCCCHHHHH
Confidence 34566777 56667799999998765
No 363
>PRK14532 adenylate kinase; Provisional
Probab=22.81 E-value=36 Score=34.16 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=12.8
Q ss_pred eeeeeccCCCCccee
Q 003413 299 SVFCYGATGAGKTYT 313 (822)
Q Consensus 299 tIfAYGQTGSGKTyT 313 (822)
.|+..|..|||||+.
T Consensus 2 ~i~~~G~pGsGKsT~ 16 (188)
T PRK14532 2 NLILFGPPAAGKGTQ 16 (188)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999865
No 364
>PRK10867 signal recognition particle protein; Provisional
Probab=22.81 E-value=67 Score=37.64 Aligned_cols=17 Identities=41% Similarity=0.534 Sum_probs=15.0
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|+..|.+|||||.|.
T Consensus 101 ~vI~~vG~~GsGKTTta 117 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTA 117 (433)
T ss_pred EEEEEECCCCCcHHHHH
Confidence 46888899999999987
No 365
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=22.80 E-value=29 Score=37.20 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=12.9
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
|.-.|++|||||..|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999876
No 366
>PRK06762 hypothetical protein; Provisional
Probab=22.69 E-value=37 Score=33.28 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=12.3
Q ss_pred eeeeeccCCCCccee
Q 003413 299 SVFCYGATGAGKTYT 313 (822)
Q Consensus 299 tIfAYGQTGSGKTyT 313 (822)
.|...|..|||||+.
T Consensus 4 li~i~G~~GsGKST~ 18 (166)
T PRK06762 4 LIIIRGNSGSGKTTI 18 (166)
T ss_pred EEEEECCCCCCHHHH
Confidence 466789999999864
No 367
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=22.64 E-value=46 Score=41.49 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=19.6
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.|..++.+ +..++..|..|+||||+|
T Consensus 360 Av~~i~~s-~~~~il~G~aGTGKTtll 385 (744)
T TIGR02768 360 AVRHVTGS-GDIAVVVGRAGTGKSTML 385 (744)
T ss_pred HHHHHhcC-CCEEEEEecCCCCHHHHH
Confidence 44555555 446778999999999998
No 368
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=22.52 E-value=45 Score=41.36 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=22.1
Q ss_pred HHHHHHHcCCCceeeeeccCCCCcceeecc
Q 003413 287 DLVEAVLQGRNGSVFCYGATGAGKTYTMLG 316 (822)
Q Consensus 287 pLV~svL~GyN~tIfAYGQTGSGKTyTM~G 316 (822)
.+++-+..+....++-||++|+|||....|
T Consensus 193 ~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 193 RTIQVLCRRKKNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHH
Confidence 455545555566788999999999998733
No 369
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=22.50 E-value=60 Score=40.30 Aligned_cols=17 Identities=47% Similarity=0.626 Sum_probs=14.7
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
++++-+|+||+|||++.
T Consensus 485 ~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELA 501 (731)
T ss_pred eeEEEECCCCccHHHHH
Confidence 46889999999999775
No 370
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=22.38 E-value=31 Score=34.81 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=13.4
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+-.|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677999999998765
No 371
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=22.30 E-value=47 Score=39.56 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=30.7
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
...+.||.+++.+..-..+.+. +.. +...+..|+-+|.+||||++.-
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~-----~~~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQ-----ARK-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred cccccccceeECCHHHHHHHHH-----HHH-HhCCCCCEEEECCCCccHHHHH
Confidence 3468899988764432333322 122 2446788999999999997654
No 372
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=22.24 E-value=57 Score=39.54 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=17.5
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..++.|.++ ++.++||||||.+.
T Consensus 34 i~~il~g~dv--lv~apTGsGKTl~y 57 (607)
T PRK11057 34 IDAVLSGRDC--LVVMPTGGGKSLCY 57 (607)
T ss_pred HHHHHcCCCE--EEEcCCCchHHHHH
Confidence 4456788876 45579999999753
No 373
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=22.18 E-value=9.6e+02 Score=26.94 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccccCCccccccCCccChhhhhc
Q 003413 562 DQAKLLLELQKENRELRVQMARQQQRLLALEAQALAANSPTPSSVSSLLTPPSTAHPNEKRKPRSSFLHGNCFTPELKRK 641 (822)
Q Consensus 562 d~~~li~eLq~Ei~~Lr~eL~~~q~~i~~le~q~~a~~~~~~s~~~~~~~~~~~~~~~e~~k~~~~~l~~~~~~~e~k~~ 641 (822)
+....+.++++|++.|+.+...+.+++..++.+
T Consensus 40 ~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e----------------------------------------------- 72 (314)
T PF04111_consen 40 DSEEDIEELEEELEKLEQEEEELLQELEELEKE----------------------------------------------- 72 (314)
T ss_dssp --HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 003413 642 VAPEGFRELQQTVKTLEAEIEKMKKDHALQLKQKDDVIRELKRKSDKQL 690 (822)
Q Consensus 642 ~~ee~~~el~~~~k~le~ele~~~~~~~~ql~~k~~li~el~~~~~~~~ 690 (822)
..++.+++.+++.+.+.+.++-..-++..-.+..++.+..++..
T Consensus 73 -----~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~ 116 (314)
T PF04111_consen 73 -----REELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERD 116 (314)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 374
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=22.13 E-value=38 Score=39.28 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=15.2
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
...|+-+|+||+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 356999999999998764
No 375
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=22.05 E-value=42 Score=39.34 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=16.2
Q ss_pred CCCceeeeeccCCCCcceee
Q 003413 295 GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 295 GyN~tIfAYGQTGSGKTyTM 314 (822)
+....|+-||+.|+|||++-
T Consensus 274 ~~~~giLl~GpPGtGKT~lA 293 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLA 293 (494)
T ss_pred CCCCeeEEECCCCCCHHHHH
Confidence 34557999999999998764
No 376
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=21.96 E-value=1.6e+02 Score=33.81 Aligned_cols=60 Identities=23% Similarity=0.405 Sum_probs=40.3
Q ss_pred cccCCCCchhHHhhhhHHHHHHHHHcCCCc---eeeeeccCCCCcc---------------eeecccC--CCC-chHHHH
Q 003413 269 ASFPDSTSQHEVYSRTTADLVEAVLQGRNG---SVFCYGATGAGKT---------------YTMLGTI--ENP-GVMVLA 327 (822)
Q Consensus 269 ~VF~~~asQeeVF~~~v~pLV~svL~GyN~---tIfAYGQTGSGKT---------------yTM~G~~--e~~-GIIpRa 327 (822)
.+|+- ++.-+..+. .+.++-.|+.. .++-.|+.|+||| ||+.|++ ++| ++||.-
T Consensus 62 ~~~G~----~~~i~~lV~-~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P~~ 136 (358)
T PF08298_consen 62 EFYGM----EETIERLVN-YFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFPKE 136 (358)
T ss_pred cccCc----HHHHHHHHH-HHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCCHh
Confidence 56664 333333343 45666666644 5889999999996 6777775 334 888888
Q ss_pred HHHHHH
Q 003413 328 IKDLFT 333 (822)
Q Consensus 328 l~~LF~ 333 (822)
+...|.
T Consensus 137 ~r~~~~ 142 (358)
T PF08298_consen 137 LRREFE 142 (358)
T ss_pred HHHHHH
Confidence 888775
No 377
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=21.93 E-value=47 Score=42.79 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=21.3
Q ss_pred HHHHHHHcCCCceeeeeccCCCCcceeec
Q 003413 287 DLVEAVLQGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 287 pLV~svL~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
..|..++.+.+. ++..|..|+||||+|-
T Consensus 353 ~Av~~il~s~~v-~vv~G~AGTGKTT~l~ 380 (988)
T PRK13889 353 DALAHVTDGRDL-GVVVGYAGTGKSAMLG 380 (988)
T ss_pred HHHHHHhcCCCe-EEEEeCCCCCHHHHHH
Confidence 356667777664 4589999999999863
No 378
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=21.92 E-value=41 Score=37.52 Aligned_cols=16 Identities=38% Similarity=0.642 Sum_probs=13.4
Q ss_pred ceeeeeccCCCCccee
Q 003413 298 GSVFCYGATGAGKTYT 313 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyT 313 (822)
-.|+..|+||||||-.
T Consensus 5 ~ii~I~GpTasGKS~L 20 (300)
T PRK14729 5 KIVFIFGPTAVGKSNI 20 (300)
T ss_pred cEEEEECCCccCHHHH
Confidence 3688999999999863
No 379
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=21.83 E-value=34 Score=35.49 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=13.7
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+..|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999764
No 380
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=21.81 E-value=1.1e+02 Score=39.14 Aligned_cols=36 Identities=28% Similarity=0.563 Sum_probs=22.5
Q ss_pred CCceeeeeccCCCCcce-------eecccCCCCchHHHHHHHHHH
Q 003413 296 RNGSVFCYGATGAGKTY-------TMLGTIENPGVMVLAIKDLFT 333 (822)
Q Consensus 296 yN~tIfAYGQTGSGKTy-------TM~G~~e~~GIIpRal~~LF~ 333 (822)
.++..+-+|+||||||. .|||....-| .....++..
T Consensus 24 ~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~--~~~~~~~i~ 66 (908)
T COG0419 24 DSGIFLIVGPNGAGKSSILDAITFALYGKTPRLG--AFSLDDLIR 66 (908)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc--chhhhHHHh
Confidence 34455678999999964 5677665444 344444443
No 381
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=21.76 E-value=9.2e+02 Score=29.06 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHhh
Q 003413 674 QKDDVIRELKRKSD 687 (822)
Q Consensus 674 ~k~~li~el~~~~~ 687 (822)
.|..+++.+..+.+
T Consensus 149 ak~~l~~~~~~~~~ 162 (514)
T TIGR03319 149 AKEILLEEVEEEAR 162 (514)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444544444443
No 382
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=21.73 E-value=2.6e+02 Score=26.00 Aligned_cols=40 Identities=25% Similarity=0.349 Sum_probs=31.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 003413 643 APEGFRELQQTVKTLEAEIEKMKKDHALQLKQKDDVIREL 682 (822)
Q Consensus 643 ~ee~~~el~~~~k~le~ele~~~~~~~~ql~~k~~li~el 682 (822)
-+..+.+++.++..+..|.+.++..+....+++..++.-|
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556888888899999999988888887777777776543
No 383
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.72 E-value=59 Score=39.52 Aligned_cols=41 Identities=32% Similarity=0.368 Sum_probs=25.9
Q ss_pred EeccccCCCCchhHHhhhhHHHHHHHHHcC-CCceeeeeccCCCCcceee
Q 003413 266 TFDASFPDSTSQHEVYSRTTADLVEAVLQG-RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 266 ~FD~VF~~~asQeeVF~~~v~pLV~svL~G-yN~tIfAYGQTGSGKTyTM 314 (822)
+||.|.+ |+.+... |...+-.| ...+++-||+.|+|||.+.
T Consensus 11 ~f~eivG----q~~i~~~----L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A 52 (584)
T PRK14952 11 TFAEVVG----QEHVTEP----LSSALDAGRINHAYLFSGPRGCGKTSSA 52 (584)
T ss_pred cHHHhcC----cHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 4666664 5555543 32333344 3446789999999999875
No 384
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=21.67 E-value=36 Score=39.59 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=15.0
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
+.|+-+|+||+|||+..
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 57999999999999875
No 385
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.61 E-value=2.5e+02 Score=24.06 Aligned_cols=38 Identities=32% Similarity=0.511 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 003413 646 GFRELQQTVKTLEAEIEKMKKDHALQLKQKDDVIRELKR 684 (822)
Q Consensus 646 ~~~el~~~~k~le~ele~~~~~~~~ql~~k~~li~el~~ 684 (822)
++.+++.+++++..+.++++++.. .++.-.+.++++.+
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~-~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIE-RLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHH
Confidence 455566666666666666655544 44344445556555
No 386
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=21.46 E-value=32 Score=33.31 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=11.7
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
|+..|++|||||..+
T Consensus 2 i~i~GpsGsGKstl~ 16 (137)
T cd00071 2 IVLSGPSGVGKSTLL 16 (137)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999998643
No 387
>PRK12704 phosphodiesterase; Provisional
Probab=21.38 E-value=8.8e+02 Score=29.28 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=7.3
Q ss_pred ccccCCCCceeeccc
Q 003413 740 DITAANSPSVTALSG 754 (822)
Q Consensus 740 ~~~~~~~~~~~~~~~ 754 (822)
||-...+|.+-.+.|
T Consensus 243 d~iiddtp~~v~ls~ 257 (520)
T PRK12704 243 DLIIDDTPEAVILSG 257 (520)
T ss_pred eEEEcCCCCeEEEec
Confidence 333344566555544
No 388
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=21.20 E-value=1.1e+03 Score=26.39 Aligned_cols=43 Identities=28% Similarity=0.292 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHhhhhhccccccc
Q 003413 655 KTLEAEIEKMKKDHAL-QLKQKDDVIRELKRKSDKQLERGGTEG 697 (822)
Q Consensus 655 k~le~ele~~~~~~~~-ql~~k~~li~el~~~~~~~~~~~~~~~ 697 (822)
.+++-|+..++++++. .+.-|+.++-+|++|+++..+.---++
T Consensus 93 ~eYe~E~~aAk~e~E~~~~lLke~l~seleeKkrkieeeR~smD 136 (291)
T KOG4466|consen 93 REYECEIKAAKKEYESKKKLLKENLISELEEKKRKIEEERLSMD 136 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3677777778877763 345677888889888887776544333
No 389
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=21.15 E-value=58 Score=38.42 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=21.7
Q ss_pred HHHHHHHHcC---CCceeeeeccCCCCcceee
Q 003413 286 ADLVEAVLQG---RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 286 ~pLV~svL~G---yN~tIfAYGQTGSGKTyTM 314 (822)
-+=++.++.| ....++.+|.+|||||.-.
T Consensus 17 I~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~ 48 (509)
T PRK09302 17 IEGFDDITHGGLPKGRPTLVSGTAGTGKTLFA 48 (509)
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCHHHHH
Confidence 3445777764 4678899999999998643
No 390
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.05 E-value=5.8e+02 Score=30.54 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003413 567 LLELQKENRELRVQMARQQ 585 (822)
Q Consensus 567 i~eLq~Ei~~Lr~eL~~~q 585 (822)
+..|..+|+.|+++.+.++
T Consensus 75 ~~~l~~~N~~l~~eN~~L~ 93 (472)
T TIGR03752 75 LAKLISENEALKAENERLQ 93 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 391
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=21.03 E-value=57 Score=39.80 Aligned_cols=41 Identities=27% Similarity=0.312 Sum_probs=25.1
Q ss_pred EeccccCCCCchhHHhhhhHHHHHHHHHcC-CCceeeeeccCCCCcceee
Q 003413 266 TFDASFPDSTSQHEVYSRTTADLVEAVLQG-RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 266 ~FD~VF~~~asQeeVF~~~v~pLV~svL~G-yN~tIfAYGQTGSGKTyTM 314 (822)
+|+.|.+ |+.+- ..+...+-.| ..-+++-||+.|+|||.++
T Consensus 14 ~F~dIIG----Qe~iv----~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA 55 (605)
T PRK05896 14 NFKQIIG----QELIK----KILVNAILNNKLTHAYIFSGPRGIGKTSIA 55 (605)
T ss_pred CHHHhcC----cHHHH----HHHHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 4566664 33333 2333333344 3447899999999999876
No 392
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=21.00 E-value=43 Score=37.09 Aligned_cols=14 Identities=50% Similarity=0.933 Sum_probs=12.4
Q ss_pred eeeeeccCCCCcce
Q 003413 299 SVFCYGATGAGKTY 312 (822)
Q Consensus 299 tIfAYGQTGSGKTy 312 (822)
.++.||+.|+|||.
T Consensus 207 GvLmYGPPGTGKTl 220 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTL 220 (424)
T ss_pred ceEeeCCCCCcHHH
Confidence 58999999999974
No 393
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=20.98 E-value=40 Score=33.04 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=12.3
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
|+..|.+|||||+..
T Consensus 2 i~i~G~~GsGKSTla 16 (149)
T cd02027 2 IWLTGLSGSGKSTIA 16 (149)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999997653
No 394
>PRK14530 adenylate kinase; Provisional
Probab=20.93 E-value=40 Score=34.86 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=13.1
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+..|.+|||||+..
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999998653
No 395
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=20.88 E-value=32 Score=31.49 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=12.4
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
|...|.+|+|||..+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998765
No 396
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=20.77 E-value=35 Score=42.97 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=15.6
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
|.-++..|.||||||++|
T Consensus 449 N~N~~I~G~sGsGKS~l~ 466 (844)
T PRK13721 449 NYNMAVCGTSGAGKTGLI 466 (844)
T ss_pred cccEEEEcCCCCCHHHHH
Confidence 455788999999999998
No 397
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=20.76 E-value=61 Score=35.55 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=30.6
Q ss_pred ccccCCCCchhHHhhhhHHHHHHHHHcCC---CceeeeeccCCCCcceeecccCCCCchHHHHHHHHHH
Q 003413 268 DASFPDSTSQHEVYSRTTADLVEAVLQGR---NGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFT 333 (822)
Q Consensus 268 D~VF~~~asQeeVF~~~v~pLV~svL~Gy---N~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~ 333 (822)
+.||+.+....+ .+..++-.+|.|. -..+|.||..|+||+..+ .++..||.
T Consensus 48 ~~~~~~d~~~~~----~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~-----------~~l~~l~G 101 (304)
T TIGR01613 48 LETFGGDNELIE----YLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQ-----------NLLSNLLG 101 (304)
T ss_pred HHHhCCCHHHHH----HHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHH-----------HHHHHHhC
Confidence 455654432222 2334455555553 346899999999996654 45666664
No 398
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=20.70 E-value=67 Score=37.62 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.8
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
...|+..|.+|+|||+|.
T Consensus 100 ~~vi~lvG~~GvGKTTta 117 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTC 117 (429)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357889999999999997
No 399
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=20.65 E-value=47 Score=40.69 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=14.2
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
-++++|+||||||.++
T Consensus 213 H~lv~ApTgsGKgvg~ 228 (623)
T TIGR02767 213 HMIFFAGSGGFKTTSV 228 (623)
T ss_pred eEEEEeCCCCCcccee
Confidence 4789999999999976
No 400
>PRK13531 regulatory ATPase RavA; Provisional
Probab=20.52 E-value=61 Score=38.67 Aligned_cols=29 Identities=31% Similarity=0.397 Sum_probs=20.2
Q ss_pred hHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 284 TTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 284 ~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
++.-++..++.|. .|+-+|++|+|||+.-
T Consensus 28 vI~lll~aalag~--hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 28 AIRLCLLAALSGE--SVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHHHccCC--CEEEECCCChhHHHHH
Confidence 3444555556554 4688999999998764
No 401
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.52 E-value=1.7e+02 Score=31.03 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=21.3
Q ss_pred hhhccChhHHHHHHHHHHHHHHHHHHHHH
Q 003413 638 LKRKVAPEGFRELQQTVKTLEAEIEKMKK 666 (822)
Q Consensus 638 ~k~~~~ee~~~el~~~~k~le~ele~~~~ 666 (822)
.+.-.-.|.++++|++.++++++.+++++
T Consensus 65 ~~~liD~ekm~~~qk~m~efq~e~~eA~~ 93 (201)
T COG1422 65 QKLLIDQEKMKELQKMMKEFQKEFREAQE 93 (201)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456788888888888888887776
No 402
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=20.41 E-value=42 Score=34.54 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=11.9
Q ss_pred eeeeccCCCCccee
Q 003413 300 VFCYGATGAGKTYT 313 (822)
Q Consensus 300 IfAYGQTGSGKTyT 313 (822)
|+.+|..|||||+.
T Consensus 2 I~i~G~pGsGKsT~ 15 (210)
T TIGR01351 2 LVLLGPPGSGKGTQ 15 (210)
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999764
No 403
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=20.40 E-value=37 Score=35.15 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=14.4
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
+++-+|++|||||..+
T Consensus 24 ~~~i~G~NGsGKTTLl 39 (204)
T cd03240 24 LTLIVGQNGAGKTTII 39 (204)
T ss_pred eEEEECCCCCCHHHHH
Confidence 7789999999999876
No 404
>PRK14527 adenylate kinase; Provisional
Probab=20.40 E-value=44 Score=33.81 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=14.1
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
-.|+.+|.+|||||...
T Consensus 7 ~~i~i~G~pGsGKsT~a 23 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQA 23 (191)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46889999999998754
No 405
>PRK03839 putative kinase; Provisional
Probab=20.38 E-value=42 Score=33.50 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=12.2
Q ss_pred eeeeccCCCCccee
Q 003413 300 VFCYGATGAGKTYT 313 (822)
Q Consensus 300 IfAYGQTGSGKTyT 313 (822)
|+-.|..|||||+.
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999875
No 406
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=20.38 E-value=52 Score=39.95 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=17.7
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
|..++. +..++..|..|||||||+
T Consensus 154 ~~~al~--~~~~vitGgpGTGKTt~v 177 (586)
T TIGR01447 154 VALALK--SNFSLITGGPGTGKTTTV 177 (586)
T ss_pred HHHHhh--CCeEEEEcCCCCCHHHHH
Confidence 455555 345567899999999997
No 407
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.34 E-value=6.5e+02 Score=32.52 Aligned_cols=22 Identities=36% Similarity=0.348 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003413 567 LLELQKENRELRVQMARQQQRL 588 (822)
Q Consensus 567 i~eLq~Ei~~Lr~eL~~~q~~i 588 (822)
+..+..|+.+|+..-+.++.++
T Consensus 405 lE~k~sE~~eL~r~kE~Lsr~~ 426 (1243)
T KOG0971|consen 405 LEKKNSELEELRRQKERLSREL 426 (1243)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 408
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=20.33 E-value=32 Score=42.99 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=15.9
Q ss_pred CCceeeeeccCCCCcceee
Q 003413 296 RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 296 yN~tIfAYGQTGSGKTyTM 314 (822)
-.+-.+.+|+||||||++|
T Consensus 425 ~~g~~~I~G~tGsGKS~l~ 443 (789)
T PRK13853 425 DVGMTAIFGPIGRGKTTLM 443 (789)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3456789999999999987
No 409
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=20.33 E-value=76 Score=40.27 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=15.0
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
++++-+|+||+|||++.
T Consensus 597 ~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA 613 (852)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999975
No 410
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.30 E-value=63 Score=39.99 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=25.6
Q ss_pred EeccccCCCCchhHHhhhhHHHHHHHHHcCC-CceeeeeccCCCCcceee
Q 003413 266 TFDASFPDSTSQHEVYSRTTADLVEAVLQGR-NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 266 ~FD~VF~~~asQeeVF~~~v~pLV~svL~Gy-N~tIfAYGQTGSGKTyTM 314 (822)
+||.|++. +.+ ++-|...+-.|. ..+++-||+.|+|||.+.
T Consensus 13 tFddVIGQ----e~v----v~~L~~aI~~grl~HAyLF~GPpGvGKTTlA 54 (702)
T PRK14960 13 NFNELVGQ----NHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIA 54 (702)
T ss_pred CHHHhcCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 56777763 434 223333333443 457789999999999765
No 411
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=20.27 E-value=7.5e+02 Score=30.20 Aligned_cols=41 Identities=12% Similarity=0.301 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 003413 646 GFRELQQTVKTLEAEIEKMKKDHALQLKQKDDVIRELKRKS 686 (822)
Q Consensus 646 ~~~el~~~~k~le~ele~~~~~~~~ql~~k~~li~el~~~~ 686 (822)
.+.+.++++.+|+.-+.-+.++++...+++.+|++.+.+..
T Consensus 411 qlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le 451 (546)
T PF07888_consen 411 QLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLE 451 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888888888888887766677777755544443
No 412
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.26 E-value=1.6e+02 Score=32.52 Aligned_cols=136 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccccCCccccccCCccC
Q 003413 562 DQAKLLLELQKENRELRVQMARQQQRL------LALEAQALAANSPTPSSVSSLLTPPSTAHPNEKRKPRSSFLHGNCFT 635 (822)
Q Consensus 562 d~~~li~eLq~Ei~~Lr~eL~~~q~~i------~~le~q~~a~~~~~~s~~~~~~~~~~~~~~~e~~k~~~~~l~~~~~~ 635 (822)
+....+.+++.|++.|+.+|......| +.-+..++-..+....=+.......+-.....+.-....++.....-
T Consensus 70 ~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~i 149 (265)
T COG3883 70 ELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKI 149 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHH
Q ss_pred hhh------hhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhccccccc
Q 003413 636 PEL------KRKVAPEGFRELQQTVKTLEAEIEKMKKDHALQLKQKDDVIRELKRKSDKQLERGGTEG 697 (822)
Q Consensus 636 ~e~------k~~~~ee~~~el~~~~k~le~ele~~~~~~~~ql~~k~~li~el~~~~~~~~~~~~~~~ 697 (822)
++. .-+.....+.+..+++..+..+++.+...+..+..++..++-.+.+++.+....-+..+
T Consensus 150 le~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 150 LEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
No 413
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=20.01 E-value=76 Score=35.09 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=20.3
Q ss_pred HHHHHHHcCC---CceeeeeccCCCCcceee
Q 003413 287 DLVEAVLQGR---NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 287 pLV~svL~Gy---N~tIfAYGQTGSGKTyTM 314 (822)
+-++.++.|- ...+.-||.+|||||...
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~ 119 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQIC 119 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHH
Confidence 3446666642 556779999999999765
Done!