Query 003413
Match_columns 822
No_of_seqs 422 out of 2271
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 00:21:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vvg_A Kinesin-2; motor protei 100.0 2.4E-90 8.1E-95 756.4 31.4 341 210-553 3-345 (350)
2 3lre_A Kinesin-like protein KI 100.0 5.7E-90 1.9E-94 755.0 30.5 337 206-542 5-355 (355)
3 3cob_A Kinesin heavy chain-lik 100.0 1.6E-89 5.5E-94 754.3 32.7 330 208-552 2-336 (369)
4 2y65_A Kinesin, kinesin heavy 100.0 1.5E-89 5.1E-94 753.8 29.3 344 209-579 9-361 (365)
5 3b6u_A Kinesin-like protein KI 100.0 4.2E-89 1.4E-93 751.4 29.0 340 206-553 16-363 (372)
6 3bfn_A Kinesin-like protein KI 100.0 2.8E-89 9.7E-94 755.7 26.9 335 208-553 18-357 (388)
7 1x88_A Kinesin-like protein KI 100.0 8.9E-89 3.1E-93 746.5 26.9 336 207-551 4-358 (359)
8 1goj_A Kinesin, kinesin heavy 100.0 4E-88 1.4E-92 740.3 31.1 330 209-553 4-340 (355)
9 1bg2_A Kinesin; motor protein, 100.0 2.8E-88 9.7E-93 733.8 27.5 316 209-542 5-325 (325)
10 1t5c_A CENP-E protein, centrom 100.0 8.9E-88 3E-92 736.1 31.5 328 209-553 2-338 (349)
11 2owm_A Nckin3-434, related to 100.0 1.6E-87 5.5E-92 753.7 32.4 342 207-551 34-421 (443)
12 2wbe_C Bipolar kinesin KRP-130 100.0 5.5E-88 1.9E-92 743.4 28.1 334 208-552 20-370 (373)
13 2zfi_A Kinesin-like protein KI 100.0 1.7E-87 5.7E-92 738.2 31.1 330 210-547 3-359 (366)
14 2h58_A Kinesin-like protein KI 100.0 3.7E-86 1.3E-90 718.6 32.5 320 209-543 2-329 (330)
15 3gbj_A KIF13B protein; kinesin 100.0 4.6E-86 1.6E-90 723.9 31.4 330 211-542 1-350 (354)
16 4a14_A Kinesin, kinesin-like p 100.0 5E-86 1.7E-90 721.3 31.1 318 209-540 9-344 (344)
17 1ry6_A Internal kinesin; kines 100.0 3.7E-86 1.3E-90 725.8 29.3 328 212-547 1-336 (360)
18 2rep_A Kinesin-like protein KI 100.0 3.4E-86 1.2E-90 729.4 27.8 340 199-542 10-376 (376)
19 2heh_A KIF2C protein; kinesin, 100.0 1.9E-86 6.5E-91 732.9 25.8 327 209-545 49-385 (387)
20 3nwn_A Kinesin-like protein KI 100.0 3.1E-86 1.1E-90 726.1 26.4 327 208-542 21-359 (359)
21 3t0q_A AGR253WP; kinesin, alph 100.0 1.8E-85 6.1E-90 718.1 30.8 324 208-545 2-347 (349)
22 1v8k_A Kinesin-like protein KI 100.0 1E-85 3.6E-90 731.3 26.4 328 209-546 69-406 (410)
23 1f9v_A Kinesin-like protein KA 100.0 7.1E-85 2.4E-89 712.8 28.8 321 210-546 2-345 (347)
24 2nr8_A Kinesin-like protein KI 100.0 3.4E-85 1.2E-89 717.6 26.4 329 206-542 18-358 (358)
25 3u06_A Protein claret segregat 100.0 8.5E-85 2.9E-89 725.8 26.6 349 184-551 38-391 (412)
26 4etp_A Kinesin-like protein KA 100.0 1.5E-84 5E-89 722.8 25.0 343 183-546 37-401 (403)
27 3dc4_A Kinesin-like protein NO 100.0 1.4E-82 4.8E-87 693.7 27.9 310 208-546 19-339 (344)
28 4h1g_A Maltose binding protein 100.0 4.6E-77 1.6E-81 704.1 31.5 322 208-543 371-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 2.3E-29 8E-34 229.6 6.8 97 469-574 2-99 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 1.6E-27 5.4E-32 223.5 11.4 111 472-588 1-112 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 5.3E-26 1.8E-30 239.5 7.9 273 191-546 10-293 (298)
32 3ec2_A DNA replication protein 93.1 0.014 4.8E-07 56.2 -0.5 50 264-314 6-55 (180)
33 2w58_A DNAI, primosome compone 91.6 0.047 1.6E-06 53.2 1.1 50 264-314 21-71 (202)
34 2qgz_A Helicase loader, putati 90.0 0.082 2.8E-06 56.3 1.2 50 264-314 120-169 (308)
35 1jbk_A CLPB protein; beta barr 84.7 0.37 1.3E-05 44.9 2.2 30 285-314 31-60 (195)
36 2r62_A Cell division protease 83.9 0.49 1.7E-05 48.0 2.8 51 263-314 6-61 (268)
37 4b4t_M 26S protease regulatory 83.1 2.3 8E-05 47.7 8.1 77 263-339 176-274 (434)
38 3te6_A Regulatory protein SIR3 82.4 0.7 2.4E-05 49.8 3.4 22 293-314 41-62 (318)
39 2p65_A Hypothetical protein PF 81.9 0.45 1.5E-05 44.5 1.4 30 285-314 31-60 (187)
40 3t15_A Ribulose bisphosphate c 81.3 0.47 1.6E-05 49.8 1.5 37 278-314 13-53 (293)
41 2bjv_A PSP operon transcriptio 80.7 0.6 2E-05 47.5 2.0 45 264-314 2-46 (265)
42 1g8p_A Magnesium-chelatase 38 79.5 0.62 2.1E-05 48.8 1.7 45 262-314 18-62 (350)
43 3h4m_A Proteasome-activating n 79.3 0.52 1.8E-05 48.2 1.0 52 263-314 12-68 (285)
44 3cf0_A Transitional endoplasmi 78.6 0.65 2.2E-05 48.7 1.5 51 264-314 11-66 (301)
45 3bos_A Putative DNA replicatio 78.5 1.1 3.6E-05 43.8 2.9 44 265-314 25-69 (242)
46 3tnu_A Keratin, type I cytoske 78.1 18 0.00063 33.8 11.2 35 645-679 77-111 (131)
47 3oja_B Anopheles plasmodium-re 78.0 3.6 0.00012 46.9 7.5 29 566-594 457-485 (597)
48 1ixz_A ATP-dependent metallopr 77.7 0.46 1.6E-05 48.0 0.0 51 263-314 11-66 (254)
49 1l8q_A Chromosomal replication 77.6 0.81 2.8E-05 48.0 1.9 48 263-314 6-54 (324)
50 4b4t_K 26S protease regulatory 77.1 2.9 9.8E-05 46.9 6.2 76 264-339 168-265 (428)
51 2chg_A Replication factor C sm 74.8 1.3 4.4E-05 42.2 2.3 21 294-314 35-55 (226)
52 1d2n_A N-ethylmaleimide-sensit 73.9 1.8 6E-05 44.2 3.2 21 294-314 61-81 (272)
53 1qde_A EIF4A, translation init 73.6 1.3 4.5E-05 43.4 2.1 23 289-313 45-67 (224)
54 4b4t_I 26S protease regulatory 73.5 7.1 0.00024 44.0 8.2 76 264-339 178-275 (437)
55 3b9p_A CG5977-PA, isoform A; A 73.5 0.79 2.7E-05 47.2 0.5 52 263-314 16-71 (297)
56 1vec_A ATP-dependent RNA helic 72.9 1.4 4.6E-05 42.6 1.9 24 289-314 34-57 (206)
57 3tnu_B Keratin, type II cytosk 72.7 18 0.00062 33.7 9.6 36 644-679 74-109 (129)
58 1iy2_A ATP-dependent metallopr 72.5 0.72 2.5E-05 47.5 -0.1 51 263-314 35-90 (278)
59 4b4t_L 26S protease subunit RP 72.4 1.1 3.8E-05 50.4 1.3 51 264-314 177-232 (437)
60 2v1u_A Cell division control p 72.4 0.67 2.3E-05 48.8 -0.4 20 295-314 42-61 (387)
61 2gxq_A Heat resistant RNA depe 72.2 1.5 5.2E-05 42.2 2.1 24 289-314 32-55 (207)
62 3i00_A HIP-I, huntingtin-inter 71.1 33 0.0011 32.0 10.8 71 562-687 12-82 (120)
63 3d8b_A Fidgetin-like protein 1 70.8 0.85 2.9E-05 49.1 -0.0 51 264-314 80-134 (357)
64 2z4s_A Chromosomal replication 70.4 1.8 6.3E-05 48.1 2.6 48 263-314 100-147 (440)
65 4b4t_J 26S protease regulatory 70.2 2.9 9.9E-05 46.7 4.0 51 264-314 144-199 (405)
66 1fnn_A CDC6P, cell division co 70.1 2.3 7.7E-05 45.0 3.1 45 265-314 14-61 (389)
67 3uk6_A RUVB-like 2; hexameric 69.5 1.8 6.3E-05 45.7 2.2 46 264-314 40-87 (368)
68 3dkp_A Probable ATP-dependent 68.9 1.9 6.6E-05 43.0 2.1 23 289-313 60-82 (245)
69 3bor_A Human initiation factor 68.0 1.3 4.4E-05 44.4 0.6 25 288-314 60-84 (237)
70 1sxj_C Activator 1 40 kDa subu 67.7 2.3 8E-05 44.9 2.6 41 266-314 23-63 (340)
71 1xwi_A SKD1 protein; VPS4B, AA 67.6 1.2 4.2E-05 47.3 0.3 50 265-314 9-62 (322)
72 2pl3_A Probable ATP-dependent 66.6 2.3 7.9E-05 42.2 2.1 24 289-314 56-79 (236)
73 3syl_A Protein CBBX; photosynt 66.5 1.9 6.6E-05 44.4 1.6 20 295-314 65-84 (309)
74 1lv7_A FTSH; alpha/beta domain 66.4 1.1 3.7E-05 45.4 -0.4 47 263-314 7-62 (257)
75 1t6n_A Probable ATP-dependent 66.2 2.1 7.1E-05 41.9 1.7 24 289-314 45-68 (220)
76 3ly5_A ATP-dependent RNA helic 66.1 2 6.8E-05 44.0 1.6 25 288-314 84-108 (262)
77 1p9r_A General secretion pathw 66.0 2.2 7.4E-05 47.6 1.9 27 288-314 158-184 (418)
78 2x8a_A Nuclear valosin-contain 65.8 0.8 2.7E-05 47.7 -1.5 50 265-314 7-61 (274)
79 3b6e_A Interferon-induced heli 64.9 1.2 4E-05 43.0 -0.4 23 290-314 43-65 (216)
80 3jvv_A Twitching mobility prot 64.2 2.2 7.7E-05 46.4 1.6 26 289-314 115-140 (356)
81 2c9o_A RUVB-like 1; hexameric 64.1 3 0.0001 46.4 2.6 46 264-314 33-80 (456)
82 2qz4_A Paraplegin; AAA+, SPG7, 63.9 4.1 0.00014 40.7 3.4 19 296-314 38-56 (262)
83 3iuy_A Probable ATP-dependent 63.3 2.8 9.4E-05 41.4 1.9 24 289-314 51-74 (228)
84 1wrb_A DJVLGB; RNA helicase, D 63.2 2.8 9.7E-05 42.0 2.1 24 289-314 54-77 (253)
85 2qby_B CDC6 homolog 3, cell di 63.2 2.8 9.5E-05 44.3 2.1 37 277-314 25-62 (384)
86 2kjq_A DNAA-related protein; s 62.5 2 6.8E-05 40.6 0.7 17 298-314 37-53 (149)
87 3oja_B Anopheles plasmodium-re 62.4 5.5 0.00019 45.4 4.5 25 516-540 391-415 (597)
88 3vfd_A Spastin; ATPase, microt 62.3 1.9 6.4E-05 46.8 0.5 53 262-314 109-165 (389)
89 3fmo_B ATP-dependent RNA helic 61.3 2.9 0.0001 43.8 1.8 26 289-314 123-148 (300)
90 3fe2_A Probable ATP-dependent 61.2 3.1 0.00011 41.6 1.9 23 290-314 61-83 (242)
91 3eiq_A Eukaryotic initiation f 61.0 3.4 0.00012 43.9 2.3 25 288-314 70-94 (414)
92 2oxc_A Probable ATP-dependent 60.5 3.4 0.00012 41.0 2.1 22 290-313 56-77 (230)
93 3llm_A ATP-dependent RNA helic 60.5 2.9 9.8E-05 41.9 1.5 26 287-314 68-93 (235)
94 2qp9_X Vacuolar protein sortin 60.5 2.2 7.4E-05 46.0 0.6 51 264-314 47-101 (355)
95 3eie_A Vacuolar protein sortin 60.4 1.9 6.4E-05 45.6 0.1 51 264-314 14-68 (322)
96 1njg_A DNA polymerase III subu 60.2 3.7 0.00013 39.3 2.2 17 298-314 46-62 (250)
97 3co5_A Putative two-component 59.8 4.1 0.00014 37.7 2.4 26 288-314 19-44 (143)
98 3ber_A Probable ATP-dependent 59.6 3.6 0.00012 41.6 2.1 24 289-314 74-97 (249)
99 4etp_B Spindle POLE BODY-assoc 59.2 17 0.00057 39.4 7.1 247 206-524 54-310 (333)
100 1u0j_A DNA replication protein 59.1 4.6 0.00016 42.6 2.8 30 285-314 89-121 (267)
101 2qby_A CDC6 homolog 1, cell di 58.8 2 6.7E-05 45.1 -0.1 20 295-314 43-62 (386)
102 4b4t_H 26S protease regulatory 58.8 5.4 0.00018 45.3 3.5 76 264-339 205-302 (467)
103 3n70_A Transport activator; si 58.6 4.5 0.00015 37.4 2.4 21 294-314 21-41 (145)
104 1sxj_D Activator 1 41 kDa subu 58.3 2.9 0.0001 43.6 1.1 27 288-314 49-75 (353)
105 1ofh_A ATP-dependent HSL prote 57.9 4 0.00014 41.7 2.1 18 297-314 50-67 (310)
106 1q0u_A Bstdead; DEAD protein, 57.3 2.6 8.8E-05 41.4 0.5 24 289-314 35-58 (219)
107 3fht_A ATP-dependent RNA helic 56.9 4.2 0.00014 43.1 2.1 27 288-314 55-81 (412)
108 3pey_A ATP-dependent RNA helic 56.7 3.7 0.00013 43.0 1.7 26 289-314 36-61 (395)
109 2j0s_A ATP-dependent RNA helic 56.0 3.8 0.00013 43.7 1.6 24 289-314 68-91 (410)
110 3pfi_A Holliday junction ATP-d 55.9 5.3 0.00018 41.8 2.6 44 266-314 27-72 (338)
111 3hu3_A Transitional endoplasmi 55.5 3.9 0.00013 46.4 1.6 51 264-314 200-255 (489)
112 1iqp_A RFCS; clamp loader, ext 55.1 4.8 0.00016 41.3 2.1 21 294-314 43-63 (327)
113 2zan_A Vacuolar protein sortin 54.1 2.4 8.1E-05 47.3 -0.4 17 298-314 168-184 (444)
114 2z0m_A 337AA long hypothetical 53.5 4.6 0.00016 41.4 1.6 23 290-314 26-48 (337)
115 1gvn_B Zeta; postsegregational 53.5 8.6 0.00029 40.2 3.8 32 283-314 14-50 (287)
116 2eyu_A Twitching motility prot 53.5 3.6 0.00012 42.6 0.9 19 296-314 24-42 (261)
117 1hqc_A RUVB; extended AAA-ATPa 53.2 7.9 0.00027 40.0 3.4 45 265-314 9-55 (324)
118 1tue_A Replication protein E1; 53.1 3.6 0.00012 42.1 0.8 26 289-314 48-75 (212)
119 3h1t_A Type I site-specific re 52.7 5.2 0.00018 45.6 2.1 27 287-314 189-215 (590)
120 2r44_A Uncharacterized protein 52.6 3.7 0.00013 43.0 0.8 33 276-314 31-63 (331)
121 2oap_1 GSPE-2, type II secreti 52.3 5.5 0.00019 45.5 2.2 20 293-314 258-277 (511)
122 3pvs_A Replication-associated 52.2 5.9 0.0002 44.3 2.4 38 276-314 30-67 (447)
123 1s2m_A Putative ATP-dependent 52.1 5.2 0.00018 42.4 1.9 24 289-314 52-75 (400)
124 3fmp_B ATP-dependent RNA helic 52.1 5.8 0.0002 43.7 2.3 25 289-313 123-147 (479)
125 4fcw_A Chaperone protein CLPB; 51.9 3.8 0.00013 42.1 0.7 17 298-314 48-64 (311)
126 2fz4_A DNA repair protein RAD2 51.1 5 0.00017 40.6 1.4 23 290-314 103-125 (237)
127 2i4i_A ATP-dependent RNA helic 51.1 5.2 0.00018 42.6 1.7 23 290-314 47-69 (417)
128 1w5s_A Origin recognition comp 50.3 6.6 0.00023 41.8 2.3 25 290-314 40-69 (412)
129 3o0z_A RHO-associated protein 49.6 1.6E+02 0.0056 29.0 11.8 27 643-669 88-114 (168)
130 3u61_B DNA polymerase accessor 48.5 6.4 0.00022 41.0 1.8 18 297-314 48-65 (324)
131 2chq_A Replication factor C sm 47.3 4.6 0.00016 41.3 0.5 21 294-314 35-55 (319)
132 1qvr_A CLPB protein; coiled co 47.0 5.7 0.0002 47.8 1.3 41 266-314 168-208 (854)
133 1sxj_B Activator 1 37 kDa subu 46.7 8 0.00027 39.6 2.2 22 293-314 38-59 (323)
134 1xti_A Probable ATP-dependent 46.0 6.6 0.00023 41.3 1.5 25 288-314 38-62 (391)
135 3oiy_A Reverse gyrase helicase 46.0 7.9 0.00027 41.6 2.1 23 289-313 30-52 (414)
136 2ewv_A Twitching motility prot 45.5 4.5 0.00016 44.1 0.1 20 295-314 134-153 (372)
137 1in4_A RUVB, holliday junction 45.2 9.4 0.00032 40.5 2.5 17 298-314 52-68 (334)
138 1sxj_E Activator 1 40 kDa subu 44.8 6.1 0.00021 41.4 1.0 15 300-314 39-53 (354)
139 1n0w_A DNA repair protein RAD5 44.5 7.6 0.00026 38.1 1.5 29 286-314 10-41 (243)
140 3fho_A ATP-dependent RNA helic 44.5 7.9 0.00027 43.5 1.9 25 290-314 151-175 (508)
141 3pxg_A Negative regulator of g 44.2 8.8 0.0003 42.9 2.2 41 266-314 178-218 (468)
142 1jr3_A DNA polymerase III subu 44.0 12 0.00041 39.3 3.0 19 296-314 37-55 (373)
143 2dfs_A Myosin-5A; myosin-V, in 43.9 57 0.0019 40.7 9.4 39 322-360 406-445 (1080)
144 3i5x_A ATP-dependent RNA helic 43.9 8.9 0.00031 43.1 2.2 26 288-313 102-127 (563)
145 2ce7_A Cell division protein F 42.9 6 0.00021 44.8 0.6 47 263-314 11-66 (476)
146 4a2p_A RIG-I, retinoic acid in 42.8 9.4 0.00032 42.2 2.1 24 289-314 16-39 (556)
147 2p5t_B PEZT; postsegregational 42.7 13 0.00043 37.8 2.9 34 281-314 11-49 (253)
148 1rif_A DAR protein, DNA helica 42.5 5.5 0.00019 40.8 0.1 22 291-314 124-145 (282)
149 1go4_E MAD1 (mitotic arrest de 42.1 97 0.0033 28.1 8.2 30 566-595 13-42 (100)
150 4b3f_X DNA-binding protein smu 42.0 8.4 0.00029 44.8 1.6 26 288-314 197-222 (646)
151 1hv8_A Putative ATP-dependent 41.7 8.8 0.0003 39.7 1.6 24 290-314 38-61 (367)
152 2dfs_A Myosin-5A; myosin-V, in 41.5 1.3E+02 0.0045 37.5 12.1 16 569-584 957-972 (1080)
153 1ojl_A Transcriptional regulat 41.2 11 0.00039 39.5 2.4 20 295-314 23-42 (304)
154 2d7d_A Uvrabc system protein B 40.7 28 0.00097 40.7 5.8 86 264-354 4-96 (661)
155 1fuu_A Yeast initiation factor 40.7 6.4 0.00022 41.3 0.3 24 289-314 52-75 (394)
156 3tbk_A RIG-I helicase domain; 40.5 11 0.00037 41.6 2.1 24 289-314 13-36 (555)
157 2db3_A ATP-dependent RNA helic 39.6 13 0.00045 40.6 2.6 23 290-314 88-110 (434)
158 3upu_A ATP-dependent DNA helic 38.9 12 0.00043 41.4 2.3 36 274-314 27-62 (459)
159 2cvh_A DNA repair and recombin 38.8 11 0.00036 36.5 1.5 28 287-314 7-37 (220)
160 1e9r_A Conjugal transfer prote 38.8 7.6 0.00026 42.5 0.6 18 297-314 53-70 (437)
161 2dhr_A FTSH; AAA+ protein, hex 38.6 5.3 0.00018 45.6 -0.8 47 263-314 26-81 (499)
162 1w36_D RECD, exodeoxyribonucle 38.5 9.8 0.00034 44.1 1.5 18 297-314 164-181 (608)
163 1c4o_A DNA nucleotide excision 38.0 15 0.00052 43.1 2.9 46 265-316 2-47 (664)
164 1gk4_A Vimentin; intermediate 37.4 2E+02 0.0068 24.8 9.4 34 646-679 27-60 (84)
165 2w0m_A SSO2452; RECA, SSPF, un 37.0 9.5 0.00032 36.9 0.9 28 287-314 10-40 (235)
166 1rz3_A Hypothetical protein rb 36.7 15 0.00051 35.7 2.3 30 285-314 7-39 (201)
167 4gl2_A Interferon-induced heli 36.7 12 0.00043 43.1 2.0 24 289-314 16-39 (699)
168 2fwr_A DNA repair protein RAD2 36.6 11 0.00038 41.2 1.5 23 290-314 103-125 (472)
169 2v1x_A ATP-dependent DNA helic 36.4 18 0.00061 41.9 3.2 25 288-314 52-76 (591)
170 1um8_A ATP-dependent CLP prote 36.3 8.5 0.00029 41.2 0.4 18 297-314 72-89 (376)
171 2k48_A Nucleoprotein; viral pr 35.8 2.2E+02 0.0076 26.0 9.4 32 564-595 34-65 (107)
172 3cf2_A TER ATPase, transitiona 35.8 16 0.00054 44.2 2.7 74 264-337 200-295 (806)
173 4gp7_A Metallophosphoesterase; 35.7 8.2 0.00028 36.7 0.2 16 299-314 11-26 (171)
174 3sqw_A ATP-dependent RNA helic 35.6 14 0.00049 41.9 2.2 26 288-313 51-76 (579)
175 3lw7_A Adenylate kinase relate 35.5 10 0.00035 34.7 0.8 16 299-314 3-18 (179)
176 3hws_A ATP-dependent CLP prote 35.4 9 0.00031 40.9 0.4 18 297-314 51-68 (363)
177 4a74_A DNA repair and recombin 35.4 13 0.00043 36.1 1.5 28 287-314 12-42 (231)
178 3b85_A Phosphate starvation-in 35.1 13 0.00043 37.2 1.4 25 288-314 15-39 (208)
179 3c8u_A Fructokinase; YP_612366 34.9 13 0.00046 36.2 1.6 30 285-314 8-39 (208)
180 2dr3_A UPF0273 protein PH0284; 34.6 11 0.00039 36.8 1.0 26 289-314 12-40 (247)
181 1wp9_A ATP-dependent RNA helic 34.5 11 0.00038 40.0 1.0 23 289-314 18-40 (494)
182 3tau_A Guanylate kinase, GMP k 34.3 11 0.00036 37.1 0.7 17 298-314 9-25 (208)
183 2gk6_A Regulator of nonsense t 34.1 14 0.00047 43.0 1.7 18 298-315 196-213 (624)
184 4ag6_A VIRB4 ATPase, type IV s 34.0 9.1 0.00031 41.3 0.2 18 297-314 35-52 (392)
185 3ra3_B P2F; coiled coil domain 33.7 33 0.0011 23.6 2.8 25 567-591 2-26 (28)
186 1r6b_X CLPA protein; AAA+, N-t 33.5 14 0.00047 43.6 1.7 41 266-314 184-224 (758)
187 3lfu_A DNA helicase II; SF1 he 33.4 13 0.00043 42.6 1.2 21 295-315 20-40 (647)
188 3pxi_A Negative regulator of g 33.3 21 0.00073 42.2 3.2 41 266-314 178-218 (758)
189 2ykg_A Probable ATP-dependent 33.2 19 0.00063 41.6 2.6 23 290-314 23-45 (696)
190 3tr0_A Guanylate kinase, GMP k 32.9 9.8 0.00033 36.4 0.2 16 299-314 9-24 (205)
191 1sxj_A Activator 1 95 kDa subu 32.8 16 0.00055 41.2 2.0 18 297-314 77-94 (516)
192 3nmd_A CGMP dependent protein 32.6 1.2E+02 0.004 26.0 6.8 25 665-689 42-66 (72)
193 2gza_A Type IV secretion syste 32.6 16 0.00054 39.5 1.8 20 293-314 173-192 (361)
194 3b9q_A Chloroplast SRP recepto 32.4 20 0.00067 37.9 2.5 16 299-314 102-117 (302)
195 2qnr_A Septin-2, protein NEDD5 32.3 10 0.00034 40.0 0.1 24 291-314 12-35 (301)
196 3nbx_X ATPase RAVA; AAA+ ATPas 31.9 19 0.00066 40.9 2.5 26 287-314 33-58 (500)
197 2qen_A Walker-type ATPase; unk 31.5 18 0.0006 37.2 1.9 17 298-314 32-48 (350)
198 3a00_A Guanylate kinase, GMP k 31.5 11 0.00036 36.3 0.2 16 299-314 3-18 (186)
199 1kgd_A CASK, peripheral plasma 31.2 11 0.00036 36.1 0.1 16 299-314 7-22 (180)
200 3pxi_A Negative regulator of g 31.0 22 0.00076 42.0 2.8 16 299-314 523-538 (758)
201 3e70_C DPA, signal recognition 30.5 21 0.00072 38.3 2.4 17 298-314 130-146 (328)
202 3vkg_A Dynein heavy chain, cyt 30.5 1.5E+02 0.005 41.5 10.7 21 563-583 1932-1952(3245)
203 3na7_A HP0958; flagellar bioge 30.3 2.8E+02 0.0097 28.3 10.8 14 749-762 194-207 (256)
204 2qag_C Septin-7; cell cycle, c 30.2 10 0.00034 42.3 -0.3 23 292-314 26-48 (418)
205 1zp6_A Hypothetical protein AT 30.1 12 0.00039 35.6 0.2 17 298-314 10-26 (191)
206 3hnw_A Uncharacterized protein 30.0 1.9E+02 0.0065 27.4 8.6 28 566-593 69-96 (138)
207 1ly1_A Polynucleotide kinase; 30.0 14 0.00048 34.3 0.7 16 299-314 4-19 (181)
208 1r6b_X CLPA protein; AAA+, N-t 29.8 25 0.00086 41.4 3.1 17 298-314 489-505 (758)
209 2oca_A DAR protein, ATP-depend 29.2 14 0.00048 40.9 0.7 34 272-315 113-146 (510)
210 1lvg_A Guanylate kinase, GMP k 29.1 12 0.0004 36.6 0.0 16 299-314 6-21 (198)
211 1lkx_A Myosin IE heavy chain; 29.1 24 0.00082 42.0 2.6 21 294-314 91-111 (697)
212 1x8y_A Lamin A/C; structural p 28.8 1.1E+02 0.0037 26.7 6.2 34 646-679 29-62 (86)
213 1gm5_A RECG; helicase, replica 28.6 26 0.00089 42.1 2.9 27 288-314 380-406 (780)
214 1qhx_A CPT, protein (chloramph 28.5 15 0.00052 34.3 0.7 17 298-314 4-20 (178)
215 3mq9_A Bone marrow stromal ant 28.2 93 0.0032 34.3 7.1 23 575-597 400-422 (471)
216 2orw_A Thymidine kinase; TMTK, 28.1 11 0.00037 36.8 -0.4 17 299-315 5-21 (184)
217 3trf_A Shikimate kinase, SK; a 28.0 16 0.00054 34.5 0.7 15 299-313 7-21 (185)
218 1w9i_A Myosin II heavy chain; 27.6 26 0.0009 42.1 2.6 21 294-314 169-189 (770)
219 2b8t_A Thymidine kinase; deoxy 27.5 12 0.00041 38.1 -0.2 19 298-316 13-31 (223)
220 2j41_A Guanylate kinase; GMP, 27.4 14 0.00047 35.3 0.2 16 299-314 8-23 (207)
221 1ypw_A Transitional endoplasmi 27.3 19 0.00067 43.2 1.5 75 263-337 199-295 (806)
222 4a2q_A RIG-I, retinoic acid in 27.2 23 0.00079 42.0 2.1 24 289-314 257-280 (797)
223 2ehv_A Hypothetical protein PH 27.1 14 0.00049 36.2 0.3 16 299-314 32-47 (251)
224 2v26_A Myosin VI; calmodulin-b 27.1 27 0.00092 42.1 2.6 21 294-314 137-157 (784)
225 3iij_A Coilin-interacting nucl 27.0 16 0.00056 34.4 0.6 17 298-314 12-28 (180)
226 3sop_A Neuronal-specific septi 27.0 13 0.00046 38.5 0.0 19 296-314 1-19 (270)
227 4a2w_A RIG-I, retinoic acid in 26.9 21 0.00072 43.5 1.7 24 289-314 257-280 (936)
228 1ye8_A Protein THEP1, hypothet 26.9 14 0.00046 35.9 0.0 15 300-314 3-17 (178)
229 4fi5_A Nucleoprotein; structur 26.9 3.3E+02 0.011 25.2 9.1 29 566-594 23-51 (113)
230 1rj9_A FTSY, signal recognitio 26.8 16 0.00055 38.7 0.6 17 298-314 103-119 (304)
231 1qvr_A CLPB protein; coiled co 26.7 27 0.00091 42.0 2.5 17 298-314 589-605 (854)
232 1g8x_A Myosin II heavy chain f 26.6 27 0.00092 43.3 2.6 34 280-314 155-189 (1010)
233 2og2_A Putative signal recogni 26.6 29 0.001 37.8 2.6 16 299-314 159-174 (359)
234 3e1s_A Exodeoxyribonuclease V, 26.4 21 0.00072 41.2 1.5 24 289-314 198-221 (574)
235 2r8r_A Sensor protein; KDPD, P 26.2 13 0.00046 38.2 -0.2 18 298-315 7-24 (228)
236 2bdt_A BH3686; alpha-beta prot 26.1 15 0.00051 35.0 0.1 16 299-314 4-19 (189)
237 2ycu_A Non muscle myosin 2C, a 26.0 29 0.00099 42.9 2.7 21 294-314 143-163 (995)
238 3lnc_A Guanylate kinase, GMP k 26.0 17 0.00059 35.9 0.6 16 299-314 29-44 (231)
239 1odf_A YGR205W, hypothetical 3 26.0 24 0.00082 37.1 1.7 19 296-314 30-48 (290)
240 2wjy_A Regulator of nonsense t 26.0 23 0.00078 42.7 1.7 25 289-315 365-389 (800)
241 2fna_A Conserved hypothetical 25.9 22 0.00077 36.5 1.5 17 298-314 31-47 (357)
242 1uaa_A REP helicase, protein ( 25.8 19 0.00065 41.8 1.0 20 296-315 14-33 (673)
243 2xzl_A ATP-dependent helicase 25.5 22 0.00074 42.9 1.4 25 289-315 369-393 (802)
244 3lay_A Zinc resistance-associa 25.5 3.9E+02 0.013 26.3 10.2 24 646-669 114-137 (175)
245 3kta_A Chromosome segregation 25.4 16 0.00055 34.4 0.3 16 299-314 28-43 (182)
246 2pt7_A CAG-ALFA; ATPase, prote 25.4 16 0.00054 39.1 0.2 21 292-314 168-188 (330)
247 1w7j_A Myosin VA; motor protei 25.3 30 0.001 41.7 2.6 21 294-314 153-173 (795)
248 4db1_A Myosin-7; S1DC, cardiac 25.2 31 0.001 41.6 2.6 21 294-314 168-188 (783)
249 4dzn_A Coiled-coil peptide CC- 25.1 1.4E+02 0.0047 21.3 4.8 25 567-591 4-28 (33)
250 1znw_A Guanylate kinase, GMP k 24.9 16 0.00055 35.6 0.1 16 299-314 22-37 (207)
251 1oyw_A RECQ helicase, ATP-depe 24.8 15 0.00053 41.5 0.0 24 289-314 34-57 (523)
252 1kk8_A Myosin heavy chain, str 24.8 28 0.00095 42.3 2.2 21 294-314 166-186 (837)
253 1kht_A Adenylate kinase; phosp 24.8 19 0.00066 33.7 0.7 17 298-314 4-20 (192)
254 2yy0_A C-MYC-binding protein; 24.7 1.2E+02 0.0041 24.3 5.2 29 566-594 20-48 (53)
255 1kag_A SKI, shikimate kinase I 23.9 21 0.00071 33.2 0.7 16 299-314 6-21 (173)
256 3uie_A Adenylyl-sulfate kinase 23.9 23 0.00079 34.2 1.1 19 296-314 24-42 (200)
257 3vaa_A Shikimate kinase, SK; s 23.9 21 0.00073 34.4 0.8 16 299-314 27-42 (199)
258 1gku_B Reverse gyrase, TOP-RG; 23.8 33 0.0011 42.5 2.6 22 289-312 65-86 (1054)
259 2px0_A Flagellar biosynthesis 23.8 17 0.00059 38.2 0.1 17 298-314 106-122 (296)
260 3kb2_A SPBC2 prophage-derived 23.6 21 0.00074 32.7 0.7 16 299-314 3-18 (173)
261 4a4z_A Antiviral helicase SKI2 23.6 33 0.0011 42.2 2.6 23 289-313 48-70 (997)
262 1z6g_A Guanylate kinase; struc 23.5 17 0.00059 36.0 0.1 16 299-314 25-40 (218)
263 3u1c_A Tropomyosin alpha-1 cha 23.5 3.7E+02 0.013 23.9 8.9 27 643-669 42-68 (101)
264 2ze6_A Isopentenyl transferase 23.4 20 0.0007 36.4 0.6 15 299-313 3-17 (253)
265 2yhs_A FTSY, cell division pro 23.4 26 0.00088 40.2 1.5 16 299-314 295-310 (503)
266 4anj_A Unconventional myosin-V 23.2 35 0.0012 42.5 2.6 34 280-314 127-161 (1052)
267 2v66_B Nuclear distribution pr 23.0 4.4E+02 0.015 24.2 11.2 24 567-590 5-28 (111)
268 1ykh_B RNA polymerase II holoe 22.7 1.6E+02 0.0056 27.6 6.6 36 652-687 92-127 (132)
269 2i3b_A HCR-ntpase, human cance 22.4 19 0.00064 35.4 0.1 16 299-314 3-18 (189)
270 1moz_A ARL1, ADP-ribosylation 22.4 22 0.00076 32.8 0.6 27 288-314 8-35 (183)
271 1uf9_A TT1252 protein; P-loop, 22.2 27 0.00093 33.1 1.2 21 294-314 5-25 (203)
272 1knq_A Gluconate kinase; ALFA/ 22.1 20 0.00069 33.5 0.2 17 298-314 9-25 (175)
273 2rhm_A Putative kinase; P-loop 22.0 23 0.00078 33.4 0.6 17 298-314 6-22 (193)
274 1xx6_A Thymidine kinase; NESG, 21.9 17 0.00057 36.0 -0.4 18 299-316 10-27 (191)
275 1yke_B RNA polymerase II holoe 21.8 1.6E+02 0.0056 28.3 6.5 37 651-687 91-127 (151)
276 2qor_A Guanylate kinase; phosp 21.7 24 0.00082 34.2 0.7 16 299-314 14-29 (204)
277 1tev_A UMP-CMP kinase; ploop, 21.7 24 0.00081 33.1 0.6 16 299-314 5-20 (196)
278 3ghg_A Fibrinogen alpha chain; 21.6 3.1E+02 0.011 31.5 9.6 21 567-587 59-79 (562)
279 1j8m_F SRP54, signal recogniti 21.6 52 0.0018 34.6 3.3 16 299-314 100-115 (297)
280 1a5t_A Delta prime, HOLB; zinc 21.5 41 0.0014 35.4 2.5 34 277-314 7-41 (334)
281 1v5w_A DMC1, meiotic recombina 21.4 30 0.001 36.9 1.4 30 285-314 107-139 (343)
282 3t5d_A Septin-7; GTP-binding p 21.2 20 0.00069 36.6 0.0 21 294-314 5-25 (274)
283 2z83_A Helicase/nucleoside tri 21.2 27 0.00094 38.7 1.1 15 299-313 23-37 (459)
284 2v6i_A RNA helicase; membrane, 21.1 30 0.001 38.0 1.4 16 299-314 4-19 (431)
285 3cm0_A Adenylate kinase; ATP-b 20.9 27 0.00091 32.8 0.8 16 299-314 6-21 (186)
286 1f2t_A RAD50 ABC-ATPase; DNA d 20.8 23 0.00078 33.2 0.3 16 299-314 25-40 (149)
287 2xv5_A Lamin-A/C; structural p 20.8 1.9E+02 0.0066 24.6 6.1 34 646-679 6-39 (74)
288 2qag_A Septin-2, protein NEDD5 20.6 24 0.00083 38.0 0.5 24 291-314 31-54 (361)
289 1yks_A Genome polyprotein [con 20.6 26 0.0009 38.6 0.8 20 293-314 6-25 (440)
290 1ic2_A Tropomyosin alpha chain 20.5 3.9E+02 0.013 22.6 8.3 27 643-669 39-65 (81)
291 1nks_A Adenylate kinase; therm 20.5 26 0.00089 32.7 0.6 16 299-314 3-18 (194)
292 1ykh_B RNA polymerase II holoe 20.4 5.2E+02 0.018 24.1 9.6 101 470-587 11-114 (132)
293 3hnw_A Uncharacterized protein 20.4 5.4E+02 0.019 24.2 11.8 22 566-587 83-104 (138)
294 4emc_A Monopolin complex subun 20.3 5.1E+02 0.018 25.9 9.8 31 564-594 19-49 (190)
295 1e6c_A Shikimate kinase; phosp 20.2 26 0.0009 32.4 0.6 16 299-314 4-19 (173)
296 2xau_A PRE-mRNA-splicing facto 20.2 27 0.00093 41.7 0.9 15 299-313 111-125 (773)
297 3kl4_A SRP54, signal recogniti 20.1 59 0.002 36.4 3.5 17 298-314 98-114 (433)
298 1y63_A LMAJ004144AAA protein; 20.1 27 0.00091 33.3 0.6 16 299-314 12-27 (184)
299 2ic9_A Nucleocapsid protein; h 20.0 4.8E+02 0.016 23.5 9.1 29 566-594 6-34 (96)
300 3rc3_A ATP-dependent RNA helic 20.0 26 0.00089 41.4 0.6 44 293-338 153-202 (677)
No 1
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=2.4e-90 Score=756.43 Aligned_cols=341 Identities=43% Similarity=0.632 Sum_probs=279.5
Q ss_pred CCCeEEEEEcCCCCchhhhcCCceEEEEec-CceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHH
Q 003413 210 GSRILVFVRLRPMSKKEKESGSRCCVRIVN-KRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADL 288 (822)
Q Consensus 210 ~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~-~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pL 288 (822)
.++|+|+|||||++..|...+...||.+.+ ...|.+..+...... .......+.|+||+||+++++|++||+.++.|+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~-~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~pl 81 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSA-TQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPL 81 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC---------------EEEECSEEECTTCCHHHHHHHTTHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccc-cccCCCceEeeCCEEECCCcchhHHHHHHHHHH
Confidence 478999999999999999888888888764 345666544321111 111234689999999999999999999999999
Q ss_pred HHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCCCCCc
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGRPL 368 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p~~~L 368 (822)
|+++|+|||+||||||||||||||||+|+.+++|||||++++||+.+........|.|++||+|||||+|+|||++...+
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~l 161 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKL 161 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTEEEE
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccCCcCc
Confidence 99999999999999999999999999999999999999999999999877677899999999999999999999988889
Q ss_pred eEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEeeEEEe
Q 003413 369 VLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKLSLI 447 (822)
Q Consensus 369 ~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~SkL~LV 447 (822)
.+++++. |++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++.....+.. ....|+|+||
T Consensus 162 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~-~~~~skl~lV 240 (350)
T 2vvg_A 162 PLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKE-VIRVGKLNLV 240 (350)
T ss_dssp CEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----C-EEEEEEEEEE
T ss_pred eeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCc-cEEEEEEEEE
Confidence 9999875 8999999999999999999999999999999999999999999999999998876543222 3568999999
Q ss_pred ecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhccCCCceeeEEEeeCCCCCCHH
Q 003413 448 DLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFG 527 (822)
Q Consensus 448 DLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~~~~e 527 (822)
|||||||..++++.|.+++|+.+||+||++||+||.+|++++.||||||||||+||||+|||||+|+|||||||+..+++
T Consensus 241 DLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ 320 (350)
T 2vvg_A 241 DLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYD 320 (350)
T ss_dssp ECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHH
T ss_pred eCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccccccccc
Q 003413 528 ETQNTLHWADRAKEIRTKEGEANEET 553 (822)
Q Consensus 528 ETLsTLrFA~Rak~Iknk~~~~ne~~ 553 (822)
||++||+||+|||+|+|+|. +|+++
T Consensus 321 ETl~TL~fA~rak~i~n~~~-~n~~~ 345 (350)
T 2vvg_A 321 ETMSTLRYADRAKQIKNKPR-INEDP 345 (350)
T ss_dssp HHHHHHHHHHHHTTCBCCCC-CCBSC
T ss_pred HHHHHHHHHHHHhhccccce-ecCCc
Confidence 99999999999999999995 66654
No 2
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=5.7e-90 Score=755.02 Aligned_cols=337 Identities=47% Similarity=0.712 Sum_probs=271.8
Q ss_pred CCCCCCCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhh----------hcccCCeeeEeccccCCCC
Q 003413 206 HVPSGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLR----------LKRLRGRHFTFDASFPDST 275 (822)
Q Consensus 206 ~~~~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~----------~~~~~~k~F~FD~VF~~~a 275 (822)
..+..++|+|+|||||++..|...+..+||.+.++..+.+.+......... ....+.+.|.||+||++++
T Consensus 5 ~~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~ 84 (355)
T 3lre_A 5 EEDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETS 84 (355)
T ss_dssp -------CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTC
T ss_pred hhhccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCC
Confidence 345689999999999999999999999999988777665543221111100 0123467899999999999
Q ss_pred chhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEec
Q 003413 276 SQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYN 355 (822)
Q Consensus 276 sQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYN 355 (822)
+|++||+.++.|+|+++|+|||+||||||||||||||||+|+.+++|||||++++||..+........|.|.|||+||||
T Consensus 85 ~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYn 164 (355)
T 3lre_A 85 TQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYN 164 (355)
T ss_dssp CHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEET
T ss_pred ChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999988777778999999999999
Q ss_pred ceeeecCCCCCCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCC
Q 003413 356 ETVRDLLSPGRPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDAS 434 (822)
Q Consensus 356 E~V~DLL~p~~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~ 434 (822)
|+|+|||++..++.+++++. |++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++......
T Consensus 165 E~i~DLL~~~~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 244 (355)
T 3lre_A 165 EQIRDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTAS 244 (355)
T ss_dssp TEEEESSSCCCCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSC
T ss_pred CEEEECcCCCCCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCC
Confidence 99999999999999999975 89999999999999999999999999999999999999999999999999998876554
Q ss_pred CceeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCC---CCCCccCchhhhhhhhccCCCc
Q 003413 435 MNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGK---KHIPYRNSKLTQLLKDSLGGAC 511 (822)
Q Consensus 435 ~~~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~---~hIPYRdSKLTrLLqDSLGGns 511 (822)
.......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++++ .||||||||||+||||+|||||
T Consensus 245 ~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGns 324 (355)
T 3lre_A 245 INQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNC 324 (355)
T ss_dssp TTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTS
T ss_pred CCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCc
Confidence 4334567999999999999999999999999999999999999999999999754 5999999999999999999999
Q ss_pred eeeEEEeeCCCCCCHHHHHHHHHHHHHhhhh
Q 003413 512 NTVMIANISPCNLSFGETQNTLHWADRAKEI 542 (822)
Q Consensus 512 kT~mIa~ISPs~~~~eETLsTLrFA~Rak~I 542 (822)
+|+|||||||+..+++||++||+||+|||+|
T Consensus 325 kt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 325 QTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999987
No 3
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=1.6e-89 Score=754.25 Aligned_cols=330 Identities=35% Similarity=0.546 Sum_probs=297.0
Q ss_pred CCCCCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHH
Q 003413 208 PSGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTAD 287 (822)
Q Consensus 208 ~~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~p 287 (822)
+++++|+|+|||||++..|...+...++...+. +.+..+.. ....+.|.||+||+++++|++||+. +.|
T Consensus 2 e~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~--~~v~~~~~--------~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~ 70 (369)
T 3cob_A 2 DMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDE--FTVEHLWK--------DDKAKQHMYDRVFDGNATQDDVFED-TKY 70 (369)
T ss_dssp --CCBCEEEEEECCCCHHHHHTTCCBCEEECSS--SEEEEECT--------TSCEEEEECSEEECTTCCHHHHHHT-TTH
T ss_pred CCCCCeEEEEECCCCChhhccCCCcEEEEcCCc--EEEEecCC--------CCCceEEecCEEECCCCCcceehhh-hhh
Confidence 467999999999999999987776544433332 22222111 1235799999999999999999998 799
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCCC--
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPG-- 365 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p~-- 365 (822)
+|+++++|||+||||||||||||||||+|+.+++|||||++++||+.+........|.|++||+|||||+|+|||++.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 150 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQA 150 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSS
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCccc
Confidence 999999999999999999999999999999999999999999999999887766789999999999999999999874
Q ss_pred --CCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEe
Q 003413 366 --RPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVG 442 (822)
Q Consensus 366 --~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~S 442 (822)
..+.+++++. |++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++...... ....|
T Consensus 151 ~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~---~~~~s 227 (369)
T 3cob_A 151 KRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQ---AIARG 227 (369)
T ss_dssp CCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTC---CEEEE
T ss_pred CCcceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCCC---cEEEE
Confidence 4689999976 79999999999999999999999999999999999999999999999999988765432 35679
Q ss_pred eEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhccCCCceeeEEEeeCCC
Q 003413 443 KLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPC 522 (822)
Q Consensus 443 kL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs 522 (822)
+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++++.||||||||||+||||+|||||+|+|||||||+
T Consensus 228 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~ 307 (369)
T 3cob_A 228 KLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPA 307 (369)
T ss_dssp EEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCB
T ss_pred EEEEEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhhccccccccc
Q 003413 523 NLSFGETQNTLHWADRAKEIRTKEGEANEE 552 (822)
Q Consensus 523 ~~~~eETLsTLrFA~Rak~Iknk~~~~ne~ 552 (822)
..+++||++||+||+||++|+|+|. +|++
T Consensus 308 ~~~~~ETl~TLrfA~rak~i~~~~~-~n~~ 336 (369)
T 3cob_A 308 ESNLDETHNSLTYASRVRSIVNDPS-KNVS 336 (369)
T ss_dssp GGGHHHHHHHHHHHHHHHTCBCCCC-CCEE
T ss_pred cccHHHHHHHHHHHHHHhhcccCCc-ccCC
Confidence 9999999999999999999999995 5554
No 4
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=1.5e-89 Score=753.81 Aligned_cols=344 Identities=35% Similarity=0.540 Sum_probs=286.8
Q ss_pred CCCCeEEEEEcCCCCchhhhcCCceEEEEecC---ceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhH
Q 003413 209 SGSRILVFVRLRPMSKKEKESGSRCCVRIVNK---RDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTT 285 (822)
Q Consensus 209 ~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~---~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v 285 (822)
..++|+|+|||||++..|...+..++|.+.+. ..+. ..++.|+||+||+++++|++||+.++
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~---------------~~~~~f~FD~Vf~~~~~Q~~Vy~~~~ 73 (365)
T 2y65_A 9 AEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCIS---------------IAGKVYLFDKVFKPNASQEKVYNEAA 73 (365)
T ss_dssp CEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEE---------------ETTEEEECSEEECTTCCHHHHHHHHT
T ss_pred CCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEE---------------ECCEEEeCceEecCCCCHHHHHHHhh
Confidence 56899999999999999988888877766542 1221 13578999999999999999999999
Q ss_pred HHHHHHHHcCCCceeeeeccCCCCcceeecccCC---CCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecC
Q 003413 286 ADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIE---NPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLL 362 (822)
Q Consensus 286 ~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e---~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL 362 (822)
.|+|+++|+|||+||||||||||||||||+|... .+|||||++++||+.+.....+..|.|+|||+|||||+|+|||
T Consensus 74 ~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL 153 (365)
T 2y65_A 74 KSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLL 153 (365)
T ss_dssp HHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETT
T ss_pred hhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecc
Confidence 9999999999999999999999999999999754 4699999999999999887667789999999999999999999
Q ss_pred CCC-CCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeE
Q 003413 363 SPG-RPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINR 440 (822)
Q Consensus 363 ~p~-~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~ 440 (822)
++. ..+.+++++. |++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.+...... ...
T Consensus 154 ~~~~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~---~~~ 230 (365)
T 2y65_A 154 DVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQ---KKL 230 (365)
T ss_dssp CTTCCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTC---CEE
T ss_pred cCCcCCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCC---CEe
Confidence 975 4789999976 79999999999999999999999999999999999999999999999999988765432 346
Q ss_pred EeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcC-CCCCCccCchhhhhhhhccCCCceeeEEEee
Q 003413 441 VGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEG-KKHIPYRNSKLTQLLKDSLGGACNTVMIANI 519 (822)
Q Consensus 441 ~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~-~~hIPYRdSKLTrLLqDSLGGnskT~mIa~I 519 (822)
.|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+++ +.||||||||||+||||+|||||+|+||+||
T Consensus 231 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~i 310 (365)
T 2y65_A 231 SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICC 310 (365)
T ss_dssp EEEEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEE
T ss_pred EEEEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEe
Confidence 799999999999999999999999999999999999999999999987 4799999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhcccccccccccCCCCCchhHHHHHHHHHHHHHHHHH
Q 003413 520 SPCNLSFGETQNTLHWADRAKEIRTKEGEANEETLQVPDSGTDQAKLLLELQKENRELRV 579 (822)
Q Consensus 520 SPs~~~~eETLsTLrFA~Rak~Iknk~~~~ne~~~~~~~~~~d~~~li~eLq~Ei~~Lr~ 579 (822)
||+..+++||++||+||+|||+|+|+|. +|++.. ...++++|++|+++|+.
T Consensus 311 sP~~~~~~ETl~TL~fA~rak~I~n~~~-~n~~~~--------~~~~~~~~~~e~~~~~~ 361 (365)
T 2y65_A 311 SPASFNESETKSTLDFGRRAKTVKNVVC-VNEELT--------AEEWKRRYEKEKEKNAR 361 (365)
T ss_dssp CCBGGGHHHHHHHHHHHHHHTTCEEECC-CEEECC--------SHHHHHC----------
T ss_pred cCccCCHHHHHHHHHHHHHHhcccCcce-eCCCCC--------HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999995 566542 13566777777776654
No 5
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=4.2e-89 Score=751.43 Aligned_cols=340 Identities=43% Similarity=0.609 Sum_probs=289.0
Q ss_pred CCCCCCCeEEEEEcCCCCchhhhcCCceEEEEec-CceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhh
Q 003413 206 HVPSGSRILVFVRLRPMSKKEKESGSRCCVRIVN-KRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRT 284 (822)
Q Consensus 206 ~~~~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~-~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~ 284 (822)
.....++|+|+|||||++..|...+...||.+.. ...+.+..+... .....+.|+||+||+++++|++||+.+
T Consensus 16 ~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~------~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~ 89 (372)
T 3b6u_A 16 FQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGT------AHEMPKTFTFDAVYDWNAKQFELYDET 89 (372)
T ss_dssp -----CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCT------TTCCCEEEECSEEECTTCCHHHHHHHT
T ss_pred cCCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCC------CCCCceEEEcCeEeCCcCchHHHHHHH
Confidence 3446789999999999999999888888888764 455666543321 123468999999999999999999999
Q ss_pred HHHHHHHHHcCCCceeeeeccCCCCcceeecccC---CCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeec
Q 003413 285 TADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTI---ENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDL 361 (822)
Q Consensus 285 v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~---e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DL 361 (822)
+.|+|+++|+|||+||||||||||||||||+|.. +++|||||++++||..+.. .....|.|+|||+|||||+|+||
T Consensus 90 ~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~~v~vS~~EIYnE~i~DL 168 (372)
T 3b6u_A 90 FRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISR-SQNQQYLVRASYLEIYQEEIRDL 168 (372)
T ss_dssp HHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHT-CSSCEEEEEEEEEEEETTEEEET
T ss_pred HHHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhh-ccCCceEEEEEEEEEeCCEEEEC
Confidence 9999999999999999999999999999999965 4569999999999999976 34678999999999999999999
Q ss_pred CCCC--CCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCcee
Q 003413 362 LSPG--RPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNII 438 (822)
Q Consensus 362 L~p~--~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~ 438 (822)
|++. ..+.+++++. |++|.||+++.|.|++|++.+|..|.++|.+++|.||..|||||+||+|.|+...........
T Consensus 169 L~~~~~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~ 248 (372)
T 3b6u_A 169 LSKDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENH 248 (372)
T ss_dssp TSSCTTCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCC
T ss_pred CCCCCCCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcc
Confidence 9875 4689999975 899999999999999999999999999999999999999999999999999987644333334
Q ss_pred eEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCC-CCCCccCchhhhhhhhccCCCceeeEEE
Q 003413 439 NRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGK-KHIPYRNSKLTQLLKDSLGGACNTVMIA 517 (822)
Q Consensus 439 ~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~-~hIPYRdSKLTrLLqDSLGGnskT~mIa 517 (822)
...|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++++ .||||||||||+||||+|||||+|+|||
T Consensus 249 ~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa 328 (372)
T 3b6u_A 249 IRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVA 328 (372)
T ss_dssp EEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEE
T ss_pred eEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEE
Confidence 578999999999999999999999999999999999999999999999876 6999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHHHhhhhhcccccccccc
Q 003413 518 NISPCNLSFGETQNTLHWADRAKEIRTKEGEANEET 553 (822)
Q Consensus 518 ~ISPs~~~~eETLsTLrFA~Rak~Iknk~~~~ne~~ 553 (822)
||||+..+++||++||+||+|||+|+|+|. +|+++
T Consensus 329 ~vsP~~~~~~ETlsTLrfA~rak~I~n~~~-~n~~~ 363 (372)
T 3b6u_A 329 NVGPASYNVEETLTTLRYANRAKNIKNKPR-VNEDP 363 (372)
T ss_dssp EECCBGGGHHHHHHHHHHHHHHTTCBCCCC-CCC--
T ss_pred EeCCcccCHHHHHHHHHHHHHHhhccccce-ecCCh
Confidence 999999999999999999999999999995 66654
No 6
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-89 Score=755.66 Aligned_cols=335 Identities=39% Similarity=0.586 Sum_probs=255.3
Q ss_pred CCCCCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHH
Q 003413 208 PSGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTAD 287 (822)
Q Consensus 208 ~~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~p 287 (822)
...++|+|+|||||++..|...+...||...+..++.+..... ....+.|+||+||+++++|++||+.++.|
T Consensus 18 ~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~--------~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~p 89 (388)
T 3bfn_A 18 GPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRN--------HQETLKYQFDAFYGERSTQQDIYAGSVQP 89 (388)
T ss_dssp SCCCCCEEEEEECCCC-------------------------------------CEEEEECSEEECTTCCHHHHHHHHTGG
T ss_pred CCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCC--------CCCeeEEEcceEecCCCCHhHHHHHHHHH
Confidence 4578999999999999999877767777766655554433211 12357899999999999999999999999
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhc---CCCCcEEEEEEEEEEecceeeecCCC
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQR---SCDGNHVVHLSYLEVYNETVRDLLSP 364 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~---~~~~~~~V~vS~lEIYNE~V~DLL~p 364 (822)
+|+++|+|||+||||||||||||||||+|+.+++|||||++++||+.+... .....|.|+|||+|||||+|+|||++
T Consensus 90 lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~ 169 (388)
T 3bfn_A 90 ILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDP 169 (388)
T ss_dssp GHHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSC
T ss_pred HHHHhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhcc
Confidence 999999999999999999999999999999999999999999999998763 23457899999999999999999998
Q ss_pred C-CCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEe
Q 003413 365 G-RPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVG 442 (822)
Q Consensus 365 ~-~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~S 442 (822)
. ..+.+++++. |++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++....... ....|
T Consensus 170 ~~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~--~~~~s 247 (388)
T 3bfn_A 170 ASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPF--RQREG 247 (388)
T ss_dssp SSCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTC--CEEEE
T ss_pred CCCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCC--ceeEE
Confidence 6 4799999976 799999999999999999999999999999999999999999999999999887654332 24679
Q ss_pred eEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhccCCCceeeEEEeeCCC
Q 003413 443 KLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPC 522 (822)
Q Consensus 443 kL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs 522 (822)
+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++++.||||||||||+||||+|||||+|+|||||||+
T Consensus 248 kL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~ 327 (388)
T 3bfn_A 248 KLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPE 327 (388)
T ss_dssp EEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCS
T ss_pred EEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEECCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhhcccccccccc
Q 003413 523 NLSFGETQNTLHWADRAKEIRTKEGEANEET 553 (822)
Q Consensus 523 ~~~~eETLsTLrFA~Rak~Iknk~~~~ne~~ 553 (822)
..+++||++||+||+|||+|+|+|. +|++.
T Consensus 328 ~~~~~ETlsTLrfA~rak~I~n~p~-~n~~~ 357 (388)
T 3bfn_A 328 RRFYLDTVSALNFAARSKEVINRPF-TNESL 357 (388)
T ss_dssp GGGHHHHHHHHHHHCSEEEEC----------
T ss_pred cccHHHHHHHHHHHHHHhhCcCcCc-ccCCC
Confidence 9999999999999999999999995 66654
No 7
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=8.9e-89 Score=746.55 Aligned_cols=336 Identities=37% Similarity=0.577 Sum_probs=281.8
Q ss_pred CCCCCCeEEEEEcCCCCchhhhcCCceEEEEecC-ceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhH
Q 003413 207 VPSGSRILVFVRLRPMSKKEKESGSRCCVRIVNK-RDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTT 285 (822)
Q Consensus 207 ~~~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~-~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v 285 (822)
.+.+++|+|+|||||++..|...+..++|.+.+. ..+.+...... .....+.|+||+||+++++|++||+.++
T Consensus 4 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~------~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~ 77 (359)
T 1x88_A 4 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLA------DKSSRKTYTFDMVFGASTKQIDVYRSVV 77 (359)
T ss_dssp -----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEET------TEEEEEEEECSEEECTTCCHHHHHHHHH
T ss_pred CCCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCcc------CCcCceEEeceEEEeccCchhHHHHHHH
Confidence 4567899999999999999998888888877653 34444321100 1123579999999999999999999999
Q ss_pred HHHHHHHHcCCCceeeeeccCCCCcceeecccCC-----------CCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEe
Q 003413 286 ADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIE-----------NPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVY 354 (822)
Q Consensus 286 ~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e-----------~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIY 354 (822)
.|+|+++|+|||+||||||||||||||||+|+.. .+|||||++++||+.+.. ....|.|+|||+|||
T Consensus 78 ~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~--~~~~~~v~vS~~EIY 155 (359)
T 1x88_A 78 CPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD--NGTEFSVKVSLLEIY 155 (359)
T ss_dssp HHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS--SSEEEEEEEEEEEEE
T ss_pred HHhHHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc--cCceEEEEEEEEEEe
Confidence 9999999999999999999999999999999753 369999999999999865 356899999999999
Q ss_pred cceeeecCCCC----CCceEeeCC---CCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEE
Q 003413 355 NETVRDLLSPG----RPLVLREDK---QGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIE 427 (822)
Q Consensus 355 NE~V~DLL~p~----~~L~ired~---~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~ 427 (822)
||+|+|||++. ..+.+++++ .|++|.||+++.|.|++|++.+|..|.++|.+++|.||..|||||+||+|.|+
T Consensus 156 nE~i~DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~ 235 (359)
T 1x88_A 156 NEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 235 (359)
T ss_dssp TTEEEETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEE
T ss_pred CceeeehhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEE
Confidence 99999999875 358899886 48999999999999999999999999999999999999999999999999998
Q ss_pred EEeecCCCceeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhcc
Q 003413 428 YRVKDASMNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSL 507 (822)
Q Consensus 428 ~~~~~~~~~~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDSL 507 (822)
.......+......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+++..||||||||||+||||+|
T Consensus 236 ~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsL 315 (359)
T 1x88_A 236 MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSL 315 (359)
T ss_dssp EEEECTTSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGS
T ss_pred EecccCCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHh
Confidence 87655444445678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhhcccccccc
Q 003413 508 GGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKEGEANE 551 (822)
Q Consensus 508 GGnskT~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk~~~~ne 551 (822)
||||+|+|||||||+..+++||++||+||+|||+|+|+|. +|+
T Consensus 316 gGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~-vn~ 358 (359)
T 1x88_A 316 GGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPE-VNQ 358 (359)
T ss_dssp SSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC----
T ss_pred CCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcce-eCC
Confidence 9999999999999999999999999999999999999995 443
No 8
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=4e-88 Score=740.27 Aligned_cols=330 Identities=38% Similarity=0.590 Sum_probs=303.5
Q ss_pred CCCCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHH
Q 003413 209 SGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADL 288 (822)
Q Consensus 209 ~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pL 288 (822)
..++|+|+|||||++..|...+..+||.+.+...+.+.. ....+.|.||+||+++++|++||+.++.|+
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~-----------~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~pl 72 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDS-----------KEAQGSFTFDRVFDMSCKQSDIFDFSIKPT 72 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECS-----------TTCCEEEECSEEECTTCCHHHHHHHHTHHH
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEcc-----------CCCccEEeeCeEECCCCccHHHHHHHHHHH
Confidence 368999999999999999988888899888776654421 123579999999999999999999999999
Q ss_pred HHHHHcCCCceeeeeccCCCCcceeeccc----CCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCC
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTMLGT----IENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSP 364 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM~G~----~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p 364 (822)
|+++|+|||+||||||||||||||||+|+ .+++|||||++++||+.+........|.|+|||+|||||+|+|||++
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 152 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAP 152 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTST
T ss_pred HHHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccC
Confidence 99999999999999999999999999996 35689999999999999987766778999999999999999999998
Q ss_pred C-CCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEe
Q 003413 365 G-RPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVG 442 (822)
Q Consensus 365 ~-~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~S 442 (822)
. ..+.+++++. |++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++.....+ ....|
T Consensus 153 ~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~---~~~~s 229 (355)
T 1goj_A 153 QNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETG---SAKSG 229 (355)
T ss_dssp TCCSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTT---EEEEE
T ss_pred ccCCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCC---ceeee
Confidence 6 4689999865 89999999999999999999999999999999999999999999999999998765442 35679
Q ss_pred eEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCC-CCCCccCchhhhhhhhccCCCceeeEEEeeCC
Q 003413 443 KLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGK-KHIPYRNSKLTQLLKDSLGGACNTVMIANISP 521 (822)
Q Consensus 443 kL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~-~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISP 521 (822)
+|+|||||||||..+++..|.+++|+.+||+||++||+||.+|++++ .||||||||||+||||+|||||+|+|||||||
T Consensus 230 kL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP 309 (355)
T 1goj_A 230 QLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSP 309 (355)
T ss_dssp EEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECC
T ss_pred EEEEEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECc
Confidence 99999999999999999999999999999999999999999999874 79999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhcccccccccc
Q 003413 522 CNLSFGETQNTLHWADRAKEIRTKEGEANEET 553 (822)
Q Consensus 522 s~~~~eETLsTLrFA~Rak~Iknk~~~~ne~~ 553 (822)
+..+++||++||+||+|||+|+|+|. +|++.
T Consensus 310 ~~~~~~ETl~TL~fA~rak~I~n~~~-vn~~~ 340 (355)
T 1goj_A 310 SSYNDAETLSTLRFGMRAKSIKNKAK-VNAEL 340 (355)
T ss_dssp BGGGHHHHHHHHHHHHHHHTCBCCCC-CCSSS
T ss_pred ccccHHHHHHHHHHHHHHhhccCCce-eCCCC
Confidence 99999999999999999999999995 56554
No 9
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=2.8e-88 Score=733.83 Aligned_cols=316 Identities=37% Similarity=0.577 Sum_probs=294.8
Q ss_pred CCCCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHH
Q 003413 209 SGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADL 288 (822)
Q Consensus 209 ~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pL 288 (822)
.+++|+|+|||||+++.|...+...++.+.+..++.+ ..+.|.||+||+++++|++||+.++.|+
T Consensus 5 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~---------------~~~~f~FD~Vf~~~~sQ~~Vy~~~~~pl 69 (325)
T 1bg2_A 5 AECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI---------------ASKPYAFDRVFQSSTSQEQVYNDCAKKI 69 (325)
T ss_dssp SSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEE---------------TTEEEECSEEECTTCCHHHHHHHHTHHH
T ss_pred CCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEE---------------CCEEEECCeEeCCCCCHHHHHHHHhhhh
Confidence 4789999999999999999888888888877666543 2478999999999999999999999999
Q ss_pred HHHHHcCCCceeeeeccCCCCcceeecccCCC---CchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCCC
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTMLGTIEN---PGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPG 365 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~---~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p~ 365 (822)
|+++++|||+||||||||||||||||+|+..+ +|||||++++||+.+.....+..|.|+|||+|||||+|+|||++.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~ 149 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVS 149 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTT
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCC
Confidence 99999999999999999999999999997544 599999999999999877667899999999999999999999975
Q ss_pred -CCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEee
Q 003413 366 -RPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGK 443 (822)
Q Consensus 366 -~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~Sk 443 (822)
..+.+++++. |++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++...... ....|+
T Consensus 150 ~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~---~~~~sk 226 (325)
T 1bg2_A 150 KTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTE---QKLSGK 226 (325)
T ss_dssp CCSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTC---CEEEEE
T ss_pred CCCceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCC---cEEEEE
Confidence 5789999976 79999999999999999999999999999999999999999999999999988765432 346799
Q ss_pred EEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhccCCCceeeEEEeeCCCC
Q 003413 444 LSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCN 523 (822)
Q Consensus 444 L~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~ 523 (822)
|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+++..||||||||||+||||+|||||+|+|||||||+.
T Consensus 227 l~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~ 306 (325)
T 1bg2_A 227 LYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSS 306 (325)
T ss_dssp EEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBG
T ss_pred EEEEECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q 003413 524 LSFGETQNTLHWADRAKEI 542 (822)
Q Consensus 524 ~~~eETLsTLrFA~Rak~I 542 (822)
.+++||++||+||+|||+|
T Consensus 307 ~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 307 YNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp GGHHHHHHHHHHHHTSCCC
T ss_pred ccHHHHHHHHHHHHHhccC
Confidence 9999999999999999986
No 10
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=8.9e-88 Score=736.07 Aligned_cols=328 Identities=38% Similarity=0.633 Sum_probs=286.3
Q ss_pred CCCCeEEEEEcCCCCchhhhcCCceEEEEec-CceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHH
Q 003413 209 SGSRILVFVRLRPMSKKEKESGSRCCVRIVN-KRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTAD 287 (822)
Q Consensus 209 ~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~-~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~p 287 (822)
..++|+|+|||||++..|...+..+++.+.. +..+.. ....+.|.||+||+++++|++||+.++.|
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~-------------~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~p 68 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQ-------------VDGSKSFNFDRVFHGNETTKNVYEEIAAP 68 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEE-------------TTSSCEEECSCEECTTSCHHHHHHHTTHH
T ss_pred CCCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEE-------------CCCCeEEECCEEECCCCCHHHHHHHHHHH
Confidence 3689999999999999998777766554442 222211 01357899999999999999999999999
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCCC--
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPG-- 365 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p~-- 365 (822)
+|+++|+|||+||||||||||||||||+|+.+++|||||++++||+.+.... +..|.|+|||+|||||+|+|||++.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~-~~~~~v~vS~~EIYnE~i~DLL~~~~~ 147 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFP-DREFLLRVSYMEIYNETITDLLCGTQK 147 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCT-TEEEEEEEEEEEEETTEEEESSSSSCT
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCc-CCcEEEEEEEEEEeCCEEEEccCCCCC
Confidence 9999999999999999999999999999999999999999999999997653 5689999999999999999999865
Q ss_pred -CCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCC--ceeeEE
Q 003413 366 -RPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASM--NIINRV 441 (822)
Q Consensus 366 -~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~--~~~~~~ 441 (822)
.++.+++++. |++|.||+++.|.|++|++.+|..|.++|.+++|.||..|||||+||+|.|++....... ......
T Consensus 148 ~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~ 227 (349)
T 1t5c_A 148 MKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKV 227 (349)
T ss_dssp TCCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEE
T ss_pred CCCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEE
Confidence 4789999976 799999999999999999999999999999999999999999999999999987654321 123567
Q ss_pred eeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCC--CCCCccCchhhhhhhhccCCCceeeEEEee
Q 003413 442 GKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGK--KHIPYRNSKLTQLLKDSLGGACNTVMIANI 519 (822)
Q Consensus 442 SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~--~hIPYRdSKLTrLLqDSLGGnskT~mIa~I 519 (822)
|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++++ .||||||||||+||||+|||||+|+|||||
T Consensus 228 skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~i 307 (349)
T 1t5c_A 228 SHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTI 307 (349)
T ss_dssp EEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEE
T ss_pred EEEEEEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEe
Confidence 999999999999999999999999999999999999999999999875 599999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhcccccccccc
Q 003413 520 SPCNLSFGETQNTLHWADRAKEIRTKEGEANEET 553 (822)
Q Consensus 520 SPs~~~~eETLsTLrFA~Rak~Iknk~~~~ne~~ 553 (822)
||+ +++||++||+||+|||+|+|+|. +|++.
T Consensus 308 sP~--~~~ETlsTL~fA~rak~I~n~~~-vn~~~ 338 (349)
T 1t5c_A 308 TPV--SFDETLTALQFASTAKYMKNTPY-VNEVS 338 (349)
T ss_dssp CTT--CSHHHHHHHHHHHHHTTCCCCCC-CCEEC
T ss_pred CCC--CHHHHHHHHHHHHHHhhcccCce-eccCC
Confidence 997 58999999999999999999995 66655
No 11
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=1.6e-87 Score=753.68 Aligned_cols=342 Identities=38% Similarity=0.574 Sum_probs=279.8
Q ss_pred CCCCCCeEEEEEcCCCCchhhhcCCceEEEEecCc-eeEEeeccCcchh-h----hhcccCCeeeEeccccCC-------
Q 003413 207 VPSGSRILVFVRLRPMSKKEKESGSRCCVRIVNKR-DVYLTEFANEHDY-L----RLKRLRGRHFTFDASFPD------- 273 (822)
Q Consensus 207 ~~~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~-~v~l~~~~~~~~~-~----~~~~~~~k~F~FD~VF~~------- 273 (822)
.+.+++|+|+|||||+++.|...+..|+|.+.... .+.+..+...... . .......+.|+||+||++
T Consensus 34 ~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~ 113 (443)
T 2owm_A 34 KDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEH 113 (443)
T ss_dssp CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTT
T ss_pred CCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCcc
Confidence 34678999999999999999988888888776532 3333322211000 0 001134689999999975
Q ss_pred CCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhc---CCCCcEEEEEEE
Q 003413 274 STSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQR---SCDGNHVVHLSY 350 (822)
Q Consensus 274 ~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~---~~~~~~~V~vS~ 350 (822)
.++|++||+.++.|+|+++|+|||+||||||||||||||||+|+.+++|||||++++||+.|... ..+..|.|+|||
T Consensus 114 ~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~ 193 (443)
T 2owm_A 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSY 193 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEE
T ss_pred CCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999764 235689999999
Q ss_pred EEEecceeeecCCCC------CCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEE
Q 003413 351 LEVYNETVRDLLSPG------RPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQ 423 (822)
Q Consensus 351 lEIYNE~V~DLL~p~------~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~Ift 423 (822)
+|||||+|+|||++. ..|.+++++. |++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+
T Consensus 194 lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ift 273 (443)
T 2owm_A 194 FEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFT 273 (443)
T ss_dssp EEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEE
T ss_pred EEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEE
Confidence 999999999999873 2489999975 899999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeecCC-CceeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCC-------------
Q 003413 424 VIIEYRVKDAS-MNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGK------------- 489 (822)
Q Consensus 424 I~V~~~~~~~~-~~~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~------------- 489 (822)
|.|++...+.. .......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++++
T Consensus 274 i~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g 353 (443)
T 2owm_A 274 IMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSG 353 (443)
T ss_dssp EEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC---------------
T ss_pred EEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccccccc
Confidence 99987644321 1223567999999999999999999999999999999999999999999998743
Q ss_pred ---------CCCCccCchhhhhhhhccCCCceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhhcccccccc
Q 003413 490 ---------KHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKEGEANE 551 (822)
Q Consensus 490 ---------~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk~~~~ne 551 (822)
.||||||||||+||||+|||||+|+|||||||+ +++||++||+||+|||+|+|+|. +|+
T Consensus 354 ~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~-vN~ 421 (443)
T 2owm_A 354 RGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAV-VNQ 421 (443)
T ss_dssp ----------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCC-CCC
T ss_pred cccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccce-ecc
Confidence 389999999999999999999999999999997 59999999999999999999996 454
No 12
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=5.5e-88 Score=743.43 Aligned_cols=334 Identities=39% Similarity=0.601 Sum_probs=283.2
Q ss_pred CCCCCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHH
Q 003413 208 PSGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTAD 287 (822)
Q Consensus 208 ~~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~p 287 (822)
...++|+|+|||||++..|...+...+|.+.+...+.+.... .....+.|+||+||+++++|++||+.++.|
T Consensus 20 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~--------~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~p 91 (373)
T 2wbe_C 20 KSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTL--------DSKLTKKFTFDRSFGPESKQCDVYSVVVSP 91 (373)
T ss_dssp CCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSS--------SSTTCEEEECSEEECTTCCHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCC--------CCCCceEEeccEEeccccchhHHHHHHHHH
Confidence 356899999999999999988888888988877776654321 113468999999999999999999999999
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceeecccCC-----------CCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecc
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTMLGTIE-----------NPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNE 356 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e-----------~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE 356 (822)
+|+++|+|||+||||||||||||||||+|+.. ++|||||++++||+.+... +..|.|+|||+|||||
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~--~~~~~v~vS~~EIYnE 169 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM--EVEYTMRISYLELYNE 169 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC--CSCEEEEEEEEEEETT
T ss_pred HHHHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc--CceEEEEEEEEEEeCC
Confidence 99999999999999999999999999999754 6799999999999998764 4689999999999999
Q ss_pred eeeecCCCCC--CceEeeCC---CCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEee
Q 003413 357 TVRDLLSPGR--PLVLREDK---QGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVK 431 (822)
Q Consensus 357 ~V~DLL~p~~--~L~ired~---~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~ 431 (822)
+|+|||++.. .+.++++. ++++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|+....
T Consensus 170 ~i~DLL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 249 (373)
T 2wbe_C 170 ELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIREN 249 (373)
T ss_dssp EEEESSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTT
T ss_pred eEEECCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecC
Confidence 9999998764 56777763 369999999999999999999999999999999999999999999999999987654
Q ss_pred cCCCceeeEEeeEEEeecCCCcccccccch-hhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhccCCC
Q 003413 432 DASMNIINRVGKLSLIDLAGSERALATDQR-TLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGA 510 (822)
Q Consensus 432 ~~~~~~~~~~SkL~LVDLAGSER~~kt~~~-g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDSLGGn 510 (822)
..........|+|+|||||||||..+++.. |.|++|+.+||+||++||+||.+|+++..||||||||||+||||+||||
T Consensus 250 ~~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGn 329 (373)
T 2wbe_C 250 GIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGR 329 (373)
T ss_dssp CTTTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSS
T ss_pred CCCCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCC
Confidence 333333457899999999999999999887 9999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhhccccccccc
Q 003413 511 CNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKEGEANEE 552 (822)
Q Consensus 511 skT~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk~~~~ne~ 552 (822)
|+|+|||||||+..+++||++||+||+|||+|+|+|. +|++
T Consensus 330 skt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~-vN~~ 370 (373)
T 2wbe_C 330 TKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPE-VNQK 370 (373)
T ss_dssp SEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCC-CCEE
T ss_pred ceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccce-eccc
Confidence 9999999999999999999999999999999999995 5554
No 13
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=1.7e-87 Score=738.19 Aligned_cols=330 Identities=39% Similarity=0.635 Sum_probs=282.4
Q ss_pred CCCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCC--------CchhHHh
Q 003413 210 GSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDS--------TSQHEVY 281 (822)
Q Consensus 210 ~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~--------asQeeVF 281 (822)
.++|+|+|||||++..|...+..++|.+.+...+ +..+... ....+.|+||+||++. ++|++||
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~-i~~~~~~-------~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy 74 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTT-IVNPKQP-------KETPKSFSFDYSYWSHTSPEDINYASQKQVY 74 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEE-ECCTTCT-------TSCCEEEECSEEEECSSCTTSSSCCCHHHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEE-EeccCCC-------CCCceEEecceEeecCccccccccCcHHHHH
Confidence 4689999999999999988888888887765443 3322211 1346899999999887 8999999
Q ss_pred hhhHHHHHHHHHcCCCceeeeeccCCCCcceeecccC--CCCchHHHHHHHHHHhhhhcC-CCCcEEEEEEEEEEeccee
Q 003413 282 SRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTI--ENPGVMVLAIKDLFTKIRQRS-CDGNHVVHLSYLEVYNETV 358 (822)
Q Consensus 282 ~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~--e~~GIIpRal~~LF~~i~~~~-~~~~~~V~vS~lEIYNE~V 358 (822)
+.++.|+|+++|+|||+||||||||||||||||+|+. +++|||||++++||+.+.... ....|.|+|||+|||||+|
T Consensus 75 ~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v 154 (366)
T 2zfi_A 75 RDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERV 154 (366)
T ss_dssp HHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeE
Confidence 9999999999999999999999999999999999984 568999999999999997653 3458999999999999999
Q ss_pred eecCCCC--CCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCC
Q 003413 359 RDLLSPG--RPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASM 435 (822)
Q Consensus 359 ~DLL~p~--~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~ 435 (822)
+|||++. ..+.+++++. |++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++...+...
T Consensus 155 ~DLL~~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~ 234 (366)
T 2zfi_A 155 RDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAET 234 (366)
T ss_dssp EETTCTTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTT
T ss_pred EEccccccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCC
Confidence 9999986 4689999975 899999999999999999999999999999999999999999999999999987655432
Q ss_pred c-eeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcC------------CCCCCccCchhhhh
Q 003413 436 N-IINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEG------------KKHIPYRNSKLTQL 502 (822)
Q Consensus 436 ~-~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~------------~~hIPYRdSKLTrL 502 (822)
. .....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++ ..||||||||||+|
T Consensus 235 ~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~l 314 (366)
T 2zfi_A 235 NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWL 314 (366)
T ss_dssp TCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHH
T ss_pred CccceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHH
Confidence 2 2356799999999999999999999999999999999999999999999873 46999999999999
Q ss_pred hhhccCCCceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhhcccc
Q 003413 503 LKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKEG 547 (822)
Q Consensus 503 LqDSLGGnskT~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk~~ 547 (822)
|||+|||||+|+|||||||+..+++||++||+||+|||+|+|+|.
T Consensus 315 LqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~ 359 (366)
T 2zfi_A 315 LRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVS 359 (366)
T ss_dssp TGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC-------
T ss_pred HHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCC
Confidence 999999999999999999999999999999999999999999985
No 14
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=3.7e-86 Score=718.56 Aligned_cols=320 Identities=38% Similarity=0.569 Sum_probs=275.7
Q ss_pred CCCCeEEEEEcCCCCchhhhcCC-ceEEEEec--CceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhH
Q 003413 209 SGSRILVFVRLRPMSKKEKESGS-RCCVRIVN--KRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTT 285 (822)
Q Consensus 209 ~~~~IrV~VRVRPl~~~E~~~g~-~~~V~v~~--~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v 285 (822)
.+++|+|+|||||++..|...+. ..++.+.. ...+.+.. ....+.|.||+||+++++|++||+. +
T Consensus 2 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v 69 (330)
T 2h58_A 2 SKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLH-----------KGKPVSFELDKVFSPQASQQDVFQE-V 69 (330)
T ss_dssp ---CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEE-----------TTEEEEEECSEEECTTCCHHHHHTT-T
T ss_pred CCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcC-----------CCCeeEEecCeEeCCCCCcHhHHHH-H
Confidence 46899999999999998865432 34455532 22222211 1235789999999999999999997 5
Q ss_pred HHHHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCCC
Q 003413 286 ADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPG 365 (822)
Q Consensus 286 ~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p~ 365 (822)
.|+|+++++|||+||||||||||||||||+|+.+++|||||++++||..+.....+..|.|+|||+|||||+|+|||++.
T Consensus 70 ~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 149 (330)
T 2h58_A 70 QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKE 149 (330)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCS
T ss_pred HHHHHHHhCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhccccc
Confidence 89999999999999999999999999999999999999999999999999877667789999999999999999999864
Q ss_pred --CCceEe--eCC-CCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeE
Q 003413 366 --RPLVLR--EDK-QGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINR 440 (822)
Q Consensus 366 --~~L~ir--ed~-~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~ 440 (822)
..+.++ +++ .|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|+......+ ...
T Consensus 150 ~~~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~---~~~ 226 (330)
T 2h58_A 150 PQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTG---LRT 226 (330)
T ss_dssp SCCCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTTT---EEE
T ss_pred ccccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCCC---cEE
Confidence 345555 454 479999999999999999999999999999999999999999999999999988765432 456
Q ss_pred EeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhccCCCceeeEEEeeC
Q 003413 441 VGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANIS 520 (822)
Q Consensus 441 ~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDSLGGnskT~mIa~IS 520 (822)
.|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++++.||||||||||+||||+|||||+|+||||||
T Consensus 227 ~skL~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~is 306 (330)
T 2h58_A 227 TGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVS 306 (330)
T ss_dssp EEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEEC
T ss_pred EEEEEEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhh
Q 003413 521 PCNLSFGETQNTLHWADRAKEIR 543 (822)
Q Consensus 521 Ps~~~~eETLsTLrFA~Rak~Ik 543 (822)
|+..+++||++||+||+|||+|+
T Consensus 307 P~~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 307 PVEKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp CBGGGHHHHHHHHHHHHHHC---
T ss_pred CccccHHHHHHHHHHHHHHhhCc
Confidence 99999999999999999999986
No 15
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=4.6e-86 Score=723.87 Aligned_cols=330 Identities=38% Similarity=0.616 Sum_probs=266.7
Q ss_pred CCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEecccc--------CCCCchhHHhh
Q 003413 211 SRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASF--------PDSTSQHEVYS 282 (822)
Q Consensus 211 ~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF--------~~~asQeeVF~ 282 (822)
++|+|+|||||++..|...+..++|.+.+.. +.+..+.... .........+.|+||+|| ++.++|++||+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~-~~~~~~~~~~-~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~ 78 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANK-VILNPVNTNL-SKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFK 78 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEETTE-EEECCC------------CCEEEECSEEEECSCTTCTTTBCCHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCCCe-EEEeCCcccc-ccccccCCceEEEeeEEeccCccccccccccHHHHHH
Confidence 4799999999999999988888888776554 4444322111 011123457899999999 45689999999
Q ss_pred hhHHHHHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhc-CCCCcEEEEEEEEEEecceeeec
Q 003413 283 RTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQR-SCDGNHVVHLSYLEVYNETVRDL 361 (822)
Q Consensus 283 ~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~-~~~~~~~V~vS~lEIYNE~V~DL 361 (822)
.++.|+|+++|+|||+||||||||||||||||+|+.+++|||||++++||..+... .....|.|+|||+|||||+|+||
T Consensus 79 ~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DL 158 (354)
T 3gbj_A 79 CLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDL 158 (354)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEET
T ss_pred HhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEc
Confidence 99999999999999999999999999999999999999999999999999998754 34567999999999999999999
Q ss_pred CCCC---CCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCC-Cc
Q 003413 362 LSPG---RPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDAS-MN 436 (822)
Q Consensus 362 L~p~---~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~-~~ 436 (822)
|++. ..+.+++++. |++|.||+++.|.|++|++.+|..|.++|.+++|.||..|||||+||+|.|.+...+.. ..
T Consensus 159 L~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 238 (354)
T 3gbj_A 159 LDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGT 238 (354)
T ss_dssp TC------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCE
T ss_pred cCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCC
Confidence 9875 4689999876 89999999999999999999999999999999999999999999999999988754432 22
Q ss_pred eeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhc------CCCCCCccCchhhhhhhhccCCC
Q 003413 437 IINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVE------GKKHIPYRNSKLTQLLKDSLGGA 510 (822)
Q Consensus 437 ~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~------~~~hIPYRdSKLTrLLqDSLGGn 510 (822)
.....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++ +..||||||||||+||||+||||
T Consensus 239 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGn 318 (354)
T 3gbj_A 239 SGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGN 318 (354)
T ss_dssp EEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTT
T ss_pred CCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCC
Confidence 345779999999999999999999999999999999999999999999986 34699999999999999999999
Q ss_pred ceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhh
Q 003413 511 CNTVMIANISPCNLSFGETQNTLHWADRAKEI 542 (822)
Q Consensus 511 skT~mIa~ISPs~~~~eETLsTLrFA~Rak~I 542 (822)
|+|+|||||||+..+++||++||+||.||+.-
T Consensus 319 skt~mIa~vsP~~~~~~ETlsTLr~a~~~~~~ 350 (354)
T 3gbj_A 319 SKTAMVATVSPAADNYDETLSTLRYADRAKHH 350 (354)
T ss_dssp CEEEEEEEECCBGGGHHHHHHHHHHHHHHC--
T ss_pred CeEEEEEEeCCCcchHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999853
No 16
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=5e-86 Score=721.27 Aligned_cols=318 Identities=41% Similarity=0.608 Sum_probs=265.8
Q ss_pred CCCCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHH
Q 003413 209 SGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADL 288 (822)
Q Consensus 209 ~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pL 288 (822)
..++|+|+|||||++..|...+...|+.+.++...+.. ...+.|.||+||+++++|++||+.++.|+
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~-------------~~~~~f~FD~Vf~~~~~Q~~vy~~~~~pl 75 (344)
T 4a14_A 9 EEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL-------------GRDRHFGFHVVLAEDAGQEAVYQACVQPL 75 (344)
T ss_dssp CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEE-------------TTTEEEECSEEECTTCCHHHHHHHHTHHH
T ss_pred cccceEEEEEecccchHHHhccCeeEEEEcCCCceEEe-------------cccceEEEEEEEecCcchhHHHHHHHHHH
Confidence 57899999999999999998888888877654322211 23679999999999999999999999999
Q ss_pred HHHHHcCCCceeeeeccCCCCcceeeccc------CCCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecC
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTMLGT------IENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLL 362 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM~G~------~e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL 362 (822)
|+++|+|||+||||||||||||||||+|. .+++|||||++++||+.+... ....|.|+|||+|||||+|+|||
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL 154 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEN-DLLDCLVHVSYLEVYKEEFRDLL 154 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHC-TTSEEEEEEEEEEEETTEEEETT
T ss_pred HHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccc-cceeeEEEEehhhhhHHHHHHHH
Confidence 99999999999999999999999999997 367899999999999999775 36789999999999999999999
Q ss_pred CCC---CCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCC----
Q 003413 363 SPG---RPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDAS---- 434 (822)
Q Consensus 363 ~p~---~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~---- 434 (822)
++. ..+.+++++. |++|.||+++.|.|++|++.+|..|.++|.+++|.||..|||||+||+|+|++......
T Consensus 155 ~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~ 234 (344)
T 4a14_A 155 EVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPR 234 (344)
T ss_dssp SSCCCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC--------
T ss_pred HhccccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCC
Confidence 864 4699999976 79999999999999999999999999999999999999999999999999998753321
Q ss_pred -CceeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCC---CCCCccCchhhhhhhhccCCC
Q 003413 435 -MNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGK---KHIPYRNSKLTQLLKDSLGGA 510 (822)
Q Consensus 435 -~~~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~---~hIPYRdSKLTrLLqDSLGGn 510 (822)
.......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++++ .||||||||||+||||+||||
T Consensus 235 ~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGn 314 (344)
T 4a14_A 235 PAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGN 314 (344)
T ss_dssp ----CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTT
T ss_pred ccccceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCC
Confidence 1123467999999999999999999999999999999999999999999998743 599999999999999999999
Q ss_pred ceeeEEEeeCCCCCCHHHHHHHHHHHHHhh
Q 003413 511 CNTVMIANISPCNLSFGETQNTLHWADRAK 540 (822)
Q Consensus 511 skT~mIa~ISPs~~~~eETLsTLrFA~Rak 540 (822)
|+|+|||||||+..+++||++||+||+|||
T Consensus 315 skt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 315 AKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp SEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred cceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 999999999999999999999999999996
No 17
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=3.7e-86 Score=725.78 Aligned_cols=328 Identities=35% Similarity=0.523 Sum_probs=283.9
Q ss_pred CeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHHHHH
Q 003413 212 RILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADLVEA 291 (822)
Q Consensus 212 ~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pLV~s 291 (822)
+|+|+|||||++..|...+..+||.+.++.++.+.++....+.. .....+.|.||+||+++++|++||+.++.|+|++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~--~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 78 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMT--KYIERHEFIVDKVFDDTVDNFTVYENTIKPLIID 78 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTE--EEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccc--cccccceEEeeeEecCCCCHHHHHHHHhhhhhhh
Confidence 59999999999999998888889999888888776543221110 1123578999999999999999999999999999
Q ss_pred HHc-CCCceeeeeccCCCCcceeecccC-----CCCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCCCC
Q 003413 292 VLQ-GRNGSVFCYGATGAGKTYTMLGTI-----ENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPG 365 (822)
Q Consensus 292 vL~-GyN~tIfAYGQTGSGKTyTM~G~~-----e~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~p~ 365 (822)
+++ |||+||||||||||||||||+|+. +++|||||++++||..+.....+..|.|+|||+|||||+|+|||++.
T Consensus 79 ~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~ 158 (360)
T 1ry6_A 79 LYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKR 158 (360)
T ss_dssp HHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC-
T ss_pred hccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCC
Confidence 996 999999999999999999999974 67899999999999999877667789999999999999999999998
Q ss_pred CCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEeeE
Q 003413 366 RPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKL 444 (822)
Q Consensus 366 ~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~SkL 444 (822)
..+.+++++. |++|.||+++.|.|++|++.+|..|.++|.+++|.||..|||||+||+|.|+... . ....|+|
T Consensus 159 ~~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~----~--~~~~skL 232 (360)
T 1ry6_A 159 KMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN----K--NTSLGKI 232 (360)
T ss_dssp ----------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT----T--TEEEEEE
T ss_pred ccceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc----C--CcceeEE
Confidence 8888888764 8999999999999999999999999999999999999999999999999997532 1 2457999
Q ss_pred EEeecCCCcccccccchh-hhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhccCCCceeeEEEeeCCCC
Q 003413 445 SLIDLAGSERALATDQRT-LRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCN 523 (822)
Q Consensus 445 ~LVDLAGSER~~kt~~~g-~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~ 523 (822)
+|||||||||..++++.| .+++|+.+||+||++||+||.+|+.++.||||||||||+||||+|||||+|+|||||||+.
T Consensus 233 ~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~ 312 (360)
T 1ry6_A 233 AFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTI 312 (360)
T ss_dssp EEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBG
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCc
Confidence 999999999999998876 4688999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhhcccc
Q 003413 524 LSFGETQNTLHWADRAKEIRTKEG 547 (822)
Q Consensus 524 ~~~eETLsTLrFA~Rak~Iknk~~ 547 (822)
.+++||++||+||+|||+|+|.+.
T Consensus 313 ~~~~ETlsTLrfA~rak~i~n~~~ 336 (360)
T 1ry6_A 313 SCCEQTLNTLRYSSRVKNKGNSKL 336 (360)
T ss_dssp GGHHHHHHHHHHHHHHCC------
T ss_pred ccHHHHHHHHHHHHHHhhcccCcc
Confidence 999999999999999999999764
No 18
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.4e-86 Score=729.42 Aligned_cols=340 Identities=34% Similarity=0.433 Sum_probs=253.0
Q ss_pred cccccCCCCCCCCCeEEEEEcCCCCchhhhcCCceEEEE-------ecCceeEEeeccCcchhh-h-hcccCCeeeEecc
Q 003413 199 PEAVLGKHVPSGSRILVFVRLRPMSKKEKESGSRCCVRI-------VNKRDVYLTEFANEHDYL-R-LKRLRGRHFTFDA 269 (822)
Q Consensus 199 ~~~~~~~~~~~~~~IrV~VRVRPl~~~E~~~g~~~~V~v-------~~~~~v~l~~~~~~~~~~-~-~~~~~~k~F~FD~ 269 (822)
...+|+..++.+++|+|+|||||+++.|...+..+++.. .+...+.+..+....... . ......+.|+||+
T Consensus 10 ~~~~hn~~~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~ 89 (376)
T 2rep_A 10 HSSGLVPRGSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDR 89 (376)
T ss_dssp -------------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSE
T ss_pred cccccchhhccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecE
Confidence 445677788899999999999999999976653322111 233444443221110000 0 0112356899999
Q ss_pred ccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeecccCC----CCchHHHHHHHHHHhhhhcC-CCCcE
Q 003413 270 SFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIE----NPGVMVLAIKDLFTKIRQRS-CDGNH 344 (822)
Q Consensus 270 VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e----~~GIIpRal~~LF~~i~~~~-~~~~~ 344 (822)
||+++++|++||+. +.|+|+++|+|||+||||||||||||||||+|+.. ++|||||++++||+.+.... ....|
T Consensus 90 Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~ 168 (376)
T 2rep_A 90 VFPPGSGQDEVFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTY 168 (376)
T ss_dssp EECTTCCHHHHHHH-HHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEE
T ss_pred EcCCcccchhhhhh-HHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEE
Confidence 99999999999997 56899999999999999999999999999999753 68999999999999987643 35689
Q ss_pred EEEEEEEEEecceeeecCCCC------CCceEeeC---CCCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCC
Q 003413 345 VVHLSYLEVYNETVRDLLSPG------RPLVLRED---KQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETS 415 (822)
Q Consensus 345 ~V~vS~lEIYNE~V~DLL~p~------~~L~ired---~~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~S 415 (822)
.|+|||+|||||+|+|||++. ..+.++++ ..|++|.||+++.|.+++|++.+|..|.++|++++|.||..|
T Consensus 169 ~v~vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~S 248 (376)
T 2rep_A 169 SFVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERS 248 (376)
T ss_dssp EEEEEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CG
T ss_pred EEEEEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCC
Confidence 999999999999999999874 35788887 348999999999999999999999999999999999999999
Q ss_pred CCceeEEEEEEEEEeecCCCceeeEEeeEEEeecCCCcccccccchh----hhhHHHHhhhhhHHHHHHHHHHHhcCCCC
Q 003413 416 SRSHAILQVIIEYRVKDASMNIINRVGKLSLIDLAGSERALATDQRT----LRSLEGANINRSLLALSSCINALVEGKKH 491 (822)
Q Consensus 416 SRSH~IftI~V~~~~~~~~~~~~~~~SkL~LVDLAGSER~~kt~~~g----~rlkE~~~INkSLsaLg~VI~ALa~~~~h 491 (822)
||||+||+|.|+....... ....|+|+|||||||||..++++.| .|++|+.+||+||++||+||.+|++++.|
T Consensus 249 SRSH~Ifti~v~~~~~~~~---~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~h 325 (376)
T 2rep_A 249 SRSHSVFQLQISGEHSSRG---LQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESH 325 (376)
T ss_dssp GGSEEEEEEEEEEEESSSC---CEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTCSC
T ss_pred CCceEEEEEEEEEEecCCC---cEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCc
Confidence 9999999999988765432 3467999999999999999999999 99999999999999999999999999999
Q ss_pred CCccCchhhhhhhhccCCCceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhh
Q 003413 492 IPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEI 542 (822)
Q Consensus 492 IPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~~~~eETLsTLrFA~Rak~I 542 (822)
|||||||||+||||+|||||+|+|||||||+..+++||++||+||+|++++
T Consensus 326 VPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 326 VPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp CCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred cCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999864
No 19
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=1.9e-86 Score=732.90 Aligned_cols=327 Identities=39% Similarity=0.544 Sum_probs=268.2
Q ss_pred CCCCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHH
Q 003413 209 SGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADL 288 (822)
Q Consensus 209 ~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pL 288 (822)
..++|+|+|||||++..|...+...+|.+.+...+.+..+....+.. .....+.|+||+||+++++|++||+.++.|+
T Consensus 49 ~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~--~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~pl 126 (387)
T 2heh_A 49 EEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLT--KYLENQAFCFDFAFDETASNEVVYRFTARPL 126 (387)
T ss_dssp CCCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCC--EEEEEEEEECSEEECTTCCHHHHHHHTTHHH
T ss_pred CCCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCcccccc--ccccccEEeeeEEEecCCCceeehhhhHHHH
Confidence 48999999999999999998888888888777777776543221110 1123578999999999999999999999999
Q ss_pred HHHHHcCCCceeeeeccCCCCcceeecccC------CCCchHHHHHHHHHHhhhhcC-CCCcEEEEEEEEEEecceeeec
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTMLGTI------ENPGVMVLAIKDLFTKIRQRS-CDGNHVVHLSYLEVYNETVRDL 361 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM~G~~------e~~GIIpRal~~LF~~i~~~~-~~~~~~V~vS~lEIYNE~V~DL 361 (822)
|+++|+|||+||||||||||||||||+|+. .++|||||++++||..+.... ....|.|+|||+|||||+|+||
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DL 206 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDL 206 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEET
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEEC
Confidence 999999999999999999999999999963 468999999999999886532 2567999999999999999999
Q ss_pred CCCCCCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeE
Q 003413 362 LSPGRPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINR 440 (822)
Q Consensus 362 L~p~~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~ 440 (822)
|++...+.+++++. |++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|+.. ...
T Consensus 207 L~~~~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~--------~~~ 278 (387)
T 2heh_A 207 LNKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK--------GRM 278 (387)
T ss_dssp TTTTEECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS--------SSE
T ss_pred CCCCccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC--------Cee
Confidence 99998999999976 899999999999999999999999999999999999999999999999999743 135
Q ss_pred EeeEEEeecCCCccccccc-chhhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhc-cCCCceeeEEEe
Q 003413 441 VGKLSLIDLAGSERALATD-QRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDS-LGGACNTVMIAN 518 (822)
Q Consensus 441 ~SkL~LVDLAGSER~~kt~-~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDS-LGGnskT~mIa~ 518 (822)
.|+|+|||||||||..+++ ..+.+++|+.+||+||++||+||.+|++++.||||||||||+||||+ |||||+|+||||
T Consensus 279 ~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTrlLqdsllGgnskT~mIa~ 358 (387)
T 2heh_A 279 HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAT 358 (387)
T ss_dssp EEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGGSSTTEEEEEEEE
T ss_pred eeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHHHHhhhccCCCCeEEEEEE
Confidence 7999999999999998876 45678899999999999999999999999999999999999999999 699999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhhhhhcc
Q 003413 519 ISPCNLSFGETQNTLHWADRAKEIRTK 545 (822)
Q Consensus 519 ISPs~~~~eETLsTLrFA~Rak~Iknk 545 (822)
|||+..+++||++||+||+|||+|++.
T Consensus 359 isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 359 ISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp ECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred eCCccchHHHHHHHHHHHHHhccCcCC
Confidence 999999999999999999999999864
No 20
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-86 Score=726.07 Aligned_cols=327 Identities=35% Similarity=0.545 Sum_probs=262.0
Q ss_pred CCCCCeEEEEEcCCCCchhhhcCCceEEEEe-cCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHH
Q 003413 208 PSGSRILVFVRLRPMSKKEKESGSRCCVRIV-NKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTA 286 (822)
Q Consensus 208 ~~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~-~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~ 286 (822)
..+++|+|||||||++..|.+ ++.+. +...+.+.................+.|+||+||+ +++|++||+.++.
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~ 94 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHE-----MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAK 94 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTT-----TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTH
T ss_pred CCCCCEEEEEEcCCCCccccc-----ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHH
Confidence 356899999999999876643 22232 3444555443322222222234567899999997 5899999999999
Q ss_pred HHHHHHHcCCCceeeeeccCCCCcceeecccCC---CCchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeecCC
Q 003413 287 DLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIE---NPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLS 363 (822)
Q Consensus 287 pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e---~~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DLL~ 363 (822)
|+|+++|+|||+||||||||||||||||+|+.. ++|||||++++||+.+.... ...|.|+|||+|||||+|+|||+
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~-~~~~~v~vS~~EIYnE~i~DLL~ 173 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERP-THAITVRVSYLEIYNESLFDLLS 173 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCT-TSCEEEEEEEEEEETTEEEETTS
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCC-CCcEEEEEEEEEEeccccccccc
Confidence 999999999999999999999999999999754 47999999999999887654 67899999999999999999998
Q ss_pred CC-------CCceEeeCCCCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCc
Q 003413 364 PG-------RPLVLREDKQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMN 436 (822)
Q Consensus 364 p~-------~~L~ired~~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~ 436 (822)
+. ..+.+++++.|++|.|++++.|.+.+|++.+|..|.++|.+++|.||..|||||+||+|+|+.........
T Consensus 174 ~~~~~~~~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~ 253 (359)
T 3nwn_A 174 TLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEE 253 (359)
T ss_dssp SSTTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------
T ss_pred cccccccccccceEEecCCceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccCc
Confidence 53 35788899999999999999999999999999999999999999999999999999999998765543322
Q ss_pred eeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCC-CCCCccCchhhhhhhhccCCCceeeE
Q 003413 437 IINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGK-KHIPYRNSKLTQLLKDSLGGACNTVM 515 (822)
Q Consensus 437 ~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~-~hIPYRdSKLTrLLqDSLGGnskT~m 515 (822)
....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++++ .||||||||||+||||+|||||+|+|
T Consensus 254 -~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~m 332 (359)
T 3nwn_A 254 -KYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVL 332 (359)
T ss_dssp -CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEE
T ss_pred -ccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEE
Confidence 3467999999999999999999999999999999999999999999999754 69999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHhhhh
Q 003413 516 IANISPCNLSFGETQNTLHWADRAKEI 542 (822)
Q Consensus 516 Ia~ISPs~~~~eETLsTLrFA~Rak~I 542 (822)
||||||+..+++||++||+||+|||+|
T Consensus 333 I~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 333 VTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp EEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999987
No 21
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=1.8e-85 Score=718.13 Aligned_cols=324 Identities=35% Similarity=0.497 Sum_probs=262.4
Q ss_pred CCCCCeEEEEEcCCCCchhhhcCCceEEEEecC----ceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhh
Q 003413 208 PSGSRILVFVRLRPMSKKEKESGSRCCVRIVNK----RDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSR 283 (822)
Q Consensus 208 ~~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~----~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~ 283 (822)
+.+|+|+|+|||||++..|...+...++...+. ..+.+..... ....+.|+||+||+++++|++||+.
T Consensus 2 ~lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~f~FD~Vf~~~~~Q~~vf~~ 73 (349)
T 3t0q_A 2 ALRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEG--------RILSYNFQFDMIFEPSHTNKEIFEE 73 (349)
T ss_dssp ---CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC----------CEEEEEEESEEECTTCCHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCC--------cccceeeecCEEECCCccHHHHHHH
Confidence 467999999999999999977666555543221 2233322111 1235789999999999999999997
Q ss_pred hHHHHHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcC-CCCcEEEEEEEEEEecceeeecC
Q 003413 284 TTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRS-CDGNHVVHLSYLEVYNETVRDLL 362 (822)
Q Consensus 284 ~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~-~~~~~~V~vS~lEIYNE~V~DLL 362 (822)
+.|+|+++|+|||+||||||||||||||||+|+ ++|||||++++||+.+.... ....|.|.|||+|||||+|+|||
T Consensus 74 -v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL 150 (349)
T 3t0q_A 74 -IRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLL 150 (349)
T ss_dssp -HHHHHHGGGTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETT
T ss_pred -HHHHHHHHHCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccc
Confidence 579999999999999999999999999999996 46999999999999987643 35689999999999999999999
Q ss_pred CCC------------CCceEeeCC--CCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEE
Q 003413 363 SPG------------RPLVLREDK--QGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEY 428 (822)
Q Consensus 363 ~p~------------~~L~ired~--~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~ 428 (822)
++. ..+.+++++ .|++|.||+++.|.|++|++.+|..|.++|.+++|.||..|||||+||+|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~ 230 (349)
T 3t0q_A 151 RDFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHING 230 (349)
T ss_dssp C---------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEE
T ss_pred cccccccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEE
Confidence 863 346677664 479999999999999999999999999999999999999999999999999998
Q ss_pred EeecCCCceeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCC---CCCCccCchhhhhhhh
Q 003413 429 RVKDASMNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGK---KHIPYRNSKLTQLLKD 505 (822)
Q Consensus 429 ~~~~~~~~~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~---~hIPYRdSKLTrLLqD 505 (822)
.....+ ....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++++ .||||||||||+||||
T Consensus 231 ~~~~~~---~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqd 307 (349)
T 3t0q_A 231 RNLHTG---ETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQY 307 (349)
T ss_dssp EETTTC---CEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGG
T ss_pred EecCCC---CeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHH
Confidence 765543 2467999999999999999999999999999999999999999999999865 4999999999999999
Q ss_pred ccCCCceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhhcc
Q 003413 506 SLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTK 545 (822)
Q Consensus 506 SLGGnskT~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk 545 (822)
+|||||+|+|||||||+..+++||++||+||+|++.|+..
T Consensus 308 sLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~ 347 (349)
T 3t0q_A 308 SLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347 (349)
T ss_dssp GSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHC----
T ss_pred hcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccC
Confidence 9999999999999999999999999999999999999754
No 22
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=1e-85 Score=731.29 Aligned_cols=328 Identities=38% Similarity=0.553 Sum_probs=270.8
Q ss_pred CCCCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhhHHHH
Q 003413 209 SGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRTTADL 288 (822)
Q Consensus 209 ~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pL 288 (822)
..++|+|+|||||++..|...+...||.+.+...+.+..+....+.. .....+.|+||+||+++++|++||+.++.|+
T Consensus 69 ~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~--~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~pl 146 (410)
T 1v8k_A 69 EEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLT--KYLENQAFCFDFAFDETASNEVVYRFTARPL 146 (410)
T ss_dssp SCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCC--EEEEEEEEECSEEECTTCCHHHHHHHTTHHH
T ss_pred CCCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCccccccc--ccccceEEeeeEEEecCCChhhhhHHHHHHH
Confidence 47899999999999999998888888888877777776543221110 1123578999999999999999999999999
Q ss_pred HHHHHcCCCceeeeeccCCCCcceeecccC------CCCchHHHHHHHHHHhhhhcC-CCCcEEEEEEEEEEecceeeec
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTMLGTI------ENPGVMVLAIKDLFTKIRQRS-CDGNHVVHLSYLEVYNETVRDL 361 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM~G~~------e~~GIIpRal~~LF~~i~~~~-~~~~~~V~vS~lEIYNE~V~DL 361 (822)
|+++|+|||+||||||||||||||||+|+. .++|||||++++||..+.... ....|.|+|||+|||||+|+||
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DL 226 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDL 226 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEET
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEEC
Confidence 999999999999999999999999999963 358999999999999886532 3568999999999999999999
Q ss_pred CCCCCCceEeeCCC-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeE
Q 003413 362 LSPGRPLVLREDKQ-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINR 440 (822)
Q Consensus 362 L~p~~~L~ired~~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~ 440 (822)
|++...+.+++++. |++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|+.. ...
T Consensus 227 L~~~~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~--------~~~ 298 (410)
T 1v8k_A 227 LNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK--------GRL 298 (410)
T ss_dssp TTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS--------SSE
T ss_pred CCCCCCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeC--------Ccc
Confidence 99998999999975 899999999999999999999999999999999999999999999999998743 125
Q ss_pred EeeEEEeecCCCccccccc-chhhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhc-cCCCceeeEEEe
Q 003413 441 VGKLSLIDLAGSERALATD-QRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDS-LGGACNTVMIAN 518 (822)
Q Consensus 441 ~SkL~LVDLAGSER~~kt~-~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDS-LGGnskT~mIa~ 518 (822)
.|+|+|||||||||..+++ ..|.+++|+.+||+||++||+||.+|+.++.||||||||||+||||| |||||+|+||||
T Consensus 299 ~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKLTrLLqdsllGgnskT~mIa~ 378 (410)
T 1v8k_A 299 HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAM 378 (410)
T ss_dssp EEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHHSSSEEEEEEEE
T ss_pred eeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchhHHHHhhcccCCCceEEEEEE
Confidence 7999999999999998876 45678889999999999999999999999999999999999999999 699999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhhhhhccc
Q 003413 519 ISPCNLSFGETQNTLHWADRAKEIRTKE 546 (822)
Q Consensus 519 ISPs~~~~eETLsTLrFA~Rak~Iknk~ 546 (822)
|||+..+++||++||+||+||++|..+|
T Consensus 379 iSP~~~~~~ETlsTLrfA~rak~i~~~~ 406 (410)
T 1v8k_A 379 ISPGISSCEYTLNTLRYADRVKELSHHH 406 (410)
T ss_dssp ECCBGGGHHHHHHHHHHHHHHHTTC---
T ss_pred eCCccccHHHHHHHHHHHHHhccCCCCC
Confidence 9999999999999999999999998766
No 23
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=7.1e-85 Score=712.81 Aligned_cols=321 Identities=33% Similarity=0.495 Sum_probs=266.2
Q ss_pred CCCeEEEEEcCCCCc-hhhhcCCceEEEEec------CceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhh
Q 003413 210 GSRILVFVRLRPMSK-KEKESGSRCCVRIVN------KRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYS 282 (822)
Q Consensus 210 ~~~IrV~VRVRPl~~-~E~~~g~~~~V~v~~------~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~ 282 (822)
+++|+|+|||||++. .| .....++.+.. ...+.+.... .....+.|+||+||+++++|++||+
T Consensus 2 k~nIrV~vRvRP~~~~~e--~~~~~~~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~f~FD~Vf~~~~~Q~~Vy~ 71 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLE--NSDTSLINVNEFDDNSGVQSMEVTKIQ--------NTAQVHEFKFDKIFDQQDTNVDVFK 71 (347)
T ss_dssp -CEEEEEEEECCCCTTTC--CCTTEEEEECCCBTTTTBEEEEEEEGG--------GTTCEEEEEESEEECTTCCHHHHHH
T ss_pred CCCeEEEEEeCCCCcccc--cCCCceEEEecccCCCCceEEEEecCC--------CCcCceEEeeCEEECCCCCHHHHHH
Confidence 689999999999987 34 23334444431 1223333221 1134579999999999999999999
Q ss_pred hhHHHHHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcC-CCCcEEEEEEEEEEecceeeec
Q 003413 283 RTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRS-CDGNHVVHLSYLEVYNETVRDL 361 (822)
Q Consensus 283 ~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~-~~~~~~V~vS~lEIYNE~V~DL 361 (822)
. +.|+|+++|+|||+||||||||||||||||+|. ++|||||++++||+.+.... ....|.|+|||+|||||+|+||
T Consensus 72 ~-v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DL 148 (347)
T 1f9v_A 72 E-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDL 148 (347)
T ss_dssp H-HHHHHGGGGGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEET
T ss_pred H-HHHHHHHhcCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeec
Confidence 7 579999999999999999999999999999995 57999999999999997643 3568999999999999999999
Q ss_pred CCCCC----------CceEeeCC--CCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEE
Q 003413 362 LSPGR----------PLVLREDK--QGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYR 429 (822)
Q Consensus 362 L~p~~----------~L~ired~--~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~ 429 (822)
|++.. .+.++++. .|++|.|++++.|.+++|++.+|..|.++|.+++|.||..|||||+||+|.|.+.
T Consensus 149 L~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~ 228 (347)
T 1f9v_A 149 LRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGS 228 (347)
T ss_dssp TC-------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEE
T ss_pred cCCccccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEe
Confidence 98753 36677763 4799999999999999999999999999999999999999999999999999886
Q ss_pred eecCCCceeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCC---CCCCccCchhhhhhhhc
Q 003413 430 VKDASMNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGK---KHIPYRNSKLTQLLKDS 506 (822)
Q Consensus 430 ~~~~~~~~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~---~hIPYRdSKLTrLLqDS 506 (822)
....+ ....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++++ .||||||||||+||||+
T Consensus 229 ~~~~~---~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqds 305 (347)
T 1f9v_A 229 NAKTG---AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYS 305 (347)
T ss_dssp CC--C---CEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHH
T ss_pred cCCCC---ceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHH
Confidence 54432 3467999999999999999999999999999999999999999999999876 79999999999999999
Q ss_pred cCCCceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhhccc
Q 003413 507 LGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKE 546 (822)
Q Consensus 507 LGGnskT~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk~ 546 (822)
|||||+|+|||||||+..+++||++||+||+||++|+..+
T Consensus 306 LgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~ 345 (347)
T 1f9v_A 306 LTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 345 (347)
T ss_dssp HSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC-
T ss_pred hCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCC
Confidence 9999999999999999999999999999999999998765
No 24
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=3.4e-85 Score=717.60 Aligned_cols=329 Identities=35% Similarity=0.535 Sum_probs=263.7
Q ss_pred CCCCCCCeEEEEEcCCCCchhhhcCCceEEEEe-cCceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhh
Q 003413 206 HVPSGSRILVFVRLRPMSKKEKESGSRCCVRIV-NKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRT 284 (822)
Q Consensus 206 ~~~~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~-~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~ 284 (822)
....+|+|+|+|||||+...+ ..++.+. ++..+.+..+..............+.|+||+||+ +++|++||+.+
T Consensus 18 ~~~~~g~IrV~vRvRP~~~~~-----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~ 91 (358)
T 2nr8_A 18 GSGTRKKVHAFVRVKPTDDFA-----HEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETV 91 (358)
T ss_dssp -----CCEEEEEEECCCSSCC-----TTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHH
T ss_pred CCCCCCCeEEEEEcCCCCCCc-----cceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHH
Confidence 344689999999999987543 2344444 4455555544332221111223467899999995 79999999999
Q ss_pred HHHHHHHHHcCCCceeeeeccCCCCcceeecccCCC---CchHHHHHHHHHHhhhhcCCCCcEEEEEEEEEEecceeeec
Q 003413 285 TADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIEN---PGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDL 361 (822)
Q Consensus 285 v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~---~GIIpRal~~LF~~i~~~~~~~~~~V~vS~lEIYNE~V~DL 361 (822)
+.|+|+++|+|||+||||||||||||||||+|+.++ +|||||++++||+.+.... ...|.|+|||+|||||+|+||
T Consensus 92 ~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~-~~~~~v~vS~~EIYnE~i~DL 170 (358)
T 2nr8_A 92 AKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERP-THAITVRVSYLEIYNESLFDL 170 (358)
T ss_dssp THHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCT-TSCEEEEEEEEEEETTEEEET
T ss_pred HHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcC-CceEEEEEEEEEEeCCeeeEC
Confidence 999999999999999999999999999999998765 8999999999999997654 568999999999999999999
Q ss_pred CCCC-------CCceEeeCCCCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCC
Q 003413 362 LSPG-------RPLVLREDKQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDAS 434 (822)
Q Consensus 362 L~p~-------~~L~ired~~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~ 434 (822)
|++. .++.+++++.|++|.||+++.|.+.+|++.+|..|.++|.+++|.||..|||||+||+|.|+.......
T Consensus 171 L~~~~~~~~~~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~ 250 (358)
T 2nr8_A 171 LSTLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLS 250 (358)
T ss_dssp TSSSTTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-----
T ss_pred cCCccccCccCCceEEEECCCceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccCC
Confidence 9862 468999999999999999999999999999999999999999999999999999999999987654332
Q ss_pred CceeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCC-CCCCccCchhhhhhhhccCCCcee
Q 003413 435 MNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGK-KHIPYRNSKLTQLLKDSLGGACNT 513 (822)
Q Consensus 435 ~~~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~-~hIPYRdSKLTrLLqDSLGGnskT 513 (822)
.. ....|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|++++ .||||||||||+||||+|||||+|
T Consensus 251 ~~-~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt 329 (358)
T 2nr8_A 251 EE-KYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNM 329 (358)
T ss_dssp ---CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEE
T ss_pred CC-CEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeE
Confidence 22 3457999999999999999999999999999999999999999999999865 699999999999999999999999
Q ss_pred eEEEeeCCCCCCHHHHHHHHHHHHHhhhh
Q 003413 514 VMIANISPCNLSFGETQNTLHWADRAKEI 542 (822)
Q Consensus 514 ~mIa~ISPs~~~~eETLsTLrFA~Rak~I 542 (822)
+|||||||+..+++||++||+||+|||.|
T Consensus 330 ~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 330 VLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999986
No 25
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=8.5e-85 Score=725.80 Aligned_cols=349 Identities=33% Similarity=0.497 Sum_probs=281.5
Q ss_pred cccccCcchhhhccCcccccCCCCCCCCCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCe
Q 003413 184 LKGVTGDKNMQELEKPEAVLGKHVPSGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGR 263 (822)
Q Consensus 184 ~~~~~g~~~~~~l~~~~~~~~~~~~~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k 263 (822)
.+....+..++.|||. .++.+|+|+|||||||++..|...+ .+++.+.+..++.+........ .....+
T Consensus 38 ~~l~~~~~~rr~l~n~------~~~l~gnIrV~vRvRP~~~~E~~~~-~~~~~~~~~~~v~~~~~~~~~~----~~~~~~ 106 (412)
T 3u06_A 38 EQLFQSNMERKELHNT------VMDLRDNIRVFCRIRPPLESEENRM-CCTWTYHDESTVELQSIDAQAK----SKMGQQ 106 (412)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHTCSEEEEEEECCCCGGGTTSC-BCEEEEEETTEEEEECCC-----------CCC
T ss_pred HHHHHHHHHHHHHHHH------HHHhCCCEEEEEEcCCCCchhccCc-ceEEEecCCCEEEEecCCcccc----cccCce
Confidence 3344456677777765 4467899999999999999886543 3455566666666643322111 112357
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcC-CCC
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRS-CDG 342 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~-~~~ 342 (822)
.|+||+||+++++|++||+. +.|+|+++|+|||+||||||||||||||||+|..+++|||||++++||..+.... ...
T Consensus 107 ~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~ 185 (412)
T 3u06_A 107 IFSFDQVFHPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGW 185 (412)
T ss_dssp EEECSEEECTTCCHHHHHTT-THHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEeeCeEcCCCCCHHHHHHH-HHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCc
Confidence 89999999999999999985 6799999999999999999999999999999999999999999999999997643 356
Q ss_pred cEEEEEEEEEEecceeeecCCCCC-CceEe--eCC-CCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCc
Q 003413 343 NHVVHLSYLEVYNETVRDLLSPGR-PLVLR--EDK-QGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRS 418 (822)
Q Consensus 343 ~~~V~vS~lEIYNE~V~DLL~p~~-~L~ir--ed~-~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRS 418 (822)
.|.|+|||+|||||+|+|||++.. .+.++ +++ .|++|.||+++.|.+++|++.+|..|.++|.+++|.||..||||
T Consensus 186 ~~~v~vS~~EIYnE~i~DLL~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRS 265 (412)
T 3u06_A 186 EYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRS 265 (412)
T ss_dssp EEEEEEEEEEEETTEEEETTCCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTC
T ss_pred eEEEEEEEEEEeCCeeEEcCCCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCc
Confidence 899999999999999999998753 44454 444 48999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEEEeecCCCceeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCch
Q 003413 419 HAILQVIIEYRVKDASMNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSK 498 (822)
Q Consensus 419 H~IftI~V~~~~~~~~~~~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSK 498 (822)
|+||+|.|........ ....|+|+|||||||||.. .+.+++|+.+||+||++||+||.+|+++..||||||||
T Consensus 266 H~if~i~v~~~~~~~~---~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSk 338 (412)
T 3u06_A 266 HAVTKLELIGRHAEKQ---EISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSK 338 (412)
T ss_dssp EEEEEEEEEEEETTTT---EEEEEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTCSCCCGGGSH
T ss_pred eEEEEEEEEEEeCCCC---CEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccCCCCCccccH
Confidence 9999999988765442 3467999999999999974 35789999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhhcccccccc
Q 003413 499 LTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKEGEANE 551 (822)
Q Consensus 499 LTrLLqDSLGGnskT~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk~~~~ne 551 (822)
||+||||+|||||+|+|||||||+..+++||++||+||+|++.|+..+...|.
T Consensus 339 LT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~~~~n~ 391 (412)
T 3u06_A 339 LTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 391 (412)
T ss_dssp HHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhcccccccccc
Confidence 99999999999999999999999999999999999999999999866544443
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-84 Score=722.78 Aligned_cols=343 Identities=32% Similarity=0.473 Sum_probs=280.7
Q ss_pred hcccccCcchhhhccCcccccCCCCCCCCCeEEEEEcCCCCchhhhcCCceEEEEe--cC----ceeEEeeccCcchhhh
Q 003413 183 ELKGVTGDKNMQELEKPEAVLGKHVPSGSRILVFVRLRPMSKKEKESGSRCCVRIV--NK----RDVYLTEFANEHDYLR 256 (822)
Q Consensus 183 e~~~~~g~~~~~~l~~~~~~~~~~~~~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~--~~----~~v~l~~~~~~~~~~~ 256 (822)
+.+....+..++.||+. .++.+|+|+|||||||+...+.... ..++.+. +. ..+.+.....
T Consensus 37 ~~~~~~~~~~rr~l~n~------~~elkgnIrV~vRvRP~~~~~e~~~-~~~~~v~~~~~~~~~~~~~~~~~~~------ 103 (403)
T 4etp_A 37 NEILIKEETVRRTLHNE------LQELRGNIRVYLRIRPALKNLENSD-TSLINVNEFDDNSGVQSMEVTKIQN------ 103 (403)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHCSEEEEEEECCCCTTTSCSC-CTTEEECCCBTTTTBEEEEEEECSS------
T ss_pred HHHHHHHHHHHHHHHHH------HHHcCCCeEEEEEeCCCCCcccccC-CCeeEEeeccCCCCceEEEEecCCC------
Confidence 33444455566666664 4467899999999999987732222 2223222 11 1122221111
Q ss_pred hcccCCeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhh
Q 003413 257 LKRLRGRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIR 336 (822)
Q Consensus 257 ~~~~~~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~ 336 (822)
....+.|.||+||+++++|++||+. +.|+|+++|+|||+||||||||||||||||+|+ ++|||||++++||..+.
T Consensus 104 --~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~ 178 (403)
T 4etp_A 104 --TAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWIN 178 (403)
T ss_dssp --SCEEEEEEESEEECTTCCHHHHHHH-HHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHH
T ss_pred --CcCceEEEcCEEECCCCchHHHHHH-HHHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHH
Confidence 1235789999999999999999987 568999999999999999999999999999996 46999999999999997
Q ss_pred hc-CCCCcEEEEEEEEEEecceeeecCCCCC----------CceEeeCC--CCeEecCcEEEEcCCHHHHHHHHHhhhcc
Q 003413 337 QR-SCDGNHVVHLSYLEVYNETVRDLLSPGR----------PLVLREDK--QGILAAGLTQYRAYSTDEVMALLQRGNQN 403 (822)
Q Consensus 337 ~~-~~~~~~~V~vS~lEIYNE~V~DLL~p~~----------~L~ired~--~Gv~V~gLtev~V~S~eE~~~lL~~G~~n 403 (822)
.. ...+.|.|+|||+|||||+|+|||++.. .+.+++++ .|++|.|++++.|.|++|++.+|..|.++
T Consensus 179 ~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~ 258 (403)
T 4etp_A 179 KLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKL 258 (403)
T ss_dssp HHHTTTEEEEEEEEEEEEETTEEEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--
T ss_pred hhhccCceEEEEEEEEEEecceeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHh
Confidence 64 3356899999999999999999998643 45677664 37999999999999999999999999999
Q ss_pred CcccccCCCCCCCCceeEEEEEEEEEeecCCCceeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHH
Q 003413 404 RTTEPTRANETSSRSHAILQVIIEYRVKDASMNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCIN 483 (822)
Q Consensus 404 R~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ 483 (822)
|.+++|.||..|||||+||+|+|.......+ ....|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.
T Consensus 259 R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~---~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~ 335 (403)
T 4etp_A 259 RSTASTASNEHSSRSHSIFIIHLSGSNAKTG---AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIH 335 (403)
T ss_dssp C----CHHHHHHHTSEEEEEEEEEEEETTTC---CEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCcccCCcccEEEEEEEEeecCCC---CeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988765443 2467999999999999999999999999999999999999999999
Q ss_pred HHhcCC---CCCCccCchhhhhhhhccCCCceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhhccc
Q 003413 484 ALVEGK---KHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKE 546 (822)
Q Consensus 484 ALa~~~---~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk~ 546 (822)
+|+++. .||||||||||+||||+|||||+|+|||||||+..+++||++||+||+|++.|+..+
T Consensus 336 aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~ 401 (403)
T 4etp_A 336 ALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 401 (403)
T ss_dssp HHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC----
T ss_pred HHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCC
Confidence 998765 499999999999999999999999999999999999999999999999999998765
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=1.4e-82 Score=693.70 Aligned_cols=310 Identities=30% Similarity=0.456 Sum_probs=247.4
Q ss_pred CCCCCeEEEEEcCCCCchhhhcCCceEEEEec---CceeEEeeccCcchhhhhcccCCeeeEeccccCCCCchhHHhhhh
Q 003413 208 PSGSRILVFVRLRPMSKKEKESGSRCCVRIVN---KRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDSTSQHEVYSRT 284 (822)
Q Consensus 208 ~~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~---~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~asQeeVF~~~ 284 (822)
...++|+|+|||||+++.|. .+...+|.+.. +..+. ...+.|.||+||+++++|++||+.+
T Consensus 19 ~~~~~VrV~vRvRP~~~~e~-~~~~~~v~~~~~~~~~~~~---------------~~~~~F~FD~Vf~~~~sQ~~Vy~~~ 82 (344)
T 3dc4_A 19 AKLSAVRIAVREAPYRQFLG-RREPSVVQFPPWSDGKSLI---------------VDQNEFHFDHAFPATISQDEMYQAL 82 (344)
T ss_dssp CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEE---------------ETTEEEECSEEECTTCCHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCcccc-cCCceEEEecCCCCCceEE---------------ecCcEEEcceEECCCCCHHHHHHhh
Confidence 35688999999999998773 34555565543 12221 2357999999999999999999999
Q ss_pred HHHHHHHHHcCCCceeeeeccCCCCcceeecccC------CCCchHHHHHHHHHHhhhhcCCC--CcEEEEEEEEEEecc
Q 003413 285 TADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTI------ENPGVMVLAIKDLFTKIRQRSCD--GNHVVHLSYLEVYNE 356 (822)
Q Consensus 285 v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~------e~~GIIpRal~~LF~~i~~~~~~--~~~~V~vS~lEIYNE 356 (822)
+.|+|+++|+|||+||||||||||||||||+|+. +++|||||++++||+.+...... ..|.|+|||+|||||
T Consensus 83 ~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE 162 (344)
T 3dc4_A 83 ILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNE 162 (344)
T ss_dssp THHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESS
T ss_pred ccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCC
Confidence 9999999999999999999999999999999874 56799999999999999765433 468999999999999
Q ss_pred eeeecCCCCCCceEeeCCCCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCCc
Q 003413 357 TVRDLLSPGRPLVLREDKQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASMN 436 (822)
Q Consensus 357 ~V~DLL~p~~~L~ired~~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~~ 436 (822)
+|+|||++....... +..+.|++++.|.|.+|++.+|..|.++|++++|.||..|||||+||+|.|+..
T Consensus 163 ~i~DLL~~~~~~~~~----~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------- 231 (344)
T 3dc4_A 163 KPFDLLGSTPHMPMV----AARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK------- 231 (344)
T ss_dssp CEEETTSSCTTSBCC----SSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS-------
T ss_pred eeEEccCCCCCCccc----cccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec-------
Confidence 999999976543221 234568999999999999999999999999999999999999999999999631
Q ss_pred eeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhccCCCceeeEE
Q 003413 437 IINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMI 516 (822)
Q Consensus 437 ~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDSLGGnskT~mI 516 (822)
...|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.++.||||||||||+||||+|||||+|+||
T Consensus 232 --~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI 309 (344)
T 3dc4_A 232 --THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFL 309 (344)
T ss_dssp --SCEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEEEE
T ss_pred --CcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEEEE
Confidence 246899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhhhhhccc
Q 003413 517 ANISPCNLSFGETQNTLHWADRAKEIRTKE 546 (822)
Q Consensus 517 a~ISPs~~~~eETLsTLrFA~Rak~Iknk~ 546 (822)
|||||+..+++||++||+||+||+.....+
T Consensus 310 a~isP~~~~~~ETlsTL~fA~ra~~~~~~~ 339 (344)
T 3dc4_A 310 ACISPHQCDLSETLSTLRFGTSAKAAALEH 339 (344)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEeCCchhhHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999886655
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=4.6e-77 Score=704.13 Aligned_cols=322 Identities=33% Similarity=0.505 Sum_probs=251.0
Q ss_pred CCCCCeEEEEEcC----CCCchhhhcCCceEEEEe--------cCceeEEeeccCcchhhhhcccCCeeeEeccccCCCC
Q 003413 208 PSGSRILVFVRLR----PMSKKEKESGSRCCVRIV--------NKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDST 275 (822)
Q Consensus 208 ~~~~~IrV~VRVR----Pl~~~E~~~g~~~~V~v~--------~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~a 275 (822)
...++++|||||| |.+..|.+.|...+ .+. ....|+++..... ....+.|+||+||++++
T Consensus 371 ~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~f~fd~vf~~~~ 442 (715)
T 4h1g_A 371 ALKGNIRVFCRIRNVSSSSSSSSSSSSEDII-QYEAPQDINDESKQELVITRNINN-------NFSNLRFLFDKIFEREQ 442 (715)
T ss_dssp SSSCSEEEEEEECCCC-------------BC-EEECCC-------CEEEEEEEETT-------EEEEEEEECSEEECSSC
T ss_pred HHHhcCeEEEEEeccccccccccccccccce-eccCCCCCCCCCCCeEEEcCCCCC-------CCCCeEEEeceEeCCCC
Confidence 3567899999999 55555544443322 222 1223444332211 23568999999999999
Q ss_pred chhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcC-CCCcEEEEEEEEEEe
Q 003413 276 SQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRS-CDGNHVVHLSYLEVY 354 (822)
Q Consensus 276 sQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~-~~~~~~V~vS~lEIY 354 (822)
+|++||+. +.|+|+++|+|||+||||||||||||||||+|. ++|||||++++||+.|.... ....|.|+|||+|||
T Consensus 443 ~q~~v~~~-~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiy 519 (715)
T 4h1g_A 443 SNDLVFEE-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIY 519 (715)
T ss_dssp CHHHHGGG-THHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEE
T ss_pred CHHHHHHH-HHHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEE
Confidence 99999986 569999999999999999999999999999994 68999999999999997643 345799999999999
Q ss_pred cceeeecCCCC----CCceEeeCC-C-CeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEE
Q 003413 355 NETVRDLLSPG----RPLVLREDK-Q-GILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEY 428 (822)
Q Consensus 355 NE~V~DLL~p~----~~L~ired~-~-Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~ 428 (822)
||+|+|||++. ..+.++++. . +++|.||+++.|.|.+|++.+|..|.++|++++|.+|..|||||+||+|+|++
T Consensus 520 ne~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~ 599 (715)
T 4h1g_A 520 NEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQG 599 (715)
T ss_dssp TTEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEE
T ss_pred CCEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEE
Confidence 99999999864 346666653 3 59999999999999999999999999999999999999999999999999988
Q ss_pred EeecCCCceeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcC-CCCCCccCchhhhhhhhcc
Q 003413 429 RVKDASMNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEG-KKHIPYRNSKLTQLLKDSL 507 (822)
Q Consensus 429 ~~~~~~~~~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~-~~hIPYRdSKLTrLLqDSL 507 (822)
...... ....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+ ..|||||||||||||||||
T Consensus 600 ~~~~~~---~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~sl 676 (715)
T 4h1g_A 600 YNSLTK---ESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSL 676 (715)
T ss_dssp EETTTC---CEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGT
T ss_pred EecCCC---CEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhc
Confidence 765443 346799999999999999999999999999999999999999999999865 4799999999999999999
Q ss_pred CCCceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhh
Q 003413 508 GGACNTVMIANISPCNLSFGETQNTLHWADRAKEIR 543 (822)
Q Consensus 508 GGnskT~mIa~ISPs~~~~eETLsTLrFA~Rak~Ik 543 (822)
||||+|+|||||||+..+++||++||+||+|||+|+
T Consensus 677 ggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 677 GGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp STTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred CCCceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 999999999999999999999999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.95 E-value=2.3e-29 Score=229.64 Aligned_cols=97 Identities=42% Similarity=0.642 Sum_probs=87.3
Q ss_pred HhhhhhHHHHHHHHHHHhcC-CCCCCccCchhhhhhhhccCCCceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhhcccc
Q 003413 469 ANINRSLLALSSCINALVEG-KKHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKEG 547 (822)
Q Consensus 469 ~~INkSLsaLg~VI~ALa~~-~~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk~~ 547 (822)
.+||+||++||+||.+|+++ ..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||+.|+++|.
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~ 81 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 81 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEEC
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcce
Confidence 57999999999999999987 58999999999999999999999999999999999999999999999999999999995
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHH
Q 003413 548 EANEETLQVPDSGTDQAKLLLELQKEN 574 (822)
Q Consensus 548 ~~ne~~~~~~~~~~d~~~li~eLq~Ei 574 (822)
+|++.. ...++++|++|+
T Consensus 82 -~n~~~~--------~~~l~~~~~~e~ 99 (100)
T 2kin_B 82 -VNLELT--------AEEWKKKYEKEK 99 (100)
T ss_dssp -CEEECC--------HHHHHHHHHHHH
T ss_pred -eccCCC--------HHHHHHHHHHhh
Confidence 565532 246777777765
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.94 E-value=1.6e-27 Score=223.52 Aligned_cols=111 Identities=37% Similarity=0.581 Sum_probs=89.9
Q ss_pred hhhHHHHHHHHHHHhcCC-CCCCccCchhhhhhhhccCCCceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhhccccccc
Q 003413 472 NRSLLALSSCINALVEGK-KHIPYRNSKLTQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKEGEAN 550 (822)
Q Consensus 472 NkSLsaLg~VI~ALa~~~-~hIPYRdSKLTrLLqDSLGGnskT~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk~~~~n 550 (822)
|+||++||+||.+|++++ .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||+.|+|++. +|
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~-~n 79 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS-VN 79 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEEC-CC
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCce-ec
Confidence 899999999999999975 6999999999999999999999999999999999999999999999999999999995 55
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 551 EETLQVPDSGTDQAKLLLELQKENRELRVQMARQQQRL 588 (822)
Q Consensus 551 e~~~~~~~~~~d~~~li~eLq~Ei~~Lr~eL~~~q~~i 588 (822)
++.. .......+.+..++++.|+.+++.++.++
T Consensus 80 ~~~~-----~~~l~~~~~~e~~~~~~L~~~i~~Le~el 112 (117)
T 3kin_B 80 LELT-----AEEWKKKYEKEKEKNKALKSVIQHLEVEL 112 (117)
T ss_dssp BCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 12223334444455555666665555443
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.3e-26 Score=239.52 Aligned_cols=273 Identities=10% Similarity=0.096 Sum_probs=179.0
Q ss_pred chhhhccCcccccCCCCCCCCCeEEEEEcCCCC-chhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEecc
Q 003413 191 KNMQELEKPEAVLGKHVPSGSRILVFVRLRPMS-KKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDA 269 (822)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~~~~~IrV~VRVRPl~-~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~ 269 (822)
..|+.|+|. +++.+|+|||||||||.. + ..+.|.+.+.. +.+ .. ..+.|.||+
T Consensus 10 ~~RRkL~Ns------I~ELKGnIRVFcrvrp~~~p------~~~~v~y~~~~-I~v-~~------------~~k~f~FDR 63 (298)
T 2o0a_A 10 LRSRRLENS------IIEQKGTMRCYAYVMEQNLP------ENLLFDYENGV-ITQ-GL------------SEHVYKFNR 63 (298)
T ss_dssp HHHHHHHHH------HHHHHTCCEEEEEECGGGSC------TTEEEETTTTE-EEE-TT------------TCCEEECSE
T ss_pred HHHHHHHhH------HHHhhCceEEEEEeccccCC------ccceeecCccc-eee-cC------------CCceEEeee
Confidence 345555554 556789999999999954 3 22334443322 322 10 127899999
Q ss_pred ccCCCCchh--HHhhhhHHHHHHHHHc-CCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhh-cCCCCcEE
Q 003413 270 SFPDSTSQH--EVYSRTTADLVEAVLQ-GRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQ-RSCDGNHV 345 (822)
Q Consensus 270 VF~~~asQe--eVF~~~v~pLV~svL~-GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~-~~~~~~~~ 345 (822)
||++.+.|+ +||++ +.++|+++|+ |||+||||||||||||| ||++..+|..... .. +.|.
T Consensus 64 Vf~p~s~Qe~~~vf~E-~~~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~~--~~Y~ 127 (298)
T 2o0a_A 64 VIPHLKVSEDKFFTQE-YSVYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIKFLAEKDTIYQ--KQYV 127 (298)
T ss_dssp EEETTTSCHHHHHHHT-THHHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHHH--HHEE
T ss_pred EECccccccHHHHHHH-HHHHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhcc--cceE
Confidence 999999999 99987 8999999999 99999999999999999 9999999987643 22 7899
Q ss_pred EEEEEEEEe-cceeeecCCCC---CCceEeeCC-CCeEecCcEEEEcCC-HHHHHHHHHhhhccCcccccCCCCCCCCce
Q 003413 346 VHLSYLEVY-NETVRDLLSPG---RPLVLREDK-QGILAAGLTQYRAYS-TDEVMALLQRGNQNRTTEPTRANETSSRSH 419 (822)
Q Consensus 346 V~vS~lEIY-NE~V~DLL~p~---~~L~ired~-~Gv~V~gLtev~V~S-~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH 419 (822)
+.+||+||| ||.++|||... ..+.|+.+. ++.+|.|++.+.|.+ .+|+..++.-+..- ..|. +.-
T Consensus 128 ~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~------~~~~---~gi 198 (298)
T 2o0a_A 128 ITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEHP------NLPH---SGM 198 (298)
T ss_dssp EEEEEEEEECC-CEEETTSCCC------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEE
T ss_pred EEEEEEEEecCCchHHhcCCCCCCCcceEEecCCCCEEecccEEEEccccHHHHHHHhhccccc------ccCC---CCc
Confidence 999999999 99999999632 235666654 467899999999999 89988877322211 1111 234
Q ss_pred eEEEEEEEEEeecCCCceeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchh
Q 003413 420 AILQVIIEYRVKDASMNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKL 499 (822)
Q Consensus 420 ~IftI~V~~~~~~~~~~~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKL 499 (822)
.|+.+.+..+.....++.....--++|+.+.-.. +...|.+.+ ..+ -+-.|++
T Consensus 199 ~i~k~~~~~~~~~~~~~~~~~~~d~yf~e~~~~~--------------------~~~~l~~~~---~~~----~~~~spi 251 (298)
T 2o0a_A 199 GIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNLK--------------------SIEQFDKSI---FKK----ESCETPI 251 (298)
T ss_dssp EEEEEEEEESCC-------CCCEEEEEEEECSHH--------------------HHHHHHHHH---HTC-----CCCSHH
T ss_pred eEEEEEEecCcccccccCCCCceEEEEEEeCCHH--------------------HHHHHHhhc---ccc----cccCCcH
Confidence 5555555442222112211112246777665211 122333322 222 3456888
Q ss_pred hhhhhhccCCCceeeEEEeeCCCCCCHHHHHHHHHHHHHhhhhhccc
Q 003413 500 TQLLKDSLGGACNTVMIANISPCNLSFGETQNTLHWADRAKEIRTKE 546 (822)
Q Consensus 500 TrLLqDSLGGnskT~mIa~ISPs~~~~eETLsTLrFA~Rak~Iknk~ 546 (822)
+-+|+.-|. ..|.++++++.-.. +.-.-|..++++..++|..
T Consensus 252 ~~il~~ll~-~tks~~~~~l~~~~----~~~~lL~~s~~i~~~~~~~ 293 (298)
T 2o0a_A 252 ALVLKKLIS-DTKSFFLLNLNDSK----NVNKLLTISEEVQTQLCKR 293 (298)
T ss_dssp HHHHHHHHH-HSBCEEEEEECCGG----GHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHh-cCcceEEEEecCCC----chhHHHHHHHHhhcccCcc
Confidence 888887664 46888999997543 3334789999999888754
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.13 E-value=0.014 Score=56.15 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=35.4
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.++||.....+..|.++++ .+..+++++--.....++-||++|+|||+.+
T Consensus 6 ~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALL-TIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHH-HHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred hCccccccCCCHHHHHHHH-HHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 4678887665567888886 4555665543333456788999999999987
No 33
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.62 E-value=0.047 Score=53.22 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=33.6
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHHHHHcCCC-ceeeeeccCCCCcceee
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRN-GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN-~tIfAYGQTGSGKTyTM 314 (822)
.++||.....+..+..+++. +..++...-.++. ..|+-||++|+|||+.+
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 56788766555566667763 4445544322222 67899999999999986
No 34
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.00 E-value=0.082 Score=56.27 Aligned_cols=50 Identities=26% Similarity=0.489 Sum_probs=32.9
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.++||........+..++. .+..+++..-.+....|+-||++|+||||.+
T Consensus 120 ~~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHH
T ss_pred hCCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHH
Confidence 3577775544335556665 3445555443333567889999999999987
No 35
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=84.71 E-value=0.37 Score=44.88 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..++..+..+....|+-||++|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 344555555566678999999999999887
No 36
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=83.93 E-value=0.49 Score=48.03 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=31.7
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHH-----HHHHcCCCceeeeeccCCCCcceee
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLV-----EAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV-----~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..+.|+.+.+.+...+.+.+ .+..+- ..+-......|+-||++|+|||+.+
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHH-HHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHH-HHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 35778998887665555554 222211 1111123445899999999999876
No 37
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.09 E-value=2.3 Score=47.73 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=52.0
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHH-HHHc--CC--CceeeeeccCCCCcceeec--------------cc---CCC
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVE-AVLQ--GR--NGSVFCYGATGAGKTYTML--------------GT---IEN 320 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~-svL~--Gy--N~tIfAYGQTGSGKTyTM~--------------G~---~e~ 320 (822)
..-+||.|-+-+.--+++.+.+..|+.. ..+. |. --.|+-||+.|+|||++.- |+ ...
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~ 255 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMY 255 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSC
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcc
Confidence 3457888888765556666666766653 3333 32 3468999999999997542 11 123
Q ss_pred CchHHHHHHHHHHhhhhcC
Q 003413 321 PGVMVLAIKDLFTKIRQRS 339 (822)
Q Consensus 321 ~GIIpRal~~LF~~i~~~~ 339 (822)
.|--.+.++.+|.......
T Consensus 256 vGese~~ir~lF~~A~~~a 274 (434)
T 4b4t_M 256 IGEGAKLVRDAFALAKEKA 274 (434)
T ss_dssp SSHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHhcC
Confidence 5788899999998776654
No 38
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=82.38 E-value=0.7 Score=49.83 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=19.3
Q ss_pred HcCCCceeeeeccCCCCcceee
Q 003413 293 LQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 293 L~GyN~tIfAYGQTGSGKTyTM 314 (822)
-.|...+|+.||++|+|||.++
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHHH
Confidence 3677889999999999999886
No 39
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=81.88 E-value=0.45 Score=44.48 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..++..+..+....|+.||++|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 31 IRRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 344555555566778899999999999876
No 40
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=81.32 E-value=0.47 Score=49.76 Aligned_cols=37 Identities=14% Similarity=0.288 Sum_probs=24.4
Q ss_pred hHHhhhhHHHHHHHHHc--CCC--ceeeeeccCCCCcceee
Q 003413 278 HEVYSRTTADLVEAVLQ--GRN--GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 278 eeVF~~~v~pLV~svL~--GyN--~tIfAYGQTGSGKTyTM 314 (822)
..+.+.++..++.+.+. |.. ..|+-||++|+|||+..
T Consensus 13 ~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 34555556566665543 222 36788999999999865
No 41
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=80.74 E-value=0.6 Score=47.51 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=21.8
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.|+||.+.+.+..-..+.+ .+..+. ..+..|+-||.+|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~-----~~~~~~-~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLE-----QVSHLA-PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHH-----HHHHHT-TSCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHH-----HHHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 3788888764332222222 223332 34567889999999999865
No 42
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=79.52 E-value=0.62 Score=48.84 Aligned_cols=45 Identities=22% Similarity=0.401 Sum_probs=29.7
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
...|+|+.+++. +.+... +...++.+....|+-||++|+|||+..
T Consensus 18 ~~~~~f~~i~G~----~~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 18 RPVFPFSAIVGQ----EDMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCCGGGSCSC----HHHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCCchhccCh----HHHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 346889998764 333322 233344444456999999999999875
No 43
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=79.31 E-value=0.52 Score=48.20 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=31.0
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHH-----HHHcCCCceeeeeccCCCCcceee
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVE-----AVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~-----svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..++||.+.+.+..-+.+.+.+..++.. ..--.....|+-||++|+|||+.+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3578888887644444444333322211 110134456999999999999875
No 44
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=78.56 E-value=0.65 Score=48.71 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=30.5
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHH-HHHc----CCCceeeeeccCCCCcceee
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVE-AVLQ----GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~-svL~----GyN~tIfAYGQTGSGKTyTM 314 (822)
.++||.|.+.+..-+.+.+.+..|+.. ..+. .....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 466788777544444444443333211 1111 23457999999999999876
No 45
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=78.50 E-value=1.1 Score=43.84 Aligned_cols=44 Identities=16% Similarity=0.390 Sum_probs=27.2
Q ss_pred eEeccccCCCCchhHHhhhhHHHHHHHHH-cCCCceeeeeccCCCCcceee
Q 003413 265 FTFDASFPDSTSQHEVYSRTTADLVEAVL-QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 265 F~FD~VF~~~asQeeVF~~~v~pLV~svL-~GyN~tIfAYGQTGSGKTyTM 314 (822)
++||.++.. ..+..++.. +..++ .+....|+-||++|+|||+.+
T Consensus 25 ~~~~~~~~~-~~~~~~~~~-----l~~~~~~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGA-----LKSAASGDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSTTTSCC---CCHHHHHH-----HHHHHHTCSCSEEEEECSTTSSHHHHH
T ss_pred CChhhccCC-CCCHHHHHH-----HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 567766552 233444432 23333 335678999999999999876
No 46
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.07 E-value=18 Score=33.84 Aligned_cols=35 Identities=9% Similarity=0.251 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003413 645 EGFRELQQTVKTLEAEIEKMKKDHALQLKQKDDVI 679 (822)
Q Consensus 645 e~~~el~~~~k~le~ele~~~~~~~~ql~~k~~li 679 (822)
..+...+..+..+|.++..++.++..++.+...++
T Consensus 77 ~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll 111 (131)
T 3tnu_A 77 MQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILL 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888899999999999999888877766654
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.05 E-value=3.6 Score=46.93 Aligned_cols=29 Identities=31% Similarity=0.330 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 566 LLLELQKENRELRVQMARQQQRLLALEAQ 594 (822)
Q Consensus 566 li~eLq~Ei~~Lr~eL~~~q~~i~~le~q 594 (822)
.+.+++.++..|+.++.+.++.+...+.+
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~ 485 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAE 485 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655554444433
No 48
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=77.70 E-value=0.46 Score=48.02 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=28.6
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHH-HHHHcCC----CceeeeeccCCCCcceee
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLV-EAVLQGR----NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV-~svL~Gy----N~tIfAYGQTGSGKTyTM 314 (822)
..++||.+.+.+....++-+ +...+- ..++.++ ...|+-||++|+|||+.+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 35788888765433233322 221110 1223322 223899999999999887
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=77.55 E-value=0.81 Score=48.02 Aligned_cols=48 Identities=23% Similarity=0.451 Sum_probs=29.7
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHHHHHcC-CCceeeeeccCCCCcceee
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVEAVLQG-RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~G-yN~tIfAYGQTGSGKTyTM 314 (822)
..|+||..+.. ..+...+.. +..++.. .| ....++-||++|+|||+.+
T Consensus 6 ~~~~f~~fv~g-~~~~~a~~~-~~~~~~~--~~~~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 6 PKYTLENFIVG-EGNRLAYEV-VKEALEN--LGSLYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp TTCCSSSCCCC-TTTHHHHHH-HHHHHHT--TTTSCSSEEEECSSSSSHHHHH
T ss_pred CCCCcccCCCC-CcHHHHHHH-HHHHHhC--cCCCCCeEEEECCCCCcHHHHH
Confidence 35788887632 334444543 3333332 12 2346899999999999987
No 50
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.07 E-value=2.9 Score=46.91 Aligned_cols=76 Identities=22% Similarity=0.335 Sum_probs=48.3
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHH-HHHc--CC--CceeeeeccCCCCcceeec--------------cc---CCCC
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVE-AVLQ--GR--NGSVFCYGATGAGKTYTML--------------GT---IENP 321 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~-svL~--Gy--N~tIfAYGQTGSGKTyTM~--------------G~---~e~~ 321 (822)
.-+||.|-+-+.--+++.+.+..|+.. ..+. |. .-.|+-||+.|+|||++.- |+ ....
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSC
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcccc
Confidence 456788877654444455544445432 2333 33 3359999999999997542 21 1235
Q ss_pred chHHHHHHHHHHhhhhcC
Q 003413 322 GVMVLAIKDLFTKIRQRS 339 (822)
Q Consensus 322 GIIpRal~~LF~~i~~~~ 339 (822)
|--.+.++++|.......
T Consensus 248 Ge~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 248 GEGPRMVRDVFRLARENA 265 (428)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHcC
Confidence 888899999999876543
No 51
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=74.76 E-value=1.3 Score=42.23 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=16.7
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
.+....++-||++|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 444445999999999999876
No 52
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=73.90 E-value=1.8 Score=44.23 Aligned_cols=21 Identities=29% Similarity=0.183 Sum_probs=17.9
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 456678999999999999875
No 53
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=73.58 E-value=1.3 Score=43.42 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=18.3
Q ss_pred HHHHHcCCCceeeeeccCCCCccee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyT 313 (822)
+..+++|.| ++..++||||||.+
T Consensus 45 i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 45 IMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 445667866 68889999999987
No 54
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.54 E-value=7.1 Score=43.97 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=48.8
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHH-HHHc--C--CCceeeeeccCCCCcceee--------------ccc---CCCC
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVE-AVLQ--G--RNGSVFCYGATGAGKTYTM--------------LGT---IENP 321 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~-svL~--G--yN~tIfAYGQTGSGKTyTM--------------~G~---~e~~ 321 (822)
.-+||.|-+-+.--+++.+.+..|+.. ..+. | .--.|+-||+.|+|||.+. -|+ ....
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~v 257 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYL 257 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSS
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccC
Confidence 456777776544444555555555432 2333 3 3357999999999999654 222 1235
Q ss_pred chHHHHHHHHHHhhhhcC
Q 003413 322 GVMVLAIKDLFTKIRQRS 339 (822)
Q Consensus 322 GIIpRal~~LF~~i~~~~ 339 (822)
|--.+.++.+|.......
T Consensus 258 Gesek~ir~lF~~Ar~~a 275 (437)
T 4b4t_I 258 GDGPRLCRQIFKVAGENA 275 (437)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHhcC
Confidence 888999999999876644
No 55
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=73.53 E-value=0.79 Score=47.22 Aligned_cols=52 Identities=12% Similarity=0.220 Sum_probs=30.5
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHH-HHHc---CCCceeeeeccCCCCcceee
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVE-AVLQ---GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~-svL~---GyN~tIfAYGQTGSGKTyTM 314 (822)
....||.+.+.+..-+.+.+.+..|+.. ..+. .....|+-||++|+|||+.+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3567888877543333333333333221 1112 23567999999999999875
No 56
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=72.87 E-value=1.4 Score=42.63 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=17.8
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..+++|.| ++..++||||||.+.
T Consensus 34 i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 34 IPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHccCCC--EEEECCCCCchHHHH
Confidence 345567766 677889999999654
No 57
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.67 E-value=18 Score=33.74 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003413 644 PEGFRELQQTVKTLEAEIEKMKKDHALQLKQKDDVI 679 (822)
Q Consensus 644 ee~~~el~~~~k~le~ele~~~~~~~~ql~~k~~li 679 (822)
+..+..++..+..+|.++..++.++..++.+...++
T Consensus 74 ~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 109 (129)
T 3tnu_B 74 ELALKDARNKLAELEEALQKAKQDMARLLREYQELM 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 335777888899999999999999888877766664
No 58
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=72.47 E-value=0.72 Score=47.48 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=28.2
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHH-HHHHcCC----CceeeeeccCCCCcceee
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLV-EAVLQGR----NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV-~svL~Gy----N~tIfAYGQTGSGKTyTM 314 (822)
..++||.+.+.+....++.+ ++..+- ..++.++ ...|+-||++|+|||+.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 35778888765433232222 221110 1223322 223899999999999886
No 59
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.41 E-value=1.1 Score=50.40 Aligned_cols=51 Identities=27% Similarity=0.346 Sum_probs=33.4
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHH-HHHc--CC--CceeeeeccCCCCcceee
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVE-AVLQ--GR--NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~-svL~--Gy--N~tIfAYGQTGSGKTyTM 314 (822)
..+||.|-+-+.--+++.+.+.-|+.. ..+. |. .-.|+-||+.|+|||++.
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 467888877654445555555555542 3333 32 346999999999998764
No 60
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=72.40 E-value=0.67 Score=48.85 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=17.1
Q ss_pred CCCceeeeeccCCCCcceee
Q 003413 295 GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 295 GyN~tIfAYGQTGSGKTyTM 314 (822)
+...+|+-||++|+|||+++
T Consensus 42 ~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 45568999999999999886
No 61
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=72.21 E-value=1.5 Score=42.22 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=18.0
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..+++|.+ ++..++||||||.+.
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHHH
Confidence 345567766 677889999999873
No 62
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=71.06 E-value=33 Score=32.02 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccccCCccccccCCccChhhhhc
Q 003413 562 DQAKLLLELQKENRELRVQMARQQQRLLALEAQALAANSPTPSSVSSLLTPPSTAHPNEKRKPRSSFLHGNCFTPELKRK 641 (822)
Q Consensus 562 d~~~li~eLq~Ei~~Lr~eL~~~q~~i~~le~q~~a~~~~~~s~~~~~~~~~~~~~~~e~~k~~~~~l~~~~~~~e~k~~ 641 (822)
+.+.+|..|+.|+..|+.++.....+
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~~E------------------------------------------------------ 37 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMKTE------------------------------------------------------ 37 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------------
Confidence 44678999999999999988765421
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 003413 642 VAPEGFRELQQTVKTLEAEIEKMKKDHALQLKQKDDVIRELKRKSD 687 (822)
Q Consensus 642 ~~ee~~~el~~~~k~le~ele~~~~~~~~ql~~k~~li~el~~~~~ 687 (822)
+...+.+|..++..|+.+++.-+......+.+.+.+..++.....
T Consensus 38 -~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 38 -SQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122366788888999999988776655556667777767665543
No 63
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=70.81 E-value=0.85 Score=49.11 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=29.0
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHHHH----HcCCCceeeeeccCCCCcceee
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVEAV----LQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~sv----L~GyN~tIfAYGQTGSGKTyTM 314 (822)
...||.+.+.+..-+.+.+.+..|+...- +.+....|+-||++|+|||+.+
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 45677777643322333332222221110 2345567999999999999876
No 64
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=70.43 E-value=1.8 Score=48.11 Aligned_cols=48 Identities=25% Similarity=0.501 Sum_probs=28.5
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..|+||..... .++...+. .+..++.. .|....+|-||++|+|||+.+
T Consensus 100 ~~~tfd~fv~g-~~n~~a~~-~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 100 PDYTFENFVVG-PGNSFAYH-AALEVAKH--PGRYNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp TTCSGGGCCCC-TTTHHHHH-HHHHHHHS--TTSSCCEEEECSSSSSHHHHH
T ss_pred CCCChhhcCCC-CchHHHHH-HHHHHHhC--CCCCCeEEEECCCCCCHHHHH
Confidence 46888875532 23333443 23333322 221346899999999999987
No 65
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.17 E-value=2.9 Score=46.65 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=34.5
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHH-HHHc--CC--CceeeeeccCCCCcceee
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVE-AVLQ--GR--NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~-svL~--Gy--N~tIfAYGQTGSGKTyTM 314 (822)
.-+||.|-+-+.--+++-+.+.-|+.. ..+. |. .-.|+-||+.|+|||.+.
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 356788877655556666666666653 3343 33 346999999999998654
No 66
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=70.05 E-value=2.3 Score=44.95 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=28.2
Q ss_pred eEeccccCCCCchhHHhhhhHHHHHHHHHcCCC-c--eeeeeccCCCCcceee
Q 003413 265 FTFDASFPDSTSQHEVYSRTTADLVEAVLQGRN-G--SVFCYGATGAGKTYTM 314 (822)
Q Consensus 265 F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN-~--tIfAYGQTGSGKTyTM 314 (822)
|.++.+++ +++..+. +...+..++.|.. . +++-||++|+|||+++
T Consensus 14 ~~p~~l~g----r~~~~~~-l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 14 YVPKRLPH----REQQLQQ-LDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp CCCSCCTT----CHHHHHH-HHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred cCCCCCCC----hHHHHHH-HHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 44444443 3444443 3344555555543 4 6899999999999886
No 67
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=69.53 E-value=1.8 Score=45.75 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=31.7
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCc--eeeeeccCCCCcceee
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNG--SVFCYGATGAGKTYTM 314 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~--tIfAYGQTGSGKTyTM 314 (822)
.+.||.+.+. +.+.. .+..++..+..|... .|+-||++|+|||+..
T Consensus 40 ~~~~~~ivG~----~~~~~-~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVGQ----LAARR-AAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEESC----HHHHH-HHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccCh----HHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 4567777764 34433 244455666667654 8999999999999876
No 68
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=68.90 E-value=1.9 Score=42.97 Aligned_cols=23 Identities=35% Similarity=0.696 Sum_probs=18.3
Q ss_pred HHHHHcCCCceeeeeccCCCCccee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyT 313 (822)
+..+++|.+ ++..++||||||.+
T Consensus 60 i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 60 IPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHH
Confidence 455667877 68889999999986
No 69
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=68.04 E-value=1.3 Score=44.41 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=19.0
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.+..+++|.| ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3445667876 678899999999773
No 70
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.69 E-value=2.3 Score=44.94 Aligned_cols=41 Identities=34% Similarity=0.554 Sum_probs=25.4
Q ss_pred EeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 266 TFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 266 ~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.|+.+++ |+.+.+ .+-..+-.|.-..++-||+.|+|||+++
T Consensus 23 ~~~~~~g----~~~~~~----~L~~~i~~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 23 TLDEVYG----QNEVIT----TVRKFVDEGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp SGGGCCS----CHHHHH----HHHHHHHTTCCCCEEEECSSSSSHHHHH
T ss_pred cHHHhcC----cHHHHH----HHHHHHhcCCCceEEEECCCCCCHHHHH
Confidence 3566664 444443 3333333553333788999999999987
No 71
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=67.62 E-value=1.2 Score=47.32 Aligned_cols=50 Identities=12% Similarity=0.264 Sum_probs=29.1
Q ss_pred eEeccccCCCCchhHHhhhhHHHHHH-HHHcCC---CceeeeeccCCCCcceee
Q 003413 265 FTFDASFPDSTSQHEVYSRTTADLVE-AVLQGR---NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 265 F~FD~VF~~~asQeeVF~~~v~pLV~-svL~Gy---N~tIfAYGQTGSGKTyTM 314 (822)
.+||.|.+.+.--+.+.+.+..|+-. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 46777776543333343333333321 223332 246899999999999876
No 72
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=66.57 E-value=2.3 Score=42.15 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=18.1
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..+++|.+ ++..++||||||.+.
T Consensus 56 i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 56 IGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 345667876 567789999999863
No 73
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=66.45 E-value=1.9 Score=44.36 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=16.4
Q ss_pred CCCceeeeeccCCCCcceee
Q 003413 295 GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 295 GyN~tIfAYGQTGSGKTyTM 314 (822)
.....|+-||++|+|||++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34446999999999999875
No 74
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=66.37 E-value=1.1 Score=45.36 Aligned_cols=47 Identities=28% Similarity=0.289 Sum_probs=28.6
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHHHHHc---------CCCceeeeeccCCCCcceee
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVEAVLQ---------GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~svL~---------GyN~tIfAYGQTGSGKTyTM 314 (822)
..+.|+.+.+.+..-+.+. .++..+.. .....|+-||++|+|||+.+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVA-----ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTH-----HHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCHHHhcCcHHHHHHHH-----HHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 3567888877543333333 23332211 23446899999999999876
No 75
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=66.23 E-value=2.1 Score=41.91 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=18.1
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..+++|.| ++..++||||||.+.
T Consensus 45 i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 45 IPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCchhhhh
Confidence 445667876 667789999999764
No 76
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=66.15 E-value=2 Score=43.97 Aligned_cols=25 Identities=32% Similarity=0.662 Sum_probs=18.7
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
++..++.|.| +++.++||||||.+.
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHHH
Confidence 3445567766 678899999999763
No 77
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=65.95 E-value=2.2 Score=47.63 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=21.3
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
++..++..-...|...|+||||||.||
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 445555555678899999999999998
No 78
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=65.76 E-value=0.8 Score=47.74 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=26.3
Q ss_pred eEeccccCCCCchhHHhhhhHHHHHH-HHHcCCC----ceeeeeccCCCCcceee
Q 003413 265 FTFDASFPDSTSQHEVYSRTTADLVE-AVLQGRN----GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 265 F~FD~VF~~~asQeeVF~~~v~pLV~-svL~GyN----~tIfAYGQTGSGKTyTM 314 (822)
.+||.|-+.+.--+.+.+.++.|+-. .++.+++ ..|+-||+.|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 45666655443334444444444432 3344333 23899999999999876
No 79
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=64.86 E-value=1.2 Score=43.00 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=17.3
Q ss_pred HHHHcCCCceeeeeccCCCCcceee
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..+++|.+ ++..++||+|||++.
T Consensus 43 ~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 43 QPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCCHHHHH
Confidence 34456655 577899999999876
No 80
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=64.18 E-value=2.2 Score=46.42 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=20.3
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+.+++.--.+.|...|+||||||.+|
T Consensus 115 l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 115 FKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 34445555568899999999999998
No 81
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=64.13 E-value=3 Score=46.42 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=32.0
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHHHHHcCCC--ceeeeeccCCCCcceee
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRN--GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN--~tIfAYGQTGSGKTyTM 314 (822)
.+.||.+.+ |+++.+. +..+++.+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~-l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREA-CGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHH-HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 466777765 4555543 4456677777754 36888999999999865
No 82
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=63.94 E-value=4.1 Score=40.68 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=16.1
Q ss_pred CCceeeeeccCCCCcceee
Q 003413 296 RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 296 yN~tIfAYGQTGSGKTyTM 314 (822)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456899999999999876
No 83
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=63.33 E-value=2.8 Score=41.35 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=18.0
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..+++|.|+ +..++||||||.+.
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 3455678764 77789999999864
No 84
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=63.23 E-value=2.8 Score=42.03 Aligned_cols=24 Identities=33% Similarity=0.650 Sum_probs=18.0
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..+++|.| ++..++||||||.+.
T Consensus 54 i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 54 IPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445667876 567789999999764
No 85
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=63.18 E-value=2.8 Score=44.34 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=24.5
Q ss_pred hhHHhhhhHHHHHHHHHcCC-CceeeeeccCCCCcceee
Q 003413 277 QHEVYSRTTADLVEAVLQGR-NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 277 QeeVF~~~v~pLV~svL~Gy-N~tIfAYGQTGSGKTyTM 314 (822)
+++..+. +...+..++.|. ..+|+-||++|+|||+++
T Consensus 25 r~~~~~~-l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 25 REDILRD-AAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CHHHHHH-HHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred hHHHHHH-HHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3444443 333455555543 458999999999999876
No 86
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=62.54 E-value=2 Score=40.64 Aligned_cols=17 Identities=29% Similarity=0.679 Sum_probs=14.8
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..++-||++|+|||+.+
T Consensus 37 ~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp SEEEEESSSTTTTCHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45777999999999987
No 87
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.44 E-value=5.5 Score=45.36 Aligned_cols=25 Identities=0% Similarity=-0.084 Sum_probs=12.7
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHhh
Q 003413 516 IANISPCNLSFGETQNTLHWADRAK 540 (822)
Q Consensus 516 Ia~ISPs~~~~eETLsTLrFA~Rak 540 (822)
+||-.+........+..|.....+.
T Consensus 391 ~cc~~~~~~~~~~~~~~l~~~~~~~ 415 (597)
T 3oja_B 391 LCCKESDKPYLDRLLQYIALTSVVE 415 (597)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCccchhHHHHHhhHHHHhh
Confidence 4555555555555555555444443
No 88
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=62.28 E-value=1.9 Score=46.80 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=30.0
Q ss_pred CeeeEeccccCCCCchhHHhhhhHHHHHH-HH---HcCCCceeeeeccCCCCcceee
Q 003413 262 GRHFTFDASFPDSTSQHEVYSRTTADLVE-AV---LQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 262 ~k~F~FD~VF~~~asQeeVF~~~v~pLV~-sv---L~GyN~tIfAYGQTGSGKTyTM 314 (822)
...+.||.+.+.+.--+.+...+..++.. .+ +..-...|+-||++|+|||+..
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 34577888887533323333322222221 00 1122457999999999999865
No 89
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=61.29 E-value=2.9 Score=43.82 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=19.7
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..++.|....++++++||||||.+.
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 123 LPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCCccHHH
Confidence 45567774455789999999999863
No 90
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=61.18 E-value=3.1 Score=41.64 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=17.2
Q ss_pred HHHHcCCCceeeeeccCCCCcceee
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..+++|.| ++..++||||||.+.
T Consensus 61 ~~~~~g~~--~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 61 PVALSGLD--MVGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHTCC--EEEEECTTSCHHHHH
T ss_pred HHHhCCCC--EEEECCCcCHHHHHH
Confidence 44567876 566779999999874
No 91
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=60.99 E-value=3.4 Score=43.90 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=19.4
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.+..++.|.+ ++..++||||||.+.
T Consensus 70 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 70 AILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HhHHHhCCCC--EEEECCCCCcccHHH
Confidence 3455667877 678899999999873
No 92
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=60.50 E-value=3.4 Score=40.96 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=17.0
Q ss_pred HHHHcCCCceeeeeccCCCCccee
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyT 313 (822)
..+++|.| ++..++||||||.+
T Consensus 56 ~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 56 PLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHhCCCC--EEEECCCCCcHHHH
Confidence 44567876 56778999999987
No 93
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=60.46 E-value=2.9 Score=41.91 Aligned_cols=26 Identities=42% Similarity=0.620 Sum_probs=18.7
Q ss_pred HHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 287 DLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 287 pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.++..+..|. .++..|+||||||..+
T Consensus 68 ~~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 3445556664 4678899999999755
No 94
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=60.46 E-value=2.2 Score=46.01 Aligned_cols=51 Identities=14% Similarity=0.314 Sum_probs=28.9
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHH-HHHcC---CCceeeeeccCCCCcceee
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVE-AVLQG---RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~-svL~G---yN~tIfAYGQTGSGKTyTM 314 (822)
..+|+.|.+.+.--+.+.+.+..|+-. .++.+ ....|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 456787776543333344333333211 12222 1235889999999999875
No 95
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=60.40 E-value=1.9 Score=45.55 Aligned_cols=51 Identities=14% Similarity=0.322 Sum_probs=28.8
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHH-HHHcCC---CceeeeeccCCCCcceee
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVE-AVLQGR---NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~-svL~Gy---N~tIfAYGQTGSGKTyTM 314 (822)
..+||.|.+.+.--+.+.+.+..|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 356787776533333333333333221 112222 346999999999999875
No 96
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=60.25 E-value=3.7 Score=39.29 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=15.0
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..++-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47899999999999876
No 97
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=59.81 E-value=4.1 Score=37.68 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=18.3
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.+..+. ..+..|+-||.+|+|||+..
T Consensus 19 ~~~~~~-~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 19 EVEAAA-KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HHHHHH-TCSSCEEEEEETTCCHHHHH
T ss_pred HHHHHh-CCCCcEEEECCCCccHHHHH
Confidence 334433 34456888999999999875
No 98
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=59.64 E-value=3.6 Score=41.65 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=17.7
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..+++|.+ ++..++||||||.+.
T Consensus 74 i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 74 IPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEcCCCCCchhHh
Confidence 345567766 566789999999864
No 99
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=59.16 E-value=17 Score=39.39 Aligned_cols=247 Identities=13% Similarity=0.127 Sum_probs=124.2
Q ss_pred CCCCCCCeEEEEEcCCCCchhhhcCCceEEEEecCceeEEeeccCcchhhhhcccCCeeeEeccccCCCC-chhHHhhhh
Q 003413 206 HVPSGSRILVFVRLRPMSKKEKESGSRCCVRIVNKRDVYLTEFANEHDYLRLKRLRGRHFTFDASFPDST-SQHEVYSRT 284 (822)
Q Consensus 206 ~~~~~~~IrV~VRVRPl~~~E~~~g~~~~V~v~~~~~v~l~~~~~~~~~~~~~~~~~k~F~FD~VF~~~a-sQeeVF~~~ 284 (822)
+.+.+|.||+|+=+-.-. .+....|...+ ..|. . .+..+.|.|++|++... +-.+++...
T Consensus 54 IdElKG~IRcFAYi~~~~-----~p~~~~idY~~-~~It--~-----------~~~~~~y~FnRiIp~~~~~e~~~l~qE 114 (333)
T 4etp_B 54 IIEQKGTMRVYAYVMEQN-----LPENLLFDYEN-GVIT--Q-----------GLSEHVYKFNRVIPHLKVSEDCFFTQE 114 (333)
T ss_dssp HHHHHTCCEEEEEECCSS-----CCSSCEEETTT-TEEE--C-------------CCCEEECSEEEETTTCCHHHHHHHT
T ss_pred HHHhcCcEEEEEEECccc-----CCccEEEeccc-ceEe--e-----------cCCcceEEEeeeechhhcchHHHHHHH
Confidence 556789999999886621 22222222211 1221 0 12467999999997655 234444456
Q ss_pred HHHHHHHHH-cCCCceeeeeccCCCCcceeecccCCCCchHHHHHHHHHHhhhhcC--CCCcEEEEEEEEEEecce-eee
Q 003413 285 TADLVEAVL-QGRNGSVFCYGATGAGKTYTMLGTIENPGVMVLAIKDLFTKIRQRS--CDGNHVVHLSYLEVYNET-VRD 360 (822)
Q Consensus 285 v~pLV~svL-~GyN~tIfAYGQTGSGKTyTM~G~~e~~GIIpRal~~LF~~i~~~~--~~~~~~V~vS~lEIYNE~-V~D 360 (822)
++..++-++ .+.|+.||..|+.-- .- ....|+..+.... ....|.+.+-|+.+.++. ..|
T Consensus 115 ~q~y~DmcL~~~~NfslIsis~~~w------------~~----Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~D 178 (333)
T 4etp_B 115 YSVYHDMALNQKKNFNLISLSTTPH------------GS----LRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQD 178 (333)
T ss_dssp THHHHHHHHHTTCCEEEEEEESSCC------------CH----HHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEE
T ss_pred HHHHHHHHHccCCCeeEEEecCCCc------------HH----HHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhh
Confidence 889999999 899999999986521 12 2333444343220 024678999998887776 799
Q ss_pred cCCCCC-----CceEeeCCCCeEecCcEEEEcCCHHHHHHHHHhhhccCcccccCCCCCCCCceeEEEEEEEEEeecCCC
Q 003413 361 LLSPGR-----PLVLREDKQGILAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRANETSSRSHAILQVIIEYRVKDASM 435 (822)
Q Consensus 361 LL~p~~-----~L~ired~~Gv~V~gLtev~V~S~eE~~~lL~~G~~nR~v~sT~~N~~SSRSH~IftI~V~~~~~~~~~ 435 (822)
||.+.. .+.+.-+...+.+ +-..+.+.+..+.+.++.. ..+. ...-...-.|+.+.+.....+..+
T Consensus 179 lL~~~~~~~~~~I~lkiee~sI~l-dS~~i~i~~~~~~l~~~~k-------l~~~-~~~~~~GI~IlKfqf~~~~~~~~~ 249 (333)
T 4etp_B 179 MLLDYSHNDKDSIKLKFEKHSISL-DSKLVIIENGLEDLPLNFS-------ADEH-PNLPHSGMGIIKVQFFPRDSKSDG 249 (333)
T ss_dssp SSCC----------CEEETTEEEC-CSCCEEESSGGGGSCTTSS-------CCC---------CEEEEEEEEECC-----
T ss_pred hhccccccCCCCceEEeecceEee-cceEEEeccccccchhhhc-------cccC-CCCCCCCceEEEEEEEecCccccc
Confidence 998742 2222222222222 2233344443322211110 0000 000111335666666554433222
Q ss_pred ceeeEEeeEEEeecCCCcccccccchhhhhHHHHhhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhccCCCceeeE
Q 003413 436 NIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVM 515 (822)
Q Consensus 436 ~~~~~~SkL~LVDLAGSER~~kt~~~g~rlkE~~~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDSLGGnskT~m 515 (822)
+.....-..+||.+-+.. .+..|.++|+-= -.-.|+++-+|+--|. ..+.++
T Consensus 250 n~~~~~~~fYFiEi~~~~--------------------ti~~l~~~i~~~-------~~~~spi~~ilkkLl~-~TKS~f 301 (333)
T 4etp_B 250 NNDPVPVDFYFIELNNLK--------------------SIEQFDKSIFKK-------ESAETPIALVLKKLIS-DTKSFF 301 (333)
T ss_dssp ---CCCEEEEEEEECSHH--------------------HHHHHHSCC-----------CCCCHHHHHHHHHHH-HSBCEE
T ss_pred ccCCcceeEEEEEecChh--------------------HHHHHHhhcCcc-------cccCCCHHHHHHHHHh-hCcceE
Confidence 211122367888877443 223333333211 1335677777776554 468899
Q ss_pred EEeeCCCCC
Q 003413 516 IANISPCNL 524 (822)
Q Consensus 516 Ia~ISPs~~ 524 (822)
|.++.-...
T Consensus 302 lfnl~~~~~ 310 (333)
T 4etp_B 302 LLNLNDSKN 310 (333)
T ss_dssp EEEECCSTT
T ss_pred EEEcCCcch
Confidence 999976553
No 100
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=59.14 E-value=4.6 Score=42.57 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCC---CceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQGR---NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~Gy---N~tIfAYGQTGSGKTyTM 314 (822)
+...+..++.|. --||+-||+.|+|||+..
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 344577888887 348999999999998865
No 101
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=58.80 E-value=2 Score=45.10 Aligned_cols=20 Identities=40% Similarity=0.765 Sum_probs=16.7
Q ss_pred CCCceeeeeccCCCCcceee
Q 003413 295 GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 295 GyN~tIfAYGQTGSGKTyTM 314 (822)
+....|+-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34558999999999999876
No 102
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.80 E-value=5.4 Score=45.29 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=48.9
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHH-HHHc--C--CCceeeeeccCCCCcceeec--------------cc---CCCC
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVE-AVLQ--G--RNGSVFCYGATGAGKTYTML--------------GT---IENP 321 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~-svL~--G--yN~tIfAYGQTGSGKTyTM~--------------G~---~e~~ 321 (822)
..+||.|-+-+.--+++.+.+.-|+.. ..+. | .--.|+-||+.|+|||++.- |+ ....
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYV 284 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSS
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccC
Confidence 456788877654445555555555543 3333 3 23469999999999997541 21 1235
Q ss_pred chHHHHHHHHHHhhhhcC
Q 003413 322 GVMVLAIKDLFTKIRQRS 339 (822)
Q Consensus 322 GIIpRal~~LF~~i~~~~ 339 (822)
|--.+.++.+|.......
T Consensus 285 Gesek~ir~lF~~Ar~~a 302 (467)
T 4b4t_H 285 GEGARMVRELFEMARTKK 302 (467)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHhcC
Confidence 778889999998876543
No 103
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=58.56 E-value=4.5 Score=37.44 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=17.1
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
...+..|+-||.+|+|||+..
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 345667899999999998764
No 104
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=58.27 E-value=2.9 Score=43.63 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=19.1
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+...+..|....++-||++|+|||+++
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 333444553344899999999999876
No 105
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=57.86 E-value=4 Score=41.66 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.6
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
...|+-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457889999999999876
No 106
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=57.27 E-value=2.6 Score=41.38 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=17.5
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..+++|.| ++..++||||||.+.
T Consensus 35 i~~~~~~~~--~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 35 IPGALRGES--MVGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHTCC--EEEECCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 344557766 467789999999863
No 107
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=56.91 E-value=4.2 Score=43.07 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=20.5
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
++..++.|.+..++..++||||||.+.
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 345666775566788899999999873
No 108
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=56.74 E-value=3.7 Score=42.98 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=19.4
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..++.|....++..++||||||.+.
T Consensus 36 i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 36 LPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 45556774456788899999999864
No 109
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=56.02 E-value=3.8 Score=43.67 Aligned_cols=24 Identities=33% Similarity=0.713 Sum_probs=18.2
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..+++|.+ ++..++||||||.+.
T Consensus 68 i~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 68 IKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCCchHHH
Confidence 345567877 677889999999764
No 110
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=55.91 E-value=5.3 Score=41.78 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=28.0
Q ss_pred EeccccCCCCchhHHhhhhHHHHHHHHH--cCCCceeeeeccCCCCcceee
Q 003413 266 TFDASFPDSTSQHEVYSRTTADLVEAVL--QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 266 ~FD~VF~~~asQeeVF~~~v~pLV~svL--~GyN~tIfAYGQTGSGKTyTM 314 (822)
+|+.+.+ ++.+... +..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKN-LNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHH-HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHH-HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4666654 3445543 334455443 244567999999999999865
No 111
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=55.47 E-value=3.9 Score=46.42 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=30.5
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHH-HHH----cCCCceeeeeccCCCCcceee
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVE-AVL----QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~-svL----~GyN~tIfAYGQTGSGKTyTM 314 (822)
...|+.+.+.+..-+.+++.+..++-. .++ ......|+-||++|+|||+..
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 456777776544444455444333211 111 234567999999999999865
No 112
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=55.15 E-value=4.8 Score=41.31 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=16.9
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
.|....++-||++|+|||++.
T Consensus 43 ~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 43 TGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp HTCCCEEEEESCTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 454445899999999999876
No 113
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=54.11 E-value=2.4 Score=47.25 Aligned_cols=17 Identities=29% Similarity=0.772 Sum_probs=15.0
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|+-||++|+|||+..
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56899999999999876
No 114
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=53.49 E-value=4.6 Score=41.40 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=17.2
Q ss_pred HHHHcCCCceeeeeccCCCCcceee
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..+++|.+ ++..++||||||.+.
T Consensus 26 ~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 26 PLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCcHHHHH
Confidence 44557765 567789999999765
No 115
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=53.47 E-value=8.6 Score=40.19 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHcCC-----CceeeeeccCCCCcceee
Q 003413 283 RTTADLVEAVLQGR-----NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 283 ~~v~pLV~svL~Gy-----N~tIfAYGQTGSGKTyTM 314 (822)
.++..++..++.|+ ...|+..|++|||||+..
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 35666777777664 246889999999998764
No 116
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=53.46 E-value=3.6 Score=42.65 Aligned_cols=19 Identities=37% Similarity=0.697 Sum_probs=16.2
Q ss_pred CCceeeeeccCCCCcceee
Q 003413 296 RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 296 yN~tIfAYGQTGSGKTyTM 314 (822)
-...+...|+||||||.+|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SSEEEEEECSTTCSHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 4457888999999999988
No 117
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=53.20 E-value=7.9 Score=39.96 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=27.3
Q ss_pred eEeccccCCCCchhHHhhhhHHHHHHHHH--cCCCceeeeeccCCCCcceee
Q 003413 265 FTFDASFPDSTSQHEVYSRTTADLVEAVL--QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 265 F~FD~VF~~~asQeeVF~~~v~pLV~svL--~GyN~tIfAYGQTGSGKTyTM 314 (822)
.+|+.+.+. ..+... +..++..+. .+....|+-||++|+|||+..
T Consensus 9 ~~~~~~ig~----~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 9 KTLDEYIGQ----ERLKQK-LRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CSTTTCCSC----HHHHHH-HHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred ccHHHhhCH----HHHHHH-HHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 356666654 333332 333444333 235567899999999999775
No 118
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=53.08 E-value=3.6 Score=42.07 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=19.6
Q ss_pred HHHHHcCC--CceeeeeccCCCCcceee
Q 003413 289 VEAVLQGR--NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~Gy--N~tIfAYGQTGSGKTyTM 314 (822)
+..++.|. .-+++-||+.|+|||+..
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 34555663 247999999999999875
No 119
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=52.73 E-value=5.2 Score=45.57 Aligned_cols=27 Identities=44% Similarity=0.587 Sum_probs=19.2
Q ss_pred HHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 287 DLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 287 pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.+++.+..|.+.++++ ++||||||.++
T Consensus 189 ~~~~~~~~~~~~~ll~-~~TGsGKT~~~ 215 (590)
T 3h1t_A 189 RAVQSVLQGKKRSLIT-MATGTGKTVVA 215 (590)
T ss_dssp HHHHHHHTTCSEEEEE-ECTTSCHHHHH
T ss_pred HHHHHHhcCCCceEEE-ecCCCChHHHH
Confidence 3445555676655544 99999999987
No 120
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=52.65 E-value=3.7 Score=43.02 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=21.6
Q ss_pred chhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 276 SQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 276 sQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.|+++... +...+..| ..|+-||++|+|||+.+
T Consensus 31 g~~~~~~~----l~~~l~~~--~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 31 GQKYMINR----LLIGICTG--GHILLEGVPGLAKTLSV 63 (331)
T ss_dssp SCHHHHHH----HHHHHHHT--CCEEEESCCCHHHHHHH
T ss_pred CcHHHHHH----HHHHHHcC--CeEEEECCCCCcHHHHH
Confidence 35555443 33334444 36788999999999876
No 121
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=52.32 E-value=5.5 Score=45.50 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=16.4
Q ss_pred HcCCCceeeeeccCCCCcceee
Q 003413 293 LQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 293 L~GyN~tIfAYGQTGSGKTyTM 314 (822)
-.|.+ |...|+||||||.||
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHH
Confidence 35665 677899999999987
No 122
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=52.25 E-value=5.9 Score=44.35 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=25.8
Q ss_pred chhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 276 SQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 276 sQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.|+.+... ...+...+-.|.-.+|+-||++|+|||+..
T Consensus 30 Gq~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 30 GQQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp SCHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CcHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 45666631 234444444566678999999999999875
No 123
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=52.15 E-value=5.2 Score=42.39 Aligned_cols=24 Identities=25% Similarity=0.598 Sum_probs=17.9
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..++.|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 52 IPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhcCCC--EEEECCCCcHHHHHH
Confidence 345567766 677889999999754
No 124
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=52.14 E-value=5.8 Score=43.71 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=20.0
Q ss_pred HHHHHcCCCceeeeeccCCCCccee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyT 313 (822)
+..++.|.+..++..|+||||||..
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 123 LPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHcCCCCcEEEEcCCCCchhHH
Confidence 4555677667789999999999976
No 125
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=51.91 E-value=3.8 Score=42.13 Aligned_cols=17 Identities=47% Similarity=0.663 Sum_probs=15.2
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|+-||++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57899999999999875
No 126
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=51.10 E-value=5 Score=40.57 Aligned_cols=23 Identities=30% Similarity=0.222 Sum_probs=17.3
Q ss_pred HHHHcCCCceeeeeccCCCCcceee
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..++++.+ ++.+|+||+|||++.
T Consensus 103 ~~~~~~~~--~ll~~~tG~GKT~~a 125 (237)
T 2fz4_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (237)
T ss_dssp HHHTTTSE--EEEEESSSTTHHHHH
T ss_pred HHHHhCCC--EEEEeCCCCCHHHHH
Confidence 34556655 677889999999876
No 127
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=51.08 E-value=5.2 Score=42.55 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=17.4
Q ss_pred HHHHcCCCceeeeeccCCCCcceee
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..++.|.| ++..++||||||.+.
T Consensus 47 ~~i~~~~~--~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 47 PIIKEKRD--LMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHccCCC--EEEEcCCCCHHHHHH
Confidence 44567876 467889999999754
No 128
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=50.32 E-value=6.6 Score=41.76 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=19.7
Q ss_pred HHHHcC---CCceeee--eccCCCCcceee
Q 003413 290 EAVLQG---RNGSVFC--YGATGAGKTYTM 314 (822)
Q Consensus 290 ~svL~G---yN~tIfA--YGQTGSGKTyTM 314 (822)
..+..| -...++. ||+.|+|||+.+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 555566 4567888 999999999876
No 129
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=49.59 E-value=1.6e+02 Score=28.96 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=20.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 643 APEGFRELQQTVKTLEAEIEKMKKDHA 669 (822)
Q Consensus 643 ~ee~~~el~~~~k~le~ele~~~~~~~ 669 (822)
..+.+.+++.++..|..+++.++....
T Consensus 88 ~se~~~elq~ri~~L~~El~~~k~~~~ 114 (168)
T 3o0z_A 88 DSEMIGDLQARITSLQEEVKHLKHNLE 114 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888888888888776554
No 130
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=48.45 E-value=6.4 Score=40.97 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=15.0
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
...++-||++|+|||+++
T Consensus 48 ~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CSEEEECSSTTSSHHHHH
T ss_pred CeEEEeeCcCCCCHHHHH
Confidence 356788899999999886
No 131
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=47.33 E-value=4.6 Score=41.28 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=16.6
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
.|....++-||+.|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 354445899999999999876
No 132
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=46.96 E-value=5.7 Score=47.85 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=27.9
Q ss_pred EeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 266 TFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 266 ~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.||.|++. ++ .+..+++.+..+....++-||++|+|||+.+
T Consensus 168 ~ld~viGr----~~----~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 168 KLDPVIGR----DE----EIRRVIQILLRRTKNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CSCCCCSC----HH----HHHHHHHHHHCSSCCCCEEEECTTSCHHHHH
T ss_pred CCcccCCc----HH----HHHHHHHHHhcCCCCceEEEcCCCCCHHHHH
Confidence 56666654 32 3344555555666667888999999999987
No 133
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=46.74 E-value=8 Score=39.55 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=16.8
Q ss_pred HcCCCceeeeeccCCCCcceee
Q 003413 293 LQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 293 L~GyN~tIfAYGQTGSGKTyTM 314 (822)
-.|.-..++-||+.|+|||++.
T Consensus 38 ~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 38 KDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp HSCCCCCEEEECSTTSSHHHHH
T ss_pred HcCCCCeEEEECcCCCCHHHHH
Confidence 3454334899999999999876
No 134
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=45.98 E-value=6.6 Score=41.26 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=18.4
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.+..++.|.+ ++..++||||||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3455667766 567789999999764
No 135
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=45.97 E-value=7.9 Score=41.59 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=17.6
Q ss_pred HHHHHcCCCceeeeeccCCCCccee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyT 313 (822)
+..+++|.| ++..++||||||..
T Consensus 30 i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 30 AKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHhcCCC--EEEEeCCCCCHHHH
Confidence 345567765 57889999999984
No 136
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=45.53 E-value=4.5 Score=44.07 Aligned_cols=20 Identities=35% Similarity=0.645 Sum_probs=16.8
Q ss_pred CCCceeeeeccCCCCcceee
Q 003413 295 GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 295 GyN~tIfAYGQTGSGKTyTM 314 (822)
.....|...|+||||||.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34557888999999999998
No 137
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=45.21 E-value=9.4 Score=40.46 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=14.4
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..++-||++|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34777999999999876
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.83 E-value=6.1 Score=41.42 Aligned_cols=15 Identities=33% Similarity=0.702 Sum_probs=13.9
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
++-||++|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 888999999999986
No 139
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=44.48 E-value=7.6 Score=38.12 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=21.9
Q ss_pred HHHHHHHHcC-C--CceeeeeccCCCCcceee
Q 003413 286 ADLVEAVLQG-R--NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 286 ~pLV~svL~G-y--N~tIfAYGQTGSGKTyTM 314 (822)
-+-++.++.| + ...+.-+|++|+|||..+
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 3556778854 2 446788999999999876
No 140
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=44.46 E-value=7.9 Score=43.47 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=18.6
Q ss_pred HHHHcCCCceeeeeccCCCCcceee
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..++.|.+..++..++||||||.+.
T Consensus 151 ~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 151 PLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHcCCCCCEEEECCCCccHHHHH
Confidence 3455664456788899999999873
No 141
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=44.19 E-value=8.8 Score=42.92 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=27.3
Q ss_pred EeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 266 TFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 266 ~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.||.|.+. ++. +..++..+..+....++-||++|+|||+..
T Consensus 178 ~ld~iiGr----~~~----i~~l~~~l~r~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 178 SLDPVIGR----SKE----IQRVIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp CSCCCCCC----HHH----HHHHHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred CCCCccCc----HHH----HHHHHHHHhccCCCCeEEECCCCCCHHHHH
Confidence 46666654 333 333444444556667889999999999886
No 142
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=43.95 E-value=12 Score=39.27 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=15.9
Q ss_pred CCceeeeeccCCCCcceee
Q 003413 296 RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 296 yN~tIfAYGQTGSGKTyTM 314 (822)
....++-||+.|+|||+++
T Consensus 37 ~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 37 IHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CCSEEEEESCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456899999999999876
No 143
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=43.94 E-value=57 Score=40.72 Aligned_cols=39 Identities=5% Similarity=0.096 Sum_probs=23.6
Q ss_pred chHHHHHHHHHHhhhhcC-CCCcEEEEEEEEEEecceeee
Q 003413 322 GVMVLAIKDLFTKIRQRS-CDGNHVVHLSYLEVYNETVRD 360 (822)
Q Consensus 322 GIIpRal~~LF~~i~~~~-~~~~~~V~vS~lEIYNE~V~D 360 (822)
+|..+.+.+|...|...- ........|..+.||.=.+++
T Consensus 406 ~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDI~GFE~f~ 445 (1080)
T 2dfs_A 406 HIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFE 445 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSCCCEEEEEEEECCCCCCS
T ss_pred HHHHHHHHHHHHHHHHhhccccccCceEEeeccCCccccC
Confidence 667777777777776521 112234667778888655544
No 144
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=43.86 E-value=8.9 Score=43.07 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=19.8
Q ss_pred HHHHHHcCCCceeeeeccCCCCccee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyT 313 (822)
++..++.|.+-.+++.++||||||.+
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 34555656556788999999999986
No 145
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=42.86 E-value=6 Score=44.83 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=28.1
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHHHH-----HcC----CCceeeeeccCCCCcceee
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVEAV-----LQG----RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~sv-----L~G----yN~tIfAYGQTGSGKTyTM 314 (822)
..++|+.|.+.+..-+++ ..++..+ +.+ ....|+-||++|+|||+.+
T Consensus 11 ~~~~f~di~G~~~~~~~l-----~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEEL-----KEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHH-----HHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHH-----HHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 356788887653322222 3333332 222 2345899999999999865
No 146
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=42.80 E-value=9.4 Score=42.23 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=18.2
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..++.|.| ++..++||||||.+.
T Consensus 16 i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 16 AQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCChHHHHH
Confidence 445567876 567789999999774
No 147
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=42.75 E-value=13 Score=37.77 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=22.6
Q ss_pred hhhhHHHHHHHHHcCCC-----ceeeeeccCCCCcceee
Q 003413 281 YSRTTADLVEAVLQGRN-----GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 281 F~~~v~pLV~svL~GyN-----~tIfAYGQTGSGKTyTM 314 (822)
|+.+...++..++.|+. ..|+..|+.|||||+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 11 FKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 33444445556665544 35889999999998753
No 148
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=42.48 E-value=5.5 Score=40.84 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=15.3
Q ss_pred HHHcCCCceeeeeccCCCCcceee
Q 003413 291 AVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 291 svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.++.|.++ +..++||||||.+.
T Consensus 124 ~~l~~~~~--ll~~~tGsGKT~~~ 145 (282)
T 1rif_A 124 EGLVNRRR--ILNLPTSAGRSLIQ 145 (282)
T ss_dssp HHHHHSEE--EECCCTTSCHHHHH
T ss_pred HHHhcCCe--EEEcCCCCCcHHHH
Confidence 34445443 34899999999876
No 149
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=42.07 E-value=97 Score=28.12 Aligned_cols=30 Identities=27% Similarity=0.157 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 566 LLLELQKENRELRVQMARQQQRLLALEAQA 595 (822)
Q Consensus 566 li~eLq~Ei~~Lr~eL~~~q~~i~~le~q~ 595 (822)
.+..|.++|+.|+.+...+.+++..++.+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666655555555555554
No 150
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=41.97 E-value=8.4 Score=44.81 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=18.3
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.|..++.... ..+-.|+.|||||+|+
T Consensus 197 AV~~al~~~~-~~lI~GPPGTGKT~ti 222 (646)
T 4b3f_X 197 AVLFALSQKE-LAIIHGPPGTGKTTTV 222 (646)
T ss_dssp HHHHHHHCSS-EEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC-ceEEECCCCCCHHHHH
Confidence 3555554333 3467799999999997
No 151
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=41.72 E-value=8.8 Score=39.68 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=16.9
Q ss_pred HHHHcCCCceeeeeccCCCCcceee
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..+++|. ..++..++||||||.+.
T Consensus 38 ~~~~~~~-~~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 38 PLFLNDE-YNIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHTC-SEEEEECCSSSSHHHHH
T ss_pred HHHhCCC-CCEEEECCCCChHHHHH
Confidence 4445563 24567899999999874
No 152
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=41.46 E-value=1.3e+02 Score=37.47 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 003413 569 ELQKENRELRVQMARQ 584 (822)
Q Consensus 569 eLq~Ei~~Lr~eL~~~ 584 (822)
.+++|+.+|+++++.+
T Consensus 957 ~~~~e~~~L~~~l~~l 972 (1080)
T 2dfs_A 957 TYSTETEKLRSDVERL 972 (1080)
T ss_dssp HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555544443
No 153
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=41.17 E-value=11 Score=39.46 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=16.9
Q ss_pred CCCceeeeeccCCCCcceee
Q 003413 295 GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 295 GyN~tIfAYGQTGSGKTyTM 314 (822)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45678999999999999764
No 154
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=40.72 E-value=28 Score=40.73 Aligned_cols=86 Identities=22% Similarity=0.414 Sum_probs=51.2
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeecccC---CCCchH----HHHHHHHHHhhh
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLGTI---ENPGVM----VLAIKDLFTKIR 336 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G~~---e~~GII----pRal~~LF~~i~ 336 (822)
.|..-.-|.|...|..-+.. +++.+-.|... ....|.|||||||+|..-. ..+-|| ...+.+|+..+.
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~~-~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~el~ 78 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEK----LVKGIQEGKKH-QTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFK 78 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHH----HHHHHhcCCCc-EEEECcCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHH
Confidence 36666678999999887764 45666666532 4567999999999996421 112111 123445555554
Q ss_pred hcCCCCcEEEEEEEEEEe
Q 003413 337 QRSCDGNHVVHLSYLEVY 354 (822)
Q Consensus 337 ~~~~~~~~~V~vS~lEIY 354 (822)
.--.+.......||+.-|
T Consensus 79 ~~~~~~~v~~fps~yd~~ 96 (661)
T 2d7d_A 79 EFFPNNAVEYFVSYYDYY 96 (661)
T ss_dssp HHCTTSEEEEECCCEEEE
T ss_pred HHcCCCcEEEcccccccc
Confidence 433333455666765555
No 155
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=40.71 E-value=6.4 Score=41.34 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=17.8
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..++.|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 52 IMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445566766 567789999999873
No 156
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=40.50 E-value=11 Score=41.58 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=17.9
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..++.|.| ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 345567876 567789999999764
No 157
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=39.60 E-value=13 Score=40.65 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=17.7
Q ss_pred HHHHcCCCceeeeeccCCCCcceee
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..++.|.+ +++.++||||||.+.
T Consensus 88 ~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 88 PVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhcCCC--EEEECCCCCCchHHH
Confidence 44567876 577889999999864
No 158
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=38.88 E-value=12 Score=41.38 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=24.8
Q ss_pred CCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 274 STSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 274 ~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..|.+++..+. ..+..| ...++..|..|||||+++
T Consensus 27 n~~Q~~av~~~~----~~i~~~-~~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVM----KAIKEK-KHHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHH----HHHHSS-SCEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHH----HHHhcC-CCEEEEEeCCCCCHHHHH
Confidence 456877776432 333333 348899999999999876
No 159
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=38.78 E-value=11 Score=36.47 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=21.6
Q ss_pred HHHHHHHc-CCC--ceeeeeccCCCCcceee
Q 003413 287 DLVEAVLQ-GRN--GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 287 pLV~svL~-GyN--~tIfAYGQTGSGKTyTM 314 (822)
+-++.++. |+. ..+..+|.+|+|||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 45677776 553 46889999999999876
No 160
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=38.77 E-value=7.6 Score=42.47 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=15.7
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
+.-++.+|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 566889999999999986
No 161
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=38.62 E-value=5.3 Score=45.60 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=27.7
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHHHH-----HcCC----CceeeeeccCCCCcceee
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVEAV-----LQGR----NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~sv-----L~Gy----N~tIfAYGQTGSGKTyTM 314 (822)
..++||.|.+.+ ++-. .+..++..+ +..+ ...|+-||++|+|||+.+
T Consensus 26 ~~~~f~dv~G~~----~~k~-~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAE----EAKE-ELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCH----HHHH-HHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcH----HHHH-HHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 356788777653 2322 233344332 2222 224899999999999876
No 162
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=38.54 E-value=9.8 Score=44.14 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=15.7
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
+..++..|++|||||+|+
T Consensus 164 ~~~~vi~G~pGTGKTt~l 181 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTV 181 (608)
T ss_dssp BSEEEEECCTTSTHHHHH
T ss_pred CCCEEEEeCCCCCHHHHH
Confidence 456889999999999987
No 163
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=37.96 E-value=15 Score=43.08 Aligned_cols=46 Identities=37% Similarity=0.435 Sum_probs=32.2
Q ss_pred eEeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeecc
Q 003413 265 FTFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTMLG 316 (822)
Q Consensus 265 F~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~G 316 (822)
|.|.. |.|...|..-+.. +++.+-.|... ....|.|||||||||..
T Consensus 2 ~~~~~-~~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 2 FRYRG-PSPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCS-CCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCC-CCCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 44444 4788889877654 55666667533 45679999999999964
No 164
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=37.40 E-value=2e+02 Score=24.77 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003413 646 GFRELQQTVKTLEAEIEKMKKDHALQLKQKDDVI 679 (822)
Q Consensus 646 ~~~el~~~~k~le~ele~~~~~~~~ql~~k~~li 679 (822)
.+...+..+..++.++..++.++..++.+...++
T Consensus 27 ~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Ll 60 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLL 60 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888888888888877766665553
No 165
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=37.05 E-value=9.5 Score=36.86 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=19.4
Q ss_pred HHHHHHHc-CC--CceeeeeccCCCCcceee
Q 003413 287 DLVEAVLQ-GR--NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 287 pLV~svL~-Gy--N~tIfAYGQTGSGKTyTM 314 (822)
+-++.++. |+ ...+.-+|++|||||+.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 34556664 33 235677999999999876
No 166
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=36.74 E-value=15 Score=35.72 Aligned_cols=30 Identities=20% Similarity=0.111 Sum_probs=20.3
Q ss_pred HHHHHHHHHc---CCCceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQ---GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~---GyN~tIfAYGQTGSGKTyTM 314 (822)
+..+++.++. .....|...|.+|||||+.+
T Consensus 7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 3445555553 23346788999999999875
No 167
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=36.73 E-value=12 Score=43.05 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=18.3
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
|..+++|.+ ++..++||||||.+.
T Consensus 16 i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 16 AQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 445567776 577899999999865
No 168
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=36.64 E-value=11 Score=41.23 Aligned_cols=23 Identities=30% Similarity=0.222 Sum_probs=17.1
Q ss_pred HHHHcCCCceeeeeccCCCCcceee
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..++.|.+ ++..|+||||||.+.
T Consensus 103 ~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHhcCC--EEEEeCCCCCHHHHH
Confidence 34555644 677899999999875
No 169
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=36.41 E-value=18 Score=41.87 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=18.9
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+|..++.|.+ +++.++||+|||.+.
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHHH
Confidence 3455677877 677889999999753
No 170
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=36.33 E-value=8.5 Score=41.19 Aligned_cols=18 Identities=33% Similarity=0.613 Sum_probs=15.5
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457899999999999875
No 171
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=35.81 E-value=2.2e+02 Score=26.01 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 564 AKLLLELQKENRELRVQMARQQQRLLALEAQA 595 (822)
Q Consensus 564 ~~li~eLq~Ei~~Lr~eL~~~q~~i~~le~q~ 595 (822)
...|.+|++|+.....||.-.++++...+.+-
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~ 65 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAV 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999887766653
No 172
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=35.77 E-value=16 Score=44.20 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=47.9
Q ss_pred eeEeccccCCCCchhHHhhhhHHHHHH-HHHcCCC----ceeeeeccCCCCcceeec------cc-----------CCCC
Q 003413 264 HFTFDASFPDSTSQHEVYSRTTADLVE-AVLQGRN----GSVFCYGATGAGKTYTML------GT-----------IENP 321 (822)
Q Consensus 264 ~F~FD~VF~~~asQeeVF~~~v~pLV~-svL~GyN----~tIfAYGQTGSGKTyTM~------G~-----------~e~~ 321 (822)
..+||.|-+-+.--+++.+.+.-||.. .++.++. ..|+-||+.|+|||...- |. ....
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 467888877665555565555455543 3445544 369999999999996542 11 1234
Q ss_pred chHHHHHHHHHHhhhh
Q 003413 322 GVMVLAIKDLFTKIRQ 337 (822)
Q Consensus 322 GIIpRal~~LF~~i~~ 337 (822)
|-....+..+|.....
T Consensus 280 gese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 280 GESESNLRKAFEEAEK 295 (806)
T ss_dssp THHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6677888888987654
No 173
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=35.74 E-value=8.2 Score=36.73 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=13.9
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.+...|++|||||+.+
T Consensus 11 i~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFA 26 (171)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999987
No 174
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=35.58 E-value=14 Score=41.92 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=19.2
Q ss_pred HHHHHHcCCCceeeeeccCCCCccee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyT 313 (822)
+|..++.|-+--+++.++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 34555655555678899999999986
No 175
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=35.55 E-value=10 Score=34.67 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.3
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+..|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999753
No 176
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=35.44 E-value=9 Score=40.87 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=15.2
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999864
No 177
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=35.38 E-value=13 Score=36.11 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=20.7
Q ss_pred HHHHHHHc-CC--CceeeeeccCCCCcceee
Q 003413 287 DLVEAVLQ-GR--NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 287 pLV~svL~-Gy--N~tIfAYGQTGSGKTyTM 314 (822)
+-++.++. |+ ...+.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 45677774 43 346788999999999876
No 178
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=35.05 E-value=13 Score=37.25 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=17.5
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+++++-.|-- +...|+.|||||+.|
T Consensus 15 ~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHhccCCCE--EEEECCCCCCHHHHH
Confidence 4445545544 445899999999877
No 179
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=34.86 E-value=13 Score=36.23 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=19.2
Q ss_pred HHHHHHHHHc--CCCceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQ--GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~--GyN~tIfAYGQTGSGKTyTM 314 (822)
+..+++.+.. +-.-.|.-.|++|||||+.+
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 3344444432 33345667899999999876
No 180
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=34.61 E-value=11 Score=36.85 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=18.8
Q ss_pred HHHHHcC-C--CceeeeeccCCCCcceee
Q 003413 289 VEAVLQG-R--NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~G-y--N~tIfAYGQTGSGKTyTM 314 (822)
++.++.| + ...+.-+|++|+|||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4566543 2 346788999999999875
No 181
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=34.52 E-value=11 Score=40.05 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=17.1
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..++.| .++..++||+|||.++
T Consensus 18 i~~~~~~---~~ll~~~tG~GKT~~~ 40 (494)
T 1wp9_A 18 YAKCKET---NCLIVLPTGLGKTLIA 40 (494)
T ss_dssp HHHGGGS---CEEEECCTTSCHHHHH
T ss_pred HHHHhhC---CEEEEcCCCCCHHHHH
Confidence 3455667 4566789999999876
No 182
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=34.28 E-value=11 Score=37.11 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.1
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|...|++|||||.++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35677899999999876
No 183
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=34.14 E-value=14 Score=42.97 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=15.1
Q ss_pred ceeeeeccCCCCcceeec
Q 003413 298 GSVFCYGATGAGKTYTML 315 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM~ 315 (822)
..++..|+.|||||+|+.
T Consensus 196 ~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 456789999999999974
No 184
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=33.98 E-value=9.1 Score=41.35 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=14.7
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
|..++..|+||||||++|
T Consensus 35 ~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred cCceEEEcCCCCCHHHHH
Confidence 444677899999999987
No 185
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=33.69 E-value=33 Score=23.65 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 567 LLELQKENRELRVQMARQQQRLLAL 591 (822)
Q Consensus 567 i~eLq~Ei~~Lr~eL~~~q~~i~~l 591 (822)
|++|.+.+.+|+++++.+.-+|.++
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 4567777888888877766555433
No 186
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=33.50 E-value=14 Score=43.60 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=27.3
Q ss_pred EeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 266 TFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 266 ~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.||.|++. ++. +..+++.+.......++-||++|+|||+.+
T Consensus 184 ~~d~~iGr----~~~----i~~l~~~l~~~~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 184 GIDPLIGR----EKE----LERAIQVLCRRRKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp CSCCCCSC----HHH----HHHHHHHHTSSSSCEEEEECCTTSSHHHHH
T ss_pred CCCCccCC----HHH----HHHHHHHHhccCCCCeEEEcCCCCCHHHHH
Confidence 46666653 333 333455444555667889999999999887
No 187
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=33.36 E-value=13 Score=42.65 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=17.7
Q ss_pred CCCceeeeeccCCCCcceeec
Q 003413 295 GRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 295 GyN~tIfAYGQTGSGKTyTM~ 315 (822)
-.++.++..|..|||||+|+.
T Consensus 20 ~~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 20 APRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CCSSCEEEEECTTSCHHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHH
Confidence 346678899999999999985
No 188
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=33.35 E-value=21 Score=42.15 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=27.3
Q ss_pred EeccccCCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 266 TFDASFPDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 266 ~FD~VF~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.||.|.+. ++. +..++..+..+....++-||++|+|||...
T Consensus 178 ~ld~iiG~----~~~----i~~l~~~l~~~~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 178 SLDPVIGR----SKE----IQRVIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp CSCCCCCC----HHH----HHHHHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred CCCCccCc----hHH----HHHHHHHHhCCCCCCeEEECCCCCCHHHHH
Confidence 45666654 333 334445455566667899999999999876
No 189
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=33.22 E-value=19 Score=41.58 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=17.4
Q ss_pred HHHHcCCCceeeeeccCCCCcceee
Q 003413 290 EAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 290 ~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
..++.|.| ++..++||||||...
T Consensus 23 ~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 23 LPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHcCCC--EEEEcCCCchHHHHH
Confidence 44567876 567889999999853
No 190
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=32.88 E-value=9.8 Score=36.43 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=13.2
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4566799999999876
No 191
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.84 E-value=16 Score=41.22 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=15.6
Q ss_pred CceeeeeccCCCCcceee
Q 003413 297 NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 297 N~tIfAYGQTGSGKTyTM 314 (822)
...++-||++|+|||++.
T Consensus 77 ~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357899999999999886
No 192
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.63 E-value=1.2e+02 Score=26.05 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=17.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhh
Q 003413 665 KKDHALQLKQKDDVIRELKRKSDKQ 689 (822)
Q Consensus 665 ~~~~~~ql~~k~~li~el~~~~~~~ 689 (822)
-++++.++.+++..|.+|..++.+-
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556778888888887777543
No 193
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=32.62 E-value=16 Score=39.53 Aligned_cols=20 Identities=40% Similarity=0.496 Sum_probs=14.9
Q ss_pred HcCCCceeeeeccCCCCcceee
Q 003413 293 LQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 293 L~GyN~tIfAYGQTGSGKTyTM 314 (822)
-.|.+ |.-.|+||||||+++
T Consensus 173 ~~G~~--i~ivG~sGsGKSTll 192 (361)
T 2gza_A 173 QLERV--IVVAGETGSGKTTLM 192 (361)
T ss_dssp HTTCC--EEEEESSSSCHHHHH
T ss_pred hcCCE--EEEECCCCCCHHHHH
Confidence 35554 445599999999987
No 194
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=32.44 E-value=20 Score=37.95 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=14.3
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|.-.|++|||||+++
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778899999999998
No 195
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=32.26 E-value=10 Score=39.98 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=16.7
Q ss_pred HHHcCCCceeeeeccCCCCcceee
Q 003413 291 AVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 291 svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.+++|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367899999999999999999765
No 196
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=31.88 E-value=19 Score=40.91 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCceeeeeccCCCCcceee
Q 003413 287 DLVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 287 pLV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
-++..++.|. .|+-||++|+|||+..
T Consensus 33 ~l~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 33 LCLLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHHHhcCC--eeEeecCchHHHHHHH
Confidence 3444455554 5788999999999875
No 197
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=31.49 E-value=18 Score=37.24 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=15.3
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..++.||+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 68889999999999876
No 198
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=31.45 E-value=11 Score=36.26 Aligned_cols=16 Identities=25% Similarity=0.565 Sum_probs=13.1
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|.-.|++|||||+++
T Consensus 3 ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 3 PIVISGPSGTGKSTLL 18 (186)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556899999999876
No 199
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=31.22 E-value=11 Score=36.12 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=13.4
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999866
No 200
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=30.95 E-value=22 Score=41.99 Aligned_cols=16 Identities=44% Similarity=0.547 Sum_probs=14.5
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+-||++|+|||++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6999999999999875
No 201
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=30.55 E-value=21 Score=38.27 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=14.8
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|...|++|||||.|+
T Consensus 130 ~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46778999999999987
No 202
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=30.51 E-value=1.5e+02 Score=41.46 Aligned_cols=21 Identities=10% Similarity=0.036 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003413 563 QAKLLLELQKENRELRVQMAR 583 (822)
Q Consensus 563 ~~~li~eLq~Ei~~Lr~eL~~ 583 (822)
....+.+|++|+.+++.+|++
T Consensus 1932 t~~~V~~l~~~L~~~~~~L~~ 1952 (3245)
T 3vkg_A 1932 TEAQVKDLQVSLAQKNRELDV 1952 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777666644
No 203
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=30.28 E-value=2.8e+02 Score=28.28 Aligned_cols=14 Identities=14% Similarity=-0.062 Sum_probs=7.7
Q ss_pred eeeccccccccccc
Q 003413 749 VTALSGRKTRSHVI 762 (822)
Q Consensus 749 ~~~~~~~~~~~~~~ 762 (822)
|..-+|+|.=.|+.
T Consensus 194 v~v~~~~C~GC~~~ 207 (256)
T 3na7_A 194 VTIKKQACGGCFIR 207 (256)
T ss_dssp EECBTTBCTTTCCB
T ss_pred EEeeCCccCCCCee
Confidence 44455666666643
No 204
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=30.17 E-value=10 Score=42.30 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=19.6
Q ss_pred HHcCCCceeeeeccCCCCcceee
Q 003413 292 VLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 292 vL~GyN~tIfAYGQTGSGKTyTM 314 (822)
++.|++..|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 57899999999999999999855
No 205
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=30.07 E-value=12 Score=35.56 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=14.2
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|...|..|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778999999999865
No 206
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=30.04 E-value=1.9e+02 Score=27.41 Aligned_cols=28 Identities=11% Similarity=0.249 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 566 LLLELQKENRELRVQMARQQQRLLALEA 593 (822)
Q Consensus 566 li~eLq~Ei~~Lr~eL~~~q~~i~~le~ 593 (822)
.+.++++++..|+.+++....++..+..
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~ 96 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKH 96 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666555555555444443
No 207
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=30.02 E-value=14 Score=34.32 Aligned_cols=16 Identities=25% Similarity=0.464 Sum_probs=13.5
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+..|..|||||+..
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 5788999999998743
No 208
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=29.80 E-value=25 Score=41.36 Aligned_cols=17 Identities=47% Similarity=0.647 Sum_probs=15.1
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
+.|+-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 47999999999999875
No 209
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=29.16 E-value=14 Score=40.91 Aligned_cols=34 Identities=18% Similarity=0.058 Sum_probs=21.8
Q ss_pred CCCCchhHHhhhhHHHHHHHHHcCCCceeeeeccCCCCcceeec
Q 003413 272 PDSTSQHEVYSRTTADLVEAVLQGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 272 ~~~asQeeVF~~~v~pLV~svL~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
.+..-|.+.+.. ++.|.+ ++..|+||||||.+.+
T Consensus 113 ~l~~~Q~~ai~~--------~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 113 EPHWYQKDAVFE--------GLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp CCCHHHHHHHHH--------HHHHSE--EEEECCSTTTHHHHHH
T ss_pred CCCHHHHHHHHH--------HHhcCC--cEEEeCCCCCHHHHHH
Confidence 444556555443 334433 5778999999999863
No 210
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=29.10 E-value=12 Score=36.58 Aligned_cols=16 Identities=38% Similarity=0.600 Sum_probs=13.7
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.+.-.|++|||||.+|
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999887
No 211
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=29.09 E-value=24 Score=41.98 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=19.7
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
++.|-||+.-|.+|||||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999875
No 212
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=28.80 E-value=1.1e+02 Score=26.67 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003413 646 GFRELQQTVKTLEAEIEKMKKDHALQLKQKDDVI 679 (822)
Q Consensus 646 ~~~el~~~~k~le~ele~~~~~~~~ql~~k~~li 679 (822)
.+..++..+..++.++..++.++..++.+...++
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Ll 62 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELL 62 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888777766655553
No 213
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=28.56 E-value=26 Score=42.12 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=19.6
Q ss_pred HHHHHHcCCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..+.-.|....++..|+||||||...
T Consensus 380 I~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 380 IRNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred HHhhccccCCCcEEEEcCCCCCHHHHH
Confidence 334444556567889999999999765
No 214
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=28.53 E-value=15 Score=34.26 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.3
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|+..|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999998764
No 215
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=28.17 E-value=93 Score=34.27 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 003413 575 RELRVQMARQQQRLLALEAQALA 597 (822)
Q Consensus 575 ~~Lr~eL~~~q~~i~~le~q~~a 597 (822)
..|+++|.+.|+.+..++.|+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~ 422 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQAAT 422 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhh
Confidence 34666777777777777766543
No 216
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=28.05 E-value=11 Score=36.78 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.5
Q ss_pred eeeeeccCCCCcceeec
Q 003413 299 SVFCYGATGAGKTYTML 315 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM~ 315 (822)
.++-||..|+|||+.++
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999999873
No 217
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=28.01 E-value=16 Score=34.47 Aligned_cols=15 Identities=40% Similarity=0.691 Sum_probs=13.0
Q ss_pred eeeeeccCCCCccee
Q 003413 299 SVFCYGATGAGKTYT 313 (822)
Q Consensus 299 tIfAYGQTGSGKTyT 313 (822)
.|+..|.+|||||+.
T Consensus 7 ~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 7 NIYLIGLMGAGKTSV 21 (185)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999874
No 218
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=27.62 E-value=26 Score=42.13 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=19.7
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
++.|-||+..|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 699999999999999999875
No 219
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=27.46 E-value=12 Score=38.10 Aligned_cols=19 Identities=32% Similarity=0.254 Sum_probs=15.5
Q ss_pred ceeeeeccCCCCcceeecc
Q 003413 298 GSVFCYGATGAGKTYTMLG 316 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM~G 316 (822)
..++-||..|+|||..+++
T Consensus 13 ~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4678899999999988743
No 220
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=27.37 E-value=14 Score=35.32 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=13.5
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999999765
No 221
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=27.28 E-value=19 Score=43.17 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=43.4
Q ss_pred eeeEeccccCCCCchhHHhhhhHHHHHH-HHHcC----CCceeeeeccCCCCcceeecc---c--------------CCC
Q 003413 263 RHFTFDASFPDSTSQHEVYSRTTADLVE-AVLQG----RNGSVFCYGATGAGKTYTMLG---T--------------IEN 320 (822)
Q Consensus 263 k~F~FD~VF~~~asQeeVF~~~v~pLV~-svL~G----yN~tIfAYGQTGSGKTyTM~G---~--------------~e~ 320 (822)
..+.||.|.+.+..-+.+.+.+..|+.. .++.. ....|+-||++|||||+.+-. . ...
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 4578888887655445555444333322 12221 234689999999999976521 1 112
Q ss_pred CchHHHHHHHHHHhhhh
Q 003413 321 PGVMVLAIKDLFTKIRQ 337 (822)
Q Consensus 321 ~GIIpRal~~LF~~i~~ 337 (822)
.|-....+..+|+....
T Consensus 279 ~g~~~~~l~~vf~~a~~ 295 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEK 295 (806)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 35555666777766543
No 222
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=27.19 E-value=23 Score=42.05 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=18.1
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..++.|.| ++..++||||||.+.
T Consensus 257 i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCChHHHHH
Confidence 345567876 567789999999864
No 223
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=27.13 E-value=14 Score=36.18 Aligned_cols=16 Identities=44% Similarity=0.580 Sum_probs=13.7
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.+.-+|++|||||..+
T Consensus 32 ~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFA 47 (251)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4567899999999877
No 224
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=27.09 E-value=27 Score=42.11 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.6
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
++.|-||+..|.+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 699999999999999999875
No 225
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=27.00 E-value=16 Score=34.35 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.2
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|+..|.+|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35788999999999854
No 226
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=26.95 E-value=13 Score=38.49 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=15.6
Q ss_pred CCceeeeeccCCCCcceee
Q 003413 296 RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 296 yN~tIfAYGQTGSGKTyTM 314 (822)
|+-+|...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3456788999999999876
No 227
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=26.88 E-value=21 Score=43.54 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=18.1
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+..++.|.| ++..++||||||.+.
T Consensus 257 i~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEeCCCchHHHHH
Confidence 344567876 567789999999874
No 228
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=26.88 E-value=14 Score=35.93 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=12.8
Q ss_pred eeeeccCCCCcceee
Q 003413 300 VFCYGATGAGKTYTM 314 (822)
Q Consensus 300 IfAYGQTGSGKTyTM 314 (822)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999976
No 229
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=26.88 E-value=3.3e+02 Score=25.16 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 566 LLLELQKENRELRVQMARQQQRLLALEAQ 594 (822)
Q Consensus 566 li~eLq~Ei~~Lr~eL~~~q~~i~~le~q 594 (822)
.|.+|++|+.....||.-.++++...+.+
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~ 51 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQ 51 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999888776655
No 230
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=26.79 E-value=16 Score=38.68 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=14.4
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|.-.|++|||||+++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45667799999999987
No 231
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=26.70 E-value=27 Score=42.04 Aligned_cols=17 Identities=47% Similarity=0.663 Sum_probs=15.2
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
+.|+-||++|+|||++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 58999999999999875
No 232
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=26.64 E-value=27 Score=43.25 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=24.1
Q ss_pred HhhhhHHHHHHHH-HcCCCceeeeeccCCCCcceee
Q 003413 280 VYSRTTADLVEAV-LQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 280 VF~~~v~pLV~sv-L~GyN~tIfAYGQTGSGKTyTM 314 (822)
||. ++.....++ -++.|-||+..|.+|||||.+.
T Consensus 155 ifa-iA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 155 IFA-ISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HHH-HHHHHHHHHHHHTCCEEEEEEESTTSSHHHHH
T ss_pred HHH-HHHHHHHHHHhcCCCeEEEEeCCCCCCcchHH
Confidence 564 233333333 3699999999999999999763
No 233
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=26.56 E-value=29 Score=37.76 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=14.4
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|.-.|++|||||+|+
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 5778899999999997
No 234
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=26.39 E-value=21 Score=41.18 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=17.9
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
|..++. +..++..|..|||||+++
T Consensus 198 v~~~~~--~~~~~I~G~pGTGKTt~i 221 (574)
T 3e1s_A 198 LDQLAG--HRLVVLTGGPGTGKSTTT 221 (574)
T ss_dssp HHHHTT--CSEEEEECCTTSCHHHHH
T ss_pred HHHHHh--CCEEEEEcCCCCCHHHHH
Confidence 344443 356778999999999987
No 235
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=26.22 E-value=13 Score=38.22 Aligned_cols=18 Identities=56% Similarity=0.728 Sum_probs=15.9
Q ss_pred ceeeeeccCCCCcceeec
Q 003413 298 GSVFCYGATGAGKTYTML 315 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM~ 315 (822)
..||..|..|+||||+|.
T Consensus 7 l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred EEEEEECCCCCcHHHHHH
Confidence 568999999999999983
No 236
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=26.10 E-value=15 Score=34.95 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=13.5
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|.-.|+.|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4567899999999876
No 237
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=26.02 E-value=29 Score=42.92 Aligned_cols=21 Identities=38% Similarity=0.714 Sum_probs=19.2
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
++.|-||+..|.+|||||.+.
T Consensus 143 ~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999763
No 238
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=26.00 E-value=17 Score=35.91 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=9.4
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999999876
No 239
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=25.97 E-value=24 Score=37.06 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=14.9
Q ss_pred CCceeeeeccCCCCcceee
Q 003413 296 RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 296 yN~tIfAYGQTGSGKTyTM 314 (822)
....|.-.|.+|||||+.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp SCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3445677899999999865
No 240
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=25.95 E-value=23 Score=42.68 Aligned_cols=25 Identities=40% Similarity=0.456 Sum_probs=18.2
Q ss_pred HHHHHcCCCceeeeeccCCCCcceeec
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
|..++.+ ..++..|+.|||||+|+.
T Consensus 365 v~~~l~~--~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 365 VKTVLQR--PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp HHHHHTS--SEEEEECCTTSCHHHHHH
T ss_pred HHHhccC--CeEEEEcCCCCCHHHHHH
Confidence 3444442 456789999999999974
No 241
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=25.88 E-value=22 Score=36.47 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=15.4
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..++.||+.|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 58999999999999876
No 242
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=25.80 E-value=19 Score=41.83 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=17.5
Q ss_pred CCceeeeeccCCCCcceeec
Q 003413 296 RNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 296 yN~tIfAYGQTGSGKTyTM~ 315 (822)
.++.++..|..|||||+||.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 46778889999999999985
No 243
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=25.55 E-value=22 Score=42.86 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=18.0
Q ss_pred HHHHHcCCCceeeeeccCCCCcceeec
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTML 315 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM~ 315 (822)
|..++. +..++..|+.|||||+|+.
T Consensus 369 v~~~l~--~~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 369 VSHVLQ--RPLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp HHHHTT--CSEEEEECSTTSSHHHHHH
T ss_pred HHHHhc--CCCEEEECCCCCCHHHHHH
Confidence 344443 3356789999999999974
No 244
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=25.46 E-value=3.9e+02 Score=26.28 Aligned_cols=24 Identities=4% Similarity=0.268 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 646 GFRELQQTVKTLEAEIEKMKKDHA 669 (822)
Q Consensus 646 ~~~el~~~~k~le~ele~~~~~~~ 669 (822)
.++++.+++.++..++...+-+..
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R~k~~ 137 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQRVKRD 137 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666665554444
No 245
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=25.45 E-value=16 Score=34.39 Aligned_cols=16 Identities=31% Similarity=0.329 Sum_probs=13.6
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5678999999999765
No 246
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=25.44 E-value=16 Score=39.10 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=15.7
Q ss_pred HHcCCCceeeeeccCCCCcceee
Q 003413 292 VLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 292 vL~GyN~tIfAYGQTGSGKTyTM 314 (822)
+-.|. .+...|+||||||.++
T Consensus 168 i~~g~--~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGK--NVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTC--CEEEEESTTSCHHHHH
T ss_pred ccCCC--EEEEECCCCCCHHHHH
Confidence 33565 4566799999999876
No 247
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=25.30 E-value=30 Score=41.73 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=19.5
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
++.|-||+..|.+|||||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 689999999999999999875
No 248
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=25.21 E-value=31 Score=41.64 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.7
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
++.|-||+.-|.+|||||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 799999999999999999875
No 249
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=25.13 E-value=1.4e+02 Score=21.28 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 567 LLELQKENRELRVQMARQQQRLLAL 591 (822)
Q Consensus 567 i~eLq~Ei~~Lr~eL~~~q~~i~~l 591 (822)
|..|.+|+..|+++++.+.-++..+
T Consensus 4 iaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555554444333
No 250
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=24.89 E-value=16 Score=35.60 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.2
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
++.-.|++|||||.++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999876
No 251
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=24.84 E-value=15 Score=41.50 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=17.6
Q ss_pred HHHHHcCCCceeeeeccCCCCcceee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
|..+++|.+ ++..++||||||.+.
T Consensus 34 i~~il~g~d--~lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 34 IDTVLSGRD--CLVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHHcCCC--EEEECCCCcHHHHHH
Confidence 445667876 456679999999754
No 252
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=24.79 E-value=28 Score=42.27 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=19.7
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
++.|-||+..|.+|||||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 699999999999999999885
No 253
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=24.77 E-value=19 Score=33.70 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.1
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|+..|..|||||+..
T Consensus 4 ~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35888999999998754
No 254
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.72 E-value=1.2e+02 Score=24.34 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 566 LLLELQKENRELRVQMARQQQRLLALEAQ 594 (822)
Q Consensus 566 li~eLq~Ei~~Lr~eL~~~q~~i~~le~q 594 (822)
.+..|+.|+.+|+.+++.+..++..+.++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888877777666654
No 255
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=23.92 E-value=21 Score=33.18 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=13.6
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999998764
No 256
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=23.90 E-value=23 Score=34.19 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=15.1
Q ss_pred CCceeeeeccCCCCcceee
Q 003413 296 RNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 296 yN~tIfAYGQTGSGKTyTM 314 (822)
-...|...|.+|||||+.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456778899999999765
No 257
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=23.85 E-value=21 Score=34.43 Aligned_cols=16 Identities=44% Similarity=0.519 Sum_probs=13.7
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+..|.+|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788999999998764
No 258
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=23.83 E-value=33 Score=42.50 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=16.7
Q ss_pred HHHHHcCCCceeeeeccCCCCcce
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTY 312 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTy 312 (822)
+..+++|.| +++.++||||||.
T Consensus 65 i~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 65 AKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHhCCC--EEEEcCCCCCHHH
Confidence 445667865 5778899999994
No 259
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=23.82 E-value=17 Score=38.24 Aligned_cols=17 Identities=47% Similarity=0.759 Sum_probs=14.4
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|...|++|+|||+|+
T Consensus 106 ~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35667899999999997
No 260
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=23.60 E-value=21 Score=32.74 Aligned_cols=16 Identities=13% Similarity=0.005 Sum_probs=13.3
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+..|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999998754
No 261
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=23.58 E-value=33 Score=42.25 Aligned_cols=23 Identities=48% Similarity=0.501 Sum_probs=17.4
Q ss_pred HHHHHcCCCceeeeeccCCCCccee
Q 003413 289 VEAVLQGRNGSVFCYGATGAGKTYT 313 (822)
Q Consensus 289 V~svL~GyN~tIfAYGQTGSGKTyT 313 (822)
|..++.|. .++..|+||||||.+
T Consensus 48 I~~il~g~--~vlv~apTGsGKTlv 70 (997)
T 4a4z_A 48 VYHLEQGD--SVFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHTTC--EEEEECCTTSCSHHH
T ss_pred HHHHHcCC--CEEEEECCCCcHHHH
Confidence 44556775 478899999999954
No 262
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=23.49 E-value=17 Score=36.00 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=13.0
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.+.-.|++|||||..+
T Consensus 25 ~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLI 40 (218)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999876
No 263
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=23.45 E-value=3.7e+02 Score=23.90 Aligned_cols=27 Identities=7% Similarity=0.227 Sum_probs=21.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 643 APEGFRELQQTVKTLEAEIEKMKKDHA 669 (822)
Q Consensus 643 ~ee~~~el~~~~k~le~ele~~~~~~~ 669 (822)
.++.+..|+.+++.++.++++....+.
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788899999999999988776544
No 264
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=23.44 E-value=20 Score=36.42 Aligned_cols=15 Identities=40% Similarity=0.490 Sum_probs=12.7
Q ss_pred eeeeeccCCCCccee
Q 003413 299 SVFCYGATGAGKTYT 313 (822)
Q Consensus 299 tIfAYGQTGSGKTyT 313 (822)
.|+..|++|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 467899999999874
No 265
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=23.42 E-value=26 Score=40.16 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=14.2
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
+|...|.+|||||.++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 5778899999999987
No 266
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=23.18 E-value=35 Score=42.51 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=24.5
Q ss_pred HhhhhHHHHHHHHH-cCCCceeeeeccCCCCcceee
Q 003413 280 VYSRTTADLVEAVL-QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 280 VF~~~v~pLV~svL-~GyN~tIfAYGQTGSGKTyTM 314 (822)
||. ++.....+++ .+.|-||+.-|.+|||||.+.
T Consensus 127 Ifa-iA~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 127 VFA-IADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HHH-HHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHH-HHHHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 664 3333333333 699999999999999999764
No 267
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=23.04 E-value=4.4e+02 Score=24.20 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 567 LLELQKENRELRVQMARQQQRLLA 590 (822)
Q Consensus 567 i~eLq~Ei~~Lr~eL~~~q~~i~~ 590 (822)
.++|+..+..|+.+++..+.++..
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~ 28 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEH 28 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554444433
No 268
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.68 E-value=1.6e+02 Score=27.59 Aligned_cols=36 Identities=11% Similarity=0.380 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 003413 652 QTVKTLEAEIEKMKKDHALQLKQKDDVIRELKRKSD 687 (822)
Q Consensus 652 ~~~k~le~ele~~~~~~~~ql~~k~~li~el~~~~~ 687 (822)
+++++|+.|++.+.+++....++++++++.+.....
T Consensus 92 ~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~ 127 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIE 127 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777677777777776666553
No 269
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=22.40 E-value=19 Score=35.39 Aligned_cols=16 Identities=44% Similarity=0.669 Sum_probs=13.8
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|.-.|++|+|||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 4667899999999987
No 270
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=22.40 E-value=22 Score=32.80 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=19.2
Q ss_pred HHHHHHc-CCCceeeeeccCCCCcceee
Q 003413 288 LVEAVLQ-GRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 288 LV~svL~-GyN~tIfAYGQTGSGKTyTM 314 (822)
++..++. .....|...|.+|+|||..+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 3334444 45667899999999998765
No 271
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=22.22 E-value=27 Score=33.10 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=15.9
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
.+....|.-.|.+|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 445567889999999998753
No 272
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=22.06 E-value=20 Score=33.48 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=14.0
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|+..|..|||||+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35778899999999865
No 273
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=22.00 E-value=23 Score=33.35 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=14.2
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|+..|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999854
No 274
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=21.88 E-value=17 Score=36.02 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=14.9
Q ss_pred eeeeeccCCCCcceeecc
Q 003413 299 SVFCYGATGAGKTYTMLG 316 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM~G 316 (822)
.++-||..|||||..+++
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 577899999999988743
No 275
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.80 E-value=1.6e+02 Score=28.32 Aligned_cols=37 Identities=11% Similarity=0.352 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 003413 651 QQTVKTLEAEIEKMKKDHALQLKQKDDVIRELKRKSD 687 (822)
Q Consensus 651 ~~~~k~le~ele~~~~~~~~ql~~k~~li~el~~~~~ 687 (822)
.+++++|+.|++.+.+++....++++++++.+...+.
T Consensus 91 ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~ 127 (151)
T 1yke_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIE 127 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777778887777777777888888877777764
No 276
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=21.69 E-value=24 Score=34.20 Aligned_cols=16 Identities=25% Similarity=0.520 Sum_probs=13.2
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+..|++|||||+.+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999998754
No 277
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=21.66 E-value=24 Score=33.09 Aligned_cols=16 Identities=44% Similarity=0.656 Sum_probs=13.5
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+..|..|||||+..
T Consensus 5 ~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999998753
No 278
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.60 E-value=3.1e+02 Score=31.54 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003413 567 LLELQKENRELRVQMARQQQR 587 (822)
Q Consensus 567 i~eLq~Ei~~Lr~eL~~~q~~ 587 (822)
-+.+.+.|++||.+|++.++.
T Consensus 59 ErDltkrINELKnqLEdlsKn 79 (562)
T 3ghg_A 59 NQDFTNRINKLKNSLFEYQKN 79 (562)
T ss_dssp HHHHHHHHHHHHHHHTHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhh
Confidence 344566667777777666544
No 279
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=21.59 E-value=52 Score=34.61 Aligned_cols=16 Identities=38% Similarity=0.567 Sum_probs=13.5
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|...|..|+|||+++
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999987
No 280
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=21.50 E-value=41 Score=35.43 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=22.5
Q ss_pred hhHHhhhhHHHHHHHHHcCC-CceeeeeccCCCCcceee
Q 003413 277 QHEVYSRTTADLVEAVLQGR-NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 277 QeeVF~~~v~pLV~svL~Gy-N~tIfAYGQTGSGKTyTM 314 (822)
|+++++. +...+-.|. ...++-||+.|+|||.+.
T Consensus 7 ~~~~~~~----l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 7 LRPDFEK----LVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp GHHHHHH----HHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred hHHHHHH----HHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 4455543 334444554 446899999999999875
No 281
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=21.42 E-value=30 Score=36.94 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=22.2
Q ss_pred HHHHHHHHHc-CC--CceeeeeccCCCCcceee
Q 003413 285 TADLVEAVLQ-GR--NGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 285 v~pLV~svL~-Gy--N~tIfAYGQTGSGKTyTM 314 (822)
+-+-++.++. |+ ...+..||++|||||..+
T Consensus 107 G~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 107 GSQEFDKLLGGGIESMAITEAFGEFRTGKTQLS 139 (343)
T ss_dssp SCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHH
T ss_pred CChhHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3455788886 43 345789999999999875
No 282
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=21.22 E-value=20 Score=36.62 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=17.0
Q ss_pred cCCCceeeeeccCCCCcceee
Q 003413 294 QGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 294 ~GyN~tIfAYGQTGSGKTyTM 314 (822)
.|+...|+..|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 588899999999999998654
No 283
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=21.19 E-value=27 Score=38.66 Aligned_cols=15 Identities=27% Similarity=0.171 Sum_probs=13.0
Q ss_pred eeeeeccCCCCccee
Q 003413 299 SVFCYGATGAGKTYT 313 (822)
Q Consensus 299 tIfAYGQTGSGKTyT 313 (822)
.++..|+||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 467789999999987
No 284
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=21.13 E-value=30 Score=38.01 Aligned_cols=16 Identities=31% Similarity=0.200 Sum_probs=13.8
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4688999999999874
No 285
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=20.87 E-value=27 Score=32.83 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=13.5
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+..|..|||||+..
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999998753
No 286
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=20.82 E-value=23 Score=33.22 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=13.3
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
..+-+|++|||||..|
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3567999999999876
No 287
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.80 E-value=1.9e+02 Score=24.64 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003413 646 GFRELQQTVKTLEAEIEKMKKDHALQLKQKDDVI 679 (822)
Q Consensus 646 ~~~el~~~~k~le~ele~~~~~~~~ql~~k~~li 679 (822)
+....+..+..+|.++..++.+++.++.+...++
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 39 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELL 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788889999999999998887777666554
No 288
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=20.63 E-value=24 Score=38.02 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.8
Q ss_pred HHHcCCCceeeeeccCCCCcceee
Q 003413 291 AVLQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 291 svL~GyN~tIfAYGQTGSGKTyTM 314 (822)
.+..|++..|...|.+|+|||..+
T Consensus 31 ~~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 31 SVKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHHCCEECEEECCCTTSCHHHHH
T ss_pred eecCCCCEEEEEEcCCCCCHHHHH
Confidence 456899999999999999999754
No 289
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=20.60 E-value=26 Score=38.64 Aligned_cols=20 Identities=30% Similarity=0.262 Sum_probs=15.3
Q ss_pred HcCCCceeeeeccCCCCcceee
Q 003413 293 LQGRNGSVFCYGATGAGKTYTM 314 (822)
Q Consensus 293 L~GyN~tIfAYGQTGSGKTyTM 314 (822)
++|.| ++..|+||||||...
T Consensus 6 ~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 6 KKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp STTCE--EEECCCTTSSTTTTH
T ss_pred hCCCC--EEEEcCCCCCHHHHH
Confidence 34554 578899999999884
No 290
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=20.50 E-value=3.9e+02 Score=22.64 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=21.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 643 APEGFRELQQTVKTLEAEIEKMKKDHA 669 (822)
Q Consensus 643 ~ee~~~el~~~~k~le~ele~~~~~~~ 669 (822)
.++.+..++.+++.++.++++....+.
T Consensus 39 ~E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 39 LEDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888889999988888776544
No 291
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=20.48 E-value=26 Score=32.73 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=13.3
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+..|..|||||+..
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998754
No 292
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.40 E-value=5.2e+02 Score=24.10 Aligned_cols=101 Identities=13% Similarity=0.089 Sum_probs=51.6
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCCCccCchhhhhhhhccCCCceeeEEEee-CCCCCCHHHHHHHH--HHHHHhhhhhccc
Q 003413 470 NINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANI-SPCNLSFGETQNTL--HWADRAKEIRTKE 546 (822)
Q Consensus 470 ~INkSLsaLg~VI~ALa~~~~hIPYRdSKLTrLLqDSLGGnskT~mIa~I-SPs~~~~eETLsTL--rFA~Rak~Iknk~ 546 (822)
.||.-...+.++|..|.....+.||-+.- +. . ++. .. .|....|..++.-| .+..++|.|..-
T Consensus 11 ~ldqla~~f~nsig~Lq~~a~p~~~~~~~-~~-----~-~~~------~~~~~~~~~f~~~~~ela~dli~k~kqIe~L- 76 (132)
T 1ykh_B 11 CLDQMTEQFCATLNYIDKNHGFERLTVNE-PQ-----M-SDK------HATVVPPEEFSNTIDELSTDIILKTRQINKL- 76 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCC----------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccCCCCC-CC-----C-CCc------cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 46777777888888887766665553200 00 0 000 00 11122233333322 234445665421
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 547 GEANEETLQVPDSGTDQAKLLLELQKENRELRVQMARQQQR 587 (822)
Q Consensus 547 ~~~ne~~~~~~~~~~d~~~li~eLq~Ei~~Lr~eL~~~q~~ 587 (822)
.+.-........++...|.+|++|+++...++.+.-++
T Consensus 77 ---IdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e 114 (132)
T 1ykh_B 77 ---IDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKK 114 (132)
T ss_dssp ---HHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112234556788899999999999888888665443
No 293
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=20.39 E-value=5.4e+02 Score=24.21 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003413 566 LLLELQKENRELRVQMARQQQR 587 (822)
Q Consensus 566 li~eLq~Ei~~Lr~eL~~~q~~ 587 (822)
.+.++.+|+..|+.+|...+.+
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k 104 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIK 104 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555544444433
No 294
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=20.33 E-value=5.1e+02 Score=25.93 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 564 AKLLLELQKENRELRVQMARQQQRLLALEAQ 594 (822)
Q Consensus 564 ~~li~eLq~Ei~~Lr~eL~~~q~~i~~le~q 594 (822)
..++..|+.|+..|.++|+..+.++..++.+
T Consensus 19 d~LV~~L~~En~~L~~ql~~k~~ei~~L~~q 49 (190)
T 4emc_A 19 DLLVANLVNENFVLSEKLDTKATEIKQLQKQ 49 (190)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999998766666555543
No 295
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=20.24 E-value=26 Score=32.36 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=13.3
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+..|..|||||+..
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4788999999998753
No 296
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=20.23 E-value=27 Score=41.73 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=12.8
Q ss_pred eeeeeccCCCCccee
Q 003413 299 SVFCYGATGAGKTYT 313 (822)
Q Consensus 299 tIfAYGQTGSGKTyT 313 (822)
.++..|+||||||..
T Consensus 111 ~vii~gpTGSGKTtl 125 (773)
T 2xau_A 111 IMVFVGETGSGKTTQ 125 (773)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 467889999999993
No 297
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=20.12 E-value=59 Score=36.38 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.4
Q ss_pred ceeeeeccCCCCcceee
Q 003413 298 GSVFCYGATGAGKTYTM 314 (822)
Q Consensus 298 ~tIfAYGQTGSGKTyTM 314 (822)
..|+..|.+|+|||+|+
T Consensus 98 ~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp EEEEECCCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45677799999999987
No 298
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=20.09 E-value=27 Score=33.33 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=13.6
Q ss_pred eeeeeccCCCCcceee
Q 003413 299 SVFCYGATGAGKTYTM 314 (822)
Q Consensus 299 tIfAYGQTGSGKTyTM 314 (822)
.|+-.|..|||||+..
T Consensus 12 ~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 12 NILITGTPGTGKTSMA 27 (184)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999998753
No 299
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=20.04 E-value=4.8e+02 Score=23.46 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003413 566 LLLELQKENRELRVQMARQQQRLLALEAQ 594 (822)
Q Consensus 566 li~eLq~Ei~~Lr~eL~~~q~~i~~le~q 594 (822)
.|.+|++|+.....+|.-.++++...+.+
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~ 34 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERA 34 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999998888776655
No 300
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=20.01 E-value=26 Score=41.40 Aligned_cols=44 Identities=30% Similarity=0.512 Sum_probs=25.1
Q ss_pred HcCCCceeeeeccCCCCcceeeccc--CCCCchH--H--HHHHHHHHhhhhc
Q 003413 293 LQGRNGSVFCYGATGAGKTYTMLGT--IENPGVM--V--LAIKDLFTKIRQR 338 (822)
Q Consensus 293 L~GyN~tIfAYGQTGSGKTyTM~G~--~e~~GII--p--Ral~~LF~~i~~~ 338 (822)
++|. .|+..|+||||||+.++-. ....|++ | -.+.++++.+...
T Consensus 153 l~rk--~vlv~apTGSGKT~~al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~ 202 (677)
T 3rc3_A 153 MQRK--IIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAA 202 (677)
T ss_dssp SCCE--EEEEECCTTSSHHHHHHHHHHHSSSEEEEESSHHHHHHHHHHHHHT
T ss_pred cCCC--EEEEEcCCCCCHHHHHHHHHHhcCCeEEEeCHHHHHHHHHHHHHhc
Confidence 4453 5788999999999843211 0123332 2 2456667666553
Done!