BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003415
(822 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|B Chain B, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 315
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 111/216 (51%), Gaps = 6/216 (2%)
Query: 44 NRLQAAAVAFG-EKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMV 102
N+LQ G + L +P+IV +G QS GKSS+LE ++G F R + TRRPLILQ+
Sbjct: 8 NKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLT 67
Query: 103 HDPTALDPRCRFQE--EDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRA 160
H P A D + QE E + S I + I T+ + K K +S +PI ++
Sbjct: 68 HLPIA-DDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNK-GISAQPINLKI 125
Query: 161 EYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS 220
H NLT++D PG +P + +I MV + + I+V + ++ + +S
Sbjct: 126 YSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANS 185
Query: 221 LWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRWEV 256
L +E+DP +RT+ V++K D + + +D EV
Sbjct: 186 DALQLAKEVDPEGKRTIGVITKLD-LMDKGTDAMEV 220
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 10/203 (4%)
Query: 44 NRLQAAAVAFGEK--LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQM 101
NRLQ A A G+ L +P+I +GGQS GKSS+LE +G F R + TRRPL+LQ+
Sbjct: 34 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL 93
Query: 102 VHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAE 161
V+ T + + ++ + A D + T +SP PI +R
Sbjct: 94 VNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG--------TNKGISPVPINLRVY 145
Query: 162 YAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL 221
H NLT++D PG +P + +I M+ + + +++ + ++ + +S
Sbjct: 146 SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 205
Query: 222 WLDAIREIDPTFRRTVIVVSKFD 244
L +E+DP +RT+ V++K D
Sbjct: 206 ALKIAKEVDPQGQRTIGVITKLD 228
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 10/203 (4%)
Query: 44 NRLQAAAVAFGEK--LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQM 101
NRLQ A A G+ L +P+I +GGQS GKSS+LE +G F R + TRRPL+LQ+
Sbjct: 11 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL 70
Query: 102 VHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAE 161
V+ T + + ++ + A D + T +SP PI +R
Sbjct: 71 VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG--------TNKGISPVPINLRVY 122
Query: 162 YAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL 221
H NLT++D PG +P + +I M+ + + +++ + ++ + +S
Sbjct: 123 SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 182
Query: 222 WLDAIREIDPTFRRTVIVVSKFD 244
L +E+DP +RT+ V++K D
Sbjct: 183 ALKVAKEVDPQGQRTIGVITKLD 205
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 120/232 (51%), Gaps = 20/232 (8%)
Query: 44 NRLQAAAVAFGEK--LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQM 101
NRLQ A A G+ L +P+I +GGQS GKSS+LE +G F R + TRRPL+LQ+
Sbjct: 14 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL 73
Query: 102 VHDPT--ALDPRCRFQE-EDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVM 158
V+ T A C+ ++ D EE + I++ T+ + T +SP PI +
Sbjct: 74 VNATTEYAEFLHCKGKKFTDFEE----------VRLEIEAETDRV-TGTNKGISPVPINL 122
Query: 159 RAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWC 218
R H NLT++D PG +P + +I M+ + + +++ + ++ +
Sbjct: 123 RVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA 182
Query: 219 SSLWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRWEV--DRYLSA-SGYLG 267
+S L +E+DP +RT+ V++K D + E +D +V ++ L GY+G
Sbjct: 183 NSDALKVAKEVDPQGQRTIGVITKLD-LMDEGTDARDVLENKLLPLRRGYIG 233
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 121/236 (51%), Gaps = 20/236 (8%)
Query: 44 NRLQAAAVAFGEK--LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQM 101
NRLQ A A G+ L +P+I +GGQS GKSS+LE +G F R + TRRPL+LQ+
Sbjct: 9 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL 68
Query: 102 VHDPT--ALDPRCRFQE-EDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVM 158
V+ T A C+ ++ D EE + I++ T+ + T +SP PI +
Sbjct: 69 VNSTTEYAEFLHCKGKKFTDFEE----------VRLEIEAETDRV-TGTNKGISPVPINL 117
Query: 159 RAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWC 218
R H NLT++D PG +P + +I M+ + + +++ + ++ +
Sbjct: 118 RVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA 177
Query: 219 SSLWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRWEV--DRYLSA-SGYLGENTR 271
+S L +E+DP +RT+ V++K D + E +D +V ++ L GY+G R
Sbjct: 178 NSDALKIAKEVDPQGQRTIGVITKLD-LMDEGTDARDVLENKLLPLRRGYIGVVNR 232
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 16/206 (7%)
Query: 44 NRLQAAAVAFGEK--LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQM 101
NRLQ A A G+ L +P+I +GGQS GKSS+LE +G F R + TRRPL+LQ+
Sbjct: 14 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL 73
Query: 102 VHDPT--ALDPRCRFQE-EDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVM 158
V+ T A C+ ++ D EE V L I++ T+ + T +SP PI +
Sbjct: 74 VNATTEYAEFLHCKGKKFTDFEE----VRLE------IEAETDR-VTGTNKGISPVPINL 122
Query: 159 RAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWC 218
R H NLT++D PG +P + +I + + + +++ + ++ +
Sbjct: 123 RVYSPHVLNLTLVDLPGXTKVPVGDQPPDIEFQIRDXLXQFVTKENCLILAVSPANSDLA 182
Query: 219 SSLWLDAIREIDPTFRRTVIVVSKFD 244
+S L +E+DP +RT+ V++K D
Sbjct: 183 NSDALKVAKEVDPQGQRTIGVITKLD 208
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 88/348 (25%), Positives = 158/348 (45%), Gaps = 46/348 (13%)
Query: 44 NRLQAAAVAFGEK-----LP-----IPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGT 93
N++Q A A G+ LP +P I +GGQS GKSS+LE+++G F R + T
Sbjct: 9 NKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68
Query: 94 RRPLILQM--VHDPT------ALDPRCRFQEEDSEEYGSPVVLASAIADIIKSRTEALLK 145
RRPL+LQ+ + D T PR +F + +A+ I+ T+
Sbjct: 69 RRPLVLQLQKIDDGTREYAEFLHLPRKKFTD------------FAAVRKEIQDETDRETG 116
Query: 146 KTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHR 205
++K ++S PI + + NLT+ID PG A G+ ++ +I +MV+S P+
Sbjct: 117 RSK-AISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNC 175
Query: 206 ILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRWEVDRYLSASGY 265
I++ + ++ + +S + RE+DP+ RT V++K D + + +D E+ G
Sbjct: 176 IILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID-LMDKGTDAVEI-----LEGR 229
Query: 266 LGENTRPFFVALPKDRNTVSNDEFRRQISQVDVEVLRHL-RDGIKGGYDEEKFKPYIGFG 324
+ P+ + + + ++ + VD+ R R+ + +G
Sbjct: 230 SFKLKYPWVGVVNRSQADINKN--------VDMIAARKREREYFSNTTEYRHLANKMGSE 281
Query: 325 CLRDYLESELQKRYKEAAPATLALLEQRCNEVTTEMSRMDSKIQATSD 372
L L L++ K P +L+ + E+ TE+SR+ I +D
Sbjct: 282 HLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRLGKPIAHGTD 329
>pdb|3L43|A Chain A, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|B Chain B, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|C Chain C, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|D Chain D, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
Length = 319
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 101/203 (49%), Gaps = 10/203 (4%)
Query: 44 NRLQAAAVAFGEK--LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQM 101
NRLQ A A G+ L +P+I +GGQS GKSS+LE +G F R + TRRPL+LQ+
Sbjct: 27 NRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL 86
Query: 102 VHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAE 161
+ T+ F +++ + I++ T+ + K +S PI +R
Sbjct: 87 I---TSKAEYAEFLHCKGKKFTD----FDEVRLEIEAETDRVTGMNK-GISSIPINLRVY 138
Query: 162 YAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL 221
H NLT+ID PG +P + +I M+ + + +++ + ++ + +S
Sbjct: 139 SPHVLNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAVTPANTDLANSD 198
Query: 222 WLDAIREIDPTFRRTVIVVSKFD 244
L +E+DP RT+ V++K D
Sbjct: 199 ALKLAKEVDPQGLRTIGVITKLD 221
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 5/195 (2%)
Query: 50 AVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALD 109
A+ + L +P I +G QS GKSS+LEAL G R + TR PL+L++
Sbjct: 61 ALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDK 119
Query: 110 PRCRFQEEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLT 169
R + +D Y + AS + I A+ + +S + I + P+LT
Sbjct: 120 WRGKVSYQD---YEIEISDASEVEKEINKAQNAIAGEG-MGISHELITLEISSRDVPDLT 175
Query: 170 IIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREI 229
+ID PG A +P + +I +++K I + + S+V+ ++ L +E+
Sbjct: 176 LIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV 235
Query: 230 DPTFRRTVIVVSKFD 244
DP RT+ +++K D
Sbjct: 236 DPEGDRTIGILTKPD 250
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 5/195 (2%)
Query: 50 AVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALD 109
A+ + L +P I +G QS GKSS+LEAL G R + TR PL+L++
Sbjct: 36 ALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDK 94
Query: 110 PRCRFQEEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLT 169
R + +D Y + AS + I A+ + +S + I + P+LT
Sbjct: 95 WRGKVSYQD---YEIEISDASEVEKEINKAQNAIAGEG-MGISHELITLEISSRDVPDLT 150
Query: 170 IIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREI 229
+ID PG A +P + +I +++K I + + S+V+ ++ L +E+
Sbjct: 151 LIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV 210
Query: 230 DPTFRRTVIVVSKFD 244
DP RT+ +++K D
Sbjct: 211 DPEGDRTIGILTKPD 225
>pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|B Chain B, Rnap At 3.2ang
pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 1131
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 499 WFAPLLDTACD-------RLAFVLGNLFDIALERHCNQDSE-YGNKTGNMDGYVSFHASL 550
+F P L T+ D LA+ + + ++ L R D + Y NK + G + F +
Sbjct: 299 YFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDL-FASLF 357
Query: 551 RQAYNRFVKDLSKQCKQ 567
R A+ FVKDL+ Q ++
Sbjct: 358 RVAFKAFVKDLTYQLEK 374
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 260 LSASGYLG----ENTRPFFVALPKDRNTVSNDEFRRQISQVDVEVLRH 303
L GYL E P ++ P++ N S D+ RRQ S VD + LR+
Sbjct: 517 LGGDGYLNFMGNEFGHPEWIDFPREGNNWSYDKCRRQWSLVDTDHLRY 564
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 260 LSASGYLG----ENTRPFFVALPKDRNTVSNDEFRRQISQVDVEVLRH 303
L GYL E P ++ P++ N S D+ RRQ S VD + LR+
Sbjct: 517 LGGDGYLNFMGNEFGHPEWIDFPREGNNWSYDKCRRQWSLVDTDHLRY 564
>pdb|3LG6|A Chain A, Crystal Structure Of Putative Glutathione Transferase From
Coccidioides Immitis
pdb|3LG6|B Chain B, Crystal Structure Of Putative Glutathione Transferase From
Coccidioides Immitis
pdb|3LG6|C Chain C, Crystal Structure Of Putative Glutathione Transferase From
Coccidioides Immitis
pdb|3LG6|D Chain D, Crystal Structure Of Putative Glutathione Transferase From
Coccidioides Immitis
pdb|3N5O|A Chain A, Crystal Structure Of Putative Glutathione Transferase From
Coccidioides Immitis Bound To Glutathione
pdb|3N5O|B Chain B, Crystal Structure Of Putative Glutathione Transferase From
Coccidioides Immitis Bound To Glutathione
Length = 235
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 224 DAIREIDPTFRRTVIVVSKFDNRLKEFSDRWEVDRYLSASGYLGE----NTRPFFVALPK 279
D + ++PT ++VVS +N + S + + + L+A YL E N RP LP
Sbjct: 50 DTYKSLNPTNTVPLLVVSNINNTVSPSSASFSIGQSLAALEYLEEALPTNARPL---LPP 106
Query: 280 DRNTVSNDEFRR--QISQVDVEVLRHLR 305
N V+ R I DV+ + +L+
Sbjct: 107 ISNPVARAHVRTICNIIACDVQPVTNLK 134
>pdb|4H9N|A Chain A, Complex Structure 1 Of DaxxH3.3(SUB5)H4
pdb|4H9Q|A Chain A, Complex Structure 4 Of Daxx(E225a)H3.3(SUB5)H4
Length = 135
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 225 AIREIDPTFRRTVIVVSK--FDNRLKEFSDRWEVD-RYLSAS-GYLGENTRPFFVALPKD 280
A+REI + T +++ K F ++E + ++ D R+ SA+ G L E F VAL +D
Sbjct: 47 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAFLVALFED 106
Query: 281 RNTVSNDEFRRQISQVDVEVLRHLR 305
N + R I D+++ R +R
Sbjct: 107 TNLCTIHAKRVTIFPKDIQLARRIR 131
>pdb|4H9S|A Chain A, Complex Structure 6 Of DaxxH3.3(SUB7)H4
pdb|4H9S|B Chain B, Complex Structure 6 Of DaxxH3.3(SUB7)H4
Length = 135
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 225 AIREIDPTFRRTVIVVSK--FDNRLKEFSDRWEVD-RYLSAS-GYLGENTRPFFVALPKD 280
A+REI + T +++ K F ++E ++ D R+ SA+ G L E F VAL +D
Sbjct: 47 ALREIRRYQKSTELLIRKLPFQRLVREICQDFKTDLRWQSAAIGALQEAAEAFLVALFED 106
Query: 281 RNTVSNDEFRRQISQVDVEVLRHLR 305
N + R I D+++ R +R
Sbjct: 107 TNLCTIHAKRVTIFPKDIQLARRIR 131
>pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.3
Length = 139
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 225 AIREIDPTFRRTVIVVSK--FDNRLKEFSDRWEVD-RYLSAS-GYLGENTRPFFVALPKD 280
A+REI + T +++ K F ++E + ++ D R+ SA+ G L E + + V L +D
Sbjct: 51 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFED 110
Query: 281 RNTVSNDEFRRQISQVDVEVLRHLR 305
N + R I D+++ R +R
Sbjct: 111 TNLCAIHAKRVTIMPKDIQLARRIR 135
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex
Length = 525
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 298 VEVLRHLRDGIKGGYDEEKFKPYIGFGCLRD-YLESELQKRYKE 340
++V + R+G+ G KF P++ FGC+ ++ E+Q+ KE
Sbjct: 270 LKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKE 313
>pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana
pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana
Length = 525
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 298 VEVLRHLRDGIKGGYDEEKFKPYIGFGCLRD-YLESELQKRYKE 340
++V + R+G+ G KF P++ FGC+ ++ E+Q+ KE
Sbjct: 269 LKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKE 312
>pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis
Thaliana
pdb|2VTB|A Chain A, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|C Chain C, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|D Chain D, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|E Chain E, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|F Chain F, Structure Of Cryptochrome 3 - Dna Complex
Length = 526
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 298 VEVLRHLRDGIKGGYDEEKFKPYIGFGCLRD-YLESELQKRYKE 340
++V + R+G+ G KF P++ FGC+ ++ E+Q+ KE
Sbjct: 270 LKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKE 313
>pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In
Complex With Its Chaperone Daxx
Length = 136
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 225 AIREIDPTFRRTVIVVSK--FDNRLKEFSDRWEVD-RYLSAS-GYLGENTRPFFVALPKD 280
A+REI + T +++ K F ++E + ++ D R+ SA+ G L E + + V L +D
Sbjct: 48 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFED 107
Query: 281 RNTVSNDEFRRQISQVDVEVLRHLR 305
N + R I D+++ R +R
Sbjct: 108 TNLCAIHAKRVTIMPKDIQLARRIR 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,336,003
Number of Sequences: 62578
Number of extensions: 870048
Number of successful extensions: 1964
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1938
Number of HSP's gapped (non-prelim): 26
length of query: 822
length of database: 14,973,337
effective HSP length: 107
effective length of query: 715
effective length of database: 8,277,491
effective search space: 5918406065
effective search space used: 5918406065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)