Query 003415
Match_columns 822
No_of_seqs 285 out of 1495
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 23:00:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 6E-58 1.3E-62 536.6 37.3 644 37-821 5-656 (657)
2 smart00053 DYNc Dynamin, GTPas 100.0 8.1E-42 1.8E-46 358.6 22.7 228 37-282 5-233 (240)
3 KOG0447 Dynamin-like GTP bindi 100.0 2.2E-31 4.7E-36 293.6 25.3 293 37-346 282-584 (980)
4 PF01031 Dynamin_M: Dynamin ce 99.9 7.3E-23 1.6E-27 221.9 22.4 264 266-584 9-278 (295)
5 PF00350 Dynamin_N: Dynamin fa 99.8 2.3E-20 5.1E-25 183.9 17.6 168 62-243 1-168 (168)
6 COG0218 Predicted GTPase [Gene 99.5 2.8E-13 6.1E-18 137.8 16.0 123 58-247 23-149 (200)
7 PRK09866 hypothetical protein; 99.3 8.5E-10 1.9E-14 128.5 29.1 67 35-103 47-113 (741)
8 COG1159 Era GTPase [General fu 99.1 9.1E-10 2E-14 118.0 16.0 120 61-248 8-129 (298)
9 TIGR00436 era GTP-binding prot 99.1 2.5E-09 5.4E-14 114.9 18.6 117 61-246 2-120 (270)
10 PRK00089 era GTPase Era; Revie 99.1 3.7E-09 8.1E-14 114.4 19.1 74 166-246 53-126 (292)
11 PF02421 FeoB_N: Ferrous iron 99.1 3.9E-10 8.4E-15 112.0 10.1 75 166-250 47-122 (156)
12 TIGR03598 GTPase_YsxC ribosome 99.0 1.7E-09 3.7E-14 108.5 12.4 123 57-246 16-142 (179)
13 cd01853 Toc34_like Toc34-like 99.0 2.6E-09 5.6E-14 113.9 14.0 154 29-251 7-167 (249)
14 TIGR00991 3a0901s02IAP34 GTP-b 99.0 2E-09 4.4E-14 117.3 13.1 155 24-250 9-170 (313)
15 PF01926 MMR_HSR1: 50S ribosom 99.0 1.8E-09 3.9E-14 100.6 11.1 115 61-242 1-116 (116)
16 PRK00454 engB GTP-binding prot 99.0 3.2E-09 6.9E-14 107.1 11.9 122 58-246 23-148 (196)
17 TIGR03156 GTP_HflX GTP-binding 99.0 1.1E-08 2.5E-13 114.1 15.9 125 57-246 187-314 (351)
18 cd01852 AIG1 AIG1 (avrRpt2-ind 98.9 5.9E-09 1.3E-13 106.4 11.8 79 166-248 49-131 (196)
19 COG1160 Predicted GTPases [Gen 98.9 5.2E-09 1.1E-13 117.7 12.3 121 60-246 4-125 (444)
20 cd01878 HflX HflX subfamily. 98.9 3.8E-08 8.2E-13 100.5 15.2 125 57-246 39-166 (204)
21 cd04104 p47_IIGP_like p47 (47- 98.9 5.3E-08 1.2E-12 99.7 16.2 26 60-85 2-27 (197)
22 cd01887 IF2_eIF5B IF2/eIF5B (i 98.9 1.5E-08 3.3E-13 99.0 11.5 113 60-246 1-115 (168)
23 PRK11058 GTPase HflX; Provisio 98.9 2.9E-08 6.2E-13 113.6 15.3 125 57-246 195-322 (426)
24 cd04163 Era Era subfamily. Er 98.9 1.8E-08 3.9E-13 96.8 11.7 74 166-246 51-124 (168)
25 PRK12299 obgE GTPase CgtA; Rev 98.9 7.6E-08 1.6E-12 106.9 18.1 122 58-246 157-284 (335)
26 PRK12298 obgE GTPase CgtA; Rev 98.8 2.2E-08 4.7E-13 113.3 13.3 121 59-246 159-288 (390)
27 COG1160 Predicted GTPases [Gen 98.8 6.1E-08 1.3E-12 109.3 16.2 127 58-248 177-304 (444)
28 cd01876 YihA_EngB The YihA (En 98.8 1.8E-08 3.9E-13 97.2 10.1 76 167-246 46-123 (170)
29 cd01897 NOG NOG1 is a nucleola 98.8 4E-08 8.6E-13 96.3 12.0 26 60-85 1-26 (168)
30 PRK04213 GTP-binding protein; 98.8 5E-08 1.1E-12 99.3 12.2 125 56-246 6-143 (201)
31 COG3596 Predicted GTPase [Gene 98.8 1.5E-08 3.3E-13 107.6 8.5 124 58-249 37-164 (296)
32 COG0486 ThdF Predicted GTPase 98.8 8E-08 1.7E-12 108.6 14.6 143 37-248 195-339 (454)
33 PRK03003 GTP-binding protein D 98.8 5.2E-08 1.1E-12 113.0 13.4 121 57-246 36-159 (472)
34 cd01895 EngA2 EngA2 subfamily. 98.8 1E-07 2.2E-12 92.6 13.1 77 166-247 50-127 (174)
35 PRK15494 era GTPase Era; Provi 98.7 2.6E-07 5.7E-12 102.8 17.7 72 166-246 100-173 (339)
36 cd01898 Obg Obg subfamily. Th 98.7 7.4E-08 1.6E-12 94.4 11.3 75 166-247 48-128 (170)
37 TIGR03594 GTPase_EngA ribosome 98.7 6.5E-08 1.4E-12 110.2 12.5 71 167-246 48-120 (429)
38 COG1084 Predicted GTPase [Gene 98.7 1E-07 2.2E-12 103.5 12.6 125 55-246 164-293 (346)
39 cd00880 Era_like Era (E. coli 98.7 1E-07 2.2E-12 90.1 11.2 76 165-248 44-119 (163)
40 cd04171 SelB SelB subfamily. 98.7 1.1E-07 2.5E-12 92.1 11.6 65 166-246 51-117 (164)
41 cd04164 trmE TrmE (MnmE, ThdF, 98.7 1.9E-07 4.1E-12 89.6 12.9 73 166-247 49-121 (157)
42 PRK00093 GTP-binding protein D 98.7 1.2E-07 2.7E-12 108.3 13.4 124 58-246 172-297 (435)
43 cd00154 Rab Rab family. Rab G 98.7 2.3E-07 5E-12 88.4 13.1 67 166-246 49-118 (159)
44 PRK12297 obgE GTPase CgtA; Rev 98.7 1.3E-07 2.8E-12 107.9 13.1 118 58-245 157-286 (424)
45 cd01894 EngA1 EngA1 subfamily. 98.7 8.3E-08 1.8E-12 92.2 9.9 72 166-246 45-118 (157)
46 TIGR02729 Obg_CgtA Obg family 98.7 1.3E-07 2.8E-12 104.9 12.5 122 58-246 156-286 (329)
47 KOG1423 Ras-like GTPase ERA [C 98.7 1.8E-07 3.9E-12 100.4 12.7 123 60-246 73-198 (379)
48 cd01861 Rab6 Rab6 subfamily. 98.7 4.2E-07 9E-12 88.3 14.1 66 167-246 50-118 (161)
49 PRK00093 GTP-binding protein D 98.6 2E-07 4.3E-12 106.6 13.2 72 166-246 49-122 (435)
50 TIGR00993 3a0901s04IAP86 chlor 98.6 2.1E-07 4.5E-12 109.3 13.4 127 61-250 120-253 (763)
51 TIGR00450 mnmE_trmE_thdF tRNA 98.6 3.1E-07 6.8E-12 105.6 14.5 120 58-246 202-323 (442)
52 PF04548 AIG1: AIG1 family; I 98.6 1E-07 2.2E-12 99.0 9.6 121 61-248 2-131 (212)
53 PRK03003 GTP-binding protein D 98.6 1.7E-07 3.7E-12 108.6 12.3 124 58-246 210-335 (472)
54 cd00881 GTP_translation_factor 98.6 1.6E-07 3.5E-12 93.2 10.3 66 165-247 61-128 (189)
55 cd01866 Rab2 Rab2 subfamily. 98.6 7.1E-07 1.5E-11 88.2 14.4 115 60-246 5-122 (168)
56 TIGR03594 GTPase_EngA ribosome 98.6 2.7E-07 5.8E-12 105.2 12.9 75 167-246 221-296 (429)
57 PRK09518 bifunctional cytidyla 98.6 2.1E-07 4.6E-12 113.0 12.6 122 58-246 274-396 (712)
58 PRK12296 obgE GTPase CgtA; Rev 98.6 2.9E-07 6.2E-12 106.7 12.9 26 58-83 158-183 (500)
59 cd04165 GTPBP1_like GTPBP1-lik 98.6 6.8E-07 1.5E-11 93.9 14.2 70 163-246 81-151 (224)
60 cd01864 Rab19 Rab19 subfamily. 98.6 1E-06 2.2E-11 86.5 14.3 68 166-247 52-122 (165)
61 cd01868 Rab11_like Rab11-like. 98.6 9.4E-07 2E-11 86.5 14.0 67 166-246 52-121 (165)
62 PRK09518 bifunctional cytidyla 98.6 2.9E-07 6.2E-12 111.9 12.5 124 58-246 449-574 (712)
63 smart00175 RAB Rab subfamily o 98.6 9.5E-07 2.1E-11 85.8 13.4 67 167-247 50-119 (164)
64 cd01865 Rab3 Rab3 subfamily. 98.5 1.2E-06 2.5E-11 86.3 13.8 68 166-247 50-120 (165)
65 cd04142 RRP22 RRP22 subfamily. 98.5 1E-06 2.2E-11 90.6 13.7 25 61-85 2-26 (198)
66 PRK05291 trmE tRNA modificatio 98.5 8.8E-07 1.9E-11 102.2 14.7 71 166-246 263-334 (449)
67 cd04159 Arl10_like Arl10-like 98.5 8.5E-07 1.8E-11 84.7 12.2 67 166-246 44-114 (159)
68 cd01890 LepA LepA subfamily. 98.5 5.1E-07 1.1E-11 89.5 10.9 66 166-246 67-132 (179)
69 cd01879 FeoB Ferrous iron tran 98.5 6.5E-07 1.4E-11 86.4 11.3 70 166-246 43-114 (158)
70 cd04106 Rab23_lke Rab23-like s 98.5 1.4E-06 3.1E-11 84.6 13.5 67 166-247 51-120 (162)
71 cd04114 Rab30 Rab30 subfamily. 98.5 1.1E-06 2.3E-11 86.3 12.2 66 167-246 57-125 (169)
72 cd04119 RJL RJL (RabJ-Like) su 98.5 1.5E-06 3.3E-11 84.4 13.2 25 61-85 2-26 (168)
73 cd01867 Rab8_Rab10_Rab13_like 98.5 2E-06 4.3E-11 84.8 13.9 67 166-246 52-121 (167)
74 cd01862 Rab7 Rab7 subfamily. 98.5 1.7E-06 3.6E-11 84.9 13.2 25 61-85 2-26 (172)
75 cd01863 Rab18 Rab18 subfamily. 98.5 1.3E-06 2.8E-11 85.0 12.2 67 166-246 49-119 (161)
76 cd04157 Arl6 Arl6 subfamily. 98.5 1.4E-06 3E-11 84.6 12.5 67 166-246 45-117 (162)
77 cd01891 TypA_BipA TypA (tyrosi 98.5 8.5E-07 1.9E-11 90.1 11.4 67 165-246 64-130 (194)
78 cd01860 Rab5_related Rab5-rela 98.5 2.5E-06 5.4E-11 83.0 14.1 26 61-86 3-28 (163)
79 cd01881 Obg_like The Obg-like 98.5 5.2E-07 1.1E-11 88.7 9.2 21 64-84 1-21 (176)
80 cd04113 Rab4 Rab4 subfamily. 98.5 2.6E-06 5.5E-11 83.1 13.9 68 166-247 49-119 (161)
81 cd04112 Rab26 Rab26 subfamily. 98.5 2.5E-06 5.4E-11 86.5 14.1 66 167-246 51-119 (191)
82 cd04127 Rab27A Rab27a subfamil 98.5 7E-06 1.5E-10 81.6 17.1 28 59-86 4-31 (180)
83 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.5 2.9E-06 6.2E-11 83.3 14.0 66 167-246 52-120 (166)
84 cd04161 Arl2l1_Arl13_like Arl2 98.4 5.3E-06 1.1E-10 82.4 15.5 66 166-245 43-112 (167)
85 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.4 1.6E-06 3.6E-11 87.3 12.0 67 166-246 52-122 (183)
86 cd01850 CDC_Septin CDC/Septin. 98.4 1.7E-06 3.6E-11 93.8 12.8 26 61-86 6-31 (276)
87 cd04123 Rab21 Rab21 subfamily. 98.4 4E-06 8.6E-11 81.0 14.0 67 166-246 49-118 (162)
88 TIGR00491 aIF-2 translation in 98.4 1.2E-06 2.5E-11 104.1 12.3 131 57-246 2-134 (590)
89 cd04145 M_R_Ras_like M-Ras/R-R 98.4 2.8E-06 6.1E-11 82.6 12.7 67 166-246 50-120 (164)
90 KOG0448 Mitofusin 1 GTPase, in 98.4 1.9E-05 4.1E-10 92.5 21.3 169 59-256 109-284 (749)
91 cd04101 RabL4 RabL4 (Rab-like4 98.4 6.2E-06 1.3E-10 80.5 14.9 66 166-246 52-120 (164)
92 PF00009 GTP_EFTU: Elongation 98.4 1.2E-06 2.7E-11 88.7 10.2 80 150-246 53-135 (188)
93 KOG1191 Mitochondrial GTPase [ 98.4 1.4E-06 2.9E-11 98.8 11.1 138 58-261 267-417 (531)
94 cd04160 Arfrp1 Arfrp1 subfamil 98.4 2.2E-06 4.8E-11 83.9 11.4 68 165-246 49-120 (167)
95 PRK09554 feoB ferrous iron tra 98.4 2.9E-06 6.3E-11 103.6 14.8 74 166-246 50-125 (772)
96 cd04156 ARLTS1 ARLTS1 subfamil 98.4 3.1E-06 6.8E-11 82.2 12.1 67 166-246 44-114 (160)
97 cd00878 Arf_Arl Arf (ADP-ribos 98.4 2.6E-06 5.7E-11 82.7 11.4 67 166-246 43-113 (158)
98 cd04122 Rab14 Rab14 subfamily. 98.4 7.1E-06 1.5E-10 80.7 14.2 67 166-246 51-120 (166)
99 cd04166 CysN_ATPS CysN_ATPS su 98.4 1.6E-06 3.5E-11 89.6 10.1 80 150-246 62-143 (208)
100 cd01893 Miro1 Miro1 subfamily. 98.4 3.5E-06 7.5E-11 83.2 11.9 66 166-246 47-116 (166)
101 cd04139 RalA_RalB RalA/RalB su 98.4 6E-06 1.3E-10 80.0 13.4 69 166-247 48-119 (164)
102 cd04116 Rab9 Rab9 subfamily. 98.4 8.5E-06 1.8E-10 80.2 14.6 26 60-85 6-31 (170)
103 cd04154 Arl2 Arl2 subfamily. 98.4 3.3E-06 7.1E-11 83.9 11.8 67 166-246 58-128 (173)
104 cd04124 RabL2 RabL2 subfamily. 98.4 2.7E-06 5.9E-11 83.6 11.0 66 166-246 49-117 (161)
105 TIGR02528 EutP ethanolamine ut 98.4 4.8E-06 1.1E-10 79.6 12.4 24 61-84 2-25 (142)
106 cd04136 Rap_like Rap-like subf 98.4 5.3E-06 1.1E-10 80.6 12.8 26 60-85 2-27 (163)
107 smart00173 RAS Ras subfamily o 98.4 5E-06 1.1E-10 81.1 12.7 25 61-85 2-26 (164)
108 cd04110 Rab35 Rab35 subfamily. 98.4 1.8E-05 3.9E-10 80.9 17.3 65 167-246 56-123 (199)
109 cd01884 EF_Tu EF-Tu subfamily. 98.3 3.8E-06 8.2E-11 86.5 11.9 65 165-246 64-131 (195)
110 cd00879 Sar1 Sar1 subfamily. 98.3 8.1E-06 1.8E-10 82.1 13.9 29 57-85 17-45 (190)
111 cd04151 Arl1 Arl1 subfamily. 98.3 4.4E-06 9.4E-11 81.5 11.6 67 166-246 43-113 (158)
112 smart00178 SAR Sar1p-like memb 98.3 6.4E-06 1.4E-10 83.2 13.2 27 58-84 16-42 (184)
113 cd00876 Ras Ras family. The R 98.3 8E-06 1.7E-10 78.6 12.9 68 166-247 47-118 (160)
114 cd01886 EF-G Elongation factor 98.3 2.8E-06 6.1E-11 91.8 10.7 81 150-246 49-129 (270)
115 cd04175 Rap1 Rap1 subgroup. T 98.3 7.9E-06 1.7E-10 80.0 12.9 68 166-247 49-120 (164)
116 PF10662 PduV-EutP: Ethanolami 98.3 6.6E-06 1.4E-10 80.7 12.1 88 170-276 40-127 (143)
117 PF05049 IIGP: Interferon-indu 98.3 2.5E-05 5.5E-10 87.7 18.3 68 161-245 81-153 (376)
118 cd04138 H_N_K_Ras_like H-Ras/N 98.3 5.5E-06 1.2E-10 80.0 11.4 67 167-246 50-119 (162)
119 cd04168 TetM_like Tet(M)-like 98.3 2.2E-06 4.8E-11 90.8 9.3 72 157-246 56-129 (237)
120 cd04155 Arl3 Arl3 subfamily. 98.3 7.7E-06 1.7E-10 80.7 12.3 28 58-85 13-40 (173)
121 COG2262 HflX GTPases [General 98.3 1.3E-05 2.9E-10 89.6 14.9 129 55-248 188-319 (411)
122 CHL00189 infB translation init 98.3 4.8E-06 1E-10 100.8 12.3 117 58-246 243-360 (742)
123 cd04107 Rab32_Rab38 Rab38/Rab3 98.3 1.7E-05 3.7E-10 81.1 14.4 25 61-85 2-26 (201)
124 cd04162 Arl9_Arfrp2_like Arl9/ 98.3 7.4E-06 1.6E-10 81.1 11.3 25 61-85 1-25 (164)
125 PLN03110 Rab GTPase; Provision 98.2 1.5E-05 3.3E-10 82.8 14.1 67 166-246 61-130 (216)
126 cd04169 RF3 RF3 subfamily. Pe 98.2 4.1E-06 9E-11 90.3 10.2 74 157-246 63-136 (267)
127 cd04167 Snu114p Snu114p subfam 98.2 6E-06 1.3E-10 85.5 10.9 66 166-246 71-136 (213)
128 cd04115 Rab33B_Rab33A Rab33B/R 98.2 8.1E-06 1.8E-10 80.8 11.2 68 166-246 51-122 (170)
129 cd04111 Rab39 Rab39 subfamily. 98.2 1.9E-05 4.1E-10 81.9 14.4 26 60-85 3-28 (211)
130 cd00882 Ras_like_GTPase Ras-li 98.2 8.6E-06 1.9E-10 75.6 10.5 69 166-248 45-117 (157)
131 cd04108 Rab36_Rab34 Rab34/Rab3 98.2 1.2E-05 2.5E-10 80.3 12.1 67 166-246 49-119 (170)
132 TIGR00487 IF-2 translation ini 98.2 7.6E-06 1.7E-10 97.3 12.5 115 57-245 85-199 (587)
133 cd04125 RabA_like RabA-like su 98.2 2.2E-05 4.9E-10 79.1 14.2 67 166-246 49-118 (188)
134 PRK04004 translation initiatio 98.2 6.5E-06 1.4E-10 97.9 11.9 132 56-246 3-136 (586)
135 cd04170 EF-G_bact Elongation f 98.2 6.6E-06 1.4E-10 88.4 10.9 66 166-246 64-129 (268)
136 cd01889 SelB_euk SelB subfamil 98.2 6.2E-06 1.3E-10 83.7 10.1 65 165-246 67-133 (192)
137 PRK15467 ethanolamine utilizat 98.2 7.8E-06 1.7E-10 81.0 10.5 23 61-83 3-25 (158)
138 PTZ00369 Ras-like protein; Pro 98.2 4.6E-05 9.9E-10 77.2 16.3 26 60-85 6-31 (189)
139 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.2 1.3E-05 2.8E-10 80.0 12.0 67 166-246 59-129 (174)
140 KOG2486 Predicted GTPase [Gene 98.2 5E-06 1.1E-10 88.6 9.0 77 166-246 183-261 (320)
141 cd01896 DRG The developmentall 98.2 1.5E-05 3.3E-10 84.2 12.6 24 61-84 2-25 (233)
142 TIGR00231 small_GTP small GTP- 98.2 6.4E-06 1.4E-10 77.8 8.8 26 60-85 2-27 (161)
143 cd04118 Rab24 Rab24 subfamily. 98.2 1.1E-05 2.4E-10 81.4 11.1 65 167-246 51-118 (193)
144 PLN03118 Rab family protein; P 98.2 2.1E-05 4.5E-10 81.1 13.2 26 60-85 15-40 (211)
145 cd04149 Arf6 Arf6 subfamily. 98.2 1.9E-05 4.2E-10 78.6 12.5 67 166-246 53-123 (168)
146 PRK05306 infB translation init 98.2 8.4E-06 1.8E-10 99.4 11.7 65 166-245 337-401 (787)
147 cd04109 Rab28 Rab28 subfamily. 98.2 1.9E-05 4.2E-10 81.8 12.7 67 166-246 50-122 (215)
148 cd00157 Rho Rho (Ras homology) 98.2 9.5E-06 2.1E-10 79.5 9.9 25 61-85 2-26 (171)
149 PLN03108 Rab family protein; P 98.2 3.4E-05 7.3E-10 79.9 14.3 66 167-246 56-124 (210)
150 cd04176 Rap2 Rap2 subgroup. T 98.2 1.9E-05 4.1E-10 77.1 11.8 25 61-85 3-27 (163)
151 TIGR00475 selB selenocysteine- 98.1 9.8E-06 2.1E-10 96.4 11.4 65 166-247 50-117 (581)
152 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.1 3.5E-05 7.6E-10 77.0 13.7 67 166-246 50-120 (172)
153 cd01888 eIF2_gamma eIF2-gamma 98.1 2.1E-05 4.5E-10 81.1 12.4 23 61-83 2-24 (203)
154 cd04147 Ras_dva Ras-dva subfam 98.1 1.5E-05 3.2E-10 81.5 11.0 25 61-85 1-25 (198)
155 PLN03127 Elongation factor Tu; 98.1 1E-05 2.2E-10 93.4 10.7 130 56-246 58-190 (447)
156 cd04144 Ras2 Ras2 subfamily. 98.1 2.7E-05 5.9E-10 78.9 12.5 66 167-246 48-119 (190)
157 cd04137 RheB Rheb (Ras Homolog 98.1 3.3E-05 7.1E-10 76.9 12.9 25 61-85 3-27 (180)
158 cd04140 ARHI_like ARHI subfami 98.1 1.6E-05 3.5E-10 78.2 10.5 25 61-85 3-27 (165)
159 cd04146 RERG_RasL11_like RERG/ 98.1 2.5E-05 5.4E-10 76.6 11.3 25 61-85 1-25 (165)
160 CHL00071 tufA elongation facto 98.1 1.3E-05 2.8E-10 91.6 10.5 66 165-247 74-142 (409)
161 cd04177 RSR1 RSR1 subgroup. R 98.1 3.9E-05 8.4E-10 75.7 12.6 68 166-247 49-120 (168)
162 TIGR01393 lepA GTP-binding pro 98.1 2.2E-05 4.7E-10 93.7 12.3 66 166-246 70-135 (595)
163 cd04120 Rab12 Rab12 subfamily. 98.1 3.4E-05 7.4E-10 79.8 12.3 67 166-246 49-118 (202)
164 cd01900 YchF YchF subfamily. 98.1 1.3E-05 2.9E-10 86.7 9.6 37 62-98 1-37 (274)
165 TIGR00484 EF-G translation elo 98.1 1.4E-05 2.9E-10 97.1 10.5 81 150-246 60-140 (689)
166 smart00174 RHO Rho (Ras homolo 98.1 1.8E-05 3.9E-10 78.1 9.4 24 62-85 1-24 (174)
167 COG0370 FeoB Fe2+ transport sy 98.1 1.1E-05 2.4E-10 95.1 9.1 74 166-250 50-125 (653)
168 cd01885 EF2 EF2 (for archaea a 98.0 2.6E-05 5.6E-10 82.0 10.9 67 165-246 72-138 (222)
169 cd04105 SR_beta Signal recogni 98.0 8.1E-05 1.8E-09 76.9 14.4 26 60-85 1-26 (203)
170 cd04150 Arf1_5_like Arf1-Arf5- 98.0 5.3E-05 1.2E-09 74.6 12.4 67 166-246 44-114 (159)
171 cd04132 Rho4_like Rho4-like su 98.0 4.5E-05 9.8E-10 76.5 12.1 25 61-85 2-26 (187)
172 cd04158 ARD1 ARD1 subfamily. 98.0 3.2E-05 6.9E-10 76.7 10.8 25 61-85 1-25 (169)
173 PLN03126 Elongation factor Tu; 98.0 5.6E-05 1.2E-09 88.0 13.5 66 165-247 143-211 (478)
174 cd01883 EF1_alpha Eukaryotic e 98.0 3.8E-05 8.2E-10 80.1 10.9 80 150-246 62-150 (219)
175 cd04117 Rab15 Rab15 subfamily. 98.0 0.00013 2.9E-09 71.7 14.1 67 166-246 49-118 (161)
176 PRK12739 elongation factor G; 98.0 1.9E-05 4.1E-10 95.9 9.8 81 150-246 58-138 (691)
177 PTZ00258 GTP-binding protein; 98.0 3.2E-05 7E-10 87.5 11.0 47 54-100 16-62 (390)
178 PTZ00133 ADP-ribosylation fact 98.0 7.5E-05 1.6E-09 75.5 12.2 66 166-245 61-130 (182)
179 TIGR02034 CysN sulfate adenyly 98.0 2.9E-05 6.3E-10 88.6 10.2 80 150-246 65-146 (406)
180 PRK10512 selenocysteinyl-tRNA- 98.0 4.6E-05 9.9E-10 91.3 12.2 65 166-246 51-117 (614)
181 COG1100 GTPase SAR1 and relate 98.0 6.6E-05 1.4E-09 77.1 11.9 115 61-246 7-124 (219)
182 cd04121 Rab40 Rab40 subfamily. 98.0 0.00015 3.2E-09 74.2 14.3 66 166-246 55-123 (189)
183 cd00877 Ran Ran (Ras-related n 97.9 3.9E-05 8.4E-10 76.1 9.6 66 166-246 49-117 (166)
184 PRK12317 elongation factor 1-a 97.9 3.8E-05 8.3E-10 88.0 10.7 80 150-246 69-152 (425)
185 cd01870 RhoA_like RhoA-like su 97.9 5.4E-05 1.2E-09 74.8 10.4 26 60-85 2-27 (175)
186 PLN00223 ADP-ribosylation fact 97.9 9.4E-05 2E-09 74.8 12.3 67 166-246 61-131 (181)
187 cd04148 RGK RGK subfamily. Th 97.9 5.7E-05 1.2E-09 79.0 11.0 25 61-85 2-26 (221)
188 TIGR01394 TypA_BipA GTP-bindin 97.9 4.6E-05 1E-09 90.8 11.5 71 158-246 57-129 (594)
189 PRK09601 GTP-binding protein Y 97.9 4.4E-05 9.4E-10 85.6 10.5 39 60-98 3-41 (364)
190 cd04143 Rhes_like Rhes_like su 97.9 0.00012 2.5E-09 78.3 13.3 25 61-85 2-26 (247)
191 PRK05433 GTP-binding protein L 97.9 5.7E-05 1.2E-09 90.3 12.1 65 166-245 74-138 (600)
192 PLN03071 GTP-binding nuclear p 97.9 7.5E-05 1.6E-09 78.0 11.4 66 166-246 62-130 (219)
193 smart00177 ARF ARF-like small 97.9 8.5E-05 1.8E-09 74.4 11.3 67 166-246 57-127 (175)
194 PRK00007 elongation factor G; 97.9 4.1E-05 8.9E-10 93.0 10.5 81 150-246 60-140 (693)
195 TIGR00437 feoB ferrous iron tr 97.9 4.7E-05 1E-09 90.8 10.8 70 167-246 42-112 (591)
196 PRK05124 cysN sulfate adenylyl 97.9 5.5E-05 1.2E-09 88.0 11.1 66 165-246 106-173 (474)
197 PRK00049 elongation factor Tu; 97.9 5.5E-05 1.2E-09 86.1 10.5 65 165-246 74-141 (396)
198 PRK05506 bifunctional sulfate 97.9 8.2E-05 1.8E-09 89.5 12.4 66 165-246 103-170 (632)
199 PRK12736 elongation factor Tu; 97.9 5.9E-05 1.3E-09 85.8 10.5 65 165-246 74-141 (394)
200 cd04126 Rab20 Rab20 subfamily. 97.8 0.00012 2.6E-09 76.8 11.7 25 61-85 2-26 (220)
201 cd01892 Miro2 Miro2 subfamily. 97.8 0.00013 2.7E-09 72.7 11.2 26 60-85 5-30 (169)
202 PF00071 Ras: Ras family; Int 97.8 0.00018 3.8E-09 70.1 11.9 85 166-264 48-135 (162)
203 cd04134 Rho3 Rho3 subfamily. 97.8 6.6E-05 1.4E-09 76.1 9.1 67 166-246 48-117 (189)
204 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.8 0.00015 3.2E-09 76.3 11.5 66 166-246 49-118 (222)
205 PRK00741 prfC peptide chain re 97.8 0.00015 3.3E-09 85.3 12.7 74 157-246 71-144 (526)
206 cd01874 Cdc42 Cdc42 subfamily. 97.8 0.00014 3.1E-09 72.9 10.5 66 166-246 49-118 (175)
207 PRK10218 GTP-binding protein; 97.8 0.00012 2.5E-09 87.6 11.5 64 166-246 68-133 (607)
208 PF08477 Miro: Miro-like prote 97.8 8.9E-05 1.9E-09 68.7 8.2 25 61-85 1-25 (119)
209 TIGR00485 EF-Tu translation el 97.8 0.00012 2.7E-09 83.1 10.7 80 150-247 60-142 (394)
210 PRK12735 elongation factor Tu; 97.8 0.00014 3.1E-09 82.7 11.2 65 165-246 74-141 (396)
211 KOG1954 Endocytosis/signaling 97.7 6E-05 1.3E-09 82.9 7.4 169 56-249 55-227 (532)
212 cd04135 Tc10 TC10 subfamily. 97.7 0.00012 2.7E-09 72.1 9.1 25 61-85 2-26 (174)
213 cd01858 NGP_1 NGP-1. Autoanti 97.7 9E-05 1.9E-09 73.0 7.9 25 61-85 104-128 (157)
214 cd04128 Spg1 Spg1p. Spg1p (se 97.7 0.00028 6.1E-09 71.4 11.1 66 166-246 49-117 (182)
215 cd04130 Wrch_1 Wrch-1 subfamil 97.7 0.00017 3.7E-09 71.6 9.2 66 166-246 48-117 (173)
216 TIGR00483 EF-1_alpha translati 97.7 0.00013 2.8E-09 83.8 9.3 80 150-246 70-154 (426)
217 cd01871 Rac1_like Rac1-like su 97.7 0.00032 7E-09 70.3 10.9 66 166-246 49-118 (174)
218 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.6 0.00046 9.9E-09 73.2 12.3 115 58-246 12-130 (232)
219 cd01857 HSR1_MMR1 HSR1/MMR1. 97.6 9.5E-05 2.1E-09 71.7 6.5 25 61-85 85-109 (141)
220 cd01855 YqeH YqeH. YqeH is an 97.6 0.00013 2.8E-09 74.1 7.6 25 60-84 128-152 (190)
221 cd04131 Rnd Rnd subfamily. Th 97.6 0.0003 6.5E-09 71.1 10.2 112 61-246 3-118 (178)
222 cd01849 YlqF_related_GTPase Yl 97.6 9.8E-05 2.1E-09 72.7 6.4 27 57-83 98-124 (155)
223 TIGR00503 prfC peptide chain r 97.6 0.00022 4.7E-09 84.1 10.3 72 157-246 72-145 (527)
224 cd04178 Nucleostemin_like Nucl 97.6 0.0002 4.2E-09 72.5 8.3 26 59-84 117-142 (172)
225 TIGR01425 SRP54_euk signal rec 97.6 0.00074 1.6E-08 77.4 13.8 73 166-250 183-256 (429)
226 PRK09602 translation-associate 97.6 0.00035 7.7E-09 79.6 11.2 39 60-98 2-40 (396)
227 TIGR00490 aEF-2 translation el 97.6 0.00029 6.3E-09 86.1 11.1 68 165-247 85-152 (720)
228 PRK07560 elongation factor EF- 97.6 0.00024 5.3E-09 86.9 10.4 65 165-246 86-152 (731)
229 TIGR03680 eif2g_arch translati 97.6 0.00038 8.2E-09 79.5 11.3 65 166-246 80-147 (406)
230 PRK13351 elongation factor G; 97.6 0.00029 6.3E-09 85.7 10.8 67 165-246 72-138 (687)
231 cd01899 Ygr210 Ygr210 subfamil 97.5 0.00025 5.4E-09 78.5 8.8 37 62-98 1-37 (318)
232 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.5 0.00074 1.6E-08 68.6 11.4 66 166-246 53-122 (182)
233 smart00176 RAN Ran (Ras-relate 97.5 0.0006 1.3E-08 70.5 10.8 66 166-246 44-112 (200)
234 cd04133 Rop_like Rop subfamily 97.5 0.00046 9.9E-09 69.8 9.4 66 166-246 49-118 (176)
235 cd04129 Rho2 Rho2 subfamily. 97.5 0.00059 1.3E-08 69.0 9.9 25 61-85 3-27 (187)
236 PTZ00141 elongation factor 1- 97.5 0.00028 6E-09 81.6 8.3 64 165-245 84-157 (446)
237 PTZ00416 elongation factor 2; 97.5 0.00033 7.2E-09 86.9 9.4 65 167-246 93-157 (836)
238 cd04102 RabL3 RabL3 (Rab-like3 97.4 0.0015 3.2E-08 67.9 12.4 25 61-85 2-26 (202)
239 cd01875 RhoG RhoG subfamily. 97.4 0.00095 2.1E-08 67.9 10.7 112 61-246 5-120 (191)
240 cd01882 BMS1 Bms1. Bms1 is an 97.4 0.00078 1.7E-08 70.9 10.2 63 165-246 82-146 (225)
241 PLN00116 translation elongatio 97.4 0.0011 2.4E-08 82.4 13.0 66 166-246 98-163 (843)
242 PF00735 Septin: Septin; Inte 97.4 0.00035 7.6E-09 76.1 7.5 80 166-247 63-156 (281)
243 KOG1489 Predicted GTP-binding 97.4 0.00058 1.3E-08 74.4 8.9 26 58-83 195-220 (366)
244 PLN00043 elongation factor 1-a 97.4 0.00049 1.1E-08 79.7 8.9 65 165-246 84-158 (447)
245 TIGR03596 GTPase_YlqF ribosome 97.3 0.00032 7E-09 76.0 6.4 27 59-85 118-144 (276)
246 TIGR02836 spore_IV_A stage IV 97.3 0.0029 6.3E-08 71.8 13.9 77 166-245 91-192 (492)
247 cd01856 YlqF YlqF. Proteins o 97.3 0.0009 2E-08 67.0 8.9 28 58-85 114-141 (171)
248 PLN00023 GTP-binding protein; 97.3 0.0056 1.2E-07 68.0 15.8 30 56-85 18-47 (334)
249 KOG1532 GTPase XAB1, interacts 97.3 0.00075 1.6E-08 72.2 8.6 165 56-255 16-203 (366)
250 cd01851 GBP Guanylate-binding 97.3 0.00079 1.7E-08 70.9 8.3 29 58-86 6-36 (224)
251 COG0536 Obg Predicted GTPase [ 97.3 0.0019 4.1E-08 71.2 11.3 78 164-248 205-290 (369)
252 PRK04000 translation initiatio 97.2 0.0019 4.1E-08 74.1 11.6 22 61-82 11-32 (411)
253 PF00025 Arf: ADP-ribosylation 97.2 0.0033 7.2E-08 63.2 11.5 93 166-276 58-154 (175)
254 COG1163 DRG Predicted GTPase [ 97.2 0.00085 1.8E-08 73.4 7.6 24 61-84 65-88 (365)
255 PRK12740 elongation factor G; 97.2 0.0011 2.4E-08 80.4 9.4 67 165-246 59-125 (668)
256 PRK09563 rbgA GTPase YlqF; Rev 97.2 0.00059 1.3E-08 74.4 6.2 27 59-85 121-147 (287)
257 PRK13768 GTPase; Provisional 97.1 0.00056 1.2E-08 73.3 4.8 75 166-247 97-176 (253)
258 PRK09435 membrane ATPase/prote 97.1 0.0045 9.7E-08 69.1 11.8 24 59-82 56-79 (332)
259 TIGR00064 ftsY signal recognit 97.1 0.0036 7.7E-08 68.0 10.9 77 166-250 155-234 (272)
260 TIGR03597 GTPase_YqeH ribosome 97.0 0.00079 1.7E-08 75.8 5.9 24 60-83 155-178 (360)
261 COG2229 Predicted GTPase [Gene 97.0 0.0086 1.9E-07 60.9 12.4 134 57-262 8-148 (187)
262 PRK10416 signal recognition pa 97.0 0.0063 1.4E-07 67.6 12.6 76 166-249 197-275 (318)
263 PRK14974 cell division protein 97.0 0.004 8.6E-08 69.6 10.6 74 166-250 223-296 (336)
264 PRK00771 signal recognition pa 97.0 0.0061 1.3E-07 70.4 12.3 73 167-250 177-249 (437)
265 COG1161 Predicted GTPases [Gen 96.9 0.0012 2.6E-08 73.3 6.2 40 41-84 118-157 (322)
266 PTZ00132 GTP-binding nuclear p 96.9 0.008 1.7E-07 62.1 11.9 30 56-85 6-35 (215)
267 PTZ00327 eukaryotic translatio 96.9 0.0051 1.1E-07 71.5 11.1 65 166-246 117-184 (460)
268 PRK13796 GTPase YqeH; Provisio 96.9 0.0012 2.6E-08 74.5 5.8 23 61-83 162-184 (365)
269 KOG1490 GTP-binding protein CR 96.9 0.0014 2.9E-08 75.1 6.1 79 165-250 214-298 (620)
270 PRK11889 flhF flagellar biosyn 96.9 0.0089 1.9E-07 67.9 12.2 72 166-250 321-394 (436)
271 PRK06731 flhF flagellar biosyn 96.9 0.0039 8.4E-08 67.7 9.1 73 166-250 155-228 (270)
272 KOG0091 GTPase Rab39, small G 96.8 0.017 3.6E-07 57.8 12.2 134 61-265 10-148 (213)
273 PF09439 SRPRB: Signal recogni 96.8 0.0052 1.1E-07 62.9 9.1 27 59-85 3-29 (181)
274 COG4917 EutP Ethanolamine util 96.8 0.0036 7.8E-08 60.0 6.9 27 61-87 3-29 (148)
275 COG5256 TEF1 Translation elong 96.8 0.011 2.3E-07 66.9 11.5 67 164-246 83-158 (428)
276 KOG2655 Septin family protein 96.7 0.0064 1.4E-07 68.0 9.7 81 166-248 79-173 (366)
277 PRK12726 flagellar biosynthesi 96.7 0.0075 1.6E-07 68.3 10.0 70 166-248 286-357 (407)
278 PRK12724 flagellar biosynthesi 96.7 0.0071 1.5E-07 69.2 10.0 76 166-250 300-376 (432)
279 COG5019 CDC3 Septin family pro 96.7 0.0072 1.6E-07 67.4 9.5 81 166-248 82-177 (373)
280 KOG0078 GTP-binding protein SE 96.7 0.02 4.3E-07 59.4 11.9 67 167-247 62-131 (207)
281 cd03112 CobW_like The function 96.7 0.012 2.5E-07 58.6 10.0 24 60-83 1-24 (158)
282 PRK14723 flhF flagellar biosyn 96.6 0.025 5.4E-07 69.2 14.6 23 61-83 187-209 (767)
283 KOG0084 GTPase Rab1/YPT1, smal 96.6 0.013 2.9E-07 60.2 10.3 134 59-264 9-145 (205)
284 KOG0094 GTPase Rab6/YPT6/Ryh1, 96.6 0.018 3.8E-07 59.2 11.0 69 166-248 71-143 (221)
285 cd01873 RhoBTB RhoBTB subfamil 96.6 0.011 2.5E-07 60.7 10.0 64 166-246 66-133 (195)
286 PRK12289 GTPase RsgA; Reviewed 96.6 0.004 8.8E-08 70.0 6.9 24 61-84 174-197 (352)
287 TIGR00750 lao LAO/AO transport 96.6 0.015 3.2E-07 63.9 11.1 25 58-82 33-57 (300)
288 KOG1547 Septin CDC10 and relat 96.6 0.025 5.4E-07 59.8 12.0 49 30-85 23-72 (336)
289 PRK12288 GTPase RsgA; Reviewed 96.6 0.0046 9.9E-08 69.4 7.1 25 61-85 207-231 (347)
290 cd04103 Centaurin_gamma Centau 96.6 0.013 2.8E-07 57.9 9.6 25 61-85 2-26 (158)
291 TIGR00157 ribosome small subun 96.5 0.0048 1E-07 65.9 6.9 26 60-85 121-146 (245)
292 PRK12727 flagellar biosynthesi 96.5 0.015 3.3E-07 68.2 11.3 23 60-82 351-373 (559)
293 KOG1707 Predicted Ras related/ 96.5 0.012 2.5E-07 68.8 9.8 114 61-248 11-130 (625)
294 PRK10867 signal recognition pa 96.4 0.013 2.9E-07 67.5 9.7 74 166-250 184-257 (433)
295 TIGR00092 GTP-binding protein 96.4 0.012 2.6E-07 66.5 8.9 36 61-96 4-40 (368)
296 cd01859 MJ1464 MJ1464. This f 96.3 0.015 3.2E-07 57.0 8.5 26 58-83 100-125 (156)
297 cd03114 ArgK-like The function 96.3 0.026 5.6E-07 55.7 9.7 21 62-82 2-22 (148)
298 cd03115 SRP The signal recogni 96.2 0.079 1.7E-06 52.9 13.2 72 166-248 83-154 (173)
299 cd01854 YjeQ_engC YjeQ/EngC. 96.2 0.012 2.6E-07 64.3 7.6 26 60-85 162-187 (287)
300 PRK14722 flhF flagellar biosyn 96.1 0.032 6.8E-07 63.3 10.7 23 61-83 139-161 (374)
301 PRK12723 flagellar biosynthesi 96.1 0.085 1.9E-06 60.2 14.1 74 166-249 255-328 (388)
302 PF00448 SRP54: SRP54-type pro 96.1 0.026 5.7E-07 58.4 9.2 22 61-82 3-24 (196)
303 PF03029 ATP_bind_1: Conserved 96.0 0.034 7.4E-07 59.3 9.9 36 64-105 1-36 (238)
304 PRK00098 GTPase RsgA; Reviewed 96.0 0.017 3.8E-07 63.4 7.8 25 61-85 166-190 (298)
305 COG0532 InfB Translation initi 96.0 0.058 1.2E-06 62.9 12.2 114 57-246 3-120 (509)
306 TIGR00959 ffh signal recogniti 96.0 0.042 9.2E-07 63.4 11.1 74 166-250 183-256 (428)
307 KOG0468 U5 snRNP-specific prot 95.9 0.19 4E-06 59.8 15.6 140 57-251 126-267 (971)
308 PRK05703 flhF flagellar biosyn 95.9 0.059 1.3E-06 62.2 11.6 73 166-248 300-372 (424)
309 TIGR03348 VI_IcmF type VI secr 95.8 0.059 1.3E-06 69.6 12.6 51 35-86 86-137 (1169)
310 PRK14721 flhF flagellar biosyn 95.8 0.076 1.7E-06 61.1 12.1 73 166-249 270-342 (420)
311 COG0480 FusA Translation elong 95.6 0.033 7.1E-07 67.8 8.6 137 59-251 10-146 (697)
312 COG1703 ArgK Putative periplas 95.6 0.13 2.8E-06 56.3 12.1 25 58-82 50-74 (323)
313 KOG0092 GTPase Rab5/YPT51 and 95.5 0.077 1.7E-06 54.5 9.4 25 61-85 7-31 (200)
314 PRK14845 translation initiatio 95.4 0.046 9.9E-07 69.2 9.2 65 165-246 525-591 (1049)
315 COG0012 Predicted GTPase, prob 95.4 0.044 9.5E-07 61.5 8.0 25 60-84 3-27 (372)
316 KOG1486 GTP-binding protein DR 95.3 0.025 5.3E-07 60.2 5.2 24 60-83 63-86 (364)
317 COG1136 SalX ABC-type antimicr 95.2 0.096 2.1E-06 55.5 9.5 49 194-243 152-202 (226)
318 KOG2485 Conserved ATP/GTP bind 95.2 0.05 1.1E-06 59.6 7.3 44 38-84 125-168 (335)
319 KOG0458 Elongation factor 1 al 95.1 0.021 4.6E-07 66.8 4.5 81 149-246 239-328 (603)
320 KOG0093 GTPase Rab3, small G p 95.0 0.24 5.2E-06 49.0 10.6 67 166-245 70-138 (193)
321 KOG1145 Mitochondrial translat 95.0 0.26 5.7E-06 57.6 12.6 70 159-245 194-265 (683)
322 KOG0395 Ras-related GTPase [Ge 94.9 0.075 1.6E-06 55.0 7.5 68 165-246 50-121 (196)
323 PF03193 DUF258: Protein of un 94.8 0.038 8.2E-07 55.6 4.7 24 60-83 36-59 (161)
324 KOG0090 Signal recognition par 94.5 0.18 3.8E-06 52.9 8.8 68 167-248 83-160 (238)
325 COG3840 ThiQ ABC-type thiamine 94.3 0.035 7.6E-07 56.9 3.2 28 61-88 27-54 (231)
326 KOG0098 GTPase Rab2, small G p 94.2 0.83 1.8E-05 47.1 12.8 136 59-265 6-143 (216)
327 COG0541 Ffh Signal recognition 94.2 0.96 2.1E-05 52.0 14.6 74 165-250 182-256 (451)
328 KOG1424 Predicted GTP-binding 93.9 0.072 1.6E-06 61.8 5.0 26 59-84 314-339 (562)
329 PF04670 Gtr1_RagA: Gtr1/RagA 93.8 0.34 7.3E-06 51.6 9.7 72 166-247 48-125 (232)
330 COG5192 BMS1 GTP-binding prote 93.8 0.38 8.3E-06 56.2 10.5 28 55-82 64-92 (1077)
331 KOG2203 GTP-binding protein [G 93.8 0.028 6E-07 65.2 1.5 30 56-85 34-63 (772)
332 PRK06995 flhF flagellar biosyn 93.7 0.14 3E-06 60.0 7.2 72 166-248 335-406 (484)
333 cd03280 ABC_MutS2 MutS2 homolo 93.5 0.54 1.2E-05 48.3 10.4 29 57-85 24-62 (200)
334 KOG0780 Signal recognition par 93.4 0.14 3.1E-06 57.6 6.2 73 165-250 183-257 (483)
335 PF13555 AAA_29: P-loop contai 93.1 0.082 1.8E-06 44.9 3.0 22 61-82 25-46 (62)
336 KOG1491 Predicted GTP-binding 93.1 0.12 2.6E-06 57.3 5.0 32 54-85 15-46 (391)
337 KOG0095 GTPase Rab30, small G 93.1 0.6 1.3E-05 46.2 9.2 117 59-246 7-125 (213)
338 COG1419 FlhF Flagellar GTP-bin 93.1 0.82 1.8E-05 52.3 11.7 69 166-246 282-351 (407)
339 COG1341 Predicted GTPase or GT 93.0 0.76 1.6E-05 52.3 11.3 25 58-82 72-96 (398)
340 COG1120 FepC ABC-type cobalami 92.7 0.58 1.3E-05 50.6 9.5 43 199-242 153-197 (258)
341 PF00005 ABC_tran: ABC transpo 92.7 0.079 1.7E-06 50.4 2.6 25 61-85 13-37 (137)
342 KOG0079 GTP-binding protein H- 92.7 1.2 2.5E-05 44.4 10.6 84 166-264 57-143 (198)
343 cd00071 GMPK Guanosine monopho 92.6 0.1 2.2E-06 50.8 3.3 21 62-82 2-22 (137)
344 COG3276 SelB Selenocysteine-sp 92.6 0.5 1.1E-05 54.2 9.2 66 167-248 51-118 (447)
345 TIGR03263 guanyl_kin guanylate 92.5 0.11 2.4E-06 52.0 3.5 22 61-82 3-24 (180)
346 COG1217 TypA Predicted membran 92.5 0.32 7E-06 56.0 7.4 75 166-259 68-144 (603)
347 PRK13695 putative NTPase; Prov 92.4 0.84 1.8E-05 45.7 9.8 22 61-82 2-23 (174)
348 cd03243 ABC_MutS_homologs The 92.4 1.3 2.9E-05 45.5 11.4 25 61-85 31-55 (202)
349 KOG0080 GTPase Rab18, small G 92.2 0.71 1.5E-05 46.4 8.6 134 58-264 10-148 (209)
350 KOG0410 Predicted GTP binding 92.2 0.21 4.5E-06 55.2 5.3 34 55-88 174-207 (410)
351 COG4988 CydD ABC-type transpor 92.2 2.2 4.7E-05 50.7 13.9 25 61-85 349-373 (559)
352 KOG0075 GTP-binding ADP-ribosy 91.8 0.34 7.4E-06 48.0 5.8 67 166-245 65-134 (186)
353 PF03205 MobB: Molybdopterin g 91.7 0.13 2.9E-06 50.4 2.9 23 60-82 1-23 (140)
354 KOG3883 Ras family small GTPas 91.5 1.8 4E-05 43.3 10.5 69 166-248 60-133 (198)
355 COG1116 TauB ABC-type nitrate/ 91.4 0.15 3.4E-06 54.4 3.3 28 61-88 31-58 (248)
356 PF13521 AAA_28: AAA domain; P 91.1 0.14 3E-06 50.7 2.4 23 61-83 1-23 (163)
357 KOG1487 GTP-binding protein DR 91.1 0.28 6.2E-06 52.7 4.7 30 56-85 51-85 (358)
358 PRK00300 gmk guanylate kinase; 90.9 0.18 3.9E-06 51.6 3.1 35 61-96 7-43 (205)
359 PTZ00099 rab6; Provisional 90.8 0.69 1.5E-05 46.8 7.2 68 165-246 28-98 (176)
360 KOG2484 GTPase [General functi 90.6 0.26 5.6E-06 55.8 4.2 28 61-88 254-281 (435)
361 TIGR01166 cbiO cobalt transpor 90.5 0.22 4.8E-06 50.5 3.3 25 61-85 20-44 (190)
362 COG3910 Predicted ATPase [Gene 90.5 0.23 4.9E-06 51.3 3.2 46 38-88 21-67 (233)
363 COG1124 DppF ABC-type dipeptid 90.5 2 4.4E-05 46.0 10.4 27 61-87 35-61 (252)
364 cd03216 ABC_Carb_Monos_I This 90.4 0.23 5E-06 49.4 3.3 25 61-85 28-52 (163)
365 PRK13541 cytochrome c biogenes 90.4 0.23 4.9E-06 50.8 3.3 25 61-85 28-52 (195)
366 cd03221 ABCF_EF-3 ABCF_EF-3 E 90.4 0.23 5E-06 48.5 3.2 24 62-85 29-52 (144)
367 cd03273 ABC_SMC2_euk Eukaryoti 90.4 0.21 4.6E-06 53.2 3.1 27 56-82 22-48 (251)
368 cd03224 ABC_TM1139_LivF_branch 90.3 0.23 4.9E-06 51.5 3.3 25 61-85 28-52 (222)
369 TIGR02673 FtsE cell division A 90.3 0.23 5E-06 51.2 3.3 25 61-85 30-54 (214)
370 TIGR01360 aden_kin_iso1 adenyl 90.3 0.25 5.4E-06 49.5 3.4 28 58-85 2-32 (188)
371 PRK13540 cytochrome c biogenes 90.1 0.24 5.3E-06 50.7 3.3 25 61-85 29-53 (200)
372 cd03269 ABC_putative_ATPase Th 90.0 0.25 5.4E-06 50.9 3.3 29 57-85 23-52 (210)
373 cd03263 ABC_subfamily_A The AB 90.0 0.25 5.5E-06 51.2 3.3 25 61-85 30-54 (220)
374 COG1101 PhnK ABC-type uncharac 90.0 0.24 5.1E-06 52.2 3.0 25 62-86 35-59 (263)
375 TIGR00960 3a0501s02 Type II (G 89.9 0.25 5.5E-06 51.1 3.3 25 61-85 31-55 (216)
376 PRK15177 Vi polysaccharide exp 89.9 0.26 5.6E-06 51.3 3.3 25 61-85 15-39 (213)
377 cd03222 ABC_RNaseL_inhibitor T 89.9 0.26 5.6E-06 50.3 3.2 25 61-85 27-51 (177)
378 cd03266 ABC_NatA_sodium_export 89.9 0.26 5.7E-06 50.9 3.3 25 61-85 33-57 (218)
379 cd03293 ABC_NrtD_SsuB_transpor 89.9 0.26 5.7E-06 51.2 3.3 25 61-85 32-56 (220)
380 PF05879 RHD3: Root hair defec 89.8 0.18 3.8E-06 62.3 2.2 67 491-567 492-560 (742)
381 TIGR03608 L_ocin_972_ABC putat 89.7 0.27 5.9E-06 50.3 3.3 25 61-85 26-50 (206)
382 cd03226 ABC_cobalt_CbiO_domain 89.7 0.27 5.9E-06 50.5 3.3 25 61-85 28-52 (205)
383 cd03225 ABC_cobalt_CbiO_domain 89.7 0.28 6E-06 50.5 3.3 25 61-85 29-53 (211)
384 PRK14738 gmk guanylate kinase; 89.7 0.4 8.6E-06 49.8 4.4 22 61-82 15-36 (206)
385 cd03261 ABC_Org_Solvent_Resist 89.6 0.28 6E-06 51.5 3.3 25 61-85 28-52 (235)
386 TIGR02315 ABC_phnC phosphonate 89.6 0.28 6E-06 51.7 3.3 25 61-85 30-54 (243)
387 cd03255 ABC_MJ0796_Lo1CDE_FtsE 89.6 0.28 6.1E-06 50.8 3.2 25 61-85 32-56 (218)
388 cd03217 ABC_FeS_Assembly ABC-t 89.6 0.28 6.1E-06 50.4 3.2 23 61-83 28-50 (200)
389 PRK11124 artP arginine transpo 89.5 0.28 6.1E-06 51.7 3.3 25 61-85 30-54 (242)
390 PRK11629 lolD lipoprotein tran 89.5 0.29 6.2E-06 51.4 3.3 25 61-85 37-61 (233)
391 TIGR01189 ccmA heme ABC export 89.4 0.3 6.6E-06 49.9 3.3 25 61-85 28-52 (198)
392 cd03290 ABCC_SUR1_N The SUR do 89.4 0.3 6.5E-06 50.7 3.3 25 61-85 29-53 (218)
393 cd03218 ABC_YhbG The ABC trans 89.4 0.3 6.5E-06 51.0 3.3 25 61-85 28-52 (232)
394 cd03292 ABC_FtsE_transporter F 89.4 0.3 6.5E-06 50.3 3.3 25 61-85 29-53 (214)
395 cd03256 ABC_PhnC_transporter A 89.4 0.3 6.4E-06 51.3 3.3 25 61-85 29-53 (241)
396 cd03215 ABC_Carb_Monos_II This 89.4 0.31 6.7E-06 49.3 3.3 25 61-85 28-52 (182)
397 TIGR01978 sufC FeS assembly AT 89.3 0.3 6.5E-06 51.3 3.3 23 61-83 28-50 (243)
398 KOG2423 Nucleolar GTPase [Gene 89.3 0.93 2E-05 51.4 7.0 48 33-84 285-332 (572)
399 cd03259 ABC_Carb_Solutes_like 89.2 0.31 6.7E-06 50.3 3.3 25 61-85 28-52 (213)
400 TIGR02211 LolD_lipo_ex lipopro 89.2 0.31 6.8E-06 50.5 3.3 25 61-85 33-57 (221)
401 COG4525 TauB ABC-type taurine 89.2 0.29 6.3E-06 50.9 2.9 28 61-88 33-60 (259)
402 cd03369 ABCC_NFT1 Domain 2 of 89.1 0.32 6.8E-06 50.1 3.2 25 61-85 36-60 (207)
403 cd03230 ABC_DR_subfamily_A Thi 89.1 0.33 7.2E-06 48.6 3.3 25 61-85 28-52 (173)
404 cd03265 ABC_DrrA DrrA is the A 89.1 0.33 7.1E-06 50.5 3.3 25 61-85 28-52 (220)
405 cd03257 ABC_NikE_OppD_transpor 89.0 0.33 7.2E-06 50.4 3.3 25 61-85 33-57 (228)
406 COG4559 ABC-type hemin transpo 89.0 0.32 7E-06 51.2 3.1 31 61-93 29-59 (259)
407 PF13191 AAA_16: AAA ATPase do 89.0 0.44 9.6E-06 47.2 4.0 28 55-82 20-47 (185)
408 cd03287 ABC_MSH3_euk MutS3 hom 89.0 0.63 1.4E-05 49.2 5.4 29 60-88 32-60 (222)
409 cd01130 VirB11-like_ATPase Typ 89.0 0.28 6.1E-06 49.9 2.7 23 61-83 27-49 (186)
410 cd03264 ABC_drug_resistance_li 88.9 0.34 7.4E-06 49.9 3.3 25 61-85 27-51 (211)
411 cd03262 ABC_HisP_GlnQ_permease 88.9 0.35 7.5E-06 49.8 3.3 25 61-85 28-52 (213)
412 cd03254 ABCC_Glucan_exporter_l 88.9 0.34 7.4E-06 50.5 3.3 25 61-85 31-55 (229)
413 cd03235 ABC_Metallic_Cations A 88.8 0.34 7.5E-06 50.0 3.3 25 61-85 27-51 (213)
414 PRK10247 putative ABC transpor 88.8 0.35 7.5E-06 50.6 3.3 25 61-85 35-59 (225)
415 cd03253 ABCC_ATM1_transporter 88.8 0.34 7.5E-06 50.7 3.3 25 61-85 29-53 (236)
416 COG0050 TufB GTPases - transla 88.7 1.9 4E-05 47.5 8.7 132 56-247 9-142 (394)
417 cd03260 ABC_PstB_phosphate_tra 88.7 0.32 7E-06 50.7 3.0 23 61-83 28-50 (227)
418 COG1162 Predicted GTPases [Gen 88.7 0.27 5.8E-06 54.1 2.4 21 61-81 166-186 (301)
419 cd03246 ABCC_Protease_Secretio 88.6 0.36 7.9E-06 48.4 3.2 25 61-85 30-54 (173)
420 TIGR03864 PQQ_ABC_ATP ABC tran 88.6 0.36 7.8E-06 50.7 3.3 25 61-85 29-53 (236)
421 cd03268 ABC_BcrA_bacitracin_re 88.6 0.37 8E-06 49.5 3.3 25 61-85 28-52 (208)
422 COG3839 MalK ABC-type sugar tr 88.6 0.35 7.5E-06 54.3 3.2 25 61-85 31-55 (338)
423 cd03240 ABC_Rad50 The catalyti 88.6 0.42 9.1E-06 49.6 3.7 29 57-85 20-52 (204)
424 PRK13539 cytochrome c biogenes 88.5 0.38 8.2E-06 49.7 3.3 25 61-85 30-54 (207)
425 PRK10078 ribose 1,5-bisphospho 88.5 0.35 7.6E-06 49.1 3.0 23 61-83 4-26 (186)
426 cd03232 ABC_PDR_domain2 The pl 88.5 0.38 8.2E-06 49.1 3.2 23 61-83 35-57 (192)
427 PF13304 AAA_21: AAA domain; P 88.4 0.14 3E-06 51.7 0.0 20 63-82 3-22 (303)
428 PRK10584 putative ABC transpor 88.4 0.38 8.2E-06 50.2 3.3 25 61-85 38-62 (228)
429 cd03236 ABC_RNaseL_inhibitor_d 88.4 0.38 8.2E-06 51.8 3.3 25 61-85 28-52 (255)
430 cd03229 ABC_Class3 This class 88.4 0.4 8.7E-06 48.3 3.3 25 61-85 28-52 (178)
431 cd03247 ABCC_cytochrome_bd The 88.4 0.4 8.7E-06 48.2 3.3 25 61-85 30-54 (178)
432 cd03297 ABC_ModC_molybdenum_tr 88.4 0.39 8.5E-06 49.6 3.3 26 60-85 24-49 (214)
433 PRK13538 cytochrome c biogenes 88.3 0.4 8.6E-06 49.3 3.3 25 61-85 29-53 (204)
434 cd03231 ABC_CcmA_heme_exporter 88.3 0.4 8.7E-06 49.2 3.3 25 61-85 28-52 (201)
435 cd03219 ABC_Mj1267_LivG_branch 88.3 0.38 8.3E-06 50.4 3.2 25 61-85 28-52 (236)
436 PRK13649 cbiO cobalt transport 88.3 0.37 8.1E-06 52.1 3.2 25 61-85 35-59 (280)
437 TIGR03740 galliderm_ABC gallid 88.3 0.39 8.5E-06 50.0 3.3 25 61-85 28-52 (223)
438 cd03233 ABC_PDR_domain1 The pl 88.3 0.34 7.3E-06 50.0 2.7 24 61-84 35-58 (202)
439 TIGR03410 urea_trans_UrtE urea 88.3 0.4 8.6E-06 50.1 3.3 25 61-85 28-52 (230)
440 PF13671 AAA_33: AAA domain; P 88.2 0.35 7.5E-06 46.2 2.6 20 62-81 2-21 (143)
441 cd00267 ABC_ATPase ABC (ATP-bi 88.2 0.42 9.2E-06 46.9 3.3 26 60-85 26-51 (157)
442 cd03244 ABCC_MRP_domain2 Domai 88.2 0.4 8.7E-06 49.7 3.3 25 61-85 32-56 (221)
443 cd03258 ABC_MetN_methionine_tr 88.2 0.41 8.9E-06 50.1 3.3 25 61-85 33-57 (233)
444 KOG0073 GTP-binding ADP-ribosy 88.1 4 8.6E-05 41.4 9.9 66 166-245 60-129 (185)
445 KOG1144 Translation initiation 88.1 2.7 6E-05 51.0 10.2 133 55-246 471-605 (1064)
446 cd03301 ABC_MalK_N The N-termi 88.1 0.42 9E-06 49.3 3.3 25 61-85 28-52 (213)
447 cd03223 ABCD_peroxisomal_ALDP 88.1 0.44 9.4E-06 47.6 3.3 25 61-85 29-53 (166)
448 cd03250 ABCC_MRP_domain1 Domai 88.0 0.42 9.2E-06 49.0 3.3 25 61-85 33-57 (204)
449 TIGR01184 ntrCD nitrate transp 88.0 0.42 9.2E-06 50.2 3.3 25 61-85 13-37 (230)
450 TIGR02324 CP_lyasePhnL phospho 88.0 0.43 9.3E-06 49.6 3.3 25 61-85 36-60 (224)
451 cd03228 ABCC_MRP_Like The MRP 87.9 0.45 9.7E-06 47.6 3.3 25 61-85 30-54 (171)
452 PRK10908 cell division protein 87.9 0.43 9.3E-06 49.6 3.3 25 61-85 30-54 (222)
453 KOG1143 Predicted translation 87.9 2.5 5.5E-05 47.7 9.2 160 61-264 169-336 (591)
454 cd03249 ABC_MTABC3_MDL1_MDL2 M 87.8 0.42 9.1E-06 50.2 3.2 25 61-85 31-55 (238)
455 cd03296 ABC_CysA_sulfate_impor 87.8 0.43 9.3E-06 50.3 3.3 25 61-85 30-54 (239)
456 COG1132 MdlB ABC-type multidru 87.8 2.9 6.3E-05 49.9 10.6 25 61-85 357-381 (567)
457 cd03214 ABC_Iron-Siderophores_ 87.8 0.47 1E-05 47.9 3.3 25 61-85 27-51 (180)
458 cd03237 ABC_RNaseL_inhibitor_d 87.7 0.44 9.6E-06 50.9 3.3 25 61-85 27-51 (246)
459 CHL00131 ycf16 sulfate ABC tra 87.7 0.43 9.4E-06 50.5 3.2 23 61-83 35-57 (252)
460 PRK11248 tauB taurine transpor 87.7 0.45 9.7E-06 51.0 3.3 25 61-85 29-53 (255)
461 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 87.7 0.44 9.6E-06 49.9 3.2 25 61-85 50-74 (224)
462 PF13476 AAA_23: AAA domain; P 87.7 0.4 8.6E-06 48.0 2.8 25 57-81 17-41 (202)
463 TIGR02322 phosphon_PhnN phosph 87.7 0.37 8E-06 48.3 2.5 22 61-82 3-24 (179)
464 KOG0070 GTP-binding ADP-ribosy 87.6 1.6 3.6E-05 44.6 7.1 92 166-276 61-156 (181)
465 COG1126 GlnQ ABC-type polar am 87.6 0.48 1E-05 50.0 3.3 25 61-85 30-54 (240)
466 PRK09580 sufC cysteine desulfu 87.6 0.43 9.4E-06 50.4 3.1 23 61-83 29-51 (248)
467 cd03278 ABC_SMC_barmotin Barmo 87.5 0.4 8.7E-06 49.5 2.8 27 57-83 20-46 (197)
468 cd03251 ABCC_MsbA MsbA is an e 87.5 0.46 1E-05 49.7 3.3 25 61-85 30-54 (234)
469 PRK14262 phosphate ABC transpo 87.5 0.4 8.7E-06 50.8 2.8 23 61-83 31-53 (250)
470 cd03245 ABCC_bacteriocin_expor 87.5 0.47 1E-05 49.1 3.3 25 61-85 32-56 (220)
471 PRK15112 antimicrobial peptide 87.5 0.47 1E-05 51.1 3.3 25 61-85 41-65 (267)
472 PRK13645 cbiO cobalt transport 87.4 0.46 1E-05 51.7 3.3 25 61-85 39-63 (289)
473 PRK13638 cbiO cobalt transport 87.4 0.46 9.9E-06 51.2 3.2 25 61-85 29-53 (271)
474 cd03300 ABC_PotA_N PotA is an 87.4 0.48 1E-05 49.8 3.3 25 61-85 28-52 (232)
475 PRK10575 iron-hydroxamate tran 87.3 0.47 1E-05 51.0 3.3 25 61-85 39-63 (265)
476 PF13207 AAA_17: AAA domain; P 87.3 0.43 9.4E-06 44.3 2.6 25 61-85 1-26 (121)
477 PRK11701 phnK phosphonate C-P 87.3 0.49 1.1E-05 50.5 3.3 25 61-85 34-58 (258)
478 cd03282 ABC_MSH4_euk MutS4 hom 87.3 4.3 9.3E-05 42.3 10.2 26 60-85 30-55 (204)
479 cd03248 ABCC_TAP TAP, the Tran 87.2 0.49 1.1E-05 49.3 3.2 25 61-85 42-66 (226)
480 PRK10751 molybdopterin-guanine 87.2 0.43 9.4E-06 48.6 2.7 25 58-82 5-29 (173)
481 cd03298 ABC_ThiQ_thiamine_tran 87.2 0.51 1.1E-05 48.6 3.3 25 61-85 26-50 (211)
482 PRK11614 livF leucine/isoleuci 87.2 0.49 1.1E-05 49.7 3.2 25 61-85 33-57 (237)
483 COG4107 PhnK ABC-type phosphon 87.2 0.48 1E-05 48.4 2.9 26 60-85 33-58 (258)
484 PRK11264 putative amino-acid A 87.2 0.5 1.1E-05 50.0 3.3 25 61-85 31-55 (250)
485 PRK13652 cbiO cobalt transport 87.1 0.49 1.1E-05 51.2 3.3 25 61-85 32-56 (277)
486 cd03275 ABC_SMC1_euk Eukaryoti 87.1 0.47 1E-05 50.5 3.1 26 60-85 23-48 (247)
487 PRK13632 cbiO cobalt transport 87.1 0.49 1.1E-05 51.0 3.2 25 61-85 37-61 (271)
488 PRK14269 phosphate ABC transpo 87.1 0.44 9.5E-06 50.5 2.8 23 61-83 30-52 (246)
489 TIGR03411 urea_trans_UrtD urea 87.1 0.51 1.1E-05 49.7 3.3 25 61-85 30-54 (242)
490 PRK14246 phosphate ABC transpo 87.1 0.5 1.1E-05 50.7 3.3 27 61-87 38-64 (257)
491 PRK13643 cbiO cobalt transport 87.1 0.49 1.1E-05 51.6 3.3 25 61-85 34-58 (288)
492 PRK11247 ssuB aliphatic sulfon 87.1 0.5 1.1E-05 50.8 3.3 25 61-85 40-64 (257)
493 PRK13648 cbiO cobalt transport 87.1 0.5 1.1E-05 50.9 3.3 25 61-85 37-61 (269)
494 PRK14261 phosphate ABC transpo 87.1 0.45 9.7E-06 50.6 2.9 22 61-82 34-55 (253)
495 PRK10895 lipopolysaccharide AB 87.0 0.52 1.1E-05 49.7 3.3 25 61-85 31-55 (241)
496 TIGR02770 nickel_nikD nickel i 87.0 0.46 9.9E-06 49.8 2.9 25 61-85 14-38 (230)
497 PRK14247 phosphate ABC transpo 87.0 0.45 9.7E-06 50.4 2.8 23 61-83 31-53 (250)
498 COG1127 Ttg2A ABC-type transpo 87.0 2.6 5.6E-05 45.3 8.3 48 194-242 155-204 (263)
499 COG1121 ZnuC ABC-type Mn/Zn tr 87.0 0.52 1.1E-05 50.9 3.3 27 61-87 32-58 (254)
500 PRK14239 phosphate transporter 86.9 0.46 9.9E-06 50.4 2.9 22 61-82 33-54 (252)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=6e-58 Score=536.55 Aligned_cols=644 Identities=20% Similarity=0.268 Sum_probs=460.1
Q ss_pred hhHHHHHHHHHHHHHhcC--CCCCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCcccc
Q 003415 37 ASRFEAYNRLQAAAVAFG--EKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRF 114 (822)
Q Consensus 37 ~~Lld~id~Lr~~g~~~~--~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i 114 (822)
+.+...+|+||+....++ ..+++|+|||||+||+|||||||+|.|+.|.|||+|+|||+|++++|.+......+.+.|
T Consensus 5 ~~li~~vn~lqd~~~~l~~~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f 84 (657)
T KOG0446|consen 5 RLLIPLSNPLQDKLEILGSSSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASF 84 (657)
T ss_pred hhccccchHHHHHHHHhcCCCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhc
Confidence 456667788888776664 569999999999999999999999999999999999999999999999976654455555
Q ss_pred ccCCccccCCcccchhhHHHHHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHH
Q 003415 115 QEEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILS 194 (822)
Q Consensus 115 ~~~~~~ef~~~~~~~~~l~~~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~ 194 (822)
..... ...++|++++++.|+.++++..+.. +++|+.||.|+|.+|++++||+|||||+...+.++|+++....+++
T Consensus 85 ~~h~~---~~~~~D~~~vrkeI~~et~~~~g~~-kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~ 160 (657)
T KOG0446|consen 85 LTHDK---KKRFTDFEEVRKEIRSETDRITGSN-KGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKS 160 (657)
T ss_pred ccccc---ccccCCHHHHHHHHHhhHHHhcCCC-CCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHH
Confidence 42221 1235678889999999998876655 8999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCccccccccHHHHHHHhhhcCCcCCCCCCcE
Q 003415 195 MVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRWEVDRYLSASGYLGENTRPFF 274 (822)
Q Consensus 195 LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~~~~s~~~~v~~~l~~~G~l~~~~~gw~ 274 (822)
|+..|++++++|||+|.+|++|+++++++++|+++||.|.|||||+||+|++ +.+++..++ ..|......+||.
T Consensus 161 mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~Dlm-dkGt~~~~~-----L~g~~~~l~~g~v 234 (657)
T KOG0446|consen 161 MIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFM-DKGTNAVTR-----LVGRPITLKVGYV 234 (657)
T ss_pred HHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhh-hcCCcceee-----ecCCcccccccee
Confidence 9999999999999999999999999999999999999999999999999996 445554222 2355556678898
Q ss_pred EeecCCCCCCCcHHHHhhhhHhhHHHHHHhhhhhcCCCCccCcCCccChhHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Q 003415 275 VALPKDRNTVSNDEFRRQISQVDVEVLRHLRDGIKGGYDEEKFKPYIGFGCLRDYLESELQKRYKEAAPATLALLEQRCN 354 (822)
Q Consensus 275 v~~p~~R~~~s~~e~r~~~~q~D~~e~~~~~~~~~~~f~e~~~~~r~Gi~~Lr~~Ls~lL~~~I~~~LP~l~~~I~~~l~ 354 (822)
.++|+....+.. ...+.+....|..+|+... .+ .....++|+.+|.+.|+..|..||++++|.|+..|+.++.
T Consensus 235 ~vvnR~q~di~~---~k~~~~al~~e~~~f~~~p--~y--~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~ 307 (657)
T KOG0446|consen 235 GVVNRSQSIIDF---KKSILEALNDEVPSFESVP--SY--PILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLE 307 (657)
T ss_pred eeeccchhhhhh---hhhHHHHHHhhhhhhhccc--cc--cccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 886544332211 1122222233344444221 01 1124459999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccCcchhhhhhccCCCCCCcccccccCCch
Q 003415 355 EVTTEMSRMDSKIQATSDVAQLRRFAMMYAASISTHVGALIDGAADPAPEQWGKSTEEEQSESGIGSWPGVSIDIKPPNA 434 (822)
Q Consensus 355 ~~~~eL~~LG~~~~t~sd~~e~R~~L~~~~~~F~~~v~~al~G~y~~~~~fFG~t~~eer~~~g~~~~~rlra~i~~~N~ 434 (822)
+.++||.++|. ... ...--..++.+...|+..+...+.|..+.-+ -.
T Consensus 308 ~~~~el~~~g~-~~~---~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~-~~---------------------------- 354 (657)
T KOG0446|consen 308 KYQDELNRIGA-VDV---DLANSAALLAIIREDPRGLRTGVIGKLDLVP-TK---------------------------- 354 (657)
T ss_pred HHHHHHHHhcc-cCC---ccchhhHHHHHHHHHHHHHHHhhcccccccc-hh----------------------------
Confidence 99999999996 111 2223457777888898888888888876311 00
Q ss_pred hhhhccCcchhhhhhh-hhhhcccCCCC-ccCHHHHHHHHHhhcCCCCCCCcH-HHHHHHHHHHHhcchHHHHHHHHHHH
Q 003415 435 TLRLYGGAAFERVMHE-FRCAAYSIECP-QVSREKVANILLAHAGRGGGRGVM-EAAAEIARAAARSWFAPLLDTACDRL 511 (822)
Q Consensus 435 ~mrl~Ggaqfer~l~E-f~~~~~~~~~P-~vsreeV~~~l~~srG~ELPG~np-~aa~~LfreQS~~W~~pla~~h~~rv 511 (822)
.+.||+.....+++ |......++.. .++..+|..++...+|...++.-| .+...+...|.+...+|..++ |
T Consensus 355 --elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~~i~~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~----v 428 (657)
T KOG0446|consen 355 --ALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEKLVSEASGIRPSLFVPESSFESLVKGQIQSLRDPSLKC----V 428 (657)
T ss_pred --cccchhhhhhhhhhccchhhhcCCcchhhhHHHHHHHHHhccCCCccccCChHHHHHHHHHHHHHHhhhHHHH----H
Confidence 22334333223222 22223333333 677789999999999999666655 455556666666666444322 2
Q ss_pred HHHHHHHHHHHHHhhccCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHccccccCCCCCCCccccccccc
Q 003415 512 AFVLGNLFDIALERHCNQDSEYGNKTGNMDGYVSFHASLRQAYNRFVKDLSKQCKQLVRHHLDSVTSPYSLVCYENDFQG 591 (822)
Q Consensus 512 ~~i~~rfv~~al~~i~~~d~~~~~~~~~l~~~~~~~~~L~~~~~~fv~ele~~ck~k~~~~Les~trpyt~~~~~n~~~~ 591 (822)
..+.+.++..+- ++... + .+..||.+...+.+....++++.....++.++ ++....+-|-...|.+ |..
T Consensus 429 ~~v~~el~~~~~-~~~~~-------~-~l~rfp~l~~~~~~~~~~~~~~~~~~t~~~v~-~~i~~e~~yinT~h~d-f~~ 497 (657)
T KOG0446|consen 429 EEVHRELVRIVA-DSIRA-------T-ELKRFPVLYSELVEIASSLIAEGLDETKKAVK-NLIDLEQSYLNTDHPD-FRS 497 (657)
T ss_pred HHHHHHHHHHHH-HHhhh-------H-HHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHhcCcChh-hhh
Confidence 333333333322 22211 1 35569999999999999999999999888777 3334444444333333 222
Q ss_pred CCCCCccccccccccCcceeeecCCCcccccchhhhcccCCCCCCCCCcCCCCCCchh---hhhhhhhccccCCCCCCCC
Q 003415 592 GFGSGATSYRFNQASVSSFCFELSDGTAASRDETMRDQENVPPQKSTQQTTPGKGEEG---RAALQECQLTIPETPSPDQ 668 (822)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 668 (822)
+.+ |+ +.+. .++ +. ++ +|+..+ ...+.+.+.+.+...+++.
T Consensus 498 ~~~---------~a--------l~~~---------~~~-~~---~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (657)
T KOG0446|consen 498 LTD---------SA--------LSSV---------TSP-SI---AA------MKLISAQLLKEELGECNSALKAIKNAVG 541 (657)
T ss_pred hHH---------HH--------HHHh---------hcc-cc---cc------cccccccccccccccccchhhhhcchhh
Confidence 222 00 0000 000 00 00 111100 0000111111111111111
Q ss_pred CcchhhhhhhccCCCCCCCccchhhhhccCcchhhhhhhcCCccccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 003415 669 PCEVVCVVKKELGNYNEVGPKKRVSRIAGGKNAELLRVQNGGLLFGNGDSGGRSSSAFSEICSSAAQHFARIREVLVERS 748 (822)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~ 748 (822)
. .+..+...++..........+.|.++|.++.+.|-.|...-++.+
T Consensus 542 ~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sY~~iv~~~i~d~ 587 (657)
T KOG0446|consen 542 S----------------------------------IRLDPSDIVLSRALVLKKRECKETEEISSCPESYLNIVSDKLVDT 587 (657)
T ss_pred h----------------------------------hhhcccchhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 334444445555556666778899999999999999999999999
Q ss_pred hhhhhhhcccchhhHHHHHHhcceeeeecccchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003415 749 VASTLNSGFLTPCRERLVVAIGLDLFAVNDEKFMDMFVAPGAIDVLQNERKSLEKRQKILQSCLNEFKNVARA 821 (822)
Q Consensus 749 ~~~~l~~~fl~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (822)
||.+||..++.+|.++|-.+|..+|+. + +++++||++.... +..+|+-++||.+.|+.|++.+.+++.+
T Consensus 588 vpk~i~~~lv~~~k~~l~~~l~~~L~~-~-~~~~~~ll~E~~~--i~~~R~~~~~~l~~L~~a~~ii~~~~~~ 656 (657)
T KOG0446|consen 588 VPKALNHELLNEFKDDLPNELDQRLYA-G-DEQLESLLKEDPR--IKRRRELQQKRLLALQKALSILATVAQA 656 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-c-hhHHHHHHccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999 8 9999999999975 5667888899999999999999999875
No 2
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=8.1e-42 Score=358.58 Aligned_cols=228 Identities=29% Similarity=0.384 Sum_probs=190.1
Q ss_pred hhHHHHHHHHH-HHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccc
Q 003415 37 ASRFEAYNRLQ-AAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQ 115 (822)
Q Consensus 37 ~~Lld~id~Lr-~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~ 115 (822)
..|++.||+|| .+|+ ++.+++|+|||||+||+|||||||+|+|.+|.+++.|+|||||++|+|++.+. .+.+.+.
T Consensus 5 ~~l~~~i~~l~~~~G~--~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~--~~~~~~~ 80 (240)
T smart00053 5 IPLVNKLQDAFSALGQ--EKDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSST--EYAEFLH 80 (240)
T ss_pred HHHHHHHHHHHHHcCC--CCCCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCC--cceEEEe
Confidence 56899999999 8886 78899999999999999999999999999976789999999999999998654 2433332
Q ss_pred cCCccccCCcccchhhHHHHHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHH
Q 003415 116 EEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSM 195 (822)
Q Consensus 116 ~~~~~ef~~~~~~~~~l~~~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~L 195 (822)
.++..+.+++++++.|+++++.+ ...+++||+++|+|+|++|++|+|+||||||++..+..+++....+.|++|
T Consensus 81 -----~~~~~~~~~~~v~~~i~~~~~~~-~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~l 154 (240)
T smart00053 81 -----CKGKKFTDFDEVRNEIEAETDRV-TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDM 154 (240)
T ss_pred -----cCCcccCCHHHHHHHHHHHHHHh-cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHH
Confidence 12234567899999999988765 345679999999999999999999999999998777666667788899999
Q ss_pred HHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCccccccccHHHHHHHhhhcCCcCCCCCCcEE
Q 003415 196 VKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRWEVDRYLSASGYLGENTRPFFV 275 (822)
Q Consensus 196 V~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~~~~s~~~~v~~~l~~~G~l~~~~~gw~v 275 (822)
|+.||+++++|||+|++|+.|+.+++++++++.+||.+.|||||+||+|...+ +++ | -..+. |-.....+|||+
T Consensus 155 v~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~-~~~-~--~~~~~--~~~~~l~~g~~~ 228 (240)
T smart00053 155 IKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDE-GTD-A--RDILE--NKLLPLRRGYIG 228 (240)
T ss_pred HHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCc-cHH-H--HHHHh--CCccccCCCEEE
Confidence 99999999999999999999999999999999999999999999999999643 333 2 12332 212234679999
Q ss_pred eecCCCC
Q 003415 276 ALPKDRN 282 (822)
Q Consensus 276 ~~p~~R~ 282 (822)
+ +||+
T Consensus 229 v--~nr~ 233 (240)
T smart00053 229 V--VNRS 233 (240)
T ss_pred E--ECCC
Confidence 9 4554
No 3
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=100.00 E-value=2.2e-31 Score=293.62 Aligned_cols=293 Identities=20% Similarity=0.315 Sum_probs=217.2
Q ss_pred hhHHHHHHHHHHHHH----hcCCCCCCCEEEEEcCCCCchhhHHHHHhCCcccccccc-cccccceEEEEeeCCCCCCCc
Q 003415 37 ASRFEAYNRLQAAAV----AFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVE-MGTRRPLILQMVHDPTALDPR 111 (822)
Q Consensus 37 ~~Lld~id~Lr~~g~----~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g-~cTR~P~~i~lr~~~~~~~~~ 111 (822)
+.|+|.|.+.-+.-. +.+..-.||.+|||||||+||+||||.|..-++.|||+| +.||-|+.++|..+|..
T Consensus 282 kSLIDMYSEVLD~Ls~YD~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyH---- 357 (980)
T KOG0447|consen 282 KSLIDMYSEVLDVLSDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHH---- 357 (980)
T ss_pred HHHHHHHHHHHHHHhcccccccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcch----
Confidence 466776655444332 233456899999999999999999999999887778765 78999999999887754
Q ss_pred cccccCCccccCCcccchhhHHHHHHHHHHHHHh---ccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCc
Q 003415 112 CRFQEEDSEEYGSPVVLASAIADIIKSRTEALLK---KTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENT 188 (822)
Q Consensus 112 ~~i~~~~~~ef~~~~~~~~~l~~~I~~a~e~~l~---~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~ 188 (822)
+-...+.++||. ++..++|.+ ++..+|-.|+ ..|+.+|+.+|.+.+.||+++-++||||||+|...+.+...+.
T Consensus 358 VAqFrDSsREfD--LTKE~DLq~-LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dT 434 (980)
T KOG0447|consen 358 VALFKDSSREFD--LTKEEDLAA-LRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDT 434 (980)
T ss_pred hhhhcccccccc--ccchhHHHH-HHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccc
Confidence 223345567776 333444443 2333333343 3578999999999999999999999999999999988888888
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCccccccccHHHHHHHhhhcCCcCC
Q 003415 189 PDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRWEVDRYLSASGYLGE 268 (822)
Q Consensus 189 ~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~~~~s~~~~v~~~l~~~G~l~~ 268 (822)
.+.|..|.+.||+|||.||||+.++++|...+.+..++.++||.|.|||.|+||.|+..+..++...+.+.+.+ ..++.
T Consensus 435 Kd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG-KLFPM 513 (980)
T KOG0447|consen 435 KETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG-KLFPM 513 (980)
T ss_pred hHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhc-Cccch
Confidence 99999999999999999999999999999999999999999999999999999999976666665557777764 34566
Q ss_pred CCCCcEEeec-CCCCCCCcHHHHhhhhHhhHHHHHHhhhhhcCCCCccC-cCCccChhHHHHHHHHHHHHHHHHhchHHH
Q 003415 269 NTRPFFVALP-KDRNTVSNDEFRRQISQVDVEVLRHLRDGIKGGYDEEK-FKPYIGFGCLRDYLESELQKRYKEAAPATL 346 (822)
Q Consensus 269 ~~~gw~v~~p-~~R~~~s~~e~r~~~~q~D~~e~~~~~~~~~~~f~e~~-~~~r~Gi~~Lr~~Ls~lL~~~I~~~LP~l~ 346 (822)
..+|||.++- ++++..|-++.|+ -|..||..+ ..|.... -++++-..+|--..|.-+|..+++++-.--
T Consensus 514 KALGYfaVVTGrGnssdSIdaIR~-------YEE~FF~nS--kLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEqQa 584 (980)
T KOG0447|consen 514 KALGYFAVVTGKGNSSESIEAIRE-------YEEEFFQNS--KLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQQA 584 (980)
T ss_pred hhcceeEEEecCCCcchhHHHHHH-------HHHHHhhhh--HHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 6788888763 3333322233331 122344422 0111111 256788888888889999888877654433
No 4
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=99.91 E-value=7.3e-23 Score=221.94 Aligned_cols=264 Identities=14% Similarity=0.179 Sum_probs=188.2
Q ss_pred cCCCCCCcEEeecCCCCCCCcHHHHh--hhhHhhHHHHHHhhhhhcCCCCccCcCCccChhHHHHHHHHHHHHHHHHhch
Q 003415 266 LGENTRPFFVALPKDRNTVSNDEFRR--QISQVDVEVLRHLRDGIKGGYDEEKFKPYIGFGCLRDYLESELQKRYKEAAP 343 (822)
Q Consensus 266 l~~~~~gw~v~~p~~R~~~s~~e~r~--~~~q~D~~e~~~~~~~~~~~f~e~~~~~r~Gi~~Lr~~Ls~lL~~~I~~~LP 343 (822)
.....+|||+| +||+. ++... ++.+....|..||+... .|.. +++++||++|+.+|+++|.+||+++||
T Consensus 9 ~~pLklGy~~V--~nrsq---~di~~~~s~~~a~~~E~~fF~~~~--~~~~--~~~~~G~~~L~~~L~~~L~~~I~~~LP 79 (295)
T PF01031_consen 9 VIPLKLGYVGV--KNRSQ---QDINDGKSIEEARQKEKEFFSNHP--WYSS--PADRCGTPALRKRLSELLVEHIRKSLP 79 (295)
T ss_dssp SS--TT-EEEE----S-H---HHHHTTEEHHHHHHHHHHHHHHST--TTGG--GGGGSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccCCCeEEE--ecCCc---cccccCCCHHHHHHHHHHHHhccc--ccCC--cccccchHHHHHHHHHHHHHHHHHhCc
Confidence 34557789999 45643 34422 33445556778888642 2442 678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccCcchhhhhhccCCCCCC
Q 003415 344 ATLALLEQRCNEVTTEMSRMDSKIQATSDVAQLRRFAMMYAASISTHVGALIDGAADPAPEQWGKSTEEEQSESGIGSWP 423 (822)
Q Consensus 344 ~l~~~I~~~l~~~~~eL~~LG~~~~t~sd~~e~R~~L~~~~~~F~~~v~~al~G~y~~~~~fFG~t~~eer~~~g~~~~~ 423 (822)
.|+.+|++.+.+++.+|.+||+++.+ ++.+++.+|+.++..|++.++++++|.|.. .+.
T Consensus 80 ~l~~~I~~~l~~~~~eL~~lG~~~~~--~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~--~~~----------------- 138 (295)
T PF01031_consen 80 SLKSEIQKKLQEAEKELKRLGPPRPE--TPEEQRAYLLQIISKFSRIFKDAIDGEYSD--EFS----------------- 138 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHCSSS--CHHHHHHHHHHHHHHHHHHHHHHHTT--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHhcCCccc--ccc-----------------
Confidence 99999999999999999999999983 378899999999999999999999999983 111
Q ss_pred cccccccCCchhhhhccCcchhhhhhhh-hhhcccCC-CCccCHHHHHHHHHhhcCCCCCCC-cHHHHHHHHHHHHhcch
Q 003415 424 GVSIDIKPPNATLRLYGGAAFERVMHEF-RCAAYSIE-CPQVSREKVANILLAHAGRGGGRG-VMEAAAEIARAAARSWF 500 (822)
Q Consensus 424 rlra~i~~~N~~mrl~Ggaqfer~l~Ef-~~~~~~~~-~P~vsreeV~~~l~~srG~ELPG~-np~aa~~LfreQS~~W~ 500 (822)
.-.+.|++.+...+.++ ......+. +..++.++|..+++.++|+++||+ +..+...|++.|.+.|.
T Consensus 139 -----------~~~l~~~ari~~~f~~~~~~~~~~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~ 207 (295)
T PF01031_consen 139 -----------TNELRGGARIRYIFNEWFDKFLEKIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLE 207 (295)
T ss_dssp -----------TTS--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTH
T ss_pred -----------ccccchhhHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHH
Confidence 01223333332232222 11111111 115677899999999999999999 67888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHccccccCC-CC
Q 003415 501 APLLDTACDRLAFVLGNLFDIALERHCNQDSEYGNKTGNMDGYVSFHASLRQAYNRFVKDLSKQCKQLVRHHLDSVT-SP 579 (822)
Q Consensus 501 ~pla~~h~~rv~~i~~rfv~~al~~i~~~d~~~~~~~~~l~~~~~~~~~L~~~~~~fv~ele~~ck~k~~~~Les~t-rp 579 (822)
+-+..+++.|+..+.+.+..++.... ..||.|...++++...++++..+.+++.+..-++... ..
T Consensus 208 -~Pa~~cv~~V~~~l~~i~~~~~~~~~-------------~~fp~L~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i 273 (295)
T PF01031_consen 208 -EPALQCVEEVHEELQRIVEQVLEKEF-------------ERFPNLKEAIKEAVQQLLEECREPAKEMIENLIDMELSYI 273 (295)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHCHHH-------------TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred -hHHHHHHHHHHHHHHHHHHhhcchhc-------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 55678889899888888777664422 2388999999999999999999999999988888877 44
Q ss_pred CCCcc
Q 003415 580 YSLVC 584 (822)
Q Consensus 580 yt~~~ 584 (822)
||.+.
T Consensus 274 ~T~~~ 278 (295)
T PF01031_consen 274 NTQHP 278 (295)
T ss_dssp -TTST
T ss_pred CCCCH
Confidence 44444
No 5
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.85 E-value=2.3e-20 Score=183.92 Aligned_cols=168 Identities=21% Similarity=0.276 Sum_probs=125.4
Q ss_pred EEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHHHHH
Q 003415 62 IVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKSRTE 141 (822)
Q Consensus 62 IVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~a~e 141 (822)
|+|+|.+|+|||||||||+|.++.|.+.+.||++|++|.....+............ .......+..++.+.+.....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 77 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFK---DGSEEFEELNELREQIDEEFD 77 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEE---EETEEBCCHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCcccccccccccc---ccccchhhHHHHHHhhhcccc
Confidence 79999999999999999999998779989999999999998776532111111100 011122345666666665544
Q ss_pred HHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH
Q 003415 142 ALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL 221 (822)
Q Consensus 142 ~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~ 221 (822)
.. ......++..++.+.+..+...+++||||||+....... .+++.+|+ +...++|+|++++.++.+++
T Consensus 78 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~---------~~~~~~~~-~~~d~vi~V~~~~~~~~~~~ 146 (168)
T PF00350_consen 78 SI-EGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH---------TEITEEYL-PKADVVIFVVDANQDLTESD 146 (168)
T ss_dssp HH-HTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT---------SHHHHHHH-STTEEEEEEEETTSTGGGHH
T ss_pred cc-cccccccccceeEEeeccccccceEEEeCCccccchhhh---------HHHHHHhh-ccCCEEEEEeccCcccchHH
Confidence 33 223357778888999999999999999999997633211 17889999 66679999999999999999
Q ss_pred HHHHHHHhCCCCCcEEEEeeCC
Q 003415 222 WLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 222 il~lar~~Dp~g~RTIgViTK~ 243 (822)
...+.+..++...|+|+|+||.
T Consensus 147 ~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 147 MEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHHHHHTTTCSSEEEEEE-G
T ss_pred HHHHHHHhcCCCCeEEEEEcCC
Confidence 9999999999999999999994
No 6
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=2.8e-13 Score=137.76 Aligned_cols=123 Identities=18% Similarity=0.168 Sum_probs=88.0
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccccccccc--ccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVEM--GTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADI 135 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~--cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~ 135 (822)
.+|+|+++|+.|+||||+||+|+|.+-.+|.+.+ .||.+. +
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iN-------------------------------f------ 65 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLIN-------------------------------F------ 65 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeE-------------------------------E------
Confidence 8899999999999999999999997744343221 122110 0
Q ss_pred HHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEE--ecC
Q 003415 136 IKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFL--QQS 213 (822)
Q Consensus 136 I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaV--v~A 213 (822)
| ++ ...+.|||+||+.++.. +....+.+..++..|++...+|.++| +|+
T Consensus 66 ---------------f-------~~----~~~~~lVDlPGYGyAkv---~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~ 116 (200)
T COG0218 66 ---------------F-------EV----DDELRLVDLPGYGYAKV---PKEVKEKWKKLIEEYLEKRANLKGVVLLIDA 116 (200)
T ss_pred ---------------E-------Ee----cCcEEEEeCCCcccccC---CHHHHHHHHHHHHHHHhhchhheEEEEEEEC
Confidence 0 00 02388999999999865 45778899999999999877776665 477
Q ss_pred CcccchHHHHHHHHHhCCCCCcEEEEeeCCCccc
Q 003415 214 SVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRL 247 (822)
Q Consensus 214 ~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~ 247 (822)
...+...+ .++...+...+-.++.|+||+|++.
T Consensus 117 r~~~~~~D-~em~~~l~~~~i~~~vv~tK~DKi~ 149 (200)
T COG0218 117 RHPPKDLD-REMIEFLLELGIPVIVVLTKADKLK 149 (200)
T ss_pred CCCCcHHH-HHHHHHHHHcCCCeEEEEEccccCC
Confidence 66665544 2444444455789999999999963
No 7
>PRK09866 hypothetical protein; Provisional
Probab=99.32 E-value=8.5e-10 Score=128.47 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=51.8
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEee
Q 003415 35 TRASRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVH 103 (822)
Q Consensus 35 ~~~~Lld~id~Lr~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~ 103 (822)
..+.+-+.|.+|+..-..+.. .-|.++|||..|+|||||+|+|+|..+.|.+...+|..|+.++...
T Consensus 47 drR~i~~ri~~L~~~L~Kv~~--~~~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~p 113 (741)
T PRK09866 47 SQPNIAERHAMLNNELRKISR--LEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTP 113 (741)
T ss_pred cHHHHHHHHHHHHHHHHHHhc--cceEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecC
Confidence 456677777777665432221 1299999999999999999999999998887889999999665543
No 8
>COG1159 Era GTPase [General function prediction only]
Probab=99.14 E-value=9.1e-10 Score=118.05 Aligned_cols=120 Identities=21% Similarity=0.366 Sum_probs=83.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHHHH
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKSRT 140 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~a~ 140 (822)
-|++||.+|+|||||||+|+|.++. ++|+.| +.+|+ .|+
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~Kis-----IvS~k~---QTTR~------------------------------~I~--- 46 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKIS-----IVSPKP---QTTRN------------------------------RIR--- 46 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceE-----eecCCc---chhhh------------------------------hee---
Confidence 4799999999999999999999975 444444 11110 000
Q ss_pred HHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH
Q 003415 141 EALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS 220 (822)
Q Consensus 141 e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq 220 (822)
+ |..-+-.+++||||||++.... ...+.+.+.+.+-++.-+ +||+|++++..|..-
T Consensus 47 ---------G---------I~t~~~~QiIfvDTPGih~pk~-----~l~~~m~~~a~~sl~dvD-lilfvvd~~~~~~~~ 102 (298)
T COG1159 47 ---------G---------IVTTDNAQIIFVDTPGIHKPKH-----ALGELMNKAARSALKDVD-LILFVVDADEGWGPG 102 (298)
T ss_pred ---------E---------EEEcCCceEEEEeCCCCCCcch-----HHHHHHHHHHHHHhccCc-EEEEEEeccccCCcc
Confidence 0 0111236899999999987632 344556666777777777 999999998777654
Q ss_pred H--HHHHHHHhCCCCCcEEEEeeCCCcccc
Q 003415 221 L--WLDAIREIDPTFRRTVIVVSKFDNRLK 248 (822)
Q Consensus 221 ~--il~lar~~Dp~g~RTIgViTK~D~~~~ 248 (822)
+ +++..+. ...+.|.++||.|+..+
T Consensus 103 d~~il~~lk~---~~~pvil~iNKID~~~~ 129 (298)
T COG1159 103 DEFILEQLKK---TKTPVILVVNKIDKVKP 129 (298)
T ss_pred HHHHHHHHhh---cCCCeEEEEEccccCCc
Confidence 3 5555554 45799999999999644
No 9
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.12 E-value=2.5e-09 Score=114.90 Aligned_cols=117 Identities=23% Similarity=0.314 Sum_probs=73.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHHH
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKSR 139 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~a 139 (822)
.|+|||.+|+|||||+|+|+|.++..++. ...||.++.-
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~---------------------------------------- 41 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISG---------------------------------------- 41 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEE----------------------------------------
Confidence 58999999999999999999988653221 1123322110
Q ss_pred HHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch
Q 003415 140 TEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS 219 (822)
Q Consensus 140 ~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n 219 (822)
|...+..+++|+||||+..... ...+.+...+.++++..+ ++|+|++++.....
T Consensus 42 --------------------i~~~~~~qii~vDTPG~~~~~~-----~l~~~~~~~~~~~l~~aD-vvl~VvD~~~~~~~ 95 (270)
T TIGR00436 42 --------------------IHTTGASQIIFIDTPGFHEKKH-----SLNRLMMKEARSAIGGVD-LILFVVDSDQWNGD 95 (270)
T ss_pred --------------------EEEcCCcEEEEEECcCCCCCcc-----hHHHHHHHHHHHHHhhCC-EEEEEEECCCCCch
Confidence 0001123589999999975421 222334445677888887 66777777654333
Q ss_pred -HHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 220 -SLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 220 -q~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
..++...+. .+.+.|.|+||.|+.
T Consensus 96 ~~~i~~~l~~---~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 96 GEFVLTKLQN---LKRPVVLTRNKLDNK 120 (270)
T ss_pred HHHHHHHHHh---cCCCEEEEEECeeCC
Confidence 223444433 467899999999985
No 10
>PRK00089 era GTPase Era; Reviewed
Probab=99.10 E-value=3.7e-09 Score=114.45 Aligned_cols=74 Identities=12% Similarity=0.164 Sum_probs=47.9
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
.+++||||||+..... ...+.+...+..++...+ +|++|++++..+...+ ..+++.+...+.+.|.|+||.|+
T Consensus 53 ~qi~~iDTPG~~~~~~-----~l~~~~~~~~~~~~~~~D-~il~vvd~~~~~~~~~-~~i~~~l~~~~~pvilVlNKiDl 125 (292)
T PRK00089 53 AQIIFVDTPGIHKPKR-----ALNRAMNKAAWSSLKDVD-LVLFVVDADEKIGPGD-EFILEKLKKVKTPVILVLNKIDL 125 (292)
T ss_pred ceEEEEECCCCCCchh-----HHHHHHHHHHHHHHhcCC-EEEEEEeCCCCCChhH-HHHHHHHhhcCCCEEEEEECCcC
Confidence 5789999999975431 223344556677788887 5666677775444332 22333332335799999999999
Q ss_pred c
Q 003415 246 R 246 (822)
Q Consensus 246 ~ 246 (822)
.
T Consensus 126 ~ 126 (292)
T PRK00089 126 V 126 (292)
T ss_pred C
Confidence 5
No 11
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.09 E-value=3.9e-10 Score=111.95 Aligned_cols=75 Identities=11% Similarity=0.120 Sum_probs=46.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcC-CCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLAS-PPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik-~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D 244 (822)
..+.||||||+..-.. ... -+.+..+|+. ++-.+|++|+||++ +.. -+.++.++-..|.++|.|+||+|
T Consensus 47 ~~~~lvDlPG~ysl~~----~s~---ee~v~~~~l~~~~~D~ii~VvDa~~-l~r--~l~l~~ql~e~g~P~vvvlN~~D 116 (156)
T PF02421_consen 47 QQVELVDLPGIYSLSS----KSE---EERVARDYLLSEKPDLIIVVVDATN-LER--NLYLTLQLLELGIPVVVVLNKMD 116 (156)
T ss_dssp EEEEEEE----SSSSS----SSH---HHHHHHHHHHHTSSSEEEEEEEGGG-HHH--HHHHHHHHHHTTSSEEEEEETHH
T ss_pred ceEEEEECCCcccCCC----CCc---HHHHHHHHHhhcCCCEEEEECCCCC-HHH--HHHHHHHHHHcCCCEEEEEeCHH
Confidence 5688999999976432 111 1355567763 33348888888875 332 24566666566899999999999
Q ss_pred cccccc
Q 003415 245 NRLKEF 250 (822)
Q Consensus 245 ~~~~~~ 250 (822)
...+.+
T Consensus 117 ~a~~~g 122 (156)
T PF02421_consen 117 EAERKG 122 (156)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 965443
No 12
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.04 E-value=1.7e-09 Score=108.48 Aligned_cols=123 Identities=18% Similarity=0.184 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCccccccccc--ccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHH
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEM--GTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIAD 134 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~--cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~ 134 (822)
-..|.|+|+|+.++||||++++|+|..+....+.. +|+-
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~--------------------------------------- 56 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQL--------------------------------------- 56 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceE---------------------------------------
Confidence 47889999999999999999999997643111000 1100
Q ss_pred HHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCC--cEEEEEec
Q 003415 135 IIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPH--RILVFLQQ 212 (822)
Q Consensus 135 ~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~--sIILaVv~ 212 (822)
+....+. .++.|+||||+..... +......+..++..|++... ..++.|++
T Consensus 57 --------------------~~~~~~~----~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd 109 (179)
T TIGR03598 57 --------------------INFFEVN----DGFRLVDLPGYGYAKV---SKEEKEKWQKLIEEYLEKRENLKGVVLLMD 109 (179)
T ss_pred --------------------EEEEEeC----CcEEEEeCCCCccccC---ChhHHHHHHHHHHHHHHhChhhcEEEEEec
Confidence 0011111 3689999999865432 33445667888888987542 35777778
Q ss_pred CCcccchHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 213 SSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 213 A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
++..+..++. ++.+.++..+.+.|+|+||+|+.
T Consensus 110 ~~~~~~~~~~-~~~~~~~~~~~pviiv~nK~D~~ 142 (179)
T TIGR03598 110 IRHPLKELDL-EMLEWLRERGIPVLIVLTKADKL 142 (179)
T ss_pred CCCCCCHHHH-HHHHHHHHcCCCEEEEEECcccC
Confidence 8776666553 44455555688999999999985
No 13
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.03 E-value=2.6e-09 Score=113.87 Aligned_cols=154 Identities=19% Similarity=0.241 Sum_probs=95.0
Q ss_pred cccCcchhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCC
Q 003415 29 ATDSASTRASRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTA 107 (822)
Q Consensus 29 ~~l~s~~~~~Lld~id~Lr~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~ 107 (822)
..+....+..+++...+|+... .....|+|+|..++|||||+|+|+|.....++. ..+|+.+....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~------- 73 (249)
T cd01853 7 QFFPDAAQTKALELEAKGKEEL------DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVS------- 73 (249)
T ss_pred ccCcHHHHHHHHHHHHHhhhhc------cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEE-------
Confidence 3455567778888888887643 356799999999999999999999987543321 11232221110
Q ss_pred CCCccccccCCccccCCcccchhhHHHHHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCC
Q 003415 108 LDPRCRFQEEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPEN 187 (822)
Q Consensus 108 ~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~ 187 (822)
... +...++||||||+......+ .
T Consensus 74 --------------------------------------------------~~~---~g~~i~vIDTPGl~~~~~~~---~ 97 (249)
T cd01853 74 --------------------------------------------------GTV---DGFKLNIIDTPGLLESVMDQ---R 97 (249)
T ss_pred --------------------------------------------------EEE---CCeEEEEEECCCcCcchhhH---H
Confidence 000 12568999999997653211 1
Q ss_pred chHHHHHHHHHhcCCC-CcEEEEEecCCc-c--cchHHHHHHHHH-hCCC-CCcEEEEeeCCCccccccc
Q 003415 188 TPDEILSMVKSLASPP-HRILVFLQQSSV-E--WCSSLWLDAIRE-IDPT-FRRTVIVVSKFDNRLKEFS 251 (822)
Q Consensus 188 ~~~~v~~LV~~Yik~~-~sIILaVv~A~~-D--~~nq~il~lar~-~Dp~-g~RTIgViTK~D~~~~~~s 251 (822)
..+.+.+.+..|+++. -.+||+|...+. . .....+++..++ +... ..++|.|+||+|...+.+.
T Consensus 98 ~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~ 167 (249)
T cd01853 98 VNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGL 167 (249)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCC
Confidence 2345566778899742 346777764432 2 222234444443 3221 3689999999999876654
No 14
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.03 E-value=2e-09 Score=117.28 Aligned_cols=155 Identities=17% Similarity=0.273 Sum_probs=100.5
Q ss_pred ccccccccCcchhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEe
Q 003415 24 HHQLSATDSASTRASRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMV 102 (822)
Q Consensus 24 ~~~~~~~l~s~~~~~Lld~id~Lr~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr 102 (822)
+-...++|....|..|++.+.+|++.. .....|+|+|..++||||++|+|+|......+. ..+|..|+...
T Consensus 9 ~w~g~~~~~~~tq~~l~~~l~~l~~~~------~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~-- 80 (313)
T TIGR00991 9 EWVGIQQFPPATQTKLLELLGKLKEED------VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS-- 80 (313)
T ss_pred ceeccccCCHHHHHHHHHHHHhccccc------ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE--
Confidence 455677999999999999999999854 578899999999999999999999987542220 11222221110
Q ss_pred eCCCCCCCccccccCCccccCCcccchhhHHHHHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCC
Q 003415 103 HDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKK 182 (822)
Q Consensus 103 ~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~ 182 (822)
..+ +...++||||||+....
T Consensus 81 -------------------------------------------------------~~~---~G~~l~VIDTPGL~d~~-- 100 (313)
T TIGR00991 81 -------------------------------------------------------RTR---AGFTLNIIDTPGLIEGG-- 100 (313)
T ss_pred -------------------------------------------------------EEE---CCeEEEEEECCCCCchH--
Confidence 000 22468999999997542
Q ss_pred CCCCCchHHHHHHHHHhcCC-CCcEEEEEecCCc-cc--chHHHHHHHHHh--CCCCCcEEEEeeCCCcccccc
Q 003415 183 GEPENTPDEILSMVKSLASP-PHRILVFLQQSSV-EW--CSSLWLDAIREI--DPTFRRTVIVVSKFDNRLKEF 250 (822)
Q Consensus 183 ~q~~~~~~~v~~LV~~Yik~-~~sIILaVv~A~~-D~--~nq~il~lar~~--Dp~g~RTIgViTK~D~~~~~~ 250 (822)
...+.+.+.++.|+.. .-.+||+|...+. .+ ....+++..+++ +.-..++|+|+|+.|...+.+
T Consensus 101 ----~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~ 170 (313)
T TIGR00991 101 ----YINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDG 170 (313)
T ss_pred ----HHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCC
Confidence 2233456777777754 2336666643221 12 223355555543 222478999999999875543
No 15
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.03 E-value=1.8e-09 Score=100.59 Aligned_cols=115 Identities=22% Similarity=0.317 Sum_probs=70.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccccc-cccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHHH
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVRE-VEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKSR 139 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r~-~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~a 139 (822)
+|+|+|..++|||||+|+|+|......+ ...+|+.+..-...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~------------------------------------- 43 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFE------------------------------------- 43 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEE-------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeee-------------------------------------
Confidence 5899999999999999999997542222 23355554210000
Q ss_pred HHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch
Q 003415 140 TEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS 219 (822)
Q Consensus 140 ~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n 219 (822)
+ ....++||||||+......+ ...+.+.. +.+.+..-+ +|+.|++++. ...
T Consensus 44 --------------------~---~~~~~~~vDtpG~~~~~~~~---~~~~~~~~-~~~~~~~~d-~ii~vv~~~~-~~~ 94 (116)
T PF01926_consen 44 --------------------Y---NNKKFILVDTPGINDGESQD---NDGKEIRK-FLEQISKSD-LIIYVVDASN-PIT 94 (116)
T ss_dssp --------------------E---TTEEEEEEESSSCSSSSHHH---HHHHHHHH-HHHHHCTES-EEEEEEETTS-HSH
T ss_pred --------------------e---ceeeEEEEeCCCCcccchhh---HHHHHHHH-HHHHHHHCC-EEEEEEECCC-CCC
Confidence 0 12356899999997543211 11122333 344445555 6777777765 333
Q ss_pred HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 220 SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 220 q~il~lar~~Dp~g~RTIgViTK 242 (822)
....++.+++. .+.++|.|+||
T Consensus 95 ~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 95 EDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHHHHHHh-cCCCEEEEEcC
Confidence 33455666665 68999999998
No 16
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.99 E-value=3.2e-09 Score=107.05 Aligned_cols=122 Identities=21% Similarity=0.207 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccccccccc--ccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVEM--GTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADI 135 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~--cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~ 135 (822)
.+|.|+|||++++||||||++|+|.+|....+.. ||+.+
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--------------------------------------- 63 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI--------------------------------------- 63 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEE---------------------------------------
Confidence 7899999999999999999999997643221110 11110
Q ss_pred HHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCc--EEEEEecC
Q 003415 136 IKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHR--ILVFLQQS 213 (822)
Q Consensus 136 I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~s--IILaVv~A 213 (822)
....+ ..+++|+||||+.... .+....+....++..|++..+. +++.|+++
T Consensus 64 --------------------~~~~~----~~~l~l~DtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ 116 (196)
T PRK00454 64 --------------------NFFEV----NDKLRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDS 116 (196)
T ss_pred --------------------EEEec----CCeEEEeCCCCCCCcC---CCchHHHHHHHHHHHHHHhCccceEEEEEEec
Confidence 00001 1579999999976532 2334456678888999987654 35555666
Q ss_pred CcccchHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 214 SVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 214 ~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
+......+ ..+.+.+...+.+.+.|+||+|+.
T Consensus 117 ~~~~~~~~-~~i~~~l~~~~~~~iiv~nK~Dl~ 148 (196)
T PRK00454 117 RHPLKELD-LQMIEWLKEYGIPVLIVLTKADKL 148 (196)
T ss_pred CCCCCHHH-HHHHHHHHHcCCcEEEEEECcccC
Confidence 54433322 222233334467889999999985
No 17
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.95 E-value=1.1e-08 Score=114.11 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
-..|.|++||..|+|||||||+|+|..+.+.+.-..|+-|+
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~--------------------------------------- 227 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPT--------------------------------------- 227 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCE---------------------------------------
Confidence 36799999999999999999999997654222111232221
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE 216 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D 216 (822)
.-.|..|+...+.|+||||++..- +.+..+.++... .++.+.+ +||+|+|++..
T Consensus 228 --------------------~~~i~~~~~~~i~l~DT~G~~~~l----~~~lie~f~~tl-e~~~~AD-lil~VvD~s~~ 281 (351)
T TIGR03156 228 --------------------TRRLDLPDGGEVLLTDTVGFIRDL----PHELVAAFRATL-EEVREAD-LLLHVVDASDP 281 (351)
T ss_pred --------------------EEEEEeCCCceEEEEecCcccccC----CHHHHHHHHHHH-HHHHhCC-EEEEEEECCCC
Confidence 112223334578999999997532 233444455533 4566777 77888887654
Q ss_pred cchH---HHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 217 WCSS---LWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 217 ~~nq---~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
.... .+..+.+++.-...+.|.|+||.|+.
T Consensus 282 ~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 282 DREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred chHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 3322 23456666654567899999999984
No 18
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.94 E-value=5.9e-09 Score=106.43 Aligned_cols=79 Identities=19% Similarity=0.368 Sum_probs=46.1
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHh-CCC-CCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREI-DPT-FRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~-Dp~-g~RTIgViT 241 (822)
..++||||||+..... ..+.....+...+......++ +||+|+++.. +...+ +++..+++ .+. ...+|.|+|
T Consensus 49 ~~i~viDTPG~~d~~~--~~~~~~~~i~~~~~~~~~g~~-~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T 124 (196)
T cd01852 49 RRVNVIDTPGLFDTSV--SPEQLSKEIVRCLSLSAPGPH-AFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFT 124 (196)
T ss_pred eEEEEEECcCCCCccC--ChHHHHHHHHHHHHhcCCCCE-EEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEE
Confidence 4689999999986532 111122222222222334455 7777888775 55443 45545443 221 368999999
Q ss_pred CCCcccc
Q 003415 242 KFDNRLK 248 (822)
Q Consensus 242 K~D~~~~ 248 (822)
|.|.+..
T Consensus 125 ~~d~l~~ 131 (196)
T cd01852 125 RGDDLEG 131 (196)
T ss_pred CccccCC
Confidence 9998644
No 19
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.94 E-value=5.2e-09 Score=117.74 Aligned_cols=121 Identities=21% Similarity=0.255 Sum_probs=85.4
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHH
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKS 138 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~ 138 (822)
|.|++||.+|+|||||.|+|+|.+.-.++. -.+||=
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRD------------------------------------------- 40 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRD------------------------------------------- 40 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccC-------------------------------------------
Confidence 899999999999999999999998654331 112321
Q ss_pred HHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccc
Q 003415 139 RTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWC 218 (822)
Q Consensus 139 a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~ 218 (822)
.++=..+.-. ..+++|||+|+.... .+...+.++..+..-|+..+ +||+|+++...+.
T Consensus 41 ----------------r~y~~~~~~~-~~f~lIDTgGl~~~~----~~~l~~~i~~Qa~~Ai~eAD-vilfvVD~~~Git 98 (444)
T COG1160 41 ----------------RIYGDAEWLG-REFILIDTGGLDDGD----EDELQELIREQALIAIEEAD-VILFVVDGREGIT 98 (444)
T ss_pred ----------------CccceeEEcC-ceEEEEECCCCCcCC----chHHHHHHHHHHHHHHHhCC-EEEEEEeCCCCCC
Confidence 1111112112 238999999997543 13567788888889999888 7888888887666
Q ss_pred hHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 219 SSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 219 nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
..+ ..+|+.+-+.++++|.|+||+|..
T Consensus 99 ~~D-~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 99 PAD-EEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred HHH-HHHHHHHHhcCCCEEEEEEcccCc
Confidence 654 333444435679999999999984
No 20
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.88 E-value=3.8e-08 Score=100.50 Aligned_cols=125 Identities=19% Similarity=0.251 Sum_probs=75.9
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
-..|.|+|+|+.++||||||++|++..+.+.+....|.-|
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~---------------------------------------- 78 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDP---------------------------------------- 78 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccc----------------------------------------
Confidence 4579999999999999999999999875422211111111
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE 216 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D 216 (822)
....+..++...++|+||||+..... ....+....+.. ++.+.+ .+++|++++..
T Consensus 79 -------------------~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~~~~~~~~~~~-~~~~~d-~ii~v~D~~~~ 133 (204)
T cd01878 79 -------------------TTRRLRLPDGREVLLTDTVGFIRDLP----HQLVEAFRSTLE-EVAEAD-LLLHVVDASDP 133 (204)
T ss_pred -------------------eeEEEEecCCceEEEeCCCccccCCC----HHHHHHHHHHHH-HHhcCC-eEEEEEECCCC
Confidence 01111222223689999999864321 122233344332 344555 66667777643
Q ss_pred cch---HHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 217 WCS---SLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 217 ~~n---q~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
... ..+.++.+.+...+.+.|+|+||.|+.
T Consensus 134 ~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~ 166 (204)
T cd01878 134 DYEEQIETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred ChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence 332 234566666655568999999999984
No 21
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.87 E-value=5.3e-08 Score=99.74 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=24.0
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..|+|+|+.++|||||+|+|+|..++
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~ 27 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHE 27 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCC
Confidence 47999999999999999999998776
No 22
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.87 E-value=1.5e-08 Score=98.95 Aligned_cols=113 Identities=20% Similarity=0.255 Sum_probs=69.1
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHHH
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKSR 139 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~a 139 (822)
|.|+|+|+.++|||||+++|++-.+.......+|+- ...
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~-----~~~------------------------------------ 39 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQH-----IGA------------------------------------ 39 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEe-----ecc------------------------------------
Confidence 789999999999999999999887753211111110 000
Q ss_pred HHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch
Q 003415 140 TEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS 219 (822)
Q Consensus 140 ~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n 219 (822)
..+.+..+...+++|+||||.. ....+...++...+ ++++|++++.....
T Consensus 40 ----------------~~~~~~~~~~~~~~iiDtpG~~-------------~~~~~~~~~~~~~d-~il~v~d~~~~~~~ 89 (168)
T cd01887 40 ----------------FEVPAEVLKIPGITFIDTPGHE-------------AFTNMRARGASLTD-IAILVVAADDGVMP 89 (168)
T ss_pred ----------------EEEecccCCcceEEEEeCCCcH-------------HHHHHHHHHHhhcC-EEEEEEECCCCccH
Confidence 0000100134689999999962 12345556666666 56666666643322
Q ss_pred H--HHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 220 S--LWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 220 q--~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
+ ..+.+++. .+.+.|+|+||.|+.
T Consensus 90 ~~~~~~~~~~~---~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 90 QTIEAIKLAKA---ANVPFIVALNKIDKP 115 (168)
T ss_pred HHHHHHHHHHH---cCCCEEEEEEceecc
Confidence 2 23444443 467899999999984
No 23
>PRK11058 GTPase HflX; Provisional
Probab=98.86 E-value=2.9e-08 Score=113.56 Aligned_cols=125 Identities=19% Similarity=0.263 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
-.+|.|++||.+|+|||||+|+|+|-.+.+.+.-..|+-|+.
T Consensus 195 ~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~-------------------------------------- 236 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTL-------------------------------------- 236 (426)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCce--------------------------------------
Confidence 467999999999999999999999977652221112322211
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE 216 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D 216 (822)
-.+..++...++|+||||++... +.+..+.+... ..++++.+ +||+|+|++..
T Consensus 237 ---------------------~~i~l~~~~~~~l~DTaG~~r~l----p~~lve~f~~t-l~~~~~AD-lIL~VvDaS~~ 289 (426)
T PRK11058 237 ---------------------RRIDVADVGETVLADTVGFIRHL----PHDLVAAFKAT-LQETRQAT-LLLHVVDAADV 289 (426)
T ss_pred ---------------------EEEEeCCCCeEEEEecCcccccC----CHHHHHHHHHH-HHHhhcCC-EEEEEEeCCCc
Confidence 01111222356899999996531 22333444443 35566666 77888887754
Q ss_pred cchH---HHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 217 WCSS---LWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 217 ~~nq---~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
.... .+.++.+++...+.+.|.|+||+|+.
T Consensus 290 ~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 290 RVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred cHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 3222 13456666655578999999999984
No 24
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.86 E-value=1.8e-08 Score=96.77 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=45.6
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
.++.|+||||+..... .....+..+...++...+ ++++|+++........ ..+.+.+...+.+.++|+||.|+
T Consensus 51 ~~~~liDtpG~~~~~~-----~~~~~~~~~~~~~~~~~d-~i~~v~d~~~~~~~~~-~~~~~~~~~~~~~~iiv~nK~Dl 123 (168)
T cd04163 51 AQIIFVDTPGIHKPKK-----KLGERMVKAAWSALKDVD-LVLFVVDASEPIGEGD-EFILELLKKSKTPVILVLNKIDL 123 (168)
T ss_pred eEEEEEECCCCCcchH-----HHHHHHHHHHHHHHHhCC-EEEEEEECCCccCchH-HHHHHHHHHhCCCEEEEEEchhc
Confidence 5789999999865432 112234556677788888 4555566654323222 22333333336789999999998
Q ss_pred c
Q 003415 246 R 246 (822)
Q Consensus 246 ~ 246 (822)
.
T Consensus 124 ~ 124 (168)
T cd04163 124 V 124 (168)
T ss_pred c
Confidence 5
No 25
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.86 E-value=7.6e-08 Score=106.89 Aligned_cols=122 Identities=16% Similarity=0.207 Sum_probs=76.5
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
-++.|.+||.+||||||||++|++-+ |..+. ...|+.|+.-.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~------------------------------------ 199 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGV------------------------------------ 199 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEE------------------------------------
Confidence 46789999999999999999999865 21211 11244432111
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE 216 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D 216 (822)
++.++...++|+||||++..+..+ .-+.....++++..+ +++.|+|++..
T Consensus 200 -----------------------v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~flrhie~a~-vlI~ViD~s~~ 249 (335)
T PRK12299 200 -----------------------VRVDDYKSFVIADIPGLIEGASEG------AGLGHRFLKHIERTR-LLLHLVDIEAV 249 (335)
T ss_pred -----------------------EEeCCCcEEEEEeCCCccCCCCcc------ccHHHHHHHHhhhcC-EEEEEEcCCCC
Confidence 112233568999999998654322 112223344666666 77778877632
Q ss_pred --cch-HHHHHHHHHhCC--CCCcEEEEeeCCCcc
Q 003415 217 --WCS-SLWLDAIREIDP--TFRRTVIVVSKFDNR 246 (822)
Q Consensus 217 --~~n-q~il~lar~~Dp--~g~RTIgViTK~D~~ 246 (822)
+.+ ..|...++.+++ ...+.|.|+||+|+.
T Consensus 250 ~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 250 DPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred CCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 222 235556666666 357899999999984
No 26
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.85 E-value=2.2e-08 Score=113.32 Aligned_cols=121 Identities=16% Similarity=0.221 Sum_probs=74.7
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHH
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIK 137 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~ 137 (822)
++.|++||.+|||||||||+|++.+.- ++. -..||.|+.-.+.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~-vs~~p~TT~~p~~Giv~----------------------------------- 202 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPK-VADYPFTTLVPNLGVVR----------------------------------- 202 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCccc-ccCCCCCccCcEEEEEE-----------------------------------
Confidence 458999999999999999999997632 221 1245555332221
Q ss_pred HHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCC---
Q 003415 138 SRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSS--- 214 (822)
Q Consensus 138 ~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~--- 214 (822)
..+...++|+||||++..+..+ ...-..++ ++++..+ +||.|++++
T Consensus 203 ------------------------~~~~~~i~~vDtPGi~~~a~~~-----~~Lg~~~l-~~i~rad-vlL~VVD~s~~~ 251 (390)
T PRK12298 203 ------------------------VDDERSFVVADIPGLIEGASEG-----AGLGIRFL-KHLERCR-VLLHLIDIAPID 251 (390)
T ss_pred ------------------------eCCCcEEEEEeCCCccccccch-----hhHHHHHH-HHHHhCC-EEEEEeccCccc
Confidence 1122358999999998754321 12233443 4676666 666677765
Q ss_pred -cccch--HHHHHHHHHhCC--CCCcEEEEeeCCCcc
Q 003415 215 -VEWCS--SLWLDAIREIDP--TFRRTVIVVSKFDNR 246 (822)
Q Consensus 215 -~D~~n--q~il~lar~~Dp--~g~RTIgViTK~D~~ 246 (822)
.+... ..+++....+.+ ...+.|.|+||+|+.
T Consensus 252 ~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 252 GSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred ccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 22222 234454555544 257889999999984
No 27
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.83 E-value=6.1e-08 Score=109.31 Aligned_cols=127 Identities=24% Similarity=0.202 Sum_probs=85.7
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcccccccc-cccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVE-MGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g-~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
+.-+|+|||.+|+|||||+|+|+|..=-.++.- ..||
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTR------------------------------------------ 214 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTR------------------------------------------ 214 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccc------------------------------------------
Confidence 467999999999999999999999863222211 1122
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE 216 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D 216 (822)
|.|...++. +.-.++||||-|+-....-..+.+--..++. ..-|...+ ++|+|++|...
T Consensus 215 -----------------D~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt--~~aI~~a~-vvllviDa~~~ 273 (444)
T COG1160 215 -----------------DSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART--LKAIERAD-VVLLVIDATEG 273 (444)
T ss_pred -----------------cceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh--HhHHhhcC-EEEEEEECCCC
Confidence 223333442 2357899999999876543221111111111 22334444 99999999999
Q ss_pred cchHHHHHHHHHhCCCCCcEEEEeeCCCcccc
Q 003415 217 WCSSLWLDAIREIDPTFRRTVIVVSKFDNRLK 248 (822)
Q Consensus 217 ~~nq~il~lar~~Dp~g~RTIgViTK~D~~~~ 248 (822)
+..|+ ++++..+.-.|.-.|.|+||||++.+
T Consensus 274 ~~~qD-~~ia~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 274 ISEQD-LRIAGLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred chHHH-HHHHHHHHHcCCCeEEEEEccccCCc
Confidence 99998 67777777779999999999999754
No 28
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.82 E-value=1.8e-08 Score=97.18 Aligned_cols=76 Identities=13% Similarity=0.160 Sum_probs=50.9
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCc--EEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHR--ILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~s--IILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D 244 (822)
+++++||||+..... +....+....++..|+...+. .++.|++........ ..++.+.++..+...+.|+||+|
T Consensus 46 ~~~~~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~l~~~~~~vi~v~nK~D 121 (170)
T cd01876 46 KFRLVDLPGYGYAKV---SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEI-DLEMLDWLEELGIPFLVVLTKAD 121 (170)
T ss_pred eEEEecCCCcccccc---CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHh-HHHHHHHHHHcCCCEEEEEEchh
Confidence 899999999876533 234456677888899987654 355666665443222 23344444445678999999999
Q ss_pred cc
Q 003415 245 NR 246 (822)
Q Consensus 245 ~~ 246 (822)
+.
T Consensus 122 ~~ 123 (170)
T cd01876 122 KL 123 (170)
T ss_pred cC
Confidence 95
No 29
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.80 E-value=4e-08 Score=96.33 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=24.1
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
|.|+++|++++||||++++|++..+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~ 26 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE 26 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc
Confidence 78999999999999999999998764
No 30
>PRK04213 GTP-binding protein; Provisional
Probab=98.78 E-value=5e-08 Score=99.26 Aligned_cols=125 Identities=21% Similarity=0.276 Sum_probs=73.7
Q ss_pred CCCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHH
Q 003415 56 KLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADI 135 (822)
Q Consensus 56 ~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~ 135 (822)
.-..+.|+++|..++|||||+++|+|..++......+|+.+
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~--------------------------------------- 46 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKP--------------------------------------- 46 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCc---------------------------------------
Confidence 34568999999999999999999999776421100011110
Q ss_pred HHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCC-CC--cEEEEEec
Q 003415 136 IKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASP-PH--RILVFLQQ 212 (822)
Q Consensus 136 I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~-~~--sIILaVv~ 212 (822)
..+.+ .+++|+||||+..... -+....+.++.+...|+.+ .+ .+++.|++
T Consensus 47 --------------------~~~~~-----~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d 99 (201)
T PRK04213 47 --------------------NHYDW-----GDFILTDLPGFGFMSG--VPKEVQEKIKDEIVRYIEDNADRILAAVLVVD 99 (201)
T ss_pred --------------------eEEee-----cceEEEeCCccccccc--cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEe
Confidence 11111 2689999999744321 1222346677887888753 22 25666777
Q ss_pred CCcc------cchH----HHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 213 SSVE------WCSS----LWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 213 A~~D------~~nq----~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
++.. |... ....+.+.+...+.+.|+|+||.|+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 143 (201)
T PRK04213 100 GKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKI 143 (201)
T ss_pred CccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECcccc
Confidence 6532 1110 11222222222468899999999984
No 31
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.78 E-value=1.5e-08 Score=107.57 Aligned_cols=124 Identities=23% Similarity=0.245 Sum_probs=81.1
Q ss_pred CCCEEE-EEcCCCCchhhHHHHHhCCccccc-ccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHH
Q 003415 58 PIPEIV-ALGGQSDGKSSLLEALLGFRFNVR-EVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADI 135 (822)
Q Consensus 58 ~lPqIV-VVG~QSsGKSSlLEAL~G~~fp~r-~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~ 135 (822)
.-|-.| ++|..++||||+||||.+-..-++ ..+.||+-+++....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~-------------------------------- 84 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSY-------------------------------- 84 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhc--------------------------------
Confidence 345555 999999999999999995433223 2466776442211000
Q ss_pred HHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc
Q 003415 136 IKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV 215 (822)
Q Consensus 136 I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~ 215 (822)
+..+|+|.||||+..... -....+.++..|+...+ ++|+++++.+
T Consensus 85 ----------------------------~~~~l~lwDtPG~gdg~~------~D~~~r~~~~d~l~~~D-LvL~l~~~~d 129 (296)
T COG3596 85 ----------------------------DGENLVLWDTPGLGDGKD------KDAEHRQLYRDYLPKLD-LVLWLIKADD 129 (296)
T ss_pred ----------------------------cccceEEecCCCcccchh------hhHHHHHHHHHHhhhcc-EEEEeccCCC
Confidence 236899999999965432 22356888899998887 9999998873
Q ss_pred ccchHHHHHHHHHhC-CC-CCcEEEEeeCCCccccc
Q 003415 216 EWCSSLWLDAIREID-PT-FRRTVIVVSKFDNRLKE 249 (822)
Q Consensus 216 D~~nq~il~lar~~D-p~-g~RTIgViTK~D~~~~~ 249 (822)
-+-+.-..+++.+- +. ..|+|.|+|..|+..+.
T Consensus 130 -raL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~ 164 (296)
T COG3596 130 -RALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPG 164 (296)
T ss_pred -ccccCCHHHHHHHHHhccCceeEEEEehhhhhccc
Confidence 22222122233221 11 28999999999997664
No 32
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.77 E-value=8e-08 Score=108.63 Aligned_cols=143 Identities=22% Similarity=0.253 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHhcCCC-CCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccc
Q 003415 37 ASRFEAYNRLQAAAVAFGEK-LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQ 115 (822)
Q Consensus 37 ~~Lld~id~Lr~~g~~~~~~-i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~ 115 (822)
..+.+.+++|...+-. +.. -+--.||++|.+|+|||||||||+|..- .++|-.|-
T Consensus 195 ~~~~~~l~~ll~~~~~-g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~-----AIVTdI~G------------------ 250 (454)
T COG0486 195 EELIAELDELLATAKQ-GKILREGLKVVIIGRPNVGKSSLLNALLGRDR-----AIVTDIAG------------------ 250 (454)
T ss_pred HHHHHHHHHHHHhhhh-hhhhhcCceEEEECCCCCcHHHHHHHHhcCCc-----eEecCCCC------------------
Confidence 3455555665554431 222 2334899999999999999999999874 34554441
Q ss_pred cCCccccCCcccchhhHHHHHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHH-HH
Q 003415 116 EEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEI-LS 194 (822)
Q Consensus 116 ~~~~~ef~~~~~~~~~l~~~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v-~~ 194 (822)
++ +++|+ -.+.| +...+.||||-|+..+ ++.++.+ -+
T Consensus 251 -----------TT----RDvie------------------e~i~i---~G~pv~l~DTAGiRet------~d~VE~iGIe 288 (454)
T COG0486 251 -----------TT----RDVIE------------------EDINL---NGIPVRLVDTAGIRET------DDVVERIGIE 288 (454)
T ss_pred -----------Cc----cceEE------------------EEEEE---CCEEEEEEecCCcccC------ccHHHHHHHH
Confidence 00 11111 12222 2367899999999643 3455543 12
Q ss_pred HHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCcccc
Q 003415 195 MVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLK 248 (822)
Q Consensus 195 LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~~ 248 (822)
-.++-+++.+ +||+|++++..+...+- .+.. .-|.+++++.|+||.|+..+
T Consensus 289 Rs~~~i~~AD-lvL~v~D~~~~~~~~d~-~~~~-~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 289 RAKKAIEEAD-LVLFVLDASQPLDKEDL-ALIE-LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred HHHHHHHhCC-EEEEEEeCCCCCchhhH-HHHH-hcccCCCEEEEEechhcccc
Confidence 3456677776 99999999976555542 2222 33668999999999999644
No 33
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.77 E-value=5.2e-08 Score=112.95 Aligned_cols=121 Identities=21% Similarity=0.325 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHH
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADI 135 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~ 135 (822)
-.+|.|+|||+.++|||||+++|+|..+...+. ..+||
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~----------------------------------------- 74 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTR----------------------------------------- 74 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCE-----------------------------------------
Confidence 467999999999999999999999876431110 00111
Q ss_pred HHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc
Q 003415 136 IKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV 215 (822)
Q Consensus 136 I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~ 215 (822)
+.+...++..+ ..+.|+||||+.... ....+.+...+..|++..+ +||+|++++.
T Consensus 75 ------------------d~~~~~~~~~~-~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~aD-~il~VvD~~~ 129 (472)
T PRK03003 75 ------------------DRVSYDAEWNG-RRFTVVDTGGWEPDA-----KGLQASVAEQAEVAMRTAD-AVLFVVDATV 129 (472)
T ss_pred ------------------eeEEEEEEECC-cEEEEEeCCCcCCcc-----hhHHHHHHHHHHHHHHhCC-EEEEEEECCC
Confidence 11122222211 348899999985321 2344567778888999887 7777777775
Q ss_pred ccch--HHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 216 EWCS--SLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 216 D~~n--q~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
.... ..+.++++ ..+.+.|+|+||+|+.
T Consensus 130 ~~s~~~~~i~~~l~---~~~~piilV~NK~Dl~ 159 (472)
T PRK03003 130 GATATDEAVARVLR---RSGKPVILAANKVDDE 159 (472)
T ss_pred CCCHHHHHHHHHHH---HcCCCEEEEEECccCC
Confidence 4433 23444444 4578999999999984
No 34
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.76 E-value=1e-07 Score=92.64 Aligned_cols=77 Identities=21% Similarity=0.155 Sum_probs=45.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHH-HHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEIL-SMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~-~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D 244 (822)
.++++|||||+...... ....+... .-...++...+ +++.|++++.....+. +.+.+.+...+.+.|.|+||+|
T Consensus 50 ~~~~iiDtpG~~~~~~~---~~~~e~~~~~~~~~~~~~~d-~vi~v~d~~~~~~~~~-~~~~~~~~~~~~~~iiv~nK~D 124 (174)
T cd01895 50 KKYTLIDTAGIRRKGKV---EEGIEKYSVLRTLKAIERAD-VVLLVIDATEGITEQD-LRIAGLILEEGKALVIVVNKWD 124 (174)
T ss_pred eeEEEEECCCCccccch---hccHHHHHHHHHHHHHhhcC-eEEEEEeCCCCcchhH-HHHHHHHHhcCCCEEEEEeccc
Confidence 45789999998754211 11111111 11234555666 6666667776555433 3444444445689999999999
Q ss_pred ccc
Q 003415 245 NRL 247 (822)
Q Consensus 245 ~~~ 247 (822)
+..
T Consensus 125 l~~ 127 (174)
T cd01895 125 LVE 127 (174)
T ss_pred cCC
Confidence 853
No 35
>PRK15494 era GTPase Era; Provisional
Probab=98.75 E-value=2.6e-07 Score=102.78 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=43.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~RTIgViTK~ 243 (822)
.++.|+||||+..... .....+...+..++...+ +||+|+++...+...+ +++.++. .+...|.|+||.
T Consensus 100 ~qi~~~DTpG~~~~~~-----~l~~~~~r~~~~~l~~aD-vil~VvD~~~s~~~~~~~il~~l~~---~~~p~IlViNKi 170 (339)
T PRK15494 100 TQVILYDTPGIFEPKG-----SLEKAMVRCAWSSLHSAD-LVLLIIDSLKSFDDITHNILDKLRS---LNIVPIFLLNKI 170 (339)
T ss_pred eEEEEEECCCcCCCcc-----cHHHHHHHHHHHHhhhCC-EEEEEEECCCCCCHHHHHHHHHHHh---cCCCEEEEEEhh
Confidence 3689999999864321 122223333445677777 5555677765554432 4444443 346778999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 171 Dl~ 173 (339)
T PRK15494 171 DIE 173 (339)
T ss_pred cCc
Confidence 984
No 36
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.73 E-value=7.4e-08 Score=94.43 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=42.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc--c-ch-HHHHHHHHHhCC--CCCcEEEE
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE--W-CS-SLWLDAIREIDP--TFRRTVIV 239 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D--~-~n-q~il~lar~~Dp--~g~RTIgV 239 (822)
.++.|+||||+....... .. ..... .++++..+ +++.|++++.. . .+ ..+.+..+...+ .+.+.|.|
T Consensus 48 ~~~~l~DtpG~~~~~~~~--~~---~~~~~-~~~~~~~d-~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv 120 (170)
T cd01898 48 RSFVVADIPGLIEGASEG--KG---LGHRF-LRHIERTR-LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVV 120 (170)
T ss_pred CeEEEEecCcccCccccc--CC---chHHH-HHHHHhCC-EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEE
Confidence 479999999986432111 11 11222 23344455 67777777643 1 11 224444454443 36788999
Q ss_pred eeCCCccc
Q 003415 240 VSKFDNRL 247 (822)
Q Consensus 240 iTK~D~~~ 247 (822)
+||.|+..
T Consensus 121 ~NK~Dl~~ 128 (170)
T cd01898 121 LNKIDLLD 128 (170)
T ss_pred EEchhcCC
Confidence 99999853
No 37
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.73 E-value=6.5e-08 Score=110.23 Aligned_cols=71 Identities=14% Similarity=0.243 Sum_probs=51.5
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCcEEEEeeCCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~RTIgViTK~D 244 (822)
.++||||||+... .....+.+..++..+++..+ +||+|+++...+...+ +.+.+++ .+.+.|.|+||+|
T Consensus 48 ~~~liDTpG~~~~-----~~~~~~~~~~~~~~~~~~ad-~vl~vvD~~~~~~~~d~~i~~~l~~---~~~piilVvNK~D 118 (429)
T TIGR03594 48 EFILIDTGGIEED-----DDGLDKQIREQAEIAIEEAD-VILFVVDGREGLTPEDEEIAKWLRK---SGKPVILVANKID 118 (429)
T ss_pred EEEEEECCCCCCc-----chhHHHHHHHHHHHHHhhCC-EEEEEEeCCCCCCHHHHHHHHHHHH---hCCCEEEEEECcc
Confidence 5899999998532 12345677888899999887 7777778876555443 4444444 4688999999999
Q ss_pred cc
Q 003415 245 NR 246 (822)
Q Consensus 245 ~~ 246 (822)
+.
T Consensus 119 ~~ 120 (429)
T TIGR03594 119 GK 120 (429)
T ss_pred CC
Confidence 85
No 38
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.71 E-value=1e-07 Score=103.47 Aligned_cols=125 Identities=24% Similarity=0.234 Sum_probs=80.8
Q ss_pred CCCCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHH
Q 003415 55 EKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIAD 134 (822)
Q Consensus 55 ~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~ 134 (822)
-+.++|+|||+|.+|+|||||+.+|++-+-- ..+-.-|
T Consensus 164 Idp~~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFT----------------------------------------- 201 (346)
T COG1084 164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFT----------------------------------------- 201 (346)
T ss_pred CCCCCCeEEEecCCCCcHHHHHHHHhcCCCc-cCCCCcc-----------------------------------------
Confidence 4678999999999999999999999987632 1111111
Q ss_pred HHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCC
Q 003415 135 IIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSS 214 (822)
Q Consensus 135 ~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~ 214 (822)
.+.|.|=--.-.....-+||||||-..+ .+....|+...-..|++=+.+||+++|.+
T Consensus 202 ------------------TK~i~vGhfe~~~~R~QvIDTPGlLDRP-----l~ErN~IE~qAi~AL~hl~~~IlF~~D~S 258 (346)
T COG1084 202 ------------------TKGIHVGHFERGYLRIQVIDTPGLLDRP-----LEERNEIERQAILALRHLAGVILFLFDPS 258 (346)
T ss_pred ------------------ccceeEeeeecCCceEEEecCCcccCCC-----hHHhcHHHHHHHHHHHHhcCeEEEEEcCc
Confidence 0111111111122356789999997654 34445566666666677788999999876
Q ss_pred cc----cchHHHHHHHHHhCCCC-CcEEEEeeCCCcc
Q 003415 215 VE----WCSSLWLDAIREIDPTF-RRTVIVVSKFDNR 246 (822)
Q Consensus 215 ~D----~~nq~il~lar~~Dp~g-~RTIgViTK~D~~ 246 (822)
.. ++.| ..|.+++-+.. .++|.|+||.|..
T Consensus 259 e~cgy~lE~Q--~~L~~eIk~~f~~p~v~V~nK~D~~ 293 (346)
T COG1084 259 ETCGYSLEEQ--ISLLEEIKELFKAPIVVVINKIDIA 293 (346)
T ss_pred cccCCCHHHH--HHHHHHHHHhcCCCeEEEEeccccc
Confidence 42 3334 34445554444 4799999999985
No 39
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.71 E-value=1e-07 Score=90.08 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=47.9
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D 244 (822)
..+++|+|+||+....... .....+...++...+ +++.|+++.......... +.......+.+.|+|+||.|
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~------~~~~~~~~~~~~~~d-~il~v~~~~~~~~~~~~~-~~~~~~~~~~~~ivv~nK~D 115 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLG------REREELARRVLERAD-LILFVVDADLRADEEEEK-LLELLRERGKPVLLVLNKID 115 (163)
T ss_pred CCcEEEEECCCCCccccch------hhHHHHHHHHHHhCC-EEEEEEeCCCCCCHHHHH-HHHHHHhcCCeEEEEEEccc
Confidence 4789999999987643211 111345567777777 555566666444443322 33333345788999999999
Q ss_pred cccc
Q 003415 245 NRLK 248 (822)
Q Consensus 245 ~~~~ 248 (822)
+...
T Consensus 116 ~~~~ 119 (163)
T cd00880 116 LLPE 119 (163)
T ss_pred cCCh
Confidence 9643
No 40
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.70 E-value=1.1e-07 Score=92.06 Aligned_cols=65 Identities=17% Similarity=0.273 Sum_probs=42.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH--HHHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS--LWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq--~il~lar~~Dp~g~RTIgViTK~ 243 (822)
..++|+||||.- .....+..|+...+ .+++|++++.++..+ +.+.+++... ..+.|.|+||.
T Consensus 51 ~~~~~~DtpG~~-------------~~~~~~~~~~~~ad-~ii~V~d~~~~~~~~~~~~~~~~~~~~--~~~~ilv~NK~ 114 (164)
T cd04171 51 KRLGFIDVPGHE-------------KFIKNMLAGAGGID-LVLLVVAADEGIMPQTREHLEILELLG--IKRGLVVLTKA 114 (164)
T ss_pred cEEEEEECCChH-------------HHHHHHHhhhhcCC-EEEEEEECCCCccHhHHHHHHHHHHhC--CCcEEEEEECc
Confidence 478999999951 22344456777777 666677777655433 2334444332 24899999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 115 Dl~ 117 (164)
T cd04171 115 DLV 117 (164)
T ss_pred ccc
Confidence 984
No 41
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.70 E-value=1.9e-07 Score=89.57 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=44.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
..++++||||+..... .....-...+..++.+.+ ++++|+++++...... .++... ..+.+.|.|+||.|+
T Consensus 49 ~~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~-~~~~~~--~~~~~vi~v~nK~D~ 119 (157)
T cd04164 49 IPVRLIDTAGIRETED-----EIEKIGIERAREAIEEAD-LVLFVIDASRGLDEED-LEILEL--PADKPIIVVLNKSDL 119 (157)
T ss_pred EEEEEEECCCcCCCcc-----hHHHHHHHHHHHHHhhCC-EEEEEEECCCCCCHHH-HHHHHh--hcCCCEEEEEEchhc
Confidence 4689999999865421 111111233445666666 6666777775443333 333333 346899999999999
Q ss_pred cc
Q 003415 246 RL 247 (822)
Q Consensus 246 ~~ 247 (822)
..
T Consensus 120 ~~ 121 (157)
T cd04164 120 LP 121 (157)
T ss_pred CC
Confidence 53
No 42
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.69 E-value=1.2e-07 Score=108.29 Aligned_cols=124 Identities=24% Similarity=0.180 Sum_probs=76.8
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
+.+.|+|+|+.++|||||+++|+|......+. ...||-+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~---------------------------------------- 211 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDS---------------------------------------- 211 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEE----------------------------------------
Confidence 56799999999999999999999875321110 0111111
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHH-HHHHHhcCCCCcEEEEEecCCc
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEIL-SMVKSLASPPHRILVFLQQSSV 215 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~-~LV~~Yik~~~sIILaVv~A~~ 215 (822)
+...+.. +...++||||||+....... +..+... .-..++++..+ ++|+|+++..
T Consensus 212 -------------------~~~~~~~-~~~~~~lvDT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad-~~ilViD~~~ 267 (435)
T PRK00093 212 -------------------IDTPFER-DGQKYTLIDTAGIRRKGKVT---EGVEKYSVIRTLKAIERAD-VVLLVIDATE 267 (435)
T ss_pred -------------------EEEEEEE-CCeeEEEEECCCCCCCcchh---hHHHHHHHHHHHHHHHHCC-EEEEEEeCCC
Confidence 1111111 22467899999986543211 1111111 11235677676 7777888887
Q ss_pred ccchHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 216 EWCSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 216 D~~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
....++ .++++.+...+.+.|.|+||+|+.
T Consensus 268 ~~~~~~-~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 268 GITEQD-LRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred CCCHHH-HHHHHHHHHcCCcEEEEEECccCC
Confidence 777665 345555555678999999999985
No 43
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.69 E-value=2.3e-07 Score=88.43 Aligned_cols=67 Identities=22% Similarity=0.282 Sum_probs=43.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
.+++|+|+||.. ....+...++++.+. +++|++++..-.. ..++............+++|+||
T Consensus 49 ~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~-ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 114 (159)
T cd00154 49 VKLQIWDTAGQE-------------RFRSITPSYYRGAHG-AILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNK 114 (159)
T ss_pred EEEEEEecCChH-------------HHHHHHHHHhcCCCE-EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEc
Confidence 467899999962 344577888888874 4555555432111 22444444444346899999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 115 ~D~~ 118 (159)
T cd00154 115 IDLE 118 (159)
T ss_pred cccc
Confidence 9995
No 44
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.69 E-value=1.3e-07 Score=107.94 Aligned_cols=118 Identities=18% Similarity=0.230 Sum_probs=71.9
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
-++.|++||.+|+||||||++|++.+.- .+. -..|+.|..-
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG------------------------------------- 198 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLG------------------------------------- 198 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEE-------------------------------------
Confidence 3569999999999999999999986521 111 1123333111
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHh---cCCCCcEEEEEecC
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSL---ASPPHRILVFLQQS 213 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Y---ik~~~sIILaVv~A 213 (822)
.|..++...++|+||||++..+..+ ..|...| ++..+ +++.|+|+
T Consensus 199 ----------------------~v~~~~~~~~~laD~PGliega~~~---------~gLg~~fLrhier~~-llI~VID~ 246 (424)
T PRK12297 199 ----------------------VVETDDGRSFVMADIPGLIEGASEG---------VGLGHQFLRHIERTR-VIVHVIDM 246 (424)
T ss_pred ----------------------EEEEeCCceEEEEECCCCccccccc---------chHHHHHHHHHhhCC-EEEEEEeC
Confidence 0111223468999999998644321 1233333 44455 77777777
Q ss_pred Cc----ccch--HHHHHHHHHhCC--CCCcEEEEeeCCCc
Q 003415 214 SV----EWCS--SLWLDAIREIDP--TFRRTVIVVSKFDN 245 (822)
Q Consensus 214 ~~----D~~n--q~il~lar~~Dp--~g~RTIgViTK~D~ 245 (822)
+. +... ..|.+..+.+++ ...+.|+|+||+|+
T Consensus 247 s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 247 SGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred CccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 52 2211 234555666665 36889999999997
No 45
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.69 E-value=8.3e-08 Score=92.20 Aligned_cols=72 Identities=18% Similarity=0.273 Sum_probs=45.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch--HHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS--SLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n--q~il~lar~~Dp~g~RTIgViTK~ 243 (822)
..+.++||||+..... ...+.+......++...+ ++++|+++...+.. ..+.+++++ .+.+.|+|+||+
T Consensus 45 ~~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~d-~ii~v~d~~~~~~~~~~~~~~~~~~---~~~piiiv~nK~ 115 (157)
T cd01894 45 REFILIDTGGIEPDDE-----GISKEIREQAELAIEEAD-VILFVVDGREGLTPADEEIAKYLRK---SKKPVILVVNKV 115 (157)
T ss_pred eEEEEEECCCCCCchh-----HHHHHHHHHHHHHHHhCC-EEEEEEeccccCCccHHHHHHHHHh---cCCCEEEEEECc
Confidence 4689999999864321 223334455566677766 66666666543332 233444444 358999999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 116 D~~ 118 (157)
T cd01894 116 DNI 118 (157)
T ss_pred ccC
Confidence 995
No 46
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.68 E-value=1.3e-07 Score=104.87 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
-++.|++||.+|+||||||++|++-+.. .+. ...|+.|+.-.+
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~-va~y~fTT~~p~ig~v----------------------------------- 199 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLVPNLGVV----------------------------------- 199 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccCCEEEEE-----------------------------------
Confidence 4678999999999999999999986522 111 112443321111
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE 216 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D 216 (822)
+..+...++|+||||++..+..+ ..+.....++++..+ ++|.|+|++..
T Consensus 200 ------------------------~~~~~~~~~i~D~PGli~~a~~~------~gLg~~flrhierad-~ll~VvD~s~~ 248 (329)
T TIGR02729 200 ------------------------RVDDGRSFVIADIPGLIEGASEG------AGLGHRFLKHIERTR-VLLHLIDISPL 248 (329)
T ss_pred ------------------------EeCCceEEEEEeCCCcccCCccc------ccHHHHHHHHHHhhC-EEEEEEcCccc
Confidence 11122468999999998654321 112223334455555 77778887642
Q ss_pred ----cc-h-HHHHHHHHHhCC--CCCcEEEEeeCCCcc
Q 003415 217 ----WC-S-SLWLDAIREIDP--TFRRTVIVVSKFDNR 246 (822)
Q Consensus 217 ----~~-n-q~il~lar~~Dp--~g~RTIgViTK~D~~ 246 (822)
.. + ..+.+....+++ ...+.|.|+||+|+.
T Consensus 249 ~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~ 286 (329)
T TIGR02729 249 DGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL 286 (329)
T ss_pred cccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence 11 1 124444445544 357899999999984
No 47
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.67 E-value=1.8e-07 Score=100.40 Aligned_cols=123 Identities=20% Similarity=0.258 Sum_probs=77.6
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccccccccc-ccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHH
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFNVREVEM-GTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKS 138 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~-cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~ 138 (822)
-+|+|||.+|+|||+|.|.+.|.++.+++.-+ .||+ .
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~-----------------~------------------------- 110 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRH-----------------R------------------------- 110 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCccccccccccceee-----------------e-------------------------
Confidence 38999999999999999999999986553211 1111 1
Q ss_pred HHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCC--cc
Q 003415 139 RTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSS--VE 216 (822)
Q Consensus 139 a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~--~D 216 (822)
.+-|.....-+|+|+||||++......+...+ ..+..=....+.+.+ ++++|+|+. ..
T Consensus 111 ------------------ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~-~s~lq~~~~a~q~AD-~vvVv~Das~tr~ 170 (379)
T KOG1423|consen 111 ------------------ILGIITSGETQLVFYDTPGLVSKKMHRRHHLM-MSVLQNPRDAAQNAD-CVVVVVDASATRT 170 (379)
T ss_pred ------------------eeEEEecCceEEEEecCCcccccchhhhHHHH-HHhhhCHHHHHhhCC-EEEEEEeccCCcC
Confidence 01111223478999999999976432211111 111112344556666 566666666 33
Q ss_pred cchHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 217 WCSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 217 ~~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
.-+-.+|++.+++- ....|.|.+|.|+.
T Consensus 171 ~l~p~vl~~l~~ys--~ips~lvmnkid~~ 198 (379)
T KOG1423|consen 171 PLHPRVLHMLEEYS--KIPSILVMNKIDKL 198 (379)
T ss_pred ccChHHHHHHHHHh--cCCceeeccchhcc
Confidence 33445788888874 47889999999984
No 48
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.66 E-value=4.2e-07 Score=88.31 Aligned_cols=66 Identities=21% Similarity=0.304 Sum_probs=42.4
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc--cchH-HHHHHHHHhCCCCCcEEEEeeCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE--WCSS-LWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D--~~nq-~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.+.|+|+||- .....++..|++..+ +++.|.+.+.. +... .++...+..-+.+.+.|.|+||.
T Consensus 50 ~l~~~D~~G~-------------~~~~~~~~~~~~~~~-~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~ 115 (161)
T cd01861 50 RLQLWDTAGQ-------------ERFRSLIPSYIRDSS-VAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKT 115 (161)
T ss_pred EEEEEECCCc-------------HHHHHHHHHHhccCC-EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEECh
Confidence 5889999993 234567888998887 45555665532 2221 23333333223358899999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 116 D~~ 118 (161)
T cd01861 116 DLS 118 (161)
T ss_pred hcc
Confidence 994
No 49
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.65 E-value=2e-07 Score=106.64 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=50.4
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH--HHHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS--LWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq--~il~lar~~Dp~g~RTIgViTK~ 243 (822)
..+.||||||+.... ......++.++..++...+ +||+|+++....... .+.+++++. +.+.|.|+||+
T Consensus 49 ~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~ad-~il~vvd~~~~~~~~~~~~~~~l~~~---~~piilv~NK~ 119 (435)
T PRK00093 49 REFILIDTGGIEPDD-----DGFEKQIREQAELAIEEAD-VILFVVDGRAGLTPADEEIAKILRKS---NKPVILVVNKV 119 (435)
T ss_pred cEEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCC-EEEEEEECCCCCCHHHHHHHHHHHHc---CCcEEEEEECc
Confidence 568999999997521 1245567777888898888 666677776544332 344555544 68999999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|..
T Consensus 120 D~~ 122 (435)
T PRK00093 120 DGP 122 (435)
T ss_pred cCc
Confidence 963
No 50
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.65 E-value=2.1e-07 Score=109.31 Aligned_cols=127 Identities=20% Similarity=0.329 Sum_probs=79.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccccc-cccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHHH
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVRE-VEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKSR 139 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r~-~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~a 139 (822)
.|+|||..++||||++|+|+|......+ ...+|....++.
T Consensus 120 rIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~--------------------------------------- 160 (763)
T TIGR00993 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIE--------------------------------------- 160 (763)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEE---------------------------------------
Confidence 6999999999999999999998643222 112232211110
Q ss_pred HHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCC-CCcEEEEEecCC---c
Q 003415 140 TEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASP-PHRILVFLQQSS---V 215 (822)
Q Consensus 140 ~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~-~~sIILaVv~A~---~ 215 (822)
..+ +...++||||||+..... ++...+.+...+..||+. +-.++|+|...+ .
T Consensus 161 ------------------~~i---dG~~L~VIDTPGL~dt~~---dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~ 216 (763)
T TIGR00993 161 ------------------GLV---QGVKIRVIDTPGLKSSAS---DQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTR 216 (763)
T ss_pred ------------------EEE---CCceEEEEECCCCCcccc---chHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccc
Confidence 000 124689999999987532 222345666667778874 234777776543 3
Q ss_pred ccchHHHHHHHHHh-CC-CCCcEEEEeeCCCcccccc
Q 003415 216 EWCSSLWLDAIREI-DP-TFRRTVIVVSKFDNRLKEF 250 (822)
Q Consensus 216 D~~nq~il~lar~~-Dp-~g~RTIgViTK~D~~~~~~ 250 (822)
|.....+++...++ .+ -..++|+|+|+.|..++++
T Consensus 217 D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg 253 (763)
T TIGR00993 217 DSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDG 253 (763)
T ss_pred cHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCC
Confidence 33444456555443 22 2689999999999987654
No 51
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.64 E-value=3.1e-07 Score=105.60 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcccccccc-cccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVE-MGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g-~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
+-++||+||++++|||||+|+|++..+..++.- ..||-+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~---------------------------------------- 241 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDV---------------------------------------- 241 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEE----------------------------------------
Confidence 456999999999999999999999764322110 011110
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHH-HHHHHHhcCCCCcEEEEEecCCc
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEI-LSMVKSLASPPHRILVFLQQSSV 215 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v-~~LV~~Yik~~~sIILaVv~A~~ 215 (822)
+.-.+... ...+.|+||||+.... +..+.. -.....|+++.+ ++|+|++++.
T Consensus 242 -------------------~~~~i~~~-g~~v~l~DTaG~~~~~------~~ie~~gi~~~~~~~~~aD-~il~V~D~s~ 294 (442)
T TIGR00450 242 -------------------VEGDFELN-GILIKLLDTAGIREHA------DFVERLGIEKSFKAIKQAD-LVIYVLDASQ 294 (442)
T ss_pred -------------------EEEEEEEC-CEEEEEeeCCCcccch------hHHHHHHHHHHHHHHhhCC-EEEEEEECCC
Confidence 11111111 1346899999985321 122221 134567888777 6677777765
Q ss_pred ccchHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 216 EWCSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 216 D~~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
....... +...+...+.+.|.|+||.|+.
T Consensus 295 ~~s~~~~--~l~~~~~~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 295 PLTKDDF--LIIDLNKSKKPFILVLNKIDLK 323 (442)
T ss_pred CCChhHH--HHHHHhhCCCCEEEEEECccCC
Confidence 4433332 2333333467899999999984
No 52
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.64 E-value=1e-07 Score=99.00 Aligned_cols=121 Identities=21% Similarity=0.287 Sum_probs=67.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccccccc--ccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHH
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVREV--EMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKS 138 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r~~--g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~ 138 (822)
.|+++|..+|||||++|+|+|......+. ..||+......
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~-------------------------------------- 43 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYS-------------------------------------- 43 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEE--------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceee--------------------------------------
Confidence 69999999999999999999987643321 12343221000
Q ss_pred HHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHH---HhcCCCCcEEEEEecCCc
Q 003415 139 RTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVK---SLASPPHRILVFLQQSSV 215 (822)
Q Consensus 139 a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~---~Yik~~~sIILaVv~A~~ 215 (822)
-.+ +...+++|||||+..... ...+..+.+.+ .....++ ++|+|++..
T Consensus 44 -------------------~~~---~g~~v~VIDTPGl~d~~~-----~~~~~~~~i~~~l~~~~~g~h-a~llVi~~~- 94 (212)
T PF04548_consen 44 -------------------GEV---DGRQVTVIDTPGLFDSDG-----SDEEIIREIKRCLSLCSPGPH-AFLLVIPLG- 94 (212)
T ss_dssp -------------------EEE---TTEEEEEEE--SSEETTE-----EHHHHHHHHHHHHHHTTT-ES-EEEEEEETT-
T ss_pred -------------------eee---cceEEEEEeCCCCCCCcc-----cHHHHHHHHHHHHHhccCCCe-EEEEEEecC-
Confidence 011 125789999999976532 12222233332 2233456 556667776
Q ss_pred ccchHH--HHHHHHH-hCC-CCCcEEEEeeCCCcccc
Q 003415 216 EWCSSL--WLDAIRE-IDP-TFRRTVIVVSKFDNRLK 248 (822)
Q Consensus 216 D~~nq~--il~lar~-~Dp-~g~RTIgViTK~D~~~~ 248 (822)
.+...+ +++...+ +.+ -.+.||.|+|..|...+
T Consensus 95 r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 95 RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED 131 (212)
T ss_dssp B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT
T ss_pred cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc
Confidence 665443 4544444 343 25789999999998544
No 53
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.63 E-value=1.7e-07 Score=108.62 Aligned_cols=124 Identities=19% Similarity=0.182 Sum_probs=76.8
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
..+.|+|||.+++|||||+++|+|..+...+. ...||-++.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~-------------------------------------- 251 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVD-------------------------------------- 251 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcce--------------------------------------
Confidence 56899999999999999999999976532211 111211110
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHH-HHhcCCCCcEEEEEecCCc
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMV-KSLASPPHRILVFLQQSSV 215 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV-~~Yik~~~sIILaVv~A~~ 215 (822)
..+.+. ...+.|+||||+...... ....+....+. ..+++..+ ++++|++++.
T Consensus 252 -------------------~~~~~~---~~~~~l~DTaG~~~~~~~---~~~~e~~~~~~~~~~i~~ad-~vilV~Da~~ 305 (472)
T PRK03003 252 -------------------SLIELG---GKTWRFVDTAGLRRRVKQ---ASGHEYYASLRTHAAIEAAE-VAVVLIDASE 305 (472)
T ss_pred -------------------EEEEEC---CEEEEEEECCCccccccc---cchHHHHHHHHHHHHHhcCC-EEEEEEeCCC
Confidence 011111 134579999998654321 11123333332 35677777 6667778876
Q ss_pred ccchHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 216 EWCSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 216 D~~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
....++ ++++..+...+...|.|+||+|+.
T Consensus 306 ~~s~~~-~~~~~~~~~~~~piIiV~NK~Dl~ 335 (472)
T PRK03003 306 PISEQD-QRVLSMVIEAGRALVLAFNKWDLV 335 (472)
T ss_pred CCCHHH-HHHHHHHHHcCCCEEEEEECcccC
Confidence 666655 344555545678999999999995
No 54
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.62 E-value=1.6e-07 Score=93.15 Aligned_cols=66 Identities=20% Similarity=0.122 Sum_probs=43.2
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH--HHHHHHHHhCCCCCcEEEEeeC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS--LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq--~il~lar~~Dp~g~RTIgViTK 242 (822)
...++||||||... ...+...|+...+.+| +|+++......+ ..+..++. .+...++|+||
T Consensus 61 ~~~~~liDtpG~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~~~~~~~~~~~~~~---~~~~i~iv~nK 123 (189)
T cd00881 61 DRRVNFIDTPGHED-------------FSSEVIRGLSVSDGAI-LVVDANEGVQPQTREHLRIARE---GGLPIIVAINK 123 (189)
T ss_pred CEEEEEEeCCCcHH-------------HHHHHHHHHHhcCEEE-EEEECCCCCcHHHHHHHHHHHH---CCCCeEEEEEC
Confidence 45799999999632 2345667777777555 466665433222 23334443 46899999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 124 ~D~~~ 128 (189)
T cd00881 124 IDRVG 128 (189)
T ss_pred CCCcc
Confidence 99964
No 55
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.61 E-value=7.1e-07 Score=88.21 Aligned_cols=115 Identities=18% Similarity=0.179 Sum_probs=70.3
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHHH
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKSR 139 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~a 139 (822)
-.|+|||++++||||||+++++..+++....+.+.. .
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~---~---------------------------------------- 41 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE---F---------------------------------------- 41 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcccee---E----------------------------------------
Confidence 589999999999999999999988764321100000 0
Q ss_pred HHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch
Q 003415 140 TEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS 219 (822)
Q Consensus 140 ~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n 219 (822)
....+.+.+ ..-.++|+|+||- +....+...|+++.+.+++ |.++++.-.-
T Consensus 42 --------------~~~~~~~~~-~~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~d~il~-v~d~~~~~s~ 92 (168)
T cd01866 42 --------------GARMITIDG-KQIKLQIWDTAGQ-------------ESFRSITRSYYRGAAGALL-VYDITRRETF 92 (168)
T ss_pred --------------EEEEEEECC-EEEEEEEEECCCc-------------HHHHHHHHHHhccCCEEEE-EEECCCHHHH
Confidence 000111111 1135789999993 2456677889988886544 6666532222
Q ss_pred HH---HHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 220 SL---WLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 220 q~---il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
+. |+...+.....+.+.|+|.||.|+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 93 NHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 22 3333333332357889999999985
No 56
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.61 E-value=2.7e-07 Score=105.24 Aligned_cols=75 Identities=19% Similarity=0.162 Sum_probs=48.8
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHH-HHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEI-LSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v-~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
.++||||||+....... +..+.. .....++++..+ ++|+|+++......++ .++++.+...+.+.|.|+||+|+
T Consensus 221 ~~~liDT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad-~~ilV~D~~~~~~~~~-~~~~~~~~~~~~~iiiv~NK~Dl 295 (429)
T TIGR03594 221 KYLLIDTAGIRRKGKVT---EGVEKYSVLRTLKAIERAD-VVLLVLDATEGITEQD-LRIAGLILEAGKALVIVVNKWDL 295 (429)
T ss_pred EEEEEECCCccccccch---hhHHHHHHHHHHHHHHhCC-EEEEEEECCCCccHHH-HHHHHHHHHcCCcEEEEEECccc
Confidence 68999999996543211 111111 122345777777 6677778876666665 34555555557899999999999
Q ss_pred c
Q 003415 246 R 246 (822)
Q Consensus 246 ~ 246 (822)
.
T Consensus 296 ~ 296 (429)
T TIGR03594 296 V 296 (429)
T ss_pred C
Confidence 5
No 57
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.61 E-value=2.1e-07 Score=113.02 Aligned_cols=122 Identities=25% Similarity=0.327 Sum_probs=79.8
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
.+|.|++||++++|||||+++|+|..+..++. ..+||-
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d----------------------------------------- 312 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRD----------------------------------------- 312 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEE-----------------------------------------
Confidence 46899999999999999999999876432210 011111
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE 216 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D 216 (822)
.+...++.. ..++.||||||+.... ......+.+.+..|++..+ +||+|++++..
T Consensus 313 ------------------~~~~~~~~~-~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~aD-~iL~VvDa~~~ 367 (712)
T PRK09518 313 ------------------RVSYDAEWA-GTDFKLVDTGGWEADV-----EGIDSAIASQAQIAVSLAD-AVVFVVDGQVG 367 (712)
T ss_pred ------------------EEEEEEEEC-CEEEEEEeCCCcCCCC-----ccHHHHHHHHHHHHHHhCC-EEEEEEECCCC
Confidence 111112211 2368899999986321 2344567777788898888 77778888765
Q ss_pred cchHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 217 WCSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 217 ~~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
+...+ ..+++.+...+...|.|+||.|+.
T Consensus 368 ~~~~d-~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 368 LTSTD-ERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred CCHHH-HHHHHHHHhcCCCEEEEEECcccc
Confidence 54433 223333445689999999999984
No 58
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.60 E-value=2.9e-07 Score=106.73 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
-++.|++||.+||||||||++|++.+
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~ak 183 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAK 183 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCC
Confidence 45799999999999999999999864
No 59
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.59 E-value=6.8e-07 Score=93.91 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=46.7
Q ss_pred cCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcC-CCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEee
Q 003415 163 AHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLAS-PPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 163 p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik-~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViT 241 (822)
.....++||||||.. ..++.++..... .++ ++++|+++..++..++ .+++..+...+.+.|+|+|
T Consensus 81 ~~~~~i~liDtpG~~------------~~~~~~~~~~~~~~~D-~~llVvda~~g~~~~d-~~~l~~l~~~~ip~ivvvN 146 (224)
T cd04165 81 KSSKLVTFIDLAGHE------------RYLKTTLFGLTGYAPD-YAMLVVAANAGIIGMT-KEHLGLALALNIPVFVVVT 146 (224)
T ss_pred eCCcEEEEEECCCcH------------HHHHHHHHhhcccCCC-EEEEEEECCCCCcHHH-HHHHHHHHHcCCCEEEEEE
Confidence 345679999999952 234555555443 344 6677888887776654 3344444445788999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|+|+.
T Consensus 147 K~D~~ 151 (224)
T cd04165 147 KIDLA 151 (224)
T ss_pred Ccccc
Confidence 99985
No 60
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.58 E-value=1e-06 Score=86.47 Aligned_cols=68 Identities=13% Similarity=0.211 Sum_probs=45.9
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+|+||- +....+...|+...+.+++ |+++++...- ..++..++...+.+...|.|.||
T Consensus 52 ~~l~i~D~~G~-------------~~~~~~~~~~~~~~d~~ll-v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 117 (165)
T cd01864 52 VKLQIWDTAGQ-------------ERFRTITQSYYRSANGAII-AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNK 117 (165)
T ss_pred EEEEEEECCCh-------------HHHHHHHHHHhccCCEEEE-EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 36899999993 2345677888888875555 5555543222 23566666655556789999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 118 ~Dl~~ 122 (165)
T cd01864 118 CDLEE 122 (165)
T ss_pred ccccc
Confidence 99853
No 61
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.58 E-value=9.4e-07 Score=86.48 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=44.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+|+||.. ....+...|+++.+.+|+ |.++.+...-+ .|+..+++..+.+...|+|.||
T Consensus 52 ~~~~l~D~~g~~-------------~~~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK 117 (165)
T cd01868 52 IKAQIWDTAGQE-------------RYRAITSAYYRGAVGALL-VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNK 117 (165)
T ss_pred EEEEEEeCCChH-------------HHHHHHHHHHCCCCEEEE-EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 368899999952 345667788887765544 45554222222 3556666666666889999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 118 ~Dl~ 121 (165)
T cd01868 118 SDLR 121 (165)
T ss_pred cccc
Confidence 9985
No 62
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.57 E-value=2.9e-07 Score=111.89 Aligned_cols=124 Identities=22% Similarity=0.221 Sum_probs=77.7
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
..|.|++||+.++|||||||+|+|..+...+. ...||-++.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~-------------------------------------- 490 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVD-------------------------------------- 490 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcce--------------------------------------
Confidence 56899999999999999999999986431110 111221100
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHH-HHHhcCCCCcEEEEEecCCc
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSM-VKSLASPPHRILVFLQQSSV 215 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~L-V~~Yik~~~sIILaVv~A~~ 215 (822)
..+.+. ..+++|+||||+...... ....+....+ ...+++..+ ++++|++++.
T Consensus 491 -------------------~~~~~~---~~~~~liDTaG~~~~~~~---~~~~e~~~~~r~~~~i~~ad-vvilViDat~ 544 (712)
T PRK09518 491 -------------------EIVEID---GEDWLFIDTAGIKRRQHK---LTGAEYYSSLRTQAAIERSE-LALFLFDASQ 544 (712)
T ss_pred -------------------eEEEEC---CCEEEEEECCCcccCccc---chhHHHHHHHHHHHHhhcCC-EEEEEEECCC
Confidence 011221 235789999998654321 1112222222 245677776 6667788887
Q ss_pred ccchHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 216 EWCSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 216 D~~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
....++ +++++.+...+...|.|+||+|+.
T Consensus 545 ~~s~~~-~~i~~~~~~~~~piIiV~NK~DL~ 574 (712)
T PRK09518 545 PISEQD-LKVMSMAVDAGRALVLVFNKWDLM 574 (712)
T ss_pred CCCHHH-HHHHHHHHHcCCCEEEEEEchhcC
Confidence 776665 345555555688999999999985
No 63
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.56 E-value=9.5e-07 Score=85.76 Aligned_cols=67 Identities=22% Similarity=0.197 Sum_probs=42.7
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH---HHHHHHHhCCCCCcEEEEeeCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL---WLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~---il~lar~~Dp~g~RTIgViTK~ 243 (822)
.+.|+|+||. .....+...|+++.+.+|+++ ++++..+.+. |+.........+...++|.||.
T Consensus 50 ~~~l~D~~G~-------------~~~~~~~~~~~~~~d~~ilv~-d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~ 115 (164)
T smart00175 50 KLQIWDTAGQ-------------ERFRSITSSYYRGAVGALLVY-DITNRESFENLKNWLKELREYADPNVVIMLVGNKS 115 (164)
T ss_pred EEEEEECCCh-------------HHHHHHHHHHhCCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEch
Confidence 5789999994 133456788888888555555 4443333222 3444333333468999999999
Q ss_pred Cccc
Q 003415 244 DNRL 247 (822)
Q Consensus 244 D~~~ 247 (822)
|+..
T Consensus 116 D~~~ 119 (164)
T smart00175 116 DLED 119 (164)
T ss_pred hccc
Confidence 9853
No 64
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.55 E-value=1.2e-06 Score=86.31 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=44.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+|+||.. ....+...|+++.+.+++ |.+.++.-.- ..|+...++..+...+.|+|.||
T Consensus 50 ~~~~l~Dt~g~~-------------~~~~~~~~~~~~~~~~l~-v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 115 (165)
T cd01865 50 VKLQIWDTAGQE-------------RYRTITTAYYRGAMGFIL-MYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNK 115 (165)
T ss_pred EEEEEEECCChH-------------HHHHHHHHHccCCcEEEE-EEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEEC
Confidence 357899999952 234566888888885555 4554422111 23555555555566789999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 116 ~Dl~~ 120 (165)
T cd01865 116 CDMED 120 (165)
T ss_pred cccCc
Confidence 99853
No 65
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.54 E-value=1e-06 Score=90.63 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=23.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|+|||++++||||||+.+++-.|+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~ 26 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFP 26 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Confidence 5899999999999999999998886
No 66
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.54 E-value=8.8e-07 Score=102.20 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=44.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHH-HHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEI-LSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v-~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D 244 (822)
..++|+||||+... .+..+.. -.....|+++.+ ++++|++++......+ ..+... ..+.+.|.|+||.|
T Consensus 263 ~~i~l~DT~G~~~~------~~~ie~~gi~~~~~~~~~aD-~il~VvD~s~~~s~~~-~~~l~~--~~~~piiiV~NK~D 332 (449)
T PRK05291 263 IPLRLIDTAGIRET------DDEVEKIGIERSREAIEEAD-LVLLVLDASEPLTEED-DEILEE--LKDKPVIVVLNKAD 332 (449)
T ss_pred eEEEEEeCCCCCCC------ccHHHHHHHHHHHHHHHhCC-EEEEEecCCCCCChhH-HHHHHh--cCCCCcEEEEEhhh
Confidence 35899999998531 1222221 122456788887 6777788775544333 333333 34678999999999
Q ss_pred cc
Q 003415 245 NR 246 (822)
Q Consensus 245 ~~ 246 (822)
+.
T Consensus 333 L~ 334 (449)
T PRK05291 333 LT 334 (449)
T ss_pred cc
Confidence 84
No 67
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.54 E-value=8.5e-07 Score=84.68 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=41.6
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH----HHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL----WLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~----il~lar~~Dp~g~RTIgViT 241 (822)
..+.++|+||.. ..+.+...|++..+. +++|++++....... +.++.+.....+.+.++|+|
T Consensus 44 ~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~-ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n 109 (159)
T cd04159 44 VTLKVWDLGGQP-------------RFRSMWERYCRGVNA-IVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGN 109 (159)
T ss_pred EEEEEEECCCCH-------------hHHHHHHHHHhcCCE-EEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEe
Confidence 468899999952 345667888888885 555666654322211 22222222224678999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 110 K~D~~ 114 (159)
T cd04159 110 KNDLP 114 (159)
T ss_pred Ccccc
Confidence 99984
No 68
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.53 E-value=5.1e-07 Score=89.51 Aligned_cols=66 Identities=20% Similarity=0.114 Sum_probs=42.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
..+.|+||||... ...++..|+...+.+ ++|++++.....+. +.........+...|.|+||.|+
T Consensus 67 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad~~-i~v~D~~~~~~~~~-~~~~~~~~~~~~~iiiv~NK~Dl 131 (179)
T cd01890 67 YLLNLIDTPGHVD-------------FSYEVSRSLAACEGA-LLLVDATQGVEAQT-LANFYLALENNLEIIPVINKIDL 131 (179)
T ss_pred EEEEEEECCCChh-------------hHHHHHHHHHhcCeE-EEEEECCCCccHhh-HHHHHHHHHcCCCEEEEEECCCC
Confidence 4688999999732 345667788888755 55666665443332 12222222346789999999998
Q ss_pred c
Q 003415 246 R 246 (822)
Q Consensus 246 ~ 246 (822)
.
T Consensus 132 ~ 132 (179)
T cd01890 132 P 132 (179)
T ss_pred C
Confidence 4
No 69
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.53 E-value=6.5e-07 Score=86.38 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=41.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcC--CCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLAS--PPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik--~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.++.|+||||+...... +. -..+...|+. +.+ ++++|+++...-... .+..++...+.+.|+|+||.
T Consensus 43 ~~~~liDtpG~~~~~~~--~~-----~~~~~~~~~~~~~~d-~vi~v~d~~~~~~~~---~~~~~~~~~~~~~iiv~NK~ 111 (158)
T cd01879 43 KEIEIVDLPGTYSLSPY--SE-----DEKVARDFLLGEKPD-LIVNVVDATNLERNL---YLTLQLLELGLPVVVALNMI 111 (158)
T ss_pred eEEEEEECCCccccCCC--Ch-----hHHHHHHHhcCCCCc-EEEEEeeCCcchhHH---HHHHHHHHcCCCEEEEEehh
Confidence 47899999998543221 11 1244566665 555 666666766422212 22323333468899999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 112 Dl~ 114 (158)
T cd01879 112 DEA 114 (158)
T ss_pred hhc
Confidence 985
No 70
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.52 E-value=1.4e-06 Score=84.64 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=42.4
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||. +....+...|+++.+.++++. ++++.-.-. .|++..+...+ ..+.|.|.||
T Consensus 51 ~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~~v~v~-d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK 115 (162)
T cd04106 51 VRLMLWDTAGQ-------------EEFDAITKAYYRGAQACILVF-STTDRESFEAIESWKEKVEAECG-DIPMVLVQTK 115 (162)
T ss_pred EEEEEeeCCch-------------HHHHHhHHHHhcCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 46889999993 234567788998888555554 444222112 23443443333 5789999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 116 ~Dl~~ 120 (162)
T cd04106 116 IDLLD 120 (162)
T ss_pred hhccc
Confidence 99953
No 71
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.50 E-value=1.1e-06 Score=86.28 Aligned_cols=66 Identities=23% Similarity=0.259 Sum_probs=42.7
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.+.++|+||.. ....+...|++..+.+|++ .+......- ..++..++.+...+.+.|.|.||.
T Consensus 57 ~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~ 122 (169)
T cd04114 57 KLQIWDTAGQE-------------RFRSITQSYYRSANALILT-YDITCEESFRCLPEWLREIEQYANNKVITILVGNKI 122 (169)
T ss_pred EEEEEECCCcH-------------HHHHHHHHHhcCCCEEEEE-EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECc
Confidence 57799999942 2345557788888855555 554432221 235555566555567789999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 123 D~~ 125 (169)
T cd04114 123 DLA 125 (169)
T ss_pred ccc
Confidence 984
No 72
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.50 E-value=1.5e-06 Score=84.38 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=23.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|+|||+.++||||++++|++..|+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~ 26 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFV 26 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 6899999999999999999998886
No 73
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.49 E-value=2e-06 Score=84.83 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=43.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||.. ....+...|+++.+.+|+ |.+++....- ..++..++...+.+...|.|.||
T Consensus 52 ~~l~l~D~~g~~-------------~~~~~~~~~~~~ad~~i~-v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK 117 (167)
T cd01867 52 IKLQIWDTAGQE-------------RFRTITTAYYRGAMGIIL-VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNK 117 (167)
T ss_pred EEEEEEeCCchH-------------HHHHHHHHHhCCCCEEEE-EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 367899999941 234566788888875555 4454432221 23455555555667889999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 118 ~Dl~ 121 (167)
T cd01867 118 CDME 121 (167)
T ss_pred cccc
Confidence 9995
No 74
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.49 E-value=1.7e-06 Score=84.87 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=23.1
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|+|+|+.++|||||+++|++..++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~ 26 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFS 26 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5899999999999999999988775
No 75
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.49 E-value=1.3e-06 Score=85.04 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=41.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH---HHHHHHH-hCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL---WLDAIRE-IDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~---il~lar~-~Dp~g~RTIgViT 241 (822)
-++.|+|+||.. ....+...+++..+ ++++|.+.+..-+-+. +++.++. .+..+...+.|.|
T Consensus 49 ~~~~l~D~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~n 114 (161)
T cd01863 49 VKLAIWDTAGQE-------------RFRTLTSSYYRGAQ-GVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGN 114 (161)
T ss_pred EEEEEEECCCch-------------hhhhhhHHHhCCCC-EEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 468899999942 22344567777777 5555555553222222 3333333 3455788899999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 115 K~D~~ 119 (161)
T cd01863 115 KIDKE 119 (161)
T ss_pred CCccc
Confidence 99995
No 76
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.49 E-value=1.4e-06 Score=84.58 Aligned_cols=67 Identities=15% Similarity=0.068 Sum_probs=41.8
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHh---CCCCCcEEEE
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREI---DPTFRRTVIV 239 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~---Dp~g~RTIgV 239 (822)
..+.|+||||.. ..+.+...|+++.+.+| .|++++....- ..++..+.+. ...+.+.|+|
T Consensus 45 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii-~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 110 (162)
T cd04157 45 LSFTAFDMSGQG-------------KYRGLWEHYYKNIQGII-FVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFF 110 (162)
T ss_pred EEEEEEECCCCH-------------hhHHHHHHHHccCCEEE-EEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEE
Confidence 467899999952 24556778898887555 55665532211 1123322221 2246889999
Q ss_pred eeCCCcc
Q 003415 240 VSKFDNR 246 (822)
Q Consensus 240 iTK~D~~ 246 (822)
+||.|+.
T Consensus 111 ~NK~Dl~ 117 (162)
T cd04157 111 ANKMDLP 117 (162)
T ss_pred EeCcccc
Confidence 9999984
No 77
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.49 E-value=8.5e-07 Score=90.15 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=44.5
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D 244 (822)
...+.|+||||.. ....++..|+.+.+.+ ++|+++......+. ..+.+.+...+.+.|.|+||.|
T Consensus 64 ~~~~~l~DtpG~~-------------~~~~~~~~~~~~~d~~-ilV~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~D 128 (194)
T cd01891 64 DTKINIVDTPGHA-------------DFGGEVERVLSMVDGV-LLLVDASEGPMPQT-RFVLKKALELGLKPIVVINKID 128 (194)
T ss_pred CEEEEEEECCCcH-------------HHHHHHHHHHHhcCEE-EEEEECCCCccHHH-HHHHHHHHHcCCCEEEEEECCC
Confidence 3578999999962 2455778899988854 45666665443322 2223333334788999999999
Q ss_pred cc
Q 003415 245 NR 246 (822)
Q Consensus 245 ~~ 246 (822)
+.
T Consensus 129 l~ 130 (194)
T cd01891 129 RP 130 (194)
T ss_pred CC
Confidence 85
No 78
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.48 E-value=2.5e-06 Score=83.02 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=24.1
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNV 86 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~ 86 (822)
.|+|||++++||||++++|++.+|+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~ 28 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSE 28 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 68999999999999999999998873
No 79
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.48 E-value=5.2e-07 Score=88.68 Aligned_cols=21 Identities=38% Similarity=0.400 Sum_probs=19.5
Q ss_pred EEcCCCCchhhHHHHHhCCcc
Q 003415 64 ALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 64 VVG~QSsGKSSlLEAL~G~~f 84 (822)
++|++++||||+|++|+|..+
T Consensus 1 iiG~~~~GKStll~~l~~~~~ 21 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP 21 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc
Confidence 589999999999999999876
No 80
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.47 E-value=2.6e-06 Score=83.05 Aligned_cols=68 Identities=21% Similarity=0.178 Sum_probs=43.4
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+|+||.. ....+...|+++.+.+|+ |.+.++.-.-+ .++..++.+...+...+.|.||
T Consensus 49 ~~l~l~D~~G~~-------------~~~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK 114 (161)
T cd04113 49 VKLQIWDTAGQE-------------RFRSVTRSYYRGAAGALL-VYDITNRTSFEALPTWLSDARALASPNIVVILVGNK 114 (161)
T ss_pred EEEEEEECcchH-------------HHHHhHHHHhcCCCEEEE-EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence 467899999952 334567788888875555 45555332222 2444444443345789999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 115 ~D~~~ 119 (161)
T cd04113 115 SDLAD 119 (161)
T ss_pred hhcch
Confidence 99853
No 81
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.47 E-value=2.5e-06 Score=86.52 Aligned_cols=66 Identities=23% Similarity=0.281 Sum_probs=45.7
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.+.|+|+||- +....+...|++..+ ++++|.+++..-.- ..++..+++..+.+.+.|.|.||.
T Consensus 51 ~~~i~Dt~G~-------------~~~~~~~~~~~~~ad-~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~ 116 (191)
T cd04112 51 KLQIWDTAGQ-------------ERFRSVTHAYYRDAH-ALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKA 116 (191)
T ss_pred EEEEEeCCCc-------------HHHHHhhHHHccCCC-EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcc
Confidence 5789999993 234556678888887 55556665532111 235666777777778899999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 117 Dl~ 119 (191)
T cd04112 117 DMS 119 (191)
T ss_pred cch
Confidence 985
No 82
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.47 E-value=7e-06 Score=81.60 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=25.0
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCcccc
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFNV 86 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp~ 86 (822)
...|+|+|+.++|||||++.+++-.|+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~ 31 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNP 31 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc
Confidence 3579999999999999999999988863
No 83
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.46 E-value=2.9e-06 Score=83.26 Aligned_cols=66 Identities=21% Similarity=0.290 Sum_probs=42.7
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.+.|+|+||. +....+...|+++.+.||+++ ++++.-.- ..++..++.....+...|.|.||.
T Consensus 52 ~~~i~D~~G~-------------~~~~~~~~~~~~~~~~ii~v~-d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~ 117 (166)
T cd01869 52 KLQIWDTAGQ-------------ERFRTITSSYYRGAHGIIIVY-DVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 117 (166)
T ss_pred EEEEEECCCc-------------HhHHHHHHHHhCcCCEEEEEE-ECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 5679999994 134567788888888665554 54421111 224555555544467889999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 118 Dl~ 120 (166)
T cd01869 118 DLT 120 (166)
T ss_pred hcc
Confidence 984
No 84
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.45 E-value=5.3e-06 Score=82.36 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=42.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH---HHH-HHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL---WLD-AIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~---il~-lar~~Dp~g~RTIgViT 241 (822)
..+.++|+||-. ..+.+...|+++.+.+|+ |+++++.-.-.. ++. +.+.....+...+.|.|
T Consensus 43 ~~~~i~D~~G~~-------------~~~~~~~~~~~~a~~ii~-V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~N 108 (167)
T cd04161 43 YEVCIFDLGGGA-------------NFRGIWVNYYAEAHGLVF-VVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLAN 108 (167)
T ss_pred EEEEEEECCCcH-------------HHHHHHHHHHcCCCEEEE-EEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEe
Confidence 568899999941 345677899999885555 556553322222 222 22222224678999999
Q ss_pred CCCc
Q 003415 242 KFDN 245 (822)
Q Consensus 242 K~D~ 245 (822)
|.|+
T Consensus 109 K~Dl 112 (167)
T cd04161 109 KQDK 112 (167)
T ss_pred CCCC
Confidence 9998
No 85
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.44 E-value=1.6e-06 Score=87.34 Aligned_cols=67 Identities=16% Similarity=0.055 Sum_probs=41.9
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH---HH-HHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL---WL-DAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~---il-~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||. +..+.+...|+++.+ +++.|+++++.-.-.. ++ ++.+.....+.+.|+|+|
T Consensus 52 ~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d-~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~N 117 (183)
T cd04152 52 ITFHFWDVGGQ-------------EKLRPLWKSYTRCTD-GIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLAN 117 (183)
T ss_pred eEEEEEECCCc-------------HhHHHHHHHHhccCC-EEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 46889999994 133556778888877 5555666653211111 22 233333335688999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 118 K~D~~ 122 (183)
T cd04152 118 KQDLP 122 (183)
T ss_pred CcCcc
Confidence 99983
No 86
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.44 E-value=1.7e-06 Score=93.82 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=24.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNV 86 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~ 86 (822)
.|+|||+.++||||++|+|.+-.+..
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~ 31 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIP 31 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcc
Confidence 68999999999999999999988763
No 87
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.43 E-value=4e-06 Score=80.96 Aligned_cols=67 Identities=16% Similarity=0.154 Sum_probs=42.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.++|+||.. ....+...|+++.+ ++++|++.++.-.-+ .+++..+...+.....|+|+||
T Consensus 49 ~~~~~~D~~g~~-------------~~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK 114 (162)
T cd04123 49 IDLAIWDTAGQE-------------RYHALGPIYYRDAD-GAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNK 114 (162)
T ss_pred EEEEEEECCchH-------------HHHHhhHHHhccCC-EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 368899999942 23445666777766 555555554322212 2344445555556789999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 115 ~D~~ 118 (162)
T cd04123 115 IDLE 118 (162)
T ss_pred cccc
Confidence 9985
No 88
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.43 E-value=1.2e-06 Score=104.07 Aligned_cols=131 Identities=21% Similarity=0.262 Sum_probs=76.6
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
+..|-|+|+|+.++||||||++|+|..|.....|..|+..-...+ +.+ .+
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v--------------------------~~~----~~ 51 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEI--------------------------PMD----VI 51 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEe--------------------------eec----cc
Confidence 467999999999999999999999988754333444542100000 000 00
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE 216 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D 216 (822)
... .+ ... . ..++.. ..+.++|+||||.- ....|...|....+ ++++|++++..
T Consensus 52 ~~~-------~~-~~~-~--~~~v~~-~~~~l~~iDTpG~e-------------~f~~l~~~~~~~aD-~~IlVvD~~~g 105 (590)
T TIGR00491 52 EGI-------CG-DLL-K--KFKIRL-KIPGLLFIDTPGHE-------------AFTNLRKRGGALAD-LAILIVDINEG 105 (590)
T ss_pred ccc-------cc-ccc-c--cccccc-ccCcEEEEECCCcH-------------hHHHHHHHHHhhCC-EEEEEEECCcC
Confidence 000 00 000 0 011111 13579999999941 23445566777777 66667777755
Q ss_pred cchHH--HHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 217 WCSSL--WLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 217 ~~nq~--il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
+..+. .+++++. .+.+.|.|+||+|+.
T Consensus 106 ~~~qt~e~i~~l~~---~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 106 FKPQTQEALNILRM---YKTPFVVAANKIDRI 134 (590)
T ss_pred CCHhHHHHHHHHHH---cCCCEEEEEECCCcc
Confidence 44433 3444443 467899999999984
No 89
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.42 E-value=2.8e-06 Score=82.61 Aligned_cols=67 Identities=19% Similarity=0.157 Sum_probs=41.8
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHH-HHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWL-DAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il-~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||.. ....+...|++..+.+|+++ ++++.-.-. .+. .+.+..+....+.|+|.|
T Consensus 50 ~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~ilv~-d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~N 115 (164)
T cd04145 50 AILDILDTAGQE-------------EFSAMREQYMRTGEGFLLVF-SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGN 115 (164)
T ss_pred EEEEEEECCCCc-------------chhHHHHHHHhhCCEEEEEE-ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEee
Confidence 467899999952 23456778888888666555 544321111 122 233333445678999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 116 K~Dl~ 120 (164)
T cd04145 116 KADLE 120 (164)
T ss_pred Ccccc
Confidence 99984
No 90
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.9e-05 Score=92.52 Aligned_cols=169 Identities=18% Similarity=0.259 Sum_probs=100.5
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHH
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKS 138 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~ 138 (822)
--.|++-|+-|+|||||+||++..++.|-|.|.||-|=.+|.=..+ ..|....+..++ ..+...+...+.
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG-----~e~vl~~~~s~e----k~d~~ti~~~~h- 178 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADG-----AEAVLATEGSEE----KIDMKTINQLAH- 178 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCC-----cceeeccCCCcc----cccHHHHhHHHH-
Confidence 4489999999999999999999999999999999987655532111 112222111111 111111111111
Q ss_pred HHHHHHhccCCccCCCceEEEEeecCC------CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEec
Q 003415 139 RTEALLKKTKTSVSPKPIVMRAEYAHC------PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQ 212 (822)
Q Consensus 139 a~e~~l~~~g~~fS~~~i~L~Ie~p~~------~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~ 212 (822)
+ +... .. -.....|+|..|+- .++.|||-||+.-.+ ....-|.+....-+ |.++|+.
T Consensus 179 ---a-L~~~-~~-~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s----------e~tswid~~cldaD-VfVlV~N 241 (749)
T KOG0448|consen 179 ---A-LKPD-KD-LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS----------ELTSWIDSFCLDAD-VFVLVVN 241 (749)
T ss_pred ---h-cCcc-cc-cCcceEEEEEecCccchhhhccceeccCCCCCCch----------hhhHHHHHHhhcCC-eEEEEec
Confidence 1 1110 01 12346888998843 589999999995432 22345666666777 6666666
Q ss_pred CCcccchHHHHHHHHHhCCCCCcEEE-EeeCCCccccccccHHHH
Q 003415 213 SSVEWCSSLWLDAIREIDPTFRRTVI-VVSKFDNRLKEFSDRWEV 256 (822)
Q Consensus 213 A~~D~~nq~il~lar~~Dp~g~RTIg-ViTK~D~~~~~~s~~~~v 256 (822)
|.+.+..++ .++.+.+-.+ +.-|+ +.+|||..-.+..-..+|
T Consensus 242 aEntlt~se-k~Ff~~vs~~-KpniFIlnnkwDasase~ec~e~V 284 (749)
T KOG0448|consen 242 AENTLTLSE-KQFFHKVSEE-KPNIFILNNKWDASASEPECKEDV 284 (749)
T ss_pred CccHhHHHH-HHHHHHhhcc-CCcEEEEechhhhhcccHHHHHHH
Confidence 766666654 6666666555 55555 555999964443333333
No 91
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.41 E-value=6.2e-06 Score=80.46 Aligned_cols=66 Identities=23% Similarity=0.310 Sum_probs=44.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.+.|+||. +....|+..|+++.+. ++.|.+.++.-.- ..|+...+...+ ....|.|.||
T Consensus 52 ~~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK 116 (164)
T cd04101 52 VELFIFDSAGQ-------------ELYSDMVSNYWESPSV-FILVYDVSNKASFENCSRWVNKVRTASK-HMPGVLVGNK 116 (164)
T ss_pred EEEEEEECCCH-------------HHHHHHHHHHhCCCCE-EEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 46789999994 3456788889988874 5555555532111 235555555543 5789999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 117 ~Dl~ 120 (164)
T cd04101 117 MDLA 120 (164)
T ss_pred cccc
Confidence 9984
No 92
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.41 E-value=1.2e-06 Score=88.69 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=51.1
Q ss_pred ccCCCceEEEEe-ecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHH
Q 003415 150 SVSPKPIVMRAE-YAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAI 226 (822)
Q Consensus 150 ~fS~~~i~L~Ie-~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~la 226 (822)
+++-+.-....+ ......++|||+||.. +.+.++ ...++..+ ++++|+++......+. .+.++
T Consensus 53 ~~ti~~~~~~~~~~~~~~~i~~iDtPG~~------------~f~~~~-~~~~~~~D-~ailvVda~~g~~~~~~~~l~~~ 118 (188)
T PF00009_consen 53 GITIDLSFISFEKNENNRKITLIDTPGHE------------DFIKEM-IRGLRQAD-IAILVVDANDGIQPQTEEHLKIL 118 (188)
T ss_dssp TSSSSSEEEEEEBTESSEEEEEEEESSSH------------HHHHHH-HHHHTTSS-EEEEEEETTTBSTHHHHHHHHHH
T ss_pred ccccccccccccccccccceeeccccccc------------ceeecc-cceecccc-cceeeeecccccccccccccccc
Confidence 344444444444 3356789999999952 233343 44477787 5667777776665543 45555
Q ss_pred HHhCCCCCcEEEEeeCCCcc
Q 003415 227 REIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 227 r~~Dp~g~RTIgViTK~D~~ 246 (822)
+.. +.+.|+|+||+|+.
T Consensus 119 ~~~---~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 119 REL---GIPIIVVLNKMDLI 135 (188)
T ss_dssp HHT---T-SEEEEEETCTSS
T ss_pred ccc---ccceEEeeeeccch
Confidence 554 56799999999996
No 93
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=1.4e-06 Score=98.83 Aligned_cols=138 Identities=19% Similarity=0.128 Sum_probs=80.1
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcccccccccc-cccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMG-TRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~c-TR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
.-+|||++|.+|+|||||||||+.-+.-.++.-.. || |.
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTR---------------------------------------Da- 306 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTR---------------------------------------DA- 306 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcch---------------------------------------hh-
Confidence 34799999999999999999999877533321111 11 11
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHH-HHHHHHhcCCCCcEEEEEecCCc
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEI-LSMVKSLASPPHRILVFLQQSSV 215 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v-~~LV~~Yik~~~sIILaVv~A~~ 215 (822)
|...|. ++.....|+||-|+-.... +..+.+ -+-.++-++..+ +|++|++|..
T Consensus 307 -------------------iea~v~-~~G~~v~L~DTAGiRe~~~-----~~iE~~gI~rA~k~~~~ad-vi~~vvda~~ 360 (531)
T KOG1191|consen 307 -------------------IEAQVT-VNGVPVRLSDTAGIREESN-----DGIEALGIERARKRIERAD-VILLVVDAEE 360 (531)
T ss_pred -------------------heeEee-cCCeEEEEEeccccccccC-----ChhHHHhHHHHHHHHhhcC-EEEEEecccc
Confidence 122222 2346789999999987222 222222 122355666666 8999999854
Q ss_pred ccchHH--HHHHHHHh-------CC--CCCcEEEEeeCCCccccccccHHHHHHHhh
Q 003415 216 EWCSSL--WLDAIREI-------DP--TFRRTVIVVSKFDNRLKEFSDRWEVDRYLS 261 (822)
Q Consensus 216 D~~nq~--il~lar~~-------Dp--~g~RTIgViTK~D~~~~~~s~~~~v~~~l~ 261 (822)
-+..++ +.+.+... ++ ...|.|.|.+|.|...+...-.|....|+.
T Consensus 361 ~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~ 417 (531)
T KOG1191|consen 361 SDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPS 417 (531)
T ss_pred cccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccc
Confidence 443333 12222211 11 136788889999987664444443333444
No 94
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.40 E-value=2.2e-06 Score=83.88 Aligned_cols=68 Identities=15% Similarity=0.070 Sum_probs=42.4
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH----HHHHHHHHhCCCCCcEEEEe
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS----LWLDAIREIDPTFRRTVIVV 240 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq----~il~lar~~Dp~g~RTIgVi 240 (822)
...+.|+||||.. ....+...|++..+ .+++|+++...-.-. .+..+.+.....+.+.|.|+
T Consensus 49 ~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~~-~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 114 (167)
T cd04160 49 NARLKFWDLGGQE-------------SLRSLWDKYYAECH-AIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILA 114 (167)
T ss_pred CEEEEEEECCCCh-------------hhHHHHHHHhCCCC-EEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 3578999999963 23456778888888 455556655321111 12223332223468999999
Q ss_pred eCCCcc
Q 003415 241 SKFDNR 246 (822)
Q Consensus 241 TK~D~~ 246 (822)
||.|+.
T Consensus 115 NK~D~~ 120 (167)
T cd04160 115 NKQDLP 120 (167)
T ss_pred Eccccc
Confidence 999973
No 95
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.40 E-value=2.9e-06 Score=103.61 Aligned_cols=74 Identities=9% Similarity=0.021 Sum_probs=44.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcC--CCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLAS--PPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik--~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~ 243 (822)
..+.||||||+..-.......... +.+.+.|+. .++ +++.|+|+++--.+. .+..++...+.++|.|+||.
T Consensus 50 ~~i~lvDtPG~ysl~~~~~~~s~~---E~i~~~~l~~~~aD-~vI~VvDat~ler~l---~l~~ql~e~giPvIvVlNK~ 122 (772)
T PRK09554 50 HQVTLVDLPGTYSLTTISSQTSLD---EQIACHYILSGDAD-LLINVVDASNLERNL---YLTLQLLELGIPCIVALNML 122 (772)
T ss_pred eEEEEEECCCccccccccccccHH---HHHHHHHHhccCCC-EEEEEecCCcchhhH---HHHHHHHHcCCCEEEEEEch
Confidence 468999999997543211111112 224455654 444 677888887532222 23333334578999999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 123 Dl~ 125 (772)
T PRK09554 123 DIA 125 (772)
T ss_pred hhh
Confidence 985
No 96
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.39 E-value=3.1e-06 Score=82.22 Aligned_cols=67 Identities=19% Similarity=0.090 Sum_probs=41.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHH----HHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLW----LDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~i----l~lar~~Dp~g~RTIgViT 241 (822)
..|.|+|+||.. ....+...|++..+ .|++|+|+.+...-..+ .++.+.....+.+.|.|+|
T Consensus 44 ~~l~i~D~~G~~-------------~~~~~~~~~~~~~~-~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 109 (160)
T cd04156 44 LSLTVWDVGGQE-------------KMRTVWKCYLENTD-GLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLAN 109 (160)
T ss_pred eEEEEEECCCCH-------------hHHHHHHHHhccCC-EEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEE
Confidence 578999999962 24456677888887 45566666543221222 2222221124688999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 110 K~Dl~ 114 (160)
T cd04156 110 KQDLP 114 (160)
T ss_pred Ccccc
Confidence 99984
No 97
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.39 E-value=2.6e-06 Score=82.73 Aligned_cols=67 Identities=19% Similarity=0.104 Sum_probs=42.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc----chHHHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW----CSSLWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~----~nq~il~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||... ...+...|++..+.++ +|.++...- ..+.+..+.+.....+.+.|.|.|
T Consensus 43 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i-~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 108 (158)
T cd00878 43 VSFTVWDVGGQDK-------------IRPLWKHYYENTNGII-FVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFAN 108 (158)
T ss_pred EEEEEEECCCChh-------------hHHHHHHHhccCCEEE-EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEee
Confidence 5789999999532 2445667888877444 466665331 112223344444445789999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 109 K~D~~ 113 (158)
T cd00878 109 KQDLP 113 (158)
T ss_pred ccCCc
Confidence 99985
No 98
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.37 E-value=7.1e-06 Score=80.72 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=43.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+|+||. +....+...|+++.+.+||++ +.++.-.- ..|+..++.........|.|.||
T Consensus 51 ~~l~i~Dt~G~-------------~~~~~~~~~~~~~~~~~ilv~-d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK 116 (166)
T cd04122 51 IKLQIWDTAGQ-------------ERFRAVTRSYYRGAAGALMVY-DITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNK 116 (166)
T ss_pred EEEEEEECCCc-------------HHHHHHHHHHhcCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 36789999994 234567788999888666555 44422211 23455455554445788999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 117 ~Dl~ 120 (166)
T cd04122 117 ADLE 120 (166)
T ss_pred cccc
Confidence 9984
No 99
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.37 E-value=1.6e-06 Score=89.56 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=48.3
Q ss_pred ccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHH
Q 003415 150 SVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIR 227 (822)
Q Consensus 150 ~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar 227 (822)
+++-+.....++. ....++|+||||.. +.... +..+++..+ ++|+|+++...+..+. ...+++
T Consensus 62 g~T~~~~~~~~~~-~~~~~~liDTpG~~------------~~~~~-~~~~~~~ad-~~llVvD~~~~~~~~~~~~~~~~~ 126 (208)
T cd04166 62 GITIDVAYRYFST-PKRKFIIADTPGHE------------QYTRN-MVTGASTAD-LAILLVDARKGVLEQTRRHSYILS 126 (208)
T ss_pred CcCeecceeEEec-CCceEEEEECCcHH------------HHHHH-HHHhhhhCC-EEEEEEECCCCccHhHHHHHHHHH
Confidence 4555544555544 34578999999962 12223 334667776 6677777776664443 344454
Q ss_pred HhCCCCCcEEEEeeCCCcc
Q 003415 228 EIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 228 ~~Dp~g~RTIgViTK~D~~ 246 (822)
... ..+.|+|+||+|+.
T Consensus 127 ~~~--~~~iIvviNK~D~~ 143 (208)
T cd04166 127 LLG--IRHVVVAVNKMDLV 143 (208)
T ss_pred HcC--CCcEEEEEEchhcc
Confidence 432 14578899999984
No 100
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.37 E-value=3.5e-06 Score=83.16 Aligned_cols=66 Identities=20% Similarity=0.157 Sum_probs=42.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH----HHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS----LWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq----~il~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||.... +.+...|++..+.+ ++|.+.++.-... .|...++...+ +...|+|.|
T Consensus 47 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~~-ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~n 111 (166)
T cd01893 47 VPTTIVDTSSRPQD-------------RANLAAEIRKANVI-CLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGN 111 (166)
T ss_pred EEEEEEeCCCchhh-------------hHHHhhhcccCCEE-EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEE
Confidence 36889999996321 23445677777755 5555655332222 25566666544 689999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|+|+.
T Consensus 112 K~Dl~ 116 (166)
T cd01893 112 KSDLR 116 (166)
T ss_pred chhcc
Confidence 99994
No 101
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.36 E-value=6e-06 Score=79.99 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=42.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc-c--chHHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE-W--CSSLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D-~--~nq~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+|+||.. ....+...|++..+.+|+++...+.+ + ....+..+.+..++...+.|.|+||
T Consensus 48 ~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK 114 (164)
T cd04139 48 VQLNILDTAGQE-------------DYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNK 114 (164)
T ss_pred EEEEEEECCChh-------------hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEc
Confidence 347899999952 23456677888888777666422211 0 1122233333334557899999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 115 ~D~~~ 119 (164)
T cd04139 115 CDLED 119 (164)
T ss_pred ccccc
Confidence 99853
No 102
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.36 E-value=8.5e-06 Score=80.24 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-.|+|||+.++|||||++.+.+-.|+
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~ 31 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFD 31 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 47999999999999999999987776
No 103
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.36 E-value=3.3e-06 Score=83.91 Aligned_cols=67 Identities=15% Similarity=0.062 Sum_probs=41.6
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH----HHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL----WLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~----il~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||.. ..+.+...|+...+.+|+ |++++..-.-.. +..+.+.....+.+.|+|+|
T Consensus 58 ~~l~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~n 123 (173)
T cd04154 58 YKLNIWDVGGQK-------------TLRPYWRNYFESTDALIW-VVDSSDRLRLDDCKRELKELLQEERLAGATLLILAN 123 (173)
T ss_pred EEEEEEECCCCH-------------HHHHHHHHHhCCCCEEEE-EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 468999999952 245677888988885554 555553311111 22222222224689999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 124 K~Dl~ 128 (173)
T cd04154 124 KQDLP 128 (173)
T ss_pred Ccccc
Confidence 99984
No 104
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.36 E-value=2.7e-06 Score=83.60 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=44.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|.||||-. ....+...|+++.+. +|+|++.+....- ..|+..+++..+ ..+.|.|.||
T Consensus 49 ~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK 113 (161)
T cd04124 49 ILVDFWDTAGQE-------------RFQTMHASYYHKAHA-CILVFDVTRKITYKNLSKWYEELREYRP-EIPCIVVANK 113 (161)
T ss_pred EEEEEEeCCCch-------------hhhhhhHHHhCCCCE-EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEC
Confidence 467899999942 345677889998885 5555565543322 235555555544 4789999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 114 ~Dl~ 117 (161)
T cd04124 114 IDLD 117 (161)
T ss_pred ccCc
Confidence 9983
No 105
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.36 E-value=4.8e-06 Score=79.63 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.8
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
.|++||++++|||||+++|+|..+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~ 25 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI 25 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc
Confidence 589999999999999999997754
No 106
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.36 E-value=5.3e-06 Score=80.61 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=23.2
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..|+|+|+.++|||||++.+++-.|.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~ 27 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV 27 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 47999999999999999999977664
No 107
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.36 E-value=5e-06 Score=81.15 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=23.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|+|+|+.++|||||+++|.+..|+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~ 26 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV 26 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC
Confidence 6899999999999999999988876
No 108
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.35 E-value=1.8e-05 Score=80.95 Aligned_cols=65 Identities=20% Similarity=0.232 Sum_probs=41.5
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEeeCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.+.|+|+||- +....+...|+.+.+.| ++|.++++.-+-+ .|+...+...+ ..+.|.|.||.
T Consensus 56 ~l~l~D~~G~-------------~~~~~~~~~~~~~a~~i-ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~ 120 (199)
T cd04110 56 KLQIWDTAGQ-------------ERFRTITSTYYRGTHGV-IVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKN 120 (199)
T ss_pred EEEEEeCCCc-------------hhHHHHHHHHhCCCcEE-EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECc
Confidence 5789999994 12456678899888754 4556655322222 24444444333 46789999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 121 Dl~ 123 (199)
T cd04110 121 DDP 123 (199)
T ss_pred ccc
Confidence 984
No 109
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.34 E-value=3.8e-06 Score=86.49 Aligned_cols=65 Identities=18% Similarity=0.108 Sum_probs=41.7
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCC-cEEEEee
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFR-RTVIVVS 241 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~-RTIgViT 241 (822)
...++||||||.. ..+..+ ..-+...+ .+++|+++...+..++ ++.++.+ .+. +.|+|+|
T Consensus 64 ~~~i~~iDtPG~~------------~~~~~~-~~~~~~~D-~~ilVvda~~g~~~~~~~~~~~~~~---~~~~~iIvviN 126 (195)
T cd01884 64 NRHYAHVDCPGHA------------DYIKNM-ITGAAQMD-GAILVVSATDGPMPQTREHLLLARQ---VGVPYIVVFLN 126 (195)
T ss_pred CeEEEEEECcCHH------------HHHHHH-HHHhhhCC-EEEEEEECCCCCcHHHHHHHHHHHH---cCCCcEEEEEe
Confidence 4578999999973 233333 33345556 5666777876665553 4444444 355 4789999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|+|+.
T Consensus 127 K~D~~ 131 (195)
T cd01884 127 KADMV 131 (195)
T ss_pred CCCCC
Confidence 99985
No 110
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.33 E-value=8.1e-06 Score=82.10 Aligned_cols=29 Identities=31% Similarity=0.355 Sum_probs=25.6
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..-++|+++|+++||||||+++|++-.+.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~ 45 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA 45 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc
Confidence 45689999999999999999999987653
No 111
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.33 E-value=4.4e-06 Score=81.54 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=42.8
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccc----hHHHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWC----SSLWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~----nq~il~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||.. ..+.+...|++..+.+ |.|++++..-. ...+..+.+.....+...|+|+|
T Consensus 43 ~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~i-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 108 (158)
T cd04151 43 LKFQVWDLGGQT-------------SIRPYWRCYYSNTDAI-IYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFAN 108 (158)
T ss_pred EEEEEEECCCCH-------------HHHHHHHHHhcCCCEE-EEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEe
Confidence 457899999963 2345677889888855 45556553211 12233344433334689999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 109 K~Dl~ 113 (158)
T cd04151 109 KQDMP 113 (158)
T ss_pred CCCCC
Confidence 99984
No 112
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.33 E-value=6.4e-06 Score=83.21 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
.-+.|+++|.+++||||+++.|+|..|
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~ 42 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRL 42 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 447999999999999999999998765
No 113
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.31 E-value=8e-06 Score=78.64 Aligned_cols=68 Identities=16% Similarity=0.070 Sum_probs=41.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCC-CCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDP-TFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp-~g~RTIgViT 241 (822)
..+.++|+||... ...+...+++..+.+|+ |.+.++.... ..+........+ .+.+.+.|+|
T Consensus 47 ~~~~l~D~~g~~~-------------~~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n 112 (160)
T cd00876 47 YTLDILDTAGQEE-------------FSAMRDLYIRQGDGFIL-VYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGN 112 (160)
T ss_pred EEEEEEECCChHH-------------HHHHHHHHHhcCCEEEE-EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 4678999999532 34556677777775555 4444322211 122333333333 4789999999
Q ss_pred CCCccc
Q 003415 242 KFDNRL 247 (822)
Q Consensus 242 K~D~~~ 247 (822)
|.|+..
T Consensus 113 K~D~~~ 118 (160)
T cd00876 113 KCDLEN 118 (160)
T ss_pred CCcccc
Confidence 999854
No 114
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.31 E-value=2.8e-06 Score=91.77 Aligned_cols=81 Identities=17% Similarity=0.109 Sum_probs=51.0
Q ss_pred ccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHh
Q 003415 150 SVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREI 229 (822)
Q Consensus 150 ~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~ 229 (822)
++|-+.....+++. ...++||||||... ....+.+++..-+ .+++|+++...+..++ ..+++.+
T Consensus 49 giti~~~~~~~~~~-~~~i~liDTPG~~d-------------f~~~~~~~l~~aD-~ailVVDa~~g~~~~t-~~~~~~~ 112 (270)
T cd01886 49 GITIQSAATTCFWK-DHRINIIDTPGHVD-------------FTIEVERSLRVLD-GAVAVFDAVAGVEPQT-ETVWRQA 112 (270)
T ss_pred CcCeeccEEEEEEC-CEEEEEEECCCcHH-------------HHHHHHHHHHHcC-EEEEEEECCCCCCHHH-HHHHHHH
Confidence 34444445555554 35789999999742 1123566777777 5555678876665543 2333333
Q ss_pred CCCCCcEEEEeeCCCcc
Q 003415 230 DPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 230 Dp~g~RTIgViTK~D~~ 246 (822)
...+.+.|+|+||+|+.
T Consensus 113 ~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 113 DRYNVPRIAFVNKMDRT 129 (270)
T ss_pred HHcCCCEEEEEECCCCC
Confidence 34468899999999984
No 115
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.31 E-value=7.9e-06 Score=79.99 Aligned_cols=68 Identities=18% Similarity=0.104 Sum_probs=42.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHH-HHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAI-REIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~la-r~~Dp~g~RTIgViT 241 (822)
..|.|+||||.. ....+...|++..+.+|+++- .+..-.-. .++... +.....+.+.|.|.|
T Consensus 49 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~d-~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 114 (164)
T cd04175 49 CMLEILDTAGTE-------------QFTAMRDLYMKNGQGFVLVYS-ITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 114 (164)
T ss_pred EEEEEEECCCcc-------------cchhHHHHHHhhCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 567899999952 234566778888887766653 33222111 233333 223445678999999
Q ss_pred CCCccc
Q 003415 242 KFDNRL 247 (822)
Q Consensus 242 K~D~~~ 247 (822)
|.|+..
T Consensus 115 K~Dl~~ 120 (164)
T cd04175 115 KCDLED 120 (164)
T ss_pred CCcchh
Confidence 999853
No 116
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.31 E-value=6.6e-06 Score=80.67 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=50.0
Q ss_pred EEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCccccc
Q 003415 170 IIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLKE 249 (822)
Q Consensus 170 lVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~~~ 249 (822)
+|||||=+-- .....+.|+..- . .-.+|++|.+|+...+.-. -.+++-+ ..++||||||.|+. +.
T Consensus 40 ~IDTPGEyiE--------~~~~y~aLi~ta-~-dad~V~ll~dat~~~~~~p-P~fa~~f---~~pvIGVITK~Dl~-~~ 104 (143)
T PF10662_consen 40 TIDTPGEYIE--------NPRFYHALIVTA-Q-DADVVLLLQDATEPRSVFP-PGFASMF---NKPVIGVITKIDLP-SD 104 (143)
T ss_pred EEECChhhee--------CHHHHHHHHHHH-h-hCCEEEEEecCCCCCccCC-chhhccc---CCCEEEEEECccCc-cc
Confidence 5999995432 223344443322 2 3458999999886544321 2334444 47999999999994 22
Q ss_pred cccHHHHHHHhhhcCCcCCCCCCcEEe
Q 003415 250 FSDRWEVDRYLSASGYLGENTRPFFVA 276 (822)
Q Consensus 250 ~s~~~~v~~~l~~~G~l~~~~~gw~v~ 276 (822)
..+-....++|...|. ..+|+|.
T Consensus 105 ~~~i~~a~~~L~~aG~----~~if~vS 127 (143)
T PF10662_consen 105 DANIERAKKWLKNAGV----KEIFEVS 127 (143)
T ss_pred hhhHHHHHHHHHHcCC----CCeEEEE
Confidence 2222224567776664 2345554
No 117
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.31 E-value=2.5e-05 Score=87.66 Aligned_cols=68 Identities=16% Similarity=0.228 Sum_probs=35.6
Q ss_pred eecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcC-----CCCcEEEEEecCCcccchHHHHHHHHHhCCCCCc
Q 003415 161 EYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLAS-----PPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRR 235 (822)
Q Consensus 161 e~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik-----~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~R 235 (822)
..|..||++|.||||+.... .. ...|++ +=+. +++|.+ . -+...+ ..+|+++-..|++
T Consensus 81 ~~p~~pnv~lWDlPG~gt~~------f~-------~~~Yl~~~~~~~yD~-fiii~s-~-rf~~nd-v~La~~i~~~gK~ 143 (376)
T PF05049_consen 81 PHPKFPNVTLWDLPGIGTPN------FP-------PEEYLKEVKFYRYDF-FIIISS-E-RFTEND-VQLAKEIQRMGKK 143 (376)
T ss_dssp E-SS-TTEEEEEE--GGGSS---------------HHHHHHHTTGGG-SE-EEEEES-S-S--HHH-HHHHHHHHHTT-E
T ss_pred CCCCCCCCeEEeCCCCCCCC------CC-------HHHHHHHccccccCE-EEEEeC-C-CCchhh-HHHHHHHHHcCCc
Confidence 34678999999999996432 11 123332 2343 333332 2 333333 5677777778999
Q ss_pred EEEEeeCCCc
Q 003415 236 TVIVVSKFDN 245 (822)
Q Consensus 236 TIgViTK~D~ 245 (822)
..+|-||.|.
T Consensus 144 fyfVRTKvD~ 153 (376)
T PF05049_consen 144 FYFVRTKVDS 153 (376)
T ss_dssp EEEEE--HHH
T ss_pred EEEEEecccc
Confidence 9999999997
No 118
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.30 E-value=5.5e-06 Score=79.96 Aligned_cols=67 Identities=22% Similarity=0.161 Sum_probs=41.4
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc-ccchH-HHH-HHHHHhCCCCCcEEEEeeCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV-EWCSS-LWL-DAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~-D~~nq-~il-~lar~~Dp~g~RTIgViTK~ 243 (822)
.+.|+||||.- ....|...|++..+.+++++.-.+. .+.+. .+. .+.+..+..+.+.|.|.||.
T Consensus 50 ~~~i~Dt~G~~-------------~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~ 116 (162)
T cd04138 50 LLDILDTAGQE-------------EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKC 116 (162)
T ss_pred EEEEEECCCCc-------------chHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 46789999941 2456778899988866666532221 11111 122 23333344567899999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 117 Dl~ 119 (162)
T cd04138 117 DLA 119 (162)
T ss_pred ccc
Confidence 984
No 119
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.30 E-value=2.2e-06 Score=90.77 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=45.9
Q ss_pred EEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH--HHHHHHHHhCCCCC
Q 003415 157 VMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS--LWLDAIREIDPTFR 234 (822)
Q Consensus 157 ~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq--~il~lar~~Dp~g~ 234 (822)
...++.. -..++|+||||... ....+..|++..+.+|+ |+++......+ .+++.+++ .+.
T Consensus 56 ~~~~~~~-~~~i~liDTPG~~~-------------f~~~~~~~l~~aD~~Il-Vvd~~~g~~~~~~~~~~~~~~---~~~ 117 (237)
T cd04168 56 VASFQWE-DTKVNLIDTPGHMD-------------FIAEVERSLSVLDGAIL-VISAVEGVQAQTRILWRLLRK---LNI 117 (237)
T ss_pred eEEEEEC-CEEEEEEeCCCccc-------------hHHHHHHHHHHhCeEEE-EEeCCCCCCHHHHHHHHHHHH---cCC
Confidence 3444443 34799999999842 12345667777775544 55666555433 24444443 478
Q ss_pred cEEEEeeCCCcc
Q 003415 235 RTVIVVSKFDNR 246 (822)
Q Consensus 235 RTIgViTK~D~~ 246 (822)
+.|+|+||.|+.
T Consensus 118 P~iivvNK~D~~ 129 (237)
T cd04168 118 PTIIFVNKIDRA 129 (237)
T ss_pred CEEEEEECcccc
Confidence 899999999984
No 120
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.29 E-value=7.7e-06 Score=80.65 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.-..|+|+|.+++|||||+++|+|..+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~ 40 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS 40 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc
Confidence 3578999999999999999999987553
No 121
>COG2262 HflX GTPases [General function prediction only]
Probab=98.27 E-value=1.3e-05 Score=89.56 Aligned_cols=129 Identities=22% Similarity=0.277 Sum_probs=86.0
Q ss_pred CCCCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHH
Q 003415 55 EKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIAD 134 (822)
Q Consensus 55 ~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~ 134 (822)
..-.+|+|.+||=.|||||||+|+|+|-..+..+.--.|=-||
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpt------------------------------------- 230 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPT------------------------------------- 230 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCc-------------------------------------
Confidence 4579999999999999999999999987766333111111110
Q ss_pred HHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCC
Q 003415 135 IIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSS 214 (822)
Q Consensus 135 ~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~ 214 (822)
.=+|..++.-...|-||-|||+.= |...++..+.-.+. ..+.+ ++|.|+|++
T Consensus 231 ----------------------tR~~~l~~g~~vlLtDTVGFI~~L----P~~LV~AFksTLEE-~~~aD-lllhVVDaS 282 (411)
T COG2262 231 ----------------------TRRIELGDGRKVLLTDTVGFIRDL----PHPLVEAFKSTLEE-VKEAD-LLLHVVDAS 282 (411)
T ss_pred ----------------------eeEEEeCCCceEEEecCccCcccC----ChHHHHHHHHHHHH-hhcCC-EEEEEeecC
Confidence 011222334568899999999753 33444444433222 33455 888899888
Q ss_pred cccch---HHHHHHHHHhCCCCCcEEEEeeCCCcccc
Q 003415 215 VEWCS---SLWLDAIREIDPTFRRTVIVVSKFDNRLK 248 (822)
Q Consensus 215 ~D~~n---q~il~lar~~Dp~g~RTIgViTK~D~~~~ 248 (822)
.+... ..+.++.++++-...++|.|+||.|++.+
T Consensus 283 dp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 283 DPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED 319 (411)
T ss_pred ChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc
Confidence 65322 23677888887777999999999999644
No 122
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.27 E-value=4.8e-06 Score=100.75 Aligned_cols=117 Identities=20% Similarity=0.277 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIK 137 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~ 137 (822)
..|.|+|+|+.++||||||++|.+..+.....+..|.-.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i----------------------------------------- 281 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKI----------------------------------------- 281 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCcccccc-----------------------------------------
Confidence 678999999999999999999998776521111111100
Q ss_pred HHHHHHHhccCCccCCCceEEEEee-cCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc
Q 003415 138 SRTEALLKKTKTSVSPKPIVMRAEY-AHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE 216 (822)
Q Consensus 138 ~a~e~~l~~~g~~fS~~~i~L~Ie~-p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D 216 (822)
++ ..+.+.. .....++|+||||. +....|...|+...+.+| +|++++..
T Consensus 282 ------------~~----~~v~~~~~~~~~kItfiDTPGh-------------e~F~~mr~rg~~~aDiaI-LVVDA~dG 331 (742)
T CHL00189 282 ------------GA----YEVEFEYKDENQKIVFLDTPGH-------------EAFSSMRSRGANVTDIAI-LIIAADDG 331 (742)
T ss_pred ------------ce----EEEEEEecCCceEEEEEECCcH-------------HHHHHHHHHHHHHCCEEE-EEEECcCC
Confidence 00 0111111 12357999999995 234566777888888554 45577655
Q ss_pred cchHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 217 WCSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 217 ~~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
...+. ...++.+...+.+.|+|+||+|+.
T Consensus 332 v~~QT-~E~I~~~k~~~iPiIVViNKiDl~ 360 (742)
T CHL00189 332 VKPQT-IEAINYIQAANVPIIVAINKIDKA 360 (742)
T ss_pred CChhh-HHHHHHHHhcCceEEEEEECCCcc
Confidence 44332 233333444568899999999984
No 123
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.25 E-value=1.7e-05 Score=81.09 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=23.1
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|||||+.++||||||+.+++-.|+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~ 26 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFS 26 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5899999999999999999988775
No 124
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.25 E-value=7.4e-06 Score=81.15 Aligned_cols=25 Identities=40% Similarity=0.469 Sum_probs=23.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
||+++|++++||||++..+++-.|+
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~ 25 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSL 25 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCc
Confidence 7999999999999999999987665
No 125
>PLN03110 Rab GTPase; Provisional
Probab=98.25 E-value=1.5e-05 Score=82.85 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=45.6
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccc--h-HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWC--S-SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~--n-q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+|+||- +....+...|++..+ ++|+|.+.+..-. + ..|+..++...+.+...|+|.||
T Consensus 61 ~~l~l~Dt~G~-------------~~~~~~~~~~~~~~~-~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK 126 (216)
T PLN03110 61 VKAQIWDTAGQ-------------ERYRAITSAYYRGAV-GALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNK 126 (216)
T ss_pred EEEEEEECCCc-------------HHHHHHHHHHhCCCC-EEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 36789999993 234567788898776 4555565543221 1 24666677666667889999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 127 ~Dl~ 130 (216)
T PLN03110 127 SDLN 130 (216)
T ss_pred hhcc
Confidence 9984
No 126
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.25 E-value=4.1e-06 Score=90.31 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=45.2
Q ss_pred EEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcE
Q 003415 157 VMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRT 236 (822)
Q Consensus 157 ~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RT 236 (822)
.+.+++. -..+.|+||||... ....+..+++..+.+|+ |+++...+..+. ..+.+..+..+.+.
T Consensus 63 ~~~~~~~-~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~~Il-Vvda~~g~~~~~-~~i~~~~~~~~~P~ 126 (267)
T cd04169 63 VMQFEYR-DCVINLLDTPGHED-------------FSEDTYRTLTAVDSAVM-VIDAAKGVEPQT-RKLFEVCRLRGIPI 126 (267)
T ss_pred EEEEeeC-CEEEEEEECCCchH-------------HHHHHHHHHHHCCEEEE-EEECCCCccHHH-HHHHHHHHhcCCCE
Confidence 3344443 35789999999632 12234566777775544 667765554332 22333333446789
Q ss_pred EEEeeCCCcc
Q 003415 237 VIVVSKFDNR 246 (822)
Q Consensus 237 IgViTK~D~~ 246 (822)
|+|+||.|+.
T Consensus 127 iivvNK~D~~ 136 (267)
T cd04169 127 ITFINKLDRE 136 (267)
T ss_pred EEEEECCccC
Confidence 9999999973
No 127
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.24 E-value=6e-06 Score=85.54 Aligned_cols=66 Identities=24% Similarity=0.207 Sum_probs=42.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
..++|+||||... ....+..|+...+.+ ++|+++......+. .++.+.+...+...|+|+||.|+
T Consensus 71 ~~i~iiDtpG~~~-------------f~~~~~~~~~~aD~~-llVvD~~~~~~~~~-~~~~~~~~~~~~p~iiviNK~D~ 135 (213)
T cd04167 71 YLFNIIDTPGHVN-------------FMDEVAAALRLSDGV-VLVVDVVEGVTSNT-ERLIRHAILEGLPIVLVINKIDR 135 (213)
T ss_pred EEEEEEECCCCcc-------------hHHHHHHHHHhCCEE-EEEEECCCCCCHHH-HHHHHHHHHcCCCEEEEEECccc
Confidence 5699999999642 124466777777754 55556654443322 23333333346889999999998
Q ss_pred c
Q 003415 246 R 246 (822)
Q Consensus 246 ~ 246 (822)
+
T Consensus 136 ~ 136 (213)
T cd04167 136 L 136 (213)
T ss_pred C
Confidence 6
No 128
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.23 E-value=8.1e-06 Score=80.83 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=42.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhC-CCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREID-PTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~D-p~g~RTIgViT 241 (822)
..+.|+|+||.-. .-..+...|+++.+.+|++ .+.++.-.-+ .|++.++... ....+.|.|.|
T Consensus 51 ~~~~i~Dt~G~~~------------~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~n 117 (170)
T cd04115 51 IKVQLWDTAGQER------------FRKSMVQHYYRNVHAVVFV-YDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGN 117 (170)
T ss_pred EEEEEEeCCChHH------------HHHhhHHHhhcCCCEEEEE-EECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 4678999999421 1124677888888876664 4444322222 3444444432 34578999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 118 K~Dl~ 122 (170)
T cd04115 118 KCDLR 122 (170)
T ss_pred Cccch
Confidence 99984
No 129
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.23 E-value=1.9e-05 Score=81.89 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=24.0
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-.|+|||++++||||||+.|++..|+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~ 28 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFA 28 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 37999999999999999999998876
No 130
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.22 E-value=8.6e-06 Score=75.58 Aligned_cols=69 Identities=13% Similarity=-0.019 Sum_probs=43.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHH----HHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWL----DAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il----~lar~~Dp~g~RTIgViT 241 (822)
..++++|+||..... .....++.+.+ .+++|++++......... .........+...|+|+|
T Consensus 45 ~~~~l~D~~g~~~~~-------------~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~n 110 (157)
T cd00882 45 VKLQIWDTAGQERFR-------------SLRRLYYRGAD-GIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGN 110 (157)
T ss_pred EEEEEEecCChHHHH-------------hHHHHHhcCCC-EEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEe
Confidence 578999999975432 12256677777 555555666544433322 233334455799999999
Q ss_pred CCCcccc
Q 003415 242 KFDNRLK 248 (822)
Q Consensus 242 K~D~~~~ 248 (822)
|.|+...
T Consensus 111 k~D~~~~ 117 (157)
T cd00882 111 KIDLPEE 117 (157)
T ss_pred ccccccc
Confidence 9998544
No 131
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.22 E-value=1.2e-05 Score=80.30 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=42.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc--cch-HHHHHHH-HHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE--WCS-SLWLDAI-REIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D--~~n-q~il~la-r~~Dp~g~RTIgViT 241 (822)
.++.|+||||.. ....+...|++..+ ++++|.++++. +.+ ..|++.. +...|.....|+|.|
T Consensus 49 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad-~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgn 114 (170)
T cd04108 49 FSLQLWDTAGQE-------------RFKCIASTYYRGAQ-AIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGT 114 (170)
T ss_pred EEEEEEeCCChH-------------HHHhhHHHHhcCCC-EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 468899999962 23456678888887 55556666532 211 2244433 334455456799999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 115 K~Dl~ 119 (170)
T cd04108 115 KKDLS 119 (170)
T ss_pred ChhcC
Confidence 99984
No 132
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.22 E-value=7.6e-06 Score=97.26 Aligned_cols=115 Identities=19% Similarity=0.221 Sum_probs=71.3
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
...|.|+++|+.++||||||++|.+..|.....+..|.-
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~----------------------------------------- 123 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQH----------------------------------------- 123 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeec-----------------------------------------
Confidence 467999999999999999999999877653211111100
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE 216 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D 216 (822)
.-...++.++...++|+||||.- ....|..++....+.+|| |++++..
T Consensus 124 ------------------ig~~~v~~~~~~~i~~iDTPGhe-------------~F~~~r~rga~~aDiaIL-VVda~dg 171 (587)
T TIGR00487 124 ------------------IGAYHVENEDGKMITFLDTPGHE-------------AFTSMRARGAKVTDIVVL-VVAADDG 171 (587)
T ss_pred ------------------ceEEEEEECCCcEEEEEECCCCc-------------chhhHHHhhhccCCEEEE-EEECCCC
Confidence 00011122222378999999952 123455677777775555 5577654
Q ss_pred cchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 217 WCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 217 ~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
+..|. ...++.....+.+.|+|+||.|+
T Consensus 172 v~~qT-~e~i~~~~~~~vPiIVviNKiDl 199 (587)
T TIGR00487 172 VMPQT-IEAISHAKAANVPIIVAINKIDK 199 (587)
T ss_pred CCHhH-HHHHHHHHHcCCCEEEEEECccc
Confidence 43332 33333344446789999999998
No 133
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.22 E-value=2.2e-05 Score=79.07 Aligned_cols=67 Identities=24% Similarity=0.231 Sum_probs=43.1
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+|+||.. ....+...|+++.+.+|+++ +.++.-.- ..|+...+...+.....|+|.||
T Consensus 49 ~~~~i~Dt~g~~-------------~~~~~~~~~~~~~d~iilv~-d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK 114 (188)
T cd04125 49 IKLQIWDTNGQE-------------RFRSLNNSYYRGAHGYLLVY-DVTDQESFENLKFWINEINRYARENVIKVIVANK 114 (188)
T ss_pred EEEEEEECCCcH-------------HHHhhHHHHccCCCEEEEEE-ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 357899999942 23456788888888555554 44422221 12455555555555778999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 115 ~Dl~ 118 (188)
T cd04125 115 SDLV 118 (188)
T ss_pred CCCc
Confidence 9985
No 134
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.22 E-value=6.5e-06 Score=97.91 Aligned_cols=132 Identities=21% Similarity=0.301 Sum_probs=74.7
Q ss_pred CCCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHH
Q 003415 56 KLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADI 135 (822)
Q Consensus 56 ~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~ 135 (822)
.+..|.|+++|+.++||||||++|.|..+.....|..|+.- +. .+ .+.+ .
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~i-------g~-------~~------------~~~~----~ 52 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHI-------GA-------TE------------VPID----V 52 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEee-------ce-------ee------------cccc----c
Confidence 45789999999999999999999998765422222222210 00 00 0000 0
Q ss_pred HHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc
Q 003415 136 IKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV 215 (822)
Q Consensus 136 I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~ 215 (822)
+.. ..+..+. .+.+++. ++.++|+||||.- ....+...++...+ ++++|++++.
T Consensus 53 ~~~-------~~~~~~~--~~~~~~~---~~~i~~iDTPG~e-------------~f~~~~~~~~~~aD-~~IlVvDa~~ 106 (586)
T PRK04004 53 IEK-------IAGPLKK--PLPIKLK---IPGLLFIDTPGHE-------------AFTNLRKRGGALAD-IAILVVDINE 106 (586)
T ss_pred ccc-------ccceecc--ccccccc---cCCEEEEECCChH-------------HHHHHHHHhHhhCC-EEEEEEECCC
Confidence 000 0000000 0112222 3569999999962 23345556777776 5666777776
Q ss_pred ccchHH--HHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 216 EWCSSL--WLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 216 D~~nq~--il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
.+..+. .+.+++. .+.+.|.|+||+|+.
T Consensus 107 g~~~qt~e~i~~~~~---~~vpiIvviNK~D~~ 136 (586)
T PRK04004 107 GFQPQTIEAINILKR---RKTPFVVAANKIDRI 136 (586)
T ss_pred CCCHhHHHHHHHHHH---cCCCEEEEEECcCCc
Confidence 554443 3444443 467899999999984
No 135
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.22 E-value=6.6e-06 Score=88.37 Aligned_cols=66 Identities=14% Similarity=0.184 Sum_probs=41.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
..++||||||... ....+..++...+ .+++|++++.....+. ..+.+.++-.+.+.+.|+||+|+
T Consensus 64 ~~i~liDtPG~~~-------------f~~~~~~~l~~aD-~~i~Vvd~~~g~~~~~-~~~~~~~~~~~~p~iivvNK~D~ 128 (268)
T cd04170 64 HKINLIDTPGYAD-------------FVGETRAALRAAD-AALVVVSAQSGVEVGT-EKLWEFADEAGIPRIIFINKMDR 128 (268)
T ss_pred EEEEEEECcCHHH-------------HHHHHHHHHHHCC-EEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECCcc
Confidence 5799999999742 1233456666666 4555666665443332 23333344457889999999998
Q ss_pred c
Q 003415 246 R 246 (822)
Q Consensus 246 ~ 246 (822)
.
T Consensus 129 ~ 129 (268)
T cd04170 129 E 129 (268)
T ss_pred C
Confidence 4
No 136
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.21 E-value=6.2e-06 Score=83.73 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=39.1
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCcEEEEeeC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~RTIgViTK 242 (822)
...++|+||||.. ..++.+. .++...+ .+++|+++......+. .+.++... +...|+|+||
T Consensus 67 ~~~~~i~DtpG~~------------~~~~~~~-~~~~~~d-~vi~VvD~~~~~~~~~~~~~~~~~~~---~~~~iiv~NK 129 (192)
T cd01889 67 NLQITLVDCPGHA------------SLIRTII-GGAQIID-LMLLVVDATKGIQTQTAECLVIGEIL---CKKLIVVLNK 129 (192)
T ss_pred CceEEEEECCCcH------------HHHHHHH-HHHhhCC-EEEEEEECCCCccHHHHHHHHHHHHc---CCCEEEEEEC
Confidence 3579999999962 1222222 3333444 5666777765443332 23333332 5689999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 130 ~Dl~ 133 (192)
T cd01889 130 IDLI 133 (192)
T ss_pred cccC
Confidence 9985
No 137
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.21 E-value=7.8e-06 Score=80.96 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=21.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
+|+++|+.++|||||+++|.|..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~ 25 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY 25 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 69999999999999999999853
No 138
>PTZ00369 Ras-like protein; Provisional
Probab=98.21 E-value=4.6e-05 Score=77.17 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..|+|||+.++|||||++.+.+-.|+
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~ 31 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFI 31 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 58999999999999999999987775
No 139
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.21 E-value=1.3e-05 Score=80.04 Aligned_cols=67 Identities=10% Similarity=0.047 Sum_probs=40.8
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch----HHHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS----SLWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n----q~il~lar~~Dp~g~RTIgViT 241 (822)
..+.|+|+||.. ....+...|++..+.+ +.|+|++..-.- ..+.++.+..+....+.+.|+|
T Consensus 59 ~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~v-i~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~N 124 (174)
T cd04153 59 IRFLMWDIGGQE-------------SLRSSWNTYYTNTDAV-ILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLAN 124 (174)
T ss_pred eEEEEEECCCCH-------------HHHHHHHHHhhcCCEE-EEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEE
Confidence 468899999962 2345556788888844 555566533111 1123333322223578899999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 125 K~Dl~ 129 (174)
T cd04153 125 KQDLK 129 (174)
T ss_pred CCCCC
Confidence 99983
No 140
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.19 E-value=5e-06 Score=88.65 Aligned_cols=77 Identities=17% Similarity=0.121 Sum_probs=54.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEE--EEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILV--FLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIIL--aVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~ 243 (822)
..+++||+||+.++.-+ -+..+.+.++++.|+.+.++++- ++++++..+...+ ...+..+...+-.-..|+||+
T Consensus 183 ~~~~~vDlPG~~~a~y~---~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D-~~~i~~~ge~~VP~t~vfTK~ 258 (320)
T KOG2486|consen 183 KSWYEVDLPGYGRAGYG---FELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTD-NPEIAWLGENNVPMTSVFTKC 258 (320)
T ss_pred ceEEEEecCCcccccCC---ccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCC-hHHHHHHhhcCCCeEEeeehh
Confidence 57899999998776543 35566788999999988776643 3456666665544 223333444578889999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 259 DK~ 261 (320)
T KOG2486|consen 259 DKQ 261 (320)
T ss_pred hhh
Confidence 994
No 141
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.18 E-value=1.5e-05 Score=84.16 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
+|+++|.+|+|||||+++|+|...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~ 25 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS 25 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999999863
No 142
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.18 E-value=6.4e-06 Score=77.75 Aligned_cols=26 Identities=46% Similarity=0.663 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
+.|+++|..++|||||+++|++..++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~ 27 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFI 27 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 57999999999999999999998865
No 143
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.18 E-value=1.1e-05 Score=81.37 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=41.0
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.|.|+|+||.-. ...+...|+.+.+ ++++|.+.+..-.- ..|+..++...+ +.+.|.|.||.
T Consensus 51 ~l~i~D~~G~~~-------------~~~~~~~~~~~~d-~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK~ 115 (193)
T cd04118 51 TLGIWDTAGSER-------------YEAMSRIYYRGAK-AAIVCYDLTDSSSFERAKFWVKELQNLEE-HCKIYLCGTKS 115 (193)
T ss_pred EEEEEECCCchh-------------hhhhhHhhcCCCC-EEEEEEECCCHHHHHHHHHHHHHHHhcCC-CCCEEEEEEcc
Confidence 478999999521 2345567787776 55555555432111 135555555544 57899999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 116 Dl~ 118 (193)
T cd04118 116 DLI 118 (193)
T ss_pred ccc
Confidence 984
No 144
>PLN03118 Rab family protein; Provisional
Probab=98.18 E-value=2.1e-05 Score=81.15 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.4
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+|+|||+.++|||||+++|++-.+.
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~~ 40 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSVE 40 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCC
Confidence 48999999999999999999987663
No 145
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.17 E-value=1.9e-05 Score=78.55 Aligned_cols=67 Identities=13% Similarity=0.052 Sum_probs=41.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHH----HHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLD----AIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~----lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||.. ..+.+...|+++.+ .+++|+|+++.-.-..+.+ +++.....+.+.|.|.|
T Consensus 53 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~a~-~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 118 (168)
T cd04149 53 VKFNVWDVGGQD-------------KIRPLWRHYYTGTQ-GLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFAN 118 (168)
T ss_pred EEEEEEECCCCH-------------HHHHHHHHHhccCC-EEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEE
Confidence 458999999962 23455677888888 5555556654322222222 32221123578999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 119 K~Dl~ 123 (168)
T cd04149 119 KQDLP 123 (168)
T ss_pred CcCCc
Confidence 99984
No 146
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.17 E-value=8.4e-06 Score=99.43 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=42.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
..++|+||||... ...|+..++...+ ++++|++++..+..+. ...++.++..+.+.|+|+||+|+
T Consensus 337 ~~ItfiDTPGhe~-------------F~~m~~rga~~aD-iaILVVdAddGv~~qT-~e~i~~a~~~~vPiIVviNKiDl 401 (787)
T PRK05306 337 GKITFLDTPGHEA-------------FTAMRARGAQVTD-IVVLVVAADDGVMPQT-IEAINHAKAAGVPIIVAINKIDK 401 (787)
T ss_pred EEEEEEECCCCcc-------------chhHHHhhhhhCC-EEEEEEECCCCCCHhH-HHHHHHHHhcCCcEEEEEECccc
Confidence 4689999999521 2345667777777 4455557765544333 23333344456789999999998
No 147
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.17 E-value=1.9e-05 Score=81.82 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=41.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCC---CCCcEEEE
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDP---TFRRTVIV 239 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp---~g~RTIgV 239 (822)
..+.|.|+||. +....+...|+.+.+.||+ |.+.++.-+- ..|+..+++.-+ .....|+|
T Consensus 50 ~~~~i~Dt~G~-------------~~~~~l~~~~~~~ad~iil-V~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilV 115 (215)
T cd04109 50 VTLQVWDIGGQ-------------SIGGKMLDKYIYGAHAVFL-VYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLV 115 (215)
T ss_pred EEEEEEECCCc-------------HHHHHHHHHHhhcCCEEEE-EEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEE
Confidence 45789999993 1335677889998885555 5555432111 124455554432 23457899
Q ss_pred eeCCCcc
Q 003415 240 VSKFDNR 246 (822)
Q Consensus 240 iTK~D~~ 246 (822)
.||.|+.
T Consensus 116 gNK~DL~ 122 (215)
T cd04109 116 GNKTDLE 122 (215)
T ss_pred EECcccc
Confidence 9999985
No 148
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.16 E-value=9.5e-06 Score=79.45 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=23.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|+|+|+.++|||||+++|++..|+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~ 26 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP 26 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999999999885
No 149
>PLN03108 Rab family protein; Provisional
Probab=98.16 E-value=3.4e-05 Score=79.86 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=41.0
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEeeCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.+.|+||||.. ....+...|+...+.+| +|.+.+..-.-+ .++..++.......+.|.|.||.
T Consensus 56 ~l~l~Dt~G~~-------------~~~~~~~~~~~~ad~~v-lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~ 121 (210)
T PLN03108 56 KLQIWDTAGQE-------------SFRSITRSYYRGAAGAL-LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121 (210)
T ss_pred EEEEEeCCCcH-------------HHHHHHHHHhccCCEEE-EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 57899999942 23456678888777555 444544321111 23443444444467899999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 122 Dl~ 124 (210)
T PLN03108 122 DLA 124 (210)
T ss_pred cCc
Confidence 984
No 150
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.16 E-value=1.9e-05 Score=77.06 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|+++|++++||||+++.+.+-.|+
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~ 27 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFI 27 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 6999999999999999999987775
No 151
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.15 E-value=9.8e-06 Score=96.42 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=42.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCc-EEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRR-TVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~R-TIgViTK 242 (822)
..++|||+||. ...+.+| ..++.+.+ ++++|++++..+..+. .+.+++.. +.+ .|+|+||
T Consensus 50 ~~v~~iDtPGh------------e~f~~~~-~~g~~~aD-~aILVVDa~~G~~~qT~ehl~il~~l---gi~~iIVVlNK 112 (581)
T TIGR00475 50 YRLGFIDVPGH------------EKFISNA-IAGGGGID-AALLVVDADEGVMTQTGEHLAVLDLL---GIPHTIVVITK 112 (581)
T ss_pred EEEEEEECCCH------------HHHHHHH-HhhhccCC-EEEEEEECCCCCcHHHHHHHHHHHHc---CCCeEEEEEEC
Confidence 57899999994 1233444 45667777 5566777776554443 34445443 455 9999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
+|+..
T Consensus 113 ~Dlv~ 117 (581)
T TIGR00475 113 ADRVN 117 (581)
T ss_pred CCCCC
Confidence 99953
No 152
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.15 E-value=3.5e-05 Score=77.01 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=42.9
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHh-CCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREI-DPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~-Dp~g~RTIgViT 241 (822)
..|.|+||||.. ..+.|...|+...+.+|+++- .++.-+-. .+....++. ...+.+.|.|.|
T Consensus 50 ~~l~i~Dt~G~~-------------~~~~l~~~~~~~~d~~ilv~d-~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgN 115 (172)
T cd04141 50 ALLDILDTAGQA-------------EFTAMRDQYMRCGEGFIICYS-VTDRHSFQEASEFKKLITRVRLTEDIPLVLVGN 115 (172)
T ss_pred EEEEEEeCCCch-------------hhHHHhHHHhhcCCEEEEEEE-CCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 368899999952 245677889988886666654 33222211 233444443 234689999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 116 K~Dl~ 120 (172)
T cd04141 116 KVDLE 120 (172)
T ss_pred Chhhh
Confidence 99984
No 153
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.15 E-value=2.1e-05 Score=81.10 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
-|+++|+.++|||||+++|+|..
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~ 24 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVW 24 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999874
No 154
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.14 E-value=1.5e-05 Score=81.46 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|+|||+.++||||||+++++-.|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~ 25 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE 25 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC
Confidence 4899999999999999999987765
No 155
>PLN03127 Elongation factor Tu; Provisional
Probab=98.13 E-value=1e-05 Score=93.37 Aligned_cols=130 Identities=14% Similarity=0.168 Sum_probs=75.5
Q ss_pred CCCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHH
Q 003415 56 KLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADI 135 (822)
Q Consensus 56 ~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~ 135 (822)
.-+...|+++|+..+|||||+++|+|..-. .+ -. +. . . |. .. +..++
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~-~g--~~-~~-~--~---------------------~~--~~--D~~~~- 104 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAE-EG--KA-KA-V--A---------------------FD--EI--DKAPE- 104 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHH-hh--cc-cc-e--e---------------------ec--cc--cCChh-
Confidence 334557999999999999999999875311 11 10 00 0 0 00 00 00011
Q ss_pred HHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc
Q 003415 136 IKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV 215 (822)
Q Consensus 136 I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~ 215 (822)
.. ..+++-+...+..+.. ..+++||||||.. +.+.+|+.... ..+ ++|+|++|..
T Consensus 105 ---E~-------~rGiTi~~~~~~~~~~-~~~i~~iDtPGh~------------~f~~~~~~g~~-~aD-~allVVda~~ 159 (447)
T PLN03127 105 ---EK-------ARGITIATAHVEYETA-KRHYAHVDCPGHA------------DYVKNMITGAA-QMD-GGILVVSAPD 159 (447)
T ss_pred ---Hh-------hcCceeeeeEEEEcCC-CeEEEEEECCCcc------------chHHHHHHHHh-hCC-EEEEEEECCC
Confidence 00 0244444444444443 3478999999973 24566665443 355 7777888887
Q ss_pred ccchHH--HHHHHHHhCCCCCc-EEEEeeCCCcc
Q 003415 216 EWCSSL--WLDAIREIDPTFRR-TVIVVSKFDNR 246 (822)
Q Consensus 216 D~~nq~--il~lar~~Dp~g~R-TIgViTK~D~~ 246 (822)
.+..|+ .+.+++.. +.+ .|+|+||+|++
T Consensus 160 g~~~qt~e~l~~~~~~---gip~iIvviNKiDlv 190 (447)
T PLN03127 160 GPMPQTKEHILLARQV---GVPSLVVFLNKVDVV 190 (447)
T ss_pred CCchhHHHHHHHHHHc---CCCeEEEEEEeeccC
Confidence 666553 44455543 566 47899999986
No 156
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.12 E-value=2.7e-05 Score=78.89 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=41.2
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhC---CCCCcEEEEe
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREID---PTFRRTVIVV 240 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~D---p~g~RTIgVi 240 (822)
.|.|+||||.. ....+...|++..+.+|++ .+.++.-+- ..++..+..+. +.....|.|.
T Consensus 48 ~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~~ilv-~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvg 113 (190)
T cd04144 48 MLEVLDTAGQE-------------EYTALRDQWIREGEGFILV-YSITSRSTFERVERFREQIQRVKDESAADVPIMIVG 113 (190)
T ss_pred EEEEEECCCch-------------hhHHHHHHHHHhCCEEEEE-EECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 58899999941 2345667788888855554 454432111 22444444433 2457899999
Q ss_pred eCCCcc
Q 003415 241 SKFDNR 246 (822)
Q Consensus 241 TK~D~~ 246 (822)
||.|+.
T Consensus 114 NK~Dl~ 119 (190)
T cd04144 114 NKCDKV 119 (190)
T ss_pred EChhcc
Confidence 999984
No 157
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.12 E-value=3.3e-05 Score=76.89 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=22.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|++||+.++|||||++.+++..|+
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~ 27 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFV 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc
Confidence 5899999999999999999987765
No 158
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.12 E-value=1.6e-05 Score=78.24 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=23.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|+|||++++||||||+++++-.|.
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~ 27 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFR 27 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 6899999999999999999988875
No 159
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.09 E-value=2.5e-05 Score=76.65 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|+|||+.++|||||++++++..|.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~ 25 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI 25 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc
Confidence 3899999999999999999976664
No 160
>CHL00071 tufA elongation factor Tu
Probab=98.09 E-value=1.3e-05 Score=91.57 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=44.0
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCc-EEEEee
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRR-TVIVVS 241 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~R-TIgViT 241 (822)
..+++||||||.. +.+..++.. +...+ ++++|++|...+..++ .+.++.. .+.+ .|+|+|
T Consensus 74 ~~~~~~iDtPGh~------------~~~~~~~~~-~~~~D-~~ilVvda~~g~~~qt~~~~~~~~~---~g~~~iIvvvN 136 (409)
T CHL00071 74 NRHYAHVDCPGHA------------DYVKNMITG-AAQMD-GAILVVSAADGPMPQTKEHILLAKQ---VGVPNIVVFLN 136 (409)
T ss_pred CeEEEEEECCChH------------HHHHHHHHH-HHhCC-EEEEEEECCCCCcHHHHHHHHHHHH---cCCCEEEEEEE
Confidence 3578999999942 355666544 34555 6777888887776653 4444444 3555 678999
Q ss_pred CCCccc
Q 003415 242 KFDNRL 247 (822)
Q Consensus 242 K~D~~~ 247 (822)
|+|+..
T Consensus 137 K~D~~~ 142 (409)
T CHL00071 137 KEDQVD 142 (409)
T ss_pred ccCCCC
Confidence 999963
No 161
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.09 E-value=3.9e-05 Score=75.74 Aligned_cols=68 Identities=19% Similarity=0.138 Sum_probs=41.1
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccc---hHHHHHHHHH-hCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWC---SSLWLDAIRE-IDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~---nq~il~lar~-~Dp~g~RTIgViT 241 (822)
..+.|+||||.- ....|...|++..+.+||++ +.++.-. ...+...+.. .+..+.+.|.|.|
T Consensus 49 ~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~vlv~-~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 114 (168)
T cd04177 49 CDLEILDTAGTE-------------QFTAMRELYIKSGQGFLLVY-SVTSEASLNELGELREQVLRIKDSDNVPMVLVGN 114 (168)
T ss_pred EEEEEEeCCCcc-------------cchhhhHHHHhhCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEE
Confidence 367899999952 12446777888777665554 4332211 1223333333 3445678899999
Q ss_pred CCCccc
Q 003415 242 KFDNRL 247 (822)
Q Consensus 242 K~D~~~ 247 (822)
|.|+..
T Consensus 115 K~D~~~ 120 (168)
T cd04177 115 KADLED 120 (168)
T ss_pred Chhccc
Confidence 999853
No 162
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.07 E-value=2.2e-05 Score=93.72 Aligned_cols=66 Identities=18% Similarity=0.136 Sum_probs=44.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
..+.|+||||... ...++..|++..+ .+++|++++.....+....+..... .+...|.|+||.|+
T Consensus 70 ~~l~liDTPG~~d-------------F~~~v~~~l~~aD-~aILVvDat~g~~~qt~~~~~~~~~-~~ipiIiViNKiDl 134 (595)
T TIGR01393 70 YVLNLIDTPGHVD-------------FSYEVSRSLAACE-GALLLVDAAQGIEAQTLANVYLALE-NDLEIIPVINKIDL 134 (595)
T ss_pred EEEEEEECCCcHH-------------HHHHHHHHHHhCC-EEEEEecCCCCCCHhHHHHHHHHHH-cCCCEEEEEECcCC
Confidence 4689999999742 3445678888887 5556668876665554322222122 35679999999998
Q ss_pred c
Q 003415 246 R 246 (822)
Q Consensus 246 ~ 246 (822)
.
T Consensus 135 ~ 135 (595)
T TIGR01393 135 P 135 (595)
T ss_pred C
Confidence 3
No 163
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.07 E-value=3.4e-05 Score=79.82 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=46.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..|.|.||+|- +..+.|...|+++.+.+||+ .|.++.-+- ..|+..+++..+.....|.|.||
T Consensus 49 v~l~iwDtaGq-------------e~~~~l~~~y~~~ad~iIlV-fDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK 114 (202)
T cd04120 49 IRLQIWDTAGQ-------------ERFNSITSAYYRSAKGIILV-YDITKKETFDDLPKWMKMIDKYASEDAELLLVGNK 114 (202)
T ss_pred EEEEEEeCCCc-------------hhhHHHHHHHhcCCCEEEEE-EECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 56789999994 23466778999999866664 444432111 23566666665667889999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 115 ~DL~ 118 (202)
T cd04120 115 LDCE 118 (202)
T ss_pred cccc
Confidence 9984
No 164
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.07 E-value=1.3e-05 Score=86.73 Aligned_cols=37 Identities=27% Similarity=0.254 Sum_probs=29.4
Q ss_pred EEEEcCCCCchhhHHHHHhCCcccccccccccccceE
Q 003415 62 IVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLI 98 (822)
Q Consensus 62 IVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~ 98 (822)
|++||.+|+|||||+|+|+|.+..+..-..||+-|..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~ 37 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV 37 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhcee
Confidence 5789999999999999999998753333457877754
No 165
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.06 E-value=1.4e-05 Score=97.13 Aligned_cols=81 Identities=16% Similarity=0.072 Sum_probs=51.9
Q ss_pred ccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHh
Q 003415 150 SVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREI 229 (822)
Q Consensus 150 ~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~ 229 (822)
+++-+.....++..+ ..++||||||...- ...+..++..-+ ++++|+++......++ ..+++.+
T Consensus 60 giti~~~~~~~~~~~-~~i~liDTPG~~~~-------------~~~~~~~l~~~D-~~ilVvda~~g~~~~~-~~~~~~~ 123 (689)
T TIGR00484 60 GITITSAATTVFWKG-HRINIIDTPGHVDF-------------TVEVERSLRVLD-GAVAVLDAVGGVQPQS-ETVWRQA 123 (689)
T ss_pred CCCEecceEEEEECC-eEEEEEECCCCcch-------------hHHHHHHHHHhC-EEEEEEeCCCCCChhH-HHHHHHH
Confidence 344444455565543 57999999998531 113566677666 6666777876665543 2333444
Q ss_pred CCCCCcEEEEeeCCCcc
Q 003415 230 DPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 230 Dp~g~RTIgViTK~D~~ 246 (822)
...+.+.|.|+||+|+.
T Consensus 124 ~~~~~p~ivviNK~D~~ 140 (689)
T TIGR00484 124 NRYEVPRIAFVNKMDKT 140 (689)
T ss_pred HHcCCCEEEEEECCCCC
Confidence 44578899999999985
No 166
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.05 E-value=1.8e-05 Score=78.06 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=22.5
Q ss_pred EEEEcCCCCchhhHHHHHhCCccc
Q 003415 62 IVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 62 IVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
|+|||+.++||||+++.+.+-.|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~ 24 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP 24 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC
Confidence 689999999999999999998886
No 167
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.05 E-value=1.1e-05 Score=95.06 Aligned_cols=74 Identities=12% Similarity=0.094 Sum_probs=48.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCC-CcEEEEEecCCcccch-HHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPP-HRILVFLQQSSVEWCS-SLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~-~sIILaVv~A~~D~~n-q~il~lar~~Dp~g~RTIgViTK~ 243 (822)
...+||||||+..-.... .+ +..+++|+.+. -.+|+.|+||++=--| .-.+++.. -|..+|.++|+.
T Consensus 50 ~~i~ivDLPG~YSL~~~S---~D----E~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE----~g~p~ilaLNm~ 118 (653)
T COG0370 50 HEIEIVDLPGTYSLTAYS---ED----EKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLE----LGIPMILALNMI 118 (653)
T ss_pred ceEEEEeCCCcCCCCCCC---ch----HHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHH----cCCCeEEEeccH
Confidence 458999999998764421 11 34567788643 3699999988742111 22344433 378899999999
Q ss_pred Ccccccc
Q 003415 244 DNRLKEF 250 (822)
Q Consensus 244 D~~~~~~ 250 (822)
|...+.+
T Consensus 119 D~A~~~G 125 (653)
T COG0370 119 DEAKKRG 125 (653)
T ss_pred hhHHhcC
Confidence 9864443
No 168
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.04 E-value=2.6e-05 Score=82.02 Aligned_cols=67 Identities=22% Similarity=0.236 Sum_probs=46.1
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D 244 (822)
...+.|+||||... ....+..++...+.+|| |+++......+. ..+++.+...+.+.|.|+||+|
T Consensus 72 ~~~i~iiDTPG~~~-------------f~~~~~~~l~~aD~~il-VvD~~~g~~~~t-~~~l~~~~~~~~p~ilviNKiD 136 (222)
T cd01885 72 EYLINLIDSPGHVD-------------FSSEVTAALRLCDGALV-VVDAVEGVCVQT-ETVLRQALKERVKPVLVINKID 136 (222)
T ss_pred ceEEEEECCCCccc-------------cHHHHHHHHHhcCeeEE-EEECCCCCCHHH-HHHHHHHHHcCCCEEEEEECCC
Confidence 35689999999742 23456788888885544 667776655443 3444444445788999999999
Q ss_pred cc
Q 003415 245 NR 246 (822)
Q Consensus 245 ~~ 246 (822)
+.
T Consensus 137 ~~ 138 (222)
T cd01885 137 RL 138 (222)
T ss_pred cc
Confidence 85
No 169
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.04 E-value=8.1e-05 Score=76.87 Aligned_cols=26 Identities=27% Similarity=0.562 Sum_probs=24.2
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
|.|+++|+.++|||||+..|.+..|+
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~ 26 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYR 26 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCC
Confidence 78999999999999999999988775
No 170
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.04 E-value=5.3e-05 Score=74.56 Aligned_cols=67 Identities=13% Similarity=0.060 Sum_probs=40.4
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHH----HHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLW----LDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~i----l~lar~~Dp~g~RTIgViT 241 (822)
..+.|.|+||.. ....+...|++..+.+ +.|.+++..-.-..+ .++.+.-.....+.+.|.|
T Consensus 44 ~~~~l~D~~G~~-------------~~~~~~~~~~~~ad~~-i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 109 (159)
T cd04150 44 ISFTVWDVGGQD-------------KIRPLWRHYFQNTQGL-IFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFAN 109 (159)
T ss_pred EEEEEEECCCCH-------------hHHHHHHHHhcCCCEE-EEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEE
Confidence 468999999962 2455667899998855 555555432111122 2222221112467899999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 110 K~Dl~ 114 (159)
T cd04150 110 KQDLP 114 (159)
T ss_pred CCCCC
Confidence 99983
No 171
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.04 E-value=4.5e-05 Score=76.49 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=23.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|+|+|+.++||||||+.+.+-.|+
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~ 26 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP 26 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC
Confidence 6899999999999999999998886
No 172
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.04 E-value=3.2e-05 Score=76.71 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|++||..++|||||+++|++..|.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~ 25 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM 25 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4899999999999999999987553
No 173
>PLN03126 Elongation factor Tu; Provisional
Probab=98.00 E-value=5.6e-05 Score=87.97 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=43.3
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCc-EEEEee
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRR-TVIVVS 241 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~R-TIgViT 241 (822)
...++|||+||.. +.+.+|+... ...+ +.++|++|...+..|. .+.++... |.+ .|.|+|
T Consensus 143 ~~~i~liDtPGh~------------~f~~~~~~g~-~~aD-~ailVVda~~G~~~qt~e~~~~~~~~---gi~~iIvvvN 205 (478)
T PLN03126 143 NRHYAHVDCPGHA------------DYVKNMITGA-AQMD-GAILVVSGADGPMPQTKEHILLAKQV---GVPNMVVFLN 205 (478)
T ss_pred CcEEEEEECCCHH------------HHHHHHHHHH-hhCC-EEEEEEECCCCCcHHHHHHHHHHHHc---CCCeEEEEEe
Confidence 3578999999962 2455554433 4555 5566778877766553 45555544 555 778999
Q ss_pred CCCccc
Q 003415 242 KFDNRL 247 (822)
Q Consensus 242 K~D~~~ 247 (822)
|+|+..
T Consensus 206 K~Dl~~ 211 (478)
T PLN03126 206 KQDQVD 211 (478)
T ss_pred cccccC
Confidence 999964
No 174
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.99 E-value=3.8e-05 Score=80.14 Aligned_cols=80 Identities=19% Similarity=0.190 Sum_probs=47.4
Q ss_pred ccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc-------ccchH--
Q 003415 150 SVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV-------EWCSS-- 220 (822)
Q Consensus 150 ~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~-------D~~nq-- 220 (822)
+++.+.....++.. ...++||||||... .+.. +..++...+ ++++|+++.. +...+
T Consensus 62 g~T~d~~~~~~~~~-~~~i~liDtpG~~~------------~~~~-~~~~~~~~d-~~i~VvDa~~~~~~~~~~~~~~~~ 126 (219)
T cd01883 62 GVTIDVGLAKFETE-KYRFTILDAPGHRD------------FVPN-MITGASQAD-VAVLVVDARKGEFEAGFEKGGQTR 126 (219)
T ss_pred ccCeecceEEEeeC-CeEEEEEECCChHH------------HHHH-HHHHhhhCC-EEEEEEECCCCccccccccccchH
Confidence 55555555555553 46899999999621 1222 234566666 5566777765 22222
Q ss_pred HHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 221 LWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 221 ~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
..+.+++... ..+.|+|+||.|+.
T Consensus 127 ~~~~~~~~~~--~~~iiivvNK~Dl~ 150 (219)
T cd01883 127 EHALLARTLG--VKQLIVAVNKMDDV 150 (219)
T ss_pred HHHHHHHHcC--CCeEEEEEEccccc
Confidence 2233443332 25788899999985
No 175
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.99 E-value=0.00013 Score=71.74 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=41.9
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViTK 242 (822)
..|.|.|+||-- ....+...|+.+.+.+++ |.+.++.-+-. .|+..++...+.....|.|.||
T Consensus 49 ~~l~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~-v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK 114 (161)
T cd04117 49 VRIQIWDTAGQE-------------RYQTITKQYYRRAQGIFL-VYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNK 114 (161)
T ss_pred EEEEEEeCCCcH-------------hHHhhHHHHhcCCcEEEE-EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 357899999942 234567788888875554 44444322212 2344444444556788999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 115 ~Dl~ 118 (161)
T cd04117 115 ADEE 118 (161)
T ss_pred cccc
Confidence 9984
No 176
>PRK12739 elongation factor G; Reviewed
Probab=97.99 E-value=1.9e-05 Score=95.90 Aligned_cols=81 Identities=17% Similarity=0.084 Sum_probs=53.7
Q ss_pred ccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHh
Q 003415 150 SVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREI 229 (822)
Q Consensus 150 ~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~ 229 (822)
+++-+...+.++. ....++||||||... . ...+..++..-+ .+++|++|...+..++ ..+++.+
T Consensus 58 giti~~~~~~~~~-~~~~i~liDTPG~~~------------f-~~e~~~al~~~D-~~ilVvDa~~g~~~qt-~~i~~~~ 121 (691)
T PRK12739 58 GITITSAATTCFW-KGHRINIIDTPGHVD------------F-TIEVERSLRVLD-GAVAVFDAVSGVEPQS-ETVWRQA 121 (691)
T ss_pred CCCccceeEEEEE-CCEEEEEEcCCCHHH------------H-HHHHHHHHHHhC-eEEEEEeCCCCCCHHH-HHHHHHH
Confidence 4454444555555 345799999999742 1 123566666666 6777888887776654 3444444
Q ss_pred CCCCCcEEEEeeCCCcc
Q 003415 230 DPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 230 Dp~g~RTIgViTK~D~~ 246 (822)
...+.+.|.|+||+|+.
T Consensus 122 ~~~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 122 DKYGVPRIVFVNKMDRI 138 (691)
T ss_pred HHcCCCEEEEEECCCCC
Confidence 45578899999999985
No 177
>PTZ00258 GTP-binding protein; Provisional
Probab=97.99 E-value=3.2e-05 Score=87.49 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=35.7
Q ss_pred CCCCCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEE
Q 003415 54 GEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQ 100 (822)
Q Consensus 54 ~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~ 100 (822)
+....-.+|++||.+|+|||||+|+|+|....+..-.-||+-|..-.
T Consensus 16 ~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~ 62 (390)
T PTZ00258 16 GRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTAR 62 (390)
T ss_pred ccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEE
Confidence 33455669999999999999999999998765333345788876543
No 178
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.97 E-value=7.5e-05 Score=75.49 Aligned_cols=66 Identities=11% Similarity=0.013 Sum_probs=39.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH----HHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL----WLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~----il~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||.- ..+.+...|++..+.+|++ +++++.-.-.. +.++.+.-.-...+.|.|.|
T Consensus 61 ~~~~l~D~~G~~-------------~~~~~~~~~~~~ad~iI~v-~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~N 126 (182)
T PTZ00133 61 LKFTMWDVGGQD-------------KLRPLWRHYYQNTNGLIFV-VDSNDRERIGDAREELERMLSEDELRDAVLLVFAN 126 (182)
T ss_pred EEEEEEECCCCH-------------hHHHHHHHHhcCCCEEEEE-EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEe
Confidence 468999999952 3456778899999865555 55442111111 22222211112467899999
Q ss_pred CCCc
Q 003415 242 KFDN 245 (822)
Q Consensus 242 K~D~ 245 (822)
|.|+
T Consensus 127 K~Dl 130 (182)
T PTZ00133 127 KQDL 130 (182)
T ss_pred CCCC
Confidence 9998
No 179
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.96 E-value=2.9e-05 Score=88.62 Aligned_cols=80 Identities=18% Similarity=0.166 Sum_probs=50.6
Q ss_pred ccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHH
Q 003415 150 SVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIR 227 (822)
Q Consensus 150 ~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar 227 (822)
+++-+.....++..+ ..++||||||.. +.+.+|+.. +...+ ++|+|++|...+..|+ .+.+++
T Consensus 65 giTid~~~~~~~~~~-~~~~liDtPGh~------------~f~~~~~~~-~~~aD-~allVVda~~G~~~qt~~~~~~~~ 129 (406)
T TIGR02034 65 GITIDVAYRYFSTDK-RKFIVADTPGHE------------QYTRNMATG-ASTAD-LAVLLVDARKGVLEQTRRHSYIAS 129 (406)
T ss_pred CcCeEeeeEEEccCC-eEEEEEeCCCHH------------HHHHHHHHH-HhhCC-EEEEEEECCCCCccccHHHHHHHH
Confidence 455444444444433 479999999942 244555443 45556 6667778877766553 456666
Q ss_pred HhCCCCCcEEEEeeCCCcc
Q 003415 228 EIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 228 ~~Dp~g~RTIgViTK~D~~ 246 (822)
.+. ..+.|.|+||+|+.
T Consensus 130 ~~~--~~~iivviNK~D~~ 146 (406)
T TIGR02034 130 LLG--IRHVVLAVNKMDLV 146 (406)
T ss_pred HcC--CCcEEEEEEecccc
Confidence 653 34678899999985
No 180
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.96 E-value=4.6e-05 Score=91.27 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=42.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~RTIgViTK~ 243 (822)
..++|||+||. ...+++|+ .++...+ ++++|++++..+..|+ .+.+++... ....|.|+||+
T Consensus 51 ~~i~~IDtPGh------------e~fi~~m~-~g~~~~D-~~lLVVda~eg~~~qT~ehl~il~~lg--i~~iIVVlNKi 114 (614)
T PRK10512 51 RVLGFIDVPGH------------EKFLSNML-AGVGGID-HALLVVACDDGVMAQTREHLAILQLTG--NPMLTVALTKA 114 (614)
T ss_pred cEEEEEECCCH------------HHHHHHHH-HHhhcCC-EEEEEEECCCCCcHHHHHHHHHHHHcC--CCeEEEEEECC
Confidence 45799999995 12445554 4566776 5556668887766554 455555442 23457999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 115 Dlv 117 (614)
T PRK10512 115 DRV 117 (614)
T ss_pred ccC
Confidence 985
No 181
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.96 E-value=6.6e-05 Score=77.09 Aligned_cols=115 Identities=26% Similarity=0.340 Sum_probs=78.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHHHH
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKSRT 140 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~a~ 140 (822)
+|||+|+.|+|||||+++|.+..|+... -|+.......
T Consensus 7 kivv~G~~g~GKTtl~~~l~~~~~~~~~------~~t~~~~~~~------------------------------------ 44 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVGDEFPEGY------PPTIGNLDPA------------------------------------ 44 (219)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccC------CCceeeeeEE------------------------------------
Confidence 7999999999999999999999987321 1211111000
Q ss_pred HHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCC---ccc
Q 003415 141 EALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSS---VEW 217 (822)
Q Consensus 141 e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~---~D~ 217 (822)
...........+.++||+|. +.++.+...|...++.+++++.... .+.
T Consensus 45 ----------------~~~~~~~~~~~~~~~Dt~gq-------------~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~ 95 (219)
T COG1100 45 ----------------KTIEPYRRNIKLQLWDTAGQ-------------EEYRSLRPEYYRGANGILIVYDSTLRESSDE 95 (219)
T ss_pred ----------------EEEEeCCCEEEEEeecCCCH-------------HHHHHHHHHHhcCCCEEEEEEecccchhhhH
Confidence 00000000235789999996 3567888999999998888876544 223
Q ss_pred chHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 218 CSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 218 ~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
....|...++...+.....|.|.||.|+.
T Consensus 96 ~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (219)
T COG1100 96 LTEEWLEELRELAPDDVPILLVGNKIDLF 124 (219)
T ss_pred HHHHHHHHHHHhCCCCceEEEEecccccc
Confidence 33457777777777778999999999995
No 182
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.95 E-value=0.00015 Score=74.22 Aligned_cols=66 Identities=17% Similarity=0.344 Sum_probs=43.8
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViTK 242 (822)
..|.|.||||-- ....|...|.+..+. +|+|.+.++..+-. .|++.+++..| ....|.|-||
T Consensus 55 ~~l~iwDt~G~~-------------~~~~l~~~~~~~ad~-illVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK 119 (189)
T cd04121 55 VKLQLWDTSGQG-------------RFCTIFRSYSRGAQG-IILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNR 119 (189)
T ss_pred EEEEEEeCCCcH-------------HHHHHHHHHhcCCCE-EEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 468899999952 345677889988874 45555544332222 25555555545 5788999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 120 ~DL~ 123 (189)
T cd04121 120 LHLA 123 (189)
T ss_pred ccch
Confidence 9984
No 183
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.95 E-value=3.9e-05 Score=76.08 Aligned_cols=66 Identities=11% Similarity=0.040 Sum_probs=40.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViTK 242 (822)
..|.++||||.-.. ..+...|+...+.+ ++|.+.+...+-+ .++..++...+ ....|+|.||
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK 113 (166)
T cd00877 49 IRFNVWDTAGQEKF-------------GGLRDGYYIGGQCA-IIMFDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNK 113 (166)
T ss_pred EEEEEEECCCChhh-------------ccccHHHhcCCCEE-EEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEc
Confidence 46789999996321 12335567777744 4455555332222 24444554444 6888999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 114 ~Dl~ 117 (166)
T cd00877 114 VDIK 117 (166)
T ss_pred hhcc
Confidence 9985
No 184
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.94 E-value=3.8e-05 Score=87.99 Aligned_cols=80 Identities=18% Similarity=0.166 Sum_probs=48.0
Q ss_pred ccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc--ccchH--HHHHH
Q 003415 150 SVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV--EWCSS--LWLDA 225 (822)
Q Consensus 150 ~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~--D~~nq--~il~l 225 (822)
+++-+.....++.. ...++|+||||... .+.+++ ..+...+ ++|+|++++. .+..+ ..+.+
T Consensus 69 G~T~d~~~~~~~~~-~~~i~liDtpG~~~------------~~~~~~-~~~~~aD-~~ilVvDa~~~~~~~~~~~~~~~~ 133 (425)
T PRK12317 69 GVTIDLAHKKFETD-KYYFTIVDCPGHRD------------FVKNMI-TGASQAD-AAVLVVAADDAGGVMPQTREHVFL 133 (425)
T ss_pred CccceeeeEEEecC-CeEEEEEECCCccc------------chhhHh-hchhcCC-EEEEEEEcccCCCCCcchHHHHHH
Confidence 45555555555543 35799999999521 222332 3355666 6666778876 45443 24445
Q ss_pred HHHhCCCCCcEEEEeeCCCcc
Q 003415 226 IREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 226 ar~~Dp~g~RTIgViTK~D~~ 246 (822)
++... ..+.|.|+||+|+.
T Consensus 134 ~~~~~--~~~iivviNK~Dl~ 152 (425)
T PRK12317 134 ARTLG--INQLIVAINKMDAV 152 (425)
T ss_pred HHHcC--CCeEEEEEEccccc
Confidence 55442 14688999999985
No 185
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.94 E-value=5.4e-05 Score=74.78 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=24.0
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..|+|+|+.++|||||+..+.+-.|+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~ 27 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP 27 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 47999999999999999999998876
No 186
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.93 E-value=9.4e-05 Score=74.77 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=41.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHh----CCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREI----DPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~----Dp~g~RTIgViT 241 (822)
..+.|+|+||- +..+.+...|+++.+.||+ |.|+++.-.-..+......+ .....+.|.|.|
T Consensus 61 ~~~~i~D~~Gq-------------~~~~~~~~~~~~~a~~iI~-V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~N 126 (181)
T PLN00223 61 ISFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIF-VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
T ss_pred EEEEEEECCCC-------------HHHHHHHHHHhccCCEEEE-EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEE
Confidence 46889999993 2356677889999885554 55555322222222222222 123578999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 127 K~Dl~ 131 (181)
T PLN00223 127 KQDLP 131 (181)
T ss_pred CCCCC
Confidence 99983
No 187
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.93 E-value=5.7e-05 Score=78.97 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.1
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|+|||+.++|||||++.+++-.|.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~ 26 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYD 26 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcC
Confidence 6899999999999999999866553
No 188
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.93 E-value=4.6e-05 Score=90.85 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=47.7
Q ss_pred EEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH--HHHHHHHHhCCCCCc
Q 003415 158 MRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS--LWLDAIREIDPTFRR 235 (822)
Q Consensus 158 L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq--~il~lar~~Dp~g~R 235 (822)
..+++. -..++||||||.. .....+..|++..+.+| +|++|...+..| .++..+.. .+.+
T Consensus 57 ~~v~~~-~~kinlIDTPGh~-------------DF~~ev~~~l~~aD~al-LVVDa~~G~~~qT~~~l~~a~~---~~ip 118 (594)
T TIGR01394 57 TAIRYN-GTKINIVDTPGHA-------------DFGGEVERVLGMVDGVL-LLVDASEGPMPQTRFVLKKALE---LGLK 118 (594)
T ss_pred EEEEEC-CEEEEEEECCCHH-------------HHHHHHHHHHHhCCEEE-EEEeCCCCCcHHHHHHHHHHHH---CCCC
Confidence 344443 3579999999962 23345678888888555 555776665444 35555555 3578
Q ss_pred EEEEeeCCCcc
Q 003415 236 TVIVVSKFDNR 246 (822)
Q Consensus 236 TIgViTK~D~~ 246 (822)
.|.|+||.|+.
T Consensus 119 ~IVviNKiD~~ 129 (594)
T TIGR01394 119 PIVVINKIDRP 129 (594)
T ss_pred EEEEEECCCCC
Confidence 89999999983
No 189
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.93 E-value=4.4e-05 Score=85.64 Aligned_cols=39 Identities=23% Similarity=0.188 Sum_probs=30.2
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCcccccccccccccceE
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLI 98 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~ 98 (822)
.+|.+||-+|+|||||+|+|+|.+..+..-..||+-|..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~ 41 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV 41 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceE
Confidence 589999999999999999999988432222357877743
No 190
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.92 E-value=0.00012 Score=78.28 Aligned_cols=25 Identities=36% Similarity=0.687 Sum_probs=23.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|+|||+.++||||||+.+++-+|+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~ 26 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE 26 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC
Confidence 5899999999999999999988886
No 191
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.92 E-value=5.7e-05 Score=90.29 Aligned_cols=65 Identities=18% Similarity=0.086 Sum_probs=43.4
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
..++|+||||... ....+..|++..+. +|+|++++..+..++...+.. ....+...|.|+||.|+
T Consensus 74 ~~lnLiDTPGh~d-------------F~~~v~~sl~~aD~-aILVVDas~gv~~qt~~~~~~-~~~~~lpiIvViNKiDl 138 (600)
T PRK05433 74 YILNLIDTPGHVD-------------FSYEVSRSLAACEG-ALLVVDASQGVEAQTLANVYL-ALENDLEIIPVLNKIDL 138 (600)
T ss_pred EEEEEEECCCcHH-------------HHHHHHHHHHHCCE-EEEEEECCCCCCHHHHHHHHH-HHHCCCCEEEEEECCCC
Confidence 4689999999742 23456778887774 556677876666554322211 11235779999999998
No 192
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.91 E-value=7.5e-05 Score=77.97 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=42.8
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|.||||.-. ...+...|++..+.+|++ .+.++...-. .|+..+++..+ +...|.|.||
T Consensus 62 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv-fD~~~~~s~~~i~~w~~~i~~~~~-~~piilvgNK 126 (219)
T PLN03071 62 IRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAIIM-FDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNK 126 (219)
T ss_pred EEEEEEECCCchh-------------hhhhhHHHcccccEEEEE-EeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEc
Confidence 4788999999522 235667788888855554 5544332222 35555555544 5889999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 127 ~Dl~ 130 (219)
T PLN03071 127 VDVK 130 (219)
T ss_pred hhhh
Confidence 9984
No 193
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.91 E-value=8.5e-05 Score=74.38 Aligned_cols=67 Identities=10% Similarity=0.063 Sum_probs=40.8
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHh----CCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREI----DPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~----Dp~g~RTIgViT 241 (822)
..+.|+|+||.. ..+.+...|+++.+.||+ |+|+++.-.-..+.+...++ .......+.|.|
T Consensus 57 ~~l~l~D~~G~~-------------~~~~~~~~~~~~ad~ii~-v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~N 122 (175)
T smart00177 57 ISFTVWDVGGQD-------------KIRPLWRHYYTNTQGLIF-VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFAN 122 (175)
T ss_pred EEEEEEECCCCh-------------hhHHHHHHHhCCCCEEEE-EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEe
Confidence 468899999952 235567889999985555 55554321111222222222 123467899999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 123 K~Dl~ 127 (175)
T smart00177 123 KQDLP 127 (175)
T ss_pred CcCcc
Confidence 99983
No 194
>PRK00007 elongation factor G; Reviewed
Probab=97.90 E-value=4.1e-05 Score=93.05 Aligned_cols=81 Identities=17% Similarity=0.099 Sum_probs=52.6
Q ss_pred ccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHh
Q 003415 150 SVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREI 229 (822)
Q Consensus 150 ~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~ 229 (822)
+++-+...+.++.. ...++||||||...- ..+ |.+-+..-+ .+++|++|...+..|+ ..+++.+
T Consensus 60 g~ti~~~~~~~~~~-~~~~~liDTPG~~~f------------~~e-v~~al~~~D-~~vlVvda~~g~~~qt-~~~~~~~ 123 (693)
T PRK00007 60 GITITSAATTCFWK-DHRINIIDTPGHVDF------------TIE-VERSLRVLD-GAVAVFDAVGGVEPQS-ETVWRQA 123 (693)
T ss_pred CCCEeccEEEEEEC-CeEEEEEeCCCcHHH------------HHH-HHHHHHHcC-EEEEEEECCCCcchhh-HHHHHHH
Confidence 44544455556554 358999999997421 111 333444445 6677778887776665 4445555
Q ss_pred CCCCCcEEEEeeCCCcc
Q 003415 230 DPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 230 Dp~g~RTIgViTK~D~~ 246 (822)
...+.+.|.|+||+|+.
T Consensus 124 ~~~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 124 DKYKVPRIAFVNKMDRT 140 (693)
T ss_pred HHcCCCEEEEEECCCCC
Confidence 55678899999999985
No 195
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.90 E-value=4.7e-05 Score=90.84 Aligned_cols=70 Identities=11% Similarity=0.071 Sum_probs=43.8
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcC-CCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLAS-PPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik-~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
++.++||||...-... ... +.+.+.|+. +.-.+++.|+|+++ .. ..+.+..++...+.+.|.|+||.|+
T Consensus 42 ~i~lvDtPG~~~~~~~----s~~---e~v~~~~l~~~~aDvvI~VvDat~-le--r~l~l~~ql~~~~~PiIIVlNK~Dl 111 (591)
T TIGR00437 42 DIEIVDLPGIYSLTTF----SLE---EEVARDYLLNEKPDLVVNVVDASN-LE--RNLYLTLQLLELGIPMILALNLVDE 111 (591)
T ss_pred EEEEEECCCccccCcc----chH---HHHHHHHHhhcCCCEEEEEecCCc-ch--hhHHHHHHHHhcCCCEEEEEehhHH
Confidence 5789999998653221 111 234455654 23347888888774 22 2344444454457899999999998
Q ss_pred c
Q 003415 246 R 246 (822)
Q Consensus 246 ~ 246 (822)
.
T Consensus 112 ~ 112 (591)
T TIGR00437 112 A 112 (591)
T ss_pred H
Confidence 4
No 196
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.89 E-value=5.5e-05 Score=88.03 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=44.3
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH--HHHHHHHHhCCCCCcEEEEeeC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS--LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq--~il~lar~~Dp~g~RTIgViTK 242 (822)
...++||||||.. ..+++|+.. ++..+ ++|+|++|...+..| +.+.++..+. -.+.|.|+||
T Consensus 106 ~~~i~~iDTPGh~------------~f~~~~~~~-l~~aD-~allVVDa~~G~~~qt~~~~~l~~~lg--~~~iIvvvNK 169 (474)
T PRK05124 106 KRKFIIADTPGHE------------QYTRNMATG-ASTCD-LAILLIDARKGVLDQTRRHSFIATLLG--IKHLVVAVNK 169 (474)
T ss_pred CcEEEEEECCCcH------------HHHHHHHHH-HhhCC-EEEEEEECCCCccccchHHHHHHHHhC--CCceEEEEEe
Confidence 4579999999931 245566655 45566 677788887666544 3445565553 2467889999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
+|+.
T Consensus 170 iD~~ 173 (474)
T PRK05124 170 MDLV 173 (474)
T ss_pred eccc
Confidence 9985
No 197
>PRK00049 elongation factor Tu; Reviewed
Probab=97.88 E-value=5.5e-05 Score=86.08 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=42.8
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH--HHHHHHHHhCCCCCcEE-EEee
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS--LWLDAIREIDPTFRRTV-IVVS 241 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq--~il~lar~~Dp~g~RTI-gViT 241 (822)
..+++||||||.. +.+.++... +...+ .+|+|+++...+..+ +++.+++.. +.+.| +|+|
T Consensus 74 ~~~i~~iDtPG~~------------~f~~~~~~~-~~~aD-~~llVVDa~~g~~~qt~~~~~~~~~~---g~p~iiVvvN 136 (396)
T PRK00049 74 KRHYAHVDCPGHA------------DYVKNMITG-AAQMD-GAILVVSAADGPMPQTREHILLARQV---GVPYIVVFLN 136 (396)
T ss_pred CeEEEEEECCCHH------------HHHHHHHhh-hccCC-EEEEEEECCCCCchHHHHHHHHHHHc---CCCEEEEEEe
Confidence 3578999999962 345555433 45666 666688887665554 345555554 55655 6899
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|+|+.
T Consensus 137 K~D~~ 141 (396)
T PRK00049 137 KCDMV 141 (396)
T ss_pred ecCCc
Confidence 99995
No 198
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.87 E-value=8.2e-05 Score=89.54 Aligned_cols=66 Identities=21% Similarity=0.206 Sum_probs=43.5
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH--HHHHHHHHhCCCCCcEEEEeeC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS--LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq--~il~lar~~Dp~g~RTIgViTK 242 (822)
..+++||||||.. +.+.+|+. -+...+ ++|+|+++...+..+ +.+.+++... -.+.|.|+||
T Consensus 103 ~~~~~liDtPG~~------------~f~~~~~~-~~~~aD-~~llVvda~~g~~~~t~e~~~~~~~~~--~~~iivvvNK 166 (632)
T PRK05506 103 KRKFIVADTPGHE------------QYTRNMVT-GASTAD-LAIILVDARKGVLTQTRRHSFIASLLG--IRHVVLAVNK 166 (632)
T ss_pred CceEEEEECCChH------------HHHHHHHH-HHHhCC-EEEEEEECCCCccccCHHHHHHHHHhC--CCeEEEEEEe
Confidence 3578999999952 23445554 356666 667778887666544 3455666552 1467889999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
+|+.
T Consensus 167 ~D~~ 170 (632)
T PRK05506 167 MDLV 170 (632)
T ss_pred cccc
Confidence 9985
No 199
>PRK12736 elongation factor Tu; Reviewed
Probab=97.87 E-value=5.9e-05 Score=85.77 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=42.6
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCc-EEEEee
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRR-TVIVVS 241 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~R-TIgViT 241 (822)
..+++||||||.. +.+.+++... ...+ .+|+|+++...+..++ .+.+++.. +.+ .|.|+|
T Consensus 74 ~~~i~~iDtPGh~------------~f~~~~~~~~-~~~d-~~llVvd~~~g~~~~t~~~~~~~~~~---g~~~~IvviN 136 (394)
T PRK12736 74 KRHYAHVDCPGHA------------DYVKNMITGA-AQMD-GAILVVAATDGPMPQTREHILLARQV---GVPYLVVFLN 136 (394)
T ss_pred CcEEEEEECCCHH------------HHHHHHHHHH-hhCC-EEEEEEECCCCCchhHHHHHHHHHHc---CCCEEEEEEE
Confidence 4578999999942 3445554443 4555 6666778876655543 45555544 555 578899
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|+|+.
T Consensus 137 K~D~~ 141 (394)
T PRK12736 137 KVDLV 141 (394)
T ss_pred ecCCc
Confidence 99985
No 200
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.85 E-value=0.00012 Score=76.85 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=23.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|+|||+.++|||||++.+++-.|+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~ 26 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFK 26 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 5899999999999999999988875
No 201
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.84 E-value=0.00013 Score=72.71 Aligned_cols=26 Identities=42% Similarity=0.603 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-.|+|+|+.++||||+|+.+++-.|+
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~ 30 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFS 30 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 47999999999999999999998885
No 202
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.84 E-value=0.00018 Score=70.05 Aligned_cols=85 Identities=21% Similarity=0.225 Sum_probs=51.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
.+|.|.|+||-- ....+...++++.+.+|++. +.++.-+- ..|+..++...+.....|.|.||
T Consensus 48 ~~l~i~D~~g~~-------------~~~~~~~~~~~~~~~~ii~f-d~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K 113 (162)
T PF00071_consen 48 VNLEIWDTSGQE-------------RFDSLRDIFYRNSDAIIIVF-DVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNK 113 (162)
T ss_dssp EEEEEEEETTSG-------------GGHHHHHHHHTTESEEEEEE-ETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEET
T ss_pred cccccccccccc-------------cccccccccccccccccccc-cccccccccccccccccccccccccccceeeecc
Confidence 468899999942 12345566788888666554 43322111 24677777777766788999999
Q ss_pred CCccccccccHHHHHHHhhhcC
Q 003415 243 FDNRLKEFSDRWEVDRYLSASG 264 (822)
Q Consensus 243 ~D~~~~~~s~~~~v~~~l~~~G 264 (822)
.|+.....-...+++.+....+
T Consensus 114 ~D~~~~~~v~~~~~~~~~~~~~ 135 (162)
T PF00071_consen 114 SDLSDEREVSVEEAQEFAKELG 135 (162)
T ss_dssp TTGGGGSSSCHHHHHHHHHHTT
T ss_pred ccccccccchhhHHHHHHHHhC
Confidence 9985422222223444554443
No 203
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.83 E-value=6.6e-05 Score=76.13 Aligned_cols=67 Identities=25% Similarity=0.239 Sum_probs=42.4
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEec-CCcccchH--HHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQ-SSVEWCSS--LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~-A~~D~~nq--~il~lar~~Dp~g~RTIgViTK 242 (822)
..|.|+||||--. ...+...|+...+.+||+..- ....+.+. .|+..++...+ +...|.|.||
T Consensus 48 ~~l~i~Dt~G~~~-------------~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK 113 (189)
T cd04134 48 IELSLWDTAGQEE-------------FDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-GVKLVLVALK 113 (189)
T ss_pred EEEEEEECCCChh-------------ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 4688999999521 123445577888766666532 22233322 35666665544 5789999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 114 ~Dl~ 117 (189)
T cd04134 114 CDLR 117 (189)
T ss_pred hhhc
Confidence 9984
No 204
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.81 E-value=0.00015 Score=76.29 Aligned_cols=66 Identities=23% Similarity=0.225 Sum_probs=41.9
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc--ch--HHHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW--CS--SLWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~--~n--q~il~lar~~Dp~g~RTIgViT 241 (822)
..|.|.||+|-- ....+...|+.+.+.+||+. +.++.- .+ ..|....++..| ..+.|.|.|
T Consensus 49 v~L~iwDt~G~e-------------~~~~l~~~~~~~~d~illvf-dis~~~Sf~~i~~~w~~~~~~~~~-~~piiLVgn 113 (222)
T cd04173 49 IELNMWDTSGSS-------------YYDNVRPLAYPDSDAVLICF-DISRPETLDSVLKKWQGETQEFCP-NAKVVLVGC 113 (222)
T ss_pred EEEEEEeCCCcH-------------HHHHHhHHhccCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEE
Confidence 468899999941 23455566888888555554 444221 11 124445555555 578999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 114 K~DL~ 118 (222)
T cd04173 114 KLDMR 118 (222)
T ss_pred Ccccc
Confidence 99985
No 205
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.80 E-value=0.00015 Score=85.33 Aligned_cols=74 Identities=12% Similarity=0.085 Sum_probs=46.2
Q ss_pred EEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcE
Q 003415 157 VMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRT 236 (822)
Q Consensus 157 ~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RT 236 (822)
.+.+++. -..++|+||||... ....+..++...+.+ ++|+++...+..+. .++.+.....+.+.
T Consensus 71 ~~~~~~~-~~~inliDTPG~~d-------------f~~~~~~~l~~aD~a-IlVvDa~~gv~~~t-~~l~~~~~~~~iPi 134 (526)
T PRK00741 71 VMQFPYR-DCLINLLDTPGHED-------------FSEDTYRTLTAVDSA-LMVIDAAKGVEPQT-RKLMEVCRLRDTPI 134 (526)
T ss_pred eEEEEEC-CEEEEEEECCCchh-------------hHHHHHHHHHHCCEE-EEEEecCCCCCHHH-HHHHHHHHhcCCCE
Confidence 3445543 24699999999631 123356677777755 55567766665442 23333333457899
Q ss_pred EEEeeCCCcc
Q 003415 237 VIVVSKFDNR 246 (822)
Q Consensus 237 IgViTK~D~~ 246 (822)
|.|+||+|+.
T Consensus 135 iv~iNK~D~~ 144 (526)
T PRK00741 135 FTFINKLDRD 144 (526)
T ss_pred EEEEECCccc
Confidence 9999999973
No 206
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.78 E-value=0.00014 Score=72.94 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=42.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc--cchH--HHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE--WCSS--LWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D--~~nq--~il~lar~~Dp~g~RTIgViT 241 (822)
..|.|.||||--. ...+...|+++.+.+||+. +.++. +.+- .|+..++...+ ..+.|.|.|
T Consensus 49 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~a~~~ilv~-d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvgn 113 (175)
T cd01874 49 YTLGLFDTAGQED-------------YDRLRPLSYPQTDVFLVCF-SVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGT 113 (175)
T ss_pred EEEEEEECCCccc-------------hhhhhhhhcccCCEEEEEE-ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEE
Confidence 4688999999632 2234456888888666665 33322 2221 25555655544 478999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 114 K~Dl~ 118 (175)
T cd01874 114 QIDLR 118 (175)
T ss_pred CHhhh
Confidence 99984
No 207
>PRK10218 GTP-binding protein; Provisional
Probab=97.78 E-value=0.00012 Score=87.56 Aligned_cols=64 Identities=17% Similarity=0.151 Sum_probs=44.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~RTIgViTK~ 243 (822)
..+.|+||||... ....+..|++..+.+| +|+++......+. ++..+.+ .+.+.|+|+||+
T Consensus 68 ~~inliDTPG~~d-------------f~~~v~~~l~~aDg~I-LVVDa~~G~~~qt~~~l~~a~~---~gip~IVviNKi 130 (607)
T PRK10218 68 YRINIVDTPGHAD-------------FGGEVERVMSMVDSVL-LVVDAFDGPMPQTRFVTKKAFA---YGLKPIVVINKV 130 (607)
T ss_pred EEEEEEECCCcch-------------hHHHHHHHHHhCCEEE-EEEecccCccHHHHHHHHHHHH---cCCCEEEEEECc
Confidence 5799999999632 2345678888888555 4556665554443 4444444 467889999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 131 D~~ 133 (607)
T PRK10218 131 DRP 133 (607)
T ss_pred CCC
Confidence 983
No 208
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.77 E-value=8.9e-05 Score=68.67 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=22.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|+|+|+.++||||||++|.+.+++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc
Confidence 5899999999999999999999876
No 209
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.76 E-value=0.00012 Score=83.12 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=46.4
Q ss_pred ccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHH
Q 003415 150 SVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIR 227 (822)
Q Consensus 150 ~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar 227 (822)
+++-+...+.++. ...+++||||||.. +.+.+++. -+.+.+ .+++|+++...+..++ .+.+++
T Consensus 60 G~Ti~~~~~~~~~-~~~~~~liDtpGh~------------~f~~~~~~-~~~~~D-~~ilVvda~~g~~~qt~e~l~~~~ 124 (394)
T TIGR00485 60 GITINTAHVEYET-ENRHYAHVDCPGHA------------DYVKNMIT-GAAQMD-GAILVVSATDGPMPQTREHILLAR 124 (394)
T ss_pred CcceeeEEEEEcC-CCEEEEEEECCchH------------HHHHHHHH-HHhhCC-EEEEEEECCCCCcHHHHHHHHHHH
Confidence 4444444444443 23468999999962 23344433 234556 5555777776554443 444454
Q ss_pred HhCCCCCcEE-EEeeCCCccc
Q 003415 228 EIDPTFRRTV-IVVSKFDNRL 247 (822)
Q Consensus 228 ~~Dp~g~RTI-gViTK~D~~~ 247 (822)
.. +.+.| .|+||+|+..
T Consensus 125 ~~---gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 125 QV---GVPYIVVFLNKCDMVD 142 (394)
T ss_pred Hc---CCCEEEEEEEecccCC
Confidence 43 55554 6899999853
No 210
>PRK12735 elongation factor Tu; Reviewed
Probab=97.75 E-value=0.00014 Score=82.73 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=41.7
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCcEE-EEee
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRRTV-IVVS 241 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~RTI-gViT 241 (822)
..+++||||||.. +.+.+++.. +...+ ++|+|+++...+..+. .+.+++ ..+.+.| .|+|
T Consensus 74 ~~~i~~iDtPGh~------------~f~~~~~~~-~~~aD-~~llVvda~~g~~~qt~e~l~~~~---~~gi~~iivvvN 136 (396)
T PRK12735 74 NRHYAHVDCPGHA------------DYVKNMITG-AAQMD-GAILVVSAADGPMPQTREHILLAR---QVGVPYIVVFLN 136 (396)
T ss_pred CcEEEEEECCCHH------------HHHHHHHhh-hccCC-EEEEEEECCCCCchhHHHHHHHHH---HcCCCeEEEEEE
Confidence 3578999999962 344555433 44555 6666777876665553 344444 3456655 5799
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|+|+.
T Consensus 137 K~Dl~ 141 (396)
T PRK12735 137 KCDMV 141 (396)
T ss_pred ecCCc
Confidence 99985
No 211
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=6e-05 Score=82.94 Aligned_cols=169 Identities=18% Similarity=0.237 Sum_probs=91.2
Q ss_pred CCCCCEEEEEcCCCCchhhHHHHHhCCccccc--cccccc-ccceEEEEeeCCCC-CCCccccccCCccccCCcccchhh
Q 003415 56 KLPIPEIVALGGQSDGKSSLLEALLGFRFNVR--EVEMGT-RRPLILQMVHDPTA-LDPRCRFQEEDSEEYGSPVVLASA 131 (822)
Q Consensus 56 ~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r--~~g~cT-R~P~~i~lr~~~~~-~~~~~~i~~~~~~ef~~~~~~~~~ 131 (822)
...-|-|.++|.=|.||||+|+-|++..||-- |.+..| || .+.| +++.. +.|-..+--+....| ..
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~F--i~vM-~G~~e~~ipGnal~vd~~~pF-------~g 124 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRF--IAVM-HGDEEGSIPGNALVVDAKKPF-------RG 124 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCccee--EEEE-ecCcccccCCceeeecCCCch-------hh
Confidence 45779999999999999999999999999811 112222 33 1223 23222 112111111111112 11
Q ss_pred HHHHHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEe
Q 003415 132 IADIIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQ 211 (822)
Q Consensus 132 l~~~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv 211 (822)
|.. -..+.+++ --+..+..+-+-.++||||||+-.......+. .-......+-+++.-+.|||+.-
T Consensus 125 L~~----FG~aflnR--------f~csqmp~~vLe~vtiVdtPGILsgeKQrisR--~ydF~~v~~WFaeR~D~IiLlfD 190 (532)
T KOG1954|consen 125 LNK----FGNAFLNR--------FMCSQLPNQVLESVTIVDTPGILSGEKQRISR--GYDFTGVLEWFAERVDRIILLFD 190 (532)
T ss_pred hhh----hHHHHHHH--------HHHhcCChhhhhheeeeccCcccccchhcccc--cCChHHHHHHHHHhccEEEEEec
Confidence 111 11111111 01112222334678999999998765432111 11234455677777887777776
Q ss_pred cCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCccccc
Q 003415 212 QSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLKE 249 (822)
Q Consensus 212 ~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~~~ 249 (822)
+..-|++..- -+.+..+--.-..+-+|+||.|.+.++
T Consensus 191 ~hKLDIsdEf-~~vi~aLkG~EdkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 191 AHKLDISDEF-KRVIDALKGHEDKIRVVLNKADQVDTQ 227 (532)
T ss_pred hhhccccHHH-HHHHHHhhCCcceeEEEeccccccCHH
Confidence 6666766432 223333334446778899999998654
No 212
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.74 E-value=0.00012 Score=72.12 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=23.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|+|+|+.++|||||++.+.+-.|+
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~ 26 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999999988876
No 213
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.73 E-value=9e-05 Score=73.05 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|++||.+|+|||||||+|.|....
T Consensus 104 ~v~~~G~~nvGKStliN~l~~~~~~ 128 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLRSKKVC 128 (157)
T ss_pred EEEEEeCCCCChHHHHHHHhcCCce
Confidence 6789999999999999999987654
No 214
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.69 E-value=0.00028 Score=71.45 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=42.1
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViTK 242 (822)
..|.|.|++|-- ....+...|+++.+ ++++|.+.++.-.-. .|+..+++..+.... |.|.||
T Consensus 49 ~~l~iwDt~G~~-------------~~~~~~~~~~~~a~-~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK 113 (182)
T cd04128 49 ITFSIWDLGGQR-------------EFINMLPLVCNDAV-AILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTK 113 (182)
T ss_pred EEEEEEeCCCch-------------hHHHhhHHHCcCCC-EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEc
Confidence 468899999842 23456778888887 555555554332211 356666666554444 789999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 114 ~Dl~ 117 (182)
T cd04128 114 YDLF 117 (182)
T ss_pred hhcc
Confidence 9984
No 215
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.68 E-value=0.00017 Score=71.63 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=40.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc--cch--HHHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE--WCS--SLWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D--~~n--q~il~lar~~Dp~g~RTIgViT 241 (822)
..+.|+|+||.-. ...+-..|+++.+.+|++. +.++. +.+ ..|+...+...+ +...|.|.|
T Consensus 48 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~a~~~i~v~-d~~~~~sf~~~~~~~~~~~~~~~~-~~piilv~n 112 (173)
T cd04130 48 VRLQLCDTAGQDE-------------FDKLRPLCYPDTDVFLLCF-SVVNPSSFQNISEKWIPEIRKHNP-KAPIILVGT 112 (173)
T ss_pred EEEEEEECCCChh-------------hccccccccCCCcEEEEEE-ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEee
Confidence 3578999999622 1223345788887555554 44422 222 135555554433 578999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 113 K~Dl~ 117 (173)
T cd04130 113 QADLR 117 (173)
T ss_pred Chhhc
Confidence 99984
No 216
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.67 E-value=0.00013 Score=83.75 Aligned_cols=80 Identities=20% Similarity=0.194 Sum_probs=46.5
Q ss_pred ccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc---cchHH--HHH
Q 003415 150 SVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE---WCSSL--WLD 224 (822)
Q Consensus 150 ~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D---~~nq~--il~ 224 (822)
+++-+.....+...+ ..++|+||||.- ..+..+ ..++...+ .+++|++++.. ...+. .+.
T Consensus 70 g~Tid~~~~~~~~~~-~~i~iiDtpGh~------------~f~~~~-~~~~~~aD-~~ilVvDa~~~~~~~~~~t~~~~~ 134 (426)
T TIGR00483 70 GVTIDVAHWKFETDK-YEVTIVDCPGHR------------DFIKNM-ITGASQAD-AAVLVVAVGDGEFEVQPQTREHAF 134 (426)
T ss_pred CceEEEEEEEEccCC-eEEEEEECCCHH------------HHHHHH-HhhhhhCC-EEEEEEECCCCCcccCCchHHHHH
Confidence 444444444444433 479999999931 233444 34566777 55556666654 33332 234
Q ss_pred HHHHhCCCCCcEEEEeeCCCcc
Q 003415 225 AIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 225 lar~~Dp~g~RTIgViTK~D~~ 246 (822)
+++... ..+.|+|+||.|+.
T Consensus 135 ~~~~~~--~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 135 LARTLG--INQLIVAINKMDSV 154 (426)
T ss_pred HHHHcC--CCeEEEEEEChhcc
Confidence 555543 25788899999985
No 217
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.66 E-value=0.00032 Score=70.30 Aligned_cols=66 Identities=20% Similarity=0.251 Sum_probs=41.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc--cch--HHHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE--WCS--SLWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D--~~n--q~il~lar~~Dp~g~RTIgViT 241 (822)
.+|.|.||||-- ....+...|+++.+.+||+. +.++. +.+ ..|+..++...+ ....|.|.|
T Consensus 49 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~-d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgn 113 (174)
T cd01871 49 VNLGLWDTAGQE-------------DYDRLRPLSYPQTDVFLICF-SLVSPASFENVRAKWYPEVRHHCP-NTPIILVGT 113 (174)
T ss_pred EEEEEEECCCch-------------hhhhhhhhhcCCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEee
Confidence 467899999941 22345567888888666555 43321 222 125555555544 578999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 114 K~Dl~ 118 (174)
T cd01871 114 KLDLR 118 (174)
T ss_pred Chhhc
Confidence 99984
No 218
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.65 E-value=0.00046 Score=73.18 Aligned_cols=115 Identities=19% Similarity=0.181 Sum_probs=71.8
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIK 137 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~ 137 (822)
..-.|||||+.++||||||..+++-.|+.. -.||...
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~------y~pTi~~------------------------------------- 48 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPET------YVPTVFE------------------------------------- 48 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCC------cCCceee-------------------------------------
Confidence 344799999999999999999998888621 1121100
Q ss_pred HHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc
Q 003415 138 SRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW 217 (822)
Q Consensus 138 ~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~ 217 (822)
.+. ..+.+.+ ....|.|.||||- +..+.+...|+++.+. +++|.+.++.-
T Consensus 49 ------------~~~---~~i~~~~-~~v~l~iwDTaG~-------------e~~~~~~~~~~~~ad~-vIlVyDit~~~ 98 (232)
T cd04174 49 ------------NYT---AGLETEE-QRVELSLWDTSGS-------------PYYDNVRPLCYSDSDA-VLLCFDISRPE 98 (232)
T ss_pred ------------eeE---EEEEECC-EEEEEEEEeCCCc-------------hhhHHHHHHHcCCCcE-EEEEEECCChH
Confidence 000 0111111 1246889999994 1345566779998885 45555554322
Q ss_pred --ch--HHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 218 --CS--SLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 218 --~n--q~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
.+ ..|+..+++..| ....|.|.||.|+.
T Consensus 99 Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~ 130 (232)
T cd04174 99 TVDSALKKWKAEIMDYCP-STRILLIGCKTDLR 130 (232)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEECcccc
Confidence 11 245666776665 46889999999983
No 219
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.64 E-value=9.5e-05 Score=71.71 Aligned_cols=25 Identities=40% Similarity=0.430 Sum_probs=23.1
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++|+|.+|+|||||+|+|.|..++
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~ 109 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV 109 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce
Confidence 8999999999999999999987654
No 220
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.63 E-value=0.00013 Score=74.12 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.9
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCcc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
..+++||.+|+|||||||+|.+...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999998764
No 221
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.63 E-value=0.0003 Score=71.06 Aligned_cols=112 Identities=21% Similarity=0.232 Sum_probs=69.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHHHH
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKSRT 140 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~a~ 140 (822)
.|||+|+.++|||||+..+.+-.|+.. -.||...
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~~------~~~t~~~---------------------------------------- 36 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPET------YVPTVFE---------------------------------------- 36 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCCC------cCCceEE----------------------------------------
Confidence 689999999999999999999888721 1121100
Q ss_pred HHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc--cc
Q 003415 141 EALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE--WC 218 (822)
Q Consensus 141 e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D--~~ 218 (822)
.++ ..+.+.+ ....|.|.||||-- ....+...|+++.+.+| +|.+.++. +.
T Consensus 37 ---------~~~---~~~~~~~-~~~~l~iwDt~G~~-------------~~~~~~~~~~~~a~~~i-lvfdit~~~Sf~ 89 (178)
T cd04131 37 ---------NYT---ASFEIDE-QRIELSLWDTSGSP-------------YYDNVRPLCYPDSDAVL-ICFDISRPETLD 89 (178)
T ss_pred ---------EEE---EEEEECC-EEEEEEEEECCCch-------------hhhhcchhhcCCCCEEE-EEEECCChhhHH
Confidence 000 0111211 12468899999942 12334556888887554 44444322 22
Q ss_pred h--HHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 219 S--SLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 219 n--q~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
+ ..|...+++..| ....|.|.||.|+.
T Consensus 90 ~~~~~w~~~i~~~~~-~~~iilVgnK~DL~ 118 (178)
T cd04131 90 SVLKKWRGEIQEFCP-NTKVLLVGCKTDLR 118 (178)
T ss_pred HHHHHHHHHHHHHCC-CCCEEEEEEChhhh
Confidence 2 246666677666 57899999999984
No 222
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.62 E-value=9.8e-05 Score=72.70 Aligned_cols=27 Identities=30% Similarity=0.260 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCc
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
...+.|+|+|.+++||||++|+|+|..
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~ 124 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKL 124 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccc
Confidence 466899999999999999999999965
No 223
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.62 E-value=0.00022 Score=84.12 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=45.9
Q ss_pred EEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH--HHHHHHHHhCCCCC
Q 003415 157 VMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS--LWLDAIREIDPTFR 234 (822)
Q Consensus 157 ~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq--~il~lar~~Dp~g~ 234 (822)
.+.+++. ...+.|+||||... ....+.+++...+.+| +|+++...+..+ .++++++. .+.
T Consensus 72 ~~~~~~~-~~~inliDTPG~~d-------------f~~~~~~~l~~aD~aI-lVvDa~~gv~~~t~~l~~~~~~---~~~ 133 (527)
T TIGR00503 72 VMQFPYR-DCLVNLLDTPGHED-------------FSEDTYRTLTAVDNCL-MVIDAAKGVETRTRKLMEVTRL---RDT 133 (527)
T ss_pred EEEEeeC-CeEEEEEECCChhh-------------HHHHHHHHHHhCCEEE-EEEECCCCCCHHHHHHHHHHHh---cCC
Confidence 3444443 35789999999731 1233566777777555 556666555443 34555554 467
Q ss_pred cEEEEeeCCCcc
Q 003415 235 RTVIVVSKFDNR 246 (822)
Q Consensus 235 RTIgViTK~D~~ 246 (822)
+.|.|+||.|+.
T Consensus 134 PiivviNKiD~~ 145 (527)
T TIGR00503 134 PIFTFMNKLDRD 145 (527)
T ss_pred CEEEEEECcccc
Confidence 899999999983
No 224
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.60 E-value=0.0002 Score=72.50 Aligned_cols=26 Identities=31% Similarity=0.257 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCcc
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
.-+++|||.+|+|||||||+|+|...
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~ 142 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRA 142 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccc
Confidence 45899999999999999999999754
No 225
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.59 E-value=0.00074 Score=77.42 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=45.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHH-hcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKS-LASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~-Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D 244 (822)
.+++||||||..+. +...+.+|.+- ..-+|+ -+++|++|... |++...++.+.....-+-.|+||.|
T Consensus 183 ~DvViIDTaGr~~~--------d~~lm~El~~i~~~~~p~-e~lLVlda~~G---q~a~~~a~~F~~~~~~~g~IlTKlD 250 (429)
T TIGR01425 183 FDIIIVDTSGRHKQ--------EDSLFEEMLQVAEAIQPD-NIIFVMDGSIG---QAAEAQAKAFKDSVDVGSVIITKLD 250 (429)
T ss_pred CCEEEEECCCCCcc--------hHHHHHHHHHHhhhcCCc-EEEEEeccccC---hhHHHHHHHHHhccCCcEEEEECcc
Confidence 68999999996442 22344444331 123455 56677777643 3445566666544567888999999
Q ss_pred cccccc
Q 003415 245 NRLKEF 250 (822)
Q Consensus 245 ~~~~~~ 250 (822)
-....+
T Consensus 251 ~~argG 256 (429)
T TIGR01425 251 GHAKGG 256 (429)
T ss_pred CCCCcc
Confidence 854444
No 226
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.59 E-value=0.00035 Score=79.57 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=31.9
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCcccccccccccccceE
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLI 98 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~ 98 (822)
.+|++||.+|+|||||+++|++-.+...+-.-||+-|+.
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNV 40 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeee
Confidence 489999999999999999999998764333457888865
No 227
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.59 E-value=0.00029 Score=86.12 Aligned_cols=68 Identities=18% Similarity=0.124 Sum_probs=43.1
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D 244 (822)
-..+.||||||...- ...+..++...+.+|| |+++...+..+. ..+.+.....+.+.|.|+||.|
T Consensus 85 ~~~i~liDTPG~~~f-------------~~~~~~al~~aD~~ll-Vvda~~g~~~~t-~~~~~~~~~~~~p~ivviNKiD 149 (720)
T TIGR00490 85 EYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIV-VVCAVEGVMPQT-ETVLRQALKENVKPVLFINKVD 149 (720)
T ss_pred ceEEEEEeCCCcccc-------------HHHHHHHHHhcCEEEE-EEecCCCCCccH-HHHHHHHHHcCCCEEEEEEChh
Confidence 357999999998531 1345677788875555 556665554442 2333333233567789999999
Q ss_pred ccc
Q 003415 245 NRL 247 (822)
Q Consensus 245 ~~~ 247 (822)
+..
T Consensus 150 ~~~ 152 (720)
T TIGR00490 150 RLI 152 (720)
T ss_pred ccc
Confidence 853
No 228
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.58 E-value=0.00024 Score=86.90 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=41.8
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCcEEEEeeC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~RTIgViTK 242 (822)
...++||||||...- ...+...+..-+ .+|+|+++...+..+. +++.+.+ .+.+.|.|+||
T Consensus 86 ~~~i~liDtPG~~df-------------~~~~~~~l~~~D-~avlVvda~~g~~~~t~~~~~~~~~---~~~~~iv~iNK 148 (731)
T PRK07560 86 EYLINLIDTPGHVDF-------------GGDVTRAMRAVD-GAIVVVDAVEGVMPQTETVLRQALR---ERVKPVLFINK 148 (731)
T ss_pred cEEEEEEcCCCccCh-------------HHHHHHHHHhcC-EEEEEEECCCCCCccHHHHHHHHHH---cCCCeEEEEEC
Confidence 346899999998531 123455666666 4455777776665543 3444333 35677999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
+|+.
T Consensus 149 ~D~~ 152 (731)
T PRK07560 149 VDRL 152 (731)
T ss_pred chhh
Confidence 9985
No 229
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.58 E-value=0.00038 Score=79.54 Aligned_cols=65 Identities=22% Similarity=0.206 Sum_probs=40.4
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc-ch--HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW-CS--SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~-~n--q~il~lar~~Dp~g~RTIgViTK 242 (822)
..++|+|+||.. +.+.++ ..++...+ .+++|++|+... .. .+.+.+++... ..+.|.|+||
T Consensus 80 ~~i~liDtPGh~------------~f~~~~-~~g~~~aD-~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK 143 (406)
T TIGR03680 80 RRVSFVDAPGHE------------TLMATM-LSGAALMD-GALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNK 143 (406)
T ss_pred cEEEEEECCCHH------------HHHHHH-HHHHHHCC-EEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEc
Confidence 468999999941 233444 44455666 566677777543 22 23444444432 3568999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 144 ~Dl~ 147 (406)
T TIGR03680 144 IDLV 147 (406)
T ss_pred cccC
Confidence 9985
No 230
>PRK13351 elongation factor G; Reviewed
Probab=97.57 E-value=0.00029 Score=85.68 Aligned_cols=67 Identities=18% Similarity=0.154 Sum_probs=45.1
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D 244 (822)
...++||||||... ...++..|++..+.+ ++|++++.....+. ..+.+.++..+.+.|.|+||.|
T Consensus 72 ~~~i~liDtPG~~d-------------f~~~~~~~l~~aD~~-ilVvd~~~~~~~~~-~~~~~~~~~~~~p~iiviNK~D 136 (687)
T PRK13351 72 NHRINLIDTPGHID-------------FTGEVERSLRVLDGA-VVVFDAVTGVQPQT-ETVWRQADRYGIPRLIFINKMD 136 (687)
T ss_pred CEEEEEEECCCcHH-------------HHHHHHHHHHhCCEE-EEEEeCCCCCCHHH-HHHHHHHHhcCCCEEEEEECCC
Confidence 45899999999742 234567788888754 45667765554332 2333444445788999999999
Q ss_pred cc
Q 003415 245 NR 246 (822)
Q Consensus 245 ~~ 246 (822)
+.
T Consensus 137 ~~ 138 (687)
T PRK13351 137 RV 138 (687)
T ss_pred CC
Confidence 84
No 231
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.54 E-value=0.00025 Score=78.53 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=29.6
Q ss_pred EEEEcCCCCchhhHHHHHhCCcccccccccccccceE
Q 003415 62 IVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLI 98 (822)
Q Consensus 62 IVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~ 98 (822)
|++||..|+|||||+++|++.++.+..-..||+-|+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~ 37 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNV 37 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCcccccee
Confidence 5899999999999999999988753332347888865
No 232
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.53 E-value=0.00074 Score=68.65 Aligned_cols=66 Identities=23% Similarity=0.197 Sum_probs=44.1
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc--cch--HHHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE--WCS--SLWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D--~~n--q~il~lar~~Dp~g~RTIgViT 241 (822)
..|.|.||+|-- ....+...|+++.+.+|| |.+.++. +.+ ..|.+.+++..| ....|.|.|
T Consensus 53 ~~l~iwDtaG~e-------------~~~~~~~~~~~~ad~~il-vyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgN 117 (182)
T cd04172 53 IELSLWDTSGSP-------------YYDNVRPLSYPDSDAVLI-CFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGC 117 (182)
T ss_pred EEEEEEECCCch-------------hhHhhhhhhcCCCCEEEE-EEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeE
Confidence 468899999841 234566778888886555 4444432 222 246666777666 478899999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 118 K~DL~ 122 (182)
T cd04172 118 KSDLR 122 (182)
T ss_pred Chhhh
Confidence 99984
No 233
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.52 E-value=0.0006 Score=70.52 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=44.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViTK 242 (822)
..|.|.||||-- ....|...|+++.+.+|| |.+.++...-. .|++.+++..+ +...|.|.||
T Consensus 44 ~~l~iwDt~G~e-------------~~~~l~~~~~~~ad~~il-V~D~t~~~S~~~i~~w~~~i~~~~~-~~piilvgNK 108 (200)
T smart00176 44 IRFNVWDTAGQE-------------KFGGLRDGYYIQGQCAII-MFDVTARVTYKNVPNWHRDLVRVCE-NIPIVLCGNK 108 (200)
T ss_pred EEEEEEECCCch-------------hhhhhhHHHhcCCCEEEE-EEECCChHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 468899999952 345677789998885554 45555433222 35555555544 6789999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 109 ~Dl~ 112 (200)
T smart00176 109 VDVK 112 (200)
T ss_pred cccc
Confidence 9984
No 234
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.49 E-value=0.00046 Score=69.83 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=43.8
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc--ccch--HHHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV--EWCS--SLWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~--D~~n--q~il~lar~~Dp~g~RTIgViT 241 (822)
.+|.|.||+|-- ..+.|...|+++.+.+||+. +.++ -+.+ ..|++.+++..+ ....|.|-|
T Consensus 49 v~l~i~Dt~G~~-------------~~~~~~~~~~~~a~~~ilvy-d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgn 113 (176)
T cd04133 49 VNLGLWDTAGQE-------------DYNRLRPLSYRGADVFVLAF-SLISRASYENVLKKWVPELRHYAP-NVPIVLVGT 113 (176)
T ss_pred EEEEEEECCCCc-------------cccccchhhcCCCcEEEEEE-EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEe
Confidence 578999999952 23345567898888666655 3332 2222 236666666654 578899999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 114 K~Dl~ 118 (176)
T cd04133 114 KLDLR 118 (176)
T ss_pred Chhhc
Confidence 99994
No 235
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.48 E-value=0.00059 Score=68.98 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|+|+|+.++|||||++.|++-.|+
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~ 27 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFP 27 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999999866665
No 236
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.46 E-value=0.00028 Score=81.64 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=40.9
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc---------chHHHHHHHHHhCCCCC-
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW---------CSSLWLDAIREIDPTFR- 234 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~---------~nq~il~lar~~Dp~g~- 234 (822)
-..++|||+||.. +.+.+|+.. +...+ ++++|++|...+ .+.+.+.+++.+ |.
T Consensus 84 ~~~i~lIDtPGh~------------~f~~~~~~g-~~~aD-~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~ 146 (446)
T PTZ00141 84 KYYFTIIDAPGHR------------DFIKNMITG-TSQAD-VAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVK 146 (446)
T ss_pred CeEEEEEECCChH------------HHHHHHHHh-hhhcC-EEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCC
Confidence 3578999999942 345565544 55666 445577777654 223345566554 54
Q ss_pred cEEEEeeCCCc
Q 003415 235 RTVIVVSKFDN 245 (822)
Q Consensus 235 RTIgViTK~D~ 245 (822)
+.|.|+||+|.
T Consensus 147 ~iiv~vNKmD~ 157 (446)
T PTZ00141 147 QMIVCINKMDD 157 (446)
T ss_pred eEEEEEEcccc
Confidence 46789999995
No 237
>PTZ00416 elongation factor 2; Provisional
Probab=97.46 E-value=0.00033 Score=86.89 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=44.5
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
.++||||||... .+.+ +..-+...+ .+++|++|...+..++ ..+.+.+...+.+.|.|+||+|+.
T Consensus 93 ~i~liDtPG~~~------------f~~~-~~~al~~~D-~ailVvda~~g~~~~t-~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 93 LINLIDSPGHVD------------FSSE-VTAALRVTD-GALVVVDCVEGVCVQT-ETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EEEEEcCCCHHh------------HHHH-HHHHHhcCC-eEEEEEECCCCcCccH-HHHHHHHHHcCCCEEEEEEChhhh
Confidence 489999999843 2222 344456666 5566777887777664 345555555578899999999995
No 238
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.44 E-value=0.0015 Score=67.86 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=23.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|+|||+.++|||||+..+++-.|+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~ 26 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVL 26 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 6899999999999999999998886
No 239
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.42 E-value=0.00095 Score=67.94 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=68.8
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHHHH
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKSRT 140 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~a~ 140 (822)
.|+|||+.++|||||+..+..-.|+.. - .||.-.
T Consensus 5 ki~~vG~~~vGKTsli~~~~~~~f~~~--~----~~t~~~---------------------------------------- 38 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYTTNAFPKE--Y----IPTVFD---------------------------------------- 38 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcC--C----CCceEe----------------------------------------
Confidence 799999999999999999998888621 0 121100
Q ss_pred HHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc--cc
Q 003415 141 EALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE--WC 218 (822)
Q Consensus 141 e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D--~~ 218 (822)
.+. ..+.+.+ ....|.|.||||- +..+.|...|+.+.+.+|++. +.++. +.
T Consensus 39 ---------~~~---~~~~~~~-~~~~l~i~Dt~G~-------------e~~~~l~~~~~~~a~~~ilvy-dit~~~Sf~ 91 (191)
T cd01875 39 ---------NYS---AQTAVDG-RTVSLNLWDTAGQ-------------EEYDRLRTLSYPQTNVFIICF-SIASPSSYE 91 (191)
T ss_pred ---------eeE---EEEEECC-EEEEEEEEECCCc-------------hhhhhhhhhhccCCCEEEEEE-ECCCHHHHH
Confidence 000 0111221 1256889999994 234557778999888666654 43321 21
Q ss_pred h--HHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 219 S--SLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 219 n--q~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
+ ..|...++...+ ....|.|.||.|+.
T Consensus 92 ~~~~~w~~~i~~~~~-~~piilvgNK~DL~ 120 (191)
T cd01875 92 NVRHKWHPEVCHHCP-NVPILLVGTKKDLR 120 (191)
T ss_pred HHHHHHHHHHHhhCC-CCCEEEEEeChhhh
Confidence 1 124444444444 57889999999983
No 240
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.41 E-value=0.00078 Score=70.87 Aligned_cols=63 Identities=21% Similarity=0.335 Sum_probs=38.8
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCcEEEEeeC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~RTIgViTK 242 (822)
...+++||+||.. ..++ ..++..+ ++|+|+++...+..++ ++.+++.. .....|+|+||
T Consensus 82 ~~~i~~vDtPg~~---------------~~~l-~~ak~aD-vVllviDa~~~~~~~~~~i~~~l~~~--g~p~vi~VvnK 142 (225)
T cd01882 82 KRRLTFIECPNDI---------------NAMI-DIAKVAD-LVLLLIDASFGFEMETFEFLNILQVH--GFPRVMGVLTH 142 (225)
T ss_pred CceEEEEeCCchH---------------HHHH-HHHHhcC-EEEEEEecCcCCCHHHHHHHHHHHHc--CCCeEEEEEec
Confidence 4568999999843 1111 1123344 7888888887665544 44444432 12346779999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
+|++
T Consensus 143 ~D~~ 146 (225)
T cd01882 143 LDLF 146 (225)
T ss_pred cccC
Confidence 9986
No 241
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.40 E-value=0.0011 Score=82.41 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=43.6
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
..++||||||... .+.++ ..-+...+ ..++|++|...+..+. ..+.+.+...+...|.++||+|+
T Consensus 98 ~~inliDtPGh~d------------F~~e~-~~al~~~D-~ailVvda~~Gv~~~t-~~~~~~~~~~~~p~i~~iNK~D~ 162 (843)
T PLN00116 98 YLINLIDSPGHVD------------FSSEV-TAALRITD-GALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMDR 162 (843)
T ss_pred eEEEEECCCCHHH------------HHHHH-HHHHhhcC-EEEEEEECCCCCcccH-HHHHHHHHHCCCCEEEEEECCcc
Confidence 3468999999732 33333 33345555 4566667777776664 34445555567889999999999
Q ss_pred c
Q 003415 246 R 246 (822)
Q Consensus 246 ~ 246 (822)
.
T Consensus 163 ~ 163 (843)
T PLN00116 163 C 163 (843)
T ss_pred c
Confidence 6
No 242
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.39 E-value=0.00035 Score=76.09 Aligned_cols=80 Identities=23% Similarity=0.227 Sum_probs=42.6
Q ss_pred CCeEEEeCCCCccccCCCC-CCCchHHHHHHHHHhcCCCC------------cEEEEEec-CCcccchHHHHHHHHHhCC
Q 003415 166 PNLTIIDTPGFVLKAKKGE-PENTPDEILSMVKSLASPPH------------RILVFLQQ-SSVEWCSSLWLDAIREIDP 231 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q-~~~~~~~v~~LV~~Yik~~~------------sIILaVv~-A~~D~~nq~il~lar~~Dp 231 (822)
.+|+||||||+...-.... -......|++--..|+.++. .++|..++ ....+...+ ++..+++..
T Consensus 63 l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~D-i~~mk~Ls~ 141 (281)
T PF00735_consen 63 LNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLD-IEFMKRLSK 141 (281)
T ss_dssp EEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHH-HHHHHHHTT
T ss_pred eEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHH-HHHHHHhcc
Confidence 4799999999975432110 01122333333455553211 12344444 444566555 456666754
Q ss_pred CCCcEEEEeeCCCccc
Q 003415 232 TFRRTVIVVSKFDNRL 247 (822)
Q Consensus 232 ~g~RTIgViTK~D~~~ 247 (822)
.-..|=||.|.|.+.
T Consensus 142 -~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 142 -RVNVIPVIAKADTLT 156 (281)
T ss_dssp -TSEEEEEESTGGGS-
T ss_pred -cccEEeEEecccccC
Confidence 577899999999964
No 243
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.39 E-value=0.00058 Score=74.40 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
.++.|-.||=+|+||||||+||+.-+
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AK 220 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAK 220 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccC
Confidence 35667899999999999999999764
No 244
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.37 E-value=0.00049 Score=79.66 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=40.5
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc-cc------hH--HHHHHHHHhCCCCC-
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE-WC------SS--LWLDAIREIDPTFR- 234 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D-~~------nq--~il~lar~~Dp~g~- 234 (822)
-..++|||+||- .+.+.+| ..++...+..|| |++|..+ +. .| +.+.+++.. |.
T Consensus 84 ~~~i~liDtPGh------------~df~~~~-~~g~~~aD~aIl-VVda~~G~~e~g~~~~~qT~eh~~~~~~~---gi~ 146 (447)
T PLN00043 84 KYYCTVIDAPGH------------RDFIKNM-ITGTSQADCAVL-IIDSTTGGFEAGISKDGQTREHALLAFTL---GVK 146 (447)
T ss_pred CEEEEEEECCCH------------HHHHHHH-HhhhhhccEEEE-EEEcccCceecccCCCchHHHHHHHHHHc---CCC
Confidence 347999999994 2344554 455677775555 6666644 21 23 234445443 45
Q ss_pred cEEEEeeCCCcc
Q 003415 235 RTVIVVSKFDNR 246 (822)
Q Consensus 235 RTIgViTK~D~~ 246 (822)
+.|.|+||+|+.
T Consensus 147 ~iIV~vNKmD~~ 158 (447)
T PLN00043 147 QMICCCNKMDAT 158 (447)
T ss_pred cEEEEEEcccCC
Confidence 568899999974
No 245
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.34 E-value=0.00032 Score=75.99 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..+++|||.+|+||||+||+|+|....
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~ 144 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVA 144 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 457999999999999999999987654
No 246
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.33 E-value=0.0029 Score=71.80 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=47.4
Q ss_pred CCeEEEeCCCCccccCCCCCCCch------------------HHHHHHHHHhcCCCCcEEEEEe-cCC------cccchH
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTP------------------DEILSMVKSLASPPHRILVFLQ-QSS------VEWCSS 220 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~------------------~~v~~LV~~Yik~~~sIILaVv-~A~------~D~~nq 220 (822)
-...|||++|+.-....|.-+... ..+- .++-|...-+|-|+|. +++ .++...
T Consensus 91 ~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiG--T~kVI~dhstIgivVtTDgsi~dI~Re~y~~a 168 (492)
T TIGR02836 91 FKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIG--TRKVIQEHSTIGVVVTTDGTITDIPREDYVEA 168 (492)
T ss_pred ccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhh--HHHHHHhcCcEEEEEEcCCCccccccccchHH
Confidence 568999999998765544322221 1111 2445564556877777 664 344443
Q ss_pred HHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 221 LWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 221 ~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
+ .+.+.++...+.+.|+|+||.|-
T Consensus 169 E-e~~i~eLk~~~kPfiivlN~~dp 192 (492)
T TIGR02836 169 E-ERVIEELKELNKPFIILLNSTHP 192 (492)
T ss_pred H-HHHHHHHHhcCCCEEEEEECcCC
Confidence 3 34444554558999999999994
No 247
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.32 E-value=0.0009 Score=67.03 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..+.++++|.+++||||++++|.+..+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~ 141 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA 141 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce
Confidence 3468999999999999999999998764
No 248
>PLN00023 GTP-binding protein; Provisional
Probab=97.32 E-value=0.0056 Score=67.98 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=26.3
Q ss_pred CCCCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 56 KLPIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 56 ~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
....-.|||||+.++||||||..|++-.|.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~ 47 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSI 47 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcc
Confidence 455568999999999999999999988775
No 249
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.31 E-value=0.00075 Score=72.18 Aligned_cols=165 Identities=18% Similarity=0.260 Sum_probs=88.7
Q ss_pred CCCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCC--CccccccC-C----cccc--CC--
Q 003415 56 KLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALD--PRCRFQEE-D----SEEY--GS-- 124 (822)
Q Consensus 56 ~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~--~~~~i~~~-~----~~ef--~~-- 124 (822)
.=..+-|+|||--+|||+|++..|.++-.- +. |+ |-.|.|-+.-.... ..+-|..- + -+.| |+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~-~~----~p-pYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHA-KK----TP-PYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhh-cc----CC-CeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 335668999999999999999999987543 21 22 55555532211000 00111000 0 0111 11
Q ss_pred -c-------ccchhhHHHHHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHH
Q 003415 125 -P-------VVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMV 196 (822)
Q Consensus 125 -~-------~~~~~~l~~~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV 196 (822)
- .+.++++-..|+++.+ ..+..||||||-|..=+=..+-.+ +.
T Consensus 90 gI~TsLNLF~tk~dqv~~~iek~~~-----------------------~~~~~liDTPGQIE~FtWSAsGsI------It 140 (366)
T KOG1532|consen 90 GIVTSLNLFATKFDQVIELIEKRAE-----------------------EFDYVLIDTPGQIEAFTWSASGSI------IT 140 (366)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhc-----------------------ccCEEEEcCCCceEEEEecCCccc------hH
Confidence 1 1223444444544332 256899999998764321111111 12
Q ss_pred HHhcCCCCcEEEEEecCCcccchH----HHHHHHHHhCCCCCcEEEEeeCCCccccccccHHH
Q 003415 197 KSLASPPHRILVFLQQSSVEWCSS----LWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRWE 255 (822)
Q Consensus 197 ~~Yik~~~sIILaVv~A~~D~~nq----~il~lar~~Dp~g~RTIgViTK~D~~~~~~s~~~~ 255 (822)
+.....-.+||..|++....-+.. .++=.|.-+=...-.+|.|+||.|....++...|-
T Consensus 141 e~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm 203 (366)
T KOG1532|consen 141 ETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWM 203 (366)
T ss_pred hhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccHHHHHHH
Confidence 333344467888888654322221 12222222223468899999999998888888884
No 250
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.27 E-value=0.00079 Score=70.88 Aligned_cols=29 Identities=45% Similarity=0.724 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC--cccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF--RFNV 86 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~--~fp~ 86 (822)
++--|.|+|.+++|||+|||.|+|. .|..
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~ 36 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDV 36 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEe
Confidence 3447899999999999999999999 7873
No 251
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.27 E-value=0.0019 Score=71.19 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=46.9
Q ss_pred CCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc-c---cch--HHHHHHHHHhCCC--CCc
Q 003415 164 HCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV-E---WCS--SLWLDAIREIDPT--FRR 235 (822)
Q Consensus 164 ~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~-D---~~n--q~il~lar~~Dp~--g~R 235 (822)
+...+++-|.||||..+..|.---. +.++ .|+.- .++|-|+|.+. | ... +.+....++++|. .+.
T Consensus 205 ~~~sfv~ADIPGLIEGAs~G~GLG~-~FLr-----HIERt-~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~ 277 (369)
T COG0536 205 GGESFVVADIPGLIEGASEGVGLGL-RFLR-----HIERT-RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKP 277 (369)
T ss_pred CCCcEEEecCcccccccccCCCccH-HHHH-----HHHhh-heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCc
Confidence 3456899999999998875532111 1111 22223 37777877552 2 121 2344555666653 578
Q ss_pred EEEEeeCCCcccc
Q 003415 236 TVIVVSKFDNRLK 248 (822)
Q Consensus 236 TIgViTK~D~~~~ 248 (822)
-|.|+||+|....
T Consensus 278 ~ivv~NKiD~~~~ 290 (369)
T COG0536 278 RIVVLNKIDLPLD 290 (369)
T ss_pred eEEEEeccCCCcC
Confidence 8999999997544
No 252
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.24 E-value=0.0019 Score=74.06 Aligned_cols=22 Identities=36% Similarity=0.598 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.|+|+|+-.+|||||+++|+|.
T Consensus 11 ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 11 NIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred EEEEEccCCCCHHHHHHHhhCe
Confidence 6899999999999999999875
No 253
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.19 E-value=0.0033 Score=63.24 Aligned_cols=93 Identities=23% Similarity=0.165 Sum_probs=52.6
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHH----HHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLD----AIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~----lar~~Dp~g~RTIgViT 241 (822)
..+++.|++|=.. ++.+-+.|.++.+ .|++|+|+++.-.-.++.. +...-.-...+.+.++|
T Consensus 58 ~~~~~~d~gG~~~-------------~~~~w~~y~~~~~-~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~N 123 (175)
T PF00025_consen 58 YSLTIWDLGGQES-------------FRPLWKSYFQNAD-GIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILAN 123 (175)
T ss_dssp EEEEEEEESSSGG-------------GGGGGGGGHTTES-EEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEE
T ss_pred EEEEEEecccccc-------------ccccceeeccccc-eeEEEEecccceeecccccchhhhcchhhcccceEEEEec
Confidence 4689999999422 2345567888877 5566666663322233332 22222234688999999
Q ss_pred CCCccccccccHHHHHHHhhhcCCcCCCCCCcEEe
Q 003415 242 KFDNRLKEFSDRWEVDRYLSASGYLGENTRPFFVA 276 (822)
Q Consensus 242 K~D~~~~~~s~~~~v~~~l~~~G~l~~~~~gw~v~ 276 (822)
|.|.. +.....++..++.... +. ...+|++.
T Consensus 124 K~D~~--~~~~~~~i~~~l~l~~-l~-~~~~~~v~ 154 (175)
T PF00025_consen 124 KQDLP--DAMSEEEIKEYLGLEK-LK-NKRPWSVF 154 (175)
T ss_dssp STTST--TSSTHHHHHHHTTGGG-TT-SSSCEEEE
T ss_pred ccccc--CcchhhHHHhhhhhhh-cc-cCCceEEE
Confidence 99973 3333444554443222 21 34578776
No 254
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.19 E-value=0.00085 Score=73.40 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
|+++||-+|+||||||++|++..-
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~s 88 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKS 88 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCc
Confidence 899999999999999999999763
No 255
>PRK12740 elongation factor G; Reviewed
Probab=97.18 E-value=0.0011 Score=80.37 Aligned_cols=67 Identities=19% Similarity=0.121 Sum_probs=44.1
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D 244 (822)
...++||||||... ....+..++...+ ++|+|++++.+...+. ..+.+.+...+.+.|.|+||+|
T Consensus 59 ~~~i~liDtPG~~~-------------~~~~~~~~l~~aD-~vllvvd~~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~D 123 (668)
T PRK12740 59 GHKINLIDTPGHVD-------------FTGEVERALRVLD-GAVVVVCAVGGVEPQT-ETVWRQAEKYGVPRIIFVNKMD 123 (668)
T ss_pred CEEEEEEECCCcHH-------------HHHHHHHHHHHhC-eEEEEEeCCCCcCHHH-HHHHHHHHHcCCCEEEEEECCC
Confidence 35799999999742 2234566677777 5666667766554443 2333344345789999999999
Q ss_pred cc
Q 003415 245 NR 246 (822)
Q Consensus 245 ~~ 246 (822)
+.
T Consensus 124 ~~ 125 (668)
T PRK12740 124 RA 125 (668)
T ss_pred CC
Confidence 85
No 256
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.16 E-value=0.00059 Score=74.39 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
...++|||.+|+||||+||+|+|....
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~ 147 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIA 147 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcc
Confidence 358999999999999999999997643
No 257
>PRK13768 GTPase; Provisional
Probab=97.07 E-value=0.00056 Score=73.30 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=44.8
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc-----chHHHHHHHHHhCCCCCcEEEEe
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW-----CSSLWLDAIREIDPTFRRTVIVV 240 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~-----~nq~il~lar~~Dp~g~RTIgVi 240 (822)
.++.|||+||...... .....+.+++.+......+|++|+|+.... ..+.++.+..+.. .+.+.|.|+
T Consensus 97 ~~~~~~d~~g~~~~~~------~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~ 169 (253)
T PRK13768 97 ADYVLVDTPGQMELFA------FRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVL 169 (253)
T ss_pred CCEEEEeCCcHHHHHh------hhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEE
Confidence 5899999999865421 112334444443332266888898885322 2222333333332 368999999
Q ss_pred eCCCccc
Q 003415 241 SKFDNRL 247 (822)
Q Consensus 241 TK~D~~~ 247 (822)
||.|+..
T Consensus 170 nK~D~~~ 176 (253)
T PRK13768 170 NKADLLS 176 (253)
T ss_pred EhHhhcC
Confidence 9999953
No 258
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.06 E-value=0.0045 Score=69.06 Aligned_cols=24 Identities=33% Similarity=0.235 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCC
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
...|.|+|.++|||||++++|...
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 447999999999999999998764
No 259
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.06 E-value=0.0036 Score=67.98 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=43.1
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHH---HHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILS---MVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~---LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK 242 (822)
.+++||||||..+.. ....+.++. ++...+.....-+++|++++. .++.+..+..+...-.-+-.|+||
T Consensus 155 ~D~ViIDT~G~~~~d-----~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~---~~~~~~~~~~f~~~~~~~g~IlTK 226 (272)
T TIGR00064 155 IDVVLIDTAGRLQNK-----VNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT---GQNALEQAKVFNEAVGLTGIILTK 226 (272)
T ss_pred CCEEEEeCCCCCcch-----HHHHHHHHHHHHHHhcccCCCCceEEEEEECCC---CHHHHHHHHHHHhhCCCCEEEEEc
Confidence 689999999986531 122223333 333334333445566777763 233344445443323456779999
Q ss_pred CCcccccc
Q 003415 243 FDNRLKEF 250 (822)
Q Consensus 243 ~D~~~~~~ 250 (822)
.|-....+
T Consensus 227 lDe~~~~G 234 (272)
T TIGR00064 227 LDGTAKGG 234 (272)
T ss_pred cCCCCCcc
Confidence 99854443
No 260
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.05 E-value=0.00079 Score=75.83 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
..++|||.+|+|||||||+|++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 489999999999999999999864
No 261
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.03 E-value=0.0086 Score=60.90 Aligned_cols=134 Identities=18% Similarity=0.207 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCcccccccccc------cccceEEEEeeCCCCCCCccccccCCccccCCcccchh
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMG------TRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLAS 130 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~c------TR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~ 130 (822)
+.-+.|||.|.+++||++++++|+-.+.+..+ ... +.+||.+-
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~-~~~~~~s~k~kr~tTva------------------------------ 56 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITE-ADASSVSGKGKRPTTVA------------------------------ 56 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceee-ccccccccccccceeEe------------------------------
Confidence 45679999999999999999999998765332 111 11111111
Q ss_pred hHHHHHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEE
Q 003415 131 AIADIIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFL 210 (822)
Q Consensus 131 ~l~~~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaV 210 (822)
.|.-. ++.-+-.-+.|+||||= +..+-|..-|.+...-.|++|
T Consensus 57 ----------------------~D~g~--~~~~~~~~v~LfgtPGq-------------~RF~fm~~~l~~ga~gaivlV 99 (187)
T COG2229 57 ----------------------MDFGS--IELDEDTGVHLFGTPGQ-------------ERFKFMWEILSRGAVGAIVLV 99 (187)
T ss_pred ----------------------ecccc--eEEcCcceEEEecCCCc-------------HHHHHHHHHHhCCcceEEEEE
Confidence 11111 11112356889999994 244556666777766566665
Q ss_pred ecC-CcccchHHHHHHHHHhCCCCCcEEEEeeCCCccccccccHHHHHHHhhh
Q 003415 211 QQS-SVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRWEVDRYLSA 262 (822)
Q Consensus 211 v~A-~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~~~~s~~~~v~~~l~~ 262 (822)
-++ ..+...-.++.+.....| -+.+..+||.|+-.-.. ...+..++..
T Consensus 100 Dss~~~~~~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a~p--pe~i~e~l~~ 148 (187)
T COG2229 100 DSSRPITFHAEEIIDFLTSRNP--IPVVVAINKQDLFDALP--PEKIREALKL 148 (187)
T ss_pred ecCCCcchHHHHHHHHHhhccC--CCEEEEeeccccCCCCC--HHHHHHHHHh
Confidence 432 233322334444443333 78999999999832221 2235555543
No 262
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.02 E-value=0.0063 Score=67.56 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=44.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHH---HHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSM---VKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~L---V~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK 242 (822)
.+++||||||..+... ...+.++.+ +...+.....-+++|++|+.. +..+.-++.+.....-+-.|+||
T Consensus 197 ~D~ViIDTaGr~~~~~-----~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g---~~~~~~a~~f~~~~~~~giIlTK 268 (318)
T PRK10416 197 IDVLIIDTAGRLHNKT-----NLMEELKKIKRVIKKADPDAPHEVLLVLDATTG---QNALSQAKAFHEAVGLTGIILTK 268 (318)
T ss_pred CCEEEEeCCCCCcCCH-----HHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC---hHHHHHHHHHHhhCCCCEEEEEC
Confidence 6899999999865421 223334333 223333334456777887742 33344456654434566789999
Q ss_pred CCccccc
Q 003415 243 FDNRLKE 249 (822)
Q Consensus 243 ~D~~~~~ 249 (822)
.|.....
T Consensus 269 lD~t~~~ 275 (318)
T PRK10416 269 LDGTAKG 275 (318)
T ss_pred CCCCCCc
Confidence 9975443
No 263
>PRK14974 cell division protein FtsY; Provisional
Probab=96.98 E-value=0.004 Score=69.59 Aligned_cols=74 Identities=20% Similarity=0.344 Sum_probs=46.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
.+++||||||..+.. ......++.+++ .-+|+ .+++|++|.. .++++..++.+...-.-+-.|+||.|.
T Consensus 223 ~DvVLIDTaGr~~~~-----~~lm~eL~~i~~--~~~pd-~~iLVl~a~~---g~d~~~~a~~f~~~~~~~giIlTKlD~ 291 (336)
T PRK14974 223 IDVVLIDTAGRMHTD-----ANLMDELKKIVR--VTKPD-LVIFVGDALA---GNDAVEQAREFNEAVGIDGVILTKVDA 291 (336)
T ss_pred CCEEEEECCCccCCc-----HHHHHHHHHHHH--hhCCc-eEEEeecccc---chhHHHHHHHHHhcCCCCEEEEeeecC
Confidence 579999999987532 123334444432 23466 4456777753 346667777765544557889999999
Q ss_pred ccccc
Q 003415 246 RLKEF 250 (822)
Q Consensus 246 ~~~~~ 250 (822)
....+
T Consensus 292 ~~~~G 296 (336)
T PRK14974 292 DAKGG 296 (336)
T ss_pred CCCcc
Confidence 64444
No 264
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.96 E-value=0.0061 Score=70.38 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=45.3
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
+++||||||..+.. +...+.+..+. ..+ .++ -+|+|++|+.. +++.+.++.+...-.-+-.|+||.|-.
T Consensus 177 DvVIIDTAGr~~~d-----~~lm~El~~l~-~~~-~pd-evlLVvda~~g---q~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 177 DVIIVDTAGRHALE-----EDLIEEMKEIK-EAV-KPD-EVLLVIDATIG---QQAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CEEEEECCCcccch-----HHHHHHHHHHH-HHh-ccc-ceeEEEecccc---HHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 89999999986431 12222333332 222 444 45566677653 567788888876555667799999985
Q ss_pred cccc
Q 003415 247 LKEF 250 (822)
Q Consensus 247 ~~~~ 250 (822)
...+
T Consensus 246 a~~G 249 (437)
T PRK00771 246 AKGG 249 (437)
T ss_pred Cccc
Confidence 4443
No 265
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.95 E-value=0.0012 Score=73.27 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHhCCcc
Q 003415 41 EAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 41 d~id~Lr~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
+.+++++..|. ...-=.+.|||-+|+|||||||+|.|...
T Consensus 118 ~~i~~~~~~~~----~~~~~~v~vvG~PNVGKSslIN~L~~k~~ 157 (322)
T COG1161 118 EKIKRLKKKGL----LKRKIRVGVVGYPNVGKSTLINRLLGKKV 157 (322)
T ss_pred HHHHHHhhcCC----CccceEEEEEcCCCCcHHHHHHHHhcccc
Confidence 66666666542 11112489999999999999999999875
No 266
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.94 E-value=0.008 Score=62.12 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=22.3
Q ss_pred CCCCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 56 KLPIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 56 ~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
....-.|+++|+.++||||+++.++.-.|+
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~ 35 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFE 35 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCC
Confidence 344558999999999999999754433354
No 267
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=96.91 E-value=0.0051 Score=71.52 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=41.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc-cchH--HHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE-WCSS--LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D-~~nq--~il~lar~~Dp~g~RTIgViTK 242 (822)
..++|||+||. ...+++|+.. +...+ .+|+|++|+.. ...| +.+.++..+. ..+.|.|+||
T Consensus 117 ~~i~~IDtPGH------------~~fi~~m~~g-~~~~D-~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNK 180 (460)
T PTZ00327 117 RHVSFVDCPGH------------DILMATMLNG-AAVMD-AALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNK 180 (460)
T ss_pred ceEeeeeCCCH------------HHHHHHHHHH-HhhCC-EEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEec
Confidence 36899999994 2356666654 34555 55667777754 3333 3344444432 2467899999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 181 iDlv 184 (460)
T PTZ00327 181 IDLV 184 (460)
T ss_pred cccc
Confidence 9985
No 268
>PRK13796 GTPase YqeH; Provisional
Probab=96.91 E-value=0.0012 Score=74.52 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
.++|||.+|+|||||||+|.+..
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhc
Confidence 68999999999999999999753
No 269
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=96.90 E-value=0.0014 Score=75.13 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=54.3
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCC----cccchHHHHHHHHHhCC--CCCcEEE
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSS----VEWCSSLWLDAIREIDP--TFRRTVI 238 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~----~D~~nq~il~lar~~Dp--~g~RTIg 238 (822)
+.-+-+||||||-..+ .++...|+-..-..|.+-++-+|.+++-+ -.++.| .++...+-| ..+.+|.
T Consensus 214 YlrwQViDTPGILD~p-----lEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~Q--vkLfhsIKpLFaNK~~Il 286 (620)
T KOG1490|consen 214 YLRWQVIDTPGILDRP-----EEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQ--VKLYHSIKPLFANKVTIL 286 (620)
T ss_pred eeeeeecCCccccCcc-----hhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHH--HHHHHHhHHHhcCCceEE
Confidence 3457899999997654 45555666666677888888999998643 223333 445555555 3578999
Q ss_pred EeeCCCcccccc
Q 003415 239 VVSKFDNRLKEF 250 (822)
Q Consensus 239 ViTK~D~~~~~~ 250 (822)
|+||+|.+.++.
T Consensus 287 vlNK~D~m~~ed 298 (620)
T KOG1490|consen 287 VLNKIDAMRPED 298 (620)
T ss_pred EeecccccCccc
Confidence 999999975543
No 270
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.0089 Score=67.95 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=44.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhc--CCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLA--SPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yi--k~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.+++||||||..+. +...+.+| .+++ ..|+. +++|++|+ ...+++...++.+.. ..-+=.|+||.
T Consensus 321 ~DvVLIDTaGRs~k--------d~~lm~EL-~~~lk~~~Pde-vlLVLsAT--tk~~d~~~i~~~F~~-~~idglI~TKL 387 (436)
T PRK11889 321 VDYILIDTAGKNYR--------ASETVEEM-IETMGQVEPDY-ICLTLSAS--MKSKDMIEIITNFKD-IHIDGIVFTKF 387 (436)
T ss_pred CCEEEEeCccccCc--------CHHHHHHH-HHHHhhcCCCe-EEEEECCc--cChHHHHHHHHHhcC-CCCCEEEEEcc
Confidence 58999999998542 22334444 2333 23554 45557765 234556777887766 34566789999
Q ss_pred Ccccccc
Q 003415 244 DNRLKEF 250 (822)
Q Consensus 244 D~~~~~~ 250 (822)
|-....+
T Consensus 388 DET~k~G 394 (436)
T PRK11889 388 DETASSG 394 (436)
T ss_pred cCCCCcc
Confidence 9864433
No 271
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.87 E-value=0.0039 Score=67.67 Aligned_cols=73 Identities=19% Similarity=0.306 Sum_probs=44.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHh-cCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSL-ASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Y-ik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D 244 (822)
.+++||||||-.+. +...+++|.+-. ..+|. .+++|++|+. ..+++.+.++.+.+ -.-+=.|+||.|
T Consensus 155 ~D~ViIDt~Gr~~~--------~~~~l~el~~~~~~~~~~-~~~LVl~a~~--~~~d~~~~~~~f~~-~~~~~~I~TKlD 222 (270)
T PRK06731 155 VDYILIDTAGKNYR--------ASETVEEMIETMGQVEPD-YICLTLSASM--KSKDMIEIITNFKD-IHIDGIVFTKFD 222 (270)
T ss_pred CCEEEEECCCCCcC--------CHHHHHHHHHHHhhhCCC-eEEEEEcCcc--CHHHHHHHHHHhCC-CCCCEEEEEeec
Confidence 68999999998542 223444443211 12344 4666777653 23456677788766 344556899999
Q ss_pred cccccc
Q 003415 245 NRLKEF 250 (822)
Q Consensus 245 ~~~~~~ 250 (822)
-....+
T Consensus 223 et~~~G 228 (270)
T PRK06731 223 ETASSG 228 (270)
T ss_pred CCCCcc
Confidence 865433
No 272
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=96.83 E-value=0.017 Score=57.82 Aligned_cols=134 Identities=21% Similarity=0.276 Sum_probs=77.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHHHH
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKSRT 140 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~a~ 140 (822)
.++||||..+||||||.-.+.-+|+ ++. + |++ ..+-++..|+
T Consensus 10 rlivigdstvgkssll~~ft~gkfa----els-----------d-----ptv---------------gvdffarlie--- 51 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFTEGKFA----ELS-----------D-----PTV---------------GVDFFARLIE--- 51 (213)
T ss_pred EEEEEcCCcccHHHHHHHHhcCccc----ccC-----------C-----Ccc---------------chHHHHHHHh---
Confidence 6899999999999999999988887 211 1 111 1122334443
Q ss_pred HHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch-
Q 003415 141 EALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS- 219 (822)
Q Consensus 141 e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n- 219 (822)
| ..| ....|-|-||.|- +..+.+.++|-.|.=.+ |+|-+-++.-+-
T Consensus 52 ---~-~pg---------------~riklqlwdtagq-------------erfrsitksyyrnsvgv-llvyditnr~sfe 98 (213)
T KOG0091|consen 52 ---L-RPG---------------YRIKLQLWDTAGQ-------------ERFRSITKSYYRNSVGV-LLVYDITNRESFE 98 (213)
T ss_pred ---c-CCC---------------cEEEEEEeeccch-------------HHHHHHHHHHhhcccce-EEEEeccchhhHH
Confidence 1 122 2345788898882 57899999999988644 445443322111
Q ss_pred --HHHHHHHH-HhC-CCCCcEEEEeeCCCccccccccHHHHHHHhhhcCC
Q 003415 220 --SLWLDAIR-EID-PTFRRTVIVVSKFDNRLKEFSDRWEVDRYLSASGY 265 (822)
Q Consensus 220 --q~il~lar-~~D-p~g~RTIgViTK~D~~~~~~s~~~~v~~~l~~~G~ 265 (822)
..|+..|+ .+- |..-=.+.|-+|.|+.-...-...+.+++-.-+|.
T Consensus 99 hv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM 148 (213)
T KOG0091|consen 99 HVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGM 148 (213)
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCc
Confidence 12444333 333 64444456889999952222223334445444553
No 273
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=96.83 E-value=0.0052 Score=62.87 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-|.|+++|..+|||++|+..|+.-.++
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~ 29 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTV 29 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS--
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcC
Confidence 478999999999999999999977554
No 274
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.77 E-value=0.0036 Score=60.03 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=24.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVR 87 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r 87 (822)
.|.+||..++||++|.++|-|-...++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk 29 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK 29 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc
Confidence 689999999999999999999877654
No 275
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.011 Score=66.95 Aligned_cols=67 Identities=22% Similarity=0.283 Sum_probs=44.0
Q ss_pred CCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc-------cchHH--HHHHHHHhCCCCC
Q 003415 164 HCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE-------WCSSL--WLDAIREIDPTFR 234 (822)
Q Consensus 164 ~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D-------~~nq~--il~lar~~Dp~g~ 234 (822)
+.+++||||+|| ++ ..|.+|+... ++.+ .-++|++|..+ ...|. -.-|++... -+
T Consensus 83 ~k~~~tIiDaPG-Hr-----------dFvknmItGa-sqAD-~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~ 146 (428)
T COG5256 83 DKYNFTIIDAPG-HR-----------DFVKNMITGA-SQAD-VAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IK 146 (428)
T ss_pred CCceEEEeeCCc-hH-----------HHHHHhhcch-hhcc-EEEEEEECCCCccccccccCCchhHHHHHHHhcC--Cc
Confidence 456999999999 32 3677777553 3445 44445566544 44443 445666654 57
Q ss_pred cEEEEeeCCCcc
Q 003415 235 RTVIVVSKFDNR 246 (822)
Q Consensus 235 RTIgViTK~D~~ 246 (822)
..|.++||.|.+
T Consensus 147 ~lIVavNKMD~v 158 (428)
T COG5256 147 QLIVAVNKMDLV 158 (428)
T ss_pred eEEEEEEccccc
Confidence 889999999995
No 276
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.0064 Score=68.04 Aligned_cols=81 Identities=22% Similarity=0.187 Sum_probs=49.6
Q ss_pred CCeEEEeCCCCccccCCCC-CCCchHHHHHHHHHhcCC-------------CCcEEEEEecCCcccchHHHHHHHHHhCC
Q 003415 166 PNLTIIDTPGFVLKAKKGE-PENTPDEILSMVKSLASP-------------PHRILVFLQQSSVEWCSSLWLDAIREIDP 231 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q-~~~~~~~v~~LV~~Yik~-------------~~sIILaVv~A~~D~~nq~il~lar~~Dp 231 (822)
.+||+|||||+...-.... -.-...-+...-..|+.+ -++.+.++.|....+...++. +.+++.
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~-~Mk~l~- 156 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIE-FMKKLS- 156 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHH-HHHHHh-
Confidence 5789999999987654321 123345567777788743 223333444544445555533 334443
Q ss_pred CCCcEEEEeeCCCcccc
Q 003415 232 TFRRTVIVVSKFDNRLK 248 (822)
Q Consensus 232 ~g~RTIgViTK~D~~~~ 248 (822)
..-.+|-||.|.|.+.+
T Consensus 157 ~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 157 KKVNLIPVIAKADTLTK 173 (366)
T ss_pred ccccccceeeccccCCH
Confidence 25788999999999644
No 277
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.0075 Score=68.26 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=42.1
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcC--CCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLAS--PPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik--~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.+++||||||..+. +.+.+.+| ..+.. +++ ++++|.++. ...+++.++++.+.. -.-+-.|+||.
T Consensus 286 ~D~VLIDTAGr~~~--------d~~~l~EL-~~l~~~~~p~-~~~LVLsag--~~~~d~~~i~~~f~~-l~i~glI~TKL 352 (407)
T PRK12726 286 VDHILIDTVGRNYL--------AEESVSEI-SAYTDVVHPD-LTCFTFSSG--MKSADVMTILPKLAE-IPIDGFIITKM 352 (407)
T ss_pred CCEEEEECCCCCcc--------CHHHHHHH-HHHhhccCCc-eEEEECCCc--ccHHHHHHHHHhcCc-CCCCEEEEEcc
Confidence 58999999998542 23344443 22332 344 455566664 334455667776654 34456689999
Q ss_pred Ccccc
Q 003415 244 DNRLK 248 (822)
Q Consensus 244 D~~~~ 248 (822)
|-...
T Consensus 353 DET~~ 357 (407)
T PRK12726 353 DETTR 357 (407)
T ss_pred cCCCC
Confidence 98543
No 278
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.0071 Score=69.24 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=42.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCC-CCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASP-PHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~-~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D 244 (822)
.+++||||||..+... ...+.+..+. +.+.. ...-+++|++|+.. ..++.+.++.+.. ..-+=.|+||.|
T Consensus 300 ~D~VLIDTaGr~~rd~-----~~l~eL~~~~-~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f~~-~~~~glIlTKLD 370 (432)
T PRK12724 300 SELILIDTAGYSHRNL-----EQLERMQSFY-SCFGEKDSVENLLVLSSTSS--YHHTLTVLKAYES-LNYRRILLTKLD 370 (432)
T ss_pred CCEEEEeCCCCCccCH-----HHHHHHHHHH-HhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHhcC-CCCCEEEEEccc
Confidence 6889999999864321 2223333332 22222 23345567777644 3344566666644 344567899999
Q ss_pred cccccc
Q 003415 245 NRLKEF 250 (822)
Q Consensus 245 ~~~~~~ 250 (822)
-....+
T Consensus 371 Et~~~G 376 (432)
T PRK12724 371 EADFLG 376 (432)
T ss_pred CCCCcc
Confidence 854443
No 279
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=96.68 E-value=0.0072 Score=67.36 Aligned_cols=81 Identities=23% Similarity=0.203 Sum_probs=50.7
Q ss_pred CCeEEEeCCCCccccCCCC-CCCchHHHHHHHHHhcCC--------------CCcEEEEEecCCcccchHHHHHHHHHhC
Q 003415 166 PNLTIIDTPGFVLKAKKGE-PENTPDEILSMVKSLASP--------------PHRILVFLQQSSVEWCSSLWLDAIREID 230 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q-~~~~~~~v~~LV~~Yik~--------------~~sIILaVv~A~~D~~nq~il~lar~~D 230 (822)
.+|++|||||++..-.... -+-...-++..-..|+.+ -++.+.++-|....+...++. ..+++.
T Consensus 82 ~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe-~Mk~ls 160 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIE-AMKRLS 160 (373)
T ss_pred EEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHH-HHHHHh
Confidence 5799999999987654321 123345567777778743 233444455555666666643 334453
Q ss_pred CCCCcEEEEeeCCCcccc
Q 003415 231 PTFRRTVIVVSKFDNRLK 248 (822)
Q Consensus 231 p~g~RTIgViTK~D~~~~ 248 (822)
. .-..|=||.|.|.+..
T Consensus 161 ~-~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 161 K-RVNLIPVIAKADTLTD 177 (373)
T ss_pred c-ccCeeeeeeccccCCH
Confidence 3 4677889999999643
No 280
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.02 Score=59.41 Aligned_cols=67 Identities=21% Similarity=0.224 Sum_probs=49.8
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK~ 243 (822)
-|-|.||-|= +.-+.|..+|.....-|+|++ +-+++.+- ..|++.+++.-+.+-..|.|-||+
T Consensus 62 ~lQiWDtaGQ-------------erf~ti~~sYyrgA~gi~Lvy-Ditne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~ 127 (207)
T KOG0078|consen 62 KLQIWDTAGQ-------------ERFRTITTAYYRGAMGILLVY-DITNEKSFENIRNWIKNIDEHASDDVVKILVGNKC 127 (207)
T ss_pred EEEEEEcccc-------------hhHHHHHHHHHhhcCeeEEEE-EccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccc
Confidence 4678888772 467889999999998666665 33333332 238888888888889999999999
Q ss_pred Cccc
Q 003415 244 DNRL 247 (822)
Q Consensus 244 D~~~ 247 (822)
|+..
T Consensus 128 D~~~ 131 (207)
T KOG0078|consen 128 DLEE 131 (207)
T ss_pred cccc
Confidence 9954
No 281
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.65 E-value=0.012 Score=58.62 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
|-++++|..+||||++++.|.+..
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~ 24 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcc
Confidence 789999999999999999998763
No 282
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.025 Score=69.18 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
-|++||.+++||||.+--|.+.-
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhH
Confidence 46899999999999999999974
No 283
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.013 Score=60.16 Aligned_cols=134 Identities=18% Similarity=0.247 Sum_probs=85.5
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHH
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKS 138 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~ 138 (822)
|=.|+|+||.++|||-|+-.+.+-.|+-+ -+-| |
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~--~~sT---I----------------------------------------- 42 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTES--YIST---I----------------------------------------- 42 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchh--hcce---e-----------------------------------------
Confidence 34799999999999999999998888722 1111 0
Q ss_pred HHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc--
Q 003415 139 RTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE-- 216 (822)
Q Consensus 139 a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D-- 216 (822)
|-.|. ...++++|... -|-|=||-|= +..+.++.+|-++.|.||++- |-+..
T Consensus 43 ---------GVDf~--~rt~e~~gk~i-KlQIWDTAGQ-------------ERFrtit~syYR~ahGii~vy-DiT~~~S 96 (205)
T KOG0084|consen 43 ---------GVDFK--IRTVELDGKTI-KLQIWDTAGQ-------------ERFRTITSSYYRGAHGIIFVY-DITKQES 96 (205)
T ss_pred ---------eeEEE--EEEeeecceEE-EEEeeecccc-------------HHHhhhhHhhccCCCeEEEEE-EcccHHH
Confidence 00111 12444555433 5778888772 678899999999999877765 22221
Q ss_pred cch-HHHHHHHHHhCCCCCcEEEEeeCCCccccccccHHHHHHHhhhcC
Q 003415 217 WCS-SLWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRWEVDRYLSASG 264 (822)
Q Consensus 217 ~~n-q~il~lar~~Dp~g~RTIgViTK~D~~~~~~s~~~~v~~~l~~~G 264 (822)
+.+ ..|++.++++-...-..+.|-||+|+....--...+.+.|...+|
T Consensus 97 F~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~ 145 (205)
T KOG0084|consen 97 FNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELG 145 (205)
T ss_pred hhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcC
Confidence 111 236666666666667889999999995433222223445655554
No 284
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.018 Score=59.24 Aligned_cols=69 Identities=20% Similarity=0.267 Sum_probs=45.9
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc--ccch-HHHHHHHHHh-CCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV--EWCS-SLWLDAIREI-DPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~--D~~n-q~il~lar~~-Dp~g~RTIgViT 241 (822)
.-|-|-||.| .+..+.|+-+||++.. +++.|-+-++ -+.+ ..|+.-++.- +++.-..+.|-|
T Consensus 71 vrLQlWDTAG-------------QERFrslipsY~Rds~-vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGn 136 (221)
T KOG0094|consen 71 VRLQLWDTAG-------------QERFRSLIPSYIRDSS-VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGN 136 (221)
T ss_pred EEEEEEeccc-------------HHHHhhhhhhhccCCe-EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcc
Confidence 3577889888 2678999999999987 5666655442 2222 2366544443 444456677889
Q ss_pred CCCcccc
Q 003415 242 KFDNRLK 248 (822)
Q Consensus 242 K~D~~~~ 248 (822)
|.|+..+
T Consensus 137 KtDL~dk 143 (221)
T KOG0094|consen 137 KTDLSDK 143 (221)
T ss_pred cccccch
Confidence 9999754
No 285
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=96.61 E-value=0.011 Score=60.66 Aligned_cols=64 Identities=20% Similarity=0.187 Sum_probs=39.8
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc--cchH--HHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE--WCSS--LWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D--~~nq--~il~lar~~Dp~g~RTIgViT 241 (822)
..|.|.||+|.-. .+...|+++.+.||| |.+.++. +.+. .|++.++...+ ....|.|.|
T Consensus 66 v~l~iwDTaG~~~---------------~~~~~~~~~ad~iil-v~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgN 128 (195)
T cd01873 66 VSLRLWDTFGDHD---------------KDRRFAYGRSDVVLL-CFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGC 128 (195)
T ss_pred EEEEEEeCCCChh---------------hhhcccCCCCCEEEE-EEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEE
Confidence 4688999999631 112347888875444 4444432 2222 25566665544 568899999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 129 K~DL~ 133 (195)
T cd01873 129 KLDLR 133 (195)
T ss_pred chhcc
Confidence 99984
No 286
>PRK12289 GTPase RsgA; Reviewed
Probab=96.58 E-value=0.004 Score=69.97 Aligned_cols=24 Identities=33% Similarity=0.249 Sum_probs=21.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
.+||+|.+|+|||||||+|+|..-
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc
Confidence 489999999999999999997643
No 287
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.57 E-value=0.015 Score=63.90 Aligned_cols=25 Identities=36% Similarity=0.274 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..+-|+|+|.+++||||+++.|.+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999999999875
No 288
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=96.57 E-value=0.025 Score=59.82 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=33.9
Q ss_pred ccCcchhhhHHHHHHH-HHHHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 30 TDSASTRASRFEAYNR-LQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 30 ~l~s~~~~~Lld~id~-Lr~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|..-+-..+++.+++ +-..|.+ + -|.|||..+.||||++|-|..-++-
T Consensus 23 ~lgyvGidtI~~Qm~~k~mk~GF~----F---NIMVVgqSglgkstlinTlf~s~v~ 72 (336)
T KOG1547|consen 23 LLGYVGIDTIIEQMRKKTMKTGFD----F---NIMVVGQSGLGKSTLINTLFKSHVS 72 (336)
T ss_pred ccccccHHHHHHHHHHHHHhccCc----e---EEEEEecCCCCchhhHHHHHHHHHh
Confidence 3555566666666543 3333332 2 4899999999999999999877665
No 289
>PRK12288 GTPase RsgA; Reviewed
Probab=96.56 E-value=0.0046 Score=69.44 Aligned_cols=25 Identities=36% Similarity=0.280 Sum_probs=22.1
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+++||..|+|||||||+|+|..-.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~ 231 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEI 231 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccce
Confidence 4899999999999999999987543
No 290
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=96.55 E-value=0.013 Score=57.91 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.|+|||+.++||||||..+++-.|+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~ 26 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYV 26 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC
Confidence 5899999999999999988877776
No 291
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.54 E-value=0.0048 Score=65.87 Aligned_cols=26 Identities=35% Similarity=0.170 Sum_probs=23.0
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-.++++|..++|||||||+|.|..-.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~ 146 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQ 146 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhc
Confidence 47999999999999999999987543
No 292
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.015 Score=68.23 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCchhhHHHHHhCC
Q 003415 60 PEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
--|+|||..++|||+++..|...
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999874
No 293
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.47 E-value=0.012 Score=68.82 Aligned_cols=114 Identities=25% Similarity=0.330 Sum_probs=70.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHHHH
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKSRT 140 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~a~ 140 (822)
+||+|||+++||||||=||++-.||+ .+=-|.| .+.|.
T Consensus 11 RIvliGD~G~GKtSLImSL~~eef~~---~VP~rl~--------------~i~IP------------------------- 48 (625)
T KOG1707|consen 11 RIVLIGDEGVGKTSLIMSLLEEEFVD---AVPRRLP--------------RILIP------------------------- 48 (625)
T ss_pred EEEEECCCCccHHHHHHHHHhhhccc---cccccCC--------------ccccC-------------------------
Confidence 89999999999999999999999983 1112222 11111
Q ss_pred HHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecC----Ccc
Q 003415 141 EALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQS----SVE 216 (822)
Q Consensus 141 e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A----~~D 216 (822)
..|++ +....+|||++-- .++ +.-+.+-+++.+ +|..|-+. +.|
T Consensus 49 --------advtP----------e~vpt~ivD~ss~---------~~~----~~~l~~EirkA~-vi~lvyavd~~~T~D 96 (625)
T KOG1707|consen 49 --------ADVTP----------ENVPTSIVDTSSD---------SDD----RLCLRKEIRKAD-VICLVYAVDDESTVD 96 (625)
T ss_pred --------CccCc----------CcCceEEEecccc---------cch----hHHHHHHHhhcC-EEEEEEecCChHHhh
Confidence 01222 2234899998721 111 112223344455 55555433 345
Q ss_pred cchHHHHHHHHHhC--CCCCcEEEEeeCCCcccc
Q 003415 217 WCSSLWLDAIREID--PTFRRTVIVVSKFDNRLK 248 (822)
Q Consensus 217 ~~nq~il~lar~~D--p~g~RTIgViTK~D~~~~ 248 (822)
--+.-||-+.|+.- +...+.|.|-+|.|....
T Consensus 97 ~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 97 RISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred hhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 55667999999874 345778999999999643
No 294
>PRK10867 signal recognition particle protein; Provisional
Probab=96.39 E-value=0.013 Score=67.50 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=46.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
.+++||||||..+.. +.....+..+ ...+ +|..+ |+|+++.. .+++.+.++.+.....-+=.|+||.|-
T Consensus 184 ~DvVIIDTaGrl~~d-----~~lm~eL~~i-~~~v-~p~ev-llVlda~~---gq~av~~a~~F~~~~~i~giIlTKlD~ 252 (433)
T PRK10867 184 YDVVIVDTAGRLHID-----EELMDELKAI-KAAV-NPDEI-LLVVDAMT---GQDAVNTAKAFNEALGLTGVILTKLDG 252 (433)
T ss_pred CCEEEEeCCCCcccC-----HHHHHHHHHH-HHhh-CCCeE-EEEEeccc---HHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 689999999975421 1222223222 2334 45444 67777653 467788888887555567789999997
Q ss_pred ccccc
Q 003415 246 RLKEF 250 (822)
Q Consensus 246 ~~~~~ 250 (822)
...++
T Consensus 253 ~~rgG 257 (433)
T PRK10867 253 DARGG 257 (433)
T ss_pred ccccc
Confidence 44444
No 295
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=96.36 E-value=0.012 Score=66.47 Aligned_cols=36 Identities=22% Similarity=0.144 Sum_probs=28.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcc-cccccccccccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRF-NVREVEMGTRRP 96 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~f-p~r~~g~cTR~P 96 (822)
.+.+||-+++|||||+++|++-.. ++..-.-||--|
T Consensus 4 k~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p 40 (368)
T TIGR00092 4 SGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEP 40 (368)
T ss_pred eEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCC
Confidence 678999999999999999999986 532223466655
No 296
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.35 E-value=0.015 Score=57.04 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
....+++||.+++||||++++|.+..
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~ 125 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH 125 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998754
No 297
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.27 E-value=0.026 Score=55.74 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=19.3
Q ss_pred EEEEcCCCCchhhHHHHHhCC
Q 003415 62 IVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 62 IVVVG~QSsGKSSlLEAL~G~ 82 (822)
|.++|..++||||++..|...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999865
No 298
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.24 E-value=0.079 Score=52.88 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=38.4
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
.+++|||+||..... ......+..+. .. ..+. -+++|+++... .++++.+.++.....-+-.|+||.|.
T Consensus 83 ~d~viiDt~g~~~~~-----~~~l~~l~~l~-~~-~~~~-~~~lVv~~~~~---~~~~~~~~~~~~~~~~~~viltk~D~ 151 (173)
T cd03115 83 FDVVIVDTAGRLQID-----ENLMEELKKIK-RV-VKPD-EVLLVVDAMTG---QDAVNQAKAFNEALGITGVILTKLDG 151 (173)
T ss_pred CCEEEEECcccchhh-----HHHHHHHHHHH-hh-cCCC-eEEEEEECCCC---hHHHHHHHHHHhhCCCCEEEEECCcC
Confidence 678999999985321 12223333332 22 2344 44556666432 23344455443222357789999998
Q ss_pred ccc
Q 003415 246 RLK 248 (822)
Q Consensus 246 ~~~ 248 (822)
...
T Consensus 152 ~~~ 154 (173)
T cd03115 152 DAR 154 (173)
T ss_pred CCC
Confidence 544
No 299
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.20 E-value=0.012 Score=64.32 Aligned_cols=26 Identities=35% Similarity=0.266 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-.++++|..++|||||||+|+|...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~ 187 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDL 187 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhc
Confidence 57999999999999999999998766
No 300
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.032 Score=63.30 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
-|++||..++|||+++-.|.+.-
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999863
No 301
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.11 E-value=0.085 Score=60.20 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=42.1
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
.+++||||||..+.. ......+..++... . ++.-+++|++|+.. ..++.++++.+.+- .-+=.|+||.|-
T Consensus 255 ~DlVLIDTaGr~~~~-----~~~l~el~~~l~~~-~-~~~e~~LVlsat~~--~~~~~~~~~~~~~~-~~~~~I~TKlDe 324 (388)
T PRK12723 255 FDLVLVDTIGKSPKD-----FMKLAEMKELLNAC-G-RDAEFHLAVSSTTK--TSDVKEIFHQFSPF-SYKTVIFTKLDE 324 (388)
T ss_pred CCEEEEcCCCCCccC-----HHHHHHHHHHHHhc-C-CCCeEEEEEcCCCC--HHHHHHHHHHhcCC-CCCEEEEEeccC
Confidence 689999999986421 11122333333322 2 23346677777755 33444666666432 345578999998
Q ss_pred cccc
Q 003415 246 RLKE 249 (822)
Q Consensus 246 ~~~~ 249 (822)
....
T Consensus 325 t~~~ 328 (388)
T PRK12723 325 TTCV 328 (388)
T ss_pred CCcc
Confidence 5443
No 302
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.10 E-value=0.026 Score=58.37 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|++||.+++||+|.+=-|.-.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~ 24 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAAR 24 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHH
Confidence 3789999999999999888754
No 303
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.02 E-value=0.034 Score=59.25 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=23.5
Q ss_pred EEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCC
Q 003415 64 ALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDP 105 (822)
Q Consensus 64 VVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~ 105 (822)
|+|..+|||||+..++..+- ... -|.+..|.|-++.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~-~~~-----~~~~~~vNLDPa~ 36 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL-ESN-----GRDVYIVNLDPAV 36 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH-TTT------S-EEEEE--TT-
T ss_pred CCCCCCCCHHHHHHHHHHHH-Hhc-----cCCceEEEcchHh
Confidence 79999999999999999853 211 2777777875443
No 304
>PRK00098 GTPase RsgA; Reviewed
Probab=96.01 E-value=0.017 Score=63.36 Aligned_cols=25 Identities=36% Similarity=0.191 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..++|||||||+|+|..-+
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~ 190 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLEL 190 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCC
Confidence 6899999999999999999997644
No 305
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.058 Score=62.85 Aligned_cols=114 Identities=18% Similarity=0.253 Sum_probs=75.7
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
...|-++|+|+-=-||||||..|=+-.+-..+.|..|-.
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQh----------------------------------------- 41 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQH----------------------------------------- 41 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeE-----------------------------------------
Confidence 467999999999999999999997776654443333311
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeec--CCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCC
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYA--HCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSS 214 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p--~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~ 214 (822)
.| -..+..+ ..|-|||+||||--.- .+| +.==.+-..|.++|++++
T Consensus 42 ----------IG--------A~~v~~~~~~~~~itFiDTPGHeAF-------------t~m-RaRGa~vtDIaILVVa~d 89 (509)
T COG0532 42 ----------IG--------AYQVPLDVIKIPGITFIDTPGHEAF-------------TAM-RARGASVTDIAILVVAAD 89 (509)
T ss_pred ----------ee--------eEEEEeccCCCceEEEEcCCcHHHH-------------HHH-HhcCCccccEEEEEEEcc
Confidence 00 0111111 3588999999994221 111 111112334888888888
Q ss_pred cccchHH--HHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 215 VEWCSSL--WLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 215 ~D~~nq~--il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
+.+--|+ +++.+|.+ +-++|..+||.|+.
T Consensus 90 DGv~pQTiEAI~hak~a---~vP~iVAiNKiDk~ 120 (509)
T COG0532 90 DGVMPQTIEAINHAKAA---GVPIVVAINKIDKP 120 (509)
T ss_pred CCcchhHHHHHHHHHHC---CCCEEEEEecccCC
Confidence 7777665 67788876 78999999999994
No 306
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.99 E-value=0.042 Score=63.41 Aligned_cols=74 Identities=16% Similarity=0.269 Sum_probs=46.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
.+++||||||..+.. ......+..+. ..+ +|+.+ ++|+++. ..+++.+.|+.+...-.-+=.|+||.|-
T Consensus 183 ~DvVIIDTaGr~~~d-----~~l~~eL~~i~-~~~-~p~e~-lLVvda~---tgq~~~~~a~~f~~~v~i~giIlTKlD~ 251 (428)
T TIGR00959 183 FDVVIVDTAGRLQID-----EELMEELAAIK-EIL-NPDEI-LLVVDAM---TGQDAVNTAKTFNERLGLTGVVLTKLDG 251 (428)
T ss_pred CCEEEEeCCCccccC-----HHHHHHHHHHH-Hhh-CCceE-EEEEecc---chHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 689999999975421 12233333332 223 45544 6666665 3467788888886544566778999997
Q ss_pred ccccc
Q 003415 246 RLKEF 250 (822)
Q Consensus 246 ~~~~~ 250 (822)
....+
T Consensus 252 ~~~~G 256 (428)
T TIGR00959 252 DARGG 256 (428)
T ss_pred ccccc
Confidence 44444
No 307
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=95.89 E-value=0.19 Score=59.81 Aligned_cols=140 Identities=16% Similarity=0.133 Sum_probs=79.5
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
-.+--+.++|+=.+|||+++..|.+..-| .. +.+++..|++.... ...+
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp-~~-----~~~~e~~lrytD~l-------------------------~~E~ 174 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHP-DF-----SKNTEADLRYTDTL-------------------------FYEQ 174 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccc-cc-----cccccccccccccc-------------------------hhhH
Confidence 34446789999999999999999998776 22 22333333332110 0000
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeec--CCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCC
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYA--HCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSS 214 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p--~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~ 214 (822)
+ -|.++-..|..|-.... .-.-++|+||||-..-. .++. .-|...+ .+++|+++-
T Consensus 175 ----e-----Rg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~------------DE~t-a~l~~sD-gvVlvvDv~ 231 (971)
T KOG0468|consen 175 ----E-----RGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFS------------DETT-ASLRLSD-GVVLVVDVA 231 (971)
T ss_pred ----h-----cCceEeecceEEEEecCcCceeeeeeecCCCcccch------------HHHH-HHhhhcc-eEEEEEEcc
Confidence 0 12233344444444432 12358899999975431 2222 2233444 455566665
Q ss_pred cccchHHHHHHHHHhCCCCCcEEEEeeCCCccccccc
Q 003415 215 VEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLKEFS 251 (822)
Q Consensus 215 ~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~~~~s 251 (822)
.+..-+. -++++..-.+....+.||||.|+++-+..
T Consensus 232 EGVmlnt-Er~ikhaiq~~~~i~vviNKiDRLilELk 267 (971)
T KOG0468|consen 232 EGVMLNT-ERIIKHAIQNRLPIVVVINKVDRLILELK 267 (971)
T ss_pred cCceeeH-HHHHHHHHhccCcEEEEEehhHHHHHHhc
Confidence 4543221 34555555667889999999999765544
No 308
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.86 E-value=0.059 Score=62.19 Aligned_cols=73 Identities=12% Similarity=0.172 Sum_probs=42.1
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
.+++||||||..... ......+..++.. ...+. -+++|++++. ...++.++++.+..-+- +=.|+||+|-
T Consensus 300 ~DlVlIDt~G~~~~d-----~~~~~~L~~ll~~-~~~~~-~~~LVl~a~~--~~~~l~~~~~~f~~~~~-~~vI~TKlDe 369 (424)
T PRK05703 300 CDVILIDTAGRSQRD-----KRLIEELKALIEF-SGEPI-DVYLVLSATT--KYEDLKDIYKHFSRLPL-DGLIFTKLDE 369 (424)
T ss_pred CCEEEEeCCCCCCCC-----HHHHHHHHHHHhc-cCCCC-eEEEEEECCC--CHHHHHHHHHHhCCCCC-CEEEEecccc
Confidence 689999999984321 1223344555542 22333 3455566653 33445566666665432 4578999998
Q ss_pred ccc
Q 003415 246 RLK 248 (822)
Q Consensus 246 ~~~ 248 (822)
...
T Consensus 370 t~~ 372 (424)
T PRK05703 370 TSS 372 (424)
T ss_pred ccc
Confidence 533
No 309
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.83 E-value=0.059 Score=69.64 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=39.2
Q ss_pred hhhhHHHHHHHHHHHHHhc-CCCCCCCEEEEEcCCCCchhhHHHHHhCCcccc
Q 003415 35 TRASRFEAYNRLQAAAVAF-GEKLPIPEIVALGGQSDGKSSLLEALLGFRFNV 86 (822)
Q Consensus 35 ~~~~Lld~id~Lr~~g~~~-~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~ 86 (822)
-+..+-+++..|+.....- ..-..||=.+|+|.++|||||+|..- |.+||.
T Consensus 86 l~~~~~~a~~~Lk~~~~~~~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl 137 (1169)
T TIGR03348 86 LRARFNEALALLKRSRLGGRRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKFPL 137 (1169)
T ss_pred HHHHHHHHHHHHhhccccCchhhhcCCCEEEECCCCCchhHHHHhC-CCCCcC
Confidence 3456777778887654210 12469999999999999999999987 888874
No 310
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.80 E-value=0.076 Score=61.13 Aligned_cols=73 Identities=12% Similarity=0.173 Sum_probs=40.6
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
.++.||||+|..+.. ....+.+..+. . ...+. =+++|++|+.. .+++.++++.+.. -.-+=.|+||.|-
T Consensus 270 ~d~VLIDTaGrsqrd-----~~~~~~l~~l~-~-~~~~~-~~~LVl~at~~--~~~~~~~~~~f~~-~~~~~~I~TKlDE 338 (420)
T PRK14721 270 KHMVLIDTVGMSQRD-----QMLAEQIAMLS-Q-CGTQV-KHLLLLNATSS--GDTLDEVISAYQG-HGIHGCIITKVDE 338 (420)
T ss_pred CCEEEecCCCCCcch-----HHHHHHHHHHh-c-cCCCc-eEEEEEcCCCC--HHHHHHHHHHhcC-CCCCEEEEEeeeC
Confidence 588999999986431 11222233221 1 12233 34556666633 3445566666655 3445568999998
Q ss_pred cccc
Q 003415 246 RLKE 249 (822)
Q Consensus 246 ~~~~ 249 (822)
....
T Consensus 339 t~~~ 342 (420)
T PRK14721 339 AASL 342 (420)
T ss_pred CCCc
Confidence 5443
No 311
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=95.61 E-value=0.033 Score=67.76 Aligned_cols=137 Identities=17% Similarity=0.131 Sum_probs=76.1
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHH
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKS 138 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~ 138 (822)
+--|.|+|+--+||||+.|.|+=. +|...+ +-++.. |....|. ..+
T Consensus 10 ~RNigI~aHidaGKTTltE~lL~~------tG~i~k-~G~v~~---------------------g~~~~D~------~e~ 55 (697)
T COG0480 10 IRNIGIVAHIDAGKTTLTERILFY------TGIISK-IGEVHD---------------------GAATMDW------MEQ 55 (697)
T ss_pred ceEEEEEeccCCChHHHHHHHHHH------cCCcCC-CccccC---------------------CCccCCC------cHH
Confidence 345889999999999999999822 244333 111100 0011221 122
Q ss_pred HHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccc
Q 003415 139 RTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWC 218 (822)
Q Consensus 139 a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~ 218 (822)
..+ -|-.+....+.+.-++ -..++||||||-+.-.. + |.+-|+--+ -.++|++|.....
T Consensus 56 Eqe-----RGITI~saa~s~~~~~--~~~iNlIDTPGHVDFt~--------E-----V~rslrvlD-gavvVvdaveGV~ 114 (697)
T COG0480 56 EQE-----RGITITSAATTLFWKG--DYRINLIDTPGHVDFTI--------E-----VERSLRVLD-GAVVVVDAVEGVE 114 (697)
T ss_pred HHh-----cCCEEeeeeeEEEEcC--ceEEEEeCCCCccccHH--------H-----HHHHHHhhc-ceEEEEECCCCee
Confidence 221 1222333333333332 35789999999864321 1 222233333 3456667776776
Q ss_pred hHHHHHHHHHhCCCCCcEEEEeeCCCccccccc
Q 003415 219 SSLWLDAIREIDPTFRRTVIVVSKFDNRLKEFS 251 (822)
Q Consensus 219 nq~il~lar~~Dp~g~RTIgViTK~D~~~~~~s 251 (822)
.|. -.+.|+++..+-+.|.++||.|+..-.+.
T Consensus 115 ~QT-Etv~rqa~~~~vp~i~fiNKmDR~~a~~~ 146 (697)
T COG0480 115 PQT-ETVWRQADKYGVPRILFVNKMDRLGADFY 146 (697)
T ss_pred ecH-HHHHHHHhhcCCCeEEEEECccccccChh
Confidence 664 33445556668999999999999755443
No 312
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.58 E-value=0.13 Score=56.33 Aligned_cols=25 Identities=36% Similarity=0.243 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..+.|-+-|-+++||||++++|.-.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~ 74 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRE 74 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHH
Confidence 5678999999999999999999754
No 313
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=0.077 Score=54.51 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=23.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.||++|+.|+||||++....--+|.
T Consensus 7 KvvLLG~~~VGKSSlV~Rfvk~~F~ 31 (200)
T KOG0092|consen 7 KVVLLGDSGVGKSSLVLRFVKDQFH 31 (200)
T ss_pred EEEEECCCCCCchhhhhhhhhCccc
Confidence 6899999999999999999888887
No 314
>PRK14845 translation initiation factor IF-2; Provisional
Probab=95.44 E-value=0.046 Score=69.16 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=44.6
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCcEEEEeeC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~RTIgViTK 242 (822)
.|.++|+||||.- ....+...+....+ ++++|++++..+..+. .+.+++.. +.+.|.|+||
T Consensus 525 ~p~i~fiDTPGhe-------------~F~~lr~~g~~~aD-ivlLVVDa~~Gi~~qT~e~I~~lk~~---~iPiIVViNK 587 (1049)
T PRK14845 525 IPGLLFIDTPGHE-------------AFTSLRKRGGSLAD-LAVLVVDINEGFKPQTIEAINILRQY---KTPFVVAANK 587 (1049)
T ss_pred cCcEEEEECCCcH-------------HHHHHHHhhcccCC-EEEEEEECcccCCHhHHHHHHHHHHc---CCCEEEEEEC
Confidence 4789999999931 22344555666666 6677778876665553 44555543 5789999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
+|+.
T Consensus 588 iDL~ 591 (1049)
T PRK14845 588 IDLI 591 (1049)
T ss_pred CCCc
Confidence 9984
No 315
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=95.41 E-value=0.044 Score=61.53 Aligned_cols=25 Identities=32% Similarity=0.260 Sum_probs=22.4
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCcc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
.++-+||-+|+||||+.+|||.-..
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a 27 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGA 27 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCc
Confidence 4788999999999999999998763
No 316
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=95.28 E-value=0.025 Score=60.22 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
-.++.||=+|+||||||-.|++..
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~ 86 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTH 86 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcch
Confidence 379999999999999999998754
No 317
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.22 E-value=0.096 Score=55.46 Aligned_cols=49 Identities=18% Similarity=0.357 Sum_probs=36.3
Q ss_pred HHHHHhcCCCCcEEEEEecC-CcccchH-HHHHHHHHhCCCCCcEEEEeeCC
Q 003415 194 SMVKSLASPPHRILVFLQQS-SVEWCSS-LWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 194 ~LV~~Yik~~~sIILaVv~A-~~D~~nq-~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.+.+..+.+|. ||||=.|. +-|..+. .++.+.+++..+...||.++|+=
T Consensus 152 AIARAL~~~P~-iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd 202 (226)
T COG1136 152 AIARALINNPK-IILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD 202 (226)
T ss_pred HHHHHHhcCCC-eEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 45566677776 99998874 4465554 48888888876677899999983
No 318
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=95.17 E-value=0.05 Score=59.64 Aligned_cols=44 Identities=20% Similarity=0.110 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHhCCcc
Q 003415 38 SRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 38 ~Lld~id~Lr~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
.|....-+|.... +..-.-+.+-|||-+|+||||||||+--+.+
T Consensus 125 il~~~~~~l~r~i---rt~~~~~~vmVvGvPNVGKSsLINa~r~~~L 168 (335)
T KOG2485|consen 125 ILTILSEELVRFI---RTLNSEYNVMVVGVPNVGKSSLINALRNVHL 168 (335)
T ss_pred HHHHHHHHHHHhh---cccCCceeEEEEcCCCCChHHHHHHHHHHHh
Confidence 3444445555443 2334668999999999999999999987765
No 319
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=95.10 E-value=0.021 Score=66.78 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=50.1
Q ss_pred CccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc-ccc------hH-
Q 003415 149 TSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV-EWC------SS- 220 (822)
Q Consensus 149 ~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~-D~~------nq- 220 (822)
.+|+.++-+..++ ++-..+||+|.||.-. .+-+|+..- .+.+.-||+ ++|+. .|. .|
T Consensus 239 rGvTm~v~~~~fe-s~~~~~tliDaPGhkd------------Fi~nmi~g~-sqaD~avLv-vd~s~~~FE~gfd~~gQt 303 (603)
T KOG0458|consen 239 RGVTMDVKTTWFE-SKSKIVTLIDAPGHKD------------FIPNMISGA-SQADVAVLV-VDASTGEFESGFDPGGQT 303 (603)
T ss_pred cceeEEeeeEEEe-cCceeEEEecCCCccc------------cchhhhccc-cccceEEEE-EECCcchhhhccCCCCch
Confidence 3777776666666 5678999999999311 233444332 223334444 44443 232 22
Q ss_pred -HHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 221 -LWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 221 -~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
+...+++.+. -+..|+++||.|++
T Consensus 304 rEha~llr~Lg--i~qlivaiNKmD~V 328 (603)
T KOG0458|consen 304 REHALLLRSLG--ISQLIVAINKMDLV 328 (603)
T ss_pred HHHHHHHHHcC--cceEEEEeeccccc
Confidence 4666777775 57889999999996
No 320
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=0.24 Score=48.97 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=49.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc--chHHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW--CSSLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~--~nq~il~lar~~Dp~g~RTIgViTK~ 243 (822)
..|-+-||.|- +..+.+...|++....+||+--..|.+- +-|+|...++.+--.....|.|-||+
T Consensus 70 iklQiwDTagq-------------EryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKC 136 (193)
T KOG0093|consen 70 IKLQIWDTAGQ-------------ERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKC 136 (193)
T ss_pred EEEEEEecccc-------------hhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEeccc
Confidence 45678888874 3478889999999999999985544332 12445556666655678999999999
Q ss_pred Cc
Q 003415 244 DN 245 (822)
Q Consensus 244 D~ 245 (822)
|+
T Consensus 137 Dm 138 (193)
T KOG0093|consen 137 DM 138 (193)
T ss_pred CC
Confidence 98
No 321
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.97 E-value=0.26 Score=57.64 Aligned_cols=70 Identities=16% Similarity=0.243 Sum_probs=47.4
Q ss_pred EEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCcE
Q 003415 159 RAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRRT 236 (822)
Q Consensus 159 ~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~RT 236 (822)
.|.-|..--.||.||||--. ...| +.-=.+--.|+++|+.|.+.+--|. +.+.|+.. +-..
T Consensus 194 ~V~~p~G~~iTFLDTPGHaA-------------F~aM-RaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A---~Vpi 256 (683)
T KOG1145|consen 194 TVTLPSGKSITFLDTPGHAA-------------FSAM-RARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA---NVPI 256 (683)
T ss_pred EEecCCCCEEEEecCCcHHH-------------HHHH-HhccCccccEEEEEEEccCCccHhHHHHHHHHHhc---CCCE
Confidence 34445557799999999522 1222 1112233458999998987777665 56667665 5799
Q ss_pred EEEeeCCCc
Q 003415 237 VIVVSKFDN 245 (822)
Q Consensus 237 IgViTK~D~ 245 (822)
|..+||+|+
T Consensus 257 VvAinKiDk 265 (683)
T KOG1145|consen 257 VVAINKIDK 265 (683)
T ss_pred EEEEeccCC
Confidence 999999997
No 322
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=94.89 E-value=0.075 Score=55.01 Aligned_cols=68 Identities=19% Similarity=0.098 Sum_probs=41.1
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch----HHHHHHHHHhCCCCCcEEEEe
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS----SLWLDAIREIDPTFRRTVIVV 240 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n----q~il~lar~~Dp~g~RTIgVi 240 (822)
...|-|+||+|.. ....|=..||...+..+|+. +.++.-+- +-..++.+..+.+.-++|.|-
T Consensus 50 ~~~l~ilDt~g~~-------------~~~~~~~~~~~~~~gF~lVy-sitd~~SF~~~~~l~~~I~r~~~~~~~PivlVG 115 (196)
T KOG0395|consen 50 VCMLEILDTAGQE-------------EFSAMRDLYIRNGDGFLLVY-SITDRSSFEEAKQLREQILRVKGRDDVPIILVG 115 (196)
T ss_pred EEEEEEEcCCCcc-------------cChHHHHHhhccCcEEEEEE-ECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEE
Confidence 3567799999921 12345578999998885554 33321111 112233333355556899999
Q ss_pred eCCCcc
Q 003415 241 SKFDNR 246 (822)
Q Consensus 241 TK~D~~ 246 (822)
||.|+.
T Consensus 116 NK~Dl~ 121 (196)
T KOG0395|consen 116 NKCDLE 121 (196)
T ss_pred Ecccch
Confidence 999994
No 323
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.77 E-value=0.038 Score=55.60 Aligned_cols=24 Identities=46% Similarity=0.462 Sum_probs=22.4
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
..+|++|..++|||||||+|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 589999999999999999999974
No 324
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.49 E-value=0.18 Score=52.86 Aligned_cols=68 Identities=19% Similarity=0.171 Sum_probs=39.3
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCC--CCcEEEEEecCCcccch-H-------HHHHHHHHhCCCCCcE
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASP--PHRILVFLQQSSVEWCS-S-------LWLDAIREIDPTFRRT 236 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~--~~sIILaVv~A~~D~~n-q-------~il~lar~~Dp~g~RT 236 (822)
+.+|||+||-. .++.-...|.+. .--=|++|+++....-+ . +++-.++- -.++-..
T Consensus 83 ~~~LVD~PGH~-------------rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~-~~~~~~v 148 (238)
T KOG0090|consen 83 NVTLVDLPGHS-------------RLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRV-KKNKPPV 148 (238)
T ss_pred ceEEEeCCCcH-------------HHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhcc-ccCCCCE
Confidence 47999999953 345555667774 22235555555433322 1 22322221 2346788
Q ss_pred EEEeeCCCcccc
Q 003415 237 VIVVSKFDNRLK 248 (822)
Q Consensus 237 IgViTK~D~~~~ 248 (822)
+...||.|+..-
T Consensus 149 LIaCNKqDl~tA 160 (238)
T KOG0090|consen 149 LIACNKQDLFTA 160 (238)
T ss_pred EEEecchhhhhc
Confidence 999999999643
No 325
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.26 E-value=0.035 Score=56.90 Aligned_cols=28 Identities=32% Similarity=0.498 Sum_probs=25.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVRE 88 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r~ 88 (822)
+++|+|..+||||+|||-|.|+..|..|
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P~~G 54 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETPASG 54 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCCCCc
Confidence 5789999999999999999999999654
No 326
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=0.83 Score=47.06 Aligned_cols=136 Identities=21% Similarity=0.307 Sum_probs=84.7
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHH
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKS 138 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~ 138 (822)
+=..|+|||-++|||+||-..+..+|-|+- +..|- -+||..-.
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~h-------d~TiG-------------------vefg~r~~----------- 48 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVH-------DLTIG-------------------VEFGARMV----------- 48 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccc-------cceee-------------------eeeceeEE-----------
Confidence 447899999999999999999999986442 01111 12331100
Q ss_pred HHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEe-cCCccc
Q 003415 139 RTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQ-QSSVEW 217 (822)
Q Consensus 139 a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv-~A~~D~ 217 (822)
.+...+| -|-|-||-|- +..++++++|.+...-.||+-- .....+
T Consensus 49 -----------~id~k~I----------KlqiwDtaGq-------------e~frsv~~syYr~a~GalLVydit~r~sF 94 (216)
T KOG0098|consen 49 -----------TIDGKQI----------KLQIWDTAGQ-------------ESFRSVTRSYYRGAAGALLVYDITRRESF 94 (216)
T ss_pred -----------EEcCceE----------EEEEEecCCc-------------HHHHHHHHHHhccCcceEEEEEccchhhH
Confidence 1122222 4567888883 4678999999998876666542 111112
Q ss_pred -chHHHHHHHHHhCCCCCcEEEEeeCCCccccccccHHHHHHHhhhcCC
Q 003415 218 -CSSLWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRWEVDRYLSASGY 265 (822)
Q Consensus 218 -~nq~il~lar~~Dp~g~RTIgViTK~D~~~~~~s~~~~v~~~l~~~G~ 265 (822)
+-..||.-+++......-++.+-||.|+.-...-...+.+.|-..+|.
T Consensus 95 ~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL 143 (216)
T KOG0098|consen 95 NHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL 143 (216)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc
Confidence 223477777877544577788889999954443334455666666664
No 327
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.17 E-value=0.96 Score=52.04 Aligned_cols=74 Identities=11% Similarity=0.168 Sum_probs=51.1
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHH-HhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVK-SLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~-~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~ 243 (822)
..++.||||-|-.+- +.+.+.+|.. +-+-+|+-+ |+|+||. .-|++...|+.++-...=|=.|+||.
T Consensus 182 ~~DvvIvDTAGRl~i--------de~Lm~El~~Ik~~~~P~E~-llVvDam---~GQdA~~~A~aF~e~l~itGvIlTKl 249 (451)
T COG0541 182 GYDVVIVDTAGRLHI--------DEELMDELKEIKEVINPDET-LLVVDAM---IGQDAVNTAKAFNEALGITGVILTKL 249 (451)
T ss_pred CCCEEEEeCCCcccc--------cHHHHHHHHHHHhhcCCCeE-EEEEecc---cchHHHHHHHHHhhhcCCceEEEEcc
Confidence 468999999997653 3445555553 334456644 5555554 35788899999988877888899999
Q ss_pred Ccccccc
Q 003415 244 DNRLKEF 250 (822)
Q Consensus 244 D~~~~~~ 250 (822)
|---.++
T Consensus 250 DGdaRGG 256 (451)
T COG0541 250 DGDARGG 256 (451)
T ss_pred cCCCcch
Confidence 9844443
No 328
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=93.85 E-value=0.072 Score=61.75 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCcc
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
.-.|-.||=+|+||||+||||+|.+-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk 339 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK 339 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce
Confidence 34678899999999999999999874
No 329
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=93.82 E-value=0.34 Score=51.64 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=41.1
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCC-cccch-----HHHHHHHHHhCCCCCcEEEE
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSS-VEWCS-----SLWLDAIREIDPTFRRTVIV 239 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~-~D~~n-----q~il~lar~~Dp~g~RTIgV 239 (822)
.+|.|.|.||-..-..... .... ....++-. .++.|+|+. .|+.. ..+++.+.++.| ....-..
T Consensus 48 ~~l~iwD~pGq~~~~~~~~-~~~~-------~~if~~v~-~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vf 117 (232)
T PF04670_consen 48 LPLNIWDCPGQDDFMENYF-NSQR-------EEIFSNVG-VLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVF 117 (232)
T ss_dssp CEEEEEEE-SSCSTTHTTH-TCCH-------HHHHCTES-EEEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEE
T ss_pred cEEEEEEcCCccccccccc-cccH-------HHHHhccC-EEEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEE
Confidence 5789999999754322100 0111 11233333 667777877 55543 236777889998 4667777
Q ss_pred eeCCCccc
Q 003415 240 VSKFDNRL 247 (822)
Q Consensus 240 iTK~D~~~ 247 (822)
+-|.|++.
T Consensus 118 iHK~D~l~ 125 (232)
T PF04670_consen 118 IHKMDLLS 125 (232)
T ss_dssp EE-CCCS-
T ss_pred EeecccCC
Confidence 89999853
No 330
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=93.78 E-value=0.38 Score=56.17 Aligned_cols=28 Identities=39% Similarity=0.623 Sum_probs=24.3
Q ss_pred CCCCCCEEE-EEcCCCCchhhHHHHHhCC
Q 003415 55 EKLPIPEIV-ALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 55 ~~i~lPqIV-VVG~QSsGKSSlLEAL~G~ 82 (822)
++.+.|-|| |||.++.|||+||.+|+..
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr 92 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRR 92 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHH
Confidence 357888888 9999999999999999853
No 331
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=93.76 E-value=0.028 Score=65.22 Aligned_cols=30 Identities=40% Similarity=0.641 Sum_probs=27.4
Q ss_pred CCCCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 56 KLPIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 56 ~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++---|.|.|.||+|||+|||-|.|-.|-
T Consensus 34 Gl~YhVVavmG~QSSGKSTLLN~LFgTnF~ 63 (772)
T KOG2203|consen 34 GLSYHVVAVMGSQSSGKSTLLNHLFGTNFR 63 (772)
T ss_pred CcceeEEEEecCcccchHHHHHHHhccChH
Confidence 467778999999999999999999999985
No 332
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.75 E-value=0.14 Score=60.00 Aligned_cols=72 Identities=13% Similarity=0.260 Sum_probs=40.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
.+.+||||+|..+... ...+ ...++..... +.. .++|++++... ..+.+.++.+... ..+=+|+||.|-
T Consensus 335 ~d~VLIDTaGr~~~d~-----~~~e-~~~~l~~~~~-p~e-~~LVLdAt~~~--~~l~~i~~~f~~~-~~~g~IlTKlDe 403 (484)
T PRK06995 335 KHIVLIDTIGMSQRDR-----MVSE-QIAMLHGAGA-PVK-RLLLLNATSHG--DTLNEVVQAYRGP-GLAGCILTKLDE 403 (484)
T ss_pred CCeEEeCCCCcChhhH-----HHHH-HHHHHhccCC-CCe-eEEEEeCCCcH--HHHHHHHHHhccC-CCCEEEEeCCCC
Confidence 4789999999754311 1111 1122222222 333 55666776443 4456677777653 456678999998
Q ss_pred ccc
Q 003415 246 RLK 248 (822)
Q Consensus 246 ~~~ 248 (822)
...
T Consensus 404 t~~ 406 (484)
T PRK06995 404 AAS 406 (484)
T ss_pred ccc
Confidence 533
No 333
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.49 E-value=0.54 Score=48.35 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=24.5
Q ss_pred CCCC--EEEEEcCCCCchhhHHHHHh--------CCccc
Q 003415 57 LPIP--EIVALGGQSDGKSSLLEALL--------GFRFN 85 (822)
Q Consensus 57 i~lP--qIVVVG~QSsGKSSlLEAL~--------G~~fp 85 (822)
++-. .++++|..++|||++|..|. |..+|
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp 62 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIP 62 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcc
Confidence 4444 39999999999999999999 77777
No 334
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.40 E-value=0.14 Score=57.58 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=44.1
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHH--HHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMV--KSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV--~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK 242 (822)
-.+++||||-|-++.. ....++|. .+.++ |+ -|++|+||+.. |.+...|+.+.-.-.=+=.||||
T Consensus 183 ~fdvIIvDTSGRh~qe--------~sLfeEM~~v~~ai~-Pd-~vi~VmDasiG---Qaae~Qa~aFk~~vdvg~vIlTK 249 (483)
T KOG0780|consen 183 NFDVIIVDTSGRHKQE--------ASLFEEMKQVSKAIK-PD-EIIFVMDASIG---QAAEAQARAFKETVDVGAVILTK 249 (483)
T ss_pred CCcEEEEeCCCchhhh--------HHHHHHHHHHHhhcC-CC-eEEEEEecccc---HhHHHHHHHHHHhhccceEEEEe
Confidence 4789999999976532 23444443 35555 54 46667777643 33445555554333445568999
Q ss_pred CCcccccc
Q 003415 243 FDNRLKEF 250 (822)
Q Consensus 243 ~D~~~~~~ 250 (822)
.|---+++
T Consensus 250 lDGhakGG 257 (483)
T KOG0780|consen 250 LDGHAKGG 257 (483)
T ss_pred cccCCCCC
Confidence 99744443
No 335
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.15 E-value=0.082 Score=44.91 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-.+|.|+.+|||||+|+||.=.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998743
No 336
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=93.11 E-value=0.12 Score=57.31 Aligned_cols=32 Identities=25% Similarity=0.214 Sum_probs=27.4
Q ss_pred CCCCCCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 54 GEKLPIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 54 ~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
|....-+.|-+||-+|+|||+++|||+.-..+
T Consensus 15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~ 46 (391)
T KOG1491|consen 15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKAG 46 (391)
T ss_pred cCCCCcceeeEeeCCCCchHHHHHHHhcCCCC
Confidence 44556678999999999999999999988776
No 337
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.08 E-value=0.6 Score=46.25 Aligned_cols=117 Identities=21% Similarity=0.280 Sum_probs=80.1
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHH
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKS 138 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~ 138 (822)
|=.||.||.-++||+-|+...+.-=||| |.|. | | | .+
T Consensus 7 lfkivlvgnagvgktclvrrftqglfpp-gqga-t--------------------i--------g---vd---------- 43 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPP-GQGA-T--------------------I--------G---VD---------- 43 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCC-CCCc-e--------------------e--------e---ee----------
Confidence 4579999999999999999999888886 3221 1 0 0 00
Q ss_pred HHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEe-cCCccc
Q 003415 139 RTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQ-QSSVEW 217 (822)
Q Consensus 139 a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv-~A~~D~ 217 (822)
|- .-.++|.+ +...|-|-||.|- +..+.+..+|-...+.+||+-- ++...+
T Consensus 44 ------------fm--iktvev~g-ekiklqiwdtagq-------------erfrsitqsyyrsahalilvydiscqpsf 95 (213)
T KOG0095|consen 44 ------------FM--IKTVEVNG-EKIKLQIWDTAGQ-------------ERFRSITQSYYRSAHALILVYDISCQPSF 95 (213)
T ss_pred ------------EE--EEEEEECC-eEEEEEEeeccch-------------HHHHHHHHHHhhhcceEEEEEecccCcch
Confidence 00 00122222 2245778888873 5789999999999999998762 232222
Q ss_pred -chHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 218 -CSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 218 -~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
+--+|++.+.++-...-=+|.|-||.|+-
T Consensus 96 dclpewlreie~yan~kvlkilvgnk~d~~ 125 (213)
T KOG0095|consen 96 DCLPEWLREIEQYANNKVLKILVGNKIDLA 125 (213)
T ss_pred hhhHHHHHHHHHHhhcceEEEeeccccchh
Confidence 33568888888877777788999999984
No 338
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.06 E-value=0.82 Score=52.27 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=44.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcE-EEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRI-LVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sI-ILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D 244 (822)
.+++||||-|-.+ .+...+.+| +.|+...+.| ..+|++|+.. ..+...+...+-.-+-.+ .|+||.|
T Consensus 282 ~d~ILVDTaGrs~--------~D~~~i~el-~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~i~~-~I~TKlD 349 (407)
T COG1419 282 CDVILVDTAGRSQ--------YDKEKIEEL-KELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFPIDG-LIFTKLD 349 (407)
T ss_pred CCEEEEeCCCCCc--------cCHHHHHHH-HHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCCcce-eEEEccc
Confidence 3899999999743 455666665 5666655444 5556677643 345556666665544444 4789999
Q ss_pred cc
Q 003415 245 NR 246 (822)
Q Consensus 245 ~~ 246 (822)
-.
T Consensus 350 ET 351 (407)
T COG1419 350 ET 351 (407)
T ss_pred cc
Confidence 84
No 339
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=93.04 E-value=0.76 Score=52.33 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..|.|.|||++.||||||..-|+..
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHH
Confidence 5789999999999999998777654
No 340
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.71 E-value=0.58 Score=50.61 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=30.6
Q ss_pred hcCCCCcEEEEEecCC-cccchH-HHHHHHHHhCCCCCcEEEEeeC
Q 003415 199 LASPPHRILVFLQQSS-VEWCSS-LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 199 Yik~~~sIILaVv~A~-~D~~nq-~il~lar~~Dp~g~RTIgViTK 242 (822)
..+++. |+|+=.|.+ =|+.+| +++++++++..+...||.++++
T Consensus 153 LaQ~~~-iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlH 197 (258)
T COG1120 153 LAQETP-ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLH 197 (258)
T ss_pred HhcCCC-EEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 334444 777777644 478777 4899999987666788887776
No 341
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.69 E-value=0.079 Score=50.40 Aligned_cols=25 Identities=36% Similarity=0.503 Sum_probs=22.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++|+|..++||||||++|+|..-|
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred EEEEEccCCCccccceeeecccccc
Confidence 5799999999999999999999655
No 342
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=92.69 E-value=1.2 Score=44.35 Aligned_cols=84 Identities=20% Similarity=0.307 Sum_probs=50.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc--ccch-HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV--EWCS-SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~--D~~n-q~il~lar~~Dp~g~RTIgViTK 242 (822)
..|-|-|+.| .+..+.|...|.+.++-+|++- +-++ .+.| ..||+.++.--| --.-|.|-||
T Consensus 57 VkLqIwDtAG-------------qErFrtitstyyrgthgv~vVY-DVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK 121 (198)
T KOG0079|consen 57 VKLQIWDTAG-------------QERFRTITSTYYRGTHGVIVVY-DVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNK 121 (198)
T ss_pred EEEEEeeccc-------------HHHHHHHHHHHccCCceEEEEE-ECcchhhhHhHHHHHHHHHhcCc-cccceecccC
Confidence 4577888877 3678999999999999665553 3222 2223 346766664433 3556778899
Q ss_pred CCccccccccHHHHHHHhhhcC
Q 003415 243 FDNRLKEFSDRWEVDRYLSASG 264 (822)
Q Consensus 243 ~D~~~~~~s~~~~v~~~l~~~G 264 (822)
.|.-...--+..+...|-...|
T Consensus 122 ~d~~~RrvV~t~dAr~~A~~mg 143 (198)
T KOG0079|consen 122 NDDPERRVVDTEDARAFALQMG 143 (198)
T ss_pred CCCccceeeehHHHHHHHHhcC
Confidence 9984332223333344444333
No 343
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.63 E-value=0.1 Score=50.79 Aligned_cols=21 Identities=48% Similarity=0.512 Sum_probs=19.8
Q ss_pred EEEEcCCCCchhhHHHHHhCC
Q 003415 62 IVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 62 IVVVG~QSsGKSSlLEAL~G~ 82 (822)
|+++|..+||||||++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999986
No 344
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=92.61 E-value=0.5 Score=54.17 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=42.3
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCcEEEEeeCCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~RTIgViTK~D 244 (822)
.++|||.||. .+.|.+|+... .-- ...|+|++++..+..|. -+.+++-++ -++-|.|+||.|
T Consensus 51 ~~~fIDvpgh------------~~~i~~miag~-~~~-d~alLvV~~deGl~~qtgEhL~iLdllg--i~~giivltk~D 114 (447)
T COG3276 51 VMGFIDVPGH------------PDFISNLLAGL-GGI-DYALLVVAADEGLMAQTGEHLLILDLLG--IKNGIIVLTKAD 114 (447)
T ss_pred ceEEeeCCCc------------HHHHHHHHhhh-cCC-ceEEEEEeCccCcchhhHHHHHHHHhcC--CCceEEEEeccc
Confidence 6999999996 34677777541 111 24566777775555553 344444332 356699999999
Q ss_pred cccc
Q 003415 245 NRLK 248 (822)
Q Consensus 245 ~~~~ 248 (822)
...+
T Consensus 115 ~~d~ 118 (447)
T COG3276 115 RVDE 118 (447)
T ss_pred cccH
Confidence 9644
No 345
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.50 E-value=0.11 Score=51.98 Aligned_cols=22 Identities=45% Similarity=0.465 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+|+|..+|||||+++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 3799999999999999999995
No 346
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=92.47 E-value=0.32 Score=56.00 Aligned_cols=75 Identities=24% Similarity=0.297 Sum_probs=48.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~RTIgViTK~ 243 (822)
..+.||||||--.- +| .++.|-+|| +. +|++++|....--|. +++-|- ..|-+-|.|+||.
T Consensus 68 ~~INIvDTPGHADF--GG----EVERvl~MV-------Dg-vlLlVDA~EGpMPQTrFVlkKAl---~~gL~PIVVvNKi 130 (603)
T COG1217 68 TRINIVDTPGHADF--GG----EVERVLSMV-------DG-VLLLVDASEGPMPQTRFVLKKAL---ALGLKPIVVINKI 130 (603)
T ss_pred eEEEEecCCCcCCc--cc----hhhhhhhhc-------ce-EEEEEEcccCCCCchhhhHHHHH---HcCCCcEEEEeCC
Confidence 56789999995332 22 345677777 33 455566665555554 343333 3488999999999
Q ss_pred CccccccccHHHHHHH
Q 003415 244 DNRLKEFSDRWEVDRY 259 (822)
Q Consensus 244 D~~~~~~s~~~~v~~~ 259 (822)
|+ +.....|.++..
T Consensus 131 Dr--p~Arp~~Vvd~v 144 (603)
T COG1217 131 DR--PDARPDEVVDEV 144 (603)
T ss_pred CC--CCCCHHHHHHHH
Confidence 98 555567776643
No 347
>PRK13695 putative NTPase; Provisional
Probab=92.44 E-value=0.84 Score=45.73 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.|+++|..++|||+|+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 348
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.37 E-value=1.3 Score=45.46 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=22.1
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++|+|..++|||++|.+|.+..+.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~~~~ 55 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLAVLL 55 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHH
Confidence 6899999999999999999965553
No 349
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=92.24 E-value=0.71 Score=46.42 Aligned_cols=134 Identities=22% Similarity=0.221 Sum_probs=75.1
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIK 137 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~ 137 (822)
-.-.|.+||+.++||||||-..+--.|-+- .|+.|-
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~-------~~~tIG------------------------------------- 45 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDL-------HPTTIG------------------------------------- 45 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCcc-------CCceee-------------------------------------
Confidence 345899999999999999988877666421 111111
Q ss_pred HHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEec-CCcc
Q 003415 138 SRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQ-SSVE 216 (822)
Q Consensus 138 ~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~-A~~D 216 (822)
+.-++-++.|.+. ...|.|-||.|- +..+.|.-+|-+...-|||+--- ....
T Consensus 46 -------------vDFkvk~m~vdg~-~~KlaiWDTAGq-------------ErFRtLTpSyyRgaqGiIlVYDVT~Rdt 98 (209)
T KOG0080|consen 46 -------------VDFKVKVMQVDGK-RLKLAIWDTAGQ-------------ERFRTLTPSYYRGAQGIILVYDVTSRDT 98 (209)
T ss_pred -------------eeEEEEEEEEcCc-eEEEEEEeccch-------------HhhhccCHhHhccCceeEEEEEccchhh
Confidence 1111123334332 346889999883 46788889999988878776521 1122
Q ss_pred cchHHHHHHHHHhCCCC----CcEEEEeeCCCccccccccHHHHHHHhhhcC
Q 003415 217 WCSSLWLDAIREIDPTF----RRTVIVVSKFDNRLKEFSDRWEVDRYLSASG 264 (822)
Q Consensus 217 ~~nq~il~lar~~Dp~g----~RTIgViTK~D~~~~~~s~~~~v~~~l~~~G 264 (822)
+.+-+ ..++++|-.- -=.+.|-||.|+-....-+..+.-+|-..++
T Consensus 99 f~kLd--~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~ 148 (209)
T KOG0080|consen 99 FVKLD--IWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHR 148 (209)
T ss_pred HHhHH--HHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhC
Confidence 23322 1334444321 2235688999972111112223334555554
No 350
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=92.21 E-value=0.21 Score=55.23 Aligned_cols=34 Identities=29% Similarity=0.370 Sum_probs=31.1
Q ss_pred CCCCCCEEEEEcCCCCchhhHHHHHhCCcccccc
Q 003415 55 EKLPIPEIVALGGQSDGKSSLLEALLGFRFNVRE 88 (822)
Q Consensus 55 ~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~ 88 (822)
...+.|.|.|||-.|+||||||++|++-.+.|++
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~d 207 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPND 207 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccc
Confidence 5689999999999999999999999998887776
No 351
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=2.2 Score=50.71 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=23.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+++||..++||||+++.|+|+-=|
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~~~ 373 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFLAP 373 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCC
Confidence 7999999999999999999999655
No 352
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=91.79 E-value=0.34 Score=47.98 Aligned_cols=67 Identities=15% Similarity=0.079 Sum_probs=42.4
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc---cchHHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE---WCSSLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D---~~nq~il~lar~~Dp~g~RTIgViTK 242 (822)
....+-|+||-- ..+.|=+.|-..-+.|+.+|-.|..| .+.++...+.-+---.|.+.+..-||
T Consensus 65 vtiklwD~gGq~-------------rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK 131 (186)
T KOG0075|consen 65 VTIKLWDLGGQP-------------RFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNK 131 (186)
T ss_pred eEEEEEecCCCc-------------cHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEeccc
Confidence 445678999942 35778888988887555555444322 23344445554443457777888899
Q ss_pred CCc
Q 003415 243 FDN 245 (822)
Q Consensus 243 ~D~ 245 (822)
.|+
T Consensus 132 ~d~ 134 (186)
T KOG0075|consen 132 IDL 134 (186)
T ss_pred ccC
Confidence 998
No 353
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.67 E-value=0.13 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCchhhHHHHHhCC
Q 003415 60 PEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
|.|.|||..+||||||++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999865
No 354
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=91.53 E-value=1.8 Score=43.25 Aligned_cols=69 Identities=16% Similarity=0.072 Sum_probs=43.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH-HHHHHHHhCCC---CC-cEEEEe
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL-WLDAIREIDPT---FR-RTVIVV 240 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~-il~lar~~Dp~---g~-RTIgVi 240 (822)
-.|.|.||-|+-..+ .+|=+.|.+-++..+|+-.++ |..+-. +--+-+++|.. .+ ..+..-
T Consensus 60 E~l~lyDTaGlq~~~------------~eLprhy~q~aDafVLVYs~~--d~eSf~rv~llKk~Idk~KdKKEvpiVVLa 125 (198)
T KOG3883|consen 60 EQLRLYDTAGLQGGQ------------QELPRHYFQFADAFVLVYSPM--DPESFQRVELLKKEIDKHKDKKEVPIVVLA 125 (198)
T ss_pred heEEEeecccccCch------------hhhhHhHhccCceEEEEecCC--CHHHHHHHHHHHHHHhhccccccccEEEEe
Confidence 578999999994321 235578999999888877554 343332 33344556543 23 344455
Q ss_pred eCCCcccc
Q 003415 241 SKFDNRLK 248 (822)
Q Consensus 241 TK~D~~~~ 248 (822)
||.|+..+
T Consensus 126 N~rdr~~p 133 (198)
T KOG3883|consen 126 NKRDRAEP 133 (198)
T ss_pred chhhcccc
Confidence 79998533
No 355
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.44 E-value=0.15 Score=54.44 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=24.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVRE 88 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r~ 88 (822)
-+.+||..++||||||+.|.|..-|..|
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~~G 58 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPTSG 58 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3789999999999999999999888443
No 356
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.11 E-value=0.14 Score=50.68 Aligned_cols=23 Identities=48% Similarity=0.661 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
.|||+|..|+|||||+++|....
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~g 23 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAARG 23 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHcC
Confidence 48999999999999999999663
No 357
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=91.07 E-value=0.28 Score=52.68 Aligned_cols=30 Identities=30% Similarity=0.270 Sum_probs=24.4
Q ss_pred CCCCCEEE-----EEcCCCCchhhHHHHHhCCccc
Q 003415 56 KLPIPEIV-----ALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 56 ~i~lPqIV-----VVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++.-+++ +||=+|+|||+++.-|+|.+-+
T Consensus 51 gfDV~ktg~a~vg~vgFPSvGksTl~~~l~g~~s~ 85 (358)
T KOG1487|consen 51 GFDVAKTGDARVGFVGFPSVGKSTLLSKLTGTFSE 85 (358)
T ss_pred CccceeecceeeeEEecCccchhhhhhhhcCCCCc
Confidence 45665554 5999999999999999998755
No 358
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.90 E-value=0.18 Score=51.57 Aligned_cols=35 Identities=40% Similarity=0.476 Sum_probs=26.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc--ccccccccccccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR--FNVREVEMGTRRP 96 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~--fp~r~~g~cTR~P 96 (822)
-|+++|..+||||||+..|.+.- |. ......||.|
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~-~~~~~~tr~p 43 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQ-LSVSATTRAP 43 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccce-eccCccccCC
Confidence 58999999999999999999862 21 2223456766
No 359
>PTZ00099 rab6; Provisional
Probab=90.82 E-value=0.69 Score=46.78 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=42.9
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc--cch-HHHHHHHHHhCCCCCcEEEEee
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE--WCS-SLWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D--~~n-q~il~lar~~Dp~g~RTIgViT 241 (822)
...+.|.||||.. ..+.+...|++..+ ++|+|.+.+.. +.. ..|+..+..........|.|.|
T Consensus 28 ~v~l~iwDt~G~e-------------~~~~~~~~~~~~ad-~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgN 93 (176)
T PTZ00099 28 PVRLQLWDTAGQE-------------RFRSLIPSYIRDSA-AAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGN 93 (176)
T ss_pred EEEEEEEECCChH-------------HhhhccHHHhCCCc-EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 3578999999963 23456778898877 55555555532 222 1344444433333466789999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 94 K~DL~ 98 (176)
T PTZ00099 94 KTDLG 98 (176)
T ss_pred Ccccc
Confidence 99984
No 360
>KOG2484 consensus GTPase [General function prediction only]
Probab=90.62 E-value=0.26 Score=55.78 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=24.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVRE 88 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r~ 88 (822)
.+-|||=+++|||||||+|...+..++|
T Consensus 254 rvGViG~PNVGKSSvINsL~~~k~C~vg 281 (435)
T KOG2484|consen 254 RVGIIGYPNVGKSSVINSLKRRKACNVG 281 (435)
T ss_pred EeeeecCCCCChhHHHHHHHHhccccCC
Confidence 6789999999999999999988765454
No 361
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=90.46 E-value=0.22 Score=50.50 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||++|+|..-|
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~~~ 44 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLLRP 44 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998645
No 362
>COG3910 Predicted ATPase [General function prediction only]
Probab=90.45 E-value=0.23 Score=51.34 Aligned_cols=46 Identities=30% Similarity=0.481 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHh-CCcccccc
Q 003415 38 SRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALL-GFRFNVRE 88 (822)
Q Consensus 38 ~Lld~id~Lr~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~-G~~fp~r~ 88 (822)
--+.++.-|+. - -.+..|--+++|..++|||+|||||. |..|.+-|
T Consensus 21 ~slPa~r~l~~-~----LeF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aG 67 (233)
T COG3910 21 FSLPAFRHLEE-R----LEFRAPITFITGENGSGKSTLLEAIAAGMGFNAAG 67 (233)
T ss_pred ccchHHHhhhh-h----ccccCceEEEEcCCCccHHHHHHHHHhhccccccC
Confidence 33556666774 1 25688999999999999999999996 45777554
No 363
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=90.45 E-value=2 Score=46.02 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=24.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVR 87 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r 87 (822)
.+.+||+.+||||||..+|+|..=|-.
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~~p~~ 61 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLEKPSS 61 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCC
Confidence 578999999999999999999977633
No 364
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.43 E-value=0.23 Score=49.44 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..++||||||+.|+|..-|
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5679999999999999999999655
No 365
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.39 E-value=0.23 Score=50.78 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=22.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..++|||+|+++|+|..-|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIMQP 52 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999998655
No 366
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=90.38 E-value=0.23 Score=48.50 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.5
Q ss_pred EEEEcCCCCchhhHHHHHhCCccc
Q 003415 62 IVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 62 IVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
++|+|..++|||+|+++|+|..-|
T Consensus 29 ~~i~G~nGsGKStLl~~l~G~~~~ 52 (144)
T cd03221 29 IGLVGRNGAGKSTLLKLIAGELEP 52 (144)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCC
Confidence 469999999999999999998655
No 367
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=90.36 E-value=0.21 Score=53.20 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=24.1
Q ss_pred CCCCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 56 KLPIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 56 ~i~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.++.+-.++||+.+||||++|+||.+.
T Consensus 22 ~~~~~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 22 GFDPQFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 456778999999999999999999976
No 368
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=90.32 E-value=0.23 Score=51.51 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|..-|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 52 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLPP 52 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998655
No 369
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=90.31 E-value=0.23 Score=51.21 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||.+|+|..-|
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~~ 54 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALTP 54 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998655
No 370
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=90.27 E-value=0.25 Score=49.48 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCCCchhhHHHHHh---CCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALL---GFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~---G~~fp 85 (822)
+.|-|+|+|..+|||||+.+.|. |...+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 46889999999999999999999 76654
No 371
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.13 E-value=0.24 Score=50.73 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..++||||||+.|+|..-|
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~~~ 53 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLLNP 53 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999998655
No 372
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.03 E-value=0.25 Score=50.86 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=23.8
Q ss_pred CCCCE-EEEEcCCCCchhhHHHHHhCCccc
Q 003415 57 LPIPE-IVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 57 i~lPq-IVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
+.-.+ ++++|..+|||||||..|+|.--|
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIILP 52 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444 579999999999999999998544
No 373
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=90.02 E-value=0.25 Score=51.18 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRP 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998545
No 374
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=89.99 E-value=0.24 Score=52.24 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.9
Q ss_pred EEEEcCCCCchhhHHHHHhCCcccc
Q 003415 62 IVALGGQSDGKSSLLEALLGFRFNV 86 (822)
Q Consensus 62 IVVVG~QSsGKSSlLEAL~G~~fp~ 86 (822)
|+|+|..+||||+++++|+|--.|.
T Consensus 35 vtViGsNGAGKSTlln~iaG~l~~t 59 (263)
T COG1101 35 VTVIGSNGAGKSTLLNAIAGDLKPT 59 (263)
T ss_pred EEEEcCCCccHHHHHHHhhCccccC
Confidence 8899999999999999999987663
No 375
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=89.95 E-value=0.25 Score=51.06 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=22.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEKP 55 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998555
No 376
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=89.92 E-value=0.26 Score=51.34 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|..-|
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~~~ 39 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLDAP 39 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCccC
Confidence 3569999999999999999999655
No 377
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.89 E-value=0.26 Score=50.26 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.8
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Confidence 5789999999999999999998655
No 378
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=89.86 E-value=0.26 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 57 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLEP 57 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3679999999999999999998655
No 379
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.85 E-value=0.26 Score=51.17 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||..|+|..-|
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLERP 56 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998655
No 380
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=89.76 E-value=0.18 Score=62.28 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=40.2
Q ss_pred HHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHhhccCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003415 491 IARAAARSWFAPLLDTAC--DRLAFVLGNLFDIALERHCNQDSEYGNKTGNMDGYVSFHASLRQAYNRFVKDLSKQCKQ 567 (822)
Q Consensus 491 LfreQS~~W~~pla~~h~--~rv~~i~~rfv~~al~~i~~~d~~~~~~~~~l~~~~~~~~~L~~~~~~fv~ele~~ck~ 567 (822)
-|+.+|..-....++.+. .+|...++.=|+..+.|=. +.. .+.|.+ ...+..+|..+-++..+++--
T Consensus 492 ~lr~~aw~~l~~ki~e~~~~~~ll~~LkdRFe~~FryDe--~g~----PRvW~~----eddI~~if~~ARe~AL~LL~v 560 (742)
T PF05879_consen 492 KLRRKAWSVLREKIREEASEDNLLIRLKDRFEDKFRYDE--DGV----PRVWKP----EDDIDAIFRKAREHALKLLPV 560 (742)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhCcCC--CCC----CCCCCC----HhHHHHHHHHHHHHHHHHHHH
Confidence 355566444445666666 6666666666666554432 111 356765 456777888887777766554
No 381
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=89.75 E-value=0.27 Score=50.30 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..++||||||+.|+|.--|
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLEKF 50 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999998655
No 382
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=89.73 E-value=0.27 Score=50.47 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~p 52 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIKE 52 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999998655
No 383
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=89.71 E-value=0.28 Score=50.51 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+|||||||+.|+|.--|
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~ 53 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLGP 53 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999998544
No 384
>PRK14738 gmk guanylate kinase; Provisional
Probab=89.66 E-value=0.4 Score=49.79 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|||+|.+++|||||+++|...
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhc
Confidence 4668899999999999999854
No 385
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.64 E-value=0.28 Score=51.54 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||++|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~p 52 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLRP 52 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998545
No 386
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=89.60 E-value=0.28 Score=51.68 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||.+|+|.--|
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~ 54 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVEP 54 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 5789999999999999999998544
No 387
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=89.59 E-value=0.28 Score=50.76 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||.+|+|.--|
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~~ 56 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcCC
Confidence 5789999999999999999998544
No 388
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=89.59 E-value=0.28 Score=50.39 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
-++++|..++||||||+.|+|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999984
No 389
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=89.54 E-value=0.28 Score=51.70 Aligned_cols=25 Identities=40% Similarity=0.489 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..++||||||+.|+|..-|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLEMP 54 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998655
No 390
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=89.47 E-value=0.29 Score=51.41 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~~ 61 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLDTP 61 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4689999999999999999998544
No 391
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=89.43 E-value=0.3 Score=49.89 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|+.++|||+|++.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLLRP 52 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998655
No 392
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=89.40 E-value=0.3 Score=50.66 Aligned_cols=25 Identities=40% Similarity=0.375 Sum_probs=23.1
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..++||||||++|+|..-|
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~~~ 53 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEMQT 53 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 6899999999999999999999755
No 393
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=89.40 E-value=0.3 Score=51.04 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+|||||||+.|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~p 52 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVKP 52 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998544
No 394
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=89.40 E-value=0.3 Score=50.33 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.1
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||..|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEELP 53 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4679999999999999999998544
No 395
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.39 E-value=0.3 Score=51.32 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||++|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 53 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLVEP 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 5789999999999999999998655
No 396
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=89.38 E-value=0.31 Score=49.29 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..++||||||+.|+|..-|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLRPP 52 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6799999999999999999999655
No 397
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=89.30 E-value=0.3 Score=51.33 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
-++++|..+|||||||++|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999984
No 398
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=89.27 E-value=0.93 Score=51.38 Aligned_cols=48 Identities=13% Similarity=0.118 Sum_probs=30.3
Q ss_pred cchhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHhCCcc
Q 003415 33 ASTRASRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 33 s~~~~~Lld~id~Lr~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
|-+-..|+.++..+-.+-. +=.--.+-+||-+|+||||+||.|-...+
T Consensus 285 sfGKgalI~llRQf~kLh~----dkkqISVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 285 SFGKGALIQLLRQFAKLHS----DKKQISVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred ccchhHHHHHHHHHHhhcc----CccceeeeeecCCCCchHHHHHHHhhccc
Confidence 3455666655544444321 11222456799999999999999965544
No 399
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.25 E-value=0.31 Score=50.29 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+|||||||..|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~p 52 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLERP 52 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4779999999999999999998544
No 400
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=89.24 E-value=0.31 Score=50.49 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||..|+|.--|
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~~ 57 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDNP 57 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5779999999999999999998655
No 401
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.23 E-value=0.29 Score=50.90 Aligned_cols=28 Identities=36% Similarity=0.521 Sum_probs=25.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVRE 88 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r~ 88 (822)
-+||+|..++||||+||-+.|+--|.+|
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~~G 60 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPSRG 60 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccc
Confidence 5899999999999999999999888665
No 402
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=89.14 E-value=0.32 Score=50.08 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=22.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++|+|..++|||+||++|+|..-|
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 60 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFLEA 60 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 5789999999999999999998655
No 403
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.14 E-value=0.33 Score=48.62 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..++|||+|+..|+|..-|
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~ 52 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKP 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998544
No 404
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.07 E-value=0.33 Score=50.47 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=21.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~ 52 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLLKP 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3679999999999999999998544
No 405
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=88.99 E-value=0.33 Score=50.42 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.8
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||..|+|.--|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~~ 57 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLLKP 57 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999998545
No 406
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=88.98 E-value=0.32 Score=51.17 Aligned_cols=31 Identities=35% Similarity=0.344 Sum_probs=25.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccccccccccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVREVEMGT 93 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cT 93 (822)
-++|+|+.++|||+||.+|+|.--| ++|-||
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~p--~~G~v~ 59 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELSP--DSGEVT 59 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccCC--CCCeEe
Confidence 4789999999999999999998766 335554
No 407
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=88.96 E-value=0.44 Score=47.20 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=18.2
Q ss_pred CCCCCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 55 EKLPIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 55 ~~i~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..-+.+-++|+|..++|||+||+++...
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3445688999999999999999998754
No 408
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=88.96 E-value=0.63 Score=49.20 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=24.3
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCcccccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFNVRE 88 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp~r~ 88 (822)
.-+++.|..++|||++|..|.+..+.+..
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~ 60 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQI 60 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence 35799999999999999999997666443
No 409
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.95 E-value=0.28 Score=49.90 Aligned_cols=23 Identities=48% Similarity=0.798 Sum_probs=21.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
-++|+|..+|||||++++|+|.-
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999999974
No 410
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.90 E-value=0.34 Score=49.90 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+|||||||++|+|.--|
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 51 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPP 51 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCC
Confidence 7899999999999999999998433
No 411
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=88.90 E-value=0.35 Score=49.81 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+|||||||.+|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLEEP 52 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998544
No 412
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.87 E-value=0.34 Score=50.49 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++|+|..++||||||++|+|.--|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFYDP 55 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCC
Confidence 4789999999999999999998544
No 413
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=88.83 E-value=0.34 Score=49.97 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~~p 51 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLLKP 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC
Confidence 5789999999999999999998555
No 414
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=88.79 E-value=0.35 Score=50.63 Aligned_cols=25 Identities=24% Similarity=0.200 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++|+|..+|||||||+.|+|..-|
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~~ 59 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLISP 59 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 5789999999999999999998544
No 415
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.77 E-value=0.34 Score=50.73 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++|+|..+|||||||++|+|..-|
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~~~ 53 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFYDV 53 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 5689999999999999999998655
No 416
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=88.75 E-value=1.9 Score=47.46 Aligned_cols=132 Identities=15% Similarity=0.164 Sum_probs=77.4
Q ss_pred CCCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHH
Q 003415 56 KLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADI 135 (822)
Q Consensus 56 ~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~ 135 (822)
.-+.--|..||+-.-||++|--||++.=.- ++.+-.. +++ .
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~-~~~~~~~----------------------------------~y~----~ 49 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAK-KGGAEAK----------------------------------AYD----Q 49 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHh-hcccccc----------------------------------chh----h
Confidence 334457899999999999999999976321 2111101 111 1
Q ss_pred HHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc
Q 003415 136 IKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV 215 (822)
Q Consensus 136 I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~ 215 (822)
|+.+-++- ..+++=+.-.++.+.. --+...||-||- .+-|++|+....+-.. -||+|. |.+
T Consensus 50 id~aPeEk----~rGITIntahveyet~-~rhyahVDcPGH------------aDYvKNMItgAaqmDg-AILVVs-A~d 110 (394)
T COG0050 50 IDNAPEEK----ARGITINTAHVEYETA-NRHYAHVDCPGH------------ADYVKNMITGAAQMDG-AILVVA-ATD 110 (394)
T ss_pred hccCchHh----hcCceeccceeEEecC-CceEEeccCCCh------------HHHHHHHhhhHHhcCc-cEEEEE-cCC
Confidence 11111110 0133333344555443 347889999994 2468899987776665 445444 333
Q ss_pred ccchHH--HHHHHHHhCCCCCcEEEEeeCCCccc
Q 003415 216 EWCSSL--WLDAIREIDPTFRRTVIVVSKFDNRL 247 (822)
Q Consensus 216 D~~nq~--il~lar~~Dp~g~RTIgViTK~D~~~ 247 (822)
...-|. -+-+++++. -.+.|.++||+|++.
T Consensus 111 GpmPqTrEHiLlarqvG--vp~ivvflnK~Dmvd 142 (394)
T COG0050 111 GPMPQTREHILLARQVG--VPYIVVFLNKVDMVD 142 (394)
T ss_pred CCCCcchhhhhhhhhcC--CcEEEEEEecccccC
Confidence 444333 344778773 247888999999975
No 417
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=88.69 E-value=0.32 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
-++++|..+|||||||++|+|.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999986
No 418
>COG1162 Predicted GTPases [General function prediction only]
Probab=88.65 E-value=0.27 Score=54.11 Aligned_cols=21 Identities=48% Similarity=0.575 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
..|++|..++|||||||+|.+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCc
Confidence 679999999999999999998
No 419
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=88.65 E-value=0.36 Score=48.35 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..++||||||..|+|.--|
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~ 54 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRP 54 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCC
Confidence 5789999999999999999998544
No 420
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=88.61 E-value=0.36 Score=50.75 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+||||||+..|+|..-|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p 53 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLYVA 53 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4679999999999999999998655
No 421
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=88.57 E-value=0.37 Score=49.55 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++|+|..++||||||+.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 52 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLIKP 52 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4679999999999999999998544
No 422
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=88.56 E-value=0.35 Score=54.25 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=23.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-+|++|+.+|||||+|+.|.|..=|
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~ 55 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEP 55 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3899999999999999999999776
No 423
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=88.55 E-value=0.42 Score=49.57 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHh----CCccc
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALL----GFRFN 85 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~----G~~fp 85 (822)
++.+-++++|+.++||||||+||. |..+|
T Consensus 20 ~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~ 52 (204)
T cd03240 20 FFSPLTLIVGQNGAGKTTIIEALKYALTGELPP 52 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCc
Confidence 455688999999999999999994 88765
No 424
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=88.52 E-value=0.38 Score=49.66 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..++||||||+.|+|..-|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLLPP 54 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5679999999999999999998655
No 425
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=88.51 E-value=0.35 Score=49.09 Aligned_cols=23 Identities=39% Similarity=0.395 Sum_probs=20.8
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
-|+++|..+||||||+..|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 37899999999999999998864
No 426
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.47 E-value=0.38 Score=49.14 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=21.1
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
-++++|..++||||||..|+|..
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 56899999999999999999974
No 427
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=88.43 E-value=0.14 Score=51.72 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=0.0
Q ss_pred EEEcCCCCchhhHHHHHhCC
Q 003415 63 VALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 63 VVVG~QSsGKSSlLEAL~G~ 82 (822)
|+||..+||||++|+||...
T Consensus 3 viiG~N~sGKS~il~ai~~~ 22 (303)
T PF13304_consen 3 VIIGPNGSGKSNILEAIYFL 22 (303)
T ss_dssp --------------------
T ss_pred cccccccccccccccccccc
Confidence 78999999999999999865
No 428
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=88.41 E-value=0.38 Score=50.19 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=22.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..++||||||..|+|.--|
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~~p 62 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDDG 62 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 6899999999999999999998544
No 429
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=88.41 E-value=0.38 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=22.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+.|+|..+|||||||+.|+|..=|
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 6899999999999999999999545
No 430
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.38 E-value=0.4 Score=48.28 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=21.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+.++|+.++||||||.+|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEEP 52 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4669999999999999999998543
No 431
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=88.37 E-value=0.4 Score=48.23 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++|+|..++||||||++|+|.--|
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~ 54 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKP 54 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 4679999999999999999998644
No 432
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.36 E-value=0.39 Score=49.64 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.0
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
--++|+|..++||||||+.|+|.--|
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~~ 49 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKP 49 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46789999999999999999998544
No 433
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=88.34 E-value=0.4 Score=49.34 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=22.8
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+||||||++.|+|.--|
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~p 53 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLARP 53 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6789999999999999999998655
No 434
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=88.33 E-value=0.4 Score=49.24 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+.++|..++||||||+.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLSPP 52 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998644
No 435
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=88.31 E-value=0.38 Score=50.38 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+|||||||.+|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~~ 52 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFLRP 52 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC
Confidence 5789999999999999999998544
No 436
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.29 E-value=0.37 Score=52.09 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+|||||||+.|+|.--|
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~~p 59 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLHVP 59 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999998655
No 437
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=88.28 E-value=0.39 Score=49.96 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..++||||||+.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGILRP 52 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5689999999999999999998544
No 438
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.27 E-value=0.34 Score=49.96 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=22.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
-++++|..+|||||||+.|+|..-
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCC
Confidence 678999999999999999999854
No 439
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=88.26 E-value=0.4 Score=50.11 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.8
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+|||||||.+|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLPV 52 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5899999999999999999998655
No 440
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=88.24 E-value=0.35 Score=46.17 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=18.7
Q ss_pred EEEEcCCCCchhhHHHHHhC
Q 003415 62 IVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 62 IVVVG~QSsGKSSlLEAL~G 81 (822)
|+++|.++|||||+.+.|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999984
No 441
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.21 E-value=0.42 Score=46.91 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=22.9
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..++++|..++|||+++++|+|.--|
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~ 51 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP 51 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 36789999999999999999998544
No 442
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=88.20 E-value=0.4 Score=49.70 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++|+|..++|||||+..|+|..-|
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~~~ 56 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLVEL 56 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5789999999999999999998655
No 443
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.16 E-value=0.41 Score=50.13 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+|||||||.+|+|.--|
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998544
No 444
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=88.14 E-value=4 Score=41.42 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=43.6
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHh----CCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREI----DPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~----Dp~g~RTIgViT 241 (822)
..|+|-|.-|= ..+++.=+.|.+..+.+|-+|-+ ++...-++..+..+++ --.|...+.+.|
T Consensus 60 ~~L~iwDvGGq-------------~~lr~~W~nYfestdglIwvvDs-sD~~r~~e~~~~L~~lL~eerlaG~~~Lvlan 125 (185)
T KOG0073|consen 60 YTLNIWDVGGQ-------------KTLRSYWKNYFESTDGLIWVVDS-SDRMRMQECKQELTELLVEERLAGAPLLVLAN 125 (185)
T ss_pred eEEEEEEcCCc-------------chhHHHHHHhhhccCeEEEEEEC-chHHHHHHHHHHHHHHHhhhhhcCCceEEEEe
Confidence 56888887762 24566778899999977766644 4455445444433332 223678888999
Q ss_pred CCCc
Q 003415 242 KFDN 245 (822)
Q Consensus 242 K~D~ 245 (822)
|-|.
T Consensus 126 k~dl 129 (185)
T KOG0073|consen 126 KQDL 129 (185)
T ss_pred cCcC
Confidence 9998
No 445
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=88.11 E-value=2.7 Score=51.00 Aligned_cols=133 Identities=23% Similarity=0.318 Sum_probs=79.9
Q ss_pred CCCCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHH
Q 003415 55 EKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIAD 134 (822)
Q Consensus 55 ~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~ 134 (822)
+.+.-|-++|.|+--+||+-||..|-|-.+---..|..|-- .|....+. +
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqq--------------------------IgAt~fp~----~ 520 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQ--------------------------IGATYFPA----E 520 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccccccccccceeee--------------------------ccccccch----H
Confidence 47899999999999999999999999865431111222210 01111111 3
Q ss_pred HHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCC
Q 003415 135 IIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSS 214 (822)
Q Consensus 135 ~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~ 214 (822)
.|++.+..+ ...++. .+ .+|-|.+|||||--. .-+| ++.-..--.|+++|++-.
T Consensus 521 ni~e~tk~~-~~~~K~------~~-----kvPg~lvIdtpghEs-------------Ftnl-RsrgsslC~~aIlvvdIm 574 (1064)
T KOG1144|consen 521 NIREKTKEL-KKDAKK------RL-----KVPGLLVIDTPGHES-------------FTNL-RSRGSSLCDLAILVVDIM 574 (1064)
T ss_pred HHHHHHHHH-Hhhhhh------hc-----CCCeeEEecCCCchh-------------hhhh-hhccccccceEEEEeehh
Confidence 355555433 222211 01 358899999999421 1222 223333344777777766
Q ss_pred cccchHH--HHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 215 VEWCSSL--WLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 215 ~D~~nq~--il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
..+..|. .+.+.|. .....|+.+||+|.+
T Consensus 575 hGlepqtiESi~lLR~---rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 575 HGLEPQTIESINLLRM---RKTPFIVALNKIDRL 605 (1064)
T ss_pred ccCCcchhHHHHHHHh---cCCCeEEeehhhhhh
Confidence 6666665 4667764 357889999999985
No 446
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=88.10 E-value=0.42 Score=49.29 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||..|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEEP 52 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999998544
No 447
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=88.06 E-value=0.44 Score=47.62 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++|+|..+||||||++.|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPW 53 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5799999999999999999998544
No 448
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=88.05 E-value=0.42 Score=49.01 Aligned_cols=25 Identities=44% Similarity=0.481 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++|+|..++||||||+.|+|..-|
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~~~~ 57 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCC
Confidence 5789999999999999999998655
No 449
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=88.03 E-value=0.42 Score=50.20 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+||||||+.+|+|.--|
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~~p 37 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLAQP 37 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5799999999999999999998644
No 450
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=87.98 E-value=0.43 Score=49.65 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..++||||||+.|+|.--|
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G~~~~ 60 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYANYLP 60 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998544
No 451
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.94 E-value=0.45 Score=47.62 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.8
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..++|||||+..|+|.--|
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~~ 54 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 6899999999999999999998544
No 452
>PRK10908 cell division protein FtsE; Provisional
Probab=87.92 E-value=0.43 Score=49.63 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+||||||+..|+|.--|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIERP 54 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999998655
No 453
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=87.91 E-value=2.5 Score=47.66 Aligned_cols=160 Identities=21% Similarity=0.264 Sum_probs=83.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccccccccc----ccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVREVEM----GTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~----cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
.++|+|.--+|||+||--|+.-.+- .|.|- .=|+|-||+--++.. +....-.-...+ .+.+..+- +
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQgeLD-nG~GrARln~FRh~HEiqsGrTSs-----is~evlGFd~~g-~vVNY~~~---~ 238 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGELD-NGNGRARLNIFRHPHEIQSGRTSS-----ISNEVLGFDNRG-KVVNYAQN---M 238 (591)
T ss_pred EEEEecCcccCcceeeeeeeccccc-CCCCeeeeehhcchhhhccCcccc-----cchhcccccccc-cccchhhc---c
Confidence 5899999999999999999877664 23221 235555554322211 111000000001 11111110 0
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc-
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV- 215 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~- 215 (822)
. .|++..+ | -.-.|||||.|-..-.. ..|..| ..| -|++-.| |++|+.
T Consensus 239 t--aEEi~e~-----S------------SKlvTfiDLAGh~kY~~--------TTi~gL-tgY--~Ph~A~L-vVsA~~G 287 (591)
T KOG1143|consen 239 T--AEEIVEK-----S------------SKLVTFIDLAGHAKYQK--------TTIHGL-TGY--TPHFACL-VVSADRG 287 (591)
T ss_pred c--HHHHHhh-----h------------cceEEEeecccchhhhe--------eeeeec-ccC--CCceEEE-EEEcCCC
Confidence 0 0111111 1 13579999999643211 112222 233 2564444 445553
Q ss_pred -ccchHHHHHHHHHhCCCCCcEEEEeeCCCccccccccHH--HHHHHhhhcC
Q 003415 216 -EWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRW--EVDRYLSASG 264 (822)
Q Consensus 216 -D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~~~~s~~~--~v~~~l~~~G 264 (822)
.|.+.+-+-++..+| -+...++||.|++.+++-+.. ++.+.+...|
T Consensus 288 i~~tTrEHLgl~~AL~---iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~G 336 (591)
T KOG1143|consen 288 ITWTTREHLGLIAALN---IPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAG 336 (591)
T ss_pred CccccHHHHHHHHHhC---CCeEEEEEeeccccchhHHHHHHHHHHHHhhcC
Confidence 466677788888775 678899999999877665432 2334554445
No 454
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=87.84 E-value=0.42 Score=50.20 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-+.++|..+|||||||++|+|.--|
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~~~ 55 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFYDP 55 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCC
Confidence 5799999999999999999998544
No 455
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.81 E-value=0.43 Score=50.27 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||..|+|.--|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLERP 54 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999998545
No 456
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=87.81 E-value=2.9 Score=49.90 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+++||..+|||||+++.|.|.-=|
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 4668999999999999999998544
No 457
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=87.75 E-value=0.47 Score=47.89 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..++|||||++.|+|.--|
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~ 51 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKP 51 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998544
No 458
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=87.74 E-value=0.44 Score=50.88 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||..|+|.--|
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~~p 51 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVLKP 51 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4789999999999999999998655
No 459
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=87.69 E-value=0.43 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
-++++|..+|||||||+.|+|..
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~Gl~ 57 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSKVIAGHP 57 (252)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 56799999999999999999973
No 460
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=87.69 E-value=0.45 Score=50.96 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++|+|..+|||||||+.|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFVPY 53 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998544
No 461
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=87.69 E-value=0.44 Score=49.89 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+||||||+++|+|.--|
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~G~~~p 74 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGIYPP 74 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998544
No 462
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=87.69 E-value=0.4 Score=47.98 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=20.9
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhC
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G 81 (822)
++.+-.||+|+.++||||+|+||.-
T Consensus 17 f~~g~~vi~G~Ng~GKStil~ai~~ 41 (202)
T PF13476_consen 17 FSPGLNVIYGPNGSGKSTILEAIRY 41 (202)
T ss_dssp --SEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4557889999999999999999964
No 463
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=87.65 E-value=0.37 Score=48.28 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|||+|..+||||||+++|++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999886
No 464
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.65 E-value=1.6 Score=44.65 Aligned_cols=92 Identities=13% Similarity=0.115 Sum_probs=54.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccc----hHHHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWC----SSLWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~----nq~il~lar~~Dp~g~RTIgViT 241 (822)
..+++-|.=|- ..++.+=+.|.++-..||.+| |+++--- ..+..++..+-+..+..+++..|
T Consensus 61 ~~f~vWDvGGq-------------~k~R~lW~~Y~~~t~~lIfVv-DS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aN 126 (181)
T KOG0070|consen 61 ISFTVWDVGGQ-------------EKLRPLWKHYFQNTQGLIFVV-DSSDRERIEEAKEELHRMLAEPELRNAPLLVFAN 126 (181)
T ss_pred eEEEEEecCCC-------------cccccchhhhccCCcEEEEEE-eCCcHHHHHHHHHHHHHHHcCcccCCceEEEEec
Confidence 45778886663 245667788999998555555 5442211 12233344444556788888999
Q ss_pred CCCccccccccHHHHHHHhhhcCCcCCCCCCcEEe
Q 003415 242 KFDNRLKEFSDRWEVDRYLSASGYLGENTRPFFVA 276 (822)
Q Consensus 242 K~D~~~~~~s~~~~v~~~l~~~G~l~~~~~gw~v~ 276 (822)
|-|+ ++.-...++...|..+.+ ..++||+-
T Consensus 127 KqD~--~~als~~ei~~~L~l~~l---~~~~w~iq 156 (181)
T KOG0070|consen 127 KQDL--PGALSAAEITNKLGLHSL---RSRNWHIQ 156 (181)
T ss_pred hhhc--cccCCHHHHHhHhhhhcc---CCCCcEEe
Confidence 9998 443334444444433322 23689985
No 465
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=87.59 E-value=0.48 Score=49.99 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=23.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+++||+.+||||++|.+|-|..-|
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~ 54 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEP 54 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCC
Confidence 5789999999999999999998877
No 466
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=87.57 E-value=0.43 Score=50.35 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
-++++|..++||||||..|+|.-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCCc
Confidence 57899999999999999999984
No 467
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=87.54 E-value=0.4 Score=49.48 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCc
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
+...-++++|+.++|||+||+||.|.-
T Consensus 20 ~~~g~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 20 FPPGLTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred cCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 334468999999999999999999763
No 468
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.53 E-value=0.46 Score=49.71 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+||||||++.|+|.--|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFYDV 54 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhccccC
Confidence 4779999999999999999999655
No 469
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.51 E-value=0.4 Score=50.79 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
.++|+|..++||||||++|+|.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 46799999999999999999974
No 470
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=87.50 E-value=0.47 Score=49.13 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++|+|..++||||||.+|+|..-|
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~~ 56 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLYKP 56 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCC
Confidence 4779999999999999999998644
No 471
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=87.45 E-value=0.47 Score=51.09 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..++||||||+.|+|.--|
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~~p 65 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMIEP 65 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 5779999999999999999998544
No 472
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.44 E-value=0.46 Score=51.73 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+|||||||.+|+|.--|
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~~p 63 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLIIS 63 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999998655
No 473
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.44 E-value=0.46 Score=51.23 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+|||||||..|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLLRP 53 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC
Confidence 4789999999999999999998544
No 474
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.36 E-value=0.48 Score=49.76 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..++||||||+.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g~~~~ 52 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6789999999999999999999655
No 475
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=87.34 E-value=0.47 Score=50.96 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.1
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+||||||+++|+|.--|
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 63 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQPP 63 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC
Confidence 5679999999999999999998544
No 476
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=87.33 E-value=0.43 Score=44.28 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=21.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCC-ccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGF-RFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~-~fp 85 (822)
.|+|+|.++|||||+.+.|... .++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~ 26 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFP 26 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 3899999999999999999874 554
No 477
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=87.30 E-value=0.49 Score=50.53 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.8
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+|||||||..|+|.--|
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~~p 58 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSARLAP 58 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6889999999999999999998655
No 478
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=87.27 E-value=4.3 Score=42.30 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.-+++.|.+++|||++|..|.+..+.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~l 55 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIM 55 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999865544
No 479
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=87.20 E-value=0.49 Score=49.28 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++|+|..++|||||+++|+|.--|
T Consensus 42 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 66 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFYQP 66 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCC
Confidence 5799999999999999999998544
No 480
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=87.20 E-value=0.43 Score=48.62 Aligned_cols=25 Identities=28% Similarity=0.386 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..|-|.|||..+||||+|++.|.+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5678999999999999999999976
No 481
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.18 E-value=0.51 Score=48.63 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||..|+|..-|
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~~~ 50 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETP 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5899999999999999999998644
No 482
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=87.16 E-value=0.49 Score=49.70 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..++|||+||.+|+|.--|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~p 57 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDPRA 57 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC
Confidence 4679999999999999999998655
No 483
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=87.16 E-value=0.48 Score=48.41 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.2
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
--+.|||..+||||+||.+|++.=-|
T Consensus 33 eVLgiVGESGSGKtTLL~~is~rl~p 58 (258)
T COG4107 33 EVLGIVGESGSGKTTLLKCISGRLTP 58 (258)
T ss_pred cEEEEEecCCCcHHhHHHHHhcccCC
Confidence 36789999999999999999998665
No 484
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=87.16 E-value=0.5 Score=50.03 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.1
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+|||||||+.|+|..-|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLEQP 55 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4679999999999999999998544
No 485
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.14 E-value=0.49 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+|||||||+.|+|.--|
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~~p 56 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGILKP 56 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4579999999999999999998655
No 486
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=87.13 E-value=0.47 Score=50.53 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.7
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
+-.+|+|+.+|||||+|+||.+.-.+
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~ 48 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGE 48 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57899999999999999999976543
No 487
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.10 E-value=0.49 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++|+|..+|||||||..|+|.--|
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~p 61 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLLKP 61 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5679999999999999999998544
No 488
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.10 E-value=0.44 Score=50.48 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
.++++|..+||||||+++|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 57899999999999999999974
No 489
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=87.10 E-value=0.51 Score=49.69 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..++||||||..|+|.--|
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~~p 54 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKTRP 54 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999998545
No 490
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.09 E-value=0.5 Score=50.67 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=23.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVR 87 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r 87 (822)
.++|+|..++|||+||+.|+|..-|..
T Consensus 38 ~~~i~G~nGsGKSTLl~~iaG~~~~~~ 64 (257)
T PRK14246 38 IFGIMGPSGSGKSTLLKVLNRLIEIYD 64 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 689999999999999999999866533
No 491
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.09 E-value=0.49 Score=51.63 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=23.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..++|||||++.|+|.--|
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~~p 58 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLLQP 58 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCC
Confidence 5899999999999999999998655
No 492
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=87.08 E-value=0.5 Score=50.82 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+|||||||..|+|.--|
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~~p 64 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLETP 64 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999998655
No 493
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.07 E-value=0.5 Score=50.89 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..++|||||+++|+|.--|
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~~~ 61 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEKV 61 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5689999999999999999998544
No 494
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.06 E-value=0.45 Score=50.61 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.++|+|..+||||||+++|+|.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 34 VTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4779999999999999999997
No 495
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=87.03 E-value=0.52 Score=49.67 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..++||||||+.|+|.--|
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~~~ 55 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIVPR 55 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998544
No 496
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=87.00 E-value=0.46 Score=49.84 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.-=|
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4679999999999999999998433
No 497
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=86.99 E-value=0.45 Score=50.43 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
.++++|..+|||||||+.|+|.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999999984
No 498
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.99 E-value=2.6 Score=45.29 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=32.6
Q ss_pred HHHHHhcCCCCcEEEEEecCC--cccchHHHHHHHHHhCCCCCcEEEEeeC
Q 003415 194 SMVKSLASPPHRILVFLQQSS--VEWCSSLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 194 ~LV~~Yik~~~sIILaVv~A~--~D~~nq~il~lar~~Dp~g~RTIgViTK 242 (822)
.|.+...-+|. ||++=.|-+ +.++...+-++++++.-...-|+.++|+
T Consensus 155 aLARAialdPe-ll~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTH 204 (263)
T COG1127 155 ALARAIALDPE-LLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTH 204 (263)
T ss_pred HHHHHHhcCCC-EEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEC
Confidence 45556666775 666666532 4556666677888877777888888887
No 499
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=86.97 E-value=0.52 Score=50.86 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=23.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVR 87 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r 87 (822)
-+.|||+.+|||||||.+|+|.--|..
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll~p~~ 58 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLLKPSS 58 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCc
Confidence 378999999999999999999866644
No 500
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=86.95 E-value=0.46 Score=50.38 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-++|+|..+|||||||+.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999997
Done!