Query 003415
Match_columns 822
No_of_seqs 285 out of 1495
Neff 5.9
Searched_HMMs 29240
Date Tue Mar 26 00:25:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003415.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003415hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3szr_A Interferon-induced GTP- 100.0 2.4E-50 8.1E-55 473.8 46.7 483 35-581 23-508 (608)
2 3zvr_A Dynamin-1; hydrolase, D 100.0 3.3E-49 1.1E-53 469.7 45.5 492 30-594 20-518 (772)
3 3t34_A Dynamin-related protein 100.0 1.2E-38 4.2E-43 351.1 24.6 313 37-369 2-326 (360)
4 2x2e_A Dynamin-1; nitration, h 100.0 4.8E-36 1.6E-40 330.0 33.0 336 37-393 7-344 (353)
5 1jwy_B Dynamin A GTPase domain 100.0 2.3E-29 7.9E-34 270.0 28.0 306 38-363 2-315 (315)
6 2aka_B Dynamin-1; fusion prote 100.0 7.4E-28 2.5E-32 255.8 31.1 295 37-353 2-299 (299)
7 2j69_A Bacterial dynamin-like 99.5 7.5E-14 2.6E-18 166.5 19.0 172 58-248 68-245 (695)
8 4dhe_A Probable GTP-binding pr 99.1 2.6E-10 8.8E-15 115.0 12.6 127 57-246 27-157 (223)
9 2qpt_A EH domain-containing pr 99.0 5.6E-10 1.9E-14 129.8 10.6 166 58-247 64-232 (550)
10 3iev_A GTP-binding protein ERA 99.0 2.8E-09 9.5E-14 114.9 14.8 126 58-246 9-135 (308)
11 1wf3_A GTP-binding protein; GT 99.0 2.1E-09 7.3E-14 115.7 13.7 123 57-246 5-130 (301)
12 3pqc_A Probable GTP-binding pr 99.0 2.3E-09 8E-14 104.7 12.0 121 57-246 21-146 (195)
13 1svi_A GTP-binding protein YSX 99.0 2E-09 6.9E-14 105.8 10.5 126 57-247 21-148 (195)
14 3lxx_A GTPase IMAP family memb 99.0 1.5E-09 5.2E-14 111.7 9.9 126 58-247 28-159 (239)
15 3iby_A Ferrous iron transport 98.9 3.8E-09 1.3E-13 111.1 11.9 122 59-248 1-125 (256)
16 1h65_A Chloroplast outer envel 98.9 8.4E-09 2.9E-13 108.6 13.7 150 27-249 13-170 (270)
17 2f7s_A C25KG, RAS-related prot 98.9 4.8E-08 1.6E-12 98.0 17.5 67 166-246 84-154 (217)
18 3tw8_B RAS-related protein RAB 98.9 8.7E-09 3E-13 99.2 11.5 28 58-85 8-35 (181)
19 3cph_A RAS-related protein SEC 98.9 2.1E-08 7.2E-13 99.8 13.7 115 58-245 19-137 (213)
20 3bc1_A RAS-related protein RAB 98.9 4E-08 1.4E-12 95.5 15.4 67 166-246 70-140 (195)
21 3clv_A RAB5 protein, putative; 98.8 3.1E-08 1.1E-12 96.7 14.6 29 58-86 6-34 (208)
22 4dcu_A GTP-binding protein ENG 98.8 6.9E-09 2.4E-13 117.7 11.2 124 56-246 20-144 (456)
23 1zbd_A Rabphilin-3A; G protein 98.8 5.6E-08 1.9E-12 96.4 16.3 67 166-246 57-126 (203)
24 2dyk_A GTP-binding protein; GT 98.8 1.4E-08 4.9E-13 96.0 11.2 119 59-247 1-122 (161)
25 1mky_A Probable GTP-binding pr 98.8 9.6E-09 3.3E-13 116.0 11.7 120 59-246 1-123 (439)
26 2xtp_A GTPase IMAP family memb 98.8 1.7E-08 5.9E-13 105.0 12.1 125 58-246 21-152 (260)
27 1g16_A RAS-related protein SEC 98.8 1.8E-08 6.1E-13 96.0 11.2 65 167-245 53-120 (170)
28 2oil_A CATX-8, RAS-related pro 98.8 8.8E-08 3E-12 94.1 16.3 68 166-247 74-144 (193)
29 3dz8_A RAS-related protein RAB 98.8 3.9E-08 1.3E-12 96.8 13.6 67 166-246 72-141 (191)
30 2cxx_A Probable GTP-binding pr 98.8 2.2E-08 7.6E-13 97.5 11.6 122 59-247 1-136 (190)
31 2fn4_A P23, RAS-related protei 98.8 5.1E-08 1.8E-12 93.8 13.9 28 58-85 8-35 (181)
32 3t5d_A Septin-7; GTP-binding p 98.8 1.2E-08 4.2E-13 107.6 10.2 77 166-246 65-157 (274)
33 3def_A T7I23.11 protein; chlor 98.8 3.1E-08 1.1E-12 103.8 13.1 148 29-248 12-166 (262)
34 3tkl_A RAS-related protein RAB 98.8 2.3E-08 7.8E-13 98.1 11.1 84 167-264 66-152 (196)
35 2gf9_A RAS-related protein RAB 98.8 8.5E-08 2.9E-12 94.1 15.1 67 166-246 71-140 (189)
36 2qu8_A Putative nucleolar GTP- 98.8 3.2E-08 1.1E-12 100.8 12.4 125 58-247 28-156 (228)
37 3con_A GTPase NRAS; structural 98.8 8E-08 2.7E-12 94.0 14.8 68 166-247 69-140 (190)
38 1z0f_A RAB14, member RAS oncog 98.8 3.2E-08 1.1E-12 95.0 11.6 85 166-264 64-151 (179)
39 2bme_A RAB4A, RAS-related prot 98.8 2.7E-08 9.1E-13 96.8 11.1 67 167-247 60-129 (186)
40 2a5j_A RAS-related protein RAB 98.8 5.3E-08 1.8E-12 95.9 13.3 67 166-246 70-139 (191)
41 3i8s_A Ferrous iron transport 98.8 2.4E-08 8E-13 105.8 11.5 121 59-247 3-126 (274)
42 1z0j_A RAB-22, RAS-related pro 98.8 3.1E-08 1.1E-12 94.3 11.3 68 166-247 55-125 (170)
43 3lxw_A GTPase IMAP family memb 98.8 2.1E-08 7E-13 104.6 10.7 125 59-246 21-152 (247)
44 2yc2_C IFT27, small RAB-relate 98.8 7.3E-08 2.5E-12 95.2 14.2 67 166-246 73-145 (208)
45 2hjg_A GTP-binding protein ENG 98.8 2E-08 6.7E-13 113.3 10.9 121 59-246 3-124 (436)
46 2y8e_A RAB-protein 6, GH09086P 98.7 1.2E-08 3.9E-13 98.2 7.4 67 167-247 64-133 (179)
47 1u8z_A RAS-related protein RAL 98.7 4.8E-08 1.6E-12 92.4 11.6 67 167-247 53-123 (168)
48 2ew1_A RAS-related protein RAB 98.7 1.1E-07 3.7E-12 95.6 14.8 66 167-246 76-144 (201)
49 2g6b_A RAS-related protein RAB 98.7 5.1E-08 1.7E-12 94.1 11.7 68 166-247 60-130 (180)
50 2o52_A RAS-related protein RAB 98.7 1.1E-07 3.7E-12 94.8 14.3 67 166-246 74-143 (200)
51 1z08_A RAS-related protein RAB 98.7 3.4E-08 1.2E-12 94.2 10.2 84 167-264 56-142 (170)
52 1z06_A RAS-related protein RAB 98.7 1E-07 3.4E-12 93.5 13.8 68 166-247 69-141 (189)
53 1ek0_A Protein (GTP-binding pr 98.7 4.8E-08 1.6E-12 92.8 11.0 69 166-248 52-123 (170)
54 2efe_B Small GTP-binding prote 98.7 6.9E-08 2.4E-12 93.2 11.8 85 166-264 61-148 (181)
55 2il1_A RAB12; G-protein, GDP, 98.7 3.8E-08 1.3E-12 97.3 10.0 68 166-247 75-145 (192)
56 1z2a_A RAS-related protein RAB 98.7 2.1E-08 7.1E-13 95.4 7.8 27 59-85 5-31 (168)
57 2fu5_C RAS-related protein RAB 98.7 8E-08 2.7E-12 93.3 11.8 67 166-246 57-126 (183)
58 2fg5_A RAB-22B, RAS-related pr 98.7 6.2E-08 2.1E-12 95.6 11.1 85 166-264 72-159 (192)
59 2lkc_A Translation initiation 98.7 3.5E-08 1.2E-12 95.1 9.1 114 58-246 7-120 (178)
60 4dsu_A GTPase KRAS, isoform 2B 98.7 1.9E-07 6.6E-12 90.5 14.2 26 60-85 5-30 (189)
61 2bov_A RAla, RAS-related prote 98.7 4E-07 1.4E-11 89.9 16.7 30 56-85 11-40 (206)
62 1ega_A Protein (GTP-binding pr 98.7 1.7E-08 5.8E-13 108.5 7.1 122 57-246 6-129 (301)
63 4dcu_A GTP-binding protein ENG 98.7 4.4E-08 1.5E-12 111.1 10.6 76 167-247 244-320 (456)
64 3a1s_A Iron(II) transport prot 98.7 9.6E-08 3.3E-12 100.4 12.1 71 166-247 52-124 (258)
65 2a9k_A RAS-related protein RAL 98.7 1.6E-07 5.6E-12 90.7 12.9 29 57-85 16-44 (187)
66 2wji_A Ferrous iron transport 98.7 1.2E-07 4.2E-12 91.3 11.9 70 166-246 50-121 (165)
67 1kao_A RAP2A; GTP-binding prot 98.7 8.1E-08 2.8E-12 90.8 10.4 67 167-247 52-122 (167)
68 1ky3_A GTP-binding protein YPT 98.7 5.3E-08 1.8E-12 93.8 9.2 28 58-85 7-34 (182)
69 2bcg_Y Protein YP2, GTP-bindin 98.6 1.4E-07 5E-12 93.7 12.3 68 166-247 57-127 (206)
70 1wms_A RAB-9, RAB9, RAS-relate 98.6 5.3E-08 1.8E-12 93.7 8.4 28 58-85 6-33 (177)
71 1r2q_A RAS-related protein RAB 98.6 1.5E-07 5.3E-12 89.3 11.3 68 166-247 55-125 (170)
72 2gj8_A MNME, tRNA modification 98.6 1.8E-07 6E-12 91.2 11.9 73 167-246 53-128 (172)
73 3k53_A Ferrous iron transport 98.6 1.5E-07 5.1E-12 99.0 12.0 28 58-85 2-29 (271)
74 2ce2_X GTPase HRAS; signaling 98.6 1.2E-07 4.2E-12 89.2 10.1 26 60-85 4-29 (166)
75 4bas_A ADP-ribosylation factor 98.6 1E-07 3.5E-12 93.6 9.8 30 56-85 14-43 (199)
76 1x3s_A RAS-related protein RAB 98.6 2.8E-07 9.7E-12 90.0 12.6 28 58-85 14-41 (195)
77 2hjg_A GTP-binding protein ENG 98.6 1.2E-07 4.3E-12 106.7 11.4 125 58-247 174-300 (436)
78 2qtf_A Protein HFLX, GTP-bindi 98.6 2.4E-07 8.1E-12 102.4 13.4 123 58-246 178-305 (364)
79 2nzj_A GTP-binding protein REM 98.6 2.1E-07 7E-12 89.2 11.3 27 59-85 4-30 (175)
80 3q72_A GTP-binding protein RAD 98.6 1.6E-07 5.5E-12 89.3 10.3 27 59-85 2-28 (166)
81 3oes_A GTPase rhebl1; small GT 98.6 1.6E-07 5.5E-12 93.3 10.7 28 58-85 23-50 (201)
82 1c1y_A RAS-related protein RAP 98.6 3.1E-07 1.1E-11 87.0 12.1 26 60-85 4-29 (167)
83 2p5s_A RAS and EF-hand domain 98.6 6.3E-08 2.2E-12 96.1 7.5 67 166-246 77-146 (199)
84 1r8s_A ADP-ribosylation factor 98.6 3.6E-07 1.2E-11 86.7 12.2 67 166-246 44-114 (164)
85 2hxs_A RAB-26, RAS-related pro 98.6 2.4E-07 8.2E-12 89.1 11.1 28 58-85 5-32 (178)
86 2erx_A GTP-binding protein DI- 98.6 2.4E-07 8.2E-12 88.1 10.8 26 60-85 4-29 (172)
87 4djt_A GTP-binding nuclear pro 98.6 1.7E-07 5.8E-12 94.1 10.2 68 166-247 61-131 (218)
88 2ged_A SR-beta, signal recogni 98.6 3.2E-07 1.1E-11 90.0 11.6 30 56-85 45-74 (193)
89 1zd9_A ADP-ribosylation factor 98.6 4E-07 1.4E-11 89.5 12.3 67 166-246 67-137 (188)
90 3t5g_A GTP-binding protein RHE 98.5 3.4E-07 1.2E-11 88.7 11.4 27 59-85 6-32 (181)
91 4a9a_A Ribosome-interacting GT 98.5 1.1E-07 3.6E-12 105.7 8.8 120 59-245 72-194 (376)
92 2hup_A RAS-related protein RAB 98.5 4.3E-07 1.5E-11 90.6 12.4 68 166-247 78-148 (201)
93 3b1v_A Ferrous iron uptake tra 98.5 2.7E-07 9.4E-12 97.9 11.5 70 166-246 49-120 (272)
94 3cpj_B GTP-binding protein YPT 98.5 3.1E-07 1.1E-11 93.0 11.3 68 166-247 62-132 (223)
95 2e87_A Hypothetical protein PH 98.5 1.4E-06 4.7E-11 95.6 16.8 123 57-246 165-293 (357)
96 2fh5_B SR-beta, signal recogni 98.5 4E-07 1.4E-11 91.0 11.5 28 58-85 6-33 (214)
97 2wjg_A FEOB, ferrous iron tran 98.5 3.6E-07 1.2E-11 89.0 10.8 30 56-85 4-33 (188)
98 1vg8_A RAS-related protein RAB 98.5 1.4E-07 4.8E-12 93.4 7.5 28 58-85 7-34 (207)
99 3kkq_A RAS-related protein M-R 98.5 8.8E-07 3E-11 85.9 12.6 29 57-85 16-44 (183)
100 1ksh_A ARF-like protein 2; sma 98.5 7.5E-07 2.6E-11 86.7 12.1 67 166-246 62-132 (186)
101 3q85_A GTP-binding protein REM 98.5 4.9E-07 1.7E-11 86.2 10.5 27 59-85 2-28 (169)
102 3gee_A MNME, tRNA modification 98.5 1.8E-07 6.3E-12 106.9 8.8 72 166-246 281-356 (476)
103 1upt_A ARL1, ADP-ribosylation 98.5 6.2E-07 2.1E-11 85.5 11.2 67 166-246 51-121 (171)
104 2h17_A ADP-ribosylation factor 98.5 3.9E-07 1.3E-11 88.8 9.9 67 166-246 65-135 (181)
105 1f6b_A SAR1; gtpases, N-termin 98.5 2.8E-07 9.7E-12 91.8 9.0 30 56-85 22-51 (198)
106 1zj6_A ADP-ribosylation factor 98.5 4.4E-07 1.5E-11 88.8 9.9 67 166-246 60-130 (187)
107 3llu_A RAS-related GTP-binding 98.5 1E-06 3.4E-11 87.3 12.2 117 58-246 19-142 (196)
108 1nrj_B SR-beta, signal recogni 98.5 3.4E-07 1.2E-11 91.8 8.9 29 57-85 10-38 (218)
109 2atv_A RERG, RAS-like estrogen 98.4 5.9E-07 2E-11 88.7 10.1 28 58-85 27-54 (196)
110 1mh1_A RAC1; GTP-binding, GTPa 98.4 5.4E-07 1.9E-11 87.1 9.6 65 167-246 54-122 (186)
111 2h57_A ADP-ribosylation factor 98.4 2.8E-07 9.5E-12 90.4 7.5 67 166-246 67-139 (190)
112 3qq5_A Small GTP-binding prote 98.4 5.1E-07 1.8E-11 101.7 10.5 122 58-247 33-154 (423)
113 3dpu_A RAB family protein; roc 98.4 1.9E-06 6.6E-11 99.5 15.0 149 34-247 14-164 (535)
114 1xzp_A Probable tRNA modificat 98.4 1.8E-07 6E-12 107.2 6.2 118 60-246 244-363 (482)
115 1lnz_A SPO0B-associated GTP-bi 98.4 1.5E-07 5.2E-12 103.2 5.4 122 59-246 158-287 (342)
116 3reg_A RHO-like small GTPase; 98.4 6.9E-07 2.4E-11 87.9 9.6 66 167-247 72-141 (194)
117 3l0i_B RAS-related protein RAB 98.4 1E-07 3.6E-12 94.5 3.5 66 167-246 83-151 (199)
118 2atx_A Small GTP binding prote 98.4 5.8E-07 2E-11 88.3 8.8 66 166-246 66-135 (194)
119 3c5c_A RAS-like protein 12; GD 98.4 1.6E-06 5.4E-11 85.3 11.8 26 60-85 22-47 (187)
120 1fzq_A ADP-ribosylation factor 98.4 1.6E-06 5.6E-11 84.8 11.8 67 166-246 60-130 (181)
121 2fv8_A H6, RHO-related GTP-bin 98.4 4.2E-07 1.4E-11 90.9 7.6 66 166-246 73-142 (207)
122 1moz_A ARL1, ADP-ribosylation 98.4 5.8E-07 2E-11 87.0 8.4 67 166-246 62-132 (183)
123 2gco_A H9, RHO-related GTP-bin 98.4 2.6E-07 8.8E-12 92.0 5.9 66 166-246 73-142 (201)
124 2b6h_A ADP-ribosylation factor 98.4 1E-06 3.5E-11 87.2 9.7 28 58-85 28-55 (192)
125 2q3h_A RAS homolog gene family 98.4 9.6E-07 3.3E-11 87.2 9.4 65 167-246 69-137 (201)
126 2j1l_A RHO-related GTP-binding 98.4 4.6E-07 1.6E-11 91.3 7.0 65 167-246 83-151 (214)
127 3t1o_A Gliding protein MGLA; G 98.4 5.6E-06 1.9E-10 80.6 14.5 82 167-264 75-164 (198)
128 1m2o_B GTP-binding protein SAR 98.3 2.7E-06 9.1E-11 84.0 12.0 28 58-85 22-49 (190)
129 3geh_A MNME, tRNA modification 98.3 3.9E-07 1.3E-11 103.8 6.5 72 166-247 272-344 (462)
130 4gzl_A RAS-related C3 botulinu 98.3 2.9E-07 9.9E-12 92.1 4.8 65 167-246 79-147 (204)
131 2iwr_A Centaurin gamma 1; ANK 98.3 8.2E-07 2.8E-11 85.7 7.8 27 59-85 7-33 (178)
132 3cbq_A GTP-binding protein REM 98.3 2.2E-06 7.6E-11 85.2 11.0 28 58-85 22-49 (195)
133 2gf0_A GTP-binding protein DI- 98.3 4.4E-07 1.5E-11 89.0 5.8 28 58-85 7-34 (199)
134 3bwd_D RAC-like GTP-binding pr 98.3 6.9E-07 2.4E-11 86.2 6.3 66 166-246 56-125 (182)
135 3tr5_A RF-3, peptide chain rel 98.3 1.6E-06 5.5E-11 100.3 10.5 135 58-246 12-147 (528)
136 2x77_A ADP-ribosylation factor 98.3 1.1E-06 3.9E-11 85.9 7.9 28 58-85 21-48 (189)
137 1mky_A Probable GTP-binding pr 98.3 8.6E-07 2.9E-11 100.0 7.9 126 58-247 179-306 (439)
138 2j0v_A RAC-like GTP-binding pr 98.3 1.9E-06 6.5E-11 86.0 9.3 66 166-246 57-126 (212)
139 3ljb_A Interferon-induced GTP- 98.3 3.2E-06 1.1E-10 89.7 11.3 170 372-585 2-172 (271)
140 1wxq_A GTP-binding protein; st 98.3 8.7E-07 3E-11 99.1 7.3 40 61-100 2-41 (397)
141 3j2k_7 ERF3, eukaryotic polype 98.3 2.9E-06 9.9E-11 95.9 11.4 72 157-246 87-168 (439)
142 3o47_A ADP-ribosylation factor 98.2 1.3E-06 4.4E-11 95.0 7.7 67 166-246 209-279 (329)
143 3lvq_E ARF-GAP with SH3 domain 98.2 2.2E-06 7.6E-11 97.7 9.7 111 59-246 322-436 (497)
144 2qag_B Septin-6, protein NEDD5 98.2 1.5E-06 5E-11 98.0 8.0 81 166-248 95-191 (427)
145 3izq_1 HBS1P, elongation facto 98.2 3.7E-06 1.3E-10 98.9 11.6 144 58-246 166-318 (611)
146 1m7b_A RND3/RHOE small GTP-bin 98.2 3.6E-06 1.2E-10 82.1 9.2 66 166-246 55-124 (184)
147 1pui_A ENGB, probable GTP-bind 98.2 4.9E-06 1.7E-10 82.7 10.3 74 167-246 73-150 (210)
148 2qag_A Septin-2, protein NEDD5 98.2 1.9E-06 6.4E-11 95.0 7.8 79 166-246 95-187 (361)
149 2wkq_A NPH1-1, RAS-related C3 98.2 3.4E-06 1.2E-10 89.7 9.6 65 167-246 204-272 (332)
150 3q3j_B RHO-related GTP-binding 98.2 5.1E-06 1.7E-10 83.8 10.3 66 166-246 75-144 (214)
151 1gwn_A RHO-related GTP-binding 98.2 3.2E-06 1.1E-10 85.0 8.4 66 166-246 76-145 (205)
152 3r7w_A Gtpase1, GTP-binding pr 98.1 1.1E-05 3.9E-10 86.5 12.5 72 166-247 52-129 (307)
153 3th5_A RAS-related C3 botulinu 97.4 3E-07 1E-11 91.4 0.0 66 166-246 78-147 (204)
154 3izy_P Translation initiation 98.1 5.3E-07 1.8E-11 104.4 1.9 115 58-246 3-117 (537)
155 3p26_A Elongation factor 1 alp 98.1 3.8E-06 1.3E-10 95.9 8.9 80 150-246 96-184 (483)
156 3sjy_A Translation initiation 98.1 1E-05 3.5E-10 90.1 11.9 65 166-246 75-142 (403)
157 3ihw_A Centg3; RAS, centaurin, 98.1 3.2E-06 1.1E-10 83.2 6.8 28 58-85 19-46 (184)
158 3gj0_A GTP-binding nuclear pro 98.1 1.2E-06 4.2E-11 88.2 3.5 67 166-247 64-133 (221)
159 1f60_A Elongation factor EEF1A 98.1 6.8E-06 2.3E-10 93.4 9.8 72 157-246 77-158 (458)
160 1g7s_A Translation initiation 98.1 3.9E-06 1.3E-10 98.5 7.5 64 166-246 70-135 (594)
161 1wb1_A Translation elongation 98.0 6.5E-06 2.2E-10 94.2 8.8 64 166-246 73-138 (482)
162 2h5e_A Peptide chain release f 98.0 1.2E-05 4E-10 93.2 10.8 74 157-246 74-147 (529)
163 1zun_B Sulfate adenylate trans 98.0 2E-05 6.7E-10 88.8 12.4 65 166-246 104-170 (434)
164 2f9l_A RAB11B, member RAS onco 98.0 3E-05 1E-09 76.8 12.1 27 59-85 5-31 (199)
165 2xex_A Elongation factor G; GT 98.0 5E-06 1.7E-10 99.2 7.6 65 166-247 75-141 (693)
166 2c78_A Elongation factor TU-A; 98.0 1.4E-05 4.8E-10 89.1 10.6 73 156-246 66-141 (405)
167 2qag_C Septin-7; cell cycle, c 98.0 1.8E-05 6E-10 89.1 10.9 26 61-86 33-58 (418)
168 2zej_A Dardarin, leucine-rich 98.0 6.3E-06 2.2E-10 80.6 5.9 23 60-82 3-25 (184)
169 1zo1_I IF2, translation initia 97.9 3.5E-06 1.2E-10 96.8 3.6 28 58-85 3-30 (501)
170 1oix_A RAS-related protein RAB 97.9 4.6E-05 1.6E-09 75.2 11.3 28 59-86 29-56 (191)
171 4dkx_A RAS-related protein RAB 97.9 3.1E-05 1.1E-09 79.2 9.9 68 166-247 62-132 (216)
172 1jny_A EF-1-alpha, elongation 97.9 3E-05 1E-09 87.3 10.6 72 159-247 78-158 (435)
173 1kk1_A EIF2gamma; initiation o 97.9 6E-05 2E-09 84.1 12.7 65 166-246 83-150 (410)
174 1d2e_A Elongation factor TU (E 97.9 3.5E-05 1.2E-09 85.8 10.7 65 165-246 65-132 (397)
175 3ec1_A YQEH GTPase; atnos1, at 97.9 1.3E-05 4.6E-10 88.5 7.2 23 60-82 163-185 (369)
176 1s0u_A EIF-2-gamma, translatio 97.9 7.6E-05 2.6E-09 83.3 13.1 66 166-247 81-149 (408)
177 2rdo_7 EF-G, elongation factor 97.9 3.9E-05 1.3E-09 91.7 11.1 67 166-247 82-148 (704)
178 2ywe_A GTP-binding protein LEP 97.9 2.3E-05 8E-10 91.9 8.9 64 166-246 73-138 (600)
179 3cb4_D GTP-binding protein LEP 97.8 1.3E-05 4.6E-10 94.0 6.5 64 166-246 71-136 (599)
180 1dar_A EF-G, elongation factor 97.8 2.7E-05 9.2E-10 92.9 8.7 65 165-246 76-142 (691)
181 2elf_A Protein translation elo 97.8 2.2E-05 7.4E-10 86.9 7.4 62 166-245 60-125 (370)
182 3sop_A Neuronal-specific septi 97.8 4E-05 1.4E-09 81.2 8.8 26 61-86 4-29 (270)
183 2g3y_A GTP-binding protein GEM 97.8 0.00025 8.7E-09 72.0 14.3 27 58-84 36-62 (211)
184 3p32_A Probable GTPase RV1496/ 97.8 4.3E-05 1.5E-09 83.8 8.5 25 58-82 78-102 (355)
185 2j37_W Signal recognition part 97.8 0.0001 3.4E-09 84.9 11.9 69 166-246 184-253 (504)
186 3h2y_A GTPase family protein; 97.8 2.9E-05 9.8E-10 85.9 7.0 24 60-83 161-184 (368)
187 2qnr_A Septin-2, protein NEDD5 97.8 5.9E-05 2E-09 81.0 9.3 25 61-85 20-45 (301)
188 1n0u_A EF-2, elongation factor 97.8 2.7E-05 9.4E-10 94.8 7.5 66 166-246 98-163 (842)
189 3mca_A HBS1, elongation factor 97.7 4.7E-06 1.6E-10 97.7 0.1 24 60-83 178-201 (592)
190 3dm5_A SRP54, signal recogniti 97.7 0.00017 6E-09 81.5 12.8 72 166-248 183-254 (443)
191 2dby_A GTP-binding protein; GD 97.7 0.00014 4.7E-09 80.5 11.0 39 60-98 2-40 (368)
192 2ohf_A Protein OLA1, GTP-bindi 97.7 3.8E-05 1.3E-09 85.8 6.1 39 59-97 22-60 (396)
193 2www_A Methylmalonic aciduria 97.6 0.00017 5.7E-09 79.1 11.1 28 57-84 72-99 (349)
194 1r5b_A Eukaryotic peptide chai 97.6 6.4E-05 2.2E-09 85.5 6.8 64 166-246 121-194 (467)
195 1jal_A YCHF protein; nucleotid 97.5 2.8E-05 9.5E-10 86.0 3.1 37 60-96 3-39 (363)
196 3avx_A Elongation factor TS, e 97.5 0.00014 4.9E-09 90.3 9.2 65 165-246 358-425 (1289)
197 2cjw_A GTP-binding protein GEM 97.5 0.00016 5.6E-09 71.4 8.1 25 59-83 6-30 (192)
198 1tq4_A IIGP1, interferon-induc 97.5 0.00025 8.6E-09 79.6 10.2 28 58-85 68-95 (413)
199 2v3c_C SRP54, signal recogniti 97.4 0.00055 1.9E-08 77.3 11.9 70 165-246 180-251 (432)
200 2dy1_A Elongation factor G; tr 97.4 0.00023 7.7E-09 84.6 9.1 130 58-246 8-139 (665)
201 1yrb_A ATP(GTP)binding protein 97.4 0.00042 1.4E-08 71.3 9.5 29 57-85 12-45 (262)
202 1udx_A The GTP-binding protein 97.4 0.00063 2.1E-08 76.5 11.5 25 59-83 157-181 (416)
203 1f5n_A Interferon-induced guan 97.4 0.00022 7.7E-09 83.4 8.0 26 58-83 37-62 (592)
204 1puj_A YLQF, conserved hypothe 97.3 0.00039 1.3E-08 74.0 8.6 28 58-85 119-146 (282)
205 3kl4_A SRP54, signal recogniti 97.3 0.00057 1.9E-08 77.2 9.7 73 165-246 179-251 (433)
206 3e70_C DPA, signal recognition 97.2 0.00086 2.9E-08 73.0 9.5 70 166-246 212-281 (328)
207 1ni3_A YCHF GTPase, YCHF GTP-b 97.2 0.00054 1.8E-08 76.5 7.9 40 59-98 20-60 (392)
208 3c5h_A Glucocorticoid receptor 97.1 0.00013 4.6E-09 75.9 2.3 26 58-83 18-52 (255)
209 2qm8_A GTPase/ATPase; G protei 97.1 0.001 3.4E-08 72.6 9.4 28 58-85 54-81 (337)
210 2p67_A LAO/AO transport system 97.1 0.0013 4.5E-08 71.6 9.6 26 58-83 55-80 (341)
211 1rj9_A FTSY, signal recognitio 97.0 0.0016 5.3E-08 70.2 9.1 78 166-248 185-262 (304)
212 3vqt_A RF-3, peptide chain rel 96.9 0.0021 7.3E-08 74.6 10.1 71 157-245 92-164 (548)
213 1j8m_F SRP54, signal recogniti 96.8 0.0033 1.1E-07 67.4 10.0 72 166-246 181-252 (297)
214 2yhs_A FTSY, cell division pro 96.8 0.0016 5.3E-08 74.7 7.5 74 166-248 376-453 (503)
215 3j25_A Tetracycline resistance 96.7 0.00046 1.6E-08 81.5 2.5 64 166-246 67-132 (638)
216 3cnl_A YLQF, putative uncharac 96.7 0.00095 3.2E-08 70.3 4.4 26 60-85 100-125 (262)
217 4fn5_A EF-G 1, elongation fact 96.7 0.0018 6.1E-08 77.4 7.4 64 166-246 85-150 (709)
218 2xxa_A Signal recognition part 96.7 0.0037 1.3E-07 70.6 9.1 69 166-246 184-253 (433)
219 1vma_A Cell division protein F 96.6 0.0054 1.9E-07 66.1 9.4 76 165-249 186-265 (306)
220 2px0_A Flagellar biosynthesis 96.4 0.01 3.4E-07 63.5 10.3 70 165-247 182-253 (296)
221 3r7w_B Gtpase2, GTP-binding pr 96.4 0.0098 3.4E-07 64.8 10.2 69 166-246 46-119 (331)
222 3q5d_A Atlastin-1; G protein, 96.2 0.0026 9E-08 72.0 4.6 25 58-82 66-90 (447)
223 2ffh_A Protein (FFH); SRP54, s 95.9 0.012 4.2E-07 66.1 8.1 68 166-246 181-250 (425)
224 1zu4_A FTSY; GTPase, signal re 95.8 0.027 9.4E-07 60.9 9.7 74 166-248 192-269 (320)
225 1ls1_A Signal recognition part 94.8 0.043 1.5E-06 58.5 7.3 71 166-247 181-251 (295)
226 2og2_A Putative signal recogni 94.3 0.062 2.1E-06 59.1 7.2 27 59-85 156-183 (359)
227 3b9q_A Chloroplast SRP recepto 94.2 0.041 1.4E-06 59.0 5.4 25 61-85 102-126 (302)
228 2wsm_A Hydrogenase expression/ 92.9 0.079 2.7E-06 52.6 4.6 26 58-83 29-54 (221)
229 2hf9_A Probable hydrogenase ni 91.9 0.056 1.9E-06 53.9 2.0 28 58-85 37-64 (226)
230 1kgd_A CASK, peripheral plasma 91.0 0.09 3.1E-06 51.3 2.4 22 61-82 7-28 (180)
231 1u0l_A Probable GTPase ENGC; p 90.9 0.11 3.8E-06 55.2 3.3 25 61-85 171-195 (301)
232 1lvg_A Guanylate kinase, GMP k 90.8 0.093 3.2E-06 52.2 2.4 22 61-82 6-27 (198)
233 3tif_A Uncharacterized ABC tra 90.8 0.12 4.2E-06 53.1 3.3 25 61-85 33-57 (235)
234 1znw_A Guanylate kinase, GMP k 90.8 0.094 3.2E-06 52.2 2.4 23 61-83 22-44 (207)
235 2pcj_A ABC transporter, lipopr 90.8 0.12 4E-06 52.8 3.1 25 61-85 32-56 (224)
236 1ex7_A Guanylate kinase; subst 90.5 0.1 3.5E-06 52.1 2.3 20 62-81 4-23 (186)
237 1mv5_A LMRA, multidrug resista 90.3 0.15 5.3E-06 52.5 3.5 25 61-85 30-54 (243)
238 1zp6_A Hypothetical protein AT 90.3 0.13 4.5E-06 49.8 2.8 22 61-82 11-32 (191)
239 1s96_A Guanylate kinase, GMP k 90.2 0.11 3.8E-06 52.9 2.4 23 61-83 18-40 (219)
240 2onk_A Molybdate/tungstate ABC 90.2 0.15 5.2E-06 52.7 3.3 25 61-85 26-50 (240)
241 3ney_A 55 kDa erythrocyte memb 90.1 0.12 4.1E-06 52.2 2.5 25 58-82 18-42 (197)
242 1sgw_A Putative ABC transporte 90.1 0.15 5.3E-06 51.8 3.3 25 61-85 37-61 (214)
243 3tr0_A Guanylate kinase, GMP k 90.1 0.12 4E-06 50.7 2.4 22 61-82 9-30 (205)
244 2rcn_A Probable GTPase ENGC; Y 90.1 0.15 5.3E-06 56.0 3.5 24 61-84 217-240 (358)
245 3c8u_A Fructokinase; YP_612366 90.0 0.12 4.1E-06 51.5 2.3 23 61-83 24-46 (208)
246 2ff7_A Alpha-hemolysin translo 90.0 0.16 5.5E-06 52.7 3.3 49 191-242 152-202 (247)
247 2pze_A Cystic fibrosis transme 89.9 0.17 5.7E-06 51.8 3.3 25 61-85 36-60 (229)
248 1g6h_A High-affinity branched- 89.8 0.17 5.7E-06 52.8 3.3 25 61-85 35-59 (257)
249 4g1u_C Hemin import ATP-bindin 89.8 0.18 6E-06 53.0 3.5 25 61-85 39-63 (266)
250 1b0u_A Histidine permease; ABC 89.8 0.17 5.7E-06 53.0 3.3 25 61-85 34-58 (262)
251 2pjz_A Hypothetical protein ST 89.8 0.16 5.5E-06 53.3 3.2 26 61-87 32-57 (263)
252 3a00_A Guanylate kinase, GMP k 89.8 0.13 4.5E-06 50.3 2.4 22 62-83 4-25 (186)
253 3kta_A Chromosome segregation 89.8 0.16 5.3E-06 49.1 2.9 28 57-84 24-51 (182)
254 1t9h_A YLOQ, probable GTPase E 89.6 0.074 2.5E-06 57.3 0.5 25 61-85 175-199 (307)
255 2cbz_A Multidrug resistance-as 89.6 0.15 5.3E-06 52.4 2.9 25 61-85 33-57 (237)
256 1ji0_A ABC transporter; ATP bi 89.6 0.18 6.1E-06 52.0 3.3 25 61-85 34-58 (240)
257 1np6_A Molybdopterin-guanine d 89.6 0.16 5.5E-06 50.0 2.9 25 58-82 5-29 (174)
258 3tau_A Guanylate kinase, GMP k 89.4 0.17 6E-06 50.4 3.0 22 61-82 10-31 (208)
259 2d2e_A SUFC protein; ABC-ATPas 89.3 0.17 5.7E-06 52.5 2.9 49 192-242 151-201 (250)
260 2ixe_A Antigen peptide transpo 89.3 0.19 6.5E-06 52.9 3.3 50 192-242 164-215 (271)
261 1z6g_A Guanylate kinase; struc 89.3 0.15 5.1E-06 51.5 2.4 23 61-83 25-47 (218)
262 4ido_A Atlastin-1; GTPase, GTP 89.3 0.26 8.8E-06 55.9 4.5 22 59-80 67-88 (457)
263 1vpl_A ABC transporter, ATP-bi 89.2 0.19 6.6E-06 52.4 3.3 25 61-85 43-67 (256)
264 3gfo_A Cobalt import ATP-bindi 89.2 0.2 6.7E-06 53.0 3.3 25 61-85 36-60 (275)
265 2bbw_A Adenylate kinase 4, AK4 89.1 0.19 6.5E-06 51.3 3.1 26 60-85 28-56 (246)
266 2olj_A Amino acid ABC transpor 89.1 0.2 6.8E-06 52.6 3.3 25 61-85 52-76 (263)
267 2yz2_A Putative ABC transporte 89.1 0.2 6.9E-06 52.4 3.3 25 61-85 35-59 (266)
268 1ye8_A Protein THEP1, hypothet 89.0 0.16 5.6E-06 49.9 2.4 22 61-82 2-23 (178)
269 2nq2_C Hypothetical ABC transp 88.9 0.21 7.3E-06 51.9 3.3 25 61-85 33-57 (253)
270 3b85_A Phosphate starvation-in 88.7 0.12 4.2E-06 52.2 1.4 29 61-92 24-52 (208)
271 1htw_A HI0065; nucleotide-bind 88.7 0.17 5.8E-06 49.0 2.3 25 61-86 35-59 (158)
272 1f2t_A RAD50 ABC-ATPase; DNA d 88.6 0.25 8.4E-06 47.1 3.3 25 57-81 21-45 (149)
273 2qi9_C Vitamin B12 import ATP- 88.6 0.22 7.6E-06 51.7 3.2 25 61-85 28-52 (249)
274 2ihy_A ABC transporter, ATP-bi 88.5 0.23 7.8E-06 52.5 3.3 25 61-85 49-73 (279)
275 2qor_A Guanylate kinase; phosp 88.4 0.17 5.9E-06 50.1 2.2 25 58-82 11-35 (204)
276 2ghi_A Transport protein; mult 88.4 0.23 7.7E-06 51.9 3.1 48 192-242 163-212 (260)
277 2zu0_C Probable ATP-dependent 88.3 0.21 7.2E-06 52.4 2.8 49 192-242 172-222 (267)
278 2j41_A Guanylate kinase; GMP, 88.1 0.22 7.6E-06 48.7 2.7 25 61-85 8-32 (207)
279 2kjq_A DNAA-related protein; s 88.1 0.21 7.3E-06 47.5 2.5 47 28-85 16-62 (149)
280 1kag_A SKI, shikimate kinase I 88.0 0.21 7.1E-06 47.6 2.4 22 61-82 6-27 (173)
281 3asz_A Uridine kinase; cytidin 87.9 0.19 6.6E-06 49.6 2.2 22 61-82 8-29 (211)
282 4e22_A Cytidylate kinase; P-lo 87.5 0.29 9.9E-06 50.5 3.3 26 60-85 28-56 (252)
283 3nh6_A ATP-binding cassette SU 87.4 0.24 8.1E-06 53.3 2.6 25 61-85 82-106 (306)
284 2f1r_A Molybdopterin-guanine d 87.2 0.16 5.4E-06 49.9 1.0 26 60-85 3-28 (171)
285 2bbs_A Cystic fibrosis transme 86.9 0.28 9.6E-06 52.2 2.8 25 61-85 66-90 (290)
286 2pt7_A CAG-ALFA; ATPase, prote 86.8 0.27 9.3E-06 53.1 2.7 25 61-85 173-197 (330)
287 2eyu_A Twitching motility prot 86.7 0.26 9E-06 51.5 2.4 25 61-85 27-51 (261)
288 2bdt_A BH3686; alpha-beta prot 86.6 0.28 9.5E-06 47.7 2.4 20 62-81 5-24 (189)
289 3lnc_A Guanylate kinase, GMP k 86.6 0.25 8.6E-06 49.8 2.1 22 61-82 29-51 (231)
290 4eun_A Thermoresistant glucoki 86.6 0.27 9.4E-06 48.4 2.4 23 60-82 30-52 (200)
291 2gza_A Type IV secretion syste 86.6 0.3 1E-05 53.4 2.9 23 61-83 177-199 (361)
292 2v9p_A Replication protein E1; 86.5 0.23 7.9E-06 53.4 1.9 23 61-83 128-150 (305)
293 2yv5_A YJEQ protein; hydrolase 86.4 0.37 1.3E-05 51.3 3.4 24 61-85 167-190 (302)
294 1z47_A CYSA, putative ABC-tran 86.4 0.36 1.2E-05 53.0 3.4 25 61-85 43-67 (355)
295 1knq_A Gluconate kinase; ALFA/ 86.3 0.3 1E-05 46.7 2.4 22 61-82 10-31 (175)
296 4gp7_A Metallophosphoesterase; 86.3 0.34 1.2E-05 46.8 2.8 21 61-81 11-31 (171)
297 2it1_A 362AA long hypothetical 86.1 0.38 1.3E-05 52.9 3.3 25 61-85 31-55 (362)
298 2yyz_A Sugar ABC transporter, 86.0 0.39 1.3E-05 52.8 3.4 25 61-85 31-55 (359)
299 3fvq_A Fe(3+) IONS import ATP- 85.9 0.37 1.3E-05 53.0 3.1 25 61-85 32-56 (359)
300 3qf7_A RAD50; ABC-ATPase, ATPa 85.9 0.39 1.3E-05 52.6 3.3 25 57-81 21-45 (365)
301 1g29_1 MALK, maltose transport 85.7 0.4 1.4E-05 52.9 3.4 25 61-85 31-55 (372)
302 3kb2_A SPBC2 prophage-derived 85.6 0.39 1.3E-05 45.2 2.9 22 60-81 2-23 (173)
303 1sxj_C Activator 1 40 kDa subu 85.5 0.58 2E-05 50.1 4.4 27 58-84 45-71 (340)
304 3d31_A Sulfate/molybdate ABC t 85.5 0.33 1.1E-05 53.1 2.5 25 61-85 28-52 (348)
305 1v43_A Sugar-binding transport 85.4 0.43 1.5E-05 52.7 3.3 25 61-85 39-63 (372)
306 3tui_C Methionine import ATP-b 85.3 0.44 1.5E-05 52.5 3.3 51 191-242 170-222 (366)
307 1jjv_A Dephospho-COA kinase; P 85.2 0.4 1.4E-05 47.2 2.8 25 61-85 4-28 (206)
308 4a74_A DNA repair and recombin 85.0 0.47 1.6E-05 47.0 3.2 25 61-85 27-51 (231)
309 3aez_A Pantothenate kinase; tr 85.0 0.35 1.2E-05 52.0 2.4 29 57-85 87-116 (312)
310 3lw7_A Adenylate kinase relate 84.6 0.51 1.8E-05 44.1 3.1 20 60-79 2-21 (179)
311 3rlf_A Maltose/maltodextrin im 84.6 0.48 1.7E-05 52.5 3.3 25 61-85 31-55 (381)
312 3uie_A Adenylyl-sulfate kinase 84.6 0.39 1.3E-05 47.3 2.4 24 60-83 26-49 (200)
313 1xjc_A MOBB protein homolog; s 84.6 0.46 1.6E-05 46.7 2.9 25 58-82 3-27 (169)
314 3qks_A DNA double-strand break 84.5 0.53 1.8E-05 47.1 3.3 24 57-80 21-44 (203)
315 3ec2_A DNA replication protein 84.4 0.93 3.2E-05 43.6 5.0 46 39-85 19-64 (180)
316 3jvv_A Twitching mobility prot 84.3 0.27 9.2E-06 53.9 1.1 25 61-85 125-149 (356)
317 2i3b_A HCR-ntpase, human cance 84.2 0.42 1.4E-05 47.5 2.3 22 61-82 3-24 (189)
318 1oxx_K GLCV, glucose, ABC tran 84.0 0.35 1.2E-05 52.9 1.9 25 61-85 33-57 (353)
319 1gvn_B Zeta; postsegregational 83.6 1.4 4.9E-05 46.3 6.4 21 61-81 35-55 (287)
320 2oap_1 GSPE-2, type II secreti 83.5 0.48 1.6E-05 54.4 2.8 22 62-83 263-284 (511)
321 1lw7_A Transcriptional regulat 83.4 0.45 1.5E-05 51.8 2.4 25 61-85 172-196 (365)
322 2jeo_A Uridine-cytidine kinase 83.2 0.48 1.6E-05 48.4 2.4 22 61-82 27-48 (245)
323 2qt1_A Nicotinamide riboside k 83.2 0.57 2E-05 46.2 2.9 28 55-82 16-44 (207)
324 3t61_A Gluconokinase; PSI-biol 83.0 0.51 1.7E-05 46.4 2.4 23 60-82 19-41 (202)
325 1cke_A CK, MSSA, protein (cyti 82.9 0.56 1.9E-05 46.6 2.7 23 60-82 6-28 (227)
326 2if2_A Dephospho-COA kinase; a 82.8 0.48 1.6E-05 46.4 2.1 24 61-84 3-26 (204)
327 3gd7_A Fusion complex of cysti 82.7 0.57 1.9E-05 52.0 2.9 23 61-83 49-71 (390)
328 2vp4_A Deoxynucleoside kinase; 82.5 0.5 1.7E-05 47.8 2.2 22 61-82 22-43 (230)
329 1ly1_A Polynucleotide kinase; 82.4 0.65 2.2E-05 44.1 2.8 21 61-81 4-24 (181)
330 1p9r_A General secretion pathw 82.3 0.47 1.6E-05 53.1 2.0 25 61-85 169-193 (418)
331 1nij_A Hypothetical protein YJ 82.2 0.47 1.6E-05 50.8 1.9 26 58-83 3-28 (318)
332 1rz3_A Hypothetical protein rb 82.1 0.53 1.8E-05 46.5 2.1 22 61-82 24-45 (201)
333 1sq5_A Pantothenate kinase; P- 81.9 0.52 1.8E-05 50.2 2.1 22 61-82 82-103 (308)
334 1qhx_A CPT, protein (chloramph 81.7 0.71 2.4E-05 44.0 2.8 21 61-81 5-25 (178)
335 2jaq_A Deoxyguanosine kinase; 81.7 0.7 2.4E-05 44.8 2.8 21 61-81 2-22 (205)
336 1kht_A Adenylate kinase; phosp 81.5 0.72 2.5E-05 44.2 2.8 21 61-81 5-25 (192)
337 2ewv_A Twitching motility prot 81.3 0.59 2E-05 51.3 2.4 24 61-84 138-161 (372)
338 3cm0_A Adenylate kinase; ATP-b 81.2 0.8 2.7E-05 43.9 3.0 20 61-80 6-25 (186)
339 1nks_A Adenylate kinase; therm 80.9 0.73 2.5E-05 44.1 2.6 21 61-81 3-23 (194)
340 3vaa_A Shikimate kinase, SK; s 80.8 0.67 2.3E-05 45.6 2.4 22 60-81 26-47 (199)
341 3iij_A Coilin-interacting nucl 80.5 0.85 2.9E-05 43.8 3.0 27 59-85 11-40 (180)
342 2npi_A Protein CLP1; CLP1-PCF1 80.4 0.62 2.1E-05 52.8 2.2 28 58-85 137-164 (460)
343 2ehv_A Hypothetical protein PH 80.0 0.73 2.5E-05 46.2 2.4 22 61-82 32-53 (251)
344 2rhm_A Putative kinase; P-loop 79.7 0.84 2.9E-05 43.9 2.6 21 61-81 7-27 (193)
345 3qkt_A DNA double-strand break 79.7 0.95 3.3E-05 48.7 3.3 24 57-80 21-44 (339)
346 1yqt_A RNAse L inhibitor; ATP- 79.6 0.97 3.3E-05 52.1 3.5 25 61-85 49-73 (538)
347 1e69_A Chromosome segregation 79.4 0.97 3.3E-05 48.3 3.2 26 57-82 22-47 (322)
348 2v54_A DTMP kinase, thymidylat 79.4 0.93 3.2E-05 44.1 2.8 22 61-82 6-27 (204)
349 3b5x_A Lipid A export ATP-bind 79.2 0.96 3.3E-05 52.5 3.3 25 61-85 371-395 (582)
350 2plr_A DTMP kinase, probable t 79.1 0.96 3.3E-05 44.1 2.8 22 60-81 5-26 (213)
351 2yl4_A ATP-binding cassette SU 79.1 0.88 3E-05 53.0 3.0 25 61-85 372-396 (595)
352 3b60_A Lipid A export ATP-bind 79.1 0.9 3.1E-05 52.7 3.1 25 61-85 371-395 (582)
353 1ixz_A ATP-dependent metallopr 78.9 1.6 5.6E-05 44.3 4.6 22 61-82 51-72 (254)
354 1gtv_A TMK, thymidylate kinase 78.7 0.55 1.9E-05 46.2 0.9 22 61-82 2-23 (214)
355 2pez_A Bifunctional 3'-phospho 78.5 0.89 3.1E-05 43.6 2.4 22 61-82 7-28 (179)
356 3auy_A DNA double-strand break 78.5 1 3.5E-05 49.2 3.1 24 57-80 23-46 (371)
357 3qf4_B Uncharacterized ABC tra 78.4 0.98 3.3E-05 52.7 3.1 25 61-85 383-407 (598)
358 3trf_A Shikimate kinase, SK; a 78.3 1.2 4.1E-05 42.7 3.2 22 59-80 5-26 (185)
359 1w1w_A Structural maintenance 78.1 0.85 2.9E-05 50.7 2.4 26 60-85 27-52 (430)
360 1yqt_A RNAse L inhibitor; ATP- 78.0 1.2 4E-05 51.4 3.6 25 61-85 314-338 (538)
361 2z0h_A DTMP kinase, thymidylat 78.0 1.1 3.8E-05 43.2 2.9 21 62-82 3-23 (197)
362 2o5v_A DNA replication and rep 77.9 1 3.5E-05 49.4 2.8 27 57-83 24-50 (359)
363 4aby_A DNA repair protein RECN 77.9 0.39 1.3E-05 52.7 -0.5 27 57-83 58-84 (415)
364 2p5t_B PEZT; postsegregational 77.8 1.7 5.7E-05 44.6 4.3 50 30-82 5-55 (253)
365 3ozx_A RNAse L inhibitor; ATP 77.8 1.2 4.1E-05 51.5 3.5 25 61-85 296-320 (538)
366 3tqc_A Pantothenate kinase; bi 77.8 0.9 3.1E-05 49.1 2.4 22 61-82 94-115 (321)
367 1y63_A LMAJ004144AAA protein; 77.8 1.2 4.3E-05 43.1 3.2 24 59-82 10-33 (184)
368 3bk7_A ABC transporter ATP-bin 77.4 1.2 4.2E-05 52.2 3.5 25 61-85 119-143 (607)
369 3j16_B RLI1P; ribosome recycli 77.4 1.2 4.2E-05 52.2 3.5 25 61-85 105-129 (608)
370 1nn5_A Similar to deoxythymidy 77.4 1.1 3.7E-05 43.9 2.6 21 61-81 11-31 (215)
371 1qhl_A Protein (cell division 77.3 0.37 1.3E-05 49.5 -0.8 23 63-85 31-53 (227)
372 3ozx_A RNAse L inhibitor; ATP 77.2 1.3 4.3E-05 51.3 3.5 25 61-85 27-51 (538)
373 1odf_A YGR205W, hypothetical 3 77.2 0.97 3.3E-05 48.0 2.4 24 59-82 31-54 (290)
374 2yvu_A Probable adenylyl-sulfa 77.2 1 3.5E-05 43.5 2.4 23 60-82 14-36 (186)
375 3euj_A Chromosome partition pr 77.1 0.88 3E-05 51.9 2.1 25 61-85 31-55 (483)
376 3bk7_A ABC transporter ATP-bin 76.9 1.3 4.5E-05 51.9 3.6 25 61-85 384-408 (607)
377 1via_A Shikimate kinase; struc 76.8 1.3 4.3E-05 42.4 2.8 22 60-81 5-26 (175)
378 2wwf_A Thymidilate kinase, put 76.7 1.2 4E-05 43.7 2.6 22 60-81 11-32 (212)
379 2pbr_A DTMP kinase, thymidylat 76.6 1.3 4.4E-05 42.5 2.9 21 61-81 2-22 (195)
380 4a82_A Cystic fibrosis transme 76.6 0.93 3.2E-05 52.6 2.2 25 61-85 369-393 (578)
381 1iy2_A ATP-dependent metallopr 76.6 1.3 4.6E-05 45.8 3.2 22 61-82 75-96 (278)
382 3qf4_A ABC transporter, ATP-bi 76.6 1.1 3.7E-05 52.3 2.7 25 61-85 371-395 (587)
383 3bos_A Putative DNA replicatio 76.5 2.9 0.0001 41.1 5.6 25 58-82 51-75 (242)
384 1in4_A RUVB, holliday junction 76.2 1.7 5.9E-05 46.5 4.0 46 35-82 29-74 (334)
385 2iyv_A Shikimate kinase, SK; t 75.9 1.3 4.3E-05 42.6 2.6 22 60-81 3-24 (184)
386 3fb4_A Adenylate kinase; psych 75.9 1.3 4.6E-05 43.6 2.9 21 61-81 2-22 (216)
387 2w0m_A SSO2452; RECA, SSPF, un 75.7 1.2 4E-05 43.9 2.4 25 61-85 25-49 (235)
388 1vht_A Dephospho-COA kinase; s 75.7 1.2 4.2E-05 44.1 2.5 22 61-82 6-27 (218)
389 1e6c_A Shikimate kinase; phosp 75.6 1.4 4.8E-05 41.6 2.8 22 60-81 3-24 (173)
390 2c95_A Adenylate kinase 1; tra 75.6 1.4 4.9E-05 42.3 2.9 23 59-81 9-31 (196)
391 3dl0_A Adenylate kinase; phosp 75.2 1.4 4.9E-05 43.5 2.9 25 61-85 2-27 (216)
392 1tev_A UMP-CMP kinase; ploop, 75.0 1.5 5E-05 42.0 2.8 21 61-81 5-25 (196)
393 2pt5_A Shikimate kinase, SK; a 75.0 1.5 5.2E-05 41.2 2.8 21 61-81 2-22 (168)
394 2w58_A DNAI, primosome compone 74.3 4.2 0.00014 39.5 5.9 42 41-82 36-77 (202)
395 2vli_A Antibiotic resistance p 74.2 1.3 4.3E-05 42.3 2.1 22 60-81 6-27 (183)
396 1qf9_A UMP/CMP kinase, protein 74.2 1.5 5.1E-05 41.9 2.6 22 60-81 7-28 (194)
397 1zuh_A Shikimate kinase; alpha 74.1 1.8 6E-05 41.0 3.1 24 58-81 6-29 (168)
398 3thx_A DNA mismatch repair pro 74.1 10 0.00034 46.8 10.4 26 61-86 664-697 (934)
399 2chg_A Replication factor C sm 73.8 3.9 0.00013 39.3 5.5 25 58-82 37-61 (226)
400 3j16_B RLI1P; ribosome recycli 73.7 1.8 6.1E-05 50.8 3.6 25 62-86 381-405 (608)
401 2x8a_A Nuclear valosin-contain 73.5 1.4 4.8E-05 46.1 2.4 21 62-82 47-67 (274)
402 3ake_A Cytidylate kinase; CMP 73.4 1.7 5.7E-05 42.3 2.8 22 60-81 3-24 (208)
403 1cr0_A DNA primase/helicase; R 72.9 1.4 4.7E-05 46.1 2.2 25 61-85 37-61 (296)
404 1jbk_A CLPB protein; beta barr 72.9 2 6.9E-05 40.2 3.2 24 59-82 43-66 (195)
405 2bwj_A Adenylate kinase 5; pho 72.8 1.9 6.4E-05 41.6 2.9 22 60-81 13-34 (199)
406 1ukz_A Uridylate kinase; trans 72.7 1.8 6.2E-05 42.2 2.9 21 60-80 16-36 (203)
407 1uf9_A TT1252 protein; P-loop, 72.6 1.7 5.8E-05 42.1 2.6 23 60-82 9-31 (203)
408 2cdn_A Adenylate kinase; phosp 72.5 1.8 6.2E-05 42.3 2.8 21 61-81 22-42 (201)
409 1puj_A YLQF, conserved hypothe 72.5 4.4 0.00015 42.6 6.0 53 191-247 12-64 (282)
410 3nwj_A ATSK2; P loop, shikimat 72.1 1.6 5.5E-05 45.3 2.4 23 59-81 48-70 (250)
411 1m7g_A Adenylylsulfate kinase; 71.9 1.7 5.7E-05 43.1 2.4 23 60-82 26-48 (211)
412 1zd8_A GTP:AMP phosphotransfer 71.9 1.8 6E-05 43.4 2.6 21 60-80 8-28 (227)
413 1zak_A Adenylate kinase; ATP:A 71.7 1.8 6.2E-05 43.1 2.6 22 60-81 6-27 (222)
414 1q3t_A Cytidylate kinase; nucl 71.4 2.1 7E-05 43.3 3.0 23 59-81 16-38 (236)
415 3a4m_A L-seryl-tRNA(SEC) kinas 70.8 2.2 7.7E-05 43.9 3.2 23 59-81 4-26 (260)
416 1sxj_E Activator 1 40 kDa subu 70.7 1.7 5.8E-05 46.2 2.3 25 58-82 35-59 (354)
417 1svm_A Large T antigen; AAA+ f 70.1 1.8 6.2E-05 47.7 2.4 26 57-82 166-192 (377)
418 2iw3_A Elongation factor 3A; a 70.1 1.6 5.6E-05 53.9 2.2 25 61-85 701-725 (986)
419 1e4v_A Adenylate kinase; trans 69.8 2.1 7.2E-05 42.4 2.6 21 61-81 2-22 (214)
420 1fnn_A CDC6P, cell division co 69.6 5.3 0.00018 42.6 5.9 26 58-83 43-68 (389)
421 3upu_A ATP-dependent DNA helic 69.2 3.8 0.00013 45.8 4.9 49 24-82 19-68 (459)
422 1n0w_A DNA repair protein RAD5 69.1 2.1 7E-05 42.7 2.4 22 61-82 26-47 (243)
423 2cvh_A DNA repair and recombin 69.0 2.1 7.2E-05 41.9 2.4 21 61-81 22-42 (220)
424 2xb4_A Adenylate kinase; ATP-b 69.0 2.4 8.2E-05 42.5 2.8 21 61-81 2-22 (223)
425 3r20_A Cytidylate kinase; stru 69.0 2.4 8.3E-05 43.6 2.9 25 61-85 11-38 (233)
426 1aky_A Adenylate kinase; ATP:A 68.8 2.4 8.3E-05 42.0 2.8 22 60-81 5-26 (220)
427 2ze6_A Isopentenyl transferase 68.8 2.1 7.1E-05 44.1 2.4 21 61-81 3-23 (253)
428 1lv7_A FTSH; alpha/beta domain 68.5 2.4 8.2E-05 43.1 2.8 22 61-82 47-68 (257)
429 4f4c_A Multidrug resistance pr 67.8 2.5 8.4E-05 54.0 3.2 26 61-86 1107-1132(1321)
430 4eaq_A DTMP kinase, thymidylat 66.5 2.9 9.8E-05 42.5 2.8 22 61-82 28-49 (229)
431 1njg_A DNA polymerase III subu 66.3 5.8 0.0002 38.3 5.0 23 60-82 46-68 (250)
432 2p65_A Hypothetical protein PF 65.9 2.8 9.6E-05 39.3 2.5 24 59-82 43-66 (187)
433 4f4c_A Multidrug resistance pr 65.8 2.7 9.4E-05 53.6 3.1 26 61-86 446-471 (1321)
434 1ltq_A Polynucleotide kinase; 65.5 3 0.0001 43.4 2.8 21 61-81 4-24 (301)
435 3tlx_A Adenylate kinase 2; str 65.5 3 0.0001 42.5 2.8 23 59-81 29-51 (243)
436 3be4_A Adenylate kinase; malar 65.4 2.9 0.0001 41.6 2.6 22 60-81 6-27 (217)
437 1ak2_A Adenylate kinase isoenz 64.8 3.2 0.00011 41.7 2.8 22 60-81 17-38 (233)
438 1uj2_A Uridine-cytidine kinase 64.4 3.3 0.00011 42.2 2.9 26 60-85 23-49 (252)
439 3exa_A TRNA delta(2)-isopenten 64.2 4 0.00014 44.1 3.5 22 60-81 4-25 (322)
440 3cr8_A Sulfate adenylyltranfer 64.0 2.1 7.2E-05 49.6 1.4 25 61-85 371-395 (552)
441 1sxj_D Activator 1 41 kDa subu 63.8 3.1 0.00011 43.8 2.6 25 58-82 57-81 (353)
442 3m6a_A ATP-dependent protease 63.6 6.8 0.00023 45.1 5.6 46 37-83 87-132 (543)
443 2grj_A Dephospho-COA kinase; T 63.4 3.6 0.00012 40.7 2.9 25 58-82 11-35 (192)
444 2dpy_A FLII, flagellum-specifi 63.4 2.7 9.3E-05 47.2 2.1 25 61-85 159-183 (438)
445 2f6r_A COA synthase, bifunctio 63.0 3.3 0.00011 43.3 2.6 21 61-81 77-97 (281)
446 3uk6_A RUVB-like 2; hexameric 62.6 8.8 0.0003 40.8 5.9 46 35-82 48-93 (368)
447 1nlf_A Regulatory protein REPA 62.3 3.1 0.0001 43.1 2.2 21 61-81 32-52 (279)
448 3g5u_A MCG1178, multidrug resi 61.9 3.5 0.00012 52.5 3.0 25 61-85 418-442 (1284)
449 2obl_A ESCN; ATPase, hydrolase 61.8 3.1 0.00011 45.3 2.1 25 61-85 73-97 (347)
450 1l8q_A Chromosomal replication 61.3 6.6 0.00022 41.3 4.6 38 43-82 23-60 (324)
451 2fna_A Conserved hypothetical 61.3 6.6 0.00023 41.0 4.6 23 60-82 31-53 (357)
452 3thx_B DNA mismatch repair pro 61.2 8.1 0.00028 47.5 5.9 25 61-85 675-699 (918)
453 3n70_A Transport activator; si 60.0 8.8 0.0003 35.5 4.7 21 62-82 27-47 (145)
454 3foz_A TRNA delta(2)-isopenten 59.3 6.5 0.00022 42.4 4.1 23 59-81 10-32 (316)
455 3g5u_A MCG1178, multidrug resi 59.2 4.5 0.00015 51.5 3.3 25 61-85 1061-1085(1284)
456 3pfi_A Holliday junction ATP-d 59.0 8.9 0.00031 40.3 5.1 25 58-82 54-78 (338)
457 2r62_A Cell division protease 58.7 7.4 0.00025 39.5 4.3 48 34-82 18-67 (268)
458 1a7j_A Phosphoribulokinase; tr 58.4 3.9 0.00013 43.1 2.1 23 59-81 5-27 (290)
459 1p5z_B DCK, deoxycytidine kina 58.2 3.6 0.00012 42.2 1.8 24 59-82 24-47 (263)
460 3zvl_A Bifunctional polynucleo 58.1 4.6 0.00016 44.7 2.8 22 60-81 259-280 (416)
461 2ocp_A DGK, deoxyguanosine kin 57.8 4.7 0.00016 40.6 2.6 21 61-81 4-24 (241)
462 2ce7_A Cell division protein F 57.6 9.1 0.00031 43.5 5.1 47 35-82 24-72 (476)
463 2iw3_A Elongation factor 3A; a 57.5 4.1 0.00014 50.4 2.4 22 61-82 463-484 (986)
464 2ius_A DNA translocase FTSK; n 57.3 4.5 0.00016 46.4 2.6 24 58-81 166-189 (512)
465 2ga8_A Hypothetical 39.9 kDa p 57.0 4.9 0.00017 44.1 2.7 25 58-82 23-47 (359)
466 2wsm_A Hydrogenase expression/ 56.1 7.4 0.00025 38.1 3.6 60 165-246 108-167 (221)
467 1bif_A 6-phosphofructo-2-kinas 56.0 5.3 0.00018 44.9 2.8 22 61-82 41-62 (469)
468 3ux8_A Excinuclease ABC, A sub 55.9 3.8 0.00013 48.3 1.7 20 61-80 350-369 (670)
469 1tue_A Replication protein E1; 55.2 11 0.00037 38.4 4.7 38 39-82 41-81 (212)
470 2qby_A CDC6 homolog 1, cell di 55.2 4.7 0.00016 42.7 2.1 24 59-82 45-68 (386)
471 4ad8_A DNA repair protein RECN 54.9 3.2 0.00011 47.3 0.8 26 57-82 58-83 (517)
472 2h92_A Cytidylate kinase; ross 54.5 6.3 0.00022 38.7 2.8 21 61-81 5-25 (219)
473 3b9p_A CG5977-PA, isoform A; A 54.1 5.5 0.00019 41.2 2.4 24 59-82 54-77 (297)
474 4edh_A DTMP kinase, thymidylat 53.7 6.6 0.00023 39.5 2.9 21 61-81 8-28 (213)
475 1sxj_B Activator 1 37 kDa subu 53.6 14 0.0005 37.9 5.6 25 58-82 41-65 (323)
476 3a8t_A Adenylate isopentenyltr 53.5 9.2 0.00031 41.6 4.1 23 60-82 41-63 (339)
477 2v1u_A Cell division control p 53.5 10 0.00035 40.1 4.5 25 58-82 43-67 (387)
478 3h4m_A Proteasome-activating n 53.3 6.6 0.00023 40.2 2.9 24 59-82 51-74 (285)
479 2qz4_A Paraplegin; AAA+, SPG7, 52.7 6.9 0.00024 39.3 2.8 22 60-81 40-61 (262)
480 2qen_A Walker-type ATPase; unk 52.7 7.5 0.00026 40.5 3.2 22 60-81 32-53 (350)
481 3d3q_A TRNA delta(2)-isopenten 52.2 6.9 0.00024 42.6 2.9 22 60-81 8-29 (340)
482 4fcw_A Chaperone protein CLPB; 52.2 18 0.0006 37.4 5.9 24 61-84 49-72 (311)
483 4ag6_A VIRB4 ATPase, type IV s 52.1 5.8 0.0002 43.2 2.3 28 58-85 34-61 (392)
484 1iqp_A RFCS; clamp loader, ext 51.7 14 0.00049 38.0 5.2 25 58-82 45-69 (327)
485 2dhr_A FTSH; AAA+ protein, hex 51.6 7.2 0.00025 44.6 3.0 22 61-82 66-87 (499)
486 2dr3_A UPF0273 protein PH0284; 51.4 7 0.00024 38.7 2.6 21 61-81 25-45 (247)
487 3ux8_A Excinuclease ABC, A sub 51.3 6 0.00021 46.6 2.4 16 61-76 46-61 (670)
488 3v9p_A DTMP kinase, thymidylat 51.0 6.5 0.00022 40.1 2.3 23 60-82 26-48 (227)
489 2qby_B CDC6 homolog 3, cell di 50.7 14 0.00049 39.2 5.1 24 59-82 45-68 (384)
490 1t9h_A YLOQ, probable GTPase E 50.5 19 0.00064 38.5 5.9 50 198-248 82-132 (307)
491 3ea0_A ATPase, para family; al 50.3 16 0.00054 36.3 5.1 66 166-246 119-185 (245)
492 3t15_A Ribulose bisphosphate c 50.2 7.8 0.00027 40.6 2.8 26 56-81 32-58 (293)
493 3syl_A Protein CBBX; photosynt 50.1 10 0.00036 39.1 3.8 25 58-82 66-90 (309)
494 3lv8_A DTMP kinase, thymidylat 50.0 7.6 0.00026 39.9 2.6 22 61-82 29-50 (236)
495 3ld9_A DTMP kinase, thymidylat 49.9 8.2 0.00028 39.3 2.9 22 61-82 23-44 (223)
496 1c9k_A COBU, adenosylcobinamid 49.9 7.8 0.00027 38.3 2.6 21 62-82 2-22 (180)
497 2qmh_A HPR kinase/phosphorylas 49.7 8.8 0.0003 38.8 3.0 23 60-82 35-57 (205)
498 3sr0_A Adenylate kinase; phosp 49.0 8.8 0.0003 38.4 2.9 21 61-81 2-22 (206)
499 4tmk_A Protein (thymidylate ki 49.0 8.1 0.00028 38.9 2.6 22 61-82 5-26 (213)
500 1d2n_A N-ethylmaleimide-sensit 48.9 19 0.00065 36.7 5.5 25 58-82 63-87 (272)
No 1
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=2.4e-50 Score=473.78 Aligned_cols=483 Identities=18% Similarity=0.221 Sum_probs=352.1
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCcccc
Q 003415 35 TRASRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRF 114 (822)
Q Consensus 35 ~~~~Lld~id~Lr~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i 114 (822)
..+.+++.+|+|+++|+ +..+++|+|+|||++||||||||++|+|..+| +++|.||++|+.+++.+.+....++..+
T Consensus 23 ~~r~ll~~id~l~~~gv--~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i 99 (608)
T 3szr_A 23 KVRPCIDLIDSLRALGV--EQDLALPAIAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKV 99 (608)
T ss_dssp HHHHHHHHHHHHHHHSC--CSSCCCCCEECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEE
T ss_pred HHHHHHHHHHHHHhCCC--CCcccCCeEEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEE
Confidence 45789999999999987 78999999999999999999999999999666 6679999999999888866444444433
Q ss_pred ccCCccccCCcccchhhHHHHHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHH
Q 003415 115 QEEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILS 194 (822)
Q Consensus 115 ~~~~~~ef~~~~~~~~~l~~~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~ 194 (822)
.--. ....+.+...+.+.|..+...+ +..+.+++.+++.+.+.+|+.|+|+|+|+||+...++.+++......+.+
T Consensus 100 ~~v~---Q~~~l~~~~tv~e~i~~~~~~~-~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~ 175 (608)
T 3szr_A 100 SYQD---YEIEISDASEVEKEINKAQNAI-AGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKT 175 (608)
T ss_dssp SCC------CCCCCHHHHHTTHHHHHHHH-HCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHH
T ss_pred eeec---ccccCCCHHHHHHHHHHHHHHh-cCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHH
Confidence 2100 0012345566777777665443 34566899999999999999999999999999999998999999999999
Q ss_pred HHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCccccccccHHHHHHHhhhcCCcCCCCCCcE
Q 003415 195 MVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRWEVDRYLSASGYLGENTRPFF 274 (822)
Q Consensus 195 LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~~~~s~~~~v~~~l~~~G~l~~~~~gw~ 274 (822)
|+++|++++++|||++++++.|++++.++++++++||.|.|||||+||+|++.++....+ + .++. |-+....+|||
T Consensus 176 li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~-~-~~l~--~~~~~l~~g~~ 251 (608)
T 3szr_A 176 LIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKV-V-DVVR--NLVFHLKKGYM 251 (608)
T ss_dssp HHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCC-C-CCC----CCSCCSSCEE
T ss_pred HHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHH-H-HHHh--CcccccCceEE
Confidence 999999999999999999999999999999999999999999999999999754332211 1 1111 32334567899
Q ss_pred EeecCCCCCCCcHHHHhhhhHhhHHHHHHhhhhhcCCCCccCcCCccChhHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Q 003415 275 VALPKDRNTVSNDEFRRQISQVDVEVLRHLRDGIKGGYDEEKFKPYIGFGCLRDYLESELQKRYKEAAPATLALLEQRCN 354 (822)
Q Consensus 275 v~~p~~R~~~s~~e~r~~~~q~D~~e~~~~~~~~~~~f~e~~~~~r~Gi~~Lr~~Ls~lL~~~I~~~LP~l~~~I~~~l~ 354 (822)
+++ ||+..... -..++.++...|.+||....| |..-...+++||.+|+++|+++|.+||+++||.|+.+|++.+.
T Consensus 252 ~v~--nr~~~~~~-~~~~~~~~~~~E~~fF~~~~~--~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~ 326 (608)
T 3szr_A 252 IVK--CRGQQEIQ-DQLSLSEALQREKIFFENHPY--FRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQ 326 (608)
T ss_dssp CCC--CSCTTCTT-TCCCHHHHTTTHHHHTTTCTT--TSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEe--cCchhhcc-cCCCHHHHHHHHHHHHccCcc--ccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 994 55432100 011223344456677765432 2211124589999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccCcchhhhhhccCCCCCCcccccccCCch
Q 003415 355 EVTTEMSRMDSKIQATSDVAQLRRFAMMYAASISTHVGALIDGAADPAPEQWGKSTEEEQSESGIGSWPGVSIDIKPPNA 434 (822)
Q Consensus 355 ~~~~eL~~LG~~~~t~sd~~e~R~~L~~~~~~F~~~v~~al~G~y~~~~~fFG~t~~eer~~~g~~~~~rlra~i~~~N~ 434 (822)
+++.||.+||+++.+ ++.+++.||++++..|++.++++++|.+.. ++.. .++.+.
T Consensus 327 ~~~~el~~lg~~~~~--~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~----~~~~-------------~~~~~~------ 381 (608)
T 3szr_A 327 RITEELQKYGVDIPE--DENEKMFFLIDKVNAFNQDITALMQGEETV----GEED-------------IRLFTR------ 381 (608)
T ss_dssp HHHHHHHTSCCCCCC--SHHHHHHHHHHHHHHHHHHHHHHHSSCCCC----CTTC-------------CCHHHH------
T ss_pred HHHHHHHHcCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHhCCCCcC----CCcc-------------ccHHHH------
Confidence 999999999998765 478999999999999999999999999852 1110 011111
Q ss_pred hhhhccCcchhhhhhhhhhhcccC--CCCccCHHHHHHHHHhhcCCCCCCC-cHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 003415 435 TLRLYGGAAFERVMHEFRCAAYSI--ECPQVSREKVANILLAHAGRGGGRG-VMEAAAEIARAAARSWFAPLLDTACDRL 511 (822)
Q Consensus 435 ~mrl~Ggaqfer~l~Ef~~~~~~~--~~P~vsreeV~~~l~~srG~ELPG~-np~aa~~LfreQS~~W~~pla~~h~~rv 511 (822)
+.+.+..|....... .+-....+||..++..++|+++||+ ++.+...|+++|++.|.+| +..+++.|
T Consensus 382 ---------~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~f~~~~~fe~lvk~qi~~l~~P-a~~~v~~V 451 (608)
T 3szr_A 382 ---------LRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAELPGFVNYRTFETIVKQQIKALEEP-AVDMLHTV 451 (608)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSSCSSCTHHHHHHHHHHHGGGHHH-HHHHHHHH
T ss_pred ---------HHHHHHHHHHHhhhcccccchhHHHHHHHHHHHccCCCCCCCccHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 111111111100000 0012346799999999999999999 7899999999999999955 56788888
Q ss_pred HHHHHHHHHHHHHhhccCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHccccccCCCCCC
Q 003415 512 AFVLGNLFDIALERHCNQDSEYGNKTGNMDGYVSFHASLRQAYNRFVKDLSKQCKQLVRHHLDSVTSPYS 581 (822)
Q Consensus 512 ~~i~~rfv~~al~~i~~~d~~~~~~~~~l~~~~~~~~~L~~~~~~fv~ele~~ck~k~~~~Les~trpyt 581 (822)
+..++..+..+.... +..||.|..++++....++++.++.|++.++..++.....|+
T Consensus 452 ~~~v~~~~~~~~~~~-------------f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i~~li~mE~~~~~ 508 (608)
T 3szr_A 452 TDMVRLAFTDVSIKN-------------FEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQIVYG 508 (608)
T ss_dssp HHHHHHHHHHHHHHH-------------HSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHH-------------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 888887776654321 234899999999999999999999999988888776665554
No 2
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=3.3e-49 Score=469.75 Aligned_cols=492 Identities=21% Similarity=0.273 Sum_probs=368.9
Q ss_pred ccCcchhhhHHHHHHHHHHHHHhcC--CCCCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCC
Q 003415 30 TDSASTRASRFEAYNRLQAAAVAFG--EKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTA 107 (822)
Q Consensus 30 ~l~s~~~~~Lld~id~Lr~~g~~~~--~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~ 107 (822)
...+.+.++|++.||+|++....+| ..+++|+|+|||+||+|||||||+|+|.+|.|++.++|||+|+++++++++..
T Consensus 20 ~~~~~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~ 99 (772)
T 3zvr_A 20 HMGNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTE 99 (772)
T ss_dssp -----CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSC
T ss_pred ccccccHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcc
Confidence 3556677899999999988555444 56999999999999999999999999999977999999999999999997642
Q ss_pred CCCccccccCCccccCCcccchhhHHHHHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCC
Q 003415 108 LDPRCRFQEEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPEN 187 (822)
Q Consensus 108 ~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~ 187 (822)
+.+.+. ..+..+.+++++.+.|+.++... ...+.+|+.++|.++|.+|++++|+||||||++..+..+++.+
T Consensus 100 --~~~~l~-----~~~~~~~~~~~v~~~I~~~~~~~-~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~d 171 (772)
T 3zvr_A 100 --YAEFLH-----CKGKKFTDFEEVRLEIEAETDRV-TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPD 171 (772)
T ss_dssp --EEECST-----TTTCCBCCHHHHHHHHHHHHHHH-HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCH
T ss_pred --hhheec-----cCCcccCCHHHHHHHHHHHHhhh-cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHH
Confidence 322221 12334567888988888777654 3356789999999999999999999999999999887778877
Q ss_pred chHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCccccccccHHHHHHHhhhcCCcC
Q 003415 188 TPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRWEVDRYLSASGYLG 267 (822)
Q Consensus 188 ~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~~~~s~~~~v~~~l~~~G~l~ 267 (822)
..+.+.+++..|+.++..|||+|++|+.++..++.+.+++.+++.+.++|+|+||+|++.++. .... .+. +.+.
T Consensus 172 i~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~-~~~~---il~--~~~~ 245 (772)
T 3zvr_A 172 IEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGT-DARD---VLE--NKLL 245 (772)
T ss_dssp HHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTC-CSHH---HHT--TCSS
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcch-hhHH---HHH--HHhh
Confidence 788999999999999999999999999999999988999999999999999999999964432 2111 111 1111
Q ss_pred CCCCCcEEeecCCCC-CCCcHHHHhhhhHhhHHHHHHhhhhhcCCCCccCcCCccChhHHHHHHHHHHHHHHHHhchHHH
Q 003415 268 ENTRPFFVALPKDRN-TVSNDEFRRQISQVDVEVLRHLRDGIKGGYDEEKFKPYIGFGCLRDYLESELQKRYKEAAPATL 346 (822)
Q Consensus 268 ~~~~gw~v~~p~~R~-~~s~~e~r~~~~q~D~~e~~~~~~~~~~~f~e~~~~~r~Gi~~Lr~~Ls~lL~~~I~~~LP~l~ 346 (822)
....||+.++|..-. ...-+++.+.+ ..+.++|.++. .|+ .+.+++|+..|.+.|.+.|..||+++||.|+
T Consensus 246 ~l~lg~~~VV~iSA~~G~GvdeL~eaI----~~e~~ffpe~P--~yd--~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~ 317 (772)
T 3zvr_A 246 PLRRGYIGVVNRSQKDIDGKKDITAAL----AAERKFFLSHP--SYR--HLADRMGTPYLQKVLNQQLTNHIRDTLPGLR 317 (772)
T ss_dssp CCSSCEEECCCCCCEESSSSEEHHHHH----HHHHHHHHHCT--TTG--GGGGGCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCceEEecccccccchhHHHHH----HHHHHhccCCc--chh--hhhhcccHHHHHHHHHHHHHHHHHhhCccHH
Confidence 223478777653210 11112232222 12334665432 232 4578999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccCcchhhhhhccCCCCCCccc
Q 003415 347 ALLEQRCNEVTTEMSRMDSKIQATSDVAQLRRFAMMYAASISTHVGALIDGAADPAPEQWGKSTEEEQSESGIGSWPGVS 426 (822)
Q Consensus 347 ~~I~~~l~~~~~eL~~LG~~~~t~sd~~e~R~~L~~~~~~F~~~v~~al~G~y~~~~~fFG~t~~eer~~~g~~~~~rlr 426 (822)
.+|++++..++.+|+++|+.+.+ ++.++..+|++++..|++.+.++|+|.|....
T Consensus 318 ~~I~~~l~s~~vele~~~~~~~~--~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~----------------------- 372 (772)
T 3zvr_A 318 NKLQSQLLSIEKEVDEYKNFRPD--DPARKTKALLQMVQQFAVDFEKRIEGSGDQID----------------------- 372 (772)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCC--SSSCSHHHHHHHHHHHHHHHHHHHTC-----------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHHHHHHHHHhCCCCCCcC-----------------------
Confidence 99999999999999999988765 34556678999999999999999999997210
Q ss_pred ccccCCchhhhhccCcchhhhhhh-hhhhcccCCCC-ccCHHHHHHHHHhhcCCCCCCC-cHHHHHH-HHHHHHhcchHH
Q 003415 427 IDIKPPNATLRLYGGAAFERVMHE-FRCAAYSIECP-QVSREKVANILLAHAGRGGGRG-VMEAAAE-IARAAARSWFAP 502 (822)
Q Consensus 427 a~i~~~N~~mrl~Ggaqfer~l~E-f~~~~~~~~~P-~vsreeV~~~l~~srG~ELPG~-np~aa~~-LfreQS~~W~~p 502 (822)
+..+.||+.+.+.++| |......++.. ..+.+||..+++.++|.+ ||. +|..+.+ |+++|+++|. .
T Consensus 373 --------~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~n~~G~~-~~lf~p~~~fe~LVk~QI~rl~-e 442 (772)
T 3zvr_A 373 --------TYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIR-TGLFTPDLAFEATVKKQVQKLK-E 442 (772)
T ss_dssp -----------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHTTH-H
T ss_pred --------cccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHHHhCCCCC-CCCCChHHHHHHHHHHHHHHHH-H
Confidence 2257788877666655 33333344444 567789999999999999 887 8876666 9999999999 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHccccccCCCCCCC
Q 003415 503 LLDTACDRLAFVLGNLFDIALERHCNQDSEYGNKTGNMDGYVSFHASLRQAYNRFVKDLSKQCKQLVRHHLDSVTSPYSL 582 (822)
Q Consensus 503 la~~h~~rv~~i~~rfv~~al~~i~~~d~~~~~~~~~l~~~~~~~~~L~~~~~~fv~ele~~ck~k~~~~Les~trpyt~ 582 (822)
.+..+++.|+..+.+++..+..+ +..||.|..++.++...++++.+..|++.+. .|.-....|-.
T Consensus 443 Psl~CVdlV~~eL~~iv~~~~~~--------------l~RfP~Lr~ei~~iv~~~Lre~~~~t~~~V~-~LId~E~ayin 507 (772)
T 3zvr_A 443 PSIKCVDMVVSELTSTIRKCSEK--------------LQQYPRLREEMERIVTTHIREREGRTKEQVM-LLIDIELAYMN 507 (772)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGG--------------GTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------hcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCC
Confidence 56789999999888888775321 3458999999999999999999999999888 44445555666
Q ss_pred cccccccccCCC
Q 003415 583 VCYENDFQGGFG 594 (822)
Q Consensus 583 ~~~~n~~~~~~~ 594 (822)
..|++ |+++..
T Consensus 508 tnHpd-f~~~~~ 518 (772)
T 3zvr_A 508 TNHED-FIGFAN 518 (772)
T ss_dssp TTCTT-CCCC--
T ss_pred CCChh-hhchHH
Confidence 66665 777655
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=1.2e-38 Score=351.06 Aligned_cols=313 Identities=25% Similarity=0.342 Sum_probs=237.0
Q ss_pred hhHHHHHHHHHHHHHhcCC----------CCCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCC
Q 003415 37 ASRFEAYNRLQAAAVAFGE----------KLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPT 106 (822)
Q Consensus 37 ~~Lld~id~Lr~~g~~~~~----------~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~ 106 (822)
..|...+|+|+.+...++. .+++|+|+|||+||||||||||+|+|.+|+|++.++|||+|+++++++.+.
T Consensus 2 ~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~ 81 (360)
T 3t34_A 2 ENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDD 81 (360)
T ss_dssp CCHHHHHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSS
T ss_pred hhHHHHHHHHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCC
Confidence 3588899999998766653 269999999999999999999999999998899999999999999998766
Q ss_pred CCCCccccccCCccccCCcccchhhHHHHHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCC
Q 003415 107 ALDPRCRFQEEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPE 186 (822)
Q Consensus 107 ~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~ 186 (822)
...+...+... .+..+.+++.+.+.|..++.... ..+.+|+.+++.++|.+|+.++|+||||||+......+|+.
T Consensus 82 ~~~~~~~~~~~----~~~~~~~~~~v~~~i~~~~~~~~-g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~ 156 (360)
T 3t34_A 82 GTREYAEFLHL----PRKKFTDFAAVRKEIQDETDRET-GRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSD 156 (360)
T ss_dssp CSCCEEEETTS----TTCCBSCHHHHHHHHHHHHHHTS-CTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCS
T ss_pred cccceeeeecC----CCcccCCHHHHHHHHHHHHHHhc-CCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCch
Confidence 43333333221 12345667788887776655432 34568999999999999999999999999999988878888
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCccccccccHHHHHHHhhhcCCc
Q 003415 187 NTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRWEVDRYLSASGYL 266 (822)
Q Consensus 187 ~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~~~~s~~~~v~~~l~~~G~l 266 (822)
.....+..++..|+.++++|||+|.+++.++.+++++.+++++++.+.+||+|+||+|++.++. ... ..+. ++.
T Consensus 157 ~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~-~~~---~~~~--~~~ 230 (360)
T 3t34_A 157 SIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGT-DAV---EILE--GRS 230 (360)
T ss_dssp SHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTC-CSH---HHHT--TSS
T ss_pred hHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcc-cHH---HHHc--Ccc
Confidence 8999999999999999999999998999999999999999999999999999999999964432 211 1222 222
Q ss_pred CCCCCCcEEeecCCCCCCCcHHHHhhh--hHhhHHHHHHhhhhhcCCCCccCcCCccChhHHHHHHHHHHHHHHHHhchH
Q 003415 267 GENTRPFFVALPKDRNTVSNDEFRRQI--SQVDVEVLRHLRDGIKGGYDEEKFKPYIGFGCLRDYLESELQKRYKEAAPA 344 (822)
Q Consensus 267 ~~~~~gw~v~~p~~R~~~s~~e~r~~~--~q~D~~e~~~~~~~~~~~f~e~~~~~r~Gi~~Lr~~Ls~lL~~~I~~~LP~ 344 (822)
.....|||.+.+ ++ ..+..+.. .++...+..||.... .|. .+..++|+.+|+.+|+++|.+||+++||.
T Consensus 231 ~~~~~~~~~v~~--~s---~~~i~~~~~~~~~~~~e~~ff~~~~--~~~--~~~~~~g~~~L~~~l~~~l~~~i~~~lp~ 301 (360)
T 3t34_A 231 FKLKYPWVGVVN--RS---QADINKNVDMIAARKREREYFSNTT--EYR--HLANKMGSEHLAKMLSKHLERVIKSRIPG 301 (360)
T ss_dssp SCCSSCCEEECC--CC---HHHHHTTCCHHHHHHHHHHHHTTCT--TTG--GGGGGCSHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccccCCeEEEEE--CC---hHHhccCCCHHHHHHHHHHHhcCCC--ccc--cchhhcCHHHHHHHHHHHHHHHHHHHhHH
Confidence 233568998844 33 22222211 123334556776431 122 23568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccc
Q 003415 345 TLALLEQRCNEVTTEMSRMDSKIQA 369 (822)
Q Consensus 345 l~~~I~~~l~~~~~eL~~LG~~~~t 369 (822)
|+.+|+.++.+++++|.+||+++.+
T Consensus 302 l~~~i~~~l~~~~~~l~~lg~~~~~ 326 (360)
T 3t34_A 302 IQSLINKTVLELETELSRLGKPIAH 326 (360)
T ss_dssp HHHHHHHHHTTTTCC----------
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999875
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=4.8e-36 Score=329.99 Aligned_cols=336 Identities=22% Similarity=0.294 Sum_probs=251.7
Q ss_pred hhHHHHHHHHHHHHHhc--CCCCCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCcccc
Q 003415 37 ASRFEAYNRLQAAAVAF--GEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRF 114 (822)
Q Consensus 37 ~~Lld~id~Lr~~g~~~--~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i 114 (822)
.+|++.+|+|++.-..+ +..+++|+|+|||+||+|||||||+|+|.+|.|++.++|||+|+++++.+.+. .|.+.+
T Consensus 7 ~~l~~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~--~~~~~~ 84 (353)
T 2x2e_A 7 EDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATT--EYAEFL 84 (353)
T ss_dssp CSCHHHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSS--CEEEET
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCc--cceeee
Confidence 45677777777643322 45789999999999999999999999999997788899999999999998754 344443
Q ss_pred ccCCccccCCcccchhhHHHHHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHH
Q 003415 115 QEEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILS 194 (822)
Q Consensus 115 ~~~~~~ef~~~~~~~~~l~~~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~ 194 (822)
.. .+..+++++.+...|+.++..+. ..+.+|+.+++.++|.+|+.++|+||||||+...+..+|+.+..+.+++
T Consensus 85 ~~-----~~~~~tt~~~v~~~i~~~~~~i~-g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~ 158 (353)
T 2x2e_A 85 HC-----KGKKFTDFEEVRLEIEAETDRVT-GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRD 158 (353)
T ss_dssp TS-----TTCCBCCHHHHHHHHHHHHHHHH-TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHH
T ss_pred ec-----CCcccCCHHHHHHHHHHHHHHhc-ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHH
Confidence 21 22334667778888877665542 3346899999999999999999999999999998877888888889999
Q ss_pred HHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCccccccccHHHHHHHhhhcCCcCCCCCCcE
Q 003415 195 MVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRWEVDRYLSASGYLGENTRPFF 274 (822)
Q Consensus 195 LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~~~~s~~~~v~~~l~~~G~l~~~~~gw~ 274 (822)
++..|+.+++++||+|++++.++.+++++.+++.+++.+.|+|+|+||+|+..++ .+.. .++. +.......+|+
T Consensus 159 ~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~-~~~~---~~~~--~~~~~l~~~~~ 232 (353)
T 2x2e_A 159 MLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEG-TDAR---DVLE--NKLLPLRRGYI 232 (353)
T ss_dssp HHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTT-CCCH---HHHT--TCSSCCTTCEE
T ss_pred HHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcc-hhHH---HHHh--CCcccccCCce
Confidence 9999999999999999999999999998899999999999999999999996433 2211 1222 11112234677
Q ss_pred EeecCCCCCCCcHHHHhhhhHhhHHHHHHhhhhhcCCCCccCcCCccChhHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Q 003415 275 VALPKDRNTVSNDEFRRQISQVDVEVLRHLRDGIKGGYDEEKFKPYIGFGCLRDYLESELQKRYKEAAPATLALLEQRCN 354 (822)
Q Consensus 275 v~~p~~R~~~s~~e~r~~~~q~D~~e~~~~~~~~~~~f~e~~~~~r~Gi~~Lr~~Ls~lL~~~I~~~LP~l~~~I~~~l~ 354 (822)
.+++ ++..+.... ..+.+.-..+..+|... ..|. ....++|+..|++.|.+.|..||+++||.++.+|++++.
T Consensus 233 ~v~~--~SA~~~~~i-~~l~~~l~~e~~~f~~~--~~~~--~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~ 305 (353)
T 2x2e_A 233 GVVN--RSQKDIDGK-KDITAALAAERKFFLSH--PSYR--HLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLL 305 (353)
T ss_dssp ECCC--CCHHHHHTT-CCHHHHHHHHHHHHHHC--TTTG--GGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEe--CCccccccc-ccHHHHHHHHHHHhccC--Cccc--ccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6644 221100000 00111111233444321 1222 235789999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 003415 355 EVTTEMSRMDSKIQATSDVAQLRRFAMMYAASISTHVGA 393 (822)
Q Consensus 355 ~~~~eL~~LG~~~~t~sd~~e~R~~L~~~~~~F~~~v~~ 393 (822)
.++.+|++||+.+.+......+|.+|++++.+|++.++.
T Consensus 306 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 344 (353)
T 2x2e_A 306 SIEKEVEEYKNFRPDKHGTDSRVDEMLRMYHALKEALSI 344 (353)
T ss_dssp HHHHHHHHHHHHCCCSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCchhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999988765311123458999999999999863
No 5
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.97 E-value=2.3e-29 Score=270.03 Aligned_cols=306 Identities=26% Similarity=0.344 Sum_probs=197.4
Q ss_pred hHHHHHHHHHHHHHhcCC-CCCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCC-----Cc
Q 003415 38 SRFEAYNRLQAAAVAFGE-KLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALD-----PR 111 (822)
Q Consensus 38 ~Lld~id~Lr~~g~~~~~-~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~-----~~ 111 (822)
.|++.+|+|+++...++. .+++|+|+|||++|+|||||||+|+|.++.|++.++||++|+++++++.+.... ..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~ 81 (315)
T 1jwy_B 2 QLIPVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEW 81 (315)
T ss_dssp CHHHHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCE
T ss_pred chHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhh
Confidence 589999999997655554 589999999999999999999999999986688899999999999998754210 01
Q ss_pred cccccCCccccCCcccchhhHHHHHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHH
Q 003415 112 CRFQEEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDE 191 (822)
Q Consensus 112 ~~i~~~~~~ef~~~~~~~~~l~~~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~ 191 (822)
..+.. .-+....+++++.+.|...++.+.+ .+.+|+.+++.++|.+|+..+++||||||+...+..+++....+.
T Consensus 82 ~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~ 156 (315)
T 1jwy_B 82 GEFLH----KPNDMFYDFSEIREEIIRDTDRMTG-KNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQ 156 (315)
T ss_dssp EEESS----STTCCBCCTHHHHHHHHHHCC---------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHH
T ss_pred hhhhc----ccccccCCHHHHHHHHHHHHHHhcC-CCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHH
Confidence 11111 0122345667777777665443322 234899999999999999999999999999876555566677788
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCccccccccHHHHHHHhhhcCCcCCCCC
Q 003415 192 ILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRWEVDRYLSASGYLGENTR 271 (822)
Q Consensus 192 v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~~~~s~~~~v~~~l~~~G~l~~~~~ 271 (822)
+..++..|++..+.+|+++.+++.++.+++.+.+++.+++.+.++|+|+||+|+..+.. .. ..++. +.+.....
T Consensus 157 ~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~-~~---~~~~~--~~~~~~~~ 230 (315)
T 1jwy_B 157 IRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGT-DA---MEVLT--GRVIPLTL 230 (315)
T ss_dssp HHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSC-CC---HHHHT--TSSSCCTT
T ss_pred HHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcch-HH---HHHHh--CCCccCCC
Confidence 89999999999998888887778788777777888999999999999999999964332 11 11222 11111224
Q ss_pred CcEEeecCCCCCCCcHHH--HhhhhHhhHHHHHHhhhhhcCCCCccCcCCccChhHHHHHHHHHHHHHHHHhchHHHHHH
Q 003415 272 PFFVALPKDRNTVSNDEF--RRQISQVDVEVLRHLRDGIKGGYDEEKFKPYIGFGCLRDYLESELQKRYKEAAPATLALL 349 (822)
Q Consensus 272 gw~v~~p~~R~~~s~~e~--r~~~~q~D~~e~~~~~~~~~~~f~e~~~~~r~Gi~~Lr~~Ls~lL~~~I~~~LP~l~~~I 349 (822)
+|+.+.+.. .... ...+.+.-....++|....+ |. .+..++|...|...|.+.|..+++++||.++.+|
T Consensus 231 ~~~~v~~~s-----a~~~~~~~gv~~l~~~~~~~~~~~~~--~~--~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i 301 (315)
T 1jwy_B 231 GFIGVINRS-----QEDIIAKKSIRESLKSEILYFKNHPI--YK--SIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKV 301 (315)
T ss_dssp CEEECCCCC-----HHHHSSSCCHHHHHHHHHHHHHTCTT--GG--GSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEecCC-----hhhhccCCCHHHHHHHHHHHHhCCCc--cc--cchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 677664421 1111 01111111122344443221 32 3467899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 003415 350 EQRCNEVTTEMSRM 363 (822)
Q Consensus 350 ~~~l~~~~~eL~~L 363 (822)
++.+.+++++|.+|
T Consensus 302 ~~~l~~~~~~l~~~ 315 (315)
T 1jwy_B 302 SKMLSDVQGELSTY 315 (315)
T ss_dssp HHHTC---------
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999875
No 6
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.96 E-value=7.4e-28 Score=255.84 Aligned_cols=295 Identities=24% Similarity=0.346 Sum_probs=209.8
Q ss_pred hhHHHHHHHHHHHHHhc--CCCCCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCcccc
Q 003415 37 ASRFEAYNRLQAAAVAF--GEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRF 114 (822)
Q Consensus 37 ~~Lld~id~Lr~~g~~~--~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i 114 (822)
++|++.+++|++.-..+ +...++|+|+|||++|+|||||||+|+|.+|.+++.++||++|+++++.+.+. .+.+.+
T Consensus 2 ~~~~~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~--~~~~~~ 79 (299)
T 2aka_B 2 EDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTT--EYAEFL 79 (299)
T ss_dssp TTHHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSS--CEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCc--ccchhh
Confidence 35777788777654333 35689999999999999999999999999997688889999999999988754 222222
Q ss_pred ccCCccccCCcccchhhHHHHHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHH
Q 003415 115 QEEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILS 194 (822)
Q Consensus 115 ~~~~~~ef~~~~~~~~~l~~~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~ 194 (822)
. .+|..+++.+.+...++..+..+ ...+.+|+.+++.+++.+|+..+++||||||+......+++++....+..
T Consensus 80 ~-----~~g~~~tt~~~~~~~~~~~~~~i-~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~ 153 (299)
T 2aka_B 80 H-----CKGKKFTDFEEVRLEIEAETDRV-TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRD 153 (299)
T ss_dssp T-----STTCCBCCHHHHHHHHHHHHHHH-CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHH
T ss_pred h-----cCCcccCCHHHHHHHHHHHHHHh-cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHH
Confidence 1 12323355566666665444332 22336899999999999999999999999999887655566677778899
Q ss_pred HHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCccccccccHHHHHHHhhhcCCcCCCCCCcE
Q 003415 195 MVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLKEFSDRWEVDRYLSASGYLGENTRPFF 274 (822)
Q Consensus 195 LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~~~~s~~~~v~~~l~~~G~l~~~~~gw~ 274 (822)
++..|+++.+.+||+|++++.++..++++.+++.+++.+.++|+|+||+|+..+.. ... ..+. +.+.....+|+
T Consensus 154 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~-~~~---~~~~--~~~~~~~~~~~ 227 (299)
T 2aka_B 154 MLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGT-DAR---DVLE--NKLLPLRRGYI 227 (299)
T ss_dssp HHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTC-CCH---HHHT--TCSSCCTTCEE
T ss_pred HHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCc-hHH---HHHh--CCcCcCCCCcE
Confidence 99999999999999999999999999888899999999999999999999964332 111 1222 11111123566
Q ss_pred EeecCC-CCCCCcHHHHhhhhHhhHHHHHHhhhhhcCCCCccCcCCccChhHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 003415 275 VALPKD-RNTVSNDEFRRQISQVDVEVLRHLRDGIKGGYDEEKFKPYIGFGCLRDYLESELQKRYKEAAPATLALLEQRC 353 (822)
Q Consensus 275 v~~p~~-R~~~s~~e~r~~~~q~D~~e~~~~~~~~~~~f~e~~~~~r~Gi~~Lr~~Ls~lL~~~I~~~LP~l~~~I~~~l 353 (822)
.+.+.. .....-+++.+.+.+ +..+|.. ...|. .+..++|+..|...|.+.|..|++++||.++.+|++++
T Consensus 228 ~v~~~SA~~~~gi~~l~~~l~~----~~~~~~~--~~~~~--~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~~ 299 (299)
T 2aka_B 228 GVVNRSQKDIDGKKDITAALAA----ERKFFLS--HPSYR--HLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQL 299 (299)
T ss_dssp ECCCCCCBCTTSCBCHHHHHHH----HHHHHHH--CTTTG--GGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEECCChhhccccccHHHHHHH----HHHHHhc--CCccc--cchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhC
Confidence 554321 111011222222211 2333321 11122 23578999999999999999999999999999998763
No 7
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.54 E-value=7.5e-14 Score=166.51 Aligned_cols=172 Identities=17% Similarity=0.180 Sum_probs=110.9
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIK 137 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~ 137 (822)
+.+.|+|||++|+|||||||+|+|.++.+++...||++|+++... +. +++++...+.... ...+...+...+.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g--~~---~~~t~~~~~g~~~--~~~~~~~i~~~~~ 140 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYG--PE---KKVTIHFNDGKSP--QQLDFQNFKYKYT 140 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEEC--SS---CEEEEEESSSCCC--CEEEHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeC--CC---CeEEEEEcCCCcc--cccChhhhhhhhc
Confidence 456899999999999999999999998878889999999988653 22 2222211110000 0011111111100
Q ss_pred ---HHHHHHHhccCCccCCCceEEEEeecCC---CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEe
Q 003415 138 ---SRTEALLKKTKTSVSPKPIVMRAEYAHC---PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQ 211 (822)
Q Consensus 138 ---~a~e~~l~~~g~~fS~~~i~L~Ie~p~~---~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv 211 (822)
..... +...+.....+...++|..|.- .+++||||||+..... ...++..|+++.+ +||+|+
T Consensus 141 i~~~~~~~-l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----------~~~~~~~~i~~aD-~vL~Vv 208 (695)
T 2j69_A 141 IDPAEAKK-LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----------RNELSLGYVNNCH-AILFVM 208 (695)
T ss_dssp CCHHHHHH-HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----------CHHHHTHHHHSSS-EEEEEE
T ss_pred CCHHHHHH-HhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----------HHHHHHHHHHhCC-EEEEEE
Confidence 00001 1112223445667888888842 5899999999975421 2457788998876 788888
Q ss_pred cCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCcccc
Q 003415 212 QSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLK 248 (822)
Q Consensus 212 ~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~~ 248 (822)
+++..+...+...+.+.+...+.++|+|+||+|+..+
T Consensus 209 da~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 209 RASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp ETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred eCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 8887777666444444566667889999999999644
No 8
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.13 E-value=2.6e-10 Score=114.99 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=82.9
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCcc-cccccc-cccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHH
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRF-NVREVE-MGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIAD 134 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~f-p~r~~g-~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~ 134 (822)
-..|.|+|+|+.++|||||+++|+|..+ ...+.. .+|+.+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~-------------------------------------- 68 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI-------------------------------------- 68 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE--------------------------------------
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce--------------------------------------
Confidence 4678999999999999999999999863 211110 011111
Q ss_pred HHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCc--EEEEEec
Q 003415 135 IIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHR--ILVFLQQ 212 (822)
Q Consensus 135 ~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~s--IILaVv~ 212 (822)
....+.......++|+||||+..... +....+.+..++..|+..... ++++|++
T Consensus 69 ---------------------~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d 124 (223)
T 4dhe_A 69 ---------------------NYFSVGPAAEPVAHLVDLPGYGYAEV---PGAAKAHWEQLLSSYLQTRPQLCGMILMMD 124 (223)
T ss_dssp ---------------------EEEEESCTTSCSEEEEECCCCCSSCC---CSTHHHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred ---------------------EEEEecCCCCCcEEEEcCCCCCcccC---ChhhHHHHHHHHHHHHhcCcCcCEEEEEEe
Confidence 11111111236799999999865432 234466778899999977544 5777888
Q ss_pred CCcccchHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 213 SSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 213 A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
++..+...+ ..+.+.+...+.+.|.|+||+|+.
T Consensus 125 ~~~~~~~~~-~~~~~~l~~~~~p~i~v~nK~Dl~ 157 (223)
T 4dhe_A 125 ARRPLTELD-RRMIEWFAPTGKPIHSLLTKCDKL 157 (223)
T ss_dssp TTSCCCHHH-HHHHHHHGGGCCCEEEEEECGGGS
T ss_pred CCCCCCHHH-HHHHHHHHhcCCCEEEEEeccccC
Confidence 876554432 333333333568899999999995
No 9
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.01 E-value=5.6e-10 Score=129.84 Aligned_cols=166 Identities=19% Similarity=0.202 Sum_probs=91.1
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc--ccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN--VREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADI 135 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp--~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~ 135 (822)
..|.|+|||..|+|||||||+|+|..++ +.+...+|...+.+. .+... .+.++.. -+.+. ...
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~--~~~~~-----~i~~g~~-----l~~~~---~~~ 128 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVM--HGETE-----GTVPGNA-----LVVDP---EKP 128 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEE--CCSSS-----EEECCC-----------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEE--ECCcc-----cccCCce-----eeecC---ccc
Confidence 5689999999999999999999999985 344444554433332 21110 0001000 00000 000
Q ss_pred HHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc
Q 003415 136 IKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV 215 (822)
Q Consensus 136 I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~ 215 (822)
+. .+...|..|....+.+.+..+...+++||||||+............ ....++..|+...+ .||+|++++.
T Consensus 129 ~~-----~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~--~f~~~~~~~l~~aD-~il~VvDa~~ 200 (550)
T 2qpt_A 129 FR-----KLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGY--DFPAVLRWFAERVD-LIILLFDAHK 200 (550)
T ss_dssp --------------CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CCS--CHHHHHHHHHHHCS-EEEEEEETTS
T ss_pred HH-----HHhhhcccccccceEEeccccccCCEEEEECcCCCCcchhHHHHHh--hHHHHHHHHHHhCC-EEEEEEeCCc
Confidence 00 0112234455554555554444468999999999753221101110 14466778888777 5666677764
Q ss_pred -ccchHHHHHHHHHhCCCCCcEEEEeeCCCccc
Q 003415 216 -EWCSSLWLDAIREIDPTFRRTVIVVSKFDNRL 247 (822)
Q Consensus 216 -D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~ 247 (822)
++..+ ...+++.+...+.+.|+|+||+|++.
T Consensus 201 ~~~~~~-~~~~l~~l~~~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 201 LEISDE-FSEAIGALRGHEDKIRVVLNKADMVE 232 (550)
T ss_dssp CCCCHH-HHHHHHHTTTCGGGEEEEEECGGGSC
T ss_pred CCCCHH-HHHHHHHHHhcCCCEEEEEECCCccC
Confidence 34333 34555666666788999999999963
No 10
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.00 E-value=2.8e-09 Score=114.94 Aligned_cols=126 Identities=19% Similarity=0.297 Sum_probs=82.1
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcccccccc-cccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVE-MGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g-~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
+...|++||+.|+|||||+|+|+|.++...+.. .+||..+...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~------------------------------------ 52 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGV------------------------------------ 52 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE------------------------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEE------------------------------------
Confidence 445799999999999999999999987633211 1233221111
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE 216 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D 216 (822)
+......+++||||||+..... .....+.+..++..|++..+ ++|+|++++..
T Consensus 53 -----------------------~~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD-~il~VvD~~~~ 105 (308)
T 3iev_A 53 -----------------------KNIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEAD-VILFMIDATEG 105 (308)
T ss_dssp -----------------------EEETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCS-EEEEEEETTTB
T ss_pred -----------------------EecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCC-EEEEEEeCCCC
Confidence 1111124689999999976431 12345567778889999888 66666777755
Q ss_pred cchHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 217 WCSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 217 ~~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
+...+..-+.+.+...+.+.|.|+||.|+.
T Consensus 106 ~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 106 WRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp SCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 554442221344433468899999999995
No 11
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.00 E-value=2.1e-09 Score=115.70 Aligned_cols=123 Identities=18% Similarity=0.140 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCcccccccc-cccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHH
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVE-MGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADI 135 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g-~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~ 135 (822)
+.-..|++||+.|+|||||+|+|+|.++...+.. .+||..+.-.
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i----------------------------------- 49 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGI----------------------------------- 49 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE-----------------------------------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEE-----------------------------------
Confidence 3446799999999999999999999887532211 1232211100
Q ss_pred HHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc
Q 003415 136 IKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV 215 (822)
Q Consensus 136 I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~ 215 (822)
+. ....+++|+||||+.... ....+.+...+..|++..+ ++|+|++++.
T Consensus 50 ------------------------~~-~~~~~l~l~DTpG~~~~~-----~~l~~~~~~~~~~~l~~ad-~il~VvD~~~ 98 (301)
T 1wf3_A 50 ------------------------LT-EGRRQIVFVDTPGLHKPM-----DALGEFMDQEVYEALADVN-AVVWVVDLRH 98 (301)
T ss_dssp ------------------------EE-ETTEEEEEEECCCCCCCC-----SHHHHHHHHHHHHHTSSCS-EEEEEEETTS
T ss_pred ------------------------EE-eCCcEEEEecCccccchh-----hHHHHHHHHHHHHHHhcCC-EEEEEEECCC
Confidence 00 012578999999987532 1334456778889999887 6677777765
Q ss_pred ccchHH--HHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 216 EWCSSL--WLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 216 D~~nq~--il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
.+...+ +++.+++.. .+.+.|.|+||.|+.
T Consensus 99 ~~~~~~~~i~~~l~~~~-~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 99 PPTPEDELVARALKPLV-GKVPILLVGNKLDAA 130 (301)
T ss_dssp CCCHHHHHHHHHHGGGT-TTSCEEEEEECGGGC
T ss_pred CCChHHHHHHHHHHhhc-CCCCEEEEEECcccC
Confidence 554433 334444442 257899999999995
No 12
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.98 E-value=2.3e-09 Score=104.73 Aligned_cols=121 Identities=18% Similarity=0.176 Sum_probs=77.6
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCccccccccc-ccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHH
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEM-GTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADI 135 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~-cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~ 135 (822)
-..|.|+|+|+.++|||||+++|+|..+....... +|+.+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~--------------------------------------- 61 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSI--------------------------------------- 61 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCE---------------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCe---------------------------------------
Confidence 35679999999999999999999998754221100 01000
Q ss_pred HHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCC--cEEEEEecC
Q 003415 136 IKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPH--RILVFLQQS 213 (822)
Q Consensus 136 I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~--sIILaVv~A 213 (822)
....+ ...++|+||||+..... +....+....+...|+.... .+++.|+++
T Consensus 62 --------------------~~~~~----~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~ 114 (195)
T 3pqc_A 62 --------------------NFYLV----NSKYYFVDLPGYGYAKV---SKKERMLWKRLVEDYFKNRWSLQMVFLLVDG 114 (195)
T ss_dssp --------------------EEEEE----TTTEEEEECCCBSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEET
T ss_pred --------------------EEEEE----CCcEEEEECCCCccccC---ChhhHHHHHHHHHHHHhcCcCceEEEEEecC
Confidence 00000 13588999999765322 12234567788888887653 367777787
Q ss_pred CcccchHH--HHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 214 SVEWCSSL--WLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 214 ~~D~~nq~--il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
+.....+. +++.++.. +.+.|.|+||.|+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~---~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 115 RIPPQDSDLMMVEWMKSL---NIPFTIVLTKMDKV 146 (195)
T ss_dssp TSCCCHHHHHHHHHHHHT---TCCEEEEEECGGGS
T ss_pred CCCCCHHHHHHHHHHHHc---CCCEEEEEEChhcC
Confidence 75544433 33444443 68999999999995
No 13
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.96 E-value=2e-09 Score=105.75 Aligned_cols=126 Identities=15% Similarity=0.175 Sum_probs=76.5
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
-..+.|+|+|+.++|||||+++|+|..|...... | | . +
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~--~---------~-----~------------------------ 58 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSS--K--P---------G-----K------------------------ 58 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC------------------------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCC--C--C---------C-----c------------------------
Confidence 3578999999999999999999999876421100 0 0 0 0
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCC--cEEEEEecCC
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPH--RILVFLQQSS 214 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~--sIILaVv~A~ 214 (822)
+.......+ -.++.|+||||+..... +....+....++..|+.... .++++|++++
T Consensus 59 ---------------t~~~~~~~~----~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~ 116 (195)
T 1svi_A 59 ---------------TQTLNFYII----NDELHFVDVPGYGFAKV---SKSEREAWGRMIETYITTREELKAVVQIVDLR 116 (195)
T ss_dssp ----------------CCEEEEEE----TTTEEEEECCCBCCCSS---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETT
T ss_pred ---------------eeeEEEEEE----CCcEEEEECCCCCcccc---CHHHHHHHHHHHHHHHhhhhcCCEEEEEEECC
Confidence 000011111 13699999999865422 22234567788888887652 4677777877
Q ss_pred cccchHHHHHHHHHhCCCCCcEEEEeeCCCccc
Q 003415 215 VEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRL 247 (822)
Q Consensus 215 ~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~ 247 (822)
......+ ..+.+.+...+.+.|.|+||.|+..
T Consensus 117 ~~~~~~~-~~~~~~~~~~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 117 HAPSNDD-VQMYEFLKYYGIPVIVIATKADKIP 148 (195)
T ss_dssp SCCCHHH-HHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CCCCHHH-HHHHHHHHHcCCCEEEEEECcccCC
Confidence 6554443 2223333234678999999999953
No 14
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.95 E-value=1.5e-09 Score=111.74 Aligned_cols=126 Identities=17% Similarity=0.190 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcccccccc--cccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVE--MGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADI 135 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g--~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~ 135 (822)
..+.|+|||..++|||||+++|+|..++..+.. .+|+.+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~------------------------------------ 71 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKR------------------------------------ 71 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEE------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEE------------------------------------
Confidence 567999999999999999999999887633211 122222111
Q ss_pred HHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc
Q 003415 136 IKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV 215 (822)
Q Consensus 136 I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~ 215 (822)
.+.+ ....++||||||+......+ ....+.+...+..+...++ ++|+|++++
T Consensus 72 ---------------------~~~~---~~~~i~liDTpG~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~l~v~d~~- 123 (239)
T 3lxx_A 72 ---------------------SSSW---KETELVVVDTPGIFDTEVPN--AETSKEIIRCILLTSPGPH-ALLLVVPLG- 123 (239)
T ss_dssp ---------------------EEEE---TTEEEEEEECCSCC-----C--HHHHHHHHHHHHHTTTCCS-EEEEEEETT-
T ss_pred ---------------------EEEe---CCceEEEEECCCccCCCCCH--HHHHHHHHHHHHhcCCCCc-EEEEEeeCC-
Confidence 0111 11367899999998654321 2223456666666666777 555566654
Q ss_pred ccch--HHHHHHHH-HhCC-CCCcEEEEeeCCCccc
Q 003415 216 EWCS--SLWLDAIR-EIDP-TFRRTVIVVSKFDNRL 247 (822)
Q Consensus 216 D~~n--q~il~lar-~~Dp-~g~RTIgViTK~D~~~ 247 (822)
++.. ..++.... .+.. ...++|.|+||+|+..
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~ 159 (239)
T 3lxx_A 124 RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLG 159 (239)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-
T ss_pred CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCC
Confidence 2322 22333332 2211 1357999999999853
No 15
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.93 E-value=3.8e-09 Score=111.10 Aligned_cols=122 Identities=12% Similarity=0.040 Sum_probs=74.7
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHH
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIK 137 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~ 137 (822)
+|.|+++|++|+|||||+|+|+|..+. .+. ..+|.-.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~~-v~~~pg~Tv~~----------------------------------------- 38 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEK----------------------------------------- 38 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSEE-EEECTTSSSEE-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-ccCCCCceEEE-----------------------------------------
Confidence 489999999999999999999998754 221 0011100
Q ss_pred HHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhc--CCCCcEEEEEecCCc
Q 003415 138 SRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLA--SPPHRILVFLQQSSV 215 (822)
Q Consensus 138 ~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yi--k~~~sIILaVv~A~~ 215 (822)
..-.+...+ ..++||||||+......++.. ..-+.+.+.|+ .+++ +++.|+++++
T Consensus 39 ------------------~~~~~~~~~-~~~~lvDtpG~~~~~~~~~~~---~~~e~i~~~~~~~~~~d-~vi~VvDas~ 95 (256)
T 3iby_A 39 ------------------KTGEFLLGE-HLIEITDLPGVYSLVANAEGI---SQDEQIAAQSVIDLEYD-CIINVIDACH 95 (256)
T ss_dssp ------------------EEEEEEETT-EEEEEEECCCCSSCC---------CHHHHHHHHHHHHSCCS-EEEEEEEGGG
T ss_pred ------------------EEEEEEECC-eEEEEEeCCCcccccccccCC---CHHHHHHHHHHhhCCCC-EEEEEeeCCC
Confidence 011111111 378999999996543211111 12345667888 7777 6666666664
Q ss_pred ccchHHHHHHHHHhCCCCCcEEEEeeCCCcccc
Q 003415 216 EWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLK 248 (822)
Q Consensus 216 D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~~ 248 (822)
. ...+.+..++...+.+.|.|+||.|+...
T Consensus 96 ~---~~~~~l~~~l~~~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 96 L---ERHLYLTSQLFELGKPVVVALNMMDIAEH 125 (256)
T ss_dssp H---HHHHHHHHHHTTSCSCEEEEEECHHHHHH
T ss_pred c---hhHHHHHHHHHHcCCCEEEEEEChhcCCc
Confidence 2 22344555555568899999999998543
No 16
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.91 E-value=8.4e-09 Score=108.56 Aligned_cols=150 Identities=19% Similarity=0.254 Sum_probs=89.9
Q ss_pred cccccCcchhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCC
Q 003415 27 LSATDSASTRASRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDP 105 (822)
Q Consensus 27 ~~~~l~s~~~~~Lld~id~Lr~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~ 105 (822)
.-..+....+..|.+.+.++...+ ..-+.|+|||+.++|||||+|+|+|..+...+. ..+|+.+.
T Consensus 13 g~~~l~~~~~~~l~~~~~~~~~~~------~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~-------- 78 (270)
T 1h65_A 13 GINTFAPATQTKLLELLGNLKQED------VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPV-------- 78 (270)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHTT------CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCE--------
T ss_pred chhhccHHHHHHHHHHHHHHhhcC------CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeE--------
Confidence 344566667778888888877643 345799999999999999999999987642221 11122111
Q ss_pred CCCCCccccccCCccccCCcccchhhHHHHHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCC
Q 003415 106 TALDPRCRFQEEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEP 185 (822)
Q Consensus 106 ~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~ 185 (822)
.+.+.. ....++||||||+.....
T Consensus 79 ---------------------------------------------------~~~~~~-~~~~l~iiDTpG~~~~~~---- 102 (270)
T 1h65_A 79 ---------------------------------------------------MVSRSR-AGFTLNIIDTPGLIEGGY---- 102 (270)
T ss_dssp ---------------------------------------------------EEEEEE-TTEEEEEEECCCSEETTE----
T ss_pred ---------------------------------------------------EEEEee-CCeEEEEEECCCCCCCcc----
Confidence 111111 124699999999865421
Q ss_pred CCchHHHHHHHHHhcC--CCCcEEEEEecCCc-ccchH--HHHHHHHHhCCC--CCcEEEEeeCCCccccc
Q 003415 186 ENTPDEILSMVKSLAS--PPHRILVFLQQSSV-EWCSS--LWLDAIREIDPT--FRRTVIVVSKFDNRLKE 249 (822)
Q Consensus 186 ~~~~~~v~~LV~~Yik--~~~sIILaVv~A~~-D~~nq--~il~lar~~Dp~--g~RTIgViTK~D~~~~~ 249 (822)
....+.+.+..|+. ..+ ++|+|++.+. .+... .+++.+++.... ..++|.|+||+|+..+.
T Consensus 103 --~~~~~~~~i~~~~~~~~~d-~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 103 --INDMALNIIKSFLLDKTID-VLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp --ECHHHHHHHHHHTTTCEEC-EEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred --chHHHHHHHHHHhhcCCCC-EEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 22334445566764 344 5555544332 33322 355544443221 15899999999986443
No 17
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.88 E-value=4.8e-08 Score=98.03 Aligned_cols=67 Identities=12% Similarity=0.098 Sum_probs=45.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCC----CCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDP----TFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp----~g~RTIgViT 241 (822)
..+.|+||||. +....+...|+++.+ ++++|++++....-..+..+...+.. .+.+.|.|+|
T Consensus 84 ~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d-~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~N 149 (217)
T 2f7s_A 84 VHLQLWDTAGQ-------------ERFRSLTTAFFRDAM-GFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 149 (217)
T ss_dssp EEEEEEEEESH-------------HHHHHHHHHHHTTCC-EEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred EEEEEEECCCc-------------HhHHhHHHHHhcCCC-EEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEE
Confidence 46899999993 345677889999887 55556666644333334444444432 4678999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 150 K~Dl~ 154 (217)
T 2f7s_A 150 KADLP 154 (217)
T ss_dssp CTTCG
T ss_pred CCccc
Confidence 99984
No 18
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.88 E-value=8.7e-09 Score=99.23 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..+.|+|+|+.++|||||+++|++..++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~ 35 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC--
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5679999999999999999999998776
No 19
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.85 E-value=2.1e-08 Score=99.83 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIK 137 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~ 137 (822)
..+.|+|||+.++||||||++|++..|++....+.++- +
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--------------------------~--------------- 57 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGID--------------------------F--------------- 57 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCC--------------------------E---------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccce--------------------------E---------------
Confidence 46799999999999999999999888753211110100 0
Q ss_pred HHHHHHHhccCCccCCCceEEEEeecC-CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc
Q 003415 138 SRTEALLKKTKTSVSPKPIVMRAEYAH-CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE 216 (822)
Q Consensus 138 ~a~e~~l~~~g~~fS~~~i~L~Ie~p~-~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D 216 (822)
....+...+ ...++|+||||.... ..+...|++..+. +++|++++..
T Consensus 58 ------------------~~~~~~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~-ii~v~d~~~~ 105 (213)
T 3cph_A 58 ------------------KIKTVDINGKKVKLQLWDTAGQERF-------------RTITTAYYRGAMG-IILVYDVTDE 105 (213)
T ss_dssp ------------------EEEEEEETTEEEEEEEECCTTGGGG-------------TCCCHHHHTTCSE-EEEEEETTCH
T ss_pred ------------------EEEEEEECCEEEEEEEEeCCCcHHH-------------HHHHHHHhccCCE-EEEEEECCCH
Confidence 000111111 136899999995432 1234678888874 5555565532
Q ss_pred cch---HHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 217 WCS---SLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 217 ~~n---q~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
..- ..++..+....+.+.+.|.|+||.|+
T Consensus 106 ~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 137 (213)
T 3cph_A 106 RTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137 (213)
T ss_dssp HHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 221 23556666655667899999999998
No 20
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.85 E-value=4e-08 Score=95.50 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=44.1
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCC-CCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDP-TFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp-~g~RTIgViT 241 (822)
..+.|+||||.- ....+...|+++.+. +++|++++....-. .++..+..... .+.+.|.|+|
T Consensus 70 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 135 (195)
T 3bc1_A 70 IHLQLWDTAGLE-------------RFRSLTTAFFRDAMG-FLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGN 135 (195)
T ss_dssp EEEEEEEECCSG-------------GGHHHHHHTTTTCSE-EEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEE
T ss_pred EEEEEEeCCCcH-------------HHHHHHHHHHcCCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 468999999962 235677889998885 45556665433222 23443443332 4688999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 136 K~Dl~ 140 (195)
T 3bc1_A 136 KSDLE 140 (195)
T ss_dssp CTTCG
T ss_pred Ccccc
Confidence 99985
No 21
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.85 E-value=3.1e-08 Score=96.66 Aligned_cols=29 Identities=34% Similarity=0.303 Sum_probs=26.0
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNV 86 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~ 86 (822)
....|+|+|+.++||||||++|+|..|+.
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~ 34 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHE 34 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCC
Confidence 45689999999999999999999998863
No 22
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.85 E-value=6.9e-09 Score=117.68 Aligned_cols=124 Identities=21% Similarity=0.284 Sum_probs=76.8
Q ss_pred CCCCCEEEEEcCCCCchhhHHHHHhCCcccccccc-cccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHH
Q 003415 56 KLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVE-MGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIAD 134 (822)
Q Consensus 56 ~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g-~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~ 134 (822)
....|.|++||+.|+|||||+|+|+|..+..+... .+||
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~---------------------------------------- 59 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTR---------------------------------------- 59 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC--------------------------------------------------
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcce----------------------------------------
Confidence 45689999999999999999999999765422110 0111
Q ss_pred HHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCC
Q 003415 135 IIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSS 214 (822)
Q Consensus 135 ~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~ 214 (822)
+.+...++.. ...++||||||+... .....+.++.++..|+...+ +||+|+++.
T Consensus 60 -------------------~~~~~~~~~~-~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad-~il~VvD~~ 113 (456)
T 4dcu_A 60 -------------------DRIYSSAEWL-NYDFNLIDTGGIDIG-----DEPFLAQIRQQAEIAMDEAD-VIIFMVNGR 113 (456)
T ss_dssp --------------------CEEEECTTC-SSCCEEECCCC-----------CCHHHHHHHHHHHHHHCS-EEEEEEESS
T ss_pred -------------------eEEEEEEEEC-CceEEEEECCCCCCc-----chHHHHHHHHHHHhhHhhCC-EEEEEEeCC
Confidence 1112222221 247899999998732 23456788999999999988 666777777
Q ss_pred cccchHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 215 VEWCSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 215 ~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
..+...+ ..+++.+...+...|.|+||.|+.
T Consensus 114 ~~~~~~d-~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 114 EGVTAAD-EEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp SCSCHHH-HHHHHHHTTCCSCEEEEEECC---
T ss_pred CCCChHH-HHHHHHHHHcCCCEEEEEECccch
Confidence 6554443 344555555688999999999984
No 23
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.84 E-value=5.6e-08 Score=96.35 Aligned_cols=67 Identities=16% Similarity=0.154 Sum_probs=45.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||... ...+...|+++.+ ++++|++++....- ..++..+....+.+.+.|.|+||
T Consensus 57 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 122 (203)
T 1zbd_A 57 IKLQIWDTAGLER-------------YRTITTAYYRGAM-GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNK 122 (203)
T ss_dssp EEEEEEEECCSGG-------------GHHHHHTTGGGCS-EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEEC
T ss_pred EEEEEEECCCchh-------------hcchHHHhhcCCC-EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 4688999999632 3456788998887 45555666533221 23455555555567899999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 123 ~Dl~ 126 (203)
T 1zbd_A 123 CDME 126 (203)
T ss_dssp TTCT
T ss_pred cccC
Confidence 9984
No 24
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.83 E-value=1.4e-08 Score=95.99 Aligned_cols=119 Identities=21% Similarity=0.195 Sum_probs=74.7
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCcccccccc-cccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHH
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFNVREVE-MGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIK 137 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g-~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~ 137 (822)
+|.|+|+|+.++|||||+++|++..+...+.. .+|+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~------------------------------------------- 37 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTR------------------------------------------- 37 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC------------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCcee-------------------------------------------
Confidence 48999999999999999999998775421100 0000
Q ss_pred HHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc
Q 003415 138 SRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW 217 (822)
Q Consensus 138 ~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~ 217 (822)
+.....+...+ ..+.|+||||..... ........+...|++..+. +++|++++..+
T Consensus 38 ----------------~~~~~~~~~~~-~~~~l~Dt~G~~~~~------~~~~~~~~~~~~~~~~~~~-~i~v~d~~~~~ 93 (161)
T 2dyk_A 38 ----------------DLKEGVVETDR-GRFLLVDTGGLWSGD------KWEKKIQEKVDRALEDAEV-VLFAVDGRAEL 93 (161)
T ss_dssp ----------------CCEEEEEEETT-EEEEEEECGGGCSSS------SCCHHHHHHHHHHTTTCSE-EEEEEESSSCC
T ss_pred ----------------cceEEEEEeCC-ceEEEEECCCCCCcc------chHHHHHHHHHHHHHhCCE-EEEEEECCCcc
Confidence 01111222222 368999999986432 1345567778889998885 45566666544
Q ss_pred chH--HHHHHHHHhCCCCCcEEEEeeCCCccc
Q 003415 218 CSS--LWLDAIREIDPTFRRTVIVVSKFDNRL 247 (822)
Q Consensus 218 ~nq--~il~lar~~Dp~g~RTIgViTK~D~~~ 247 (822)
... .+.++.++ .+.+.|.|+||.|+..
T Consensus 94 ~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 94 TQADYEVAEYLRR---KGKPVILVATKVDDPK 122 (161)
T ss_dssp CHHHHHHHHHHHH---HTCCEEEEEECCCSGG
T ss_pred cHhHHHHHHHHHh---cCCCEEEEEECccccc
Confidence 432 34455554 3578999999999953
No 25
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.83 E-value=9.6e-09 Score=115.96 Aligned_cols=120 Identities=18% Similarity=0.282 Sum_probs=74.9
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHH
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIK 137 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~ 137 (822)
+|.|++||++|+|||||+|+|+|.++..++. -.+||
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~------------------------------------------- 37 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTR------------------------------------------- 37 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC---------------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCcc-------------------------------------------
Confidence 5899999999999999999999976532210 01111
Q ss_pred HHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc
Q 003415 138 SRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW 217 (822)
Q Consensus 138 ~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~ 217 (822)
+.+.-.++.. -..+.|+||||+..... ....+.++.++..|++..+ +||+|+|+...+
T Consensus 38 ----------------d~~~~~~~~~-~~~~~l~DT~G~~~~~~----~~~~~~~~~~~~~~~~~ad-~il~V~D~~~~~ 95 (439)
T 1mky_A 38 ----------------DPVQDTVEWY-GKTFKLVDTCGVFDNPQ----DIISQKMKEVTLNMIREAD-LVLFVVDGKRGI 95 (439)
T ss_dssp ----------------CCSEEEEEET-TEEEEEEECTTTTSSGG----GCCCHHHHHHHHHHHTTCS-EEEEEEETTTCC
T ss_pred ----------------ceeeEEEEEC-CeEEEEEECCCcccccc----chHHHHHHHHHHHHHHhCC-EEEEEEECCCCC
Confidence 1111112211 13578999999864321 1234668889999999998 666667877655
Q ss_pred chHH--HHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 218 CSSL--WLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 218 ~nq~--il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
...+ +.++.++ .+.+.|.|+||+|+.
T Consensus 96 ~~~d~~i~~~l~~---~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 96 TKEDESLADFLRK---STVDTILVANKAENL 123 (439)
T ss_dssp CHHHHHHHHHHHH---HTCCEEEEEESCCSH
T ss_pred CHHHHHHHHHHHH---cCCCEEEEEeCCCCc
Confidence 4432 4444444 367899999999984
No 26
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.82 E-value=1.7e-08 Score=104.97 Aligned_cols=125 Identities=20% Similarity=0.199 Sum_probs=74.5
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccccccccc--ccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVEM--GTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADI 135 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~--cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~ 135 (822)
..+.|+|+|+.++|||||+|+|+|......+... +|+.....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~------------------------------------ 64 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKS------------------------------------ 64 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEE------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEE------------------------------------
Confidence 4579999999999999999999998733222110 22221100
Q ss_pred HHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc
Q 003415 136 IKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV 215 (822)
Q Consensus 136 I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~ 215 (822)
.+.. +..+++||||||+..... ......+.+...+..|+...+ .+|+|++++.
T Consensus 65 -----------------------~~~~-~~~~i~iiDTpG~~~~~~--~~~~~~~~i~~~~~~~~~~~d-~il~V~d~~~ 117 (260)
T 2xtp_A 65 -----------------------QGSW-GNREIVIIDTPDMFSWKD--HCEALYKEVQRCYLLSAPGPH-VLLLVTQLGR 117 (260)
T ss_dssp -----------------------EEEE-TTEEEEEEECCGGGGSSC--CCHHHHHHHHHHHHHHTTCCS-EEEEEEETTC
T ss_pred -----------------------EEEe-CCCEEEEEECcCCCCCCC--CHHHHHHHHHHHHHhcCCCCc-EEEEEEeCCC
Confidence 0000 124689999999986532 111122344555667888888 4555566653
Q ss_pred ccchH--HHHHHHHHhCCC--CCcEEEEee-CCCcc
Q 003415 216 EWCSS--LWLDAIREIDPT--FRRTVIVVS-KFDNR 246 (822)
Q Consensus 216 D~~nq--~il~lar~~Dp~--g~RTIgViT-K~D~~ 246 (822)
+..+ .+++.++++-.. +...|.|+| |.|+.
T Consensus 118 -~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~ 152 (260)
T 2xtp_A 118 -YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN 152 (260)
T ss_dssp -CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred -CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccC
Confidence 4433 244555544211 357888888 99995
No 27
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.81 E-value=1.8e-08 Score=96.03 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=42.5
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.+.|+||||.... ..+...|+++.+ ++++|++++....- ..++..+....+.+.+.|.|+||.
T Consensus 53 ~~~l~D~~G~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 118 (170)
T 1g16_A 53 KLQIWDTAGQERF-------------RTITTAYYRGAM-GIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS 118 (170)
T ss_dssp EEEEECCTTGGGT-------------SCCCHHHHTTEE-EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEEEEeCCCChhh-------------hhhHHHHhccCC-EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 6889999995322 123466777776 55556666533221 235555666555578999999999
Q ss_pred Cc
Q 003415 244 DN 245 (822)
Q Consensus 244 D~ 245 (822)
|+
T Consensus 119 Dl 120 (170)
T 1g16_A 119 DM 120 (170)
T ss_dssp TC
T ss_pred cC
Confidence 98
No 28
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.81 E-value=8.8e-08 Score=94.14 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=44.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||.... ..+...|+++.+. +++|++++....- ..++..+......+.+.|.|+||
T Consensus 74 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~-vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK 139 (193)
T 2oil_A 74 VKAQIWDTAGLERY-------------RAITSAYYRGAVG-ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNK 139 (193)
T ss_dssp EEEEEEEESCCCTT-------------CTTHHHHHTTCCE-EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred EEEEEEeCCCchhh-------------hhhhHHHhccCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 35899999997432 2345678888874 4555666543221 23455555544457889999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 140 ~Dl~~ 144 (193)
T 2oil_A 140 SDLSQ 144 (193)
T ss_dssp GGGGG
T ss_pred CCccc
Confidence 99953
No 29
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.80 E-value=3.9e-08 Score=96.82 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=47.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccc---hHHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWC---SSLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~---nq~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||. +....+...|+++.+. +++|+++++.-. -..++..++...+.+.+.|.|+||
T Consensus 72 ~~~~i~Dt~G~-------------~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 137 (191)
T 3dz8_A 72 VKLQIWDTAGQ-------------ERYRTITTAYYRGAMG-FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNK 137 (191)
T ss_dssp EEEEEECHHHH-------------HHCHHHHHHHHTTCCE-EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEeCCCh-------------HHHHHHHHHHHccCCE-EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 35899999993 2345678889998885 455555553221 123666667766667899999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 138 ~Dl~ 141 (191)
T 3dz8_A 138 CDME 141 (191)
T ss_dssp TTCG
T ss_pred CCCc
Confidence 9984
No 30
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.80 E-value=2.2e-08 Score=97.49 Aligned_cols=122 Identities=22% Similarity=0.285 Sum_probs=72.8
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHH
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKS 138 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~ 138 (822)
++.|+|+|+.++|||||+++|++..|+......+|+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~-------------------------------------------- 36 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTR-------------------------------------------- 36 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTT--------------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccc--------------------------------------------
Confidence 478999999999999999999998775211000010
Q ss_pred HHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCC-CCc--EEEEEecCCc
Q 003415 139 RTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASP-PHR--ILVFLQQSSV 215 (822)
Q Consensus 139 a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~-~~s--IILaVv~A~~ 215 (822)
+...+.+ ..+.|+||||+..... .+....+..+.+...|+.. .+. +++.|+++..
T Consensus 37 ---------------~~~~~~~-----~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s 94 (190)
T 2cxx_A 37 ---------------KIIEIEW-----KNHKIIDMPGFGFMMG--LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKA 94 (190)
T ss_dssp ---------------SCEEEEE-----TTEEEEECCCBSCCTT--SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTH
T ss_pred ---------------eeEEEec-----CCEEEEECCCcccccc--CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchh
Confidence 0111122 1789999999754321 1122245677888888875 443 4445555542
Q ss_pred ccch--HHH---------HHHHHHhCCCCCcEEEEeeCCCccc
Q 003415 216 EWCS--SLW---------LDAIREIDPTFRRTVIVVSKFDNRL 247 (822)
Q Consensus 216 D~~n--q~i---------l~lar~~Dp~g~RTIgViTK~D~~~ 247 (822)
+.+ ..+ ..+.+.+...+.+.|.|+||.|+..
T Consensus 95 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (190)
T 2cxx_A 95 -APEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIK 136 (190)
T ss_dssp -HHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCS
T ss_pred -hhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccC
Confidence 111 111 1233333334688999999999953
No 31
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.80 E-value=5.1e-08 Score=93.77 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..+.|+|+|+.++|||||+++|++..|.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~ 35 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV 35 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc
Confidence 4568999999999999999999998765
No 32
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.79 E-value=1.2e-08 Score=107.62 Aligned_cols=77 Identities=19% Similarity=0.178 Sum_probs=47.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchH---HHHHHHHHhcCC-------------CCcEEEEEecCCcccchHHHHHHHHHh
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPD---EILSMVKSLASP-------------PHRILVFLQQSSVEWCSSLWLDAIREI 229 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~---~v~~LV~~Yik~-------------~~sIILaVv~A~~D~~nq~il~lar~~ 229 (822)
..|+||||||+...... ...... .+.+....|+.. .+.++++|.++...+...+ ..+.+.+
T Consensus 65 ~~l~liDTpG~~d~~~~--~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d-~~~l~~l 141 (274)
T 3t5d_A 65 LLLTIVDTPGFGDAVDN--SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRL 141 (274)
T ss_dssp EEEEEEECCCCSCCSCC--TTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH-HHHHHHH
T ss_pred EEEEEEECCCccccccc--hhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH-HHHHHHH
Confidence 37999999999654321 111211 222222566654 4456666666654555444 4456666
Q ss_pred CCCCCcEEEEeeCCCcc
Q 003415 230 DPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 230 Dp~g~RTIgViTK~D~~ 246 (822)
.. +...|.|+||.|+.
T Consensus 142 ~~-~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 142 HE-KVNIIPLIAKADTL 157 (274)
T ss_dssp TT-TSCEEEEESSGGGS
T ss_pred hc-cCCEEEEEeccCCC
Confidence 55 78999999999985
No 33
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.79 E-value=3.1e-08 Score=103.82 Aligned_cols=148 Identities=20% Similarity=0.264 Sum_probs=87.7
Q ss_pred cccCcchhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCC
Q 003415 29 ATDSASTRASRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTA 107 (822)
Q Consensus 29 ~~l~s~~~~~Lld~id~Lr~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~ 107 (822)
..+....+..|.+.+.++...+ ..-..|+|+|+.++|||||+|+|+|..+...+. ..+|..+
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~------~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~----------- 74 (262)
T 3def_A 12 QQFPAATQEKLIEFFGKLKQKD------MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRP----------- 74 (262)
T ss_dssp HTSCHHHHHHHHHHHHHHHHTT------CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCC-----------
T ss_pred hhccHHHHHHHHHHHHHHhhcc------CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceee-----------
Confidence 3455556677778878777643 245689999999999999999999977532211 0011111
Q ss_pred CCCccccccCCccccCCcccchhhHHHHHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCC
Q 003415 108 LDPRCRFQEEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPEN 187 (822)
Q Consensus 108 ~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~ 187 (822)
....+... ...++|+||||+.... .
T Consensus 75 ------------------------------------------------~~~~~~~~-~~~l~liDTpG~~~~~------~ 99 (262)
T 3def_A 75 ------------------------------------------------VMVSRTMG-GFTINIIDTPGLVEAG------Y 99 (262)
T ss_dssp ------------------------------------------------EEEEEEET-TEEEEEEECCCSEETT------E
T ss_pred ------------------------------------------------EEEEEEEC-CeeEEEEECCCCCCcc------c
Confidence 11111111 1378999999997543 2
Q ss_pred chHHHHHHHHHhcCCC-CcEEEEEecCCc-ccchH--HHHHHHHHhCCC--CCcEEEEeeCCCcccc
Q 003415 188 TPDEILSMVKSLASPP-HRILVFLQQSSV-EWCSS--LWLDAIREIDPT--FRRTVIVVSKFDNRLK 248 (822)
Q Consensus 188 ~~~~v~~LV~~Yik~~-~sIILaVv~A~~-D~~nq--~il~lar~~Dp~--g~RTIgViTK~D~~~~ 248 (822)
..+.....+.+|+..+ -.++|+|.+.+. .+... .+++.+++.-.. ..++|.|+||.|+..+
T Consensus 100 ~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 100 VNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp ECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred chHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 2234455566666543 235666654432 24332 456555554221 2489999999998533
No 34
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.78 E-value=2.3e-08 Score=98.09 Aligned_cols=84 Identities=19% Similarity=0.210 Sum_probs=50.9
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccc---hHHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWC---SSLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~---nq~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.+.|+||||.... ..+...|++..+ ++++|+++++... -..++..+....+.+.+.|.|+||.
T Consensus 66 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~ 131 (196)
T 3tkl_A 66 KLQIWDTAGQERF-------------RTITSSYYRGAH-GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 131 (196)
T ss_dssp EEEEEEECCSGGG-------------CTTHHHHHTTCS-EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEEEEECCCcHhh-------------hhhHHHHHhhCC-EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 6889999995321 235677888887 4555566553221 1235566666666678999999999
Q ss_pred CccccccccHHHHHHHhhhcC
Q 003415 244 DNRLKEFSDRWEVDRYLSASG 264 (822)
Q Consensus 244 D~~~~~~s~~~~v~~~l~~~G 264 (822)
|+.............+....|
T Consensus 132 Dl~~~~~~~~~~~~~~~~~~~ 152 (196)
T 3tkl_A 132 DLTTKKVVDYTTAKEFADSLG 152 (196)
T ss_dssp TCTTTCCSCHHHHHHHHHHTT
T ss_pred ccccccccCHHHHHHHHHHcC
Confidence 985433222223344444333
No 35
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.78 E-value=8.5e-08 Score=94.08 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=43.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||.-.. ..+...|+++.+. +++|+++++...- ..++..++.....+.+.|.|+||
T Consensus 71 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 136 (189)
T 2gf9_A 71 IKLQIWDTAGQERY-------------RTITTAYYRGAMG-FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNK 136 (189)
T ss_dssp EEEEEEECCSCCSS-------------CCSGGGGGTTCSE-EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEeCCCcHHH-------------hhhHHHhccCCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 36789999995321 1234678888874 4555665533221 23555566665567899999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 137 ~Dl~ 140 (189)
T 2gf9_A 137 CDLE 140 (189)
T ss_dssp TTCG
T ss_pred cccc
Confidence 9985
No 36
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.78 E-value=3.2e-08 Score=100.78 Aligned_cols=125 Identities=21% Similarity=0.251 Sum_probs=71.2
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIK 137 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~ 137 (822)
..+.|+|||+.++|||||+++|+|..|........|+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~----------------------------------------- 66 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL----------------------------------------- 66 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CE-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceee-----------------------------------------
Confidence 467999999999999999999999877521100111100
Q ss_pred HHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc
Q 003415 138 SRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW 217 (822)
Q Consensus 138 ~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~ 217 (822)
..-.+.. ....+.|+||||....... +...... ..+..|....+ ++|+|++++...
T Consensus 67 ------------------~~~~~~~-~~~~~~l~DtpG~~~~~~~---~~~~~~~-~~~~~~~~~~d-~~i~v~d~~~~~ 122 (228)
T 2qu8_A 67 ------------------YVGHFDH-KLNKYQIIDTPGLLDRAFE---NRNTIEM-TTITALAHING-VILFIIDISEQC 122 (228)
T ss_dssp ------------------EEEEEEE-TTEEEEEEECTTTTTSCGG---GCCHHHH-HHHHHHHTSSE-EEEEEEETTCTT
T ss_pred ------------------eeeeeec-CCCeEEEEECCCCcCcccc---hhhhHHH-HHHHHhhcccc-EEEEEEeccccc
Confidence 0000011 1246899999999643210 1111111 22345655555 666677776432
Q ss_pred c--hHHHHHHHHHhCCC--CCcEEEEeeCCCccc
Q 003415 218 C--SSLWLDAIREIDPT--FRRTVIVVSKFDNRL 247 (822)
Q Consensus 218 ~--nq~il~lar~~Dp~--g~RTIgViTK~D~~~ 247 (822)
. ...+..+...+... ..+.|.|+||.|+..
T Consensus 123 s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 123 GLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp SSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred CcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 2 23334444444332 678999999999953
No 37
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.78 E-value=8e-08 Score=94.04 Aligned_cols=68 Identities=21% Similarity=0.159 Sum_probs=37.1
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhC-CCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREID-PTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~D-p~g~RTIgViT 241 (822)
..+.|+|+||.. ....+...|++..+.+| +|.++++...-. .++..+.... ..+.+.|.|+|
T Consensus 69 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~n 134 (190)
T 3con_A 69 CLLDILDTAGQE-------------EYSAMRDQYMRTGEGFL-CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGN 134 (190)
T ss_dssp EEEEEEECCC------------------------CTTCSEEE-EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEE
T ss_pred EEEEEEECCChH-------------HHHHHHHHhhCcCCEEE-EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 358899999942 12346678898888555 555555332222 2344444432 34689999999
Q ss_pred CCCccc
Q 003415 242 KFDNRL 247 (822)
Q Consensus 242 K~D~~~ 247 (822)
|.|+..
T Consensus 135 K~Dl~~ 140 (190)
T 3con_A 135 KCDLPT 140 (190)
T ss_dssp CTTCSC
T ss_pred CCcCCc
Confidence 999853
No 38
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.77 E-value=3.2e-08 Score=95.04 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=51.1
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||... .+.+...|+++.+. +++|++++..... ..++..++.....+.+.|.|+||
T Consensus 64 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 129 (179)
T 1z0f_A 64 IKLQIWDTAGQER-------------FRAVTRSYYRGAAG-ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNK 129 (179)
T ss_dssp EEEEEEECTTGGG-------------TCHHHHHHHHTCSE-EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEECCCChH-------------hhhhHHHHhccCCE-EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 3689999999421 23456788888874 5555666543222 23455556655557889999999
Q ss_pred CCccccccccHHHHHHHhhhcC
Q 003415 243 FDNRLKEFSDRWEVDRYLSASG 264 (822)
Q Consensus 243 ~D~~~~~~s~~~~v~~~l~~~G 264 (822)
.|+.....-...++..+....|
T Consensus 130 ~Dl~~~~~~~~~~~~~~~~~~~ 151 (179)
T 1z0f_A 130 ADLEAQRDVTYEEAKQFAEENG 151 (179)
T ss_dssp TTCGGGCCSCHHHHHHHHHHTT
T ss_pred cccccccccCHHHHHHHHHHcC
Confidence 9995332222223444544433
No 39
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.77 E-value=2.7e-08 Score=96.78 Aligned_cols=67 Identities=18% Similarity=0.162 Sum_probs=45.0
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.+.|+||||.. ....+...|+++.+.+ ++|++++....- ..++..++.....+.+.|.|+||.
T Consensus 60 ~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 125 (186)
T 2bme_A 60 KLQIWDTAGQE-------------RFRSVTRSYYRGAAGA-LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 125 (186)
T ss_dssp EEEEEEECCSG-------------GGHHHHHTTSTTCSEE-EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEeCCCcH-------------HHHHHHHHHHhcCCEE-EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 68899999952 2345678899988854 555555533221 234555555555678999999999
Q ss_pred Cccc
Q 003415 244 DNRL 247 (822)
Q Consensus 244 D~~~ 247 (822)
|+..
T Consensus 126 Dl~~ 129 (186)
T 2bme_A 126 DLDA 129 (186)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9953
No 40
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.77 E-value=5.3e-08 Score=95.90 Aligned_cols=67 Identities=18% Similarity=0.156 Sum_probs=43.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||.... +.+...|+++.+.+ ++|++++....- ..++..++.....+...|.|+||
T Consensus 70 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~i-i~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK 135 (191)
T 2a5j_A 70 IKLQIWDTAGQESF-------------RSITRSYYRGAAGA-LLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNK 135 (191)
T ss_dssp EEEEEECCTTGGGT-------------SCCCHHHHTTCSEE-EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEECCCchhh-------------hhhHHHHhccCCEE-EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 36899999995322 12346788888755 555565532221 23555555555557889999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 136 ~Dl~ 139 (191)
T 2a5j_A 136 SDLE 139 (191)
T ss_dssp TTCG
T ss_pred cccC
Confidence 9984
No 41
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.77 E-value=2.4e-08 Score=105.83 Aligned_cols=121 Identities=14% Similarity=0.053 Sum_probs=71.8
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHH
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIK 137 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~ 137 (822)
-+.|+++|+.|+|||||+|+|+|..+. ++. ..+|.-+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~-v~~~~g~t~~~----------------------------------------- 40 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVER----------------------------------------- 40 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEE-EEECTTSSSEE-----------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcc-cCCCCCeeEEE-----------------------------------------
Confidence 468999999999999999999998764 221 1111111
Q ss_pred HHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhc--CCCCcEEEEEecCCc
Q 003415 138 SRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLA--SPPHRILVFLQQSSV 215 (822)
Q Consensus 138 ~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yi--k~~~sIILaVv~A~~ 215 (822)
..-.++.. ...+.||||||+........... .-+.+.+.|+ .+.+ +++.|+++++
T Consensus 41 ------------------~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~---~~e~i~~~~~~~~~~d-~ii~VvD~~~ 97 (274)
T 3i8s_A 41 ------------------KEGQFSTT-DHQVTLVDLPGTYSLTTISSQTS---LDEQIACHYILSGDAD-LLINVVDASN 97 (274)
T ss_dssp ------------------EEEEEECS-SCEEEEEECCCCSCSCC----CC---HHHHHHHHHHHHTCCS-EEEEEEEGGG
T ss_pred ------------------EEEEEEeC-CCceEEEECcCCCccccccccCC---HHHHHHHHHHhhcCCC-EEEEEecCCC
Confidence 01111111 24688999999876432111112 2234556666 5666 6666777664
Q ss_pred ccchHHHHHHHHHhCCCCCcEEEEeeCCCccc
Q 003415 216 EWCSSLWLDAIREIDPTFRRTVIVVSKFDNRL 247 (822)
Q Consensus 216 D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~ 247 (822)
.-.+..+...+.+. +.+.|.|+||.|+..
T Consensus 98 ~~~~~~~~~~l~~~---~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 98 LERNLYLTLQLLEL---GIPCIVALNMLDIAE 126 (274)
T ss_dssp HHHHHHHHHHHHHH---TCCEEEEEECHHHHH
T ss_pred hHHHHHHHHHHHhc---CCCEEEEEECccchh
Confidence 22222333334443 689999999999853
No 42
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.77 E-value=3.1e-08 Score=94.29 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=44.8
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||.-. ...+...|+++.+.+ ++|.+++....- ..++..++.........+.|.||
T Consensus 55 ~~~~~~Dt~G~~~-------------~~~~~~~~~~~~~~~-i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK 120 (170)
T 1z0j_A 55 HKFLIWDTAGLER-------------FRALAPMYYRGSAAA-IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 120 (170)
T ss_dssp EEEEEEEECCSGG-------------GGGGTHHHHTTCSEE-EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEEC
T ss_pred EEEEEEcCCCchh-------------hhcccHhhCcCCCEE-EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 3589999999732 234556788888754 455555543222 23555666665556788999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 121 ~Dl~~ 125 (170)
T 1z0j_A 121 CDLTD 125 (170)
T ss_dssp TTCGG
T ss_pred Ccccc
Confidence 99954
No 43
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.77 E-value=2.1e-08 Score=104.61 Aligned_cols=125 Identities=17% Similarity=0.180 Sum_probs=70.4
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCcccccccc--cccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFNVREVE--MGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g--~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
-..|++||..|+|||||+|+|+|..+...+.. .+|+.+....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~------------------------------------ 64 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGS------------------------------------ 64 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEE------------------------------------
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEE------------------------------------
Confidence 34899999999999999999999876532211 1233321111
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE 216 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D 216 (822)
+.. +...++||||||++...... .+.....+..-+..+....+ ++|+|++++.
T Consensus 65 -----------------------~~~-~~~~i~liDTPG~~~~~~~~-~~~~~~~i~~~~~~~~~~~d-~il~V~d~~~- 117 (247)
T 3lxw_A 65 -----------------------RRW-DKCHVEVVDTPDIFSSQVSK-TDPGCEERGHCYLLSAPGPH-ALLLVTQLGR- 117 (247)
T ss_dssp -----------------------EEE-TTEEEEEEECCSCSSTTHHH-HSTTSHHHHHHHHHHTTCCS-EEEEEEETTB-
T ss_pred -----------------------EEE-CCcEEEEEECCCCCCCCCCc-HHHHHHHHHHHHHhcCCCCC-EEEEEEeCCC-
Confidence 111 12468999999997543211 01222222222233347777 6666677663
Q ss_pred cchH--HHHHHHHHh-CCC--CCcEEEEeeCCCcc
Q 003415 217 WCSS--LWLDAIREI-DPT--FRRTVIVVSKFDNR 246 (822)
Q Consensus 217 ~~nq--~il~lar~~-Dp~--g~RTIgViTK~D~~ 246 (822)
+... .+++.++++ .+. +...|.|.||.|+.
T Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~ 152 (247)
T 3lxw_A 118 FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLA 152 (247)
T ss_dssp CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcC
Confidence 4433 345555553 222 45678888899984
No 44
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.76 E-value=7.3e-08 Score=95.18 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=43.9
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCC---CCCcEEEE
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDP---TFRRTVIV 239 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp---~g~RTIgV 239 (822)
..+.|+||||.. ....+...|+++.+ ++++|+++++...-. .++..+....+ .+.+.|.|
T Consensus 73 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 138 (208)
T 2yc2_C 73 VELFLLDTAGSD-------------LYKEQISQYWNGVY-YAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV 138 (208)
T ss_dssp EEEEEEETTTTH-------------HHHHHHSTTCCCCC-EEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEE
T ss_pred EEEEEEECCCcH-------------HHHHHHHHHHhhCc-EEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEE
Confidence 468999999972 34567888999887 455556665433222 34555555544 57899999
Q ss_pred eeCCCcc
Q 003415 240 VSKFDNR 246 (822)
Q Consensus 240 iTK~D~~ 246 (822)
+||.|+.
T Consensus 139 ~nK~Dl~ 145 (208)
T 2yc2_C 139 ANKTDLP 145 (208)
T ss_dssp EECC---
T ss_pred EECcccc
Confidence 9999985
No 45
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.75 E-value=2e-08 Score=113.33 Aligned_cols=121 Identities=21% Similarity=0.285 Sum_probs=73.4
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCcccccccc-cccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHH
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFNVREVE-MGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIK 137 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g-~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~ 137 (822)
.|.|++||+.|+|||||+|+|+|..+..++.. .+||-
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d------------------------------------------ 40 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRD------------------------------------------ 40 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccc------------------------------------------
Confidence 58999999999999999999998765422110 01111
Q ss_pred HHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc
Q 003415 138 SRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW 217 (822)
Q Consensus 138 ~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~ 217 (822)
.+...++.. ...++|+||||+.... ....+.++.++..|++..+ +||+|+++....
T Consensus 41 -----------------~~~~~~~~~-~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~ad-~il~vvD~~~~~ 96 (436)
T 2hjg_A 41 -----------------RIYSSAEWL-NYDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEAD-VIIFMVNGREGV 96 (436)
T ss_dssp -----------------CEEEECTTC-SSCCEEEC--------------CHHHHHHHHHHHHHHHCS-EEEEEEETTTCS
T ss_pred -----------------eEEEEEEEC-CceEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCC-EEEEEEeCCCCC
Confidence 111111111 1468999999986431 2355678888999999888 666777777655
Q ss_pred chHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 218 CSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 218 ~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
...+ ..+++.+...+...|.|+||+|+.
T Consensus 97 ~~~d-~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 97 TAAD-EEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp CHHH-HHHHHHHTTCCSCEEEEEECCCC-
T ss_pred CHHH-HHHHHHHHHcCCCEEEEEECccCc
Confidence 4443 334444445678999999999985
No 46
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.74 E-value=1.2e-08 Score=98.18 Aligned_cols=67 Identities=21% Similarity=0.168 Sum_probs=42.0
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.+.|+||||.... ..+...|+++.+ ++++|++++....- ..++..+....+.+.+.|.|+||.
T Consensus 64 ~~~~~Dt~G~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 129 (179)
T 2y8e_A 64 RLQLWDTAGQERF-------------RSLIPSYIRDST-VAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 129 (179)
T ss_dssp EEEEEEECCSGGG-------------GGGSHHHHHTCS-EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECG
T ss_pred EEEEEECCCcHHH-------------HHHHHHHhcCCC-EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 5899999995321 234567777777 45556666532221 224444444444567899999999
Q ss_pred Cccc
Q 003415 244 DNRL 247 (822)
Q Consensus 244 D~~~ 247 (822)
|+..
T Consensus 130 Dl~~ 133 (179)
T 2y8e_A 130 DLSD 133 (179)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9854
No 47
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.74 E-value=4.8e-08 Score=92.44 Aligned_cols=67 Identities=13% Similarity=0.036 Sum_probs=41.0
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHH-HHHHhCCCCCcEEEEeeC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLD-AIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~-lar~~Dp~g~RTIgViTK 242 (822)
.+.|+|+||... ...+...|+++.+.+| +|.++++...-. .++. +.+.....+.+.|.|+||
T Consensus 53 ~~~l~D~~G~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 118 (168)
T 1u8z_A 53 QIDILDTAGQED-------------YAAIRDNYFRSGEGFL-CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118 (168)
T ss_dssp EEEEEECCC----------------CHHHHHHHHHHCSEEE-EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEEEEECCCcch-------------hHHHHHHHhhcCCEEE-EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEC
Confidence 688999999421 2456677888887555 455555322211 2333 333334457899999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 119 ~Dl~~ 123 (168)
T 1u8z_A 119 SDLED 123 (168)
T ss_dssp GGGGG
T ss_pred ccccc
Confidence 99953
No 48
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.74 E-value=1.1e-07 Score=95.59 Aligned_cols=66 Identities=26% Similarity=0.279 Sum_probs=45.7
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.+.|+||||.- ..+.+...|+++.+ ++++|.++++...- ..++..++...+.+...|.|.||.
T Consensus 76 ~l~l~Dt~G~~-------------~~~~~~~~~~~~~d-~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~ 141 (201)
T 2ew1_A 76 KLQIWDTAGQE-------------RFRSITQSYYRSAN-ALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 141 (201)
T ss_dssp EEEEEEECCSG-------------GGHHHHGGGSTTCS-EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEECCCcH-------------HHHHHHHHHHhcCC-EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 58899999942 23567788999888 45555565533221 345666666666678899999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 142 Dl~ 144 (201)
T 2ew1_A 142 DLA 144 (201)
T ss_dssp GGG
T ss_pred CCc
Confidence 985
No 49
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.74 E-value=5.1e-08 Score=94.09 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=42.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||.. ..+.+...|+++.+.+| +|++++....- ..++..+....+.+.+.|.|+||
T Consensus 60 ~~~~~~Dt~G~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 125 (180)
T 2g6b_A 60 VKLQMWDTAGQE-------------RFRSVTHAYYRDAHALL-LLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 125 (180)
T ss_dssp EEEEEEECCCC---------------------CCGGGCSEEE-EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEeCCCcH-------------HHHHHHHHHccCCCEEE-EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 368899999942 23456678888887554 55565543221 23556666665567899999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 126 ~Dl~~ 130 (180)
T 2g6b_A 126 VDSAH 130 (180)
T ss_dssp CSTTS
T ss_pred cccCc
Confidence 99954
No 50
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.73 E-value=1.1e-07 Score=94.76 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=43.1
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||... ...+...|+++.+.+ ++|+++++...- ..++..++.....+...|.|+||
T Consensus 74 ~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 139 (200)
T 2o52_A 74 VKLQIWDTAGQER-------------FRSVTRSYYRGAAGA-LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNK 139 (200)
T ss_dssp EEEEEECCTTHHH-------------HSCCCHHHHTTCSEE-EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEEC
T ss_pred eEEEEEcCCCcHh-------------HHHHHHHHhccCCEE-EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 4689999999532 233456788888744 555555533222 22444455544457889999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 140 ~Dl~ 143 (200)
T 2o52_A 140 KDLD 143 (200)
T ss_dssp GGGG
T ss_pred CCcc
Confidence 9984
No 51
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.73 E-value=3.4e-08 Score=94.19 Aligned_cols=84 Identities=19% Similarity=0.181 Sum_probs=45.8
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEeeCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.+.|+||||... ...+...|+++.+.+| +|+++++...-. .++..++...+.+.+.|.|+||.
T Consensus 56 ~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 121 (170)
T 1z08_A 56 NLAIWDTAGQER-------------FHALGPIYYRDSNGAI-LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121 (170)
T ss_dssp EEEEEECCCC--------------------CCSSTTCSEEE-EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECG
T ss_pred EEEEEECCCcHh-------------hhhhHHHHhccCCEEE-EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECc
Confidence 688999999421 2345567888887554 555555332211 24444555444567899999999
Q ss_pred CccccccccHHHHHHHhhhcC
Q 003415 244 DNRLKEFSDRWEVDRYLSASG 264 (822)
Q Consensus 244 D~~~~~~s~~~~v~~~l~~~G 264 (822)
|+.....-....+..+....|
T Consensus 122 Dl~~~~~~~~~~~~~~~~~~~ 142 (170)
T 1z08_A 122 DLEKERHVSIQEAESYAESVG 142 (170)
T ss_dssp GGGGGCCSCHHHHHHHHHHTT
T ss_pred ccccccccCHHHHHHHHHHcC
Confidence 995432222223444444333
No 52
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.73 E-value=1e-07 Score=93.55 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=43.9
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHH-HHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHH-HhCCCCCcEEEEe
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEIL-SMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIR-EIDPTFRRTVIVV 240 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~-~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar-~~Dp~g~RTIgVi 240 (822)
..+.|+||||.- ... .+...|+++.+ ++++|+++++...- ..++..+. .....+.+.|.|+
T Consensus 69 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~~d-~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 134 (189)
T 1z06_A 69 IKIQLWDTAGQE-------------RFRKSMVQHYYRNVH-AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 134 (189)
T ss_dssp EEEEEEECCCSH-------------HHHTTTHHHHHTTCC-EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEE
T ss_pred EEEEEEECCCch-------------hhhhhhhHHHhcCCC-EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 368999999942 233 66788998887 55556666532211 22344333 3335578899999
Q ss_pred eCCCccc
Q 003415 241 SKFDNRL 247 (822)
Q Consensus 241 TK~D~~~ 247 (822)
||.|+..
T Consensus 135 nK~Dl~~ 141 (189)
T 1z06_A 135 NKCDLRS 141 (189)
T ss_dssp ECTTCGG
T ss_pred ECccccc
Confidence 9999953
No 53
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.73 E-value=4.8e-08 Score=92.82 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=43.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH---HHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL---WLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~---il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||... ...+...|+++.+. +++|.++++...... ++..+......+.+.|.|+||
T Consensus 52 ~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 117 (170)
T 1ek0_A 52 VKFEIWDTAGQER-------------FASLAPXYYRNAQA-ALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNK 117 (170)
T ss_dssp EEEEEEEECCSGG-------------GGGGHHHHHTTCSE-EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEECCCChh-------------hhhhhhhhhccCcE-EEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 3589999999532 23456788888874 555566654322222 333344433446789999999
Q ss_pred CCcccc
Q 003415 243 FDNRLK 248 (822)
Q Consensus 243 ~D~~~~ 248 (822)
.|+...
T Consensus 118 ~Dl~~~ 123 (170)
T 1ek0_A 118 IDXLQE 123 (170)
T ss_dssp GGGGGS
T ss_pred CCcccc
Confidence 999643
No 54
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.71 E-value=6.9e-08 Score=93.23 Aligned_cols=85 Identities=12% Similarity=0.068 Sum_probs=49.9
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||... .+.+...|+++.+ ++++|++++....-. .++..+......+.+.|.|+||
T Consensus 61 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK 126 (181)
T 2efe_B 61 VKFEIWDTAGQER-------------YHSLAPMYYRGAA-AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNK 126 (181)
T ss_dssp EEEEEEECCCSGG-------------GGGGTHHHHTTCS-EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEeCCCChh-------------hhhhhHHHhccCC-EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 3689999999532 2334567888887 555566665433222 2444445444446789999999
Q ss_pred CCccccccccHHHHHHHhhhcC
Q 003415 243 FDNRLKEFSDRWEVDRYLSASG 264 (822)
Q Consensus 243 ~D~~~~~~s~~~~v~~~l~~~G 264 (822)
.|+.....-....+..+....|
T Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~~ 148 (181)
T 2efe_B 127 SDLLDARKVTAEDAQTYAQENG 148 (181)
T ss_dssp TTCTTTCCSCHHHHHHHHHHTT
T ss_pred CcccccccCCHHHHHHHHHHcC
Confidence 9995332222233444544433
No 55
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.71 E-value=3.8e-08 Score=97.33 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=46.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||.. ....+...|+++.+ ++++|+++++...- ..++..++...+.+...|.|+||
T Consensus 75 ~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d-~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK 140 (192)
T 2il1_A 75 IRLQIWDTAGQE-------------RFNSITSAYYRSAK-GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNK 140 (192)
T ss_dssp EEEEEEEECCSG-------------GGHHHHHHHHHHCS-EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEeCCCcH-------------HHHHHHHHHhcCCC-EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 368999999942 12456677888777 55556666543222 23556677776777899999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 141 ~Dl~~ 145 (192)
T 2il1_A 141 LDCET 145 (192)
T ss_dssp GGGGG
T ss_pred ccccc
Confidence 99853
No 56
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.71 E-value=2.1e-08 Score=95.37 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
...|+|+|+.++|||||+++|++..++
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~ 31 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFT 31 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 358999999999999999999987765
No 57
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.70 E-value=8e-08 Score=93.28 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=36.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||... ...+...|+++.+. +++|+++++...-. .++..+......+.+.|.|+||
T Consensus 57 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 122 (183)
T 2fu5_C 57 IKLQIWDTAGQER-------------FRTITTAYYRGAMG-IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122 (183)
T ss_dssp EEEEEEEC----------------------CCTTTTTCSE-EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEcCCCChh-------------hhhhHHHHHhcCCE-EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 4689999999532 23445678888874 55566665432212 2445555544456889999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 123 ~Dl~ 126 (183)
T 2fu5_C 123 CDVN 126 (183)
T ss_dssp --CC
T ss_pred ccCC
Confidence 9984
No 58
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.69 E-value=6.2e-08 Score=95.62 Aligned_cols=85 Identities=16% Similarity=0.117 Sum_probs=51.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||... ...+...|+++.+. +++|++++....- ..++..+++..+.+.+.|.|+||
T Consensus 72 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~-iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK 137 (192)
T 2fg5_A 72 HKFLIWDTAGQER-------------FHSLAPMYYRGSAA-AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNK 137 (192)
T ss_dssp EEEEEEEECCSGG-------------GGGGTHHHHTTCSE-EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEcCCCchh-------------hHhhhHHhhccCCE-EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 3689999999532 22345678888874 5555565533222 23555566666667899999999
Q ss_pred CCccccccccHHHHHHHhhhcC
Q 003415 243 FDNRLKEFSDRWEVDRYLSASG 264 (822)
Q Consensus 243 ~D~~~~~~s~~~~v~~~l~~~G 264 (822)
.|+..........+..+....|
T Consensus 138 ~Dl~~~~~v~~~~~~~~~~~~~ 159 (192)
T 2fg5_A 138 CDLSDIREVPLKDAKEYAESIG 159 (192)
T ss_dssp GGGGGGCCSCHHHHHHHHHTTT
T ss_pred cccccccccCHHHHHHHHHHcC
Confidence 9995322222223444544333
No 59
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.69 E-value=3.5e-08 Score=95.05 Aligned_cols=114 Identities=19% Similarity=0.263 Sum_probs=70.4
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIK 137 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~ 137 (822)
..+.|+|+|+.++|||||+++|++..|........|.- +.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~--------------------------~~-------------- 46 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQH--------------------------IG-------------- 46 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTT--------------------------CC--------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEe--------------------------ee--------------
Confidence 57899999999999999999999988763210000100 00
Q ss_pred HHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc
Q 003415 138 SRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW 217 (822)
Q Consensus 138 ~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~ 217 (822)
. ..+.+. ...+.|+||||...... +...|+...+ ++++|++++...
T Consensus 47 ---------------~--~~~~~~---~~~~~l~Dt~G~~~~~~-------------~~~~~~~~~d-~~i~v~d~~~~~ 92 (178)
T 2lkc_A 47 ---------------A--YQVTVN---DKKITFLDTPGHEAFTT-------------MRARGAQVTD-IVILVVAADDGV 92 (178)
T ss_dssp ---------------C--CEEEET---TEEEEESCCCSSSSSSC-------------SCCSSCCCCC-EEEEEEETTCCC
T ss_pred ---------------E--EEEEeC---CceEEEEECCCCHHHHH-------------HHHHHHhhCC-EEEEEEECCCCC
Confidence 0 011111 13568999999643211 2235677776 455555665443
Q ss_pred chHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 218 CSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 218 ~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
. ...+..++.+...+.+.|.|+||.|+.
T Consensus 93 ~-~~~~~~l~~~~~~~~p~ilv~nK~Dl~ 120 (178)
T 2lkc_A 93 M-PQTVEAINHAKAANVPIIVAINKMDKP 120 (178)
T ss_dssp C-HHHHHHHHHHGGGSCCEEEEEETTTSS
T ss_pred c-HHHHHHHHHHHhCCCCEEEEEECccCC
Confidence 3 334555566655578899999999995
No 60
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.69 E-value=1.9e-07 Score=90.53 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.7
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..|+|+|+.++|||||+++|++..|.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~ 30 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFV 30 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 37999999999999999999988765
No 61
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.69 E-value=4e-07 Score=89.87 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=26.5
Q ss_pred CCCCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 56 KLPIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 56 ~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
....+.|+|+|+.++||||||++|++..|.
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~ 40 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFV 40 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 345679999999999999999999988775
No 62
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.68 E-value=1.7e-08 Score=108.49 Aligned_cols=122 Identities=19% Similarity=0.253 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCccccccccc-ccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHH
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEM-GTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADI 135 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~-cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~ 135 (822)
+.-+.|++||+.++|||||+|+|+|..+...+... .||..+.-.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi----------------------------------- 50 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGI----------------------------------- 50 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEE-----------------------------------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEE-----------------------------------
Confidence 45568999999999999999999998764222111 122111000
Q ss_pred HHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCc-cccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCC
Q 003415 136 IKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFV-LKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSS 214 (822)
Q Consensus 136 I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~-~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~ 214 (822)
+.. +..+++|+||||+. .... ...+.+...+..+++..+ ++++|+++.
T Consensus 51 ------------------------~~~-~~~~i~~iDTpG~~~~~~~-----~l~~~~~~~~~~~l~~~D-~vl~Vvd~~ 99 (301)
T 1ega_A 51 ------------------------HTE-GAYQAIYVDTPGLHMEEKR-----AINRLMNKAASSSIGDVE-LVIFVVEGT 99 (301)
T ss_dssp ------------------------EEE-TTEEEEEESSSSCCHHHHH-----HHHHHHTCCTTSCCCCEE-EEEEEEETT
T ss_pred ------------------------EEE-CCeeEEEEECcCCCccchh-----hHHHHHHHHHHHHHhcCC-EEEEEEeCC
Confidence 000 12468999999986 2110 011122233456666666 677777776
Q ss_pred cccchHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 215 VEWCSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 215 ~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
. +...+ ..+++.+...+.+.|.|+||.|+.
T Consensus 100 ~-~~~~~-~~i~~~l~~~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 100 R-WTPDD-EMVLNKLREGKAPVILAVNKVDNV 129 (301)
T ss_dssp C-CCHHH-HHHHHHHHSSSSCEEEEEESTTTC
T ss_pred C-CCHHH-HHHHHHHHhcCCCEEEEEECcccC
Confidence 5 66554 234444444578899999999985
No 63
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.67 E-value=4.4e-08 Score=111.05 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=49.1
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHH-HHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSM-VKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~L-V~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
.++|+||||+.......... +....+ ...|++..+ ++|+|++++..+..++ ..++..+...+...|.|+||+|+
T Consensus 244 ~~~l~DT~G~~~~~~~~~~~---e~~~~~~~~~~~~~ad-~~llviD~~~~~~~~~-~~~~~~~~~~~~~~ilv~NK~Dl 318 (456)
T 4dcu_A 244 EFVIVDTAGMRKKGKVYETT---EKYSVLRALKAIDRSE-VVAVVLDGEEGIIEQD-KRIAGYAHEAGKAVVIVVNKWDA 318 (456)
T ss_dssp EEEETTGGGTTTBTTBCCCC---SHHHHHHHHHHHHHCS-EEEEEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGG
T ss_pred eEEEEECCCCCcCcccchHH---HHHHHHHHHHHHhhCC-EEEEEEeCCCCcCHHH-HHHHHHHHHcCCCEEEEEEChhc
Confidence 68999999998754332211 222222 235777776 6677788887766654 33333333357899999999999
Q ss_pred cc
Q 003415 246 RL 247 (822)
Q Consensus 246 ~~ 247 (822)
..
T Consensus 319 ~~ 320 (456)
T 4dcu_A 319 VD 320 (456)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 64
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.66 E-value=9.6e-08 Score=100.38 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=44.4
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhc--CCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLA--SPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yi--k~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~ 243 (822)
..+.|+||||...... ... -+.+...|+ ...+ +++.|+++++--.+ +.+..++-..+.+.|.|+||.
T Consensus 52 ~~~~l~DtpG~~~~~~----~~~---~e~v~~~~~~~~~~d-~ii~V~D~t~~~~~---~~~~~~l~~~~~pvilv~NK~ 120 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGY----SSI---DEKIARDYLLKGDAD-LVILVADSVNPEQS---LYLLLEILEMEKKVILAMTAI 120 (258)
T ss_dssp EEEEEEECCCCSSCCS----SSH---HHHHHHHHHHHSCCS-EEEEEEETTSCHHH---HHHHHHHHTTTCCEEEEEECH
T ss_pred eEEEEEECCCcCccCC----CCH---HHHHHHHHHhhcCCC-EEEEEeCCCchhhH---HHHHHHHHhcCCCEEEEEECc
Confidence 4789999999865422 111 134556676 4555 66677777643222 233334434478999999999
Q ss_pred Cccc
Q 003415 244 DNRL 247 (822)
Q Consensus 244 D~~~ 247 (822)
|+..
T Consensus 121 Dl~~ 124 (258)
T 3a1s_A 121 DEAK 124 (258)
T ss_dssp HHHH
T ss_pred CCCC
Confidence 9853
No 65
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.66 E-value=1.6e-07 Score=90.71 Aligned_cols=29 Identities=24% Similarity=0.372 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.....|+|+|+.++|||||+++|++..|+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~ 44 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFV 44 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC
Confidence 45568999999999999999999988775
No 66
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.66 E-value=1.2e-07 Score=91.33 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=43.4
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcC--CCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLAS--PPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik--~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~ 243 (822)
..+.++||||...... .. .-+.+...|+. +.+ +++.|++++..-....++..+++ .+...|.|.||.
T Consensus 50 ~~l~i~Dt~G~~~~~~----~~---~~~~~~~~~~~~~~~~-~~i~v~D~~~~~~~~~~~~~~~~---~~~p~ilv~nK~ 118 (165)
T 2wji_A 50 EKFKVVDLPGVYSLTA----NS---IDEIIARDYIINEKPD-LVVNIVDATALERNLYLTLQLME---MGANLLLALNKM 118 (165)
T ss_dssp EEEEEEECCCCSCSSS----SS---HHHHHHHHHHHHHCCS-EEEEEEETTCHHHHHHHHHHHHH---TTCCEEEEEECH
T ss_pred cEEEEEECCCcccCCC----cc---hhHHHHHHHHhcCCCC-EEEEEecCCchhHhHHHHHHHHh---cCCCEEEEEEch
Confidence 3689999999865321 11 23456677775 565 66777777642111223333333 367899999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 119 Dl~ 121 (165)
T 2wji_A 119 DLA 121 (165)
T ss_dssp HHH
T ss_pred Hhc
Confidence 984
No 67
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.66 E-value=8.1e-08 Score=90.76 Aligned_cols=67 Identities=18% Similarity=0.070 Sum_probs=41.3
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHH-HHHHHhCCCCCcEEEEeeC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWL-DAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il-~lar~~Dp~g~RTIgViTK 242 (822)
.+.|+||||... ...+...|+++.+.+| +|+++++...-. .++ .+.+.....+.+.|.|+||
T Consensus 52 ~~~l~D~~G~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 117 (167)
T 1kao_A 52 VLEILDTAGTEQ-------------FASMRDLYIKNGQGFI-LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNK 117 (167)
T ss_dssp EEEEEECCCTTC-------------CHHHHHHHHHHCSEEE-EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEEC
T ss_pred EEEEEECCCchh-------------hHHHHHHHhccCCEEE-EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 488999999421 1345667777777544 555554322211 122 3444445557899999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 118 ~Dl~~ 122 (167)
T 1kao_A 118 VDLES 122 (167)
T ss_dssp GGGGG
T ss_pred Ccccc
Confidence 99853
No 68
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.66 E-value=5.3e-08 Score=93.76 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
....|+|+|+.++|||||+++|++..|+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~ 34 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYS 34 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCC
Confidence 3568999999999999999999998775
No 69
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.65 E-value=1.4e-07 Score=93.70 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=44.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||.... +.+...|+...+ ++++|++++....-. .++..++...+...+.|.|+||
T Consensus 57 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d-~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 122 (206)
T 2bcg_Y 57 VKLQIWDTAGQERF-------------RTITSSYYRGSH-GIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK 122 (206)
T ss_dssp EEEEEECCTTTTTT-------------TCCCGGGGTTCS-EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEeCCChHHH-------------HHHHHHhccCCC-EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 36899999995322 123467888887 555566665433222 2455555555557889999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 123 ~Dl~~ 127 (206)
T 2bcg_Y 123 CDLKD 127 (206)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 99953
No 70
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.64 E-value=5.3e-08 Score=93.71 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..+.|+|+|+.++||||||++|++-.|.
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~ 33 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFD 33 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3468999999999999999999987765
No 71
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.63 E-value=1.5e-07 Score=89.27 Aligned_cols=68 Identities=13% Similarity=0.066 Sum_probs=42.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+|+||... ...+...|+++.+. +++|++++....-. .++..+..........|.|.||
T Consensus 55 ~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK 120 (170)
T 1r2q_A 55 VKFEIWDTAGQER-------------YHSLAPMYYRGAQA-AIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120 (170)
T ss_dssp EEEEEEEECCSGG-------------GGGGHHHHHTTCSE-EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEeCCCcHH-------------hhhhhHHhccCCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 3688999999532 23456778888874 45555655432222 2344444443345778888999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 121 ~Dl~~ 125 (170)
T 1r2q_A 121 ADLAN 125 (170)
T ss_dssp GGGGG
T ss_pred ccCcc
Confidence 99853
No 72
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.63 E-value=1.8e-07 Score=91.24 Aligned_cols=73 Identities=16% Similarity=0.121 Sum_probs=43.8
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHH-HHHHHHhcCCCCcEEEEEecCCccc--chHHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEI-LSMVKSLASPPHRILVFLQQSSVEW--CSSLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v-~~LV~~Yik~~~sIILaVv~A~~D~--~nq~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.+.|+||||+.... ...+.. -..+..|++..+ .+++|++++... ....++..+++..+.+.+.|.|+||+
T Consensus 53 ~~~l~Dt~G~~~~~------~~~~~~~~~~~~~~~~~ad-~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~ 125 (172)
T 2gj8_A 53 PLHIIDTAGLREAS------DEVERIGIERAWQEIEQAD-RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKA 125 (172)
T ss_dssp EEEEEECCCCSCCS------SHHHHHHHHHHHHHHHTCS-EEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECH
T ss_pred EEEEEECCCcccch------hHHHHHHHHHHHHHHHhCC-EEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECc
Confidence 47899999985421 111111 111335677777 556666665332 23345555665555678899999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 126 Dl~ 128 (172)
T 2gj8_A 126 DIT 128 (172)
T ss_dssp HHH
T ss_pred cCC
Confidence 984
No 73
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.62 E-value=1.5e-07 Score=99.05 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..+.|+++|++|+|||||+++|+|..+.
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~ 29 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQH 29 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 4678999999999999999999998774
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.61 E-value=1.2e-07 Score=89.21 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.6
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..|+|+|+.++|||||+++|++..+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~ 29 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV 29 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc
Confidence 37999999999999999999988765
No 75
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.61 E-value=1e-07 Score=93.60 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=24.6
Q ss_pred CCCCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 56 KLPIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 56 ~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
....+.|+|+|+.++||||||++|++..|.
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~ 43 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSS 43 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC--
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCc
Confidence 346679999999999999999999998876
No 76
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.60 E-value=2.8e-07 Score=89.98 Aligned_cols=28 Identities=32% Similarity=0.403 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
....|+|+|+.++||||||++|++..|.
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~ 41 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFD 41 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3458999999999999999999998876
No 77
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.60 E-value=1.2e-07 Score=106.74 Aligned_cols=125 Identities=20% Similarity=0.202 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
..+.|+|||+.++|||||+++|+|..+...+. ...||-
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d----------------------------------------- 212 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRD----------------------------------------- 212 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-------------------------------------------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceee-----------------------------------------
Confidence 46799999999999999999999986531110 000110
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHH-HHHhcCCCCcEEEEEecCCc
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSM-VKSLASPPHRILVFLQQSSV 215 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~L-V~~Yik~~~sIILaVv~A~~ 215 (822)
.+...++..+ ..++|+||||+....... +..+....+ ...|++..+ ++|+|++++.
T Consensus 213 ------------------~~~~~~~~~~-~~~~l~DT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad-~~llv~D~~~ 269 (436)
T 2hjg_A 213 ------------------AVDTSFTYNQ-QEFVIVDTAGMRKKGKVY---ETTEKYSVLRALKAIDRSE-VVAVVLDGEE 269 (436)
T ss_dssp -------------------CCEEEEETT-EEEEETTHHHHTCBTTBC---CCCSHHHHHHHHHHHHHCS-EEEEEEETTT
T ss_pred ------------------eeEEEEEECC-eEEEEEECCCcCcCcccc---chHHHHHHHHHHHHHHhCC-EEEEEEcCCc
Confidence 0111111111 248999999986644321 112222222 235777776 7777788887
Q ss_pred ccchHHHHHHHHHhCCCCCcEEEEeeCCCccc
Q 003415 216 EWCSSLWLDAIREIDPTFRRTVIVVSKFDNRL 247 (822)
Q Consensus 216 D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~ 247 (822)
.+..++ ++++..+...+...|.|+||+|+..
T Consensus 270 ~~s~~~-~~~~~~~~~~~~~iiiv~NK~Dl~~ 300 (436)
T 2hjg_A 270 GIIEQD-KRIAGYAHEAGKAVVIVVNKWDAVD 300 (436)
T ss_dssp CCCHHH-HHHHHHHHHTTCEEEEEEECGGGSC
T ss_pred CCcHHH-HHHHHHHHHcCCcEEEEEECccCCC
Confidence 666665 2444444445789999999999963
No 78
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.60 E-value=2.4e-07 Score=102.45 Aligned_cols=123 Identities=23% Similarity=0.326 Sum_probs=74.6
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIK 137 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~ 137 (822)
.+|.|++||..|+||||||++|+|..+++.+.-..|+-|
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~----------------------------------------- 216 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSP----------------------------------------- 216 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCS-----------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCC-----------------------------------------
Confidence 578899999999999999999999876422211112211
Q ss_pred HHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc
Q 003415 138 SRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW 217 (822)
Q Consensus 138 ~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~ 217 (822)
..-.|..++ ..+.++||||++... +.+..+.++... .++...+ ++|.|++++...
T Consensus 217 ------------------~~~~i~~~g-~~v~l~DT~G~i~~l----p~~lve~f~~tl-~~~~~aD-~il~VvD~s~~~ 271 (364)
T 2qtf_A 217 ------------------KRYAIPINN-RKIMLVDTVGFIRGI----PPQIVDAFFVTL-SEAKYSD-ALILVIDSTFSE 271 (364)
T ss_dssp ------------------CEEEEEETT-EEEEEEECCCBCSSC----CGGGHHHHHHHH-HGGGGSS-EEEEEEETTSCH
T ss_pred ------------------EEEEEEECC-EEEEEEeCCCchhcC----CHHHHHHHHHHH-HHHHhCC-EEEEEEECCCCc
Confidence 111122222 357899999987532 234455555554 4566666 667777766433
Q ss_pred ---ch--HHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 218 ---CS--SLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 218 ---~n--q~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
.. ..+.++.+++.....+.|.|.||+|+.
T Consensus 272 ~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 272 NLLIETLQSSFEILREIGVSGKPILVTLNKIDKI 305 (364)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGC
T ss_pred chHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCC
Confidence 11 124566677765678899999999985
No 79
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.60 E-value=2.1e-07 Score=89.19 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+.|+|+|+.++|||||+++|+|..+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~ 30 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQER 30 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC---
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCc
Confidence 468999999999999999999998775
No 80
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.59 E-value=1.6e-07 Score=89.30 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
...|+|+|+.++|||||+++|+|..+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~ 28 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG 28 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC---
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc
Confidence 458999999999999999999987764
No 81
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.59 E-value=1.6e-07 Score=93.30 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=25.5
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
....|+|+|+.++||||||++|++..|.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~ 50 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS 50 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence 4568999999999999999999998876
No 82
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.59 E-value=3.1e-07 Score=87.03 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=23.5
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..|+|+|+.++|||||+++|++-.|+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~ 29 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV 29 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 37999999999999999999987765
No 83
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.58 E-value=6.3e-08 Score=96.11 Aligned_cols=67 Identities=24% Similarity=0.258 Sum_probs=42.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||... ...+...|+++.+. +++|+++++...- ..++..++.....+.+.|.|+||
T Consensus 77 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~-iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK 142 (199)
T 2p5s_A 77 TVLQLWDTAGQER-------------FRSIAKSYFRKADG-VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNK 142 (199)
T ss_dssp EEEEEEECTTCTT-------------CHHHHHHHHHHCSE-EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEEC
T ss_pred EEEEEEECCCCcc-------------hhhhHHHHHhhCCE-EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 3589999999421 23466778887774 5555565533221 23555666665557889999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 143 ~Dl~ 146 (199)
T 2p5s_A 143 ADIR 146 (199)
T ss_dssp GGGH
T ss_pred cccc
Confidence 9984
No 84
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.58 E-value=3.6e-07 Score=86.69 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=42.9
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHH----HHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLD----AIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~----lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||... .+.+...|+++.+.+| +|+++++.-.-..+.. +.+.....+.+.|.|+|
T Consensus 44 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 109 (164)
T 1r8s_A 44 ISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLI-FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 109 (164)
T ss_dssp CEEEEEECCCCGG-------------GHHHHHHHTTTCSEEE-EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred EEEEEEEcCCChh-------------hHHHHHHHhccCCEEE-EEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEE
Confidence 5689999999732 3567788999888555 5566654322222222 22222334688999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 110 K~Dl~ 114 (164)
T 1r8s_A 110 KQDLP 114 (164)
T ss_dssp CTTST
T ss_pred CcCCc
Confidence 99994
No 85
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.58 E-value=2.4e-07 Score=89.14 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
....|+|+|+.++|||||+++|++..|+
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~ 32 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG 32 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC
Confidence 3458999999999999999999988775
No 86
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.57 E-value=2.4e-07 Score=88.11 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.7
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..|+|+|+.++|||||+++|++-.|+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~ 29 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFR 29 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 47999999999999999999997765
No 87
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.57 E-value=1.7e-07 Score=94.06 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=43.6
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||..... .+...|+.+.+ ++++|+++++.... ..++..++...+.+.+.|.|+||
T Consensus 61 ~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 126 (218)
T 4djt_A 61 IKFNVWDTAGQEKKA-------------VLKDVYYIGAS-GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANK 126 (218)
T ss_dssp EEEEEEEECSGGGTS-------------CCCHHHHTTCS-EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEEC
T ss_pred EEEEEEecCCchhhc-------------hHHHHHhhcCC-EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 358899999964321 12356777777 45555666543322 23556666665667899999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 127 ~Dl~~ 131 (218)
T 4djt_A 127 IDIKN 131 (218)
T ss_dssp TTCC-
T ss_pred CCCcc
Confidence 99853
No 88
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.56 E-value=3.2e-07 Score=89.98 Aligned_cols=30 Identities=33% Similarity=0.349 Sum_probs=26.5
Q ss_pred CCCCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 56 KLPIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 56 ~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.-..+.|+|+|+.++|||||+++|++..++
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~ 74 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVR 74 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 456789999999999999999999998875
No 89
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.56 E-value=4e-07 Score=89.46 Aligned_cols=67 Identities=10% Similarity=0.022 Sum_probs=42.9
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHH----HHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWL----DAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il----~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||.. ....+...|+++.+. +++|+++++.-.-..+. .+.+.....+.+.|.|+|
T Consensus 67 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~-ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 132 (188)
T 1zd9_A 67 VTIKLWDIGGQP-------------RFRSMWERYCRGVSA-IVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 132 (188)
T ss_dssp EEEEEEEECCSH-------------HHHTTHHHHHTTCSE-EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEE
T ss_pred EEEEEEECCCCH-------------hHHHHHHHHHccCCE-EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEE
Confidence 468899999952 345567888988885 55556665432222222 233322235688999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 133 K~Dl~ 137 (188)
T 1zd9_A 133 KRDLP 137 (188)
T ss_dssp CTTST
T ss_pred CCCCc
Confidence 99995
No 90
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.55 E-value=3.4e-07 Score=88.67 Aligned_cols=27 Identities=37% Similarity=0.338 Sum_probs=24.0
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+.|+|+|+.++|||||+++|++-.|.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~ 32 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFV 32 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 468999999999999999999976665
No 91
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.55 E-value=1.1e-07 Score=105.71 Aligned_cols=120 Identities=19% Similarity=0.215 Sum_probs=74.7
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHH
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKS 138 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~ 138 (822)
.++|++||.+|+|||||+|+|+|....+.+--.||+-|+.=.+..
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~----------------------------------- 116 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY----------------------------------- 116 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE-----------------------------------
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEe-----------------------------------
Confidence 479999999999999999999998754333334677664322111
Q ss_pred HHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccc
Q 003415 139 RTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWC 218 (822)
Q Consensus 139 a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~ 218 (822)
+ -..+.||||||++..+..+ ...... +.+.+++.+ +||.|+++++.+.
T Consensus 117 ------------------------~-~~~i~l~D~pGl~~~a~~~--~~~g~~----~l~~i~~ad-~il~vvD~~~p~~ 164 (376)
T 4a9a_A 117 ------------------------K-GAKIQMLDLPGIIDGAKDG--RGRGKQ----VIAVARTCN-LLFIILDVNKPLH 164 (376)
T ss_dssp ------------------------T-TEEEEEEECGGGCCC-------CHHHH----HHHHHHHCS-EEEEEEETTSHHH
T ss_pred ------------------------C-CcEEEEEeCCCccCCchhh--hHHHHH----HHHHHHhcC-ccccccccCccHH
Confidence 0 1246899999998765432 222222 233444455 8888899886554
Q ss_pred hHHH-HHHHHHhCC--CCCcEEEEeeCCCc
Q 003415 219 SSLW-LDAIREIDP--TFRRTVIVVSKFDN 245 (822)
Q Consensus 219 nq~i-l~lar~~Dp--~g~RTIgViTK~D~ 245 (822)
.-++ ......++. ...+.+.|++|.|+
T Consensus 165 ~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 165 HKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred HHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 4332 233344443 24677889999997
No 92
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.55 E-value=4.3e-07 Score=90.56 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=45.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||.. ..+.+...|+++.+.+| +|+++++...- ..++..++...+.....|.|.||
T Consensus 78 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~ii-lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK 143 (201)
T 2hup_A 78 VKLQIWDTAGQE-------------RFRTITQSYYRSANGAI-LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNK 143 (201)
T ss_dssp EEEEEECCTTCG-------------GGHHHHHHHHTTCSEEE-EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEECCCcH-------------hHHHHHHHHHhhCCEEE-EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 368999999952 23456788999888554 55565532221 23555555555556889999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 144 ~Dl~~ 148 (201)
T 2hup_A 144 SDLSE 148 (201)
T ss_dssp TTCGG
T ss_pred Ccccc
Confidence 99953
No 93
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.54 E-value=2.7e-07 Score=97.88 Aligned_cols=70 Identities=13% Similarity=0.052 Sum_probs=43.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcC--CCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLAS--PPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik--~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~ 243 (822)
..+.|+||||...-.. .. .-+.+...|+. +++ +++.|+++++--.+ +.+..++...+.+.|.|+||+
T Consensus 49 ~~l~l~DtpG~~~~~~----~~---~~e~v~~~~~~~~~~d-~vi~V~D~t~~e~~---~~~~~~l~~~~~p~ilv~NK~ 117 (272)
T 3b1v_A 49 KDLEIQDLPGIYSMSP----YS---PEAKVARDYLLSQRAD-SILNVVDATNLERN---LYLTTQLIETGIPVTIALNMI 117 (272)
T ss_dssp TTEEEEECCCCSCSSC----SS---HHHHHHHHHHHTTCCS-EEEEEEEGGGHHHH---HHHHHHHHHTCSCEEEEEECH
T ss_pred CeEEEEECCCcCccCC----CC---hHHHHHHHHHhcCCCC-EEEEEecCCchHhH---HHHHHHHHhcCCCEEEEEECh
Confidence 5789999999865321 11 12445667775 455 66777777642222 223233322478999999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 118 Dl~ 120 (272)
T 3b1v_A 118 DVL 120 (272)
T ss_dssp HHH
T ss_pred hhC
Confidence 985
No 94
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.54 E-value=3.1e-07 Score=93.01 Aligned_cols=68 Identities=16% Similarity=0.060 Sum_probs=41.9
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||.... ..+...|++..+ ++++|++++....-. .++..++...+.+...|.|+||
T Consensus 62 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d-~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK 127 (223)
T 3cpj_B 62 IKAQIWDTAGQERY-------------RAITSAYYRGAV-GALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNK 127 (223)
T ss_dssp EEEEEECCTTTTTT-------------TCCCGGGTTTCC-EEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECC
T ss_pred EEEEEEECCCccch-------------hhhHHHHhccCC-EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 36899999995321 223467888777 455566665433322 2455555554557889999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 128 ~Dl~~ 132 (223)
T 3cpj_B 128 SDLAH 132 (223)
T ss_dssp GGGGG
T ss_pred ccccc
Confidence 99953
No 95
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.52 E-value=1.4e-06 Score=95.61 Aligned_cols=123 Identities=22% Similarity=0.223 Sum_probs=73.0
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHH
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADI 135 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~ 135 (822)
...+.|+|||..++||||||++|+|..+. .+. ...|+.+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~-~~~~~~~t~~~~-------------------------------------- 205 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE-IASYPFTTRGIN-------------------------------------- 205 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE-EECCTTCSSCEE--------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCeeecee--------------------------------------
Confidence 46789999999999999999999997643 111 11121110
Q ss_pred HHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc
Q 003415 136 IKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV 215 (822)
Q Consensus 136 I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~ 215 (822)
...+.. ....+.|+||||+...... .........+..+....+ .+|+|+|++.
T Consensus 206 ---------------------~~~~~~-~~~~~~l~Dt~G~~~~~~~----~~~~~~~~~~~~~~~~ad-~illV~D~s~ 258 (357)
T 2e87_A 206 ---------------------VGQFED-GYFRYQIIDTPGLLDRPIS----ERNEIEKQAILALRYLGN-LIIYIFDPSE 258 (357)
T ss_dssp ---------------------EEEEEE-TTEEEEEEECTTTSSSCST----TSCHHHHHHHHGGGGTCS-EEEEEECTTC
T ss_pred ---------------------EEEEEe-cCceEEEEeCCCccccchh----hhhHHHHHHHHHHHhcCC-EEEEEEeCCc
Confidence 000111 1236899999999764321 111111234444544455 6677777654
Q ss_pred ----ccchH-HHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 216 ----EWCSS-LWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 216 ----D~~nq-~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
++.++ .++..+...-+ +..+|.|+||.|+.
T Consensus 259 ~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 259 HCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred cccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 33332 35555554433 68899999999985
No 96
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.52 E-value=4e-07 Score=91.00 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..+.|+|+|+.++|||||+++|++-.|+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~ 33 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR 33 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 4579999999999999999999998876
No 97
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.52 E-value=3.6e-07 Score=88.99 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=25.8
Q ss_pred CCCCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 56 KLPIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 56 ~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
....+.|+|||+.++|||||+++|+|..+.
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~ 33 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVY 33 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 345578999999999999999999997654
No 98
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.50 E-value=1.4e-07 Score=93.39 Aligned_cols=28 Identities=25% Similarity=0.527 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
....|+|+|+.++||||||++|++..|.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~ 34 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS 34 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 3468999999999999999999998876
No 99
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.49 E-value=8.8e-07 Score=85.88 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.....|+|+|+.++|||||+++|++..|+
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~ 44 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFV 44 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 34558899999999999999999987765
No 100
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.49 E-value=7.5e-07 Score=86.73 Aligned_cols=67 Identities=16% Similarity=0.038 Sum_probs=43.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHH----HHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLW----LDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~i----l~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||.. ..+.+...|+++.+ ++++|+++++...-..+ ..+.+.....+.+.|.|+|
T Consensus 62 ~~~~~~Dt~G~~-------------~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 127 (186)
T 1ksh_A 62 FKLNIWDVGGQK-------------SLRSYWRNYFESTD-GLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFAN 127 (186)
T ss_dssp EEEEEEEECCSH-------------HHHTTGGGGCTTCS-EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred EEEEEEECCCCH-------------hHHHHHHHHhcCCC-EEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEe
Confidence 468999999973 23455678888888 45556666543322222 2233322334688999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 128 K~Dl~ 132 (186)
T 1ksh_A 128 KQDLP 132 (186)
T ss_dssp CTTST
T ss_pred CccCC
Confidence 99984
No 101
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.49 E-value=4.9e-07 Score=86.20 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
+..|+|+|+.++|||||+++|++..+.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~ 28 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGD 28 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC---
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCc
Confidence 458999999999999999999987765
No 102
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.48 E-value=1.8e-07 Score=106.90 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=38.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHH-HHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEI-LSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v-~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViT 241 (822)
..++|+||||+.... +..+.+ -.....|+++.+ ++|+|++++.....+ .+..+.+.+. +.+.|.|+|
T Consensus 281 ~~l~liDT~G~~~~~------~~ve~~gi~~~~~~~~~aD-~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~N 351 (476)
T 3gee_A 281 TMFRLTDTAGLREAG------EEIEHEGIRRSRMKMAEAD-LILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVAN 351 (476)
T ss_dssp EEEEEEC--------------------------CCCSSCS-EEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEE
T ss_pred eEEEEEECCCCCcch------hHHHHHHHHHHHhhcccCC-EEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEE
Confidence 369999999985421 111111 123456788887 667777777554432 4455666664 688999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 352 K~Dl~ 356 (476)
T 3gee_A 352 KLDRA 356 (476)
T ss_dssp CTTSC
T ss_pred CcCCC
Confidence 99985
No 103
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.48 E-value=6.2e-07 Score=85.48 Aligned_cols=67 Identities=12% Similarity=0.091 Sum_probs=42.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH----HHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL----WLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~----il~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||.... +.+...|+++.+ .+++|++++..-.-.. +..+.+.....+.+.|.|+|
T Consensus 51 ~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 116 (171)
T 1upt_A 51 LKFQVWDLGGLTSI-------------RPYWRCYYSNTD-AVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFAN 116 (171)
T ss_dssp EEEEEEEECCCGGG-------------GGGGGGGCTTCS-EEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred EEEEEEECCCChhh-------------hHHHHHHhccCC-EEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEE
Confidence 46899999996422 234567888887 5555666654322222 22333333335789999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 117 K~Dl~ 121 (171)
T 1upt_A 117 KQDME 121 (171)
T ss_dssp CTTST
T ss_pred CCCCc
Confidence 99985
No 104
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.48 E-value=3.9e-07 Score=88.82 Aligned_cols=67 Identities=13% Similarity=0.033 Sum_probs=42.6
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHH----HHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWL----DAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il----~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||.... +.+...|+++.+ ++++|+++++...-..+. .+.+.....+.+.|.|+|
T Consensus 65 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d-~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 130 (181)
T 2h17_A 65 TRFLMWDIGGQESL-------------RSSWNTYYTNTE-FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 130 (181)
T ss_dssp EEEEEEEESSSGGG-------------TCGGGGGGTTCC-EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred EEEEEEECCCCHhH-------------HHHHHHHhccCC-EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEE
Confidence 56899999997432 234567888887 555666666442222222 222222235788999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 131 K~Dl~ 135 (181)
T 2h17_A 131 KQDVK 135 (181)
T ss_dssp CTTST
T ss_pred CCCcc
Confidence 99984
No 105
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.48 E-value=2.8e-07 Score=91.84 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=24.1
Q ss_pred CCCCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 56 KLPIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 56 ~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
......|+|+|+.++|||||+++|++-.|.
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~ 51 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLG 51 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC---
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345669999999999999999999987664
No 106
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.47 E-value=4.4e-07 Score=88.80 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=40.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHH---H-HHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLW---L-DAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~i---l-~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||... .+.+...|+++.+ ++++|+++++.-.-..+ + .+.+.....+.+.|.|+|
T Consensus 60 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 125 (187)
T 1zj6_A 60 TRFLMWDIGGQES-------------LRSSWNTYYTNTE-FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 125 (187)
T ss_dssp EEEEEEECCC-----------------CGGGHHHHTTCC-EEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred EEEEEEECCCCHh-------------HHHHHHHHhcCCC-EEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEE
Confidence 5689999999732 2234567888887 55556666543222222 2 222222235789999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 126 K~Dl~ 130 (187)
T 1zj6_A 126 KQDVK 130 (187)
T ss_dssp CTTST
T ss_pred CCCCc
Confidence 99995
No 107
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.45 E-value=1e-06 Score=87.31 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=68.8
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIK 137 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~ 137 (822)
....|+|||+.++||||||+.|+|.-.+ .. |-
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~~----~~------------------------------------------- 50 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSP-NE----TL------------------------------------------- 50 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCG-GG----GG-------------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCC-cc----ee-------------------------------------------
Confidence 4569999999999999999999984222 10 00
Q ss_pred HHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHH---HHhcCCCCcEEEEEecCC
Q 003415 138 SRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMV---KSLASPPHRILVFLQQSS 214 (822)
Q Consensus 138 ~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV---~~Yik~~~sIILaVv~A~ 214 (822)
+..+....+.+.+.......|.|+||||.-.-. .+. ..|+++.+. +++|.+++
T Consensus 51 ----------~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------------~~~~~~~~~~~~~~~-~i~v~d~~ 106 (196)
T 3llu_A 51 ----------FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFF-------------DPTFDYEMIFRGTGA-LIYVIDAQ 106 (196)
T ss_dssp ----------GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTT-------------CTTCCHHHHHHTCSE-EEEEEETT
T ss_pred ----------eeccccceeeeeccCCCeeEEEEEECCCCHHHH-------------hhhhhcccccccCCE-EEEEEECC
Confidence 001111112223322234689999999953211 122 567777774 45566666
Q ss_pred cccch--HHHHHHHHHh--CCCCCcEEEEeeCCCcc
Q 003415 215 VEWCS--SLWLDAIREI--DPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 215 ~D~~n--q~il~lar~~--Dp~g~RTIgViTK~D~~ 246 (822)
+.+.. ..+..++.++ ...+...|.|.||.|+.
T Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 107 DDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred CchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence 54211 2233344433 23468999999999985
No 108
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.45 E-value=3.4e-07 Score=91.78 Aligned_cols=29 Identities=34% Similarity=0.374 Sum_probs=26.5
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-..|.|+|+|+.++|||||+++|++..|+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~ 38 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVR 38 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46789999999999999999999998875
No 109
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.44 E-value=5.9e-07 Score=88.71 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
....|+|+|+.++|||||+++|++..|.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~ 54 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI 54 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 4568999999999999999999998775
No 110
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.44 E-value=5.4e-07 Score=87.11 Aligned_cols=65 Identities=18% Similarity=0.110 Sum_probs=42.9
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc--chH--HHHHHHHHhCCCCCcEEEEeeC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW--CSS--LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~--~nq--~il~lar~~Dp~g~RTIgViTK 242 (822)
.+.|+||||.... +.+...|+++.+. +++|.++++.. .+. .++..+++..+ +.+.|.|+||
T Consensus 54 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK 118 (186)
T 1mh1_A 54 NLGLWDTAGQEDY-------------DRLRPLSYPQTDV-SLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTK 118 (186)
T ss_dssp EEEEECCCCSGGG-------------TTTGGGGCTTCSE-EEEEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEEC
T ss_pred EEEEEECCCCHhH-------------HHHHHHhccCCcE-EEEEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEc
Confidence 5789999997432 2344668888874 45555655332 222 25566666655 6889999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 119 ~Dl~ 122 (186)
T 1mh1_A 119 LDLR 122 (186)
T ss_dssp HHHH
T ss_pred cccc
Confidence 9985
No 111
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.43 E-value=2.8e-07 Score=90.45 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=41.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH---H-HHHHHHhCC--CCCcEEEE
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL---W-LDAIREIDP--TFRRTVIV 239 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~---i-l~lar~~Dp--~g~RTIgV 239 (822)
..+.|+||||... .+.+...|+++.+ ++++|+++++.-.-.. + ..+.+.... .+...|.|
T Consensus 67 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv 132 (190)
T 2h57_A 67 LSFTVFDMSGQGR-------------YRNLWEHYYKEGQ-AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFF 132 (190)
T ss_dssp CEEEEEEECCSTT-------------TGGGGGGGGGGCS-EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEE
T ss_pred EEEEEEECCCCHH-------------HHHHHHHHHhcCC-EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEE
Confidence 5789999999532 1234567888887 5555666664322122 2 223333222 46889999
Q ss_pred eeCCCcc
Q 003415 240 VSKFDNR 246 (822)
Q Consensus 240 iTK~D~~ 246 (822)
+||.|+.
T Consensus 133 ~nK~Dl~ 139 (190)
T 2h57_A 133 ANKMDLR 139 (190)
T ss_dssp EECTTST
T ss_pred EeCcCcc
Confidence 9999995
No 112
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.43 E-value=5.1e-07 Score=101.73 Aligned_cols=122 Identities=20% Similarity=0.223 Sum_probs=73.0
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIK 137 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~ 137 (822)
..+.|+|+|+.++|||||+++|+|..+...+ ..|
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-----~~~----------------------------------------- 66 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-----DYA----------------------------------------- 66 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC--------------------------------------------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccC-----CCC-----------------------------------------
Confidence 5679999999999999999999998764221 000
Q ss_pred HHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc
Q 003415 138 SRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW 217 (822)
Q Consensus 138 ~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~ 217 (822)
+.+.++....++......+.|+||||+......+ ... ++. ...|+.+.+ ++|+|+++...-
T Consensus 67 ------------gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~--~~~---~~~-~~~~l~~aD-~vllVvD~~~~~ 127 (423)
T 3qq5_A 67 ------------GTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELG--RLR---VEK-ARRVFYRAD-CGILVTDSAPTP 127 (423)
T ss_dssp ---------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTC--CCC---HHH-HHHHHTSCS-EEEEECSSSCCH
T ss_pred ------------CeeeeeEEEEEEECCCCeEEEEECcCCCcccchh--HHH---HHH-HHHHHhcCC-EEEEEEeCCChH
Confidence 0000112223333333478999999997543211 111 222 456777777 566666774333
Q ss_pred chHHHHHHHHHhCCCCCcEEEEeeCCCccc
Q 003415 218 CSSLWLDAIREIDPTFRRTVIVVSKFDNRL 247 (822)
Q Consensus 218 ~nq~il~lar~~Dp~g~RTIgViTK~D~~~ 247 (822)
....++..+++. +.+.|.|+||.|+..
T Consensus 128 ~~~~~l~~l~~~---~~piIvV~NK~Dl~~ 154 (423)
T 3qq5_A 128 YEDDVVNLFKEM---EIPFVVVVNKIDVLG 154 (423)
T ss_dssp HHHHHHHHHHHT---TCCEEEECCCCTTTT
T ss_pred HHHHHHHHHHhc---CCCEEEEEeCcCCCC
Confidence 334466667665 678999999999953
No 113
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.41 E-value=1.9e-06 Score=99.45 Aligned_cols=149 Identities=16% Similarity=0.207 Sum_probs=82.6
Q ss_pred chhhhHHHHHHHHHHHHHhcC--CCCCCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCc
Q 003415 34 STRASRFEAYNRLQAAAVAFG--EKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPR 111 (822)
Q Consensus 34 ~~~~~Lld~id~Lr~~g~~~~--~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~ 111 (822)
.+-..+++-+..|......-+ ....-..|++||+.|+|||||+++|+|-.|.... .-|--. .+.....+.
T Consensus 14 ~g~~~i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~--~~t~g~-~~~~~~~~~----- 85 (535)
T 3dpu_A 14 QGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKE--SQTHGL-NVVTKQAPN----- 85 (535)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC-------------CC-CEEEEEGGG-----
T ss_pred hCHHHHHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccce-EEEEecccc-----
Confidence 455667777777766322101 2445568999999999999999999998875211 001000 000000000
Q ss_pred cccccCCccccCCcccchhhHHHHHHHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHH
Q 003415 112 CRFQEEDSEEYGSPVVLASAIADIIKSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDE 191 (822)
Q Consensus 112 ~~i~~~~~~ef~~~~~~~~~l~~~I~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~ 191 (822)
.+ . + .+..+ -....++|+||||.-..
T Consensus 86 ----------~~----------~-v-------------~~~~~--------~~~~~~~i~Dt~G~e~~------------ 111 (535)
T 3dpu_A 86 ----------IK----------G-L-------------ENDDE--------LKECLFHFWDFGGQEIM------------ 111 (535)
T ss_dssp ----------SG----------G-G-------------TTCST--------TTTCEEEEECCCSCCTT------------
T ss_pred ----------cc----------c-e-------------eecCC--------CceEEEEEEECCcHHHH------------
Confidence 00 0 0 00000 01256899999993211
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCccc
Q 003415 192 ILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRL 247 (822)
Q Consensus 192 v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~ 247 (822)
..+...|+++.+ +++.|++++..-....|+..++...+ ..+.|.|.||.|+..
T Consensus 112 -~~~~~~~l~~~d-~ii~V~D~s~~~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 112 -HASHQFFMTRSS-VYMLLLDSRTDSNKHYWLRHIEKYGG-KSPVIVVMNKIDENP 164 (535)
T ss_dssp -TTTCHHHHHSSE-EEEEEECGGGGGGHHHHHHHHHHHSS-SCCEEEEECCTTTCT
T ss_pred -HHHHHHHccCCc-EEEEEEeCCCchhHHHHHHHHHHhCC-CCCEEEEEECCCccc
Confidence 112345666655 77777787755444567777787766 578999999999853
No 114
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.41 E-value=1.8e-07 Score=107.22 Aligned_cols=118 Identities=21% Similarity=0.182 Sum_probs=70.5
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHH
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKS 138 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~ 138 (822)
+.|++||.+|+|||||||+|+|..++.... ...||-+++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~---------------------------------------- 283 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVIS---------------------------------------- 283 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCC----------------------------------------
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEE----------------------------------------
Confidence 589999999999999999999986542221 111221100
Q ss_pred HHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCc-cccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc
Q 003415 139 RTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFV-LKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW 217 (822)
Q Consensus 139 a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~-~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~ 217 (822)
-.+.+. ...++|+||||+. ...... +.. -+ .....|+++.+ ++|+|++++...
T Consensus 284 -----------------~~i~~~---g~~~~l~DTaG~~~~~~~~v--e~~--gi-~~~~~~~~~aD-~vl~VvD~s~~~ 337 (482)
T 1xzp_A 284 -----------------EEIVIR---GILFRIVDTAGVRSETNDLV--ERL--GI-ERTLQEIEKAD-IVLFVLDASSPL 337 (482)
T ss_dssp -----------------EEEEET---TEEEEEEESSCCCSSCCTTC--CCC--CH-HHHHHHHHHCS-EEEEEEETTSCC
T ss_pred -----------------EEEecC---CeEEEEEECCCccccchhhH--HHH--HH-HHHHHHhhccc-EEEEEecCCCCC
Confidence 112221 1358999999996 432111 111 01 22345777776 777777776544
Q ss_pred chHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 218 CSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 218 ~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
..++ .++.+.+ .+.+.|.|+||+|+.
T Consensus 338 s~~~-~~il~~l--~~~piivV~NK~DL~ 363 (482)
T 1xzp_A 338 DEED-RKILERI--KNKRYLVVINKVDVV 363 (482)
T ss_dssp CHHH-HHHHHHH--TTSSEEEEEEECSSC
T ss_pred CHHH-HHHHHHh--cCCCEEEEEECcccc
Confidence 3332 2333444 257899999999984
No 115
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.41 E-value=1.5e-07 Score=103.21 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=72.0
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHH
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKS 138 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~ 138 (822)
+|.|++||..|+||||||++|++..+...+-...|..|.
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~----------------------------------------- 196 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPN----------------------------------------- 196 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCC-----------------------------------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCce-----------------------------------------
Confidence 789999999999999999999986532111001122111
Q ss_pred HHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCc---
Q 003415 139 RTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSV--- 215 (822)
Q Consensus 139 a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~--- 215 (822)
.-.+..++...++|+||||++..+... ..... . ..++++..+ ++|.|++++.
T Consensus 197 ------------------~g~v~~~~~~~~~l~DtPG~i~~a~~~--~~l~~---~-fl~~i~~~d-~ll~VvD~s~~~~ 251 (342)
T 1lnz_A 197 ------------------LGMVETDDGRSFVMADLPGLIEGAHQG--VGLGH---Q-FLRHIERTR-VIVHVIDMSGLEG 251 (342)
T ss_dssp ------------------EEEEECSSSCEEEEEEHHHHHHHTTCT--TTTHH---H-HHHHHHHCC-EEEEEEESSCSSC
T ss_pred ------------------EEEEEeCCCceEEEecCCCCccccccc--chhHH---H-HHHHHHhcc-EEEEEEECCcccc
Confidence 001222223568999999998754322 11111 1 122333355 6677777753
Q ss_pred -c-cch-HHHHHHHHHhCC--CCCcEEEEeeCCCcc
Q 003415 216 -E-WCS-SLWLDAIREIDP--TFRRTVIVVSKFDNR 246 (822)
Q Consensus 216 -D-~~n-q~il~lar~~Dp--~g~RTIgViTK~D~~ 246 (822)
+ +.. ..++..++.+++ ...+.|.|+||+|+.
T Consensus 252 ~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 252 RDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp CCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred cChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 2 111 235566666665 367889999999985
No 116
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.41 E-value=6.9e-07 Score=87.90 Aligned_cols=66 Identities=18% Similarity=0.091 Sum_probs=42.4
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch----HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS----SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n----q~il~lar~~Dp~g~RTIgViTK 242 (822)
.+.|+||||.-. ...+...|+++.+.+ ++|.++++...- ..++..++...+ ..+.|.|.||
T Consensus 72 ~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK 136 (194)
T 3reg_A 72 ILHLWDTAGQEE-------------YDRLRPLSYADSDVV-LLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLK 136 (194)
T ss_dssp EEEEEEECCSGG-------------GTTTGGGGCTTCSEE-EEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEEC
T ss_pred EEEEEECCCcHH-------------HHHHhHhhccCCcEE-EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 578999999422 124556788888754 455555533221 235555665543 5789999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 137 ~Dl~~ 141 (194)
T 3reg_A 137 VDLRK 141 (194)
T ss_dssp GGGCC
T ss_pred hhhcc
Confidence 99853
No 117
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.40 E-value=1e-07 Score=94.53 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=39.0
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH---HHHHHHHHhCCCCCcEEEEeeCC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS---LWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq---~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.+.|+||||..... .+...|+++.+ ++++|+++++...-. .++..+....+.+.+.|.|+||.
T Consensus 83 ~~~i~Dt~G~~~~~-------------~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~ 148 (199)
T 3l0i_B 83 KLQIWDTAGQERFR-------------TITSSYYRGAH-GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 148 (199)
T ss_dssp EEEEECCTTCTTCC-------------CCSCC--CCCS-EEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCS
T ss_pred EEEEEECCCcHhHH-------------HHHHHHhhcCC-EEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECc
Confidence 68999999953221 12346777777 555566666433222 34555555555578899999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 149 Dl~ 151 (199)
T 3l0i_B 149 DLT 151 (199)
T ss_dssp SCC
T ss_pred cCC
Confidence 985
No 118
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.40 E-value=5.8e-07 Score=88.31 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=43.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc--cchH--HHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE--WCSS--LWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D--~~nq--~il~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||.... +.+...|+++.+. +++|.++++. +.+. .++..+++..+ +.+.|.|+|
T Consensus 66 ~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~n 130 (194)
T 2atx_A 66 YLLGLYDTAGQEDY-------------DRLRPLSYPMTDV-FLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGT 130 (194)
T ss_dssp EEEEEECCCCSSSS-------------TTTGGGGCTTCSE-EEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEE
T ss_pred EEEEEEECCCCcch-------------hHHHHHhcCCCCE-EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEE
Confidence 36889999996432 1345678888874 4555565533 2221 35566666544 688999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 131 K~Dl~ 135 (194)
T 2atx_A 131 QIDLR 135 (194)
T ss_dssp CTTST
T ss_pred Chhhc
Confidence 99995
No 119
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.39 E-value=1.6e-06 Score=85.32 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-.|+|||+.++|||||+++|++-.|+
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~~ 47 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRFI 47 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCCC
Confidence 48999999999999999999988775
No 120
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.39 E-value=1.6e-06 Score=84.78 Aligned_cols=67 Identities=15% Similarity=0.026 Sum_probs=42.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHH----HHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLD----AIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~----lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||... .+.+...|+++.+.+| +|.++++.-.-..+.. +.+.....+.+.|.|.|
T Consensus 60 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 125 (181)
T 1fzq_A 60 FKLNVWDIGGQRK-------------IRPYWRSYFENTDILI-YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125 (181)
T ss_dssp EEEEEEECSSCGG-------------GHHHHHHHHTTCSEEE-EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEE
T ss_pred EEEEEEECCCCHH-------------HHHHHHHHhCCCCEEE-EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 4688999999521 3456778999888554 4556553322222222 22222345688999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 126 K~Dl~ 130 (181)
T 1fzq_A 126 KQDLL 130 (181)
T ss_dssp CTTST
T ss_pred CcCcc
Confidence 99984
No 121
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.39 E-value=4.2e-07 Score=90.86 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=42.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc--cch--HHHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE--WCS--SLWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D--~~n--q~il~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||.... ..+...|+++.+.+| +|.+++.. +.+ ..++..++...+ +.+.|.|+|
T Consensus 73 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~n 137 (207)
T 2fv8_A 73 VELALWDTAGQEDY-------------DRLRPLSYPDTDVIL-MCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVAN 137 (207)
T ss_dssp EEEEEEECTTCTTC-------------TTTGGGGCTTCCEEE-EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEE
T ss_pred EEEEEEECCCcHHH-------------HHHHHhhcCCCCEEE-EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEE
Confidence 36889999996322 134456888887554 45555432 122 235556665544 578999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 138 K~Dl~ 142 (207)
T 2fv8_A 138 KKDLR 142 (207)
T ss_dssp CGGGG
T ss_pred chhhh
Confidence 99995
No 122
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.39 E-value=5.8e-07 Score=86.98 Aligned_cols=67 Identities=12% Similarity=0.062 Sum_probs=39.4
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHh----CCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREI----DPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~----Dp~g~RTIgViT 241 (822)
..+.|+||||..... .+...|+++.+ ++++|++++....-..+......+ ...+.+.|.|+|
T Consensus 62 ~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 127 (183)
T 1moz_A 62 LKLNVWDLGGQTSIR-------------PYWRCYYADTA-AVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFAN 127 (183)
T ss_dssp EEEEEEEEC----CC-------------TTGGGTTTTEE-EEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEE
T ss_pred EEEEEEECCCCHhHH-------------HHHHHHhccCC-EEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEE
Confidence 568999999985321 23456777776 566666665443223333322322 245788999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 128 K~Dl~ 132 (183)
T 1moz_A 128 KQDQP 132 (183)
T ss_dssp CTTST
T ss_pred CCCCC
Confidence 99984
No 123
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.38 E-value=2.6e-07 Score=91.95 Aligned_cols=66 Identities=17% Similarity=0.115 Sum_probs=42.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc--cch--HHHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE--WCS--SLWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D--~~n--q~il~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||.-.. ..+...|+++.+.+ ++|.+++.. +.+ ..++..+++..+ +.+.|.|+|
T Consensus 73 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~n 137 (201)
T 2gco_A 73 VELALWDTAGQEDY-------------DRLRPLSYPDTDVI-LMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGN 137 (201)
T ss_dssp EEEEEECCCCSGGG-------------TTTGGGGCTTCSEE-EEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEE
T ss_pred EEEEEEECCCchhH-------------HHHHHHhcCCCCEE-EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEe
Confidence 36789999995321 23445688888744 555555432 222 235566666544 688999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 138 K~Dl~ 142 (201)
T 2gco_A 138 KKDLR 142 (201)
T ss_dssp CGGGT
T ss_pred cHHhh
Confidence 99995
No 124
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.36 E-value=1e-06 Score=87.25 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.-..|+|+|+.++|||||+++|++-.|+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~ 55 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV 55 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc
Confidence 3468999999999999999999987764
No 125
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.36 E-value=9.6e-07 Score=87.21 Aligned_cols=65 Identities=18% Similarity=0.149 Sum_probs=42.1
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH----HHHHHHHHhCCCCCcEEEEeeC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS----LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq----~il~lar~~Dp~g~RTIgViTK 242 (822)
.+.|+||||..... .+...|+.+.+ ++++|.++++...-. .++..++...+ +.+.|.|.||
T Consensus 69 ~~~i~Dt~G~~~~~-------------~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK 133 (201)
T 2q3h_A 69 RLQLCDTAGQDEFD-------------KLRPLCYTNTD-IFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQ 133 (201)
T ss_dssp EEEEEECCCSTTCS-------------SSGGGGGTTCS-EEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEEC
T ss_pred EEEEEECCCCHHHH-------------HHhHhhcCCCc-EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 57899999974321 13456888887 555556655332222 24555555555 6889999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 134 ~Dl~ 137 (201)
T 2q3h_A 134 SDLR 137 (201)
T ss_dssp GGGG
T ss_pred Hhhh
Confidence 9985
No 126
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.35 E-value=4.6e-07 Score=91.29 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=33.3
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH----HHHHHHHHhCCCCCcEEEEeeC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS----LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq----~il~lar~~Dp~g~RTIgViTK 242 (822)
.+.|+||||.. ....+...|+++.+ ++++|.++++...-. .++..++...+ +.+.|.|+||
T Consensus 83 ~l~l~Dt~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK 147 (214)
T 2j1l_A 83 HLHIWDTAGQD-------------DYDRLRPLFYPDAS-VLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCK 147 (214)
T ss_dssp EEEEEEC----------------------------CEE-EEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEEC
T ss_pred EEEEEECCCch-------------hhhHHHHHHhccCC-EEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 58899999942 22345667888777 455555655332211 24555665554 5789999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 148 ~Dl~ 151 (214)
T 2j1l_A 148 TDLR 151 (214)
T ss_dssp GGGG
T ss_pred hhhh
Confidence 9995
No 127
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.35 E-value=5.6e-06 Score=80.56 Aligned_cols=82 Identities=20% Similarity=0.115 Sum_probs=47.9
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccc--h----HHHHHHHHHh--CCCCCcEEE
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWC--S----SLWLDAIREI--DPTFRRTVI 238 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~--n----q~il~lar~~--Dp~g~RTIg 238 (822)
.+.|+||||... .+.+...|+++.+.+ ++|++++.... + ..+.....++ ...+.+.|.
T Consensus 75 ~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~-i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piil 140 (198)
T 3t1o_A 75 RFHLYTVPGQVF-------------YNASRKLILRGVDGI-VFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVI 140 (198)
T ss_dssp EEEEEECCSCCS-------------CSHHHHHHTTTCCEE-EEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEE
T ss_pred EEEEEeCCChHH-------------HHHHHHHHHhcCCEE-EEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEE
Confidence 588999999532 234667799988855 55556552211 1 1223334443 335788999
Q ss_pred EeeCCCccccccccHHHHHHHhhhcC
Q 003415 239 VVSKFDNRLKEFSDRWEVDRYLSASG 264 (822)
Q Consensus 239 ViTK~D~~~~~~s~~~~v~~~l~~~G 264 (822)
|.||.|+... ....++..+....|
T Consensus 141 v~NK~Dl~~~--~~~~~~~~~~~~~~ 164 (198)
T 3t1o_A 141 QVNKRDLPDA--LPVEMVRAVVDPEG 164 (198)
T ss_dssp EEECTTSTTC--CCHHHHHHHHCTTC
T ss_pred EEEchhcccc--cCHHHHHHHHHhcC
Confidence 9999998432 22233445554433
No 128
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.34 E-value=2.7e-06 Score=84.05 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
....|+|+|+.++|||||+++|++-.|.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~ 49 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA 49 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4459999999999999999999987764
No 129
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.33 E-value=3.9e-07 Score=103.80 Aligned_cols=72 Identities=14% Similarity=0.320 Sum_probs=36.8
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHH-HHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEI-LSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v-~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D 244 (822)
..++|+||||+.... +..+.+ -.....|++..+ ++|+|++++..+.... ..+.+.+. ..+.|.|+||.|
T Consensus 272 ~~v~liDT~G~~~~~------~~ve~~gi~~~~~~~~~aD-~vl~VvD~s~~~~~~~-~~i~~~l~--~~piivV~NK~D 341 (462)
T 3geh_A 272 IPVQVLDTAGIRETS------DQVEKIGVERSRQAANTAD-LVLLTIDAATGWTTGD-QEIYEQVK--HRPLILVMNKID 341 (462)
T ss_dssp EEEEECC--------------------------CCCCSCS-EEEEEEETTTCSCHHH-HHHHHHHT--TSCEEEEEECTT
T ss_pred EEEEEEECCccccch------hHHHHHHHHHHhhhhhcCC-EEEEEeccCCCCCHHH-HHHHHhcc--CCcEEEEEECCC
Confidence 357999999985421 111111 122345777776 7777788776555443 34444443 268999999999
Q ss_pred ccc
Q 003415 245 NRL 247 (822)
Q Consensus 245 ~~~ 247 (822)
+..
T Consensus 342 l~~ 344 (462)
T 3geh_A 342 LVE 344 (462)
T ss_dssp SSC
T ss_pred CCc
Confidence 853
No 130
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.33 E-value=2.9e-07 Score=92.07 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=42.2
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH----HHHHHHHHhCCCCCcEEEEeeC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS----LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq----~il~lar~~Dp~g~RTIgViTK 242 (822)
.+.|+||||.-.. ..+...|+++.+.+ ++|.++++...-. .++..++... .+...|.|+||
T Consensus 79 ~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK 143 (204)
T 4gzl_A 79 NLGLWDTAGLEDY-------------DRLRPLSYPQTDVF-LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTK 143 (204)
T ss_dssp EEEEEEECCSGGG-------------TTTGGGGCTTCSEE-EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEEC
T ss_pred EEEEEECCCchhh-------------HHHHHHHhccCCEE-EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEec
Confidence 5679999997322 23456688888755 4555555332222 3455566554 36889999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 144 ~Dl~ 147 (204)
T 4gzl_A 144 LDLR 147 (204)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 9985
No 131
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.33 E-value=8.2e-07 Score=85.68 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.-.|+|+|+.++|||||+++|++-.|.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~ 33 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQ 33 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 347999999999999999999998775
No 132
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.32 E-value=2.2e-06 Score=85.21 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
....|+|||+.++||||||++|+|..+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~ 49 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGD 49 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCC
Confidence 4568999999999999999999987654
No 133
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.32 E-value=4.4e-07 Score=89.03 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
....|+|+|+.++|||||+++|++-.|.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~ 34 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFR 34 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCC
Confidence 4568999999999999999999997765
No 134
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.29 E-value=6.9e-07 Score=86.22 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=41.4
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH----HHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS----LWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq----~il~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||.... +.+...|+++.+. +++|.++++...-. .++..++...+ +.+.|.|+|
T Consensus 56 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~n 120 (182)
T 3bwd_D 56 VNLGLWDTAGQEDY-------------NRLRPLSYRGADV-FILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGT 120 (182)
T ss_dssp --CEEECCCC-CTT-------------TTTGGGGGTTCSE-EEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEE
T ss_pred EEEEEEECCCChhh-------------hhhHHhhccCCCE-EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEe
Confidence 46789999995321 2345678888874 55556655332211 35566666655 688999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 121 K~Dl~ 125 (182)
T 3bwd_D 121 KLDLR 125 (182)
T ss_dssp CHHHH
T ss_pred chhhh
Confidence 99984
No 135
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.29 E-value=1.6e-06 Score=100.34 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccccccccccc-ccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGT-RRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cT-R~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
..+.|+|||+.++|||||+|+|++..-.....|.+. +.+ -+ ..+.+..
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~-------------------------~~------~~~~d~~ 60 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKA-------------------------AR------HATSDWM 60 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC-----------------------------------CCHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeecccc-------------------------cc------ceecccc
Confidence 467999999999999999999985321110001100 000 00 0011222
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE 216 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D 216 (822)
....+ .|..+.. ..+.+.+. ...++||||||...- ...+..|+...+ .+|+|++++..
T Consensus 61 ~~e~~-----~GiTi~~--~~~~~~~~-~~~i~liDTPG~~df-------------~~~~~~~l~~aD-~allVvDa~~g 118 (528)
T 3tr5_A 61 ELEKQ-----RGISVTT--SVMQFPYK-DYLINLLDTPGHADF-------------TEDTYRTLTAVD-SALMVIDAAKG 118 (528)
T ss_dssp HHHHH-----HCCSSSS--SEEEEEET-TEEEEEECCCCSTTC-------------CHHHHHGGGGCS-EEEEEEETTTC
T ss_pred hhhhc-----CCeeEEE--eEEEEEeC-CEEEEEEECCCchhH-------------HHHHHHHHHhCC-EEEEEEeCCCC
Confidence 21111 2333333 34455553 356999999997431 134678888887 55666777765
Q ss_pred cchHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 217 WCSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 217 ~~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
...+. ..+.+.+...+.+.|.|+||+|+.
T Consensus 119 ~~~~t-~~~~~~~~~~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 119 VEPRT-IKLMEVCRLRHTPIMTFINKMDRD 147 (528)
T ss_dssp SCHHH-HHHHHHHHTTTCCEEEEEECTTSC
T ss_pred CCHHH-HHHHHHHHHcCCCEEEEEeCCCCc
Confidence 55443 333344444578999999999983
No 136
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.29 E-value=1.1e-06 Score=85.86 Aligned_cols=28 Identities=25% Similarity=0.166 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
....|+|||+.++|||||+++|++-.|+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~ 48 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV 48 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 4569999999999999999999876654
No 137
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.28 E-value=8.6e-07 Score=100.00 Aligned_cols=126 Identities=17% Similarity=0.171 Sum_probs=69.0
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccccccc-ccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREV-EMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADII 136 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~-g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I 136 (822)
..+.|++||+.|+||||||++|+|..+...+. ...||-|+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~--------------------------------------- 219 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPV--------------------------------------- 219 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------C---------------------------------------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCce---------------------------------------
Confidence 46799999999999999999999987532210 01121110
Q ss_pred HHHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCC-CCCCchHHHHHHHHHhcCCCCcEEEEEecCCc
Q 003415 137 KSRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKG-EPENTPDEILSMVKSLASPPHRILVFLQQSSV 215 (822)
Q Consensus 137 ~~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~-q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~ 215 (822)
...+.+.+ .++.++||||+....... +..+.-... -+..|++..+ ++++|+++..
T Consensus 220 ------------------~~~i~~~g---~~~~l~Dt~G~~~~~~~~~~~~e~~~~~--~~~~~i~~ad-~vllv~d~~~ 275 (439)
T 1mky_A 220 ------------------DDEVFIDG---RKYVFVDTAGLRRKSRVEPRTVEKYSNY--RVVDSIEKAD-VVVIVLDATQ 275 (439)
T ss_dssp ------------------CEEEEETT---EEEEESSCSCC-----------CCSCCH--HHHHHHHHCS-EEEEEEETTT
T ss_pred ------------------EEEEEECC---EEEEEEECCCCccccccchhhHHHHHHH--HHHHHHhhCC-EEEEEEeCCC
Confidence 01122222 257899999985432111 000000001 1234566666 5666677765
Q ss_pred ccchHHHHHHHHHhCCCCCcEEEEeeCCCccc
Q 003415 216 EWCSSLWLDAIREIDPTFRRTVIVVSKFDNRL 247 (822)
Q Consensus 216 D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~ 247 (822)
....++ ..++..+...+...|.|+||+|+..
T Consensus 276 ~~~~~~-~~i~~~l~~~~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 276 GITRQD-QRMAGLMERRGRASVVVFNKWDLVV 306 (439)
T ss_dssp CCCHHH-HHHHHHHHHTTCEEEEEEECGGGST
T ss_pred CCCHHH-HHHHHHHHHcCCCEEEEEECccCCC
Confidence 554443 3344444445789999999999853
No 138
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.27 E-value=1.9e-06 Score=85.96 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=42.1
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccc--h--HHHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWC--S--SLWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~--n--q~il~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||.... ..+...|+++.+.+| +|.+.++... + ..|+..++...| +.+.|.|+|
T Consensus 57 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i-lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~n 121 (212)
T 2j0v_A 57 VNLGLWDTAGQEDY-------------SRLRPLSYRGADIFV-LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGT 121 (212)
T ss_dssp EEEEEECCCCCCCC-------------CC--CGGGTTCSEEE-EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEE
T ss_pred EEEEEEECCCcHHH-------------HHHHHhhccCCCEEE-EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEe
Confidence 36789999997322 124456888888554 5555553222 1 135566666655 688999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 122 K~Dl~ 126 (212)
T 2j0v_A 122 KLDLR 126 (212)
T ss_dssp CHHHH
T ss_pred CHHhh
Confidence 99984
No 139
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=98.26 E-value=3.2e-06 Score=89.69 Aligned_cols=170 Identities=12% Similarity=0.132 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccCcchhhhhhccCCCCCCcccccccCCchhhhhccCcchhhhhhhh
Q 003415 372 DVAQLRRFAMMYAASISTHVGALIDGAADPAPEQWGKSTEEEQSESGIGSWPGVSIDIKPPNATLRLYGGAAFERVMHEF 451 (822)
Q Consensus 372 d~~e~R~~L~~~~~~F~~~v~~al~G~y~~~~~fFG~t~~eer~~~g~~~~~rlra~i~~~N~~mrl~Ggaqfer~l~Ef 451 (822)
|+.+.-.+|+..+..|.+.+.+++.|.+..- + +++.-+..+|..+...+..+.-.| .-+
T Consensus 2 ~~~e~~~FLidkI~~F~~di~~l~~Gee~~~----~---------~~~rlf~~lr~eF~~w~~~l~~~~--------~~~ 60 (271)
T 3ljb_A 2 DENEKMFFLIDKVNAFNQDITALMQGEETVG----E---------EDIRLFTRLRHEFHKWSTIIENNF--------QEG 60 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC----T---------TCCCHHHHHHHHHHHHHHHHHHHH--------HHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCceeccc----C---------CcchHHHHHHHHHHHHHHHHhhhc--------cch
Confidence 4566678999999999999999999998731 1 011001122211100011110000 001
Q ss_pred hhhcccCCCCccCHHHHHHHHHhhcCCCCCCC-cHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 003415 452 RCAAYSIECPQVSREKVANILLAHAGRGGGRG-VMEAAAEIARAAARSWFAPLLDTACDRLAFVLGNLFDIALERHCNQD 530 (822)
Q Consensus 452 ~~~~~~~~~P~vsreeV~~~l~~srG~ELPG~-np~aa~~LfreQS~~W~~pla~~h~~rv~~i~~rfv~~al~~i~~~d 530 (822)
. ....++|.+....+||+||||+ +..+...|.++|.+.|.+|.++ .++.|..++++.+..+...
T Consensus 61 ~---------~~i~~ev~~~e~~~rGrELPgFv~y~aFE~lVk~qI~~LeePAl~-cl~~V~e~l~~~~~~i~~~----- 125 (271)
T 3ljb_A 61 H---------KILSRKIQKFENQYRGRELPGFVNYRTFETIVKQQIKALEEPAVD-MLHTVTDMVRLAFTDVSIK----- 125 (271)
T ss_dssp H---------HHHHHHHHHHHC---------CTTHHHHHHHHHHHHHTTHHHHHH-HHHHHHHHHHHHHHHHHHH-----
T ss_pred H---------HHHHHHHHHHHHHccCcccCCCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-----
Confidence 0 1224688888999999999999 7788888999999999988764 4567777777766655531
Q ss_pred ccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHccccccCCCCCCCccc
Q 003415 531 SEYGNKTGNMDGYVSFHASLRQAYNRFVKDLSKQCKQLVRHHLDSVTSPYSLVCY 585 (822)
Q Consensus 531 ~~~~~~~~~l~~~~~~~~~L~~~~~~fv~ele~~ck~k~~~~Les~trpyt~~~~ 585 (822)
.+.+||.|...+++....+..+.+..++..++..+.....+|+++..
T Consensus 126 --------~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~~~~~mE~~vytqD~~ 172 (271)
T 3ljb_A 126 --------NFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQIVYCQDQV 172 (271)
T ss_dssp --------HHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----
T ss_pred --------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHH
Confidence 12348899999999999999999999999999999999999988863
No 140
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.26 E-value=8.7e-07 Score=99.07 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=23.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEE
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQ 100 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~ 100 (822)
+|++||.+|+|||||+|+|+|....+..--.||+-|+.-.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~ 41 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGV 41 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEE
Confidence 6899999999999999999998743212223677776543
No 141
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.26 E-value=2.9e-06 Score=95.92 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=45.1
Q ss_pred EEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccc---------hHHHHHHHH
Q 003415 157 VMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWC---------SSLWLDAIR 227 (822)
Q Consensus 157 ~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~---------nq~il~lar 227 (822)
...++.++. .++||||||.. .....+..|++..+ ++|+|++|+.... ..+.+.+++
T Consensus 87 ~~~~~~~~~-~~~iiDTPGh~-------------~f~~~~~~~~~~aD-~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~ 151 (439)
T 3j2k_7 87 RAYFETEKK-HFTILDAPGHK-------------SFVPNMIGGASQAD-LAVLVISARKGEFETGFEKGGQTREHAMLAK 151 (439)
T ss_pred EEEEecCCe-EEEEEECCChH-------------HHHHHHHhhHhhCC-EEEEEEECCCCccccccCCCchHHHHHHHHH
Confidence 334444443 89999999952 22334456777777 5666667765432 233444555
Q ss_pred HhCCCCCc-EEEEeeCCCcc
Q 003415 228 EIDPTFRR-TVIVVSKFDNR 246 (822)
Q Consensus 228 ~~Dp~g~R-TIgViTK~D~~ 246 (822)
.. +.+ .|.|+||+|+.
T Consensus 152 ~~---~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 152 TA---GVKHLIVLINKMDDP 168 (439)
T ss_pred Hc---CCCeEEEEeecCCCc
Confidence 43 455 89999999985
No 142
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.24 E-value=1.3e-06 Score=94.99 Aligned_cols=67 Identities=15% Similarity=0.087 Sum_probs=40.4
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH----HHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS----LWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq----~il~lar~~Dp~g~RTIgViT 241 (822)
..++|+||||-- ....+...|++..+ ++|+|+++++.-.-. .+..+.+.....+...|.|+|
T Consensus 209 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad-~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~N 274 (329)
T 3o47_A 209 ISFTVWDVGGQD-------------KIRPLWRHYFQNTQ-GLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 274 (329)
T ss_dssp EEEEEEECC------------------CCSHHHHHTTEE-EEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred EEEEEEECCCCH-------------hHHHHHHHHhccCC-EEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEE
Confidence 468999999931 22345677888877 556666665332222 233344444334678999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 275 K~Dl~ 279 (329)
T 3o47_A 275 KQDLP 279 (329)
T ss_dssp CTTST
T ss_pred CccCC
Confidence 99984
No 143
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.22 E-value=2.2e-06 Score=97.71 Aligned_cols=111 Identities=16% Similarity=0.041 Sum_probs=69.9
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHHH
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIKS 138 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~~ 138 (822)
...|+|||+.++||||||++|++-.|... .-|+-+.
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~~~~---~~T~~~~----------------------------------------- 357 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQSVTT---IPTVGFN----------------------------------------- 357 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCCC---CCCSSEE-----------------------------------------
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCc---CCcccee-----------------------------------------
Confidence 35899999999999999999998775411 1111110
Q ss_pred HHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccc
Q 003415 139 RTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWC 218 (822)
Q Consensus 139 a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~ 218 (822)
.-.|.+. ...+.|+||||.... +.+...|+++.+ ++|+|+++++...
T Consensus 358 ------------------~~~~~~~-~~~~~l~Dt~G~~~~-------------~~~~~~~~~~ad-~~i~V~D~~~~~s 404 (497)
T 3lvq_E 358 ------------------VETVTYK-NVKFNVWDVGGQDKI-------------RPLWRHYYTGTQ-GLIFVVDCADRDR 404 (497)
T ss_dssp ------------------EEEEESS-SCEEEEEEECCCGGG-------------SGGGGGGGTTCC-EEEEEEETTCGGG
T ss_pred ------------------EEEEEeC-CEEEEEEECCCcHHH-------------HHHHHHHhccCC-EEEEEEECcchhH
Confidence 0011111 146899999995321 234578898887 6666777765433
Q ss_pred hHHH----HHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 219 SSLW----LDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 219 nq~i----l~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
-..+ ..+.+.....+...|.|+||.|+.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 405 IDEARQELHRIINDREMRDAIILIFANKQDLP 436 (497)
T ss_dssp HHHHHHHHHHHHTSGGGTTCEEEEEEECCSSS
T ss_pred HHHHHHHHHHHhhhhhcCCCcEEEEEECCCCC
Confidence 3222 233333333578999999999984
No 144
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.22 E-value=1.5e-06 Score=97.99 Aligned_cols=81 Identities=20% Similarity=0.207 Sum_probs=49.3
Q ss_pred CCeEEEeCCCCccccCCCC-CCC----chHHHHHHHHHhcCCC-----------CcEEEEEecCCcccchHHHHHHHHHh
Q 003415 166 PNLTIIDTPGFVLKAKKGE-PEN----TPDEILSMVKSLASPP-----------HRILVFLQQSSVEWCSSLWLDAIREI 229 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q-~~~----~~~~v~~LV~~Yik~~-----------~sIILaVv~A~~D~~nq~il~lar~~ 229 (822)
++||++|+||+........ -.. ....+..++..|+.-. ++++++|+|+...+...+ +.+++.+
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieilk~L 173 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTMKKL 173 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHHHHT
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHHHHH
Confidence 5899999999975322100 000 1223344445553211 236888889887777766 6788888
Q ss_pred CCCCCcEEEEeeCCCcccc
Q 003415 230 DPTFRRTVIVVSKFDNRLK 248 (822)
Q Consensus 230 Dp~g~RTIgViTK~D~~~~ 248 (822)
. .+.+.|.|+||.|.+.+
T Consensus 174 ~-~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 174 D-SKVNIIPIIAKADAISK 191 (427)
T ss_dssp C-SCSEEEEEESCGGGSCH
T ss_pred h-hCCCEEEEEcchhccch
Confidence 7 68899999999999643
No 145
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.22 E-value=3.7e-06 Score=98.94 Aligned_cols=144 Identities=21% Similarity=0.187 Sum_probs=75.6
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIK 137 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~ 137 (822)
....|+|||+.++|||||+++|++...-... .....+ .+. ..+.|..-.....+-+...
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~-~~i~~~------~~~--------------~~~~g~~~~~~a~~~d~~~ 224 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQ-SQLRKL------QRE--------------SETMGKSSFKFAWIMDQTN 224 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCC-HHHHHH------HHH--------------SSCSSSSCCSSSHHHHHHH
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccH-HHHHHH------Hhh--------------hhhccccccceeeeeccch
Confidence 4668999999999999999999976432111 000000 000 0000100011111212111
Q ss_pred HHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc-
Q 003415 138 SRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE- 216 (822)
Q Consensus 138 ~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D- 216 (822)
+.. .. +++-+.....+..+ ...++||||||... ....+..|++..+ ++|+|++++..
T Consensus 225 ---~e~--~~--GiTid~~~~~~~~~-~~~~~iiDTPG~e~-------------f~~~~~~~~~~aD-~~llVVDa~~g~ 282 (611)
T 3izq_1 225 ---EER--ER--GVTVSICTSHFSTH-RANFTIVDAPGHRD-------------FVPNAIMGISQAD-MAILCVDCSTNA 282 (611)
T ss_dssp ---HHH--HT--TTCCSCSCCEEECS-SCEEEEEECCSSSC-------------HHHHHTTTSSCCS-EEEEEEECSHHH
T ss_pred ---hhh--hC--CeeEeeeeEEEecC-CceEEEEECCCCcc-------------cHHHHHHHHhhcC-ceEEEEECCCCc
Confidence 111 12 33333333444443 35799999999721 2345567888887 66666677643
Q ss_pred ------cchH--HHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 217 ------WCSS--LWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 217 ------~~nq--~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
+..+ +.+.+++... ..+.|.|+||+|+.
T Consensus 283 ~e~~~~~~~qt~e~l~~~~~lg--i~~iIVVvNKiDl~ 318 (611)
T 3izq_1 283 FESGFDLDGQTKEHMLLASSLG--IHNLIIAMNKMDNV 318 (611)
T ss_dssp HHTTCCTTSHHHHHHHHHHTTT--CCEEEEEEECTTTT
T ss_pred ccccchhhhHHHHHHHHHHHcC--CCeEEEEEeccccc
Confidence 2223 2344444432 24589999999985
No 146
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.20 E-value=3.6e-06 Score=82.11 Aligned_cols=66 Identities=20% Similarity=0.150 Sum_probs=41.6
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch----HHHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS----SLWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n----q~il~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||.... ..+...|+.+.+. +++|.++++...- ..|+..+++..+ +.+.|.|.|
T Consensus 55 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~-~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~n 119 (184)
T 1m7b_A 55 IELSLWDTSGSPYY-------------DNVRPLSYPDSDA-VLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGC 119 (184)
T ss_dssp EEEEEEEECCSGGG-------------TTTGGGGCTTCSE-EEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEE
T ss_pred EEEEEEECCCChhh-------------hhhHHhhcCCCcE-EEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEE
Confidence 35789999996322 1234568888774 4555565533221 124455555544 578999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 120 K~Dl~ 124 (184)
T 1m7b_A 120 KSDLR 124 (184)
T ss_dssp CGGGG
T ss_pred cchhh
Confidence 99985
No 147
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.19 E-value=4.9e-06 Score=82.65 Aligned_cols=74 Identities=14% Similarity=0.156 Sum_probs=42.8
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCC--CCcEEEEEecCCcccchH--HHHHHHHHhCCCCCcEEEEeeC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASP--PHRILVFLQQSSVEWCSS--LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~--~~sIILaVv~A~~D~~nq--~il~lar~~Dp~g~RTIgViTK 242 (822)
.+.|+||||+..... +....+.++.++..|++. .-..+++|.++....... .+..++.. .+...+.|.||
T Consensus 73 ~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~v~nK 146 (210)
T 1pui_A 73 GKRLVDLPGYGYAEV---PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD---SNIAVLVLLTK 146 (210)
T ss_dssp TEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred CEEEEECcCCccccc---CHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH---cCCCeEEEEec
Confidence 688999999864321 223345566777777742 223455666665443322 23333333 35778899999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
+|+.
T Consensus 147 ~D~~ 150 (210)
T 1pui_A 147 ADKL 150 (210)
T ss_dssp GGGS
T ss_pred ccCC
Confidence 9985
No 148
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.19 E-value=1.9e-06 Score=95.01 Aligned_cols=79 Identities=15% Similarity=0.071 Sum_probs=39.3
Q ss_pred CCeEEEeCCCCccccCCC-CCCCchHHHHHHHHHhcCCCCc------------EEEEEec-CCcccchHHHHHHHHHhCC
Q 003415 166 PNLTIIDTPGFVLKAKKG-EPENTPDEILSMVKSLASPPHR------------ILVFLQQ-SSVEWCSSLWLDAIREIDP 231 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~-q~~~~~~~v~~LV~~Yik~~~s------------IILaVv~-A~~D~~nq~il~lar~~Dp 231 (822)
..|+|+||||+....... .-......+.+....|+..... ++|.+++ +...+...+ ..+.+.+.
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d-~~~~~~l~- 172 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD-VAFMKAIH- 172 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHH-HHHHHHTC-
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhH-HHHHHHhc-
Confidence 468999999996543211 1123334444555577754332 2444444 344454444 35566665
Q ss_pred CCCcEEEEeeCCCcc
Q 003415 232 TFRRTVIVVSKFDNR 246 (822)
Q Consensus 232 ~g~RTIgViTK~D~~ 246 (822)
.+...|.|+||+|+.
T Consensus 173 ~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 173 NKVNIVPVIAKADTL 187 (361)
T ss_dssp S-SCEEEEEECCSSS
T ss_pred cCCCEEEEEECCCCC
Confidence 467899999999985
No 149
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.19 E-value=3.4e-06 Score=89.70 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=42.9
Q ss_pred CeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH----HHHHHHHHhCCCCCcEEEEeeC
Q 003415 167 NLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS----LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 167 ~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq----~il~lar~~Dp~g~RTIgViTK 242 (822)
.+.|+||||.... ..+...|+++.+ ++++|+++++...-. .++..++...+ +.+.|.|+||
T Consensus 204 ~~~l~Dt~G~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK 268 (332)
T 2wkq_A 204 NLGLWDTAGLEDY-------------DRLRPLSYPQTD-VFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTK 268 (332)
T ss_dssp EEEEEEECCCGGG-------------TTTGGGGCTTCS-EEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEEC
T ss_pred EEEEEeCCCchhh-------------hHHHHHhccCCC-EEEEEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEc
Confidence 5679999996432 234567888887 555566665433222 24455666555 6899999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 269 ~Dl~ 272 (332)
T 2wkq_A 269 LDLR 272 (332)
T ss_dssp HHHH
T ss_pred hhcc
Confidence 9984
No 150
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.18 E-value=5.1e-06 Score=83.80 Aligned_cols=66 Identities=21% Similarity=0.182 Sum_probs=43.9
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccc--h--HHHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWC--S--SLWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~--n--q~il~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||.-.. ..+...|+++.+.+ ++|.++++... + ..|+..++...+ ....|.|.|
T Consensus 75 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~n 139 (214)
T 3q3j_B 75 VELSLWDTSGSPYY-------------DNVRPLCYSDSDAV-LLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGC 139 (214)
T ss_dssp EEEEEEEECCSGGG-------------TTTGGGGCTTCSEE-EEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEE
T ss_pred EEEEEEECCCCHhH-------------HHHHHHHcCCCeEE-EEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEE
Confidence 35789999996322 23456788888754 55555553322 1 346666776654 678999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 140 K~Dl~ 144 (214)
T 3q3j_B 140 KTDLR 144 (214)
T ss_dssp CGGGG
T ss_pred Chhhc
Confidence 99995
No 151
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.17 E-value=3.2e-06 Score=84.97 Aligned_cols=66 Identities=20% Similarity=0.150 Sum_probs=41.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch----HHHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS----SLWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n----q~il~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||.... ..+...|+++.+. +++|.++++...- ..|+..+++..+ ..+.|.|.|
T Consensus 76 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~-~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~n 140 (205)
T 1gwn_A 76 IELSLWDTSGSPYY-------------DNVRPLSYPDSDA-VLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGC 140 (205)
T ss_dssp EEEEEEEECCSGGG-------------TTTGGGGCTTCSE-EEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEE
T ss_pred EEEEEEeCCCcHhh-------------hHHHHhhccCCCE-EEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEe
Confidence 35889999996322 1234568888774 5555565532221 224455555544 578999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 141 K~Dl~ 145 (205)
T 1gwn_A 141 KSDLR 145 (205)
T ss_dssp CGGGG
T ss_pred chhhc
Confidence 99985
No 152
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.14 E-value=1.1e-05 Score=86.54 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=44.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH---H---HHHHHHhCCCCCcEEEE
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL---W---LDAIREIDPTFRRTVIV 239 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~---i---l~lar~~Dp~g~RTIgV 239 (822)
..+.|+||||...- .......+...|+++.+ ++++|.++++.-.-.. + +..++...| +.+.|.|
T Consensus 52 ~~l~i~Dt~G~~~~--------~~~~~~~~~~~~~~~ad-~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~-~~piilv 121 (307)
T 3r7w_A 52 MTLNLWDCGGQDVF--------MENYFTKQKDHIFQMVQ-VLIHVFDVESTEVLKDIEIFAKALKQLRKYSP-DAKIFVL 121 (307)
T ss_dssp EEEEEEEECCSHHH--------HHHHHTTTHHHHHTTCS-EEEEEEETTCSCHHHHHHHHHHHHHHHHHHCT-TCEEEEE
T ss_pred eEEEEEECCCcHHH--------hhhhhhhHHHHHhccCC-EEEEEEECCChhhHHHHHHHHHHHHHHHHhCC-CCeEEEE
Confidence 56899999996321 11112456778888887 5566666664332221 2 333333344 5899999
Q ss_pred eeCCCccc
Q 003415 240 VSKFDNRL 247 (822)
Q Consensus 240 iTK~D~~~ 247 (822)
+||.|+..
T Consensus 122 ~NK~Dl~~ 129 (307)
T 3r7w_A 122 LHKMDLVQ 129 (307)
T ss_dssp EECGGGSC
T ss_pred Eecccccc
Confidence 99999853
No 153
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.42 E-value=3e-07 Score=91.35 Aligned_cols=66 Identities=20% Similarity=0.147 Sum_probs=41.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH----HHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS----LWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq----~il~lar~~Dp~g~RTIgViT 241 (822)
..+.|+||||... ...+...|+++.+.+|+ |+++++...-. .++..++...+ +.+.|.|+|
T Consensus 78 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iil-v~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~N 142 (204)
T 3th5_A 78 VNLGLWDTAGQED-------------YDRLRPLSYPQTDVFLI-CFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGT 142 (204)
Confidence 3577999999522 23556678888775555 55544322211 24444444433 678999999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|.|+.
T Consensus 143 K~Dl~ 147 (204)
T 3th5_A 143 KLDLR 147 (204)
Confidence 99985
No 154
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.13 E-value=5.3e-07 Score=104.44 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=70.9
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIK 137 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~ 137 (822)
..|.|+|+|+.++||||||++|++..+.....+..|+-. +..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i--------------------------~~~------------ 44 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI--------------------------GAF------------ 44 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT--------------------------TSC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE--------------------------eEE------------
Confidence 468999999999999999999998877532211111100 000
Q ss_pred HHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc
Q 003415 138 SRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW 217 (822)
Q Consensus 138 ~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~ 217 (822)
. +..+....++|+||||.-.- ..+...|++..+ ++++|++++...
T Consensus 45 ------------~---------v~~~~g~~i~~iDTPGhe~f-------------~~~~~~~~~~aD-~vILVVDa~dg~ 89 (537)
T 3izy_P 45 ------------L---------VSLPSGEKITFLDTPGHAAF-------------SAMRARGTQVTD-IVILVVAADDGV 89 (537)
T ss_dssp ------------C---------BCSSCSSCCBCEECSSSCCT-------------TTSBBSSSBSBS-SCEEECBSSSCC
T ss_pred ------------E---------EEeCCCCEEEEEECCChHHH-------------HHHHHHHHccCC-EEEEEEECCCCc
Confidence 0 00111236899999995221 123345666666 566666777655
Q ss_pred chHHHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 218 CSSLWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 218 ~nq~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
..+. ...+..+...+.+.|.|+||.|+.
T Consensus 90 ~~qt-~e~l~~~~~~~vPiIVViNKiDl~ 117 (537)
T 3izy_P 90 MKQT-VESIQHAKDAHVPIVLAINKCDKA 117 (537)
T ss_dssp CHHH-HHHHHHHHTTTCCEEECCBSGGGT
T ss_pred cHHH-HHHHHHHHHcCCcEEEEEeccccc
Confidence 5443 333334434567899999999984
No 155
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.13 E-value=3.8e-06 Score=95.94 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=49.9
Q ss_pred ccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc-------cchH--
Q 003415 150 SVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE-------WCSS-- 220 (822)
Q Consensus 150 ~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D-------~~nq-- 220 (822)
+++-+.....+..+ ...++||||||... ...++..|++..+ ++|+|++++.. +..+
T Consensus 96 GiTi~~~~~~~~~~-~~~~~iiDTPG~~~-------------f~~~~~~~~~~aD-~~llVvDa~~g~~~~~~~~~~qt~ 160 (483)
T 3p26_A 96 GVTVSICTSHFSTH-RANFTIVDAPGHRD-------------FVPNAIMGISQAD-MAILCVDCSTNAFESGFDLDGQTK 160 (483)
T ss_dssp CSSCCCCEEEEECS-SCEEEEECCCCCGG-------------GHHHHHHHHTTCS-EEEEEEECCC------CCCCHHHH
T ss_pred CcceEeeeEEEecC-CceEEEEECCCcHH-------------HHHHHHHhhhhCC-EEEEEEECCCCccccccchhhhHH
Confidence 44444445555554 35799999999732 2445677888887 55566666643 2223
Q ss_pred HHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 221 LWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 221 ~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
+.+.+++... ..+.|.|+||+|+.
T Consensus 161 e~~~~~~~~~--~~~iIvviNK~Dl~ 184 (483)
T 3p26_A 161 EHMLLASSLG--IHNLIIAMNKMDNV 184 (483)
T ss_dssp HHHHHHHHTT--CCCEEEEEECGGGG
T ss_pred HHHHHHHHcC--CCcEEEEEECcCcc
Confidence 2344555542 24689999999985
No 156
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.11 E-value=1e-05 Score=90.13 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=43.1
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc-ch--HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW-CS--SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~-~n--q~il~lar~~Dp~g~RTIgViTK 242 (822)
..++|+||||.. .....+..|+...+ ++|+|++++... .. .+++.+++.+.. .+.|.|+||
T Consensus 75 ~~~~iiDtPGh~-------------~~~~~~~~~~~~~D-~~ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivviNK 138 (403)
T 3sjy_A 75 RRISFIDAPGHE-------------VLMATMLSGAALMD-GAILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQNK 138 (403)
T ss_dssp EEEEEEECCCCG-------------GGHHHHHHHHTTCS-EEEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEEC
T ss_pred ceEEEEECCCcH-------------HHHHHHHHHHhhCC-EEEEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEEC
Confidence 478999999941 12334566778877 555566776544 22 335566666532 478999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 139 ~Dl~ 142 (403)
T 3sjy_A 139 VDVV 142 (403)
T ss_dssp GGGS
T ss_pred cccc
Confidence 9995
No 157
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.11 E-value=3.2e-06 Score=83.19 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..-.|+|||+.++||||||+.+++-.|+
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~ 46 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYV 46 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4458999999999999999999988876
No 158
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.09 E-value=1.2e-06 Score=88.19 Aligned_cols=67 Identities=10% Similarity=0.049 Sum_probs=42.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch---HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS---SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n---q~il~lar~~Dp~g~RTIgViTK 242 (822)
..+.|+||||.-.. ..+...|+++.+ ++++|++++....- ..++..+.+.-+ +.+.|.|+||
T Consensus 64 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK 128 (221)
T 3gj0_A 64 IKFNVWDTAGQEKF-------------GGLRDGYYIQAQ-CAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNK 128 (221)
T ss_dssp EEEEEEEECSGGGT-------------SCCCHHHHTTCC-EEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEEC
T ss_pred EEEEEEeCCChHHH-------------hHHHHHHHhcCC-EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 36889999995322 123456788777 55555665543222 234555555433 6789999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 129 ~Dl~~ 133 (221)
T 3gj0_A 129 VDIKD 133 (221)
T ss_dssp TTSSS
T ss_pred Ccccc
Confidence 99853
No 159
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.08 E-value=6.8e-06 Score=93.35 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=45.1
Q ss_pred EEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccc---------hHHHHHHHH
Q 003415 157 VMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWC---------SSLWLDAIR 227 (822)
Q Consensus 157 ~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~---------nq~il~lar 227 (822)
...++.+. ..++||||||.. .....+..|+...+ ++|+|++++.... ..+.+.+++
T Consensus 77 ~~~~~~~~-~~~~iiDtPGh~-------------~f~~~~~~~~~~aD-~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~ 141 (458)
T 1f60_A 77 LWKFETPK-YQVTVIDAPGHR-------------DFIKNMITGTSQAD-CAILIIAGGVGEFEAGISKDGQTREHALLAF 141 (458)
T ss_dssp CEEEECSS-EEEEEEECCCCT-------------THHHHHHHSSSCCS-EEEEEEECSHHHHHHHTCTTSHHHHHHHHHH
T ss_pred EEEEecCC-ceEEEEECCCcH-------------HHHHHHHhhhhhCC-EEEEEEeCCcCccccccCcchhHHHHHHHHH
Confidence 34444443 369999999942 12344567888888 5556667765431 223344555
Q ss_pred HhCCCCC-cEEEEeeCCCcc
Q 003415 228 EIDPTFR-RTVIVVSKFDNR 246 (822)
Q Consensus 228 ~~Dp~g~-RTIgViTK~D~~ 246 (822)
.. +. ..|.|+||+|+.
T Consensus 142 ~~---~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 142 TL---GVRQLIVAVNKMDSV 158 (458)
T ss_dssp HT---TCCEEEEEEECGGGG
T ss_pred Hc---CCCeEEEEEEccccc
Confidence 43 34 488999999995
No 160
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.07 E-value=3.9e-06 Score=98.46 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=42.9
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~RTIgViTK~ 243 (822)
+.++|+||||...-. .++..|++..+ ++++|++++..+..|. .+++++. .+.+.|.|+||+
T Consensus 70 ~~i~liDTPGhe~F~-------------~~~~r~~~~aD-~aILVvDa~~Gv~~qT~e~l~~l~~---~~vPiIVViNKi 132 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFT-------------TLRKRGGALAD-LAILIVDINEGFKPQTQEALNILRM---YRTPFVVAANKI 132 (594)
T ss_dssp CEEEEECCCTTSCCT-------------TSBCSSSBSCS-EEEEEEETTTCCCHHHHHHHHHHHH---TTCCEEEEEECG
T ss_pred CCEEEEECCCcHHHH-------------HHHHHHHhhCC-EEEEEEECCCCccHhHHHHHHHHHH---cCCeEEEEeccc
Confidence 569999999964321 12335666666 6777777776554443 4555554 467899999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 133 Dl~ 135 (594)
T 1g7s_A 133 DRI 135 (594)
T ss_dssp GGS
T ss_pred ccc
Confidence 984
No 161
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.05 E-value=6.5e-06 Score=94.15 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=44.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~RTIgViTK~ 243 (822)
..++||||||.. .....+..++...+ ++|+|++++..+..|. .+.+++.. +.+.|.|+||+
T Consensus 73 ~~i~iiDtPGh~-------------~~~~~~~~~~~~aD-~~ilVvda~~g~~~qt~e~l~~~~~~---~ip~IvviNK~ 135 (482)
T 1wb1_A 73 YRITLVDAPGHA-------------DLIRAVVSAADIID-LALIVVDAKEGPKTQTGEHMLILDHF---NIPIIVVITKS 135 (482)
T ss_dssp EEEEECCCSSHH-------------HHHHHHHHHTTSCC-EEEEEEETTTCSCHHHHHHHHHHHHT---TCCBCEEEECT
T ss_pred EEEEEEECCChH-------------HHHHHHHHHHhhCC-EEEEEEecCCCccHHHHHHHHHHHHc---CCCEEEEEECC
Confidence 479999999951 23345567788887 5666667776544433 45555554 56779999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 136 Dl~ 138 (482)
T 1wb1_A 136 DNA 138 (482)
T ss_dssp TSS
T ss_pred Ccc
Confidence 995
No 162
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.04 E-value=1.2e-05 Score=93.16 Aligned_cols=74 Identities=12% Similarity=0.055 Sum_probs=48.2
Q ss_pred EEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcE
Q 003415 157 VMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRT 236 (822)
Q Consensus 157 ~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RT 236 (822)
.+.+.+. ...++||||||...- ...+..|+...+ .+|+|+++......+. ..+.+.+...+.+.
T Consensus 74 ~~~~~~~-~~~i~liDTPG~~df-------------~~~~~~~l~~aD-~~IlVvDa~~g~~~~t-~~~~~~~~~~~ipi 137 (529)
T 2h5e_A 74 VMQFPYH-DCLVNLLDTPGHEDF-------------SEDTYRTLTAVD-CCLMVIDAAKGVEDRT-RKLMEVTRLRDTPI 137 (529)
T ss_dssp EEEEEET-TEEEEEECCCCSTTC-------------CHHHHHGGGGCS-EEEEEEETTTCSCHHH-HHHHHHHTTTTCCE
T ss_pred EEEEEEC-CeEEEEEECCCChhH-------------HHHHHHHHHHCC-EEEEEEeCCccchHHH-HHHHHHHHHcCCCE
Confidence 4445443 357999999997321 134567888888 5555666665544433 44445555557889
Q ss_pred EEEeeCCCcc
Q 003415 237 VIVVSKFDNR 246 (822)
Q Consensus 237 IgViTK~D~~ 246 (822)
|.|+||+|+.
T Consensus 138 ivviNK~Dl~ 147 (529)
T 2h5e_A 138 LTFMNKLDRD 147 (529)
T ss_dssp EEEEECTTSC
T ss_pred EEEEcCcCCc
Confidence 9999999984
No 163
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.04 E-value=2e-05 Score=88.80 Aligned_cols=65 Identities=17% Similarity=0.183 Sum_probs=43.1
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~RTIgViTK~ 243 (822)
..++|+||||... ....+..|+...+ ++|+|++++..+..+. .+.+++... ..+.|.|+||+
T Consensus 104 ~~~~iiDtpGh~~-------------f~~~~~~~~~~aD-~~ilVvDa~~g~~~qt~~~l~~~~~~~--~~~iIvviNK~ 167 (434)
T 1zun_B 104 RKFIIADTPGHEQ-------------YTRNMATGASTCD-LAIILVDARYGVQTQTRRHSYIASLLG--IKHIVVAINKM 167 (434)
T ss_dssp EEEEEEECCCSGG-------------GHHHHHHHHTTCS-EEEEEEETTTCSCHHHHHHHHHHHHTT--CCEEEEEEECT
T ss_pred ceEEEEECCChHH-------------HHHHHHHHHhhCC-EEEEEEECCCCCcHHHHHHHHHHHHcC--CCeEEEEEEcC
Confidence 4699999999521 1233456788887 6666667776554433 455666542 23589999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 168 Dl~ 170 (434)
T 1zun_B 168 DLN 170 (434)
T ss_dssp TTT
T ss_pred cCC
Confidence 985
No 164
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.03 E-value=3e-05 Score=76.82 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=24.8
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
...|+|+|+.++||||||++|+|..|+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~ 31 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFN 31 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 458999999999999999999999876
No 165
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.03 E-value=5e-06 Score=99.23 Aligned_cols=65 Identities=18% Similarity=0.048 Sum_probs=43.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~RTIgViTK~ 243 (822)
..++||||||...- ...+..|++..+ .+|+|+++......+. ++..+++ .+.+.|.|+||.
T Consensus 75 ~~i~liDTPG~~df-------------~~~~~~~l~~aD-~~llVvDa~~g~~~~~~~~~~~~~~---~~~p~ilviNK~ 137 (693)
T 2xex_A 75 HRVNIIDTPGHVDF-------------TVEVERSLRVLD-GAVTVLDAQSGVEPQTETVWRQATT---YGVPRIVFVNKM 137 (693)
T ss_dssp EEEEEECCCCCSSC-------------CHHHHHHHHHCS-EEEEEEETTTBSCHHHHHHHHHHHH---TTCCEEEEEECT
T ss_pred eeEEEEECcCCcch-------------HHHHHHHHHHCC-EEEEEECCCCCCcHHHHHHHHHHHH---cCCCEEEEEECC
Confidence 57999999998531 123456676676 6666677765554443 3444443 468999999999
Q ss_pred Cccc
Q 003415 244 DNRL 247 (822)
Q Consensus 244 D~~~ 247 (822)
|+..
T Consensus 138 Dl~~ 141 (693)
T 2xex_A 138 DKLG 141 (693)
T ss_dssp TSTT
T ss_pred Cccc
Confidence 9853
No 166
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.02 E-value=1.4e-05 Score=89.06 Aligned_cols=73 Identities=14% Similarity=0.081 Sum_probs=46.1
Q ss_pred eEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH--HHHHHHHHhCCCC
Q 003415 156 IVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS--LWLDAIREIDPTF 233 (822)
Q Consensus 156 i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq--~il~lar~~Dp~g 233 (822)
..+.++.. ...++|+||||... ....+..|+...+.+ |+|++++.....+ +++.+++.. +
T Consensus 66 ~~~~~~~~-~~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~-ilVvda~~g~~~qt~~~l~~~~~~---~ 127 (405)
T 2c78_A 66 AHVEYETA-KRHYSHVDCPGHAD-------------YIKNMITGAAQMDGA-ILVVSAADGPMPQTREHILLARQV---G 127 (405)
T ss_dssp EEEEEECS-SCEEEEEECCCSGG-------------GHHHHHHHHTTCSSE-EEEEETTTCCCHHHHHHHHHHHHT---T
T ss_pred eeeEeccC-CeEEEEEECCChHH-------------HHHHHHHHHHHCCEE-EEEEECCCCCcHHHHHHHHHHHHc---C
Confidence 34444432 35799999999642 134456778888854 5555666544333 355566554 4
Q ss_pred Cc-EEEEeeCCCcc
Q 003415 234 RR-TVIVVSKFDNR 246 (822)
Q Consensus 234 ~R-TIgViTK~D~~ 246 (822)
.+ .|.|+||.|+.
T Consensus 128 ip~iivviNK~Dl~ 141 (405)
T 2c78_A 128 VPYIVVFMNKVDMV 141 (405)
T ss_dssp CCCEEEEEECGGGC
T ss_pred CCEEEEEEECcccc
Confidence 55 78999999995
No 167
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.00 E-value=1.8e-05 Score=89.10 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.8
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNV 86 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~ 86 (822)
.|+|||+.++||||||+.|+|..++.
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~~~ 58 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDLYS 58 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 47999999999999999999998863
No 168
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.97 E-value=6.3e-06 Score=80.65 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCchhhHHHHHhCC
Q 003415 60 PEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-.|+|||+.++|||||++.|+|.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999995
No 169
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.93 E-value=3.5e-06 Score=96.84 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..|.|+|+|+.++|||||+++|.+..+.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~ 30 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA 30 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc
Confidence 4689999999999999999999986654
No 170
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.93 E-value=4.6e-05 Score=75.22 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=25.4
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCcccc
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFNV 86 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp~ 86 (822)
...|+|||+.++||||||+.|+|..++.
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~ 56 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNL 56 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC
Confidence 4589999999999999999999998873
No 171
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.91 E-value=3.1e-05 Score=79.17 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=43.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc--cch-HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE--WCS-SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D--~~n-q~il~lar~~Dp~g~RTIgViTK 242 (822)
..|.|.||+|-- ..+.|...|++..+.+||+. +.++. +.+ ..|+..++...+.....|.|.||
T Consensus 62 v~l~iwDtaGqe-------------~~~~l~~~~~~~a~~~ilv~-di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK 127 (216)
T 4dkx_A 62 IRLQLWDTAGLE-------------RFRSLIPSYIRDSAAAVVVY-DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 127 (216)
T ss_dssp EEEEEECCSCTT-------------TCGGGHHHHHTTCSEEEEEE-ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEEC
T ss_pred EEEEEEECCCch-------------hhhhHHHHHhccccEEEEEe-ecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeec
Confidence 357899999942 12456788999888665555 33321 111 23555555554446788999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|+..
T Consensus 128 ~Dl~~ 132 (216)
T 4dkx_A 128 TDLAD 132 (216)
T ss_dssp TTCGG
T ss_pred cchHh
Confidence 99853
No 172
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.90 E-value=3e-05 Score=87.35 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=45.2
Q ss_pred EEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcc-------cchHH--HHHHHHHh
Q 003415 159 RAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVE-------WCSSL--WLDAIREI 229 (822)
Q Consensus 159 ~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D-------~~nq~--il~lar~~ 229 (822)
.++.+. ..++|+||||... ....+..|+...+ .+++|++++.. |..|. .+.+++..
T Consensus 78 ~~~~~~-~~~~iiDtpG~~~-------------f~~~~~~~~~~aD-~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~ 142 (435)
T 1jny_A 78 RFETKK-YFFTIIDAPGHRD-------------FVKNMITGASQAD-AAILVVSAKKGEYEAGMSVEGQTREHIILAKTM 142 (435)
T ss_dssp EEECSS-CEEEECCCSSSTT-------------HHHHHHHTSSCCS-EEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT
T ss_pred EEecCC-eEEEEEECCCcHH-------------HHHHHHhhhhhcC-EEEEEEECCCCccccccccchHHHHHHHHHHHc
Confidence 344433 4699999999632 2234567888888 55556666655 44343 34444443
Q ss_pred CCCCCcEEEEeeCCCccc
Q 003415 230 DPTFRRTVIVVSKFDNRL 247 (822)
Q Consensus 230 Dp~g~RTIgViTK~D~~~ 247 (822)
. ..+.|.|+||+|+..
T Consensus 143 ~--~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 143 G--LDQLIVAVNKMDLTE 158 (435)
T ss_dssp T--CTTCEEEEECGGGSS
T ss_pred C--CCeEEEEEEcccCCC
Confidence 2 246889999999954
No 173
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.89 E-value=6e-05 Score=84.10 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=41.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc-c--hHHHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW-C--SSLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~-~--nq~il~lar~~Dp~g~RTIgViTK 242 (822)
..++||||||.. .....+..++...+ ++|+|++|+... . ..+.+.+++.+. ..+.|.|+||
T Consensus 83 ~~i~iiDtPGh~-------------~f~~~~~~~~~~~D-~~ilVvda~~g~~~~qt~e~l~~~~~~~--~~~iivviNK 146 (410)
T 1kk1_A 83 RRVSFIDAPGHE-------------ALMTTMLAGASLMD-GAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNK 146 (410)
T ss_dssp EEEEEEECSSHH-------------HHHHHHHHCGGGCS-EEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEEC
T ss_pred cEEEEEECCChH-------------HHHHHHHhhhhhCC-EEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEEC
Confidence 468999999941 22334456666777 566666777543 2 223455565553 2578899999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
+|+.
T Consensus 147 ~Dl~ 150 (410)
T 1kk1_A 147 IELV 150 (410)
T ss_dssp GGGS
T ss_pred ccCC
Confidence 9995
No 174
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.89 E-value=3.5e-05 Score=85.78 Aligned_cols=65 Identities=17% Similarity=0.135 Sum_probs=43.3
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH--HHHHHHHHhCCCCCc-EEEEee
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS--LWLDAIREIDPTFRR-TVIVVS 241 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq--~il~lar~~Dp~g~R-TIgViT 241 (822)
...++|+||||.. .....+..|++..+ ++++|++++.....| +.+.+++.. +.+ .|.|+|
T Consensus 65 ~~~~~iiDtpG~~-------------~f~~~~~~~~~~aD-~~ilVvda~~g~~~qt~e~l~~~~~~---~vp~iivviN 127 (397)
T 1d2e_A 65 ARHYAHTDCPGHA-------------DYVKNMITGTAPLD-GCILVVAANDGPMPQTREHLLLARQI---GVEHVVVYVN 127 (397)
T ss_dssp SCEEEEEECSSHH-------------HHHHHHHHTSSCCS-EEEEEEETTTCSCHHHHHHHHHHHHT---TCCCEEEEEE
T ss_pred CeEEEEEECCChH-------------HHHHHHHhhHhhCC-EEEEEEECCCCCCHHHHHHHHHHHHc---CCCeEEEEEE
Confidence 3579999999963 12335567888888 555566776554444 344555553 455 689999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|+|+.
T Consensus 128 K~Dl~ 132 (397)
T 1d2e_A 128 KADAV 132 (397)
T ss_dssp CGGGC
T ss_pred CcccC
Confidence 99995
No 175
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.89 E-value=1.3e-05 Score=88.50 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCchhhHHHHHhCC
Q 003415 60 PEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..|++||..|+|||||+|+|+|.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 37999999999999999999987
No 176
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.87 E-value=7.6e-05 Score=83.28 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=41.8
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc-chH--HHHHHHHHhCCCCCcEEEEeeC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW-CSS--LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~-~nq--~il~lar~~Dp~g~RTIgViTK 242 (822)
..++||||||. +.....+..++...+ ++|+|++++... ..| +.+.+++.+. ..+.|.|+||
T Consensus 81 ~~i~iiDtPGh-------------~~f~~~~~~~~~~~D-~~ilVvda~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK 144 (408)
T 1s0u_A 81 RRVSFVDSPGH-------------ETLMATMLSGASLMD-GAILVIAANEPCPQPQTKEHLMALEILG--IDKIIIVQNK 144 (408)
T ss_dssp EEEEEEECSSH-------------HHHHHHHHTTCSCCS-EEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEEC
T ss_pred cEEEEEECCCH-------------HHHHHHHHHhHhhCC-EEEEEEECCCCCCCchhHHHHHHHHHcC--CCeEEEEEEc
Confidence 46899999994 122334456677777 566666777543 222 3444555442 2468999999
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
+|+..
T Consensus 145 ~Dl~~ 149 (408)
T 1s0u_A 145 IDLVD 149 (408)
T ss_dssp TTSSC
T ss_pred cCCCC
Confidence 99953
No 177
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.86 E-value=3.9e-05 Score=91.70 Aligned_cols=67 Identities=19% Similarity=0.082 Sum_probs=44.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
..++||||||... ....+..|+...+ .+|+|++++.....+. ..+.+.+...+.+.|.|+||+|+
T Consensus 82 ~~i~liDTPG~~d-------------f~~~~~~~l~~aD-~aIlVvDa~~gv~~qt-~~~~~~~~~~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 82 HRINIIDTPGHVD-------------FTIEVERSMRVLD-GAVMVYCAVGGVQPQS-ETVWRQANKYKVPRIAFVNKMDR 146 (704)
T ss_pred eeEEEEeCCCccc-------------hHHHHHHHHHHCC-EEEEEEeCCCCCcHHH-HHHHHHHHHcCCCEEEEEeCCCc
Confidence 6799999999742 2345677787777 5566666765554332 22333333446889999999998
Q ss_pred cc
Q 003415 246 RL 247 (822)
Q Consensus 246 ~~ 247 (822)
..
T Consensus 147 ~~ 148 (704)
T 2rdo_7 147 MG 148 (704)
T ss_pred cc
Confidence 53
No 178
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.85 E-value=2.3e-05 Score=91.88 Aligned_cols=64 Identities=22% Similarity=0.079 Sum_probs=43.4
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHH--HHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLW--LDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~i--l~lar~~Dp~g~RTIgViTK~ 243 (822)
..++|+||||...- ...+..++...+ .+|+|++++.....+.. +..+.. .+.+.|.|+||+
T Consensus 73 ~~inliDTPGh~dF-------------~~ev~r~l~~aD-~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKi 135 (600)
T 2ywe_A 73 YKLHLIDTPGHVDF-------------SYEVSRALAACE-GALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKI 135 (600)
T ss_dssp EEEEEECCCCSGGG-------------HHHHHHHHHTCS-EEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECT
T ss_pred EEEEEEECCCcHhH-------------HHHHHHHHHhCC-EEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEecc
Confidence 46899999997431 234566777777 55557777766655542 333333 467899999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 136 Dl~ 138 (600)
T 2ywe_A 136 DLP 138 (600)
T ss_dssp TST
T ss_pred Ccc
Confidence 984
No 179
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.84 E-value=1.3e-05 Score=93.96 Aligned_cols=64 Identities=20% Similarity=0.086 Sum_probs=43.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHH--HHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLW--LDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~i--l~lar~~Dp~g~RTIgViTK~ 243 (822)
..++||||||... ....+..+++.-+ .+|+|++++.....|.. +..+.. .+.+.|.|+||.
T Consensus 71 ~~l~liDTPGh~d-------------F~~ev~~~l~~aD-~aILVVDa~~gv~~qt~~~~~~~~~---~~ipiIvViNKi 133 (599)
T 3cb4_D 71 YQLNFIDTPGHVD-------------FSYEVSRSLAACE-GALLVVDAGQGVEAQTLANCYTAME---MDLEVVPVLNKI 133 (599)
T ss_dssp EEEEEEECCCCGG-------------GHHHHHHHHHHCS-EEEEEEETTTCCCTHHHHHHHHHHH---TTCEEEEEEECT
T ss_pred EEEEEEECCCchH-------------HHHHHHHHHHHCC-EEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEeeecc
Confidence 4689999999742 2234667777777 56666777766555543 333333 367899999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 134 Dl~ 136 (599)
T 3cb4_D 134 DLP 136 (599)
T ss_dssp TST
T ss_pred Ccc
Confidence 984
No 180
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.82 E-value=2.7e-05 Score=92.91 Aligned_cols=65 Identities=18% Similarity=0.086 Sum_probs=44.0
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCcEEEEeeC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~RTIgViTK 242 (822)
...++||||||... ....+..|+...+ .+|+|+++......+. .+..++. .+.+.|.|+||
T Consensus 76 ~~~i~liDTPG~~d-------------f~~~~~~~l~~aD-~~ilVvDa~~g~~~~t~~~~~~~~~---~~~p~ivviNK 138 (691)
T 1dar_A 76 DHRINIIDTPGHVD-------------FTIEVERSMRVLD-GAIVVFDSSQGVEPQSETVWRQAEK---YKVPRIAFANK 138 (691)
T ss_dssp TEEEEEECCCSSTT-------------CHHHHHHHHHHCS-EEEEEEETTTCSCHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred CeEEEEEECcCccc-------------hHHHHHHHHHHCC-EEEEEEECCCCcchhhHHHHHHHHH---cCCCEEEEEEC
Confidence 35799999999742 2345677777777 5566667665544443 3444444 36889999999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
.|+.
T Consensus 139 iD~~ 142 (691)
T 1dar_A 139 MDKT 142 (691)
T ss_dssp TTST
T ss_pred CCcc
Confidence 9985
No 181
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.81 E-value=2.2e-05 Score=86.93 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=39.4
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH--HHHHHHHHhCCCCCcE-EEEee-
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS--LWLDAIREIDPTFRRT-VIVVS- 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq--~il~lar~~Dp~g~RT-IgViT- 241 (822)
..++|+||||... .+.++ ..+++..+.+| +|++ +..+..| +++.+++.. +.+. |.|+|
T Consensus 60 ~~i~iiDtPGh~~------------f~~~~-~~~~~~aD~ai-lVvd-~~g~~~qt~e~~~~~~~~---~i~~~ivvvNN 121 (370)
T 2elf_A 60 RNMVFVDAHSYPK------------TLKSL-ITALNISDIAV-LCIP-PQGLDAHTGECIIALDLL---GFKHGIIALTR 121 (370)
T ss_dssp SEEEEEECTTTTT------------CHHHH-HHHHHTCSEEE-EEEC-TTCCCHHHHHHHHHHHHT---TCCEEEEEECC
T ss_pred eEEEEEECCChHH------------HHHHH-HHHHHHCCEEE-EEEc-CCCCcHHHHHHHHHHHHc---CCCeEEEEEEe
Confidence 3589999999631 23344 34557777454 4555 5556544 355566654 4555 99999
Q ss_pred CCCc
Q 003415 242 KFDN 245 (822)
Q Consensus 242 K~D~ 245 (822)
|+|+
T Consensus 122 K~Dl 125 (370)
T 2elf_A 122 SDST 125 (370)
T ss_dssp GGGS
T ss_pred ccCC
Confidence 9998
No 182
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.80 E-value=4e-05 Score=81.16 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.8
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNV 86 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~ 86 (822)
.++|||..+|||||||++|+|...|.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~ 29 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR 29 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 58999999999999999999998773
No 183
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.79 E-value=0.00025 Score=72.00 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
....|+|||+.++|||||++.++|...
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~ 62 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHD 62 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 346899999999999999999998543
No 184
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.76 E-value=4.3e-05 Score=83.76 Aligned_cols=25 Identities=28% Similarity=0.175 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..+.|+|+|..++||||++++|++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999853
No 185
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.76 E-value=0.0001 Score=84.86 Aligned_cols=69 Identities=17% Similarity=0.321 Sum_probs=41.0
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCc-EEEEeeCCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRR-TVIVVSKFD 244 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~R-TIgViTK~D 244 (822)
.+++||||||..+.. ......+..+. .++ .++ .+|+|++|..... ....++.+... .. ++.|+||+|
T Consensus 184 ~DvvIIDTpG~~~~~-----~~l~~el~~~~-~~i-~pd-~vllVvDa~~g~~---~~~~a~~~~~~-~~i~gvVlNK~D 251 (504)
T 2j37_W 184 FEIIIVDTSGRHKQE-----DSLFEEMLQVA-NAI-QPD-NIVYVMDASIGQA---CEAQAKAFKDK-VDVASVIVTKLD 251 (504)
T ss_dssp CCEEEEEECCCCTTC-----HHHHHHHHHHH-HHH-CCS-EEEEEEETTCCTT---HHHHHHHHHHH-HCCCCEEEECTT
T ss_pred CcEEEEeCCCCcccc-----hhHHHHHHHHH-hhh-cCc-eEEEEEecccccc---HHHHHHHHHhh-cCceEEEEeCCc
Confidence 689999999986521 11222233322 234 566 5577777765432 34555555432 34 588999999
Q ss_pred cc
Q 003415 245 NR 246 (822)
Q Consensus 245 ~~ 246 (822)
..
T Consensus 252 ~~ 253 (504)
T 2j37_W 252 GH 253 (504)
T ss_dssp SC
T ss_pred cc
Confidence 85
No 186
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.75 E-value=2.9e-05 Score=85.86 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
..|++||.+|+|||||+|+|+|..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhh
Confidence 379999999999999999999875
No 187
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.75 E-value=5.9e-05 Score=80.98 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCC-ccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGF-RFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~-~fp 85 (822)
.|+|||+.++||||||+.|.|. -+|
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~ 45 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYP 45 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccC
Confidence 6799999999999999999998 454
No 188
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.75 E-value=2.7e-05 Score=94.80 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=44.4
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
..+.||||||...- ...+..|++..+ .+|+|+++......+. ..+.+.+...+...|.|+||+|+
T Consensus 98 ~~i~liDTPG~~df-------------~~~~~~~l~~aD-~ailVvDa~~g~~~qt-~~~~~~~~~~~~p~ilviNK~D~ 162 (842)
T 1n0u_A 98 FLINLIDSPGHVDF-------------SSEVTAALRVTD-GALVVVDTIEGVCVQT-ETVLRQALGERIKPVVVINKVDR 162 (842)
T ss_dssp EEEEEECCCCCCSS-------------CHHHHHHHHTCS-EEEEEEETTTBSCHHH-HHHHHHHHHTTCEEEEEEECHHH
T ss_pred ceEEEEECcCchhh-------------HHHHHHHHHhCC-EEEEEEeCCCCCCHHH-HHHHHHHHHcCCCeEEEEECCCc
Confidence 46899999997532 234677888887 5556667776655554 22233333346788999999998
Q ss_pred c
Q 003415 246 R 246 (822)
Q Consensus 246 ~ 246 (822)
.
T Consensus 163 ~ 163 (842)
T 1n0u_A 163 A 163 (842)
T ss_dssp H
T ss_pred c
Confidence 5
No 189
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.72 E-value=4.7e-06 Score=97.73 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
..|+|||+.++|||||+++|++..
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~~ 201 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFEL 201 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Confidence 469999999999999999998753
No 190
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.71 E-value=0.00017 Score=81.52 Aligned_cols=72 Identities=17% Similarity=0.283 Sum_probs=47.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
.+++||||||..+.. ......+..+ ...+ .|+ .+|+|++|.. .+++...++.+++...-+..|+||+|.
T Consensus 183 ~DvVIIDTaGrl~~d-----~~lm~el~~i-~~~~-~pd-~vlLVvDA~~---gq~a~~~a~~f~~~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 183 VDIIIVDTAGRHKED-----KALIEEMKQI-SNVI-HPH-EVILVIDGTI---GQQAYNQALAFKEATPIGSIIVTKLDG 251 (443)
T ss_dssp CSEEEEECCCCSSCC-----HHHHHHHHHH-HHHH-CCS-EEEEEEEGGG---GGGHHHHHHHHHHSCTTEEEEEECCSS
T ss_pred CCEEEEECCCcccch-----HHHHHHHHHH-HHhh-cCc-eEEEEEeCCC---chhHHHHHHHHHhhCCCeEEEEECCCC
Confidence 789999999975421 1222333332 2333 355 5677788775 345677788888777788889999998
Q ss_pred ccc
Q 003415 246 RLK 248 (822)
Q Consensus 246 ~~~ 248 (822)
...
T Consensus 252 ~~~ 254 (443)
T 3dm5_A 252 SAK 254 (443)
T ss_dssp CSS
T ss_pred ccc
Confidence 533
No 191
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.67 E-value=0.00014 Score=80.51 Aligned_cols=39 Identities=21% Similarity=0.138 Sum_probs=29.1
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCcccccccccccccceE
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLI 98 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~ 98 (822)
..|++||.+|+|||||+++|+|...+...-..||..|+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~ 40 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNV 40 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccce
Confidence 468999999999999999999976432222346776653
No 192
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.65 E-value=3.8e-05 Score=85.78 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCcccccccccccccce
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPL 97 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~ 97 (822)
-..|++||.+|+|||||+++|+|..+.+..--.||.-|.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~ 60 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN 60 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCce
Confidence 357999999999999999999998764222234566554
No 193
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.65 E-value=0.00017 Score=79.11 Aligned_cols=28 Identities=18% Similarity=0.074 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCcc
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
-+.|.|+++|.+|||||||||+|+|.-.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 4589999999999999999999998643
No 194
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.58 E-value=6.4e-05 Score=85.54 Aligned_cols=64 Identities=19% Similarity=0.154 Sum_probs=35.9
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc---------chHHHHHHHHHhCCCCC-c
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW---------CSSLWLDAIREIDPTFR-R 235 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~---------~nq~il~lar~~Dp~g~-R 235 (822)
..++|+||||... ....+..|+...+ ++|+|++++... ...+.+.+++.. +. +
T Consensus 121 ~~~~iiDtPGh~~-------------f~~~~~~~~~~aD-~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~---~vp~ 183 (467)
T 1r5b_A 121 RRFSLLDAPGHKG-------------YVTNMINGASQAD-IGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINH 183 (467)
T ss_dssp EEEEECCCCC------------------------TTSCS-EEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSS
T ss_pred eEEEEEECCCcHH-------------HHHHHHhhcccCC-EEEEEEeCCcCccccccCCCCcHHHHHHHHHHc---CCCE
Confidence 4789999999621 1233456777787 555566776543 222344455443 44 4
Q ss_pred EEEEeeCCCcc
Q 003415 236 TVIVVSKFDNR 246 (822)
Q Consensus 236 TIgViTK~D~~ 246 (822)
.|.|+||+|+.
T Consensus 184 iivviNK~Dl~ 194 (467)
T 1r5b_A 184 LVVVINKMDEP 194 (467)
T ss_dssp EEEEEECTTST
T ss_pred EEEEEECccCC
Confidence 89999999984
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.55 E-value=2.8e-05 Score=85.96 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=25.9
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCcccccccccccccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRP 96 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P 96 (822)
..|++||.+|+|||||+++|+|-.+.+..-..||+-|
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p 39 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP 39 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc
Confidence 3799999999999999999999775422222356555
No 196
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.53 E-value=0.00014 Score=90.26 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=43.8
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH--HHHHHHHHhCCCCCc-EEEEee
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS--LWLDAIREIDPTFRR-TVIVVS 241 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq--~il~lar~~Dp~g~R-TIgViT 241 (822)
...++||||||.. ....++..|++..+ ++|+|++++.....| +++.+++.. +.+ .|.|+|
T Consensus 358 ~~kI~IIDTPGHe-------------dF~~~mi~gas~AD-~aILVVDAtdGv~~QTrEhL~ll~~l---gIP~IIVVIN 420 (1289)
T 3avx_A 358 TRHYAHVDCPGHA-------------DYVKNMITGAAQMD-GAILVVAATDGPMPQTREHILLGRQV---GVPYIIVFLN 420 (1289)
T ss_dssp SCEEEEEECCCHH-------------HHHHHHHHTSCCCS-EEEEEEETTTCSCTTHHHHHHHHHHH---TCSCEEEEEE
T ss_pred CEEEEEEECCChH-------------HHHHHHHHHHhhCC-EEEEEEcCCccCcHHHHHHHHHHHHc---CCCeEEEEEe
Confidence 3579999999963 22345567888888 555566666544333 355566654 455 689999
Q ss_pred CCCcc
Q 003415 242 KFDNR 246 (822)
Q Consensus 242 K~D~~ 246 (822)
|+|+.
T Consensus 421 KiDLv 425 (1289)
T 3avx_A 421 KCDMV 425 (1289)
T ss_dssp CCTTC
T ss_pred ecccc
Confidence 99995
No 197
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.52 E-value=0.00016 Score=71.40 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCc
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
...|+|||+.++|||||++.++|..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCc
Confidence 4689999999999999999999743
No 198
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.51 E-value=0.00025 Score=79.60 Aligned_cols=28 Identities=25% Similarity=0.448 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..+.++++|..||||||||++|+|..-|
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p 95 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNE 95 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 3457999999999999999999998655
No 199
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.44 E-value=0.00055 Score=77.29 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=43.8
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHH-HhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCC-CcEEEEeeC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVK-SLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTF-RRTVIVVSK 242 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~-~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g-~RTIgViTK 242 (822)
..+++||||||.... +...+..|.. ..+..++ .+|+|++|.... ++...++.+.+.. .-+..|+||
T Consensus 180 ~~D~vIIDT~G~~~~--------~~~l~~~l~~i~~~~~~d-~vllVvda~~g~---~~~~~~~~~~~~~~~i~gvVlnK 247 (432)
T 2v3c_C 180 KADVLIIDTAGRHKE--------EKGLLEEMKQIKEITNPD-EIILVIDGTIGQ---QAGIQAKAFKEAVGEIGSIIVTK 247 (432)
T ss_dssp SCSEEEEECCCSCSS--------HHHHHHHHHHTTSSSCCS-EEEEEEEGGGGG---GHHHHHHHHHTTSCSCEEEEEEC
T ss_pred CCCEEEEcCCCCccc--------cHHHHHHHHHHHHHhcCc-ceeEEeeccccH---HHHHHHHHHhhcccCCeEEEEeC
Confidence 368999999998642 2234444432 1122465 566677776442 4556677776543 338899999
Q ss_pred CCcc
Q 003415 243 FDNR 246 (822)
Q Consensus 243 ~D~~ 246 (822)
+|..
T Consensus 248 ~D~~ 251 (432)
T 2v3c_C 248 LDGS 251 (432)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 9985
No 200
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.44 E-value=0.00023 Score=84.61 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=74.4
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcccccccccccccceEEEEeeCCCCCCCccccccCCccccCCcccchhhHHHHHH
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALDPRCRFQEEDSEEYGSPVVLASAIADIIK 137 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~cTR~P~~i~lr~~~~~~~~~~~i~~~~~~ef~~~~~~~~~l~~~I~ 137 (822)
....|+|+|+.++|||||+++|++...+....|.. .. +..+.+... ...+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V---------~~-------------------g~~~~d~~~--~e~~ 57 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV---------EE-------------------GTTTTDYTP--EAKL 57 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG---------GG-------------------TCCSSCCSH--HHHH
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee---------cC-------------------CcccccCCH--HHHh
Confidence 34679999999999999999999865442111111 00 001111111 1000
Q ss_pred HHHHHHHhccCCccCCCceEEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCccc
Q 003415 138 SRTEALLKKTKTSVSPKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEW 217 (822)
Q Consensus 138 ~a~e~~l~~~g~~fS~~~i~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~ 217 (822)
.+-.+... ...+... -..+.|+||||... ....+..|++..+ .+++|+++...+
T Consensus 58 ---------~giti~~~--~~~~~~~-~~~~nliDTpG~~~-------------f~~~~~~~l~~ad-~~ilVvD~~~g~ 111 (665)
T 2dy1_A 58 ---------HRTTVRTG--VAPLLFR-GHRVFLLDAPGYGD-------------FVGEIRGALEAAD-AALVAVSAEAGV 111 (665)
T ss_dssp ---------TTSCCSCE--EEEEEET-TEEEEEEECCCSGG-------------GHHHHHHHHHHCS-EEEEEEETTTCS
T ss_pred ---------cCCeEEec--ceEEeeC-CEEEEEEeCCCccc-------------hHHHHHHHHhhcC-cEEEEEcCCccc
Confidence 12222222 2333332 35789999999642 1245677777777 445555666544
Q ss_pred chH--HHHHHHHHhCCCCCcEEEEeeCCCcc
Q 003415 218 CSS--LWLDAIREIDPTFRRTVIVVSKFDNR 246 (822)
Q Consensus 218 ~nq--~il~lar~~Dp~g~RTIgViTK~D~~ 246 (822)
..+ .+++.++. .+...|.|+||+|+.
T Consensus 112 ~~qt~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 112 QVGTERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp CHHHHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred chhHHHHHHHHHH---ccCCEEEEecCCchh
Confidence 433 34555554 468899999999985
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.40 E-value=0.00042 Score=71.33 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=24.3
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHh-----CCccc
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALL-----GFRFN 85 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~-----G~~fp 85 (822)
-..+-++++|..++||||+++.|+ |.+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~ 45 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVA 45 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 356788999999999999999998 65544
No 202
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.39 E-value=0.00063 Score=76.47 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCc
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
.+.|++||..+|||||||++|+|..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Confidence 4679999999999999999999975
No 203
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.38 E-value=0.00022 Score=83.39 Aligned_cols=26 Identities=31% Similarity=0.476 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
+.+.|+|||.+|+|||||||+|+|..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 56789999999999999999999976
No 204
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.33 E-value=0.00039 Score=73.99 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
....|+|||.+|+|||||||+|+|....
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCcee
Confidence 3458999999999999999999987643
No 205
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.29 E-value=0.00057 Score=77.19 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=45.0
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D 244 (822)
.+++.||||||..+... .......+..+. ..+ +++ -+++|++|... +++...++.++....-+..|+||.|
T Consensus 179 ~~DvvIIDTaGr~~~~~---d~~lm~el~~i~-~~~-~pd-~vlLVlDa~~g---q~a~~~a~~f~~~~~~~gVIlTKlD 249 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGE---ETKLLEEMKEMY-DVL-KPD-DVILVIDASIG---QKAYDLASRFHQASPIGSVIITKMD 249 (433)
T ss_dssp TCSEEEEEECCCSSSCC---TTHHHHHHHHHH-HHH-CCS-EEEEEEEGGGG---GGGHHHHHHHHHHCSSEEEEEECGG
T ss_pred CCCEEEEECCCCccccC---CHHHHHHHHHHH-Hhh-CCc-ceEEEEeCccc---hHHHHHHHHHhcccCCcEEEEeccc
Confidence 47899999999754111 122333444433 333 344 55666776642 4455666777655567889999999
Q ss_pred cc
Q 003415 245 NR 246 (822)
Q Consensus 245 ~~ 246 (822)
..
T Consensus 250 ~~ 251 (433)
T 3kl4_A 250 GT 251 (433)
T ss_dssp GC
T ss_pred cc
Confidence 85
No 206
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.19 E-value=0.00086 Score=73.01 Aligned_cols=70 Identities=19% Similarity=0.357 Sum_probs=45.1
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
.++.+||++|..+.. ......+..+.+... ++- .+.|+|+.. .++++..++.+.....-|+.|+||.|-
T Consensus 212 ~d~vliDtaG~~~~~-----~~l~~eL~~i~ral~--~de-~llvLDa~t---~~~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 212 IDVVLIDTAGRSETN-----RNLMDEMKKIARVTK--PNL-VIFVGDALA---GNAIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp CSEEEEEECCSCCTT-----TCHHHHHHHHHHHHC--CSE-EEEEEEGGG---TTHHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred chhhHHhhccchhHH-----HHHHHHHHHHHHHhc--CCC-CEEEEecHH---HHHHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 467899999985432 244455555444333 443 455555443 356777888776656778999999997
Q ss_pred c
Q 003415 246 R 246 (822)
Q Consensus 246 ~ 246 (822)
.
T Consensus 281 ~ 281 (328)
T 3e70_C 281 D 281 (328)
T ss_dssp C
T ss_pred c
Confidence 4
No 207
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.18 E-value=0.00054 Score=76.45 Aligned_cols=40 Identities=20% Similarity=0.126 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCCcc-cccccccccccceE
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGFRF-NVREVEMGTRRPLI 98 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~~f-p~r~~g~cTR~P~~ 98 (822)
-..|++||..|+|||||+++|+|..+ .+..--.||+-|+.
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~ 60 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEE 60 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeeccee
Confidence 45899999999999999999999776 32222346777654
No 208
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.14 E-value=0.00013 Score=75.89 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=22.9
Q ss_pred CCCEEEEEcCC---------CCchhhHHHHHhCCc
Q 003415 58 PIPEIVALGGQ---------SDGKSSLLEALLGFR 83 (822)
Q Consensus 58 ~lPqIVVVG~Q---------SsGKSSlLEAL~G~~ 83 (822)
..-.|+|||+. ++||||||++|++-.
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~ 52 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPS 52 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCS
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhcc
Confidence 44589999999 999999999999943
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.14 E-value=0.001 Score=72.59 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.-..++++|..+|||||||++|+|.-.|
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4457899999999999999999986444
No 210
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.08 E-value=0.0013 Score=71.56 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
..+.|+++|..++||||++++|+|.-
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998753
No 211
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.00 E-value=0.0016 Score=70.20 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=43.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
.+..++||+|..+... ....+....-..+.+..+.+|+ .+|+++|+... ++++..++.+......|+.|+||.|.
T Consensus 185 ~d~~llDt~G~~~~~~-~~~~eLs~~r~~iaRal~~~P~-~~lLvLDa~t~---~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKH-NLMEELKKVKRAIAKADPEEPK-EVWLVLDAVTG---QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp CSEEEECCCCCCTTCH-HHHHHHHHHHHHHHHHCTTCCS-EEEEEEETTBC---THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred CCEEEecCCCCCCchH-HHHHHHHHHHHHHHHhhcCCCC-eEEEEEcHHHH---HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 4567999999854321 0011111112233344556676 55557776543 34455555553333569999999997
Q ss_pred ccc
Q 003415 246 RLK 248 (822)
Q Consensus 246 ~~~ 248 (822)
...
T Consensus 260 ~a~ 262 (304)
T 1rj9_A 260 TAK 262 (304)
T ss_dssp SCC
T ss_pred ccc
Confidence 544
No 212
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.92 E-value=0.0021 Score=74.59 Aligned_cols=71 Identities=18% Similarity=0.233 Sum_probs=46.0
Q ss_pred EEEEeecCCCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCC
Q 003415 157 VMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFR 234 (822)
Q Consensus 157 ~L~Ie~p~~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~ 234 (822)
.+.+++.+ ..+.||||||...-. .+ |.+-|.--+ -.|+|++|...+..|. +++.|++ .+-
T Consensus 92 ~~~~~~~~-~~iNlIDTPGHvDF~--------~E-----v~raL~~~D-gAvlVvda~~GV~~qT~~v~~~a~~---~~l 153 (548)
T 3vqt_A 92 VMQFPYRD-RVVNLLDTPGHQDFS--------ED-----TYRVLTAVD-SALVVIDAAKGVEAQTRKLMDVCRM---RAT 153 (548)
T ss_dssp EEEEEETT-EEEEEECCCCGGGCS--------HH-----HHHHHHSCS-EEEEEEETTTBSCHHHHHHHHHHHH---TTC
T ss_pred eEEEEECC-EEEEEEeCCCcHHHH--------HH-----HHHHHHhcC-ceEEEeecCCCcccccHHHHHHHHH---hCC
Confidence 45556643 469999999986432 11 223333445 4556667776776665 4555554 478
Q ss_pred cEEEEeeCCCc
Q 003415 235 RTVIVVSKFDN 245 (822)
Q Consensus 235 RTIgViTK~D~ 245 (822)
+.|.+|||+|+
T Consensus 154 p~i~fINK~Dr 164 (548)
T 3vqt_A 154 PVMTFVNKMDR 164 (548)
T ss_dssp CEEEEEECTTS
T ss_pred ceEEEEecccc
Confidence 99999999998
No 213
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.84 E-value=0.0033 Score=67.39 Aligned_cols=72 Identities=15% Similarity=0.245 Sum_probs=40.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
.+++||||||..+... .......++.+ ...+ .++.++ +|+++.. .+++++.++.+.+...-+..|+||.|.
T Consensus 181 ~D~ViIDTpg~~~~~~---~~~l~~el~~i-~~~~-~~d~vl-lVvda~~---g~~~~~~~~~~~~~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGE---EAALLEEMKNI-YEAI-KPDEVT-LVIDASI---GQKAYDLASKFNQASKIGTIIITKMDG 251 (297)
T ss_dssp CSEEEEECCCSCCTTC---HHHHHHHHHHH-HHHH-CCSEEE-EEEEGGG---GGGHHHHHHHHHHTCTTEEEEEECGGG
T ss_pred CCEEEEeCCCCccccc---HHHHHHHHHHH-HHHh-cCCEEE-EEeeCCc---hHHHHHHHHHHHhhCCCCEEEEeCCCC
Confidence 6899999999865100 00111222222 2333 455444 4555543 245566777776643347789999998
Q ss_pred c
Q 003415 246 R 246 (822)
Q Consensus 246 ~ 246 (822)
.
T Consensus 252 ~ 252 (297)
T 1j8m_F 252 T 252 (297)
T ss_dssp C
T ss_pred C
Confidence 5
No 214
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.81 E-value=0.0016 Score=74.70 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=43.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHH---HHHhcC-CCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSM---VKSLAS-PPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~L---V~~Yik-~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViT 241 (822)
.++.||||+|..+... .....+..+ ++.... .|+.++| |+++.. .+.++..++.+.....-|..|+|
T Consensus 376 ~DvVLIDTaGrl~~~~-----~lm~EL~kiv~iar~l~~~~P~evLL-vLDatt---Gq~al~~ak~f~~~~~itgvIlT 446 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKS-----HLMEELKKIVRVMKKLDVEAPHEVML-TIDAST---GQNAVSQAKLFHEAVGLTGITLT 446 (503)
T ss_dssp CSEEEECCCCSCCCHH-----HHHHHHHHHHHHHHTTCTTCSSEEEE-EEEGGG---THHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCEEEEeCCCccchhh-----hHHHHHHHHHHHHHHhccCCCCeeEE-EecCcc---cHHHHHHHHHHHhhcCCCEEEEE
Confidence 4688999999864321 122223333 333322 3555555 555543 25566777777655567889999
Q ss_pred CCCcccc
Q 003415 242 KFDNRLK 248 (822)
Q Consensus 242 K~D~~~~ 248 (822)
|.|-...
T Consensus 447 KLD~tak 453 (503)
T 2yhs_A 447 KLDGTAK 453 (503)
T ss_dssp CGGGCSC
T ss_pred cCCCccc
Confidence 9997433
No 215
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.73 E-value=0.00046 Score=81.54 Aligned_cols=64 Identities=22% Similarity=0.211 Sum_probs=42.9
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~RTIgViTK~ 243 (822)
..++||||||-..- .. -|.+-+.--+ -.|+|++|...+..|. +++.|++. +-+.|.+|||+
T Consensus 67 ~~iNlIDTPGH~DF---------~~----Ev~raL~~~D-gavlVVDa~~GV~~qT~~v~~~a~~~---~lp~i~~INKm 129 (638)
T 3j25_A 67 TKVNIIDTPGHMDF---------LA----EVYRSLSVLD-GAILLISAKDGVQAQTRILFHALRKM---GIPTIFFINKI 129 (638)
T ss_dssp CBCCCEECCCSSST---------HH----HHHHHHTTCS-EEECCEESSCTTCSHHHHHHHHHHHH---TCSCEECCEEC
T ss_pred EEEEEEECCCcHHH---------HH----HHHHHHHHhC-EEEEEEeCCCCCcHHHHHHHHHHHHc---CCCeEEEEecc
Confidence 46899999997532 11 1344455556 4556667776776665 55556554 67889999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|..
T Consensus 130 Dr~ 132 (638)
T 3j25_A 130 DQN 132 (638)
T ss_dssp CSS
T ss_pred ccc
Confidence 984
No 216
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.71 E-value=0.00095 Score=70.26 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=23.5
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..|+|||.+++|||||||+|+|..+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~ 125 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS 125 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc
Confidence 69999999999999999999987764
No 217
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.71 E-value=0.0018 Score=77.43 Aligned_cols=64 Identities=17% Similarity=0.087 Sum_probs=41.5
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHH--HHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSL--WLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~--il~lar~~Dp~g~RTIgViTK~ 243 (822)
..+.||||||-..-. ..| .+-+.--+ -.|+|+||...+..|. +++.|.+ .+-+.|.||||+
T Consensus 85 ~~iNlIDTPGHvDF~---------~Ev----~~aLr~~D-gavlvVDaveGV~~qT~~v~~~a~~---~~lp~i~~iNKi 147 (709)
T 4fn5_A 85 YRVNVIDTPGHVDFT---------IEV----ERSLRVLD-GAVVVFCGTSGVEPQSETVWRQANK---YGVPRIVYVNKM 147 (709)
T ss_dssp EEEEEECCCSCTTCH---------HHH----HHHHHHCS-EEEEEEETTTCSCHHHHHHHHHHHH---HTCCEEEEEECS
T ss_pred EEEEEEeCCCCcccH---------HHH----HHHHHHhC-eEEEEEECCCCCchhHHHHHHHHHH---cCCCeEEEEccc
Confidence 358999999975321 222 22233234 4556677877777665 4555544 478999999999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|+.
T Consensus 148 Dr~ 150 (709)
T 4fn5_A 148 DRQ 150 (709)
T ss_dssp SST
T ss_pred ccc
Confidence 984
No 218
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.67 E-value=0.0037 Score=70.56 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=41.4
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHH-HhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVK-SLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~-~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D 244 (822)
.+++||||||.... ....+..|.. .++..+..++ +|+++... +++...++.+++...-+-.|+||.|
T Consensus 184 ~D~VIIDTpG~l~~--------~~~l~~~L~~~~~~~~p~~vl-lVvda~~g---~~~~~~~~~f~~~l~i~gvVlnK~D 251 (433)
T 2xxa_A 184 YDVLLVDTAGRLHV--------DEAMMDEIKQVHASINPVETL-FVVDAMTG---QDAANTAKAFNEALPLTGVVLTKVD 251 (433)
T ss_dssp CSEEEEECCCCCTT--------CHHHHHHHHHHHHHSCCSEEE-EEEETTBC---TTHHHHHHHHHHHSCCCCEEEECTT
T ss_pred CCEEEEECCCcccc--------cHHHHHHHHHHHHhhcCccee-EEeecchh---HHHHHHHHHHhccCCCeEEEEecCC
Confidence 68999999997542 1223333332 3344666554 45566532 4456667777653333556999999
Q ss_pred cc
Q 003415 245 NR 246 (822)
Q Consensus 245 ~~ 246 (822)
..
T Consensus 252 ~~ 253 (433)
T 2xxa_A 252 GD 253 (433)
T ss_dssp SS
T ss_pred CC
Confidence 84
No 219
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.58 E-value=0.0054 Score=66.05 Aligned_cols=76 Identities=21% Similarity=0.265 Sum_probs=42.3
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHH---HHhcC-CCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEe
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMV---KSLAS-PPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVV 240 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV---~~Yik-~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgVi 240 (822)
.+++.|||+||..... ....+.+..+. ...+. .|+ -+++|+++. ..+++++.++.+.....-+-.|+
T Consensus 186 ~~dvvIiDtpg~~~~~-----~~l~~eL~~l~~~i~~~i~~~p~-~vllVlda~---t~~~~l~~a~~~~~~~~i~gvVl 256 (306)
T 1vma_A 186 NKDVVIIDTAGRLHTK-----KNLMEELRKVHRVVKKKIPDAPH-ETLLVIDAT---TGQNGLVQAKIFKEAVNVTGIIL 256 (306)
T ss_dssp TCSEEEEEECCCCSCH-----HHHHHHHHHHHHHGGGTCTTCCS-EEEEEEEGG---GHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCEEEEECCCchhhH-----HHHHHHHHHHHHHHhhccCCCCc-EEEEEEECC---CCHHHHHHHHHHHhcCCCCEEEE
Confidence 4789999999963211 11222233322 22233 355 455566765 23455566666654344566789
Q ss_pred eCCCccccc
Q 003415 241 SKFDNRLKE 249 (822)
Q Consensus 241 TK~D~~~~~ 249 (822)
||.|-....
T Consensus 257 Tk~D~~~~g 265 (306)
T 1vma_A 257 TKLDGTAKG 265 (306)
T ss_dssp ECGGGCSCT
T ss_pred eCCCCccch
Confidence 999985443
No 220
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.45 E-value=0.01 Score=63.54 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=41.8
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcC--CCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLAS--PPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik--~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK 242 (822)
.+++.||||||+... ....+.+|.+ .+. .++ -+++|++++.+ ..++.++++.+.. ...+-.|+||
T Consensus 182 ~~dlvIiDT~G~~~~--------~~~~~~el~~-~l~~~~~~-~~~lVl~at~~--~~~~~~~~~~~~~-l~~~giVltk 248 (296)
T 2px0_A 182 EYDHVFVDTAGRNFK--------DPQYIDELKE-TIPFESSI-QSFLVLSATAK--YEDMKHIVKRFSS-VPVNQYIFTK 248 (296)
T ss_dssp GSSEEEEECCCCCTT--------SHHHHHHHHH-HSCCCTTE-EEEEEEETTBC--HHHHHHHTTTTSS-SCCCEEEEEC
T ss_pred CCCEEEEeCCCCChh--------hHHHHHHHHH-HHhhcCCC-eEEEEEECCCC--HHHHHHHHHHHhc-CCCCEEEEeC
Confidence 379999999998532 2234444433 343 233 35666666643 2455666666653 3345568899
Q ss_pred CCccc
Q 003415 243 FDNRL 247 (822)
Q Consensus 243 ~D~~~ 247 (822)
.|...
T Consensus 249 ~D~~~ 253 (296)
T 2px0_A 249 IDETT 253 (296)
T ss_dssp TTTCS
T ss_pred CCccc
Confidence 99853
No 221
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.43 E-value=0.0098 Score=64.79 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=42.2
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchH--H---HHHHHHHhCCCCCcEEEEe
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSS--L---WLDAIREIDPTFRRTVIVV 240 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq--~---il~lar~~Dp~g~RTIgVi 240 (822)
..|.|.||||--.-.. .. + +...|.+..+. +++|.+.++.+.+. . ++..+++..| +-..+.|.
T Consensus 46 v~LqIWDTAGQErf~~----~~----l--~~~~yyr~a~~-~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~-~ipillvg 113 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFE----PS----Y--DSERLFKSVGA-LVYVIDSQDEYINAITNLAMIIEYAYKVNP-SINIEVLI 113 (331)
T ss_dssp SCEEEEECCSCSSSCC----CS----H--HHHHHHTTCSE-EEEECCCSSCTTHHHHHHHHHHHHHHHHCT-TCEEEEEC
T ss_pred EEEEEEECCCchhccc----hh----h--hhhhhccCCCE-EEEEEECCchHHHHHHHHHHHHHHHhhcCC-CCcEEEEE
Confidence 6799999999532110 00 1 35678888874 55555665443221 1 2334445556 57889999
Q ss_pred eCCCcc
Q 003415 241 SKFDNR 246 (822)
Q Consensus 241 TK~D~~ 246 (822)
||.|+.
T Consensus 114 NK~DL~ 119 (331)
T 3r7w_B 114 HKVDGL 119 (331)
T ss_dssp CCCCSS
T ss_pred ECcccC
Confidence 999995
No 222
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.24 E-value=0.0026 Score=72.05 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
+.--|.|||.+++|||+|||.|+|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4446888999999999999999986
No 223
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.93 E-value=0.012 Score=66.13 Aligned_cols=68 Identities=19% Similarity=0.291 Sum_probs=42.3
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHH--HHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMV--KSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKF 243 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV--~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~ 243 (822)
.+++||||||..+. +...+.++. ...+ .++.+ |+|+++.. .+++...++.+++...-+-.|+||.
T Consensus 181 ~DvVIIDTaG~l~~--------d~~l~~el~~i~~~~-~pd~v-lLVvDa~t---gq~av~~a~~f~~~l~i~GVIlTKl 247 (425)
T 2ffh_A 181 RDLILVDTAGRLQI--------DEPLMGELARLKEVL-GPDEV-LLVLDAMT---GQEALSVARAFDEKVGVTGLVLTKL 247 (425)
T ss_dssp CSEEEEECCCCSSC--------CHHHHHHHHHHHHHH-CCSEE-EEEEEGGG---TTHHHHHHHHHHHHTCCCEEEEESG
T ss_pred CCEEEEcCCCcccc--------cHHHHHHHHHhhhcc-CCceE-EEEEeccc---hHHHHHHHHHHHhcCCceEEEEeCc
Confidence 68999999997543 122333332 2223 45545 45566653 3666777887766544577799999
Q ss_pred Ccc
Q 003415 244 DNR 246 (822)
Q Consensus 244 D~~ 246 (822)
|..
T Consensus 248 D~~ 250 (425)
T 2ffh_A 248 DGD 250 (425)
T ss_dssp GGC
T ss_pred CCc
Confidence 974
No 224
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.76 E-value=0.027 Score=60.86 Aligned_cols=74 Identities=19% Similarity=0.283 Sum_probs=41.9
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHH---HHHHHHhcC-CCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEee
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEI---LSMVKSLAS-PPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVS 241 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v---~~LV~~Yik-~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViT 241 (822)
.+++||||||...... .....+ ..++...+. .++ -+++|+++... +..++.++.+.+...-+=.|+|
T Consensus 192 yD~VIIDTpg~l~~~~-----~l~~eL~~~~~vi~~~~p~~~d-~vllVl~a~~~---~~~l~~~~~~~~~~~i~GvVlt 262 (320)
T 1zu4_A 192 YDLLLIDTAGRLQNKT-----NLMAELEKMNKIIQQVEKSAPH-EVLLVIDATTG---QNGVIQAEEFSKVADVSGIILT 262 (320)
T ss_dssp CSEEEEECCCCGGGHH-----HHHHHHHHHHHHHHTTCTTCCS-EEEEEEEGGGT---HHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCEEEEcCCCcccccH-----HHHHHHHHHHHHHhcccCCCCc-eEEEEEECCCc---HHHHHHHHHHhhcCCCcEEEEe
Confidence 7899999999865321 111112 222222232 244 44566666532 5566667778765444445889
Q ss_pred CCCcccc
Q 003415 242 KFDNRLK 248 (822)
Q Consensus 242 K~D~~~~ 248 (822)
|.|....
T Consensus 263 k~d~~~~ 269 (320)
T 1zu4_A 263 KMDSTSK 269 (320)
T ss_dssp CGGGCSC
T ss_pred CCCCCCc
Confidence 9997433
No 225
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.83 E-value=0.043 Score=58.53 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=40.1
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCc
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDN 245 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~ 245 (822)
++++|||+||.... .......+..+.. .+ .+..++ +|+++.. .+++++.++.+.+...-+=.|+||.|.
T Consensus 181 ~D~viiDtpp~~~~-----d~~~~~~l~~~~~-~~-~~~~~~-lv~~~~~---~~~~~~~~~~~~~~~~i~givlnk~d~ 249 (295)
T 1ls1_A 181 RDLILVDTAGRLQI-----DEPLMGELARLKE-VL-GPDEVL-LVLDAMT---GQEALSVARAFDEKVGVTGLVLTKLDG 249 (295)
T ss_dssp CCEEEEECCCCSSC-----CHHHHHHHHHHHH-HH-CCSEEE-EEEEGGG---THHHHHHHHHHHHHTCCCEEEEECGGG
T ss_pred CCEEEEeCCCCccc-----cHHHHHHHHHHhh-hc-CCCEEE-EEEeCCC---cHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 79999999987532 1111222333322 22 355554 5555553 255666677766543334468999998
Q ss_pred cc
Q 003415 246 RL 247 (822)
Q Consensus 246 ~~ 247 (822)
..
T Consensus 250 ~~ 251 (295)
T 1ls1_A 250 DA 251 (295)
T ss_dssp CS
T ss_pred Cc
Confidence 53
No 226
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.31 E-value=0.062 Score=59.15 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=22.6
Q ss_pred CCE-EEEEcCCCCchhhHHHHHhCCccc
Q 003415 59 IPE-IVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 59 lPq-IVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-|+ |++||.++|||||++..|+|.--|
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 354 669999999999999999997433
No 227
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.19 E-value=0.041 Score=59.01 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-|++||.++|||||++..|+|.--|
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4669999999999999999998444
No 228
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.87 E-value=0.079 Score=52.59 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
..|.|+|+|..++||||++++|++..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999999763
No 229
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.89 E-value=0.056 Score=53.89 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
..|.|+|+|+.++|||||++.|++..|.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 5789999999999999999999987554
No 230
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=90.97 E-value=0.09 Score=51.26 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=20.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+++|..+||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999985
No 231
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.93 E-value=0.11 Score=55.23 Aligned_cols=25 Identities=32% Similarity=0.049 Sum_probs=23.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..++||||||++|+|..-|
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred eEEEECCCCCcHHHHHHHhcccccc
Confidence 6789999999999999999998766
No 232
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.82 E-value=0.093 Score=52.15 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-++|||..+||||||++.|+|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999996
No 233
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.82 E-value=0.12 Score=53.08 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4789999999999999999998666
No 234
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.81 E-value=0.094 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
-++++|..+||||||+++|+|.-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999973
No 235
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.78 E-value=0.12 Score=52.81 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3679999999999999999998655
No 236
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.47 E-value=0.1 Score=52.08 Aligned_cols=20 Identities=45% Similarity=0.649 Sum_probs=18.9
Q ss_pred EEEEcCCCCchhhHHHHHhC
Q 003415 62 IVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 62 IVVVG~QSsGKSSlLEAL~G 81 (822)
|||+|+++|||+||+++|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999974
No 237
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.31 E-value=0.15 Score=52.51 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQP 54 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4679999999999999999998655
No 238
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.28 E-value=0.13 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+++|..+||||||++.|+|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999997
No 239
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.24 E-value=0.11 Score=52.91 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=21.1
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
-++|+|..+||||||+++|+|..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999999964
No 240
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.18 E-value=0.15 Score=52.70 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||..|+|.--|
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999999655
No 241
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.15 E-value=0.12 Score=52.15 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.---||++|..++|||||+++|.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3346899999999999999999975
No 242
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.13 E-value=0.15 Score=51.79 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3679999999999999999998655
No 243
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.10 E-value=0.12 Score=50.67 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+++|..+||||||++.|+|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999999997
No 244
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.08 E-value=0.15 Score=55.96 Aligned_cols=24 Identities=46% Similarity=0.541 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
.++++|..++||||||++|+|..-
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999999865
No 245
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=89.97 E-value=0.12 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.8
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
-|+|+|.++||||||++.|.|.-
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999974
No 246
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.97 E-value=0.16 Score=52.66 Aligned_cols=49 Identities=24% Similarity=0.529 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCCcEEEEEec-CCcccchH-HHHHHHHHhCCCCCcEEEEeeC
Q 003415 191 EILSMVKSLASPPHRILVFLQQ-SSVEWCSS-LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 191 ~v~~LV~~Yik~~~sIILaVv~-A~~D~~nq-~il~lar~~Dp~g~RTIgViTK 242 (822)
+--.+.+..+.+|. |+|+=.| +.-|..+. .++++.+++. . ..||.++|.
T Consensus 152 qRv~iAraL~~~p~-lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH 202 (247)
T 2ff7_A 152 QRIAIARALVNNPK-ILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAH 202 (247)
T ss_dssp HHHHHHHHHTTCCS-EEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECS
T ss_pred HHHHHHHHHhcCCC-EEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeC
Confidence 34466778888887 6655554 33455544 4677777773 3 579999997
No 247
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.87 E-value=0.17 Score=51.85 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4779999999999999999999655
No 248
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.82 E-value=0.17 Score=52.75 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999999655
No 249
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.79 E-value=0.18 Score=53.00 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||++|+|.--|
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4679999999999999999998655
No 250
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.79 E-value=0.17 Score=53.01 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||..|+|.--|
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3679999999999999999998655
No 251
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.79 E-value=0.16 Score=53.27 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=23.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVR 87 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r 87 (822)
-++++|..+|||||||+.|+|.- |..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~-p~~ 57 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL-PYS 57 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS-CCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CCC
Confidence 46799999999999999999998 743
No 252
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=89.79 E-value=0.13 Score=50.27 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEEcCCCCchhhHHHHHhCCc
Q 003415 62 IVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 62 IVVVG~QSsGKSSlLEAL~G~~ 83 (822)
|+++|..+||||||++.|+|.-
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999999963
No 253
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.78 E-value=0.16 Score=49.07 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCcc
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
+.-.-.+|+|..+|||||||+||.+.=.
T Consensus 24 ~~~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 24 FSKGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CCSSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3334789999999999999999987543
No 254
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=89.64 E-value=0.074 Score=57.28 Aligned_cols=25 Identities=36% Similarity=0.173 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..++|||||||+|+|..-|
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~~~ 199 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPELGL 199 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC----
T ss_pred EEEEECCCCCCHHHHHHHhcccccc
Confidence 7899999999999999999998654
No 255
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.60 E-value=0.15 Score=52.38 Aligned_cols=25 Identities=40% Similarity=0.369 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999999655
No 256
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.59 E-value=0.18 Score=51.96 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999998655
No 257
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.57 E-value=0.16 Score=49.98 Aligned_cols=25 Identities=28% Similarity=0.366 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..|.|+|+|..+||||||+++|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3689999999999999999999985
No 258
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=89.44 E-value=0.17 Score=50.43 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+++|..+||||||++.|++.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999999986
No 259
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.32 E-value=0.17 Score=52.53 Aligned_cols=49 Identities=8% Similarity=0.096 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCCCcEEEEEecC-CcccchH-HHHHHHHHhCCCCCcEEEEeeC
Q 003415 192 ILSMVKSLASPPHRILVFLQQS-SVEWCSS-LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 192 v~~LV~~Yik~~~sIILaVv~A-~~D~~nq-~il~lar~~Dp~g~RTIgViTK 242 (822)
--.+++..+.+|. |+|+=.|. .-|..+. .++++.+++-. ...||.++|+
T Consensus 151 rv~iAraL~~~p~-lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtH 201 (250)
T 2d2e_A 151 RNEILQLLVLEPT-YAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITH 201 (250)
T ss_dssp HHHHHHHHHHCCS-EEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECS
T ss_pred HHHHHHHHHcCCC-EEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEec
Confidence 3456677778887 66666653 3455544 46777777733 3579999997
No 260
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.32 E-value=0.19 Score=52.86 Aligned_cols=50 Identities=14% Similarity=0.264 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCCCcEEEEEecC-CcccchH-HHHHHHHHhCCCCCcEEEEeeC
Q 003415 192 ILSMVKSLASPPHRILVFLQQS-SVEWCSS-LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 192 v~~LV~~Yik~~~sIILaVv~A-~~D~~nq-~il~lar~~Dp~g~RTIgViTK 242 (822)
--.+.+..+.+|. |+|+=.|. .-|..+. .++++.+++-....+||.++|.
T Consensus 164 Rv~lAraL~~~p~-lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtH 215 (271)
T 2ixe_A 164 AVALARALIRKPR-LLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215 (271)
T ss_dssp HHHHHHHHTTCCS-EEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECS
T ss_pred HHHHHHHHhcCCC-EEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 3466677888887 66665553 3455544 4667777764334678888886
No 261
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.27 E-value=0.15 Score=51.53 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
-++|||..+||||||++.|+|..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37899999999999999999965
No 262
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=89.25 E-value=0.26 Score=55.87 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=18.6
Q ss_pred CCEEEEEcCCCCchhhHHHHHh
Q 003415 59 IPEIVALGGQSDGKSSLLEALL 80 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~ 80 (822)
+--|.|+|.+++|||.|||.|+
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 3356689999999999999776
No 263
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.24 E-value=0.19 Score=52.43 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~p 67 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIKP 67 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4679999999999999999999655
No 264
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.16 E-value=0.2 Score=53.01 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 4689999999999999999998655
No 265
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.13 E-value=0.19 Score=51.30 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCchhhHHHHHh---CCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALL---GFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~---G~~fp 85 (822)
.-|+|+|..+|||||++..|+ |...|
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 479999999999999999999 98776
No 266
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.12 E-value=0.2 Score=52.58 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 4679999999999999999999655
No 267
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.09 E-value=0.2 Score=52.42 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4679999999999999999998655
No 268
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=88.97 E-value=0.16 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.++++|..+|||||||..|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999996
No 269
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.87 E-value=0.21 Score=51.93 Aligned_cols=25 Identities=40% Similarity=0.573 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999999655
No 270
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.75 E-value=0.12 Score=52.19 Aligned_cols=29 Identities=21% Similarity=0.087 Sum_probs=24.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccccccccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNVREVEMG 92 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~r~~g~c 92 (822)
-++++|..+|||||||..|+|. -| .. |.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl-~p-~~-G~I 52 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ-AL-QS-KQV 52 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH-HH-HT-TSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC-CC-cC-Cee
Confidence 4789999999999999999999 44 43 444
No 271
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=88.73 E-value=0.17 Score=48.98 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNV 86 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~ 86 (822)
-++++|+.+||||||+.+|+|.- |.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l-~~ 59 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI-GH 59 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT-TC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC-CC
Confidence 46799999999999999999986 63
No 272
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.58 E-value=0.25 Score=47.10 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=21.1
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhC
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G 81 (822)
++-+-.+|+|+.++||||+|+||.-
T Consensus 21 f~~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 21 FKEGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3445789999999999999999973
No 273
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.58 E-value=0.22 Score=51.74 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4679999999999999999999655
No 274
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.54 E-value=0.23 Score=52.53 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4679999999999999999998655
No 275
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=88.41 E-value=0.17 Score=50.07 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.-.-|+|+|..+||||||.+.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4456899999999999999999863
No 276
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.37 E-value=0.23 Score=51.92 Aligned_cols=48 Identities=21% Similarity=0.506 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCCcEEEEEecC-CcccchH-HHHHHHHHhCCCCCcEEEEeeC
Q 003415 192 ILSMVKSLASPPHRILVFLQQS-SVEWCSS-LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 192 v~~LV~~Yik~~~sIILaVv~A-~~D~~nq-~il~lar~~Dp~g~RTIgViTK 242 (822)
--.+.+..+.+|. |+|+=.|. .-|..+. .+.++.+++.. .+||.++|+
T Consensus 163 Rv~lAraL~~~p~-lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tviivtH 212 (260)
T 2ghi_A 163 RIAIARCLLKDPK-IVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAH 212 (260)
T ss_dssp HHHHHHHHHHCCS-EEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEEECS
T ss_pred HHHHHHHHHcCCC-EEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEcC
Confidence 3466677788887 66665553 3455443 46677777743 479999997
No 277
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.33 E-value=0.21 Score=52.36 Aligned_cols=49 Identities=10% Similarity=0.223 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCCCcEEEEEecC-CcccchH-HHHHHHHHhCCCCCcEEEEeeC
Q 003415 192 ILSMVKSLASPPHRILVFLQQS-SVEWCSS-LWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 192 v~~LV~~Yik~~~sIILaVv~A-~~D~~nq-~il~lar~~Dp~g~RTIgViTK 242 (822)
--.+++..+.+|. |+|+=.|. .-|..+. .++++.+++-. ...||.++|.
T Consensus 172 Rv~iAraL~~~p~-lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtH 222 (267)
T 2zu0_C 172 RNDILQMAVLEPE-LCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTH 222 (267)
T ss_dssp HHHHHHHHHHCCS-EEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECS
T ss_pred HHHHHHHHHhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEee
Confidence 3456677777887 66666653 3455544 46677777633 3579999997
No 278
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=88.12 E-value=0.22 Score=48.65 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=22.1
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-|+++|..+|||||+++.|.+.-.|
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999997534
No 279
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=88.12 E-value=0.21 Score=47.52 Aligned_cols=47 Identities=19% Similarity=0.107 Sum_probs=33.4
Q ss_pred ccccCcchhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 28 SATDSASTRASRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 28 ~~~l~s~~~~~Lld~id~Lr~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
...|....+..++.++..+ .-.-++++|..++|||+|+.+|.|.-.+
T Consensus 16 ~~~f~~g~n~~~~~~l~~~-----------~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 16 FDKFLGTENAELVYVLRHK-----------HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCCCCSCCTHHHHHHCCCC-----------CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred hhhcCcCccHHHHHHHHhc-----------CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3455555555555554443 3457899999999999999999996543
No 280
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=88.02 E-value=0.21 Score=47.58 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+++|..+||||||+..|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 281
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=87.93 E-value=0.19 Score=49.60 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+++|..+||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999996
No 282
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=87.53 E-value=0.29 Score=50.49 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=24.3
Q ss_pred CEEEEEcCCCCchhhHHHHHh---CCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALL---GFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~---G~~fp 85 (822)
..|+++|..+||||||+..|. |+.++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 479999999999999999999 99887
No 283
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.40 E-value=0.24 Score=53.26 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+++||..+|||||||..|+|+--|
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred EEEEECCCCchHHHHHHHHHcCCCC
Confidence 5889999999999999999998666
No 284
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.25 E-value=0.16 Score=49.91 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=23.1
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
+.|+|||..+||||||++.|+|.--|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57899999999999999999998444
No 285
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.92 E-value=0.28 Score=52.21 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4679999999999999999999655
No 286
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=86.81 E-value=0.27 Score=53.15 Aligned_cols=25 Identities=20% Similarity=0.589 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++|+|..+|||||+|++|+|.--|
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4799999999999999999998533
No 287
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.65 E-value=0.26 Score=51.49 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=21.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++|+|..+|||||+|.+|+|.--|
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhCCC
Confidence 4789999999999999999997433
No 288
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=86.63 E-value=0.28 Score=47.66 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=19.0
Q ss_pred EEEEcCCCCchhhHHHHHhC
Q 003415 62 IVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 62 IVVVG~QSsGKSSlLEAL~G 81 (822)
|+++|..+||||||+..|++
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 68999999999999999987
No 289
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=86.63 E-value=0.25 Score=49.83 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=15.0
Q ss_pred EEEEEcCCCCchhhHHHHHh-CC
Q 003415 61 EIVALGGQSDGKSSLLEALL-GF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~-G~ 82 (822)
-|+++|..+||||||++.|. |.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999999 87
No 290
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=86.60 E-value=0.27 Score=48.45 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCchhhHHHHHhCC
Q 003415 60 PEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.-|+++|..+||||||++.|.|.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 36889999999999999999864
No 291
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.59 E-value=0.3 Score=53.43 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=21.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
-|+|+|..+|||||+|++|+|.-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999999974
No 292
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.54 E-value=0.23 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
.++|||+.+||||||+..|+|+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 57899999999999999999975
No 293
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=86.38 E-value=0.37 Score=51.27 Aligned_cols=24 Identities=29% Similarity=0.158 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..++||||||++|+ ..-|
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhC
Confidence 68999999999999999999 5433
No 294
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=86.38 E-value=0.36 Score=52.96 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4789999999999999999999666
No 295
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=86.34 E-value=0.3 Score=46.74 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+++|..+|||||++..|.+.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5899999999999999999753
No 296
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=86.28 E-value=0.34 Score=46.77 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=18.3
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-+++||..+||||||++++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 467999999999999998654
No 297
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=86.08 E-value=0.38 Score=52.93 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCchHHHHHHHHhcCCCC
Confidence 3679999999999999999999666
No 298
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=86.00 E-value=0.39 Score=52.79 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||..|+|.--|
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCCC
Confidence 4679999999999999999999666
No 299
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=85.94 E-value=0.37 Score=53.01 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=22.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||++|+|.--|
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCchHHHHHHHHhcCCCC
Confidence 3679999999999999999999766
No 300
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=85.85 E-value=0.39 Score=52.62 Aligned_cols=25 Identities=36% Similarity=0.312 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhC
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G 81 (822)
++.+-.+|+|+.+|||||+||||+.
T Consensus 21 ~~~g~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 21 FQSGITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4556789999999999999999983
No 301
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=85.75 E-value=0.4 Score=52.87 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEEP 55 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCCC
Confidence 4789999999999999999999665
No 302
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=85.64 E-value=0.39 Score=45.24 Aligned_cols=22 Identities=23% Similarity=0.092 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
.-|+|+|..+|||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999974
No 303
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.52 E-value=0.58 Score=50.05 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCcc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
.+|.++++|+.++|||+++.+|.+.=+
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 456699999999999999999998644
No 304
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=85.50 E-value=0.33 Score=53.06 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Confidence 4689999999999999999999766
No 305
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=85.37 E-value=0.43 Score=52.69 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||..|+|.--|
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Confidence 4679999999999999999999666
No 306
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=85.27 E-value=0.44 Score=52.55 Aligned_cols=51 Identities=20% Similarity=0.427 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCC-cccch-HHHHHHHHHhCCCCCcEEEEeeC
Q 003415 191 EILSMVKSLASPPHRILVFLQQSS-VEWCS-SLWLDAIREIDPTFRRTVIVVSK 242 (822)
Q Consensus 191 ~v~~LV~~Yik~~~sIILaVv~A~-~D~~n-q~il~lar~~Dp~g~RTIgViTK 242 (822)
+--.+.+..+.+|. |+|+=.|.+ -|..+ ..++++.+++......||.++|.
T Consensus 170 QRVaIArAL~~~P~-lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTH 222 (366)
T 3tui_C 170 QRVAIARALASNPK-VLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH 222 (366)
T ss_dssp HHHHHHHHTTTCCS-EEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred HHHHHHHHHhcCCC-EEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 33456677778887 776666533 35444 44777777774444679999997
No 307
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=85.25 E-value=0.4 Score=47.15 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.8
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-|+++|..+|||||+.+.|.+..++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~lg~~ 28 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDLGVP 28 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCc
Confidence 5899999999999999999985444
No 308
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=85.03 E-value=0.47 Score=47.00 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+||||||+..|+|.-.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4689999999999999999995444
No 309
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=85.03 E-value=0.35 Score=51.96 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=23.5
Q ss_pred CCCCE-EEEEcCCCCchhhHHHHHhCCccc
Q 003415 57 LPIPE-IVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 57 i~lPq-IVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
+.-++ |.|+|.++||||||++.|.|.--|
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45554 569999999999999999997433
No 310
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=84.63 E-value=0.51 Score=44.12 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=18.8
Q ss_pred CEEEEEcCCCCchhhHHHHH
Q 003415 60 PEIVALGGQSDGKSSLLEAL 79 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL 79 (822)
+-|+++|..+|||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 311
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=84.63 E-value=0.48 Score=52.46 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||..|+|.--|
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCC
Confidence 4689999999999999999999766
No 312
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=84.60 E-value=0.39 Score=47.30 Aligned_cols=24 Identities=33% Similarity=0.191 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
.-|+++|..+||||||..+|.+.-
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999863
No 313
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=84.60 E-value=0.46 Score=46.67 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..|-|+|+|.++||||+|++.|.+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999999999874
No 314
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=84.51 E-value=0.53 Score=47.05 Aligned_cols=24 Identities=38% Similarity=0.510 Sum_probs=20.8
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHh
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALL 80 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~ 80 (822)
++.+-.+|+|+.++||||+|+||.
T Consensus 21 f~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 21 FKEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred eCCCeEEEEcCCCCCHHHHHHHHH
Confidence 444578999999999999999986
No 315
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=84.45 E-value=0.93 Score=43.55 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 39 RFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 39 Lld~id~Lr~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.-.+++.++.....+.. -.-.-++++|+.++|||+|+.+|.+.-.|
T Consensus 19 ~~~~~~~~~~~~~~~~~-~~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP-EEGKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp HHHHHHHHHHHHHSCCG-GGCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc-cCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34455555555432210 11235899999999999999999987543
No 316
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=84.31 E-value=0.27 Score=53.91 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-|+|+|..+|||||+|.+|+|.--|
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccC
Confidence 5899999999999999999997433
No 317
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=84.17 E-value=0.42 Score=47.53 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.|+++|..++||||++..|+|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 3789999999999999999986
No 318
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=83.99 E-value=0.35 Score=52.95 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||+.|+|.--|
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4679999999999999999999666
No 319
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=83.61 E-value=1.4 Score=46.34 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-|+++|.++|||||+..+|..
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999974
No 320
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=83.52 E-value=0.48 Score=54.42 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.9
Q ss_pred EEEEcCCCCchhhHHHHHhCCc
Q 003415 62 IVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 62 IVVVG~QSsGKSSlLEAL~G~~ 83 (822)
|+|+|..+|||||+|++|+|.-
T Consensus 263 i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 263 AIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp EEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999974
No 321
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=83.40 E-value=0.45 Score=51.77 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++|||..|||||||++.|+|.--|
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999998444
No 322
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=83.16 E-value=0.48 Score=48.36 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|.++|..+||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999884
No 323
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=83.15 E-value=0.57 Score=46.15 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=23.0
Q ss_pred CCCCCC-EEEEEcCCCCchhhHHHHHhCC
Q 003415 55 EKLPIP-EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 55 ~~i~lP-qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..+.-+ -|+|+|..+||||||.+.|.+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344555 4679999999999999999986
No 324
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=82.99 E-value=0.51 Score=46.35 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCchhhHHHHHhCC
Q 003415 60 PEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.-|+++|..+||||||.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999753
No 325
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=82.91 E-value=0.56 Score=46.62 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCchhhHHHHHhCC
Q 003415 60 PEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..|+++|..+||||||.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999863
No 326
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=82.81 E-value=0.48 Score=46.45 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
.|+|+|..+||||||.+.|.+..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~g~ 26 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRELGA 26 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHTTC
T ss_pred EEEEECCCCcCHHHHHHHHHHCCC
Confidence 589999999999999999998433
No 327
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=82.65 E-value=0.57 Score=52.03 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=21.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
-++++|..+|||||||..|+|+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57899999999999999999974
No 328
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=82.50 E-value=0.5 Score=47.84 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+|+|..+|||||+++.|.|.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999997
No 329
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=82.38 E-value=0.65 Score=44.06 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-|+++|.++|||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 488999999999999999986
No 330
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=82.26 E-value=0.47 Score=53.13 Aligned_cols=25 Identities=32% Similarity=0.189 Sum_probs=21.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-|+|+|..+|||||+|.+|+|.--|
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCC
Confidence 4789999999999999999997433
No 331
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=82.20 E-value=0.47 Score=50.81 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
.+|-++|+|..+|||||+|+.|.|..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 36889999999999999999999975
No 332
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=82.06 E-value=0.53 Score=46.52 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+|+|..+|||||+++.|.+.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999975
No 333
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=81.89 E-value=0.52 Score=50.16 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|.++|.++||||||+..|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999996
No 334
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=81.71 E-value=0.71 Score=44.00 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-|+++|..+|||||+..+|..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 335
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=81.70 E-value=0.7 Score=44.78 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-|+++|..+|||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999986
No 336
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=81.51 E-value=0.72 Score=44.17 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-|+|+|..+|||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 337
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=81.34 E-value=0.59 Score=51.33 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
-|+|+|..+|||||+|.+|+|.--
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 478999999999999999999743
No 338
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=81.16 E-value=0.8 Score=43.95 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhhHHHHHh
Q 003415 61 EIVALGGQSDGKSSLLEALL 80 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~ 80 (822)
-|+++|..+|||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 339
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=80.91 E-value=0.73 Score=44.14 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-|+|+|..+|||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 340
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=80.81 E-value=0.67 Score=45.56 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
.-|+++|..+|||||+..+|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999984
No 341
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=80.53 E-value=0.85 Score=43.76 Aligned_cols=27 Identities=30% Similarity=0.586 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCchhhHHHHHh---CCccc
Q 003415 59 IPEIVALGGQSDGKSSLLEALL---GFRFN 85 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~---G~~fp 85 (822)
.+-|+++|..+|||||+..+|. |.++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~ 40 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYI 40 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEE
Confidence 4569999999999999999998 65553
No 342
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=80.42 E-value=0.62 Score=52.80 Aligned_cols=28 Identities=32% Similarity=0.604 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.=+.++|+|..+||||||+..|+|.--|
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p 164 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALK 164 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccc
Confidence 4468999999999999999999998655
No 343
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=79.96 E-value=0.73 Score=46.16 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-++++|+.+||||||+..|++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999999943
No 344
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=79.71 E-value=0.84 Score=43.90 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-|+++|..+|||||+.+.|..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 345
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=79.66 E-value=0.95 Score=48.73 Aligned_cols=24 Identities=38% Similarity=0.510 Sum_probs=20.3
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHh
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALL 80 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~ 80 (822)
++..-.+++|+.++|||++||||.
T Consensus 21 f~~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 21 FKEGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHH
Confidence 344467899999999999999985
No 346
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=79.61 E-value=0.97 Score=52.14 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+++||..+|||||||..|+|.--|
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999998655
No 347
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=79.42 E-value=0.97 Score=48.25 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
++..-.+++|+.+||||+||+||...
T Consensus 22 ~~~g~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 22 FSDRVTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp CCSSEEEEECCTTTCSTHHHHHHHHT
T ss_pred cCCCcEEEECCCCCcHHHHHHHHHHH
Confidence 34457899999999999999999854
No 348
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=79.41 E-value=0.93 Score=44.12 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+++|..+|||||+.+.|...
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 349
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=79.21 E-value=0.96 Score=52.52 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+++||+.+||||||++.|+|.--|
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999998655
No 350
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=79.11 E-value=0.96 Score=44.08 Aligned_cols=22 Identities=32% Similarity=0.160 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
.-|+|+|..+|||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 351
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=79.10 E-value=0.88 Score=52.98 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+++||+.+||||||++.|+|.--|
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~~p 396 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLYDP 396 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCC
Confidence 5789999999999999999998655
No 352
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=79.08 E-value=0.9 Score=52.72 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+++||+.+||||||++.|+|.--|
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~p 395 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYDI 395 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhhccCC
Confidence 5789999999999999999998655
No 353
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=78.92 E-value=1.6 Score=44.29 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+++|..++|||+|+.+|.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999975
No 354
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=78.70 E-value=0.55 Score=46.15 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+|+|..+|||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 355
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=78.50 E-value=0.89 Score=43.64 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+++|..+|||||+...|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 356
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=78.48 E-value=1 Score=49.16 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=20.9
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHh
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALL 80 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~ 80 (822)
++..-.|++|+.++|||++||||.
T Consensus 23 f~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 23 FEKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHH
Confidence 444678999999999999999986
No 357
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=78.43 E-value=0.98 Score=52.69 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=23.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+++||+.+||||||++.|+|.--|
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCcCC
Confidence 6889999999999999999998666
No 358
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=78.26 E-value=1.2 Score=42.75 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCchhhHHHHHh
Q 003415 59 IPEIVALGGQSDGKSSLLEALL 80 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~ 80 (822)
.+-|+++|..+|||||+...|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999996
No 359
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=78.15 E-value=0.85 Score=50.68 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=22.6
Q ss_pred CEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.-++|+|+.++|||+||+||.+.-.+
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 36799999999999999999987544
No 360
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=78.02 E-value=1.2 Score=51.44 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++|+|..+|||||||++|+|.--|
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~p 338 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEEP 338 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998655
No 361
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=77.99 E-value=1.1 Score=43.23 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.2
Q ss_pred EEEEcCCCCchhhHHHHHhCC
Q 003415 62 IVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 62 IVVVG~QSsGKSSlLEAL~G~ 82 (822)
|++.|..+|||||+.+.|...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999753
No 362
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=77.87 E-value=1 Score=49.42 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCc
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
++..-.+++|+.++||||+||||.+.-
T Consensus 24 ~~~g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 24 FPEGVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EcCCeEEEECCCCCChhHHHHHHHHhc
Confidence 444568999999999999999999753
No 363
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=77.86 E-value=0.39 Score=52.67 Aligned_cols=27 Identities=26% Similarity=0.108 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCCc
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
+.-.-+++||..+|||||||++|.+.-
T Consensus 58 ~~~G~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 58 LGGGFCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp CCSSEEEEEESHHHHHHHHTHHHHHHT
T ss_pred cCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 444589999999999999999998764
No 364
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=77.85 E-value=1.7 Score=44.63 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=30.6
Q ss_pred ccCcchhhhHHHHHHHHHHHHHhcCCCCCCC-EEEEEcCCCCchhhHHHHHhCC
Q 003415 30 TDSASTRASRFEAYNRLQAAAVAFGEKLPIP-EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 30 ~l~s~~~~~Lld~id~Lr~~g~~~~~~i~lP-qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.|...+-..+++.|-+ .+-.+ .....-| -|+++|.++|||||+...|.+.
T Consensus 5 ~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 5 DYTDSEFKHALARNLR--SLTRG-KKSSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CCCHHHHHHHHHHHHH--HHHTT-CCCCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH--HHHcc-CCcccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3444455555555522 22111 1234444 5789999999999999999763
No 365
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=77.84 E-value=1.2 Score=51.46 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||++|+|.--|
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998666
No 366
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=77.83 E-value=0.9 Score=49.09 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|.|+|.++||||||+..|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999886
No 367
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=77.80 E-value=1.2 Score=43.08 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCC
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-+-|+++|..+|||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346999999999999999999754
No 368
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=77.39 E-value=1.2 Score=52.16 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++++|..+|||||||..|+|.--|
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~p 143 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLIP 143 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCChHHHHHHHHhCCCCC
Confidence 4789999999999999999998666
No 369
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=77.39 E-value=1.2 Score=52.16 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=23.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||..|+|.--|
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCChHHHHHHHHhcCCCC
Confidence 5789999999999999999998766
No 370
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=77.37 E-value=1.1 Score=43.94 Aligned_cols=21 Identities=33% Similarity=0.305 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-|+++|..+|||||+.+.|..
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
No 371
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=77.27 E-value=0.37 Score=49.53 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.2
Q ss_pred EEEcCCCCchhhHHHHHhCCccc
Q 003415 63 VALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 63 VVVG~QSsGKSSlLEAL~G~~fp 85 (822)
+|+|+.+|||||||.+|+|.-.|
T Consensus 31 ~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHhccccc
Confidence 67899999999999999998776
No 372
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=77.22 E-value=1.3 Score=51.27 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-+.+||..+|||||||..|+|.--|
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4789999999999999999998666
No 373
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=77.21 E-value=0.97 Score=47.95 Aligned_cols=24 Identities=25% Similarity=0.079 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCC
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..-|.|+|.++||||||.+.|.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999886
No 374
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=77.16 E-value=1 Score=43.50 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCchhhHHHHHhCC
Q 003415 60 PEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.-|+++|..+|||||+...|.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 375
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=77.09 E-value=0.88 Score=51.92 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||.+|+|.--|
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred eEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4789999999999999999998655
No 376
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=76.88 E-value=1.3 Score=51.88 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..+|||||||.+|+|.--|
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p 408 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEP 408 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999998655
No 377
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=76.77 E-value=1.3 Score=42.42 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
+.|+++|..+|||||+.++|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3599999999999999999964
No 378
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=76.72 E-value=1.2 Score=43.70 Aligned_cols=22 Identities=32% Similarity=0.244 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
.-|+|+|..+|||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 379
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=76.62 E-value=1.3 Score=42.52 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-|+++|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999975
No 380
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=76.59 E-value=0.93 Score=52.61 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.8
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+++||+.+||||||++.|+|.--|
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred EEEEECCCCChHHHHHHHHhcCCCC
Confidence 5789999999999999999998655
No 381
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=76.59 E-value=1.3 Score=45.76 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+++|..++|||+|+.+|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999985
No 382
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=76.55 E-value=1.1 Score=52.26 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+++||+.+||||||++.|+|.--|
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~~ 395 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLIDP 395 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCccC
Confidence 6889999999999999999998655
No 383
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=76.54 E-value=2.9 Score=41.09 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..+-|+++|..++|||+++.+|...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999864
No 384
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=76.19 E-value=1.7 Score=46.50 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=30.4
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 35 TRASRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 35 ~~~~Lld~id~Lr~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
++..+++.++..-..+..-+. .++-++++|+.++|||||+.+|+|.
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~--~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGE--VLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTC--CCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCC--CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 344555555543333321122 3456899999999999999999985
No 385
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=75.92 E-value=1.3 Score=42.61 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
|.|+++|..+|||||+-..|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998853
No 386
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=75.92 E-value=1.3 Score=43.61 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
.|+|+|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999953
No 387
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=75.72 E-value=1.2 Score=43.88 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=21.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..++|||+|+..|++.-.+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999976443
No 388
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=75.68 E-value=1.2 Score=44.09 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+|+|..+|||||+.+.|.+.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHc
Confidence 6899999999999999999863
No 389
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=75.61 E-value=1.4 Score=41.57 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
+-|+++|..+|||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999864
No 390
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=75.58 E-value=1.4 Score=42.33 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCchhhHHHHHhC
Q 003415 59 IPEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G 81 (822)
.+-|+++|..+|||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999963
No 391
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=75.23 E-value=1.4 Score=43.48 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchhhHHHHHhC-Cccc
Q 003415 61 EIVALGGQSDGKSSLLEALLG-FRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G-~~fp 85 (822)
.|+++|..+|||||+.+.|.. ..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIP 27 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 489999999999999999953 3344
No 392
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=75.04 E-value=1.5 Score=42.02 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-|+++|..+|||||+.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 393
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=75.00 E-value=1.5 Score=41.24 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
.|+++|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 394
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=74.27 E-value=4.2 Score=39.52 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 41 EAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 41 d~id~Lr~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.+++.++............+-|+++|..++|||+++.+|...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344455544432222222267999999999999999999864
No 395
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=74.21 E-value=1.3 Score=42.35 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=15.5
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
.-|+++|..+|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999963
No 396
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=74.16 E-value=1.5 Score=41.88 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
+-|+++|..+|||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 397
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=74.11 E-value=1.8 Score=40.99 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=19.7
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G 81 (822)
..--|+++|..+|||||+-+.|..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999854
No 398
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=74.08 E-value=10 Score=46.75 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.1
Q ss_pred EEEEEcCCCCchhhHHHHH--------hCCcccc
Q 003415 61 EIVALGGQSDGKSSLLEAL--------LGFRFNV 86 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL--------~G~~fp~ 86 (822)
-++++|..++||||+|..| +|..+|.
T Consensus 664 i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa 697 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC 697 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc
Confidence 4889999999999999999 6766663
No 399
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=73.82 E-value=3.9 Score=39.27 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..|-++++|..++|||+++++|...
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3445999999999999999999753
No 400
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=73.72 E-value=1.8 Score=50.79 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.7
Q ss_pred EEEEcCCCCchhhHHHHHhCCcccc
Q 003415 62 IVALGGQSDGKSSLLEALLGFRFNV 86 (822)
Q Consensus 62 IVVVG~QSsGKSSlLEAL~G~~fp~ 86 (822)
++++|..+|||||||++|+|.--|.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p~ 405 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKPD 405 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC
Confidence 6899999999999999999997663
No 401
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=73.46 E-value=1.4 Score=46.05 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=20.2
Q ss_pred EEEEcCCCCchhhHHHHHhCC
Q 003415 62 IVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 62 IVVVG~QSsGKSSlLEAL~G~ 82 (822)
|+++|..++|||+|+.+|+|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999985
No 402
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=73.35 E-value=1.7 Score=42.33 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
|-|++.|..+||||||.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999965
No 403
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=72.93 E-value=1.4 Score=46.07 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=22.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++|+|..++|||+|+..|+|.--|
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999997544
No 404
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=72.91 E-value=2 Score=40.24 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCC
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.+-|+++|..++|||+++.+|...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999764
No 405
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=72.76 E-value=1.9 Score=41.64 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
+-|+++|..+|||||+...|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 406
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=72.73 E-value=1.8 Score=42.20 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCchhhHHHHHh
Q 003415 60 PEIVALGGQSDGKSSLLEALL 80 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~ 80 (822)
.-|+|+|..+|||||+.+.|.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999997
No 407
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=72.59 E-value=1.7 Score=42.08 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCchhhHHHHHhCC
Q 003415 60 PEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.-|+++|..+|||||+.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 36899999999999999999865
No 408
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=72.54 E-value=1.8 Score=42.26 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-|+++|..+|||||+.+.|..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999964
No 409
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=72.52 E-value=4.4 Score=42.61 Aligned_cols=53 Identities=11% Similarity=-0.002 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCCccc
Q 003415 191 EILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRL 247 (822)
Q Consensus 191 ~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~ 247 (822)
.....+..++++.+ +|+.|++|........ ..+.+.+ .+.+.|.|+||.|+..
T Consensus 12 ka~~~~~~~l~~aD-vVl~VvDAr~p~~~~~-~~l~~~l--~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 12 KARREVTEKLKLID-IVYELVDARIPMSSRN-PMIEDIL--KNKPRIMLLNKADKAD 64 (282)
T ss_dssp HHHHHHHHHGGGCS-EEEEEEETTSTTTTSC-HHHHHHC--SSSCEEEEEECGGGSC
T ss_pred HHHHHHHHHHhhCC-EEEEEEeCCCCCccCC-HHHHHHH--CCCCEEEEEECcccCC
Confidence 34566788888888 7778888876655431 1122222 4688999999999964
No 410
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=72.08 E-value=1.6 Score=45.31 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCchhhHHHHHhC
Q 003415 59 IPEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G 81 (822)
-..|+++|..+|||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999965
No 411
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=71.94 E-value=1.7 Score=43.12 Aligned_cols=23 Identities=30% Similarity=0.177 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCchhhHHHHHhCC
Q 003415 60 PEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.-|+++|..+|||||+...|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999875
No 412
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=71.93 E-value=1.8 Score=43.38 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCchhhHHHHHh
Q 003415 60 PEIVALGGQSDGKSSLLEALL 80 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~ 80 (822)
.-|+++|..+|||||+.+.|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999997
No 413
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=71.72 E-value=1.8 Score=43.06 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
.-|+|+|..+|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999974
No 414
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=71.41 E-value=2.1 Score=43.27 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCchhhHHHHHhC
Q 003415 59 IPEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G 81 (822)
...|+++|..+|||||+.+.|.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999985
No 415
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=70.82 E-value=2.2 Score=43.88 Aligned_cols=23 Identities=30% Similarity=0.275 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCchhhHHHHHhC
Q 003415 59 IPEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G 81 (822)
.+-|+++|-.+|||||+...|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35699999999999999999974
No 416
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.67 E-value=1.7 Score=46.18 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..|.++++|+.++||||++.+|.|.
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4566999999999999999999984
No 417
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=70.12 E-value=1.8 Score=47.73 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.1
Q ss_pred CCCC-EEEEEcCCCCchhhHHHHHhCC
Q 003415 57 LPIP-EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 57 i~lP-qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
++.+ -|+++|..++|||||+.+|.|.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4444 6789999999999999999984
No 418
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=70.10 E-value=1.6 Score=53.86 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.9
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.++|+|..+|||||||+.|+|.--|
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll~P 725 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGELLP 725 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998666
No 419
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=69.85 E-value=2.1 Score=42.36 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
.|+|+|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 420
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=69.64 E-value=5.3 Score=42.56 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
..|-++|+|..++|||+++.+|.+.-
T Consensus 43 ~~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 43 HYPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999753
No 421
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=69.21 E-value=3.8 Score=45.83 Aligned_cols=49 Identities=10% Similarity=0.178 Sum_probs=32.1
Q ss_pred ccccccccCcchhhhHHHHH-HHHHHHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 24 HHQLSATDSASTRASRFEAY-NRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 24 ~~~~~~~l~s~~~~~Lld~i-d~Lr~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
++++...|+. +|+..++.+ +.|.. +. +-++|.|..++|||+|+.++...
T Consensus 19 ~p~~~~~Ln~-~Q~~av~~~~~~i~~-----~~----~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 19 SHMTFDDLTE-GQKNAFNIVMKAIKE-----KK----HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp --CCSSCCCH-HHHHHHHHHHHHHHS-----SS----CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCccccCCH-HHHHHHHHHHHHHhc-----CC----CEEEEEeCCCCCHHHHHHHHHHH
Confidence 5666667754 566555544 33332 11 37899999999999999988753
No 422
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=69.09 E-value=2.1 Score=42.68 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-++++|+.++|||+|+..|++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999984
No 423
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=68.99 E-value=2.1 Score=41.89 Aligned_cols=21 Identities=19% Similarity=0.044 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-++++|..++|||+++..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999998
No 424
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=68.98 E-value=2.4 Score=42.51 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-|+|+|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999964
No 425
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=68.95 E-value=2.4 Score=43.59 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.9
Q ss_pred EEEEEcCCCCchhhHHHHHh---CCccc
Q 003415 61 EIVALGGQSDGKSSLLEALL---GFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~---G~~fp 85 (822)
.|+++|..+|||||+.+.|. |+.+.
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 69999999999999999998 65554
No 426
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=68.81 E-value=2.4 Score=42.03 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
.-|+++|..+|||||+...|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 427
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=68.77 E-value=2.1 Score=44.13 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-|+|+|..+||||||-.+|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999975
No 428
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=68.55 E-value=2.4 Score=43.08 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+++|..++|||+++.+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999999874
No 429
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=67.81 E-value=2.5 Score=54.01 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.3
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNV 86 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~ 86 (822)
.|.+||+.+||||||+.+|.|+-=|.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~~p~ 1132 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFYDTL 1132 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSSCCS
T ss_pred EEEEECCCCChHHHHHHHHhcCccCC
Confidence 58999999999999999999986553
No 430
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=66.51 E-value=2.9 Score=42.49 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|++.|..+|||||+++.|...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 431
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=66.27 E-value=5.8 Score=38.35 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCchhhHHHHHhCC
Q 003415 60 PEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
+-++|+|..++|||+++.+|...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 432
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=65.85 E-value=2.8 Score=39.31 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCC
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.+-|+++|..++|||+++.+|...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998764
No 433
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=65.84 E-value=2.7 Score=53.58 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFNV 86 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp~ 86 (822)
.++|||..+||||||+..|+|+-=|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~~~ 471 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYDVL 471 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSCCS
T ss_pred EEEEEecCCCcHHHHHHHhccccccc
Confidence 68899999999999999999986553
No 434
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=65.52 E-value=3 Score=43.37 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-|+++|.++|||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999985
No 435
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=65.49 E-value=3 Score=42.47 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCchhhHHHHHhC
Q 003415 59 IPEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G 81 (822)
...|+++|..+|||||+...|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999974
No 436
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=65.39 E-value=2.9 Score=41.56 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
..|+++|..+|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999953
No 437
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=64.80 E-value=3.2 Score=41.71 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
.-|+++|..+|||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 438
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=64.38 E-value=3.3 Score=42.21 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCchhhHHHHHhC-Cccc
Q 003415 60 PEIVALGGQSDGKSSLLEALLG-FRFN 85 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G-~~fp 85 (822)
.-|+|.|.++||||||-+.|.. ..++
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 3689999999999999998865 3443
No 439
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=64.19 E-value=4 Score=44.13 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
|-|||+|..+||||+|...|..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 5689999999999999999974
No 440
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=64.04 E-value=2.1 Score=49.62 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-|+++|..+||||||+.+|.|.--|
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHHhhcc
Confidence 4789999999999999999997443
No 441
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=63.84 E-value=3.1 Score=43.84 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..|.+++.|..++|||+++.+|.+.
T Consensus 57 ~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 57 NLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999976
No 442
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=63.62 E-value=6.8 Score=45.06 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHhCCc
Q 003415 37 ASRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFR 83 (822)
Q Consensus 37 ~~Lld~id~Lr~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~~ 83 (822)
..+...|.+...+. .+...+..+-++++|+.++|||+++.+|.+.-
T Consensus 87 ~~vk~~i~~~~~l~-~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 87 EKVKERILEYLAVQ-KLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHHHHHHHHHHHHH-HHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 44444444333322 23455677889999999999999999998763
No 443
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=63.39 E-value=3.6 Score=40.73 Aligned_cols=25 Identities=28% Similarity=0.155 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.-.-|.++|..+||||||-+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999998743
No 444
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=63.36 E-value=2.7 Score=47.18 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+.++|+.++|||+||..|+|..-|
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 5689999999999999999998644
No 445
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=63.04 E-value=3.3 Score=43.31 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-|+|+|..+|||||+.+.|..
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 446
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=62.65 E-value=8.8 Score=40.78 Aligned_cols=46 Identities=11% Similarity=0.082 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 35 TRASRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 35 ~~~~Lld~id~Lr~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
++......+..|...-. .......-++++|+.++|||++..+|...
T Consensus 48 G~~~~~~~l~~l~~~~~--~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 48 GQLAARRAAGVVLEMIR--EGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp SCHHHHHHHHHHHHHHH--TTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 44555566655655443 23333458999999999999999999853
No 447
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=62.31 E-value=3.1 Score=43.10 Aligned_cols=21 Identities=24% Similarity=0.096 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-++|+|..++|||+|+..|++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999997
No 448
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=61.94 E-value=3.5 Score=52.46 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=22.8
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+++||..+||||||+..|.|.-=|
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~~~ 442 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLYDP 442 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5899999999999999999998655
No 449
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=61.83 E-value=3.1 Score=45.27 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+.++|+.++|||+||..|+|..-|
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999998544
No 450
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=61.29 E-value=6.6 Score=41.31 Aligned_cols=38 Identities=24% Similarity=0.200 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 43 YNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 43 id~Lr~~g~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
+..++.... ...-..+-++++|+.++|||+++.+|.+.
T Consensus 23 ~~~~~~~~~--~~~~~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 23 YEVVKEALE--NLGSLYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp HHHHHHHHH--TTTTSCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHh--CcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 344555443 21113457999999999999999999865
No 451
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=61.25 E-value=6.6 Score=41.00 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCchhhHHHHHhCC
Q 003415 60 PEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
|-++|.|..++|||+|+..+...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 78999999999999999998753
No 452
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=61.25 E-value=8.1 Score=47.47 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
-++++|..++||||+|..|.++-++
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i~~~ 699 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALITIM 699 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHHHHH
Confidence 4899999999999999999866544
No 453
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=59.99 E-value=8.8 Score=35.53 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=19.4
Q ss_pred EEEEcCCCCchhhHHHHHhCC
Q 003415 62 IVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 62 IVVVG~QSsGKSSlLEAL~G~ 82 (822)
|++.|+.++|||++..+|...
T Consensus 27 vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999764
No 454
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=59.32 E-value=6.5 Score=42.38 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCchhhHHHHHhC
Q 003415 59 IPEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G 81 (822)
.+-|||+|..+||||+|...|..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 34678899999999999999974
No 455
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=59.24 E-value=4.5 Score=51.46 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=23.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCCccc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.+.+||..+||||||++.|.|.-=|
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~~p 1085 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFYDP 1085 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCC
Confidence 5889999999999999999998655
No 456
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=58.97 E-value=8.9 Score=40.34 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..+-|+++|..++|||++..+|...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4567999999999999999999653
No 457
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=58.69 E-value=7.4 Score=39.53 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=29.5
Q ss_pred chhhhHHHHHHHHHHHH--HhcCCCCCCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 34 STRASRFEAYNRLQAAA--VAFGEKLPIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 34 ~~~~~Lld~id~Lr~~g--~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.....|.+.+..+..-. ..++...+. -|+++|..++|||++..+|.+.
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 18 EAKEEVVEIVDFLKYPERYANLGAKIPK-GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTHHHHHHHHHHHHCHHHHHHHSCCCCS-CCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHChHHHHHCCCCCCc-eEEEECCCCCcHHHHHHHHHHH
Confidence 34455666555433111 111223232 3889999999999999999863
No 458
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=58.37 E-value=3.9 Score=43.14 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=17.3
Q ss_pred CCEEEEEcCCCCchhhHHHHHhC
Q 003415 59 IPEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G 81 (822)
.+-|+|.|..+||||||.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999875
No 459
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=58.16 E-value=3.6 Score=42.19 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCC
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..-|+|.|..+|||||+.+.|...
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999998753
No 460
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=58.12 E-value=4.6 Score=44.74 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
.-|+++|.++|||||+...|..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588899999999999999975
No 461
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=57.83 E-value=4.7 Score=40.62 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-|+|.|..+|||||+++.|..
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999985
No 462
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=57.59 E-value=9.1 Score=43.47 Aligned_cols=47 Identities=23% Similarity=0.317 Sum_probs=29.7
Q ss_pred hhhhHHHHHHHHHHHH--HhcCCCCCCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 35 TRASRFEAYNRLQAAA--VAFGEKLPIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 35 ~~~~Lld~id~Lr~~g--~~~~~~i~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.-.+|.+.+..+.... ..++..++- -|+++|.+++|||+++.+|.+.
T Consensus 24 ~~~~l~e~v~~l~~~~~~~~~g~~~p~-gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 24 AIEELKEVVEFLKDPSKFNRIGARMPK-GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp HHHHHHHHHHHHHCTHHHHTTTCCCCS-EEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhChHHHhhcCCCCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 3345555555543211 112223333 4899999999999999999873
No 463
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=57.54 E-value=4.1 Score=50.37 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.++++|..+|||||||..|+|-
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999953
No 464
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=57.31 E-value=4.5 Score=46.41 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G 81 (822)
..|.++|+|..+||||++|++|..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999999875
No 465
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=57.04 E-value=4.9 Score=44.10 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..|.|+++|..++||||+..+|++.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4678999999999999999998874
No 466
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=56.12 E-value=7.4 Score=38.06 Aligned_cols=60 Identities=12% Similarity=-0.047 Sum_probs=34.2
Q ss_pred CCCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccchHHHHHHHHHhCCCCCcEEEEeeCCC
Q 003415 165 CPNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 165 ~~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~nq~il~lar~~Dp~g~RTIgViTK~D 244 (822)
.+++.||||||....+. |..-....+++|+++....... ...+... +...+.|+||.|
T Consensus 108 ~~d~iiidt~G~~~~~~-----------------~~~~~~~~~i~vvd~~~~~~~~--~~~~~~~---~~~~iiv~NK~D 165 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV-----------------DFDLGENYRVVMVSVTEGDDVV--EKHPEIF---RVADLIVINKVA 165 (221)
T ss_dssp TCSEEEEEEEEBSSGGG-----------------GCCCSCSEEEEEEEGGGCTTHH--HHCHHHH---HTCSEEEEECGG
T ss_pred CCCEEEEeCCCCCCCCc-----------------hhccccCcEEEEEeCCCcchhh--hhhhhhh---hcCCEEEEeccc
Confidence 37899999999522211 1111223567777776432221 1222222 356899999999
Q ss_pred cc
Q 003415 245 NR 246 (822)
Q Consensus 245 ~~ 246 (822)
+.
T Consensus 166 l~ 167 (221)
T 2wsm_A 166 LA 167 (221)
T ss_dssp GH
T ss_pred CC
Confidence 84
No 467
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=56.00 E-value=5.3 Score=44.91 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.|++||.++|||||+...|...
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999854
No 468
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=55.94 E-value=3.8 Score=48.29 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=17.8
Q ss_pred EEEEEcCCCCchhhHHHHHh
Q 003415 61 EIVALGGQSDGKSSLLEALL 80 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~ 80 (822)
-++|+|..+|||||||++|+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 47899999999999998775
No 469
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=55.23 E-value=11 Score=38.36 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC---EEEEEcCCCCchhhHHHHHhCC
Q 003415 39 RFEAYNRLQAAAVAFGEKLPIP---EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 39 Lld~id~Lr~~g~~~~~~i~lP---qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
....+..|+..-- .+| -|++.|+.++|||++..||...
T Consensus 41 ~~~f~~~l~~~~~------~iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 41 FITFLGALKSFLK------GTPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHHHH------TCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh------cCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 4445666666543 377 7999999999999888887653
No 470
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=55.18 E-value=4.7 Score=42.66 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCC
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..-++|+|..++|||+++.+|.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999875
No 471
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=54.88 E-value=3.2 Score=47.30 Aligned_cols=26 Identities=27% Similarity=0.141 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 57 LPIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 57 i~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
+.-.-.|++|..++|||+||+||...
T Consensus 58 f~~g~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 58 LGGGFCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp CCCSEEEEEESHHHHHHHHTHHHHHH
T ss_pred cCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 44457899999999999999999654
No 472
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=54.50 E-value=6.3 Score=38.72 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-|+++|..+||||++...|..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 473
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=54.14 E-value=5.5 Score=41.19 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCC
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..-|+++|++++|||+++.+|.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999863
No 474
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=53.71 E-value=6.6 Score=39.49 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-|++.|..+|||||+++.|..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 475
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.63 E-value=14 Score=37.94 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..|.+++.|+.++|||+++.+|...
T Consensus 41 ~~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 41 NMPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3455999999999999999999854
No 476
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=53.53 E-value=9.2 Score=41.59 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCchhhHHHHHhCC
Q 003415 60 PEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
+-|||+|..+||||+|--.|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999863
No 477
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=53.46 E-value=10 Score=40.05 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..+-++++|..++|||+++.++...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4557999999999999999999864
No 478
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=53.26 E-value=6.6 Score=40.20 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCC
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..-|+++|+.++|||+++.+|...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 446999999999999999999753
No 479
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=52.74 E-value=6.9 Score=39.31 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
+-|+++|.+++|||++..+|..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999976
No 480
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=52.67 E-value=7.5 Score=40.51 Aligned_cols=22 Identities=50% Similarity=0.617 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
+-++|.|..++|||||+..+..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHH
Confidence 6899999999999999999874
No 481
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=52.23 E-value=6.9 Score=42.58 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCchhhHHHHHhC
Q 003415 60 PEIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G 81 (822)
+-|+|+|..+||||+|-..|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3689999999999999999875
No 482
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=52.16 E-value=18 Score=37.35 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCCcc
Q 003415 61 EIVALGGQSDGKSSLLEALLGFRF 84 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~~f 84 (822)
-++++|+.++|||++..+|.+.-.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHHc
Confidence 589999999999999999998643
No 483
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=52.11 E-value=5.8 Score=43.19 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCCccc
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGFRFN 85 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~~fp 85 (822)
.-|-++|+|..++|||+++..|++.-.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~ 61 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM 61 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999976543
No 484
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=51.71 E-value=14 Score=38.02 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..|.+++.|..++|||++..+|...
T Consensus 45 ~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 45 SMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4567999999999999999999864
No 485
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=51.65 E-value=7.2 Score=44.55 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+++|..++|||+|+.+|.|.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999975
No 486
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=51.42 E-value=7 Score=38.73 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=17.4
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
-++|+|+.++|||+++..|+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999766653
No 487
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=51.29 E-value=6 Score=46.56 Aligned_cols=16 Identities=44% Similarity=0.449 Sum_probs=14.9
Q ss_pred EEEEEcCCCCchhhHH
Q 003415 61 EIVALGGQSDGKSSLL 76 (822)
Q Consensus 61 qIVVVG~QSsGKSSlL 76 (822)
-++++|..+|||||||
T Consensus 46 ~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 46 LVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHh
Confidence 4899999999999997
No 488
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=50.97 E-value=6.5 Score=40.13 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=17.2
Q ss_pred CEEEEEcCCCCchhhHHHHHhCC
Q 003415 60 PEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
--|||.|..+|||||+++.|...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
No 489
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=50.68 E-value=14 Score=39.19 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCchhhHHHHHhCC
Q 003415 59 IPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 59 lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.+-|+++|..++|||+++.+|...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999854
No 490
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=50.51 E-value=19 Score=38.46 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=32.8
Q ss_pred HhcCCCCcEEEEEecCC-cccchHHHHHHHHHhCCCCCcEEEEeeCCCcccc
Q 003415 198 SLASPPHRILVFLQQSS-VEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRLK 248 (822)
Q Consensus 198 ~Yik~~~sIILaVv~A~-~D~~nq~il~lar~~Dp~g~RTIgViTK~D~~~~ 248 (822)
.-+++-+ +|+.|+++. .++....+-++...+-..+.+.|.|+||.|+..+
T Consensus 82 ~~~anvD-~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 82 PPICNVD-QAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIED 132 (307)
T ss_dssp TTEECCC-EEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCC
T ss_pred HHHHhCC-EEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCch
Confidence 3467777 666677776 4555444444444333457899999999999644
No 491
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=50.33 E-value=16 Score=36.25 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=39.7
Q ss_pred CCeEEEeCCCCccccCCCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCcccch-HHHHHHHHHhCCCCCcEEEEeeCCC
Q 003415 166 PNLTIIDTPGFVLKAKKGEPENTPDEILSMVKSLASPPHRILVFLQQSSVEWCS-SLWLDAIREIDPTFRRTVIVVSKFD 244 (822)
Q Consensus 166 ~~LtlVDLPGl~~~~~~~q~~~~~~~v~~LV~~Yik~~~sIILaVv~A~~D~~n-q~il~lar~~Dp~g~RTIgViTK~D 244 (822)
.+++|||+|+.... .....+...+.+|+.+.+....+.. ..+++.++++.+...+.-.|+||.|
T Consensus 119 yD~viiD~p~~~~~---------------~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~ 183 (245)
T 3ea0_A 119 YDYIIVDFGASIDH---------------VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRAD 183 (245)
T ss_dssp CSEEEEEEESSCCT---------------THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTT
T ss_pred CCEEEEeCCCCCch---------------HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCC
Confidence 68999999985421 1223345566566665543322222 2345566666655567788999998
Q ss_pred cc
Q 003415 245 NR 246 (822)
Q Consensus 245 ~~ 246 (822)
..
T Consensus 184 ~~ 185 (245)
T 3ea0_A 184 TN 185 (245)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 492
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=50.23 E-value=7.8 Score=40.62 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=20.7
Q ss_pred CCCCCE-EEEEcCCCCchhhHHHHHhC
Q 003415 56 KLPIPE-IVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 56 ~i~lPq-IVVVG~QSsGKSSlLEAL~G 81 (822)
.+..|. |.+.|.+++|||++.++|..
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 355665 45569999999999999984
No 493
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=50.13 E-value=10 Score=39.13 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..+-|+++|+.++|||++..+|...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3446999999999999999988764
No 494
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=50.01 E-value=7.6 Score=39.86 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+|.|..+|||||+++.|...
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 495
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=49.92 E-value=8.2 Score=39.31 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
-|+|.|..+|||||+++.|...
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5888999999999999999753
No 496
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=49.90 E-value=7.8 Score=38.30 Aligned_cols=21 Identities=48% Similarity=0.659 Sum_probs=18.9
Q ss_pred EEEEcCCCCchhhHHHHHhCC
Q 003415 62 IVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 62 IVVVG~QSsGKSSlLEAL~G~ 82 (822)
|.|+|...||||++-|.|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999844
No 497
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=49.73 E-value=8.8 Score=38.85 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCchhhHHHHHhCC
Q 003415 60 PEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 60 PqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
.-|+++|..++|||+|.-+|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999864
No 498
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=48.99 E-value=8.8 Score=38.42 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchhhHHHHHhC
Q 003415 61 EIVALGGQSDGKSSLLEALLG 81 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G 81 (822)
.|+++|.++|||+|.-+.|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999985
No 499
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=48.96 E-value=8.1 Score=38.92 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchhhHHHHHhCC
Q 003415 61 EIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 61 qIVVVG~QSsGKSSlLEAL~G~ 82 (822)
=|++.|..+|||||+++.|...
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
No 500
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=48.94 E-value=19 Score=36.70 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCchhhHHHHHhCC
Q 003415 58 PIPEIVALGGQSDGKSSLLEALLGF 82 (822)
Q Consensus 58 ~lPqIVVVG~QSsGKSSlLEAL~G~ 82 (822)
..+-|+++|..++|||++..+|...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999999999764
Done!