Your job contains 1 sequence.
>003416
MDVSFDEFSKARGENGEGDGNEGGFQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPF
HVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDIGDVEAV
KPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDF
VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK
LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS
MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC
EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK
NSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTM
PHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSSSGQSRDL
NACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRKFDGEKKDKEAMKLEQIKSSVNLPFH
SIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVSQSEEPAPAAR
PDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSALEMGKQDETMSLSDLSTSFQEC
FHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNS
GDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003416
(821 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
MGI|MGI:1355322 - symbol:Exosc10 "exosome component 10" s... 747 1.4e-84 3
UNIPROTKB|E1C525 - symbol:EXOSC10 "Uncharacterized protei... 759 9.5e-84 3
UNIPROTKB|Q01780 - symbol:EXOSC10 "Exosome component 10" ... 736 9.4e-82 3
RGD|2323986 - symbol:LOC100366273 "rCG30986-like" species... 729 9.4e-82 3
UNIPROTKB|D4A1X2 - symbol:LOC100366273 "Protein LOC100366... 729 9.4e-82 3
UNIPROTKB|F1PI20 - symbol:EXOSC10 "Uncharacterized protei... 738 8.5e-77 2
UNIPROTKB|B4DKG8 - symbol:EXOSC10 "Exosome component 10" ... 736 1.8e-76 2
UNIPROTKB|F1RHR9 - symbol:EXOSC10 "Uncharacterized protei... 734 2.9e-76 2
UNIPROTKB|A7E323 - symbol:EXOSC10 "Uncharacterized protei... 731 5.9e-76 2
UNIPROTKB|E1BMZ5 - symbol:EXOSC10 "Uncharacterized protei... 718 1.4e-74 2
ZFIN|ZDB-GENE-040426-781 - symbol:exosc10 "exosome compon... 740 2.8e-73 1
DICTYBASE|DDB_G0271572 - symbol:exosc10 "exosome componen... 687 4.3e-73 4
POMBASE|SPAC1F3.01 - symbol:rrp6 "exosome 3'-5' exoribonu... 592 8.1e-66 3
WB|WBGene00000796 - symbol:crn-3 species:6239 "Caenorhabd... 624 9.9e-64 2
FB|FBgn0038269 - symbol:Rrp6 "Rrp6" species:7227 "Drosoph... 618 3.0e-62 2
UNIPROTKB|Q95Z10 - symbol:RRP6 "Rrp6p homologue" species:... 579 3.3e-56 1
TAIR|locus:504955936 - symbol:AT2G32415 species:3702 "Ara... 581 3.1e-55 1
ASPGD|ASPL0000094155 - symbol:AN11773 species:162425 "Eme... 565 4.3e-52 1
ASPGD|ASPL0000095540 - symbol:AN11774 species:162425 "Eme... 565 4.3e-52 1
SGD|S000005527 - symbol:RRP6 "Nuclear exosome exonuclease... 534 3.6e-50 1
CGD|CAL0000608 - symbol:RRP6 species:5476 "Candida albica... 523 9.1e-49 2
UNIPROTKB|Q59MB4 - symbol:RRP6 "Likely nuclear exosome co... 523 9.1e-49 2
TIGR_CMR|GSU_0443 - symbol:GSU_0443 "ribonuclease D, puta... 244 7.1e-18 1
TIGR_CMR|APH_0137 - symbol:APH_0137 "putative ribonucleas... 200 8.0e-13 1
TIGR_CMR|SPO_2167 - symbol:SPO_2167 "ribonuclease D" spec... 191 8.6e-12 1
UNIPROTKB|Q9KQL4 - symbol:rnd "Ribonuclease D" species:24... 189 1.4e-11 1
TIGR_CMR|VC_1984 - symbol:VC_1984 "ribonuclease D" specie... 189 1.4e-11 1
TIGR_CMR|ECH_0300 - symbol:ECH_0300 "putative ribonucleas... 183 6.7e-11 1
TIGR_CMR|APH_1098 - symbol:APH_1098 "3''-5'' exonuclease ... 152 1.0e-09 1
TIGR_CMR|CPS_3518 - symbol:CPS_3518 "ribonuclease D" spec... 159 2.9e-08 1
TIGR_CMR|NSE_0529 - symbol:NSE_0529 "3'-5' exonuclease fa... 141 2.1e-07 1
UNIPROTKB|P09155 - symbol:rnd "RNase D" species:83333 "Es... 147 6.1e-07 1
UNIPROTKB|O07183 - symbol:MT2755 "CONSERVED HYPOTHETICAL ... 145 1.4e-06 1
TIGR_CMR|SO_2580 - symbol:SO_2580 "ribonuclease D" specie... 136 9.5e-06 1
TIGR_CMR|SPO_0083 - symbol:SPO_0083 "exonuclease, putativ... 121 8.2e-05 1
TIGR_CMR|ECH_1011 - symbol:ECH_1011 "3'-5' exonuclease fa... 119 0.00014 1
>MGI|MGI:1355322 [details] [associations]
symbol:Exosc10 "exosome component 10" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=ISO] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0000460 "maturation of 5.8S rRNA"
evidence=ISO] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004532 "exoribonuclease activity" evidence=ISO] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO;TAS] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0009048 "dosage
compensation by inactivation of X chromosome" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=ISO] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0071028 "nuclear
mRNA surveillance" evidence=ISO] [GO:0071034 "CUT catabolic
process" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=ISO]
[GO:0071048 "nuclear retention of unspliced pre-mRNA at the site of
transcription" evidence=ISO] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 MGI:MGI:1355322 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 GO:GO:0003723
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0000178 GO:GO:0071035
GO:GO:0008408 GO:GO:0035327 GO:GO:0071044 SUPFAM:SSF47819
GO:GO:0009048 GO:GO:0000460 GO:GO:0000176 GO:GO:0071034 CTD:5394
eggNOG:COG0349 HOGENOM:HOG000001579 HOVERGEN:HBG051524 KO:K12591
OMA:GNKSMSF OrthoDB:EOG4X6C7P ChiTaRS:EXOSC10 GO:GO:0004532
GO:GO:0071048 EMBL:AF091392 EMBL:AF091505 EMBL:AF091506
EMBL:AF092074 EMBL:AF092075 EMBL:AF092076 EMBL:AF092077
EMBL:AF092078 EMBL:AF092079 EMBL:AF092080 EMBL:AF092081
EMBL:AF092082 EMBL:AF092083 EMBL:AL606969 EMBL:AL713995
IPI:IPI00342382 RefSeq:NP_057908.2 UniGene:Mm.266635
ProteinModelPortal:P56960 SMR:P56960 STRING:P56960
PhosphoSite:P56960 PaxDb:P56960 PRIDE:P56960
Ensembl:ENSMUST00000017408 GeneID:50912 KEGG:mmu:50912
GeneTree:ENSGT00390000015408 InParanoid:B1ARY9 NextBio:307899
Bgee:P56960 CleanEx:MM_EXOSC10 Genevestigator:P56960
GermOnline:ENSMUSG00000017264 Uniprot:P56960
Length = 887
Score = 747 (268.0 bits), Expect = 1.4e-84, Sum P(3) = 1.4e-84
Identities = 159/329 (48%), Positives = 211/329 (64%)
Query: 67 KPQEEYK-IVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDIGDVEAVKPP-- 123
+PQ+ + + V A F H + + F HP LD ++ KP
Sbjct: 223 RPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQY--ELDHFTPPQSVLQRPKPQLY 280
Query: 124 -SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVV 182
++ +TP LV + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+V
Sbjct: 281 RAVGETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIV 340
Query: 183 DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE 242
DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L
Sbjct: 341 DTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLA 399
Query: 243 RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 302
R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L
Sbjct: 400 RHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELW--- 456
Query: 303 KESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEW 362
+ + L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L W
Sbjct: 457 ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAW 516
Query: 363 RDVIARADDESTGYVLPNRTLIEIAKQLP 391
RD AR +DES GYVLPN +++IA++LP
Sbjct: 517 RDKTARREDESYGYVLPNHMMLKIAEELP 545
Score = 79 (32.9 bits), Expect = 1.4e-84, Sum P(3) = 1.4e-84
Identities = 54/207 (26%), Positives = 79/207 (38%)
Query: 608 QLKPVDVMKSEPNK-----PDLPFPSSFGSGEQTKP---IIEESNRVTVVSQ---SEEPA 656
Q K ++M+S N P L + + P I E SNR + SQ +EP
Sbjct: 678 QKKAQNIMQSFENPFRMFLPSLEHKAHISQAAKFDPSSKIYEISNRWKLASQVQVQKEPK 737
Query: 657 PAARPXXXXXXXXXXXXXXXXQNLGNLETASAPGEDGSAGSALEMGKQDETMSLSDLSTS 716
A + G LE A + +ALE + + SDL T
Sbjct: 738 EATKKKVAEQTAAREEAKEEAA-AGVLEQAIPVRQQ----AALENATKKRERATSDLRTI 792
Query: 717 FQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEK-SAGVDGNKR 775
Q+ K K + +P G P+D+ + + F D+K K S+ D NK
Sbjct: 793 EQK---QEKKRLKSSKKAKDPDPPG-KDFSPYDYSQSDFRA-FAGDSKSKPSSQFDPNKL 847
Query: 776 KPVNSGDKKKVSAVDQAQKDDGTKELS 802
P SG KK V A + ++ G K +S
Sbjct: 848 AP--SG-KKGVGA-KKCKQSVGNKSMS 870
Score = 53 (23.7 bits), Expect = 1.4e-84, Sum P(3) = 1.4e-84
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 52 RKEKSKV--PFHVPTITKPQEEYKIVVNNANQPF 83
+K KS+ H I +PQ ++ ++N+N PF
Sbjct: 165 KKAKSETFRLLHAKNIVRPQLRFREKIDNSNTPF 198
>UNIPROTKB|E1C525 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0009048 "dosage compensation by inactivation of X
chromosome" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0071034 "CUT catabolic process"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071048 "nuclear retention of
unspliced pre-mRNA at the site of transcription" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
GO:GO:0005737 GO:GO:0005730 GO:GO:0000184 GO:GO:0000166
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408
GO:GO:0035327 GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048
GO:GO:0000460 GO:GO:0000176 GO:GO:0071034 CTD:5394 KO:K12591
OMA:GNKSMSF GO:GO:0004532 GO:GO:0071048
GeneTree:ENSGT00390000015408 EMBL:AADN02040751 IPI:IPI00588624
RefSeq:NP_001012748.1 UniGene:Gga.2286 ProteinModelPortal:E1C525
Ensembl:ENSGALT00000004879 GeneID:419454 KEGG:gga:419454
NextBio:20822508 Uniprot:E1C525
Length = 910
Score = 759 (272.2 bits), Expect = 9.5e-84, Sum P(3) = 9.5e-84
Identities = 156/313 (49%), Positives = 210/313 (67%)
Query: 83 FQHVWLQKSEDSGRFIHP----LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKD 138
F H + + F HP L++ S D V K + + +P +++TP + + +
Sbjct: 258 FIHQQRTQQTEQDMFAHPYQYELEHFSPPDGVLKK-PEPQMYRP--IKETPCHFITTLDE 314
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L EL KL + EFA+DLEH+ YRSFLGLTCLMQISTRTEDF++DTL+LR + L E
Sbjct: 315 LVELNEKLMNCKEFALDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMS-ILNET 373
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNA 258
F DP KV+HGAD D+ WLQ+DFG+YL NMFDT QA+R+L L ++SL++LL +C V+A
Sbjct: 374 FTDPAIVKVLHGADSDVEWLQKDFGLYLVNMFDTHQAARLLNLGKHSLDHLLKLYCSVDA 433
Query: 259 NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKR 318
+K+YQ ADWR+RPLP+EM++YAR+DTHYLLYIYD M+ ++ + T L V++R
Sbjct: 434 DKQYQLADWRIRPLPEEMIQYARDDTHYLLYIYDKMR---EALWERGNEQPTQLKVVWQR 490
Query: 319 SYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVL 378
S D+C + Y K L S+ SYL +Y Q LN QQLA L WRD AR +DES GYVL
Sbjct: 491 SRDICLKKYIKPLFSDESYLELYRRQKKHLNTQQLAAFRLLFSWRDKTARQEDESIGYVL 550
Query: 379 PNRTLIEIAKQLP 391
PN L++IA++LP
Sbjct: 551 PNHMLLKIAEELP 563
Score = 59 (25.8 bits), Expect = 9.5e-84, Sum P(3) = 9.5e-84
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 728 RKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVS 787
++P ++ EE Q PFD+ ++ F +K K + V + + V +G KK +
Sbjct: 823 KRPKASQQPEELEAPKQFTPFDYSKFNFKV-FAGSSKSKQS-VQFDPARQVYTG--KKFA 878
Query: 788 AVDQAQKDDGTKELS 802
++ Q+ G + +S
Sbjct: 879 GANKLQQPAGNRSMS 893
Score = 53 (23.7 bits), Expect = 9.5e-84, Sum P(3) = 9.5e-84
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 61 HVPTITKPQEEYKIVVNNANQPF 83
H I++PQ +++ ++N+N PF
Sbjct: 195 HAKNISRPQLKFREKIDNSNTPF 217
>UNIPROTKB|Q01780 [details] [associations]
symbol:EXOSC10 "Exosome component 10" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009048 "dosage compensation by inactivation of X
chromosome" evidence=IEA] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IMP] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IMP] [GO:0071034 "CUT catabolic
process" evidence=IMP] [GO:0071048 "nuclear retention of unspliced
pre-mRNA at the site of transcription" evidence=IMP] [GO:0035327
"transcriptionally active chromatin" evidence=IMP] [GO:0004532
"exoribonuclease activity" evidence=IDA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP]
[GO:0071028 "nuclear mRNA surveillance" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 EMBL:CH471130
GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0000178 GO:GO:0071035
EMBL:AJ300188 GO:GO:0008408 GO:GO:0035327 GO:GO:0071044
SUPFAM:SSF47819 GO:GO:0009048 GO:GO:0000460 GO:GO:0000176
GO:GO:0071034 EMBL:X66113 EMBL:L01457 EMBL:AL109811 EMBL:BC039901
EMBL:BC073788 IPI:IPI00009464 IPI:IPI00220336 PIR:A43920 PIR:JH0796
RefSeq:NP_001001998.1 RefSeq:NP_002676.1 UniGene:Hs.632368 PDB:2CPR
PDB:3SAF PDB:3SAG PDB:3SAH PDBsum:2CPR PDBsum:3SAF PDBsum:3SAG
PDBsum:3SAH ProteinModelPortal:Q01780 SMR:Q01780 IntAct:Q01780
MINT:MINT-1143843 STRING:Q01780 PhosphoSite:Q01780 DMDM:8928564
SWISS-2DPAGE:Q01780 PaxDb:Q01780 PRIDE:Q01780 DNASU:5394
Ensembl:ENST00000304457 Ensembl:ENST00000376936 GeneID:5394
KEGG:hsa:5394 UCSC:uc001asa.3 UCSC:uc001asb.3 CTD:5394
GeneCards:GC01M011126 HGNC:HGNC:9138 HPA:HPA028470 HPA:HPA028484
MIM:605960 neXtProt:NX_Q01780 PharmGKB:PA33464 eggNOG:COG0349
HOGENOM:HOG000001579 HOVERGEN:HBG051524 InParanoid:Q01780 KO:K12591
OMA:GNKSMSF OrthoDB:EOG4X6C7P PhylomeDB:Q01780 ChiTaRS:EXOSC10
EvolutionaryTrace:Q01780 GenomeRNAi:5394 NextBio:20912
ArrayExpress:Q01780 Bgee:Q01780 CleanEx:HS_EXOSC10
Genevestigator:Q01780 GermOnline:ENSG00000171824 GO:GO:0004532
GO:GO:0071048 Uniprot:Q01780
Length = 885
Score = 736 (264.1 bits), Expect = 9.4e-82, Sum P(3) = 9.4e-82
Identities = 156/330 (47%), Positives = 213/330 (64%)
Query: 67 KPQEEYK-IVVNNANQPFQHVWLQKSEDSGRFIHP----LDNLSVLDFVDKDIGDVEAVK 121
+PQ+ + + V A F H + + F HP L++ + D V + + +
Sbjct: 223 RPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQK-PQPQLYR 281
Query: 122 PPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV 181
P +E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+
Sbjct: 282 P--IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFI 339
Query: 182 VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL 241
+DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L
Sbjct: 340 IDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL 398
Query: 242 ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++ M
Sbjct: 399 GRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE---M 455
Query: 302 PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCE 361
+ L V++RS D+C + + K + ++ SYL +Y Q LN QQL L
Sbjct: 456 WERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFA 515
Query: 362 WRDVIARADDESTGYVLPNRTLIEIAKQLP 391
WRD AR +DES GYVLPN +++IA++LP
Sbjct: 516 WRDKTARREDESYGYVLPNHMMLKIAEELP 545
Score = 63 (27.2 bits), Expect = 9.4e-82, Sum P(3) = 9.4e-82
Identities = 27/95 (28%), Positives = 42/95 (44%)
Query: 727 NRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKV 786
++KP PE E+ + P+D+ + + G + S+ D NK+ P SG KK
Sbjct: 802 SKKPKDPEPPEK-----EFTPYDYSQSDFKAFAGNSKSKVSSQFDPNKQTP--SG--KKC 852
Query: 787 SAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 821
A + ++ G K +S FP TG FR
Sbjct: 853 IAAKKIKQSVGNKSMS-------FP-TGKSDRGFR 879
Score = 53 (23.7 bits), Expect = 9.4e-82, Sum P(3) = 9.4e-82
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 52 RKEKSKV--PFHVPTITKPQEEYKIVVNNANQPF 83
+K KS+ H I +PQ +++ ++N+N PF
Sbjct: 165 KKAKSETFRLLHAKNIIRPQLKFREKIDNSNTPF 198
>RGD|2323986 [details] [associations]
symbol:LOC100366273 "rCG30986-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 RGD:2323986 GO:GO:0000166 GO:GO:0003676
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0000176 GeneTree:ENSGT00390000015408 IPI:IPI00211602
ProteinModelPortal:D4A2C3 Ensembl:ENSRNOT00000014593
ArrayExpress:D4A2C3 Uniprot:D4A2C3
Length = 859
Score = 729 (261.7 bits), Expect = 9.4e-82, Sum P(3) = 9.4e-82
Identities = 145/267 (54%), Positives = 189/267 (70%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP +V + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTED +VDT
Sbjct: 283 VEETPCHVVSSLDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTED-IVDT 341
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 342 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARH 400
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 401 SLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDRMRLELW---ER 457
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
+ L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L WRD
Sbjct: 458 GNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRD 517
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 518 KTARREDESYGYVLPNHMMLKIAEELP 544
Score = 73 (30.8 bits), Expect = 9.4e-82, Sum P(3) = 9.4e-82
Identities = 35/127 (27%), Positives = 52/127 (40%)
Query: 697 SALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQ 756
+ALE + + SDL T Q+ K K + +P G P+D+ Q
Sbjct: 745 AALENATKKRERATSDLRTIEQK---QEKKRLKSSKKAKDPDPPG-KDFSPYDYS----Q 796
Query: 757 IEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQ--GRRRSAFPATG 814
+FG A + +K KP + D KV+ +K G K+ Q G + +FPA G
Sbjct: 797 SDFGAFAGD-------SKSKPSSQFDPNKVAP--SGKKCFGAKKFKQSVGNKSMSFPA-G 846
Query: 815 NRSATFR 821
FR
Sbjct: 847 KSDRGFR 853
Score = 50 (22.7 bits), Expect = 9.4e-82, Sum P(3) = 9.4e-82
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 61 HVPTITKPQEEYKIVVNNANQPF 83
H I +PQ ++ ++N+N PF
Sbjct: 176 HAKNILRPQLRFREKIDNSNTPF 198
>UNIPROTKB|D4A1X2 [details] [associations]
symbol:LOC100366273 "Protein LOC100366273" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0000460 "maturation of
5.8S rRNA" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0009048 "dosage compensation by inactivation of X
chromosome" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0071034 "CUT catabolic process"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071048 "nuclear retention of
unspliced pre-mRNA at the site of transcription" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
RGD:2323986 GO:GO:0005737 GO:GO:0005730 GO:GO:0000184 GO:GO:0000166
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408
GO:GO:0035327 GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048
GO:GO:0000460 GO:GO:0000176 GO:GO:0071034 OMA:GNKSMSF
OrthoDB:EOG4X6C7P GO:GO:0004532 GO:GO:0071048
GeneTree:ENSGT00390000015408 IPI:IPI00359630 PRIDE:D4A1X2
Ensembl:ENSRNOT00000014629 ArrayExpress:D4A1X2 Uniprot:D4A1X2
Length = 884
Score = 729 (261.7 bits), Expect = 9.4e-82, Sum P(3) = 9.4e-82
Identities = 145/267 (54%), Positives = 189/267 (70%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP +V + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTED +VDT
Sbjct: 283 VEETPCHVVSSLDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTED-IVDT 341
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 342 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARH 400
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 401 SLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDRMRLELW---ER 457
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
+ L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L WRD
Sbjct: 458 GNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRD 517
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 518 KTARREDESYGYVLPNHMMLKIAEELP 544
Score = 73 (30.8 bits), Expect = 9.4e-82, Sum P(3) = 9.4e-82
Identities = 35/127 (27%), Positives = 52/127 (40%)
Query: 697 SALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQ 756
+ALE + + SDL T Q+ K K + +P G P+D+ Q
Sbjct: 770 AALENATKKRERATSDLRTIEQK---QEKKRLKSSKKAKDPDPPG-KDFSPYDYS----Q 821
Query: 757 IEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQ--GRRRSAFPATG 814
+FG A + +K KP + D KV+ +K G K+ Q G + +FPA G
Sbjct: 822 SDFGAFAGD-------SKSKPSSQFDPNKVAP--SGKKCFGAKKFKQSVGNKSMSFPA-G 871
Query: 815 NRSATFR 821
FR
Sbjct: 872 KSDRGFR 878
Score = 50 (22.7 bits), Expect = 9.4e-82, Sum P(3) = 9.4e-82
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 61 HVPTITKPQEEYKIVVNNANQPF 83
H I +PQ ++ ++N+N PF
Sbjct: 176 HAKNILRPQLRFREKIDNSNTPF 198
>UNIPROTKB|F1PI20 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0000176 OMA:GNKSMSF
GeneTree:ENSGT00390000015408 EMBL:AAEX03001937
Ensembl:ENSCAFT00000026485 Uniprot:F1PI20
Length = 908
Score = 738 (264.8 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
Identities = 160/330 (48%), Positives = 212/330 (64%)
Query: 67 KPQEEYK-IVVNNANQPFQHVWLQKSEDSGRFIHP----LDNLSVLDFVDKDIGDVEAVK 121
+PQ+ + + V A F H + + F HP LD+ + + V + + +
Sbjct: 245 RPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYELDHFTPPESVLQK-PQPQLYR 303
Query: 122 PPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV 181
P + +TP V + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+
Sbjct: 304 P--VGETPCHFVSSLDELVELNEKLLTCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFI 361
Query: 182 VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL 241
VDTL+LR + L E DPT KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L
Sbjct: 362 VDTLELRSDMY-ILNESLTDPTIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL 420
Query: 242 ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L
Sbjct: 421 GRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWER 480
Query: 302 PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCE 361
E L V++RS D+C + + K L ++ SYL +Y Q LN QQL L
Sbjct: 481 GNEQP---VQLQVVWQRSRDICLKKFVKPLFTDESYLELYRKQKKHLNTQQLTAFQLLFA 537
Query: 362 WRDVIARADDESTGYVLPNRTLIEIAKQLP 391
WRD AR +DES GYVLPN +++IA++LP
Sbjct: 538 WRDKTARREDESYGYVLPNHMMLKIAEELP 567
Score = 54 (24.1 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 52 RKEKSKV--PFHVPTITKPQEEYKIVVNNANQPF 83
+K KS+ H I +PQ +++ ++N+N PF
Sbjct: 187 KKTKSETFRLLHAKNIVRPQLKFREKIDNSNTPF 220
>UNIPROTKB|B4DKG8 [details] [associations]
symbol:EXOSC10 "Exosome component 10" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
GO:GO:0005737 GO:GO:0005730 GO:GO:0000166 GO:GO:0003676
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0000176 EMBL:AL109811 UniGene:Hs.632368 HGNC:HGNC:9138
HOVERGEN:HBG051524 ChiTaRS:EXOSC10 EMBL:AK296559 IPI:IPI01010048
SMR:B4DKG8 STRING:B4DKG8 Ensembl:ENST00000544779 Uniprot:B4DKG8
Length = 679
Score = 736 (264.1 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
Identities = 156/330 (47%), Positives = 213/330 (64%)
Query: 67 KPQEEYK-IVVNNANQPFQHVWLQKSEDSGRFIHP----LDNLSVLDFVDKDIGDVEAVK 121
+PQ+ + + V A F H + + F HP L++ + D V + + +
Sbjct: 223 RPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQK-PQPQLYR 281
Query: 122 PPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV 181
P +E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+
Sbjct: 282 P--IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFI 339
Query: 182 VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL 241
+DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L
Sbjct: 340 IDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL 398
Query: 242 ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++ M
Sbjct: 399 GRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE---M 455
Query: 302 PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCE 361
+ L V++RS D+C + + K + ++ SYL +Y Q LN QQL L
Sbjct: 456 WERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFA 515
Query: 362 WRDVIARADDESTGYVLPNRTLIEIAKQLP 391
WRD AR +DES GYVLPN +++IA++LP
Sbjct: 516 WRDKTARREDESYGYVLPNHMMLKIAEELP 545
Score = 53 (23.7 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 52 RKEKSKV--PFHVPTITKPQEEYKIVVNNANQPF 83
+K KS+ H I +PQ +++ ++N+N PF
Sbjct: 165 KKAKSETFRLLHAKNIIRPQLKFREKIDNSNTPF 198
>UNIPROTKB|F1RHR9 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071048 "nuclear retention of unspliced pre-mRNA at the
site of transcription" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071034 "CUT catabolic process" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0009048
"dosage compensation by inactivation of X chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408 GO:GO:0035327
GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048 GO:GO:0000460
GO:GO:0000176 GO:GO:0071034 CTD:5394 KO:K12591 OMA:GNKSMSF
GO:GO:0004532 GO:GO:0071048 GeneTree:ENSGT00390000015408
EMBL:CU694468 RefSeq:XP_003127631.2 UniGene:Ssc.23524
Ensembl:ENSSSCT00000003785 GeneID:100511264 KEGG:ssc:100511264
Uniprot:F1RHR9
Length = 886
Score = 734 (263.4 bits), Expect = 2.9e-76, Sum P(2) = 2.9e-76
Identities = 158/330 (47%), Positives = 211/330 (63%)
Query: 67 KPQEEYK-IVVNNANQPFQHVWLQKSEDSGRFIHP----LDNLSVLDFVDKDIGDVEAVK 121
+PQ+ + + V A F H + + F HP LD+ + + V + + + +
Sbjct: 223 RPQDRPEDLDVPPALADFIHQQRTRQVEQDMFAHPYQYELDHFTPPESVLQK-PEPQLYR 281
Query: 122 PPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV 181
P +E+TP V + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+
Sbjct: 282 P--VEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFI 339
Query: 182 VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL 241
+DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L
Sbjct: 340 IDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL 398
Query: 242 ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M++ L
Sbjct: 399 GRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLALWER 458
Query: 302 PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCE 361
E L V++RS D+C + + K + ++ SYL +Y Q LN QQL L
Sbjct: 459 GNEQP---AQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNTQQLTAFQLLFA 515
Query: 362 WRDVIARADDESTGYVLPNRTLIEIAKQLP 391
WRD AR +DES GYVLPN +++IA++LP
Sbjct: 516 WRDKTARREDESYGYVLPNHMMLKIAEELP 545
Score = 53 (23.7 bits), Expect = 2.9e-76, Sum P(2) = 2.9e-76
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 52 RKEKSKV--PFHVPTITKPQEEYKIVVNNANQPF 83
+K KS+ H I +PQ +++ ++N+N PF
Sbjct: 165 KKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPF 198
>UNIPROTKB|A7E323 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008408 "3'-5' exonuclease activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 GO:GO:0000166 GO:GO:0003676
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0000176 CTD:5394 eggNOG:COG0349 HOGENOM:HOG000001579
HOVERGEN:HBG051524 KO:K12591 OrthoDB:EOG4X6C7P
GeneTree:ENSGT00390000015408 EMBL:DAAA02042967 EMBL:BC151674
IPI:IPI00904680 RefSeq:NP_001095656.1 UniGene:Bt.59475 SMR:A7E323
STRING:A7E323 Ensembl:ENSBTAT00000057296 GeneID:535340
KEGG:bta:535340 NextBio:20876706 Uniprot:A7E323
Length = 702
Score = 731 (262.4 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
Identities = 153/299 (51%), Positives = 200/299 (66%)
Query: 97 FIHP----LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEF 152
F HP LD+ + D V + + + +P + +TP V + +L EL KL EF
Sbjct: 254 FAHPYQYELDHFTPPDSVLQK-PEPQLYRP--VGETPCHFVSTLDELVELNEKLLKCQEF 310
Query: 153 AVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGAD 212
AVDLEH+ YRSFLGLTCLMQISTRTEDF++DTL+LR + L E DP KV HGAD
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGAD 369
Query: 213 RDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 272
DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPL
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPL 429
Query: 273 PDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL 332
P+EML YAR+DTHYLLYIYD M+++L E T L V++RS D+C + + K +
Sbjct: 430 PEEMLSYARDDTHYLLYIYDKMRLELWERGNEQP---TQLQVVWQRSRDICLKKFIKPIF 486
Query: 333 SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
++ SYL +Y Q LN QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 487 TDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
Score = 53 (23.7 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 52 RKEKSKV--PFHVPTITKPQEEYKIVVNNANQPF 83
+K KS+ H I +PQ +++ ++N+N PF
Sbjct: 165 KKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPF 198
>UNIPROTKB|E1BMZ5 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071048 "nuclear retention of unspliced pre-mRNA at the
site of transcription" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071034 "CUT catabolic process" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0009048
"dosage compensation by inactivation of X chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408 GO:GO:0035327
GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048 GO:GO:0000460
GO:GO:0000176 GO:GO:0071034 OMA:GNKSMSF GO:GO:0004532 GO:GO:0071048
GeneTree:ENSGT00390000015408 EMBL:DAAA02042967 IPI:IPI00698678
Ensembl:ENSBTAT00000003354 ArrayExpress:E1BMZ5 Uniprot:E1BMZ5
Length = 890
Score = 718 (257.8 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 153/302 (50%), Positives = 200/302 (66%)
Query: 97 FIHP----LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEF 152
F HP LD+ + D V + + + +P + +TP V + +L EL KL EF
Sbjct: 254 FAHPYQYELDHFTPPDSVLQK-PEPQLYRP--VGETPCHFVSTLDELVELNEKLLKCQEF 310
Query: 153 AVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGAD 212
AVDLEH+ YRSFLGLTCLMQISTRTEDF++DTL+LR + L E DP KV HGAD
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGAD 369
Query: 213 RDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR-- 270
DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+R
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRNP 429
Query: 271 -PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
PLP+EML YAR+DTHYLLYIYD M+++L E T L V++RS D+C + + K
Sbjct: 430 RPLPEEMLSYARDDTHYLLYIYDKMRLELWERGNEQP---TQLQVVWQRSRDICLKKFIK 486
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
+ ++ SYL +Y Q LN QQL L WRD AR +DES GYVLPN +++IA++
Sbjct: 487 PIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEE 546
Query: 390 LP 391
LP
Sbjct: 547 LP 548
Score = 53 (23.7 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 52 RKEKSKV--PFHVPTITKPQEEYKIVVNNANQPF 83
+K KS+ H I +PQ +++ ++N+N PF
Sbjct: 165 KKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPF 198
>ZFIN|ZDB-GENE-040426-781 [details] [associations]
symbol:exosc10 "exosome component 10" species:7955
"Danio rerio" [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
ZFIN:ZDB-GENE-040426-781 GO:GO:0000166 GO:GO:0003676 GO:GO:0006396
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176
CTD:5394 KO:K12591 OMA:GNKSMSF GeneTree:ENSGT00390000015408
EMBL:CR318666 IPI:IPI00860469 RefSeq:NP_957383.2 UniGene:Dr.75500
Ensembl:ENSDART00000137410 GeneID:394064 KEGG:dre:394064
NextBio:20815021 ArrayExpress:F1Q5Q7 Bgee:F1Q5Q7 Uniprot:F1Q5Q7
Length = 899
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 168/426 (39%), Positives = 243/426 (57%)
Query: 25 FQLVYGKN------KKKGDIVGGSAP--ASVKVKDRKEKSKVPFHVPTITKPQEEYKIVV 76
FQL+ KN K + + + P + + +K K + + + + V
Sbjct: 172 FQLLAAKNIQRPQLKFRDKVDNSNTPFLSKIFIKPNAVKPLPSYFADKHIRKERPEDLDV 231
Query: 77 NNANQPFQHVWLQKSEDSGRFIHP----LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKL 132
A F H K F HP LD+L + + + K +V+ KP +++TP +
Sbjct: 232 PAALADFIHQQRTKEHVDDMFSHPYQYELDHLVMPENL-KCKPEVQMYKP--IDETPCQF 288
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
+ ++DL L KL EFAVDLEH+ YRSFLG+TCLMQISTR EDF++DTL+LR ++
Sbjct: 289 ISTLEDLVALNEKLAKTTEFAVDLEHHSYRSFLGITCLMQISTREEDFIIDTLELRSEMY 348
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L E F DP KV HGAD DI WLQ+DFG+Y+ NMFDT A+R L L RNSL++LL
Sbjct: 349 -ILNETFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHHAARCLNLGRNSLDHLLKV 407
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPL 312
+C V+++K YQ ADWR+RPLPDEML+YA+ DTHYLLY+YD ++ L T +
Sbjct: 408 YCDVSSDKRYQLADWRIRPLPDEMLKYAQADTHYLLYVYDRVRADLFD---GGNGQATLI 464
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
+V+ +S D+ + Y K + +E+SY+ +Y Q N QQLA + WRD +AR +DE
Sbjct: 465 QQVWTKSRDLSLKKYVKPIFTEDSYMELYRKQKKSFNTQQLAAFRLMYAWRDKLAREEDE 524
Query: 373 STGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA-NFEV 431
STGY+LPN +++IA +LP + + + + + +IK + + EV
Sbjct: 525 STGYILPNHMMMKIADELPKEPQGIIACCNPTPPLVRQQINELHQLIKQARETPLLKAEV 584
Query: 432 IAQKLK 437
+AQK K
Sbjct: 585 VAQKRK 590
>DICTYBASE|DDB_G0271572 [details] [associations]
symbol:exosc10 "exosome component 10" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0004527 "exonuclease
activity" evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00474 dictyBase:DDB_G0271572 GO:GO:0005730 GO:GO:0000166
GenomeReviews:CM000151_GR GO:GO:0003676 EMBL:AAFI02000006
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0006402 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0000176 eggNOG:COG0349 KO:K12591
RefSeq:XP_645586.2 ProteinModelPortal:Q55AW0 STRING:Q55AW0
EnsemblProtists:DDB0233752 GeneID:8618039 KEGG:ddi:DDB_G0271572
OMA:LRSHIHM ProtClustDB:CLSZ2847850 Uniprot:Q55AW0
Length = 1195
Score = 687 (246.9 bits), Expect = 4.3e-73, Sum P(4) = 4.3e-73
Identities = 152/376 (40%), Positives = 228/376 (60%)
Query: 48 KVKDRKEKSKVPFHVPTI-TKPQEEYKI-VVNNANQP----FQHVWLQKSEDSGRFIHPL 101
K +D + + PF +P I +KP ++ V + P F + K ++ F HP
Sbjct: 158 KFEDPFDNNNFPF-LPKIRSKPNAMVELDEVFKKSIPKEISFGKIIRSKEQEGIIFPHPY 216
Query: 102 D-NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQ 160
+ ++ + ++ + + L++TPF VE V+ L+EL KL E A+DLEH+
Sbjct: 217 EYEINNFKYTEQQTQQCKEILARGLDETPFTWVETVRQLEELVEKLIHCQEIAIDLEHHS 276
Query: 161 YRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQR 220
YR++ G TCLMQISTR+EDF++DTL LR + L +VF +P+ KV+HG+D DI WLQR
Sbjct: 277 YRTYQGFTCLMQISTRSEDFLIDTLLLRSHIH-MLNQVFTNPSIVKVLHGSDSDIKWLQR 335
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
DFG+Y+ NMFDTGQASR+L+ SL +LL +C ++ANK+YQ ADWR+R LP+EM++YA
Sbjct: 336 DFGVYIVNMFDTGQASRILEYPSASLAFLLKFYCAIDANKKYQLADWRIRKLPEEMIKYA 395
Query: 281 REDTHYLLYIYDIMKIKLSSMPKE-------SENSDTPLT---------EVYKRSYDVCR 324
REDTHYLLYIYD ++ +L S + S N+ T T EV +RS ++
Sbjct: 396 REDTHYLLYIYDRLRNELISKGNKNLGSSGTSTNTSTSTTTQLNNHLLLEVLRRSRELSL 455
Query: 325 QLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 384
YEK++L +NS+++ + QL V+ L WR+ +AR +DES Y+LPN+ ++
Sbjct: 456 LRYEKDILDDNSHINFAKKLNLQYSPTQLNVLKVLYHWREGLARDEDESVRYILPNQMML 515
Query: 385 EIAKQLPTTAAKLRRL 400
I ++ PT+ +L L
Sbjct: 516 TIVERQPTSVQELLTL 531
Score = 45 (20.9 bits), Expect = 4.3e-73, Sum P(4) = 4.3e-73
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 703 KQDETMSLS-DLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLK 746
K++ ++S + LSTS S NN K K E + F LK
Sbjct: 960 KENSSISATTSLSTSPSSLLDSTNNPPKSKKDENASVTDTFSFLK 1004
Score = 44 (20.5 bits), Expect = 5.4e-73, Sum P(4) = 5.4e-73
Identities = 23/106 (21%), Positives = 39/106 (36%)
Query: 716 SFQECFHSANNNRKPGKPERS-EEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNK 774
S QE + +N NR+ K ++ +E S + K K D N
Sbjct: 938 SMQEIYQLSNMNRRRNKEKKKLKENSSISATTSLSTSPSSLLDSTNNPPKSKK---DENA 994
Query: 775 RKPVNSGDKKKVSAVDQAQKDDGTKELSQG-RRRSAFPATGNRSAT 819
K++ ++ Q D K +SQ +++ A AT + T
Sbjct: 995 SVTDTFSFLKEIGWINNEQSADSFKPVSQQLQQQPASSATATTTTT 1040
Score = 41 (19.5 bits), Expect = 4.3e-73, Sum P(4) = 4.3e-73
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 60 FHVPTITKPQEEYKIVVNNANQPF 83
F+ I +PQ +++ +N N PF
Sbjct: 147 FYGNNIVRPQHKFEDPFDNNNFPF 170
Score = 39 (18.8 bits), Expect = 4.3e-73, Sum P(4) = 4.3e-73
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 513 HPGEAIASENKEATHISTLSSSGQSRDLNACKSP 546
H ++ ++ N T +T +++ S +LN + P
Sbjct: 903 HSNDSTSTSNSTTTTTTTTTANTSSSNLNNNQVP 936
>POMBASE|SPAC1F3.01 [details] [associations]
symbol:rrp6 "exosome 3'-5' exoribonuclease subunit Rrp6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0034661
"ncRNA catabolic process" evidence=ISO] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 PomBase:SPAC1F3.01 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003723
SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0071038 SUPFAM:SSF47819
GO:GO:0000176 GO:GO:0000175 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 eggNOG:COG0349 KO:K12591
PIR:T38769 RefSeq:NP_593004.2 ProteinModelPortal:Q10146
STRING:Q10146 EnsemblFungi:SPAC1F3.01.1 GeneID:2543630
KEGG:spo:SPAC1F3.01 OMA:YGIVCLM OrthoDB:EOG4SJ8P0 NextBio:20804636
Uniprot:Q10146
Length = 777
Score = 592 (213.5 bits), Expect = 8.1e-66, Sum P(3) = 8.1e-66
Identities = 132/344 (38%), Positives = 199/344 (57%)
Query: 124 SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVD 183
S+++T V L ++ +L++ E AVDLEH+ YRSF G CLMQIS R +D++VD
Sbjct: 212 SVDETEPIWVSTESQLSDMLKELQNSKEIAVDLEHHDYRSFRGFVCLMQISNREKDWIVD 271
Query: 184 TLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLER 243
TL+LR ++ L VF +P KV HGA DI+WLQRDFG+Y+ N+FDT A++VL E
Sbjct: 272 TLELREELEA-LNVVFTNPNIIKVFHGATMDIIWLQRDFGLYVVNLFDTYYATKVLGFEG 330
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
+ L +LL +C +A+K YQ ADWR+RPLP EML+YA+ DTHYLLYI+D ++ +L S K
Sbjct: 331 HGLAFLLQKYCDYDADKRYQMADWRIRPLPREMLKYAQSDTHYLLYIWDHLRNELIS--K 388
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKEL------LSENSYLHIYGLQGAG--LNAQQLAV 355
+E + + V+ S + + YE E L + + ++ G+ + + L +
Sbjct: 389 SAERKENLMQSVFNSSKQISLRKYELEPYDPIYGLGTDGWRNVLTKFGSSKIIGREALMI 448
Query: 356 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPV 415
L +WRD +AR +DES YVLPNR LI IA P AA + + K Y+ +
Sbjct: 449 YRALHDWRDSVARKEDESVRYVLPNRLLIAIAASKPVEAADVFSISKQLTPIARMYVEDI 508
Query: 416 LSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNL 459
+ +++ + + N +V + K + EV + + V S+ L
Sbjct: 509 VKVVQEA-EKLYNEQV--DREKSQFKEVEKQNQPLAVFSESNTL 549
Score = 68 (29.0 bits), Expect = 8.1e-66, Sum P(3) = 8.1e-66
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 34 KKGDIVGGSAPASVKVKDRKEKSKVPF---HVPTITKPQEEYKIVVNNANQPFQHVWLQK 90
KK I ++ + V K K K K+P+ H +TKPQ +++ NN+ + F VW K
Sbjct: 101 KKPAIETHASTSDVANKKPK-KEKLPYKVIHAAHLTKPQLRFRVQPNNSRE-F--VWSWK 156
Query: 91 SEDSGRFIHPLDNL 104
+ + PL+ +
Sbjct: 157 LTEKPHSLVPLEKI 170
Score = 40 (19.1 bits), Expect = 8.1e-66, Sum P(3) = 8.1e-66
Identities = 19/83 (22%), Positives = 34/83 (40%)
Query: 694 SAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKP--ERSEEPSGFLQLKPFDFE 751
+A +L K+ E + + DL + Q+ S N+++P P ER+E D E
Sbjct: 631 AANPSLNGEKKQEPIVIRDLGLNKQKRDSSKLNHKEPSNPIEERNE-----------DIE 679
Query: 752 AARKQIEFGEDAKEKSAGVDGNK 774
+ + K+K + K
Sbjct: 680 PSEASTSVSKKRKQKKKKKNSGK 702
>WB|WBGene00000796 [details] [associations]
symbol:crn-3 species:6239 "Caenorhabditis elegans"
[GO:0006396 "RNA processing" evidence=IEA;TAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0006309 "apoptotic DNA
fragmentation" evidence=IGI;IMP] [GO:0043277 "apoptotic cell
clearance" evidence=IDA] [GO:0000178 "exosome (RNase complex)"
evidence=TAS] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0000178
GO:GO:0006309 GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176
GO:GO:0043277 EMBL:Z49909 KO:K12591 GeneTree:ENSGT00390000015408
EMBL:AY303577 PIR:T19246 RefSeq:NP_496283.1 UniGene:Cel.7455
ProteinModelPortal:G5EBX6 SMR:G5EBX6 PRIDE:G5EBX6
EnsemblMetazoa:C14A4.4a GeneID:3565889 KEGG:cel:CELE_C14A4.4
CTD:3565889 WormBase:C14A4.4a OMA:TEEEHPY NextBio:958247
Uniprot:G5EBX6
Length = 876
Score = 624 (224.7 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
Identities = 149/422 (35%), Positives = 231/422 (54%)
Query: 54 EKSKVPFHVPTITKPQEEYK---IVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFV 110
+ S+ PF K K IV+++ ++ + W+ +E HP +L F
Sbjct: 199 DNSQAPFSSKLTVKHHAIEKRTGIVLHDDDESGRRDWIS-AETETEEEHPYI-AEILHFK 256
Query: 111 --DKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLT 168
+ + E +K +L+ TP +++ + L+ L L SV EFAVDLEH+Q RS+LGLT
Sbjct: 257 VPEAQLKSAECLKFTALKDTPLTMIDTKEKLEALTKTLNSVKEFAVDLEHHQMRSYLGLT 316
Query: 169 CLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 228
CL+QISTR EDF++D + VG L E F +P KV HG+D D++WLQRD+G+++ N
Sbjct: 317 CLIQISTRDEDFIIDPFPIWDHVG-MLNEPFANPRILKVFHGSDSDVLWLQRDYGVHVVN 375
Query: 229 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 288
+FDT A + LK + SL YL F V +K+YQ ADWR RPL + M+ YAREDTHYLL
Sbjct: 376 LFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLL 435
Query: 289 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 348
Y YD+++ +L + + D L VY S D+C ++Y+K + + YL + L
Sbjct: 436 YSYDMLREQLL----KQDTKD--LANVYSESSDLCIKVYKKPVFNPKGYLTEIKFRFT-L 488
Query: 349 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 408
N +Q + L +WRDV+ARA+DES +VLPN ++ +++ LP + ++
Sbjct: 489 NTRQDYALTHLFKWRDVVARAEDESPHFVLPNHMMLSLSETLPRDVGGIYACCNPLPYFV 548
Query: 409 ERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRES 468
++ G +L II + E + KE ++E ++ DT + I +V +
Sbjct: 549 KQRTGDILKIIVEARD--VKLEKVGLSAKERN---DAQEARGVMNDTMDH--ITSVLKSK 601
Query: 469 VD 470
+D
Sbjct: 602 ID 603
Score = 172 (65.6 bits), Expect = 6.2e-10, Sum P(3) = 6.2e-10
Identities = 80/353 (22%), Positives = 161/353 (45%)
Query: 309 DTP-LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
DT L VY S D+C ++Y+K + + YL + LN +Q + L +WRDV+A
Sbjct: 449 DTKDLANVYSESSDLCIKVYKKPVFNPKGYLTEIKFRFT-LNTRQDYALTHLFKWRDVVA 507
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 427
RA+DES +VLPN ++ +++ LP + ++++ G +L II
Sbjct: 508 RAEDESPHFVLPNHMMLSLSETLPRDVGGIYACCNPLPYFVKQRTGDILKII-------- 559
Query: 428 NFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYT 487
V A+ +K E++ ++++E D + N +++D + +++ + + ++T
Sbjct: 560 ---VEARDVKLEKVGLSAKERN----DAQEARGVMN---DTMDHITSVLKSKIDF--SHT 607
Query: 488 QLKQEPPKVGSSVAELDRNGLGSFAHPGEAIAS--ENKEATHISTLSSSGQSRDLNACKS 545
+ +E ++ + + D E++ S + E + T+ + + KS
Sbjct: 608 RFDEERGEI--YIDKTDEGMDIELKDHKESLLSVLQTAEIPSVETMIVVEKGK-----KS 660
Query: 546 PSPRVTEAAVQALK--KPNRGFGALLGNPKRKFDGEKKDKEAMKLEQ------IKSSVNL 597
+ +V + + K P + ++ +++ + E+K+ E KLE+ + S +
Sbjct: 661 DNQKVKKLLNELDKFVTPFECYQMMMITKEKQEEEERKEAERKKLEEGDLPKTMFSHHDA 720
Query: 598 PFHSIFARDEQLKPVDVMK---SEPNKPDLPFPSSFGSGEQTKPIIEESNRVT 647
P + D +L VD +K +PNKP P PS ++P I + +R T
Sbjct: 721 PINRKPEFDAKLLNVDTLKLVPDDPNKPKDPEPSPMEESS-SEPQIFDPSRFT 772
Score = 59 (25.8 bits), Expect = 6.2e-10, Sum P(3) = 6.2e-10
Identities = 22/91 (24%), Positives = 40/91 (43%)
Query: 48 KVKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQK----SEDSGRFIHPLDN 103
K ++R+E++ + + KPQ+ Y I +N+ PF K + +G +H D
Sbjct: 173 KFRERREEAA---QMVVLEKPQKTYNISSDNSQAPFSSKLTVKHHAIEKRTGIVLHDDDE 229
Query: 104 LSVLDFVDKDIGDVEAVKPPSLEQTPFKLVE 134
D++ + + E P E FK+ E
Sbjct: 230 SGRRDWISAET-ETEEEHPYIAEILHFKVPE 259
Score = 44 (20.5 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 751 EAARKQIEFGEDAKEKSAGVDGNKRK-----PVNSGDKKKV--SAVDQAQKDD 796
+AAR+ I+ E S+ D K+K PV D +K SA ++ +D+
Sbjct: 787 DAARRNIDVSVVLGESSSSSDPKKKKSDDDAPVEDFDYEKADSSAFEKPVRDN 839
Score = 42 (19.8 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
Identities = 22/103 (21%), Positives = 40/103 (38%)
Query: 539 DLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRKFDGEKKDKEAMKLEQIKSSVNLP 598
D N K P P E ++ +P + +P R D + K+AMK ++ + N+
Sbjct: 744 DPNKPKDPEPSPME---ESSSEPQ------IFDPSRFTDDQLLSKKAMKRKRDAARRNID 794
Query: 599 FHSIFARDEQLKPVDVMKSEPNKP--DLPFPSSFGSGEQTKPI 639
+ KS+ + P D + + S + KP+
Sbjct: 795 VSVVLGESSSSSDPKKKKSDDDAPVEDFDYEKADSSAFE-KPV 836
>FB|FBgn0038269 [details] [associations]
symbol:Rrp6 "Rrp6" species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005652 "nuclear lamina" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP]
[GO:0071027 "nuclear RNA surveillance" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 EMBL:AE014297
GO:GO:0005730 GO:GO:0000166 GO:GO:0006378 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0010468 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0005652 GO:GO:0000176 KO:K12591 GeneTree:ENSGT00390000015408
GO:GO:0071027 RefSeq:NP_001097795.1 UniGene:Dm.7279
ProteinModelPortal:Q9VFF3 SMR:Q9VFF3 IntAct:Q9VFF3 STRING:Q9VFF3
PRIDE:Q9VFF3 EnsemblMetazoa:FBtr0113235 GeneID:41798
KEGG:dme:Dmel_CG7292 UCSC:CG7292-RB CTD:41798 FlyBase:FBgn0038269
InParanoid:Q9VFF3 OMA:FERITTN OrthoDB:EOG4THT8C PhylomeDB:Q9VFF3
GenomeRNAi:41798 NextBio:825622 ArrayExpress:Q9VFF3 Bgee:Q9VFF3
Uniprot:Q9VFF3
Length = 900
Score = 618 (222.6 bits), Expect = 3.0e-62, Sum P(2) = 3.0e-62
Identities = 137/375 (36%), Positives = 217/375 (57%)
Query: 35 KGDIVGGSAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQ-PFQH-------- 85
+G GS + R S F I +PQ +++ V+N+ Q PF
Sbjct: 159 QGTPKAGSWNRTTGTPQRSMVSARLFTAKNIVRPQTQFREPVDNSAQNPFVPRLKEKPNS 218
Query: 86 ----VWLQKSEDSGR---FIHPLDNLSVLDFV--DKDIGDVEAVKPPSLEQTPFKLVEEV 136
L + +D+G ++HP + +L F ++ + V P + +T +V+ V
Sbjct: 219 LKPLALLPEYDDAGNVQSYLHPYE-FELLKFQPPEEQFQKQKPVLPALMAETELMVVDTV 277
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
+ LK+ +L+ + A+D+EH+ YR+F+G+TCL+Q+STR++D++ DTL LR + L
Sbjct: 278 EKLKQALEELRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKDYIFDTLILRDDMH-ILN 336
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGV 256
V DP K K++HGAD DI WLQRD +Y+ NMFDT +A++ L + R SL YLL H+ +
Sbjct: 337 LVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNMARLSLAYLLKHYLDL 396
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
+ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+Y M L + + +E L VY
Sbjct: 397 DVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYGRMTNDL--LQQHAEPG--LLGSVY 452
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
++S DVC++ Y K + S+L + + +QL + G+ EWRD AR++DES GY
Sbjct: 453 QQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQLYALRGIFEWRDATARSEDESYGY 512
Query: 377 VLPNRTLIEIAKQLP 391
VLPN +++IA+ LP
Sbjct: 513 VLPNHMMLQIAESLP 527
Score = 41 (19.5 bits), Expect = 3.0e-62, Sum P(2) = 3.0e-62
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 587 KLEQIKSSVNLPFHSIFARDEQLKPVDVM-KSEPNK--PDLPFPSSFGSGEQTKPIIEES 643
+LE+I+ +LP ++ R+ ++V K E K P L P+ +Q+KP EE
Sbjct: 597 QLEEIRD--DLP--TLLKRNSTTGKLEVPNKEEVAKVDPTLAAPAMALFEKQSKPTQEEE 652
Query: 644 NR 645
R
Sbjct: 653 QR 654
>UNIPROTKB|Q95Z10 [details] [associations]
symbol:RRP6 "Rrp6p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00474 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0000178
GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176 EMBL:AJ309000
ProteinModelPortal:Q95Z10 IntAct:Q95Z10 STRING:Q95Z10
EuPathDB:TriTrypDB:Tb427.04.1630 EuPathDB:TriTrypDB:Tb927.4.1630
Uniprot:Q95Z10
Length = 703
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 135/371 (36%), Positives = 212/371 (57%)
Query: 64 TITKPQEEYKIVVNNANQPFQHVWLQKS--EDSGR-FIHPL-DNLSVLDFVDKDIGDVEA 119
++ +PQ ++ V+N+ PF+ V+ + G +HP + + + + + +
Sbjct: 143 SVLRPQLTFEHPVDNSPTPFRPVYYDEKGVRHVGEPGVHPFAERIKAVSVPSEQL--LLK 200
Query: 120 VKPP--SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRT 177
+ P SL P V+ V+DL+ L A L + E AVDLEH+ + S+ G TCLMQISTRT
Sbjct: 201 TETPYLSLVTCPLTFVDTVEDLEALVAVLLNETEIAVDLEHHDFYSYQGFTCLMQISTRT 260
Query: 178 EDFVVDTLKLRVQVGPYLRE-VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
+DF+VD LK+R + YL VF P KV HGA D+ WLQ+DFG+Y+ N+FDT A
Sbjct: 261 QDFIVDCLKVRANM--YLMAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNLFDTSIAL 318
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296
+ L + +SL + + HFC V NK+YQ ADWRVRP+P EM+ YA++DTH+LLY+YD +K
Sbjct: 319 QNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLYVYDRLKQ 377
Query: 297 KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN-SYLHIYGLQGAGLNAQQLAV 355
L + + + L V++ S + + YEK L + +Y G GL++ QL V
Sbjct: 378 LLLNCEARASVGNM-LLHVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGLSSPQLQV 436
Query: 356 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPV 415
+ WRD+ AR D+S V+ ++ IA +LPT+A ++ + + + +
Sbjct: 437 AREIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVAVRTNVMKL 496
Query: 416 LSIIKNSMQNA 426
L I+K+++ +A
Sbjct: 497 LQIVKDAIGSA 507
>TAIR|locus:504955936 [details] [associations]
symbol:AT2G32415 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005576
"extracellular region" evidence=ISM] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 Pfam:PF00570 Pfam:PF01612
SMART:SM00474 EMBL:CP002685 GO:GO:0000166 GO:GO:0003676
GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
KO:K12591 IPI:IPI00520495 RefSeq:NP_850189.5 UniGene:At.47141
ProteinModelPortal:F4ITQ6 SMR:F4ITQ6 PRIDE:F4ITQ6
EnsemblPlants:AT2G32415.1 GeneID:817803 KEGG:ath:AT2G32415
OMA:ICVGCGE Uniprot:F4ITQ6
Length = 891
Score = 581 (209.6 bits), Expect = 3.1e-55, P = 3.1e-55
Identities = 150/369 (40%), Positives = 204/369 (55%)
Query: 52 RKEKSKVPF-HVPTITKPQEEYK-IVVNNANQPFQHVWLQKSEDSGRFI----HPLDN-L 104
RK+ S + ++ + KPQ +K ++ +N+ F+H+ L + S HP + +
Sbjct: 34 RKQTSSLSSCYLHSELKPQFGFKRVLADNSYSEFKHLKLVDASSSSLEKPSNGHPYETEI 93
Query: 105 SVL-DFVDKDIGDVEAVKPPSLEQTP-FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYR 162
+VL + + G + SLE + + VE LKELA L FAVD E + R
Sbjct: 94 TVLLENPQIEFGFLRG--ECSLEMSDSYVWVETESQLKELAEILAKEQVFAVDTEQHSLR 151
Query: 163 SFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDF 222
SFLG T L+QIST EDF+VDT+ L V LR VF DP KV HGAD D++WLQRDF
Sbjct: 152 SFLGFTALIQISTHEEDFLVDTIALH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDF 210
Query: 223 GIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARE 282
IY+ NMFDT +A VL + SL YLL CGV NK Q DWR RPL +EM+RYAR
Sbjct: 211 HIYVVNMFDTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYART 270
Query: 283 DTHYLLYIYDIMKIKLSSMPKESENSDTP---LTEVYKRSYDVCRQLYEKEL------LS 333
D HYLLYI D + +L + +S + D L E +RS C QLY KE +
Sbjct: 271 DAHYLLYIADSLTTELKQLATDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAA 330
Query: 334 ENS--YLHIYG---LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 388
+S Y H+ G LNA++L V LC WRD++ R DEST YVL ++ ++ ++
Sbjct: 331 SSSIIYRHLNGHGDKSNISLNAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSC 388
Query: 389 QLPTTAAKL 397
+ PTT ++
Sbjct: 389 KQPTTTEEI 397
>ASPGD|ASPL0000094155 [details] [associations]
symbol:AN11773 species:162425 "Emericella nidulans"
[GO:0071036 "nuclear polyadenylation-dependent snoRNA catabolic
process" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071049 "nuclear
retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0000973 "posttranscriptional tethering of RNA
polymerase II gene DNA at nuclear periphery" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IEA] [GO:0071037
"nuclear polyadenylation-dependent snRNA catabolic process"
evidence=IEA] [GO:0071040 "nuclear polyadenylation-dependent
antisense transcript catabolic process" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IEA]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 InterPro:IPR019465
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 Pfam:PF10392 PROSITE:PS50967
SMART:SM00474 GO:GO:0000166 GO:GO:0003676 GO:GO:0006396
SUPFAM:SSF53098 EMBL:BN001303 GO:GO:0008408 EMBL:AACD01000084
SUPFAM:SSF47819 GO:GO:0000176 eggNOG:COG0349 KO:K12591
OrthoDB:EOG4SJ8P0 RefSeq:XP_662605.1 ProteinModelPortal:Q5B379
STRING:Q5B379 EnsemblFungi:CADANIAT00005393 GeneID:2872798
KEGG:ani:AN5001.2 Uniprot:Q5B379
Length = 1297
Score = 565 (203.9 bits), Expect = 4.3e-52, P = 4.3e-52
Identities = 167/507 (32%), Positives = 245/507 (48%)
Query: 117 VEAVKPPSLEQTPFK-----LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLM 171
V V PP ++ PF+ V+ + +KE+ A+LKS E A+DLEH+ S+ GL LM
Sbjct: 213 VYTVSPP-IDYLPFETTAATFVDTLDGVKEMLAELKSAREIAIDLEHHDVHSYHGLVSLM 271
Query: 172 QISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 231
QISTR +D+VVDTLK + L EVF DP K+ HG+ DI+WLQRD G+Y+ MFD
Sbjct: 272 QISTREKDWVVDTLKPWREELQMLNEVFADPNILKLFHGSSMDIIWLQRDLGLYVVGMFD 331
Query: 232 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 291
T A+ L + SL+YLLH F A+K+YQ ADWR+RPLP M YAR DTHYLLYIY
Sbjct: 332 TYHAACALNYPKKSLKYLLHKFVNFEADKQYQMADWRIRPLPSGMFNYARSDTHYLLYIY 391
Query: 292 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------NSYLHIYGLQG 345
D ++ +L + S D + V ++S Q YE+ + + +
Sbjct: 392 DNLRNELLT---NSTPEDNLVDYVLEKSKTEALQRYERPVYDAATGQGAGGWYDLMTRSP 448
Query: 346 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 405
A L+++Q AV+ + EWRD +AR +DE V P L +A+ +P L R + S
Sbjct: 449 AILSSEQFAVLKAVHEWRDRVAREEDEGVQCVFPKHILFRVAQAMPQDLGTLFRTM-SPM 507
Query: 406 SYIERYMGP-VLSIIKNSMQNAAN---FEVIAQKLKEERMEVASEETEVLVLDTSSNLKI 461
+ I + P +L +IK + A + + K +V + + D S
Sbjct: 508 TPIAKDRAPDLLQVIKTAKAEGATGPEWRDVYVKPTRGLPQVEAPPSPPTAQDGS----F 563
Query: 462 PNVGR-ESVDGVDALVGT-TMPHPPAYT--------QLKQEPPKVGSSVAELDRNGLGSF 511
P R E+ A++ T T P P Y+ +L P + +VAE+
Sbjct: 564 PTASRYETSQFWGAVLDTQTPPLSPEYSLAASAEALRLSLPIPPMPRTVAEVQVAQPPKP 623
Query: 512 AHPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGA---- 567
P A E ++ I T+ G R A P P E + Q+ ++P
Sbjct: 624 TSPTPAPKKEEEDKNKIFTVKELGGPRKRKAAPQP-PAEVETSSQS-EEPQAELDLDEIP 681
Query: 568 -LLGNPKRKFDGEKKDKEAMKLEQIKS 593
+G+P K K+ +E K +Q +S
Sbjct: 682 IEIGSPPSKKQRRKEKREKKKAKQNQS 708
>ASPGD|ASPL0000095540 [details] [associations]
symbol:AN11774 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
InterPro:IPR019465 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
Pfam:PF10392 PROSITE:PS50967 SMART:SM00474 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 EMBL:BN001303
GO:GO:0008408 EMBL:AACD01000084 SUPFAM:SSF47819 GO:GO:0000176
eggNOG:COG0349 KO:K12591 OrthoDB:EOG4SJ8P0 RefSeq:XP_662605.1
ProteinModelPortal:Q5B379 STRING:Q5B379
EnsemblFungi:CADANIAT00005393 GeneID:2872798 KEGG:ani:AN5001.2
Uniprot:Q5B379
Length = 1297
Score = 565 (203.9 bits), Expect = 4.3e-52, P = 4.3e-52
Identities = 167/507 (32%), Positives = 245/507 (48%)
Query: 117 VEAVKPPSLEQTPFK-----LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLM 171
V V PP ++ PF+ V+ + +KE+ A+LKS E A+DLEH+ S+ GL LM
Sbjct: 213 VYTVSPP-IDYLPFETTAATFVDTLDGVKEMLAELKSAREIAIDLEHHDVHSYHGLVSLM 271
Query: 172 QISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 231
QISTR +D+VVDTLK + L EVF DP K+ HG+ DI+WLQRD G+Y+ MFD
Sbjct: 272 QISTREKDWVVDTLKPWREELQMLNEVFADPNILKLFHGSSMDIIWLQRDLGLYVVGMFD 331
Query: 232 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 291
T A+ L + SL+YLLH F A+K+YQ ADWR+RPLP M YAR DTHYLLYIY
Sbjct: 332 TYHAACALNYPKKSLKYLLHKFVNFEADKQYQMADWRIRPLPSGMFNYARSDTHYLLYIY 391
Query: 292 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------NSYLHIYGLQG 345
D ++ +L + S D + V ++S Q YE+ + + +
Sbjct: 392 DNLRNELLT---NSTPEDNLVDYVLEKSKTEALQRYERPVYDAATGQGAGGWYDLMTRSP 448
Query: 346 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 405
A L+++Q AV+ + EWRD +AR +DE V P L +A+ +P L R + S
Sbjct: 449 AILSSEQFAVLKAVHEWRDRVAREEDEGVQCVFPKHILFRVAQAMPQDLGTLFRTM-SPM 507
Query: 406 SYIERYMGP-VLSIIKNSMQNAAN---FEVIAQKLKEERMEVASEETEVLVLDTSSNLKI 461
+ I + P +L +IK + A + + K +V + + D S
Sbjct: 508 TPIAKDRAPDLLQVIKTAKAEGATGPEWRDVYVKPTRGLPQVEAPPSPPTAQDGS----F 563
Query: 462 PNVGR-ESVDGVDALVGT-TMPHPPAYT--------QLKQEPPKVGSSVAELDRNGLGSF 511
P R E+ A++ T T P P Y+ +L P + +VAE+
Sbjct: 564 PTASRYETSQFWGAVLDTQTPPLSPEYSLAASAEALRLSLPIPPMPRTVAEVQVAQPPKP 623
Query: 512 AHPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGA---- 567
P A E ++ I T+ G R A P P E + Q+ ++P
Sbjct: 624 TSPTPAPKKEEEDKNKIFTVKELGGPRKRKAAPQP-PAEVETSSQS-EEPQAELDLDEIP 681
Query: 568 -LLGNPKRKFDGEKKDKEAMKLEQIKS 593
+G+P K K+ +E K +Q +S
Sbjct: 682 IEIGSPPSKKQRRKEKREKKKAKQNQS 708
>SGD|S000005527 [details] [associations]
symbol:RRP6 "Nuclear exosome exonuclease component"
species:4932 "Saccharomyces cerevisiae" [GO:0034475 "U4 snRNA
3'-end processing" evidence=IGI;IMP] [GO:0008408 "3'-5' exonuclease
activity" evidence=IEA] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0034476 "U5 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA;IDA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IMP] [GO:0071049 "nuclear retention of pre-mRNA with
aberrant 3'-ends at the site of transcription" evidence=IGI]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IGI;IMP] [GO:0071037 "nuclear
polyadenylation-dependent snRNA catabolic process" evidence=IMP]
[GO:0071040 "nuclear polyadenylation-dependent antisense transcript
catabolic process" evidence=IMP] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IGI;IDA]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=IMP] [GO:0071036 "nuclear
polyadenylation-dependent snoRNA catabolic process" evidence=IMP]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IGI;IMP] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000973
"posttranscriptional tethering of RNA polymerase II gene DNA at
nuclear periphery" evidence=IMP] [GO:0071033 "nuclear retention of
pre-mRNA at the site of transcription" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 SGD:S000005527
GO:GO:0005730 EMBL:BK006948 GO:GO:0000166 GO:GO:0003723
SUPFAM:SSF53098 GO:GO:0071039 GO:GO:0071035 GO:GO:0071036
GO:GO:0071037 GO:GO:0071038 EMBL:U43491 GO:GO:0071044
SUPFAM:SSF47819 GO:GO:0000176 GO:GO:0000175 GO:GO:0000467
GO:GO:0071042 GO:GO:0071051 eggNOG:COG0349 KO:K12591
GeneTree:ENSGT00390000015408 GO:GO:0000973 GO:GO:0034475
GO:GO:0034476 GO:GO:0071049 GO:GO:0071040 GO:GO:0034473 OMA:YGIVCLM
OrthoDB:EOG4SJ8P0 EMBL:Z74909 EMBL:AY692850 PIR:S61984
RefSeq:NP_014643.1 PDB:1M0Y PDB:2HBJ PDB:2HBK PDB:2HBL PDB:2HBM
PDBsum:1M0Y PDBsum:2HBJ PDBsum:2HBK PDBsum:2HBL PDBsum:2HBM
ProteinModelPortal:Q12149 SMR:Q12149 DIP:DIP-4560N IntAct:Q12149
MINT:MINT-534618 STRING:Q12149 PaxDb:Q12149 EnsemblFungi:YOR001W
GeneID:854162 KEGG:sce:YOR001W CYGD:YOR001w HOGENOM:HOG000196525
EvolutionaryTrace:Q12149 NextBio:975938 Genevestigator:Q12149
GermOnline:YOR001W Uniprot:Q12149
Length = 733
Score = 534 (193.0 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 130/341 (38%), Positives = 190/341 (55%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
V+ +L+ + LK+ E AVDLEH+ YRS+ G+ CLMQISTR D++VDTLKLR +
Sbjct: 216 VDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLH 275
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT AS+ + L R+SL YLL +
Sbjct: 276 -ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLEN 334
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK------ESE 306
F +K+YQ ADWR+RPL M YAR DTH+LL IYD ++ KL K ES
Sbjct: 335 FANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESR 394
Query: 307 NSDTPLTEVYK-RSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
N E K R ++Y + + S I Q + ++ +V L +WRD+
Sbjct: 395 NVAKRRFEYSKYRPLTPSSEVYSP--IEKESPWKILMYQ-YNIPPEREVLVRELYQWRDL 451
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQN 425
IAR DDES +V+PN+ L + PT + L ++ + + ++I+++++N
Sbjct: 452 IARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRN 511
Query: 426 AANFEVIAQKLKEERMEVASEETEV--LVLDTSSNLKIPNV 464
N EE + S ET+ ++L+T S +I +V
Sbjct: 512 IKN-------TNEEATPIPSSETKADGILLETISVPQIRDV 545
>CGD|CAL0000608 [details] [associations]
symbol:RRP6 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0071036 "nuclear polyadenylation-dependent snoRNA
catabolic process" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=IEA] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
the site of transcription" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0000973 "posttranscriptional tethering of RNA
polymerase II gene DNA at nuclear periphery" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071037 "nuclear polyadenylation-dependent snRNA catabolic
process" evidence=IEA] [GO:0034473 "U1 snRNA 3'-end processing"
evidence=IEA] [GO:0071040 "nuclear polyadenylation-dependent
antisense transcript catabolic process" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IEA]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00474 CGD:CAL0000608 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 GO:GO:0035690 SUPFAM:SSF53098
GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176 EMBL:AACQ01000231
RefSeq:XP_710869.1 ProteinModelPortal:Q59MB4 SMR:Q59MB4
STRING:Q59MB4 GeneID:3647535 KEGG:cal:CaO19.58 Uniprot:Q59MB4
Length = 786
Score = 523 (189.2 bits), Expect = 9.1e-49, Sum P(2) = 9.1e-49
Identities = 142/430 (33%), Positives = 225/430 (52%)
Query: 42 SAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPL 101
S P K+ K + VPF+ ++ P+ Y+ + + PF + Q E + +
Sbjct: 158 SGPFKPKLSS-KPHALVPFN-DSLINPEPVYEDSIEIIDPPF---YAQPYE------YEI 206
Query: 102 DNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQY 161
DN D + + +A+ P T V+ V++L+++ +LK E AVDLEH+ Y
Sbjct: 207 DNQPYPDAI---LAKSDAIPPKDWSTTKAIWVDTVEELQKMVQELKKSTEIAVDLEHHDY 263
Query: 162 RSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRD 221
RS+ G+ CLMQIS R +D+++DTL LR + L EVF DP KV HGA DI+WLQRD
Sbjct: 264 RSYYGIVCLMQISNREQDWIIDTLALRDDL-TVLNEVFADPDIVKVFHGAFMDIIWLQRD 322
Query: 222 FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAR 281
G+Y+ ++FDT ASR L R SL YLL + +K+YQ ADWR+RPL ML YAR
Sbjct: 323 LGLYVVSLFDTFHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYAR 382
Query: 282 EDTHYLLYIYDIMKIKLSSMPKESENS-DTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 340
DTH+LL+IYD +K KL K S+ D+ +V KR ++ + S +
Sbjct: 383 SDTHFLLFIYDQLKNKLIDAEKLSQVLYDS--RQVAKRRFEYTKYRPMANTFSNKVTCPV 440
Query: 341 YGLQ-----GAGLNAQQLA-----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK-Q 389
G+ ++ + VV L +WRD++A+ DES Y++PN+ L+ +A +
Sbjct: 441 MAFNPKEPWGSIVSQYNVPHFKRPVVEVLYKWRDLMAKKQDESVRYIMPNQLLVSLANLE 500
Query: 390 LPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA-AN-FEVIAQKLKEERMEVASEE 447
P K+ + + + ++I+ +++ AN ++++ Q K++ SEE
Sbjct: 501 SPVDLNKVLNVSYRISDAVRINAKELANLIEKTLKETEANDWDLVDQWNKQQ-----SEE 555
Query: 448 TEVLVLDTSS 457
+ +D +S
Sbjct: 556 QDDNSIDAAS 565
Score = 46 (21.3 bits), Expect = 9.1e-49, Sum P(2) = 9.1e-49
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 755 KQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVS---AVDQAQKDDGTKELSQGRRRSAFP 811
+ I+ E+ +++ + D ++ P S + K+S A+ K+ EL R+R+ P
Sbjct: 649 EDIDEAEEEEDEQSEEDASESTPQASDEAPKISGQAALFNNDKEINPNELITLRKRNVRP 708
Query: 812 ATGNRS 817
N +
Sbjct: 709 NKKNNN 714
>UNIPROTKB|Q59MB4 [details] [associations]
symbol:RRP6 "Likely nuclear exosome component Rrp6p"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00474 CGD:CAL0000608 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 GO:GO:0035690 SUPFAM:SSF53098
GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176 EMBL:AACQ01000231
RefSeq:XP_710869.1 ProteinModelPortal:Q59MB4 SMR:Q59MB4
STRING:Q59MB4 GeneID:3647535 KEGG:cal:CaO19.58 Uniprot:Q59MB4
Length = 786
Score = 523 (189.2 bits), Expect = 9.1e-49, Sum P(2) = 9.1e-49
Identities = 142/430 (33%), Positives = 225/430 (52%)
Query: 42 SAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPL 101
S P K+ K + VPF+ ++ P+ Y+ + + PF + Q E + +
Sbjct: 158 SGPFKPKLSS-KPHALVPFN-DSLINPEPVYEDSIEIIDPPF---YAQPYE------YEI 206
Query: 102 DNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQY 161
DN D + + +A+ P T V+ V++L+++ +LK E AVDLEH+ Y
Sbjct: 207 DNQPYPDAI---LAKSDAIPPKDWSTTKAIWVDTVEELQKMVQELKKSTEIAVDLEHHDY 263
Query: 162 RSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRD 221
RS+ G+ CLMQIS R +D+++DTL LR + L EVF DP KV HGA DI+WLQRD
Sbjct: 264 RSYYGIVCLMQISNREQDWIIDTLALRDDL-TVLNEVFADPDIVKVFHGAFMDIIWLQRD 322
Query: 222 FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAR 281
G+Y+ ++FDT ASR L R SL YLL + +K+YQ ADWR+RPL ML YAR
Sbjct: 323 LGLYVVSLFDTFHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYAR 382
Query: 282 EDTHYLLYIYDIMKIKLSSMPKESENS-DTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 340
DTH+LL+IYD +K KL K S+ D+ +V KR ++ + S +
Sbjct: 383 SDTHFLLFIYDQLKNKLIDAEKLSQVLYDS--RQVAKRRFEYTKYRPMANTFSNKVTCPV 440
Query: 341 YGLQ-----GAGLNAQQLA-----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK-Q 389
G+ ++ + VV L +WRD++A+ DES Y++PN+ L+ +A +
Sbjct: 441 MAFNPKEPWGSIVSQYNVPHFKRPVVEVLYKWRDLMAKKQDESVRYIMPNQLLVSLANLE 500
Query: 390 LPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA-AN-FEVIAQKLKEERMEVASEE 447
P K+ + + + ++I+ +++ AN ++++ Q K++ SEE
Sbjct: 501 SPVDLNKVLNVSYRISDAVRINAKELANLIEKTLKETEANDWDLVDQWNKQQ-----SEE 555
Query: 448 TEVLVLDTSS 457
+ +D +S
Sbjct: 556 QDDNSIDAAS 565
Score = 46 (21.3 bits), Expect = 9.1e-49, Sum P(2) = 9.1e-49
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 755 KQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVS---AVDQAQKDDGTKELSQGRRRSAFP 811
+ I+ E+ +++ + D ++ P S + K+S A+ K+ EL R+R+ P
Sbjct: 649 EDIDEAEEEEDEQSEEDASESTPQASDEAPKISGQAALFNNDKEINPNELITLRKRNVRP 708
Query: 812 ATGNRS 817
N +
Sbjct: 709 NKKNNN 714
>TIGR_CMR|GSU_0443 [details] [associations]
symbol:GSU_0443 "ribonuclease D, putative" species:243231
"Geobacter sulfurreducens PCA" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 GO:GO:0000166 GO:GO:0003676
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF53098 GO:GO:0008408 Gene3D:1.10.150.80 SUPFAM:SSF47819
KO:K03684 RefSeq:NP_951502.1 ProteinModelPortal:Q74G09
GeneID:2686317 KEGG:gsu:GSU0443 PATRIC:22023634
HOGENOM:HOG000010987 OMA:LRETTFW ProtClustDB:CLSK924403
BioCyc:GSUL243231:GH27-436-MONOMER Uniprot:Q74G09
Length = 381
Score = 244 (91.0 bits), Expect = 7.1e-18, P = 7.1e-18
Identities = 91/318 (28%), Positives = 145/318 (45%)
Query: 131 KLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQ 190
+++ V ++ LA +L S A DLE + + CL+Q + +VD L
Sbjct: 9 EIITTVDGVRRLADRLGSEPIVACDLEADSMHHYQEKVCLIQFAVPGYAAIVDPLAAP-D 67
Query: 191 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLL 250
+ P L +F + +KV HGAD DI L RDFGI + N+FDT A ++L L L
Sbjct: 68 ISP-LAPLFANAAIRKVFHGADYDIRSLHRDFGIEVNNLFDTMIACQLLGEREFGLAAQL 126
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
GV +K+YQ ADW RPL M+ YA +DT L+ +Y + +L + +
Sbjct: 127 RKRFGVELDKQYQRADWSRRPLTVGMIEYAVKDTTLLIELYRQLVAELEEKGRRGWVEEE 186
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
E+ R ++ E+ E +L G + ++ + LAV+ L +RD AR
Sbjct: 187 --CELLSRV-----RVAERG--DEPFFLRFKG--ASRMDGRTLAVLEELLLFRDGRARQF 235
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFE 430
D VL T+ E+A++ P +L+ + RY +L ++ A +
Sbjct: 236 DVPPFKVLGTDTVRELAERRPRLPEELQGITGLTDKVAARYGEGILRAVERGCAVPAQ-Q 294
Query: 431 VIAQKLKEER-MEVASEE 447
+ A +E R ME E+
Sbjct: 295 LPAYPREERRKMERGEED 312
>TIGR_CMR|APH_0137 [details] [associations]
symbol:APH_0137 "putative ribonuclease D" species:212042
"Anaplasma phagocytophilum HZ" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF01612 SMART:SM00474 GO:GO:0000166 GO:GO:0003676
GO:GO:0005622 EMBL:CP000235 GenomeReviews:CP000235_GR
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 eggNOG:COG0349
KO:K03684 HOGENOM:HOG000063479 OMA:FHDCRQD ProtClustDB:CLSK749493
RefSeq:YP_504762.1 ProteinModelPortal:Q2GLI9 STRING:Q2GLI9
GeneID:3930937 KEGG:aph:APH_0137 PATRIC:20948846
BioCyc:APHA212042:GHPM-172-MONOMER Uniprot:Q2GLI9
Length = 381
Score = 200 (75.5 bits), Expect = 8.0e-13, P = 8.0e-13
Identities = 73/294 (24%), Positives = 134/294 (45%)
Query: 138 DLKELAAKL--KSVDEFAVDLEH-NQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPY 194
DL +L + + A+D E + + CL+QI+ + V+D L + + P
Sbjct: 8 DLSRFCTELLRDNPESVAIDTEFLRSFNDYYPKLCLLQIAYENKQCVIDALAEGIDLTP- 66
Query: 195 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHH 252
L+E+F + KV H +D+ L F +FDT A+ + + NS+ Y L+
Sbjct: 67 LQEIFDNTQIFKVFHDCRQDLDALSLLFESLPRPIFDTQIAAMLCEYHENSVGYSKLVEQ 126
Query: 253 FCGVNANK-EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP 311
F GV NK ++ DW RPL + +RYA +D YL +Y I++ L+S + S
Sbjct: 127 FLGVKLNKMPFKRVDWSKRPLTESEVRYALDDVIYLYKLYGILRDILTSKGRLSW----- 181
Query: 312 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG-AGLNAQQLAVVAGLCEWRDVIARAD 370
Y D C + + +S+N + ++ A L Q+ + + EWR+ +AR
Sbjct: 182 ----YMEEMD-C--IVDS--VSDNYTTILESMECYADLTEQEANIARSVVEWRERVARLL 232
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAK--LRRLLKSKHSYIERYMGPVLSIIKNS 422
+ + ++ R ++ I K + LR+ ++ Y++ + I++N+
Sbjct: 233 NINRNIIMNARDVLNITKDFIADGSDSTLRKYVREL--YLQDLPFSLTEIVENN 284
>TIGR_CMR|SPO_2167 [details] [associations]
symbol:SPO_2167 "ribonuclease D" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00474
GO:GO:0005737 GO:GO:0000166 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003676 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0042780 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 RefSeq:YP_167394.1 ProteinModelPortal:Q5LRG1
GeneID:3193200 KEGG:sil:SPO2167 PATRIC:23377681
HOGENOM:HOG000277561 OMA:KSKYLHK ProtClustDB:CLSK864964
Uniprot:Q5LRG1
Length = 385
Score = 191 (72.3 bits), Expect = 8.6e-12, P = 8.6e-12
Identities = 80/273 (29%), Positives = 125/273 (45%)
Query: 141 ELAAKLKSVDEFA---VDLEHNQYRSFLGLTCLMQISTRTED----FVVDTLKLRVQVGP 193
ELAA K+ A VD E + R++ CL+Q++ ED +VD L +++ P
Sbjct: 9 ELAAFCKAAASHAYVTVDTEFLRERTYYSKLCLIQLAYPGEDADSAVLVDPLAEGLELEP 68
Query: 194 YLREVFKDPTKKKVMHGA--DRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
L +F+D + KV H A D +I W+ D G++ +FDT A+ V E+ E L+
Sbjct: 69 -LYTLFRDTSVVKVFHAARQDLEIFWV--DAGVFPEPLFDTQVAAMVCGFGEQVGYETLV 125
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
C +K + DW RPL D YA D +L IY+ + L+ + ++
Sbjct: 126 RKICRQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLAADLAKTGRSHWVAEE 185
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
T +YD+ R E ++ I +G + LAVV L ++R+ A+ +
Sbjct: 186 LRTLTDPATYDI-RP--------EEAWRRIKTRTNSG---KFLAVVRELAQFRESYAQDN 233
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKL--RRLL 401
+ V + LIE+A P T A L RLL
Sbjct: 234 NVPRNRVFKDDALIELASTKPRTHADLGGSRLL 266
>UNIPROTKB|Q9KQL4 [details] [associations]
symbol:rnd "Ribonuclease D" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00474
GO:GO:0005737 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0004525 GO:GO:0042780 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 PIR:G82132 RefSeq:NP_231618.1
ProteinModelPortal:Q9KQL4 DNASU:2613488 GeneID:2613488
KEGG:vch:VC1984 PATRIC:20083002 OMA:LCAWRER ProtClustDB:CLSK874625
Uniprot:Q9KQL4
Length = 381
Score = 189 (71.6 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 71/300 (23%), Positives = 132/300 (44%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ +V DL+ + + D +D E + R+F L+Q+ ++D L
Sbjct: 11 YQIISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVLD- 69
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
++ P++ E+ +D + KV+H D+ Q FG M DT + L ++
Sbjct: 70 EMTPFV-ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAA 128
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ V +K DW RPL D+ L YA D YLL +Y+ KL ++
Sbjct: 129 LVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYE----KLVEQVTQAGWW 184
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
D L E V ++ K E +YL I G L ++LA++ L WR A
Sbjct: 185 DAALQE---SELQVAKRT--KVSNPELAYLDIKGAWQ--LKPKELAILKPLATWRYHEAV 237
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 428
D + +V+ L+ I++ + ++ H+ I R+ +++++K +++ A+
Sbjct: 238 NRDLALNFVIKETDLLTISRLALRSPKRMEEEGVDPHA-IRRHSSKIIAMVKTALETPAD 296
>TIGR_CMR|VC_1984 [details] [associations]
symbol:VC_1984 "ribonuclease D" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00474
GO:GO:0005737 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0004525 GO:GO:0042780 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 PIR:G82132 RefSeq:NP_231618.1
ProteinModelPortal:Q9KQL4 DNASU:2613488 GeneID:2613488
KEGG:vch:VC1984 PATRIC:20083002 OMA:LCAWRER ProtClustDB:CLSK874625
Uniprot:Q9KQL4
Length = 381
Score = 189 (71.6 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 71/300 (23%), Positives = 132/300 (44%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ +V DL+ + + D +D E + R+F L+Q+ ++D L
Sbjct: 11 YQIISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVLD- 69
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
++ P++ E+ +D + KV+H D+ Q FG M DT + L ++
Sbjct: 70 EMTPFV-ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAA 128
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ V +K DW RPL D+ L YA D YLL +Y+ KL ++
Sbjct: 129 LVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYE----KLVEQVTQAGWW 184
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
D L E V ++ K E +YL I G L ++LA++ L WR A
Sbjct: 185 DAALQE---SELQVAKRT--KVSNPELAYLDIKGAWQ--LKPKELAILKPLATWRYHEAV 237
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 428
D + +V+ L+ I++ + ++ H+ I R+ +++++K +++ A+
Sbjct: 238 NRDLALNFVIKETDLLTISRLALRSPKRMEEEGVDPHA-IRRHSSKIIAMVKTALETPAD 296
>TIGR_CMR|ECH_0300 [details] [associations]
symbol:ECH_0300 "putative ribonuclease D" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 eggNOG:COG0349 KO:K03684
RefSeq:YP_507121.1 ProteinModelPortal:Q2GHG2 STRING:Q2GHG2
GeneID:3928062 KEGG:ech:ECH_0300 PATRIC:20576105
HOGENOM:HOG000063479 OMA:FHDCRQD ProtClustDB:CLSK749493
BioCyc:ECHA205920:GJNR-300-MONOMER Uniprot:Q2GHG2
Length = 387
Score = 183 (69.5 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 75/303 (24%), Positives = 141/303 (46%)
Query: 132 LVEEVKDLKELAAKLKSVD-EF-AVDLEHNQYRS-FLGLTCLMQISTRTEDFVVDTLKLR 188
L++ VK+L+ L +L + +F AVD E + S + CL+QI+ E FV+D L
Sbjct: 2 LIDTVKELERLCNQLLVLQPKFIAVDTEFVRSSSEYYPKLCLIQIAYGKEQFVIDVLAKD 61
Query: 189 VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
+ + L +F + + KV H +DI L F +FDT A+ N++ Y
Sbjct: 62 MDLS-VLGHIFYNESIIKVFHDCRQDIDALLTKFPEIPSPIFDTQIAAMFCCCYDNAVGY 120
Query: 249 --LLHHFCGVNANK-EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE- 304
L+ F G++ +K + ++W +RPL + ++YA D YL +Y I+ L K
Sbjct: 121 SKLVEQFLGISLDKLSLKRSNWALRPLSADKIQYALNDVIYLYELYQILYNNLLDAGKLP 180
Query: 305 ---SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCE 361
E ++ L EV DVC I G+ + +++ VV + E
Sbjct: 181 WFLEEMNNIVLQEV--NCNDVC---------------DIPDF-GSDMTKEEIIVVRSVIE 222
Query: 362 WRDVIARADDESTGYVLPNRTLIEIAKQL--PTTAAKLRRLLKSKHSYIERYMGPVLSII 419
WR+ +A+ + + ++L N+ ++ + + + + L + +K ++ + + +L +I
Sbjct: 223 WRERLAKFFNLNREFILKNKVMLSLVRDFIKKSDISTLGKYIKKEYLSCDA-VSDLLQVI 281
Query: 420 KNS 422
N+
Sbjct: 282 DNN 284
>TIGR_CMR|APH_1098 [details] [associations]
symbol:APH_1098 "3''-5'' exonuclease family protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
GO:GO:0003676 GO:GO:0005622 EMBL:CP000235 GenomeReviews:CP000235_GR
SUPFAM:SSF53098 GO:GO:0008408 eggNOG:COG0349 KO:K03684
HOGENOM:HOG000003834 OMA:CTKIASR ProtClustDB:CLSK863722
RefSeq:YP_505646.1 ProteinModelPortal:Q2GJ05 STRING:Q2GJ05
GeneID:3930416 KEGG:aph:APH_1098 PATRIC:20950954
BioCyc:APHA212042:GHPM-1104-MONOMER Uniprot:Q2GJ05
Length = 204
Score = 152 (58.6 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 50/163 (30%), Positives = 74/163 (45%)
Query: 150 DEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG-PYLREVFKDPTKKKVM 208
D AVD E CL+Q+S D +K P LR+V DP K+
Sbjct: 18 DMVAVDTETMGLVCRRDRVCLVQLSAGNGD--AHLVKFDGDYSAPNLRKVISDPGVLKIF 75
Query: 209 HGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN--SLEYLLHHFCGVNANKEYQNAD 266
H A D+ ++ FG++ + T ASR+++ N L+ L + GV NK Q++D
Sbjct: 76 HFARFDVAAIRHGFGMWATPCYCTKIASRLVRTYTNHHGLKDLCYELLGVKINKAQQSSD 135
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
W L E L YA D ++Y++ I K KL M + E +
Sbjct: 136 WGREVLTAEQLSYAAAD---VIYLHAIKK-KLDMMLEREEKQE 174
>TIGR_CMR|CPS_3518 [details] [associations]
symbol:CPS_3518 "ribonuclease D" species:167879 "Colwellia
psychrerythraea 34H" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00341
SMART:SM00474 GO:GO:0005737 GO:GO:0000166 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 eggNOG:COG0349
GO:GO:0042780 HOGENOM:HOG000277560 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 RefSeq:YP_270192.1 ProteinModelPortal:Q47YC8
STRING:Q47YC8 GeneID:3519149 KEGG:cps:CPS_3518 PATRIC:21469973
OMA:SRTGTEI BioCyc:CPSY167879:GI48-3546-MONOMER Uniprot:Q47YC8
Length = 379
Score = 159 (61.0 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 71/316 (22%), Positives = 136/316 (43%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++L+E+ K L L +L A+D E + R+ L+Q+ + ++D L +
Sbjct: 3 YQLIEDQKSLNNLCEQLVKAKVLAIDTEFVRTRTLYAKLGLLQVCDGEQLALIDPLAID- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDI-VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
+ P+ + + KV+H D+ V+L N+ D+ Q SL Y
Sbjct: 62 DLAPFWA-LLTNENITKVLHACSEDLEVFLTAG-NCKPVNLIDS-QIMMSFLGHGLSLGY 118
Query: 249 --LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++ HF + +K DW RPL ++ L YA D +L IY KL + + ++
Sbjct: 119 AAMVKHFTDIELDKSESRTDWTKRPLTEKQLDYASADVDHLFDIYP----KL--LAEITQ 172
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
++ +S + ++ ++ YL+I LN +QL ++ L WR
Sbjct: 173 AGFLAYAQIETQSM-IDKKF--TPIIESEMYLNIK--MNWRLNPKQLNLLKYLASWRFQQ 227
Query: 367 ARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 426
A+ D G+V + TL+ +A+ P + + L + + R+ G + + + + A
Sbjct: 228 AKKRDLPLGFVAKDHTLMALAQSNPESVNAMLTL-EGVETLDIRHKGKAMLAVLSQAEQA 286
Query: 427 ANFEVIAQKLKEERME 442
EV + K +R++
Sbjct: 287 ---EVSSYPDKIDRLD 299
>TIGR_CMR|NSE_0529 [details] [associations]
symbol:NSE_0529 "3'-5' exonuclease family protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
GO:GO:0003676 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
EMBL:CP000237 GenomeReviews:CP000237_GR eggNOG:COG0349 KO:K03684
RefSeq:YP_506413.1 ProteinModelPortal:Q2GDN3 STRING:Q2GDN3
GeneID:3931905 KEGG:nse:NSE_0529 PATRIC:22681107
HOGENOM:HOG000003834 OMA:CTKIASR ProtClustDB:CLSK863722
BioCyc:NSEN222891:GHFU-549-MONOMER Uniprot:Q2GDN3
Length = 206
Score = 141 (54.7 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 45/160 (28%), Positives = 70/160 (43%)
Query: 141 ELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFK 200
++ A D A+D E + CL+Q+ST + P L+ +
Sbjct: 10 DVPADFAPSDAIAIDTESMGLVNRRDRLCLVQLSTGDGTAHLVRFNGTDYSAPRLKSLLV 69
Query: 201 DPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL--ERNSLEYLLHHFCGVNA 258
DP K+ H A DI L+ G+ N + T ASR+++ + +SL+ L GV
Sbjct: 70 DPAVIKIFHFARFDIAILRHYLGVLTENCYCTKIASRLVRTYTDHHSLKELCLDLLGVRL 129
Query: 259 NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298
NK Q++DW L E + YA D YL I + + + L
Sbjct: 130 NKGKQSSDWGSTSLTREQMSYAASDVLYLHAIKEALDVML 169
>UNIPROTKB|P09155 [details] [associations]
symbol:rnd "RNase D" species:83333 "Escherichia coli K-12"
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0033890 "ribonuclease D activity" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA;IMP] [GO:0004540
"ribonuclease activity" evidence=IMP] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00341
SMART:SM00474 GO:GO:0005737 GO:GO:0000166 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003676
GO:GO:0008033 SUPFAM:SSF53098 GO:GO:0004540 GO:GO:0008408
SUPFAM:SSF47819 eggNOG:COG0349 EMBL:X70994 EMBL:X07055 PIR:S01223
RefSeq:NP_416318.1 RefSeq:YP_490065.1 PDB:1YT3 PDBsum:1YT3
ProteinModelPortal:P09155 SMR:P09155 DIP:DIP-10726N IntAct:P09155
MINT:MINT-1309170 PRIDE:P09155 DNASU:946328
EnsemblBacteria:EBESCT00000002543 EnsemblBacteria:EBESCT00000015703
GeneID:12931344 GeneID:946328 KEGG:ecj:Y75_p1779 KEGG:eco:b1804
PATRIC:32118925 EchoBASE:EB0851 EcoGene:EG10858
HOGENOM:HOG000277560 KO:K03684 OMA:TKYLHAG ProtClustDB:PRK10829
BioCyc:EcoCyc:EG10858-MONOMER BioCyc:ECOL316407:JW1793-MONOMER
BioCyc:MetaCyc:EG10858-MONOMER EvolutionaryTrace:P09155
Genevestigator:P09155 GO:GO:0033890 TIGRFAMs:TIGR01388
Uniprot:P09155
Length = 375
Score = 147 (56.8 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 63/275 (22%), Positives = 116/275 (42%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ L L +++ A+D E + R++ L+Q+ ++D L +
Sbjct: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-T 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEY 248
P L+ + +DP+ K +H D+ FG + DT + +
Sbjct: 62 DWSP-LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
++ + GV +K DW RPL + YA D YLL I K+ + E+E S
Sbjct: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMV-----ETEAS 173
Query: 309 DTPLTEVYKRSYDVCR--QLYEKELLS-ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
+ D CR Q+ +E+++ E+++ I L +QLA + L +WR
Sbjct: 174 GW-----LPAALDECRLMQMRRQEVVAPEDAWRDI--TNAWQLRTRQLACLQLLADWRLR 226
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
AR D + +V+ L +A+ +P + +L L
Sbjct: 227 KARERDLAVNFVVREEHLWSVARYMPGSLGELDSL 261
>UNIPROTKB|O07183 [details] [associations]
symbol:MT2755 "CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN"
species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 Pfam:PF00570 Pfam:PF01612
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005886
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842580 GO:GO:0000166 GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 KO:K03684
EMBL:AL123456 PIR:D70528 RefSeq:NP_217197.1 RefSeq:NP_337256.1
RefSeq:YP_006516125.1 SMR:O07183 EnsemblBacteria:EBMYCT00000002560
EnsemblBacteria:EBMYCT00000070259 GeneID:13319408 GeneID:887708
GeneID:925540 KEGG:mtc:MT2755 KEGG:mtu:Rv2681 KEGG:mtv:RVBD_2681
PATRIC:18127796 TubercuList:Rv2681 HOGENOM:HOG000243390 OMA:ADWSTRP
ProtClustDB:CLSK792001 Uniprot:O07183
Length = 438
Score = 145 (56.1 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 69/259 (26%), Positives = 116/259 (44%)
Query: 141 ELAAKLKSVDE----FAVDLEHNQYRSFLGLTCLMQISTRTE--DFVVDTLK-----LRV 189
E+AA + +D FAVD E + G L+QI R E ++D + L V
Sbjct: 39 EIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIR-RAEAGTVLIDPVSHGGDPLTV 97
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
+ P + EV T + ++H AD+D+ L + G+ ++DT A R+ +R +L +
Sbjct: 98 -LAP-VAEVLS--TNEWILHSADQDLPCLA-EVGMRPPALYDTELAGRLAGFDRVNLAAM 152
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ G+ K + ADW RPLP L YA D L+ + + +S + E +D
Sbjct: 153 VERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIEL----RAAISRVLAEQGKTD 208
Query: 310 TPLTEV-YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
E + RS++ R ++ + G+ + + LA V L RD IA+
Sbjct: 209 WAAQEFEHLRSFE-SRP--PPAAARQDRWRRTSGIHKVH-DRRGLAAVRELWTARDRIAQ 264
Query: 369 ADDESTGYVLPNRTLIEIA 387
D + +LP+ +I+ A
Sbjct: 265 RRDIAPRRILPDSAIIDAA 283
>TIGR_CMR|SO_2580 [details] [associations]
symbol:SO_2580 "ribonuclease D" species:211586 "Shewanella
oneidensis MR-1" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00341
SMART:SM00474 GO:GO:0005737 GO:GO:0000166 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0042780
HOGENOM:HOG000277560 KO:K03684 OMA:TKYLHAG GO:GO:0033890
TIGRFAMs:TIGR01388 RefSeq:NP_718166.1 ProteinModelPortal:Q8EE10
GeneID:1170282 KEGG:son:SO_2580 PATRIC:23524787
ProtClustDB:CLSK906783 Uniprot:Q8EE10
Length = 367
Score = 136 (52.9 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 67/276 (24%), Positives = 114/276 (41%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
F+ V + L L A+ + +D E + R++ L+Q ++D + L
Sbjct: 2 FQYVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPIALP- 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
+ + + +P K++H D+ +FD+ A+ + + + L Y
Sbjct: 61 DLSAFWA-LLDNPNIIKLVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLCGMG-HGLGYA 118
Query: 250 -LHHFC-GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
L C G +K DW RPL D L YA D YL +Y + KL + +
Sbjct: 119 KLVETCLGEVIDKGESRTDWMRRPLTDAQLSYAANDVLYLYQLYPQLAEKLQTQDR---- 174
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLS---ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L +Y+ ++ E L S E +YL + L QLA + L +WR
Sbjct: 175 ----LDWLYEEG----ERMTEGRLASPDAETAYLKVKN--AFQLTEHQLAYLKVLAKWRL 224
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
A A D + G+V+ + LI +AK+ P + + L +L
Sbjct: 225 EKALARDLALGFVIKDHGLIALAKKQPKSMSDLLKL 260
>TIGR_CMR|SPO_0083 [details] [associations]
symbol:SPO_0083 "exonuclease, putative" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=ISS] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISS] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 KO:K03684 HOGENOM:HOG000003834
OMA:CTKIASR ProtClustDB:CLSK863722 RefSeq:YP_165357.1
ProteinModelPortal:Q5LWM8 GeneID:3193828 KEGG:sil:SPO0083
PATRIC:23373403 Uniprot:Q5LWM8
Length = 204
Score = 121 (47.7 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 36/137 (26%), Positives = 61/137 (44%)
Query: 153 AVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGAD 212
A+D E C++Q+S + + ++ P L + ++P K+ H
Sbjct: 21 AIDCETMGLNPHRDRLCVIQMSGGDGNTHIVQVEKGQTAAPNLCAMLENPEVLKLFHFGR 80
Query: 213 RDIVWLQRDFGIYLCNMFDTGQASRVLKL--ERNSLEYLLHHFCGVNANKEYQNADWRVR 270
DI L FG ++ T ASR+++ +R+ L+ L GV+ +K+ Q +DW
Sbjct: 81 FDIAALYHAFGALTAPVYCTKIASRLVRTYTDRHGLKNLCQELLGVDISKQQQMSDWGAE 140
Query: 271 PLPDEMLRYAREDTHYL 287
L + L YA D YL
Sbjct: 141 TLSEAQLDYAASDVLYL 157
>TIGR_CMR|ECH_1011 [details] [associations]
symbol:ECH_1011 "3'-5' exonuclease family protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 eggNOG:COG0349 KO:K03684
HOGENOM:HOG000003834 OMA:CTKIASR ProtClustDB:CLSK863722
RefSeq:YP_507797.1 ProteinModelPortal:Q2GFI6 STRING:Q2GFI6
GeneID:3927400 KEGG:ech:ECH_1011 PATRIC:20577396
BioCyc:ECHA205920:GJNR-1014-MONOMER Uniprot:Q2GFI6
Length = 204
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 48/170 (28%), Positives = 75/170 (44%)
Query: 141 ELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQI-STRTEDFVVDTLKLRVQVGPYLREVF 199
+L LK + AVD E C++Q+ + E +V L Q P L V
Sbjct: 9 DLPNGLKFENTVAVDTETMGLVCRRDKLCVVQLCDSNGETHLVKFLG-SYQA-PNLVSVL 66
Query: 200 KDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL--ERNSLEYLLHHFCGVN 257
D + K+ H A DI ++ G++ + T AS++++ + + L+ L + V
Sbjct: 67 SDSSITKIFHFARFDIAVIRYYLGVWATPCYCTKIASKLVRTYTDHHGLKELCYELLNVK 126
Query: 258 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
NK Q++DW L E L YA D YL +K KL +M + EN
Sbjct: 127 LNKMQQSSDWGKETLTSEQLNYAASDVIYL----HALKNKLDAM-LQREN 171
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.131 0.369 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 821 793 0.00096 121 3 11 23 0.46 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 36
No. of states in DFA: 619 (66 KB)
Total size of DFA: 364 KB (2181 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 86.20u 0.15s 86.35t Elapsed: 00:00:05
Total cpu time: 86.21u 0.15s 86.36t Elapsed: 00:00:05
Start: Tue May 21 05:07:25 2013 End: Tue May 21 05:07:30 2013