BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003416
(821 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359481017|ref|XP_002269553.2| PREDICTED: exosome component 10-like [Vitis vinifera]
Length = 931
Score = 863 bits (2230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/856 (55%), Positives = 593/856 (69%), Gaps = 63/856 (7%)
Query: 1 MDVSFDEFSKARGENGEGDGNEG-GFQLVYGKNKKKG-------DIVGGSAPASVKVKDR 52
D + +EF R + + + G GFQLV G+ KK G V + ++ VKD+
Sbjct: 104 FDAAAEEFRGLRLKQEQSRIDSGDGFQLVCGRKKKWGQSEMGQDSTVVAHSNVALAVKDK 163
Query: 53 KE-----KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVL 107
+ + +VPFH+PTI +PQ+E+ I+VNN+NQPFQHVWLQ+S+D RFIHPL+ LS+L
Sbjct: 164 RTVGPAARPRVPFHIPTIPRPQDEFNILVNNSNQPFQHVWLQRSDDGLRFIHPLEKLSLL 223
Query: 108 DFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGL 167
DFVDK+IGD+ V PPS+E TPFKLVEEV+DLKELAAKL V+EFAVDLEHNQYRSF GL
Sbjct: 224 DFVDKNIGDLMPVMPPSIEDTPFKLVEEVRDLKELAAKLCCVNEFAVDLEHNQYRSFQGL 283
Query: 168 TCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLC 227
TCLMQISTRTEDFVVDTLKLR+ VGPYLREVFKDPTKKKVMHGADRDI+WLQRDFGIY+C
Sbjct: 284 TCLMQISTRTEDFVVDTLKLRIHVGPYLREVFKDPTKKKVMHGADRDIIWLQRDFGIYIC 343
Query: 228 NMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL 287
NMFDTGQASRVLKLERNSLE+LLHH+CGV ANKEYQN DWR+RPLP EMLRYAREDTHYL
Sbjct: 344 NMFDTGQASRVLKLERNSLEHLLHHYCGVTANKEYQNGDWRLRPLPHEMLRYAREDTHYL 403
Query: 288 LYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG 347
L+IYD+M+ +L SM E ENS+ L EVYKRS+D+C QLYEKELL+++SYL+ YGLQGA
Sbjct: 404 LHIYDLMRTQLLSMA-ELENSNALLLEVYKRSFDICMQLYEKELLTDSSYLYTYGLQGAH 462
Query: 348 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 407
NAQQLA+VAGL EWRDV+ARA+DESTGY+LPN+TL+EIAKQ+P T +KLRRLLKSKH Y
Sbjct: 463 FNAQQLAIVAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTTSKLRRLLKSKHPY 522
Query: 408 IERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-------EVLVLDTSSNLK 460
+ER +GPV+SII++S+ NAA FE AQ LKE + ASE+ E L ++ ++++
Sbjct: 523 VERNLGPVVSIIRHSILNAAAFEAAAQHLKEGHIGTASEDNTVDTTGFEALPSESPTSIR 582
Query: 461 IPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAH-PGEAIA 519
+ ES D + + G + K+ + GS++ G G + PGE+
Sbjct: 583 AADARAESFDTDNVINGGKTDKLQTFVSAKEYHMEPGSTIDGPGSKGQGGSSEPPGESKE 642
Query: 520 SENKEATHI-----STLSSSGQSRDLN--ACKSPSPRVTEAAVQALKKPNRGFGALLGN- 571
++++ + I T +SSGQSRD + S S +VTE VQ LKKPNR FG+LLGN
Sbjct: 643 VKDEKDSFIPEVARETPASSGQSRDTDTHTSVSQSEKVTEVTVQLLKKPNRAFGSLLGNS 702
Query: 572 -PKRKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSF 630
KRK + + K KE +KLEQIKSSVNLPFHS S N+ +L
Sbjct: 703 ASKRKLNSDPKGKEDIKLEQIKSSVNLPFHSF--------------SGGNREEL------ 742
Query: 631 GSGEQTKPIIEESNRVTVVSQSEEP--APAARPDTEDIITLEDDIDEEEQNLGNLETASA 688
+K EE +V SEEP PA+R D E+II E++ +E GN A+
Sbjct: 743 -----SKLDTEEHTKVLETQGSEEPLAVPASRNDLEEIIMFEENSGSDESVNGNSGAANE 797
Query: 689 P---GEDGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQL 745
ED GS LEM + +E MSL+DLS+ FQ+C S N RK + E+S+E +G LQ+
Sbjct: 798 QLEGKEDNPKGSGLEMDEGNEPMSLTDLSSGFQKCSQSLNETRKARRVEKSQESNGLLQV 857
Query: 746 KPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGR 805
KPFD+EAARKQ+ FGED E+S G +G + V+S KK+ + Q +D T + +QGR
Sbjct: 858 KPFDYEAARKQVRFGEDP-EESRGKEG-RGGLVDSVSKKRSLGKGRVQGEDETGDYAQGR 915
Query: 806 RRSAFPATGNRSATFR 821
RR AFPATGNRS TFR
Sbjct: 916 RRQAFPATGNRSVTFR 931
>gi|296085897|emb|CBI31221.3| unnamed protein product [Vitis vinifera]
Length = 901
Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/789 (57%), Positives = 564/789 (71%), Gaps = 50/789 (6%)
Query: 55 KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDI 114
+ +VPFH+PTI +PQ+E+ I+VNN+NQPFQHVWLQ+S+D RFIHPL+ LS+LDFVDK+I
Sbjct: 141 RPRVPFHIPTIPRPQDEFNILVNNSNQPFQHVWLQRSDDGLRFIHPLEKLSLLDFVDKNI 200
Query: 115 GDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIS 174
GD+ V PPS+E TPFKLVEEV+DLKELAAKL V+EFAVDLEHNQYRSF GLTCLMQIS
Sbjct: 201 GDLMPVMPPSIEDTPFKLVEEVRDLKELAAKLCCVNEFAVDLEHNQYRSFQGLTCLMQIS 260
Query: 175 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
TRTEDFVVDTLKLR+ VGPYLREVFKDPTKKKVMHGADRDI+WLQRDFGIY+CNMFDTGQ
Sbjct: 261 TRTEDFVVDTLKLRIHVGPYLREVFKDPTKKKVMHGADRDIIWLQRDFGIYICNMFDTGQ 320
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
ASRVLKLERNSLE+LLHH+CGV ANKEYQN DWR+RPLP EMLRYAREDTHYLL+IYD+M
Sbjct: 321 ASRVLKLERNSLEHLLHHYCGVTANKEYQNGDWRLRPLPHEMLRYAREDTHYLLHIYDLM 380
Query: 295 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 354
+ +L SM E ENS+ L EVYKRS+D+C QLYEKELL+++SYL+ YGLQGA NAQQLA
Sbjct: 381 RTQLLSM-AELENSNALLLEVYKRSFDICMQLYEKELLTDSSYLYTYGLQGAHFNAQQLA 439
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 414
+VAGL EWRDV+ARA+DESTGY+LPN+TL+EIAKQ+P T +KLRRLLKSKH Y+ER +GP
Sbjct: 440 IVAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTTSKLRRLLKSKHPYVERNLGP 499
Query: 415 VLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-------EVLVLDTSSNLKIPNVGRE 467
V+SII++S+ NAA FE AQ LKE + ASE+ E L ++ ++++ + E
Sbjct: 500 VVSIIRHSILNAAAFEAAAQHLKEGHIGTASEDNTVDTTGFEALPSESPTSIRAADARAE 559
Query: 468 SVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAH-PGEAIASENKEAT 526
S D + + G + K+ + GS++ G G + PGE+ ++++ +
Sbjct: 560 SFDTDNVINGGKTDKLQTFVSAKEYHMEPGSTIDGPGSKGQGGSSEPPGESKEVKDEKDS 619
Query: 527 HI-----STLSSSGQSRDLN--ACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRKFD 577
I T +SSGQSRD + S S +VTE VQ LKKPNR FG+LLGN KRK +
Sbjct: 620 FIPEVARETPASSGQSRDTDTHTSVSQSEKVTEVTVQLLKKPNRAFGSLLGNSASKRKLN 679
Query: 578 GEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTK 637
+ K KE +KLEQIKSSVNLPFHS S N+ +L +K
Sbjct: 680 SDPKGKEDIKLEQIKSSVNLPFHSF--------------SGGNREEL-----------SK 714
Query: 638 PIIEESNRVTVVSQSEEP--APAARPDTEDIITLEDDIDEEEQNLGNLETASAP---GED 692
EE +V SEEP PA+R D E+II E++ +E GN A+ ED
Sbjct: 715 LDTEEHTKVLETQGSEEPLAVPASRNDLEEIIMFEENSGSDESVNGNSGAANEQLEGKED 774
Query: 693 GSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEA 752
GS LEM + +E MSL+DLS+ FQ+C S N RK + E+S+E +G LQ+KPFD+EA
Sbjct: 775 NPKGSGLEMDEGNEPMSLTDLSSGFQKCSQSLNETRKARRVEKSQESNGLLQVKPFDYEA 834
Query: 753 ARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPA 812
ARKQ+ FGED E+S G +G + V+S KK+ + Q +D T + +QGRRR AFPA
Sbjct: 835 ARKQVRFGEDP-EESRGKEG-RGGLVDSVSKKRSLGKGRVQGEDETGDYAQGRRRQAFPA 892
Query: 813 TGNRSATFR 821
TGNRS TFR
Sbjct: 893 TGNRSVTFR 901
>gi|449462768|ref|XP_004149112.1| PREDICTED: exosome component 10-like [Cucumis sativus]
Length = 936
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/869 (54%), Positives = 577/869 (66%), Gaps = 84/869 (9%)
Query: 1 MDVSFDEFSKARGENGEGDGN--------EGGFQLVYGKNKK----KGDIVGGSAPASVK 48
DVS DEF K R E E G + GFQLV GK KK + ++ S +SVK
Sbjct: 104 FDVSLDEFQKIRKEEEEESGRALALTADPDDGFQLVCGKKKKTPTHEDEMHDSSFESSVK 163
Query: 49 V--KDRKE---KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDN 103
V KDRK K KVPFH+PTI +PQ+E+ I+VNN+NQPF+HVWLQ+SED RF+HPL+
Sbjct: 164 VATKDRKTLGVKPKVPFHIPTIRRPQDEFNILVNNSNQPFEHVWLQRSEDGIRFVHPLEK 223
Query: 104 LSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRS 163
LSVLDFVDK D + + PPSL+ TPFK +EEV DLKELAAKL+ V+EFAVDLEHNQYRS
Sbjct: 224 LSVLDFVDKISEDFQPIYPPSLDCTPFKFIEEVNDLKELAAKLRGVNEFAVDLEHNQYRS 283
Query: 164 FLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFG 223
F GLTCLMQISTRTED+VVDTLKLR+ VGPYLREVFKDP+KKKV+HGADRD+VWLQRDFG
Sbjct: 284 FQGLTCLMQISTRTEDYVVDTLKLRIHVGPYLREVFKDPSKKKVLHGADRDVVWLQRDFG 343
Query: 224 IYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARED 283
IY+CN+FDTGQASRVLKLERNSLEYLLHHFCGV ANKEYQNADWR+RPLP+EM+RYARED
Sbjct: 344 IYICNLFDTGQASRVLKLERNSLEYLLHHFCGVAANKEYQNADWRLRPLPEEMVRYARED 403
Query: 284 THYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGL 343
THYLLYIYD+M++KL+SMP+ESE SD PL EVYKRS+DVC LYEKELL+E+SYL++YGL
Sbjct: 404 THYLLYIYDLMRMKLASMPRESEESDLPLVEVYKRSHDVCMHLYEKELLTESSYLYVYGL 463
Query: 344 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 403
QG+G +AQQLAV AGL EWRDV+ARA+DESTGY+LPN+TL+EIAKQ+P T KLRRLLKS
Sbjct: 464 QGSGFDAQQLAVAAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTVNKLRRLLKS 523
Query: 404 KHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-------EVLVLDTS 456
KH YIER + +++II++SM N+ FE AQ+LKE R E ASEE E + DT
Sbjct: 524 KHPYIERNLASIVTIIRHSMLNSCAFEEAAQRLKEVRAEAASEENASANEHQETNIPDTI 583
Query: 457 SNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGE 516
N+K V D V + P S VA L+R G F PG+
Sbjct: 584 LNMKNSAVDNTPSDRVCS-------------------PSSQSKVAPLER-GYRPFV-PGK 622
Query: 517 AIASEN------KEATHISTL--SSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGAL 568
+ ++ + HIS + ++S S+ N K P VT + KK NRG G+L
Sbjct: 623 CVKVDHSLHPVLNGSRHISPVGPTTSEPSKHSNGDKYPVAHVTGVNISLQKKTNRGLGSL 682
Query: 569 LGN--PKRKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLK----PVDVMKSEPNKP 622
LGN PKRK D +KKDKE KL++I+SSV LPFHS EQLK P V +
Sbjct: 683 LGNSAPKRKLDIDKKDKEESKLDKIRSSVTLPFHSFLGTSEQLKSVAEPTTVTALKTQNS 742
Query: 623 DLPFPSSFGSGEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGN 682
+LP S S P + P P P T++II LEDD D+ ++
Sbjct: 743 ELPAAESAKSSNVEPPAV--------------PVPKPFP-TDEIIMLEDDSDDNVEDEDE 787
Query: 683 L---------ETASAPGEDG-SAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGK 732
E P G SA S LE+ DE MSLS+LS+SFQ+C +S G+
Sbjct: 788 DEDEELRAVDEATGEPKLKGLSASSPLEIDDDDEPMSLSELSSSFQKCLNSNEKAMNVGE 847
Query: 733 PERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQA 792
+ S FLQ+KPFD+EAARK++ FGED +E + K + K +D+
Sbjct: 848 TDNPGNQSDFLQIKPFDYEAARKEVVFGEDLEEDLEPENDKDPKASKNAGAKLDLGLDRV 907
Query: 793 QKDDGTKELSQGRRRSAFPATGNRSATFR 821
QK+ GT EL QG+RR AFPATGNRSATFR
Sbjct: 908 QKNSGTVELPQGKRRHAFPATGNRSATFR 936
>gi|356565747|ref|XP_003551099.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 889
Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/848 (55%), Positives = 574/848 (67%), Gaps = 91/848 (10%)
Query: 1 MDVSFDEFSKARGENGEGDG------NEGGFQLVYGKNKKK----------GDIVGGSAP 44
D S DEF K R E E E GFQLV GK KK G V AP
Sbjct: 106 FDASVDEFRKVRQEEEETGRPAMHPMEEDGFQLVTGKKKKGGKGNVTPAATGSEVAAVAP 165
Query: 45 ASVKV--KDRKE---KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIH 99
V V KD+K KSKVPFH+PTI +PQ+EY IVVNNAN PF+HVWLQ+S+D FIH
Sbjct: 166 PGVTVATKDKKTMGPKSKVPFHIPTIRRPQDEYNIVVNNANMPFEHVWLQRSDDGLSFIH 225
Query: 100 PLDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHN 159
PL+ LSVL+FVD ++GDV VKPPS+E TPFKLVEEVKDLKELAAKL+SV+EFAVDLEHN
Sbjct: 226 PLEKLSVLNFVDTNLGDVVPVKPPSIESTPFKLVEEVKDLKELAAKLRSVNEFAVDLEHN 285
Query: 160 QYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQ 219
QYRSF GLTCLMQISTRTEDF+VDTLKLR+ +GPYLRE+FKDP K+KVMHGADRDI WLQ
Sbjct: 286 QYRSFQGLTCLMQISTRTEDFIVDTLKLRIHIGPYLREIFKDPAKRKVMHGADRDIAWLQ 345
Query: 220 RDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRY 279
RDFGIY+CN+FDT QAS++L LERNSLE++LHHFC V ANKEYQNADWR+RPLPDEM+RY
Sbjct: 346 RDFGIYICNLFDTHQASKLLNLERNSLEHILHHFCEVTANKEYQNADWRLRPLPDEMIRY 405
Query: 280 AREDTHYLLYIYDIMKIKLSSM---PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS 336
AREDTHYLLYIYD+M+IKL ++ + SE+SDTPL EVYKRSYDVC QLYEKELL+ENS
Sbjct: 406 AREDTHYLLYIYDLMRIKLFALSKESESSESSDTPLVEVYKRSYDVCIQLYEKELLTENS 465
Query: 337 YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 396
YLHIYGLQGAG NAQQLA+V+GLCEWRD++ARA+DESTGYVLPN++++EIAKQ+P T +K
Sbjct: 466 YLHIYGLQGAGFNAQQLAIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMPLTTSK 525
Query: 397 LRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTS 456
LRRL+KSKH Y+E + V+SII++S+QNAA+FE AQ+LKE + AS+ V T
Sbjct: 526 LRRLVKSKHPYVEHNLDTVVSIIRHSIQNAASFEEAAQQLKEAQAVTASDVVPV----TD 581
Query: 457 SNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGE 516
P+ R S + T++P L EPPK ++AE
Sbjct: 582 GTEDPPSHTRHSKESSQHQ-ATSVPIKIKSNSLIFEPPKDSLTIAE-------------- 626
Query: 517 AIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKR 574
Q+RD N + + AAVQ LKKP FGALLG+ KR
Sbjct: 627 -------------------QNRDANVGALSTAKGNGAAVQVLKKPTGAFGALLGSSASKR 667
Query: 575 KFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGE 634
K G K KE +KLEQI+SSV+LPFHS E KSEP + ++P +S S E
Sbjct: 668 KL-GPGKGKEEIKLEQIRSSVSLPFHSFLGSSE--------KSEPTE-EIPSVASEMS-E 716
Query: 635 QTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGS 694
KP+ + VVS S ++II LE D ++ NLE ++ E S
Sbjct: 717 PQKPVSD------VVSASP---------VDEIIMLESDTGAKDMEQNNLENSNEHREKDS 761
Query: 695 AGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAAR 754
S +DE +SLS+LS++ ++CFHS + N K +P+++E+PSG +QLKPFD+EAAR
Sbjct: 762 VVSTSGKEDEDEPVSLSELSSNLKKCFHSNDQNNKIRQPKKTEQPSGLVQLKPFDYEAAR 821
Query: 755 KQIEFGEDAKEKSA-GVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPAT 813
K ++FGE K S+ G DG+ +SG KK+ S Q Q D +K+L QGRRR AFPA+
Sbjct: 822 KHVKFGEHKKHASSKGSDGHMEVVEDSGSKKQRSTTGQGQASDLSKQLPQGRRRQAFPAS 881
Query: 814 GNRSATFR 821
GNRS+TFR
Sbjct: 882 GNRSSTFR 889
>gi|449522510|ref|XP_004168269.1| PREDICTED: exosome component 10-like [Cucumis sativus]
Length = 935
Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/869 (54%), Positives = 577/869 (66%), Gaps = 85/869 (9%)
Query: 1 MDVSFDEFSKARGENGEGDGN--------EGGFQLVYGKNKK----KGDIVGGSAPASVK 48
DVS DEF K R E E G + GFQLV GK KK + ++ S +SVK
Sbjct: 104 FDVSLDEFQKIRKEEEEESGRALALTADPDDGFQLVCGKKKKTPTHEDEMHDSSFESSVK 163
Query: 49 V--KDRKE---KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDN 103
V KDRK K KVPFH+PTI +PQ+E+ I+VNN+NQPF+HVWLQ+SED RF+HPL+
Sbjct: 164 VATKDRKTLGVKPKVPFHIPTIRRPQDEFNILVNNSNQPFEHVWLQRSEDGIRFVHPLEK 223
Query: 104 LSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRS 163
LSVLDFVDK D + + PPSL+ TPFK +EEV DLKELAAKL+ V+EFAVDLEHNQYRS
Sbjct: 224 LSVLDFVDKISEDFQPIYPPSLDCTPFKFIEEVNDLKELAAKLRGVNEFAVDLEHNQYRS 283
Query: 164 FLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFG 223
F GLTCLMQISTRTED+VVDTLKLR+ VGPYLREVFKDP+KKKV+HGADRD+VWLQRDFG
Sbjct: 284 FQGLTCLMQISTRTEDYVVDTLKLRIHVGPYLREVFKDPSKKKVLHGADRDVVWLQRDFG 343
Query: 224 IYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARED 283
IY+CN+FDTGQASRVLKLERNSLEYLLHHFCGV ANKEYQNADWR+RPLP+EM+RYARED
Sbjct: 344 IYICNLFDTGQASRVLKLERNSLEYLLHHFCGVAANKEYQNADWRLRPLPEEMVRYARED 403
Query: 284 THYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGL 343
THYLLYIYD+M++KL+SMP+ESE SD PL EVYKRS+DVC LYEKELL+E+SYL++YGL
Sbjct: 404 THYLLYIYDLMRMKLASMPRESEESDLPLVEVYKRSHDVCMHLYEKELLTESSYLYVYGL 463
Query: 344 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 403
QG+G +AQQLAV AGL EWRDV+ARA+DESTGY+LPN+TL+EIAKQ+P T KLRRLLKS
Sbjct: 464 QGSGFDAQQLAVAAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTVNKLRRLLKS 523
Query: 404 KHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-------EVLVLDTS 456
KH YIER + +++II++SM N+ FE AQ+LKE R E ASEE E + DT
Sbjct: 524 KHPYIERNLASIVTIIRHSMLNSCAFEEAAQRLKEVRAEAASEENASANEHQETNIPDTI 583
Query: 457 SNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGE 516
N+K V D V + P S VA L+R G F PG+
Sbjct: 584 LNMKNSAVDNTPSDRVCS-------------------PSSQSKVAPLER-GYRPFV-PGK 622
Query: 517 AIASEN------KEATHISTL--SSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGAL 568
+ ++ + HIS + ++S S+ N K P VT + KK NRG G+L
Sbjct: 623 CVKVDHSLHPVLNGSRHISPVGPTTSEPSKHSNGDKYPVAHVTGVNISLQKKTNRGLGSL 682
Query: 569 LGN--PKRKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLK----PVDVMKSEPNKP 622
LGN PKRK D +KKDKE KL++I+SSV LPFHS EQLK P V +
Sbjct: 683 LGNSAPKRKLDIDKKDKEESKLDKIRSSVTLPFHSFLGTSEQLKSVAEPTTVTALKTQNS 742
Query: 623 DLPFPSSFGSGEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGN 682
+LP S S P + P P P T++II LEDD D+ ++
Sbjct: 743 ELPAAESAKSSNVEPPAV--------------PVPKPFP-TDEIIMLEDDSDDNVEDEDE 787
Query: 683 L---------ETASAPGEDG-SAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGK 732
E P G SA S LE+ DE MSLS+LS+SFQ+C +S G+
Sbjct: 788 DEDEELRAVDEATGEPKLKGLSASSPLEIDDDDEPMSLSELSSSFQKCLNSNEKAMNVGE 847
Query: 733 PERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQA 792
+ S FLQ+KPFD+EAARK + + ++ D + + N+G K + +D+
Sbjct: 848 TDNPGNQSDFLQIKPFDYEAARKVVFGEDLEEDLEPENDKDPKASKNAGAKLDL-GLDRV 906
Query: 793 QKDDGTKELSQGRRRSAFPATGNRSATFR 821
QK+ GT EL QG+RR AFPATGNRSATFR
Sbjct: 907 QKNSGTVELPQGKRRHAFPATGNRSATFR 935
>gi|255569470|ref|XP_002525702.1| 3'-5' exonuclease, putative [Ricinus communis]
gi|223535002|gb|EEF36685.1| 3'-5' exonuclease, putative [Ricinus communis]
Length = 857
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/793 (55%), Positives = 537/793 (67%), Gaps = 103/793 (12%)
Query: 49 VKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLD 108
+K + K+KVPFH+PTI KPQEEY I+VNN+NQPF+HVWLQ+SED RFIHPL+ LS+LD
Sbjct: 148 LKAKGVKAKVPFHIPTIKKPQEEYNILVNNSNQPFEHVWLQRSEDGLRFIHPLEKLSILD 207
Query: 109 FVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLT 168
FVDK IG+ E V PPSLE TPFKLV+EVKDLKELAAKL++V+EFAVDLEHNQYRSF GLT
Sbjct: 208 FVDKSIGNAEPVSPPSLECTPFKLVKEVKDLKELAAKLRAVNEFAVDLEHNQYRSFQGLT 267
Query: 169 CLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 228
CLMQISTRTEDF++DTLKLR+ VGPYLREVFKDPTK+KVMHGADRDI+WLQRDFGIY+CN
Sbjct: 268 CLMQISTRTEDFIIDTLKLRIHVGPYLREVFKDPTKRKVMHGADRDIIWLQRDFGIYVCN 327
Query: 229 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 288
+FDTGQASRVLKLERNSLE+LL HFCG+ ANKEYQNADWR+RPL DEMLRY REDTHYLL
Sbjct: 328 LFDTGQASRVLKLERNSLEHLLRHFCGITANKEYQNADWRLRPLTDEMLRYGREDTHYLL 387
Query: 289 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 348
YIYD+M+I L SMP E+ENS++PL EVYKRSYDVC QLYEKELL+E+SYLHIYGLQ AG
Sbjct: 388 YIYDLMRIMLLSMPNETENSNSPLAEVYKRSYDVCMQLYEKELLTESSYLHIYGLQTAGF 447
Query: 349 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 408
NAQQLA+VAGLCEWRDVIAR +DESTG++LPN+TL+EIAKQ+P T KLRR LKSKH YI
Sbjct: 448 NAQQLAIVAGLCEWRDVIARTEDESTGFILPNKTLLEIAKQMPVTPQKLRRALKSKHPYI 507
Query: 409 ERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME-----------VASEETEVLV---LD 454
ER +G V+++++++MQNAA FE AQ+LKE +E + + + V V +D
Sbjct: 508 ERNLGSVVNVVRHAMQNAAEFEAAAQRLKEGCIETDNLSSIFAFFMKASQDNVEVNDDMD 567
Query: 455 TSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHP 514
+NL+ G E++ A+ G+ QLK+EP K ++
Sbjct: 568 MDTNLETAEAGTETICDGSAVEGSENALQTDSPQLKKEPLKAALAI-------------- 613
Query: 515 GEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNP-- 572
+A VQ LKKP FGALLG
Sbjct: 614 -------------------------------------DATVQVLKKPAGAFGALLGKSSA 636
Query: 573 -KRKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFG 631
KR+FD KKDK+ +KL++I+SSV+LPFHS R
Sbjct: 637 GKRRFDMAKKDKDEIKLDKIRSSVSLPFHSFLGRK------------------------- 671
Query: 632 SGEQTKPIIEESNRVTVVSQSEE--PAPAARPDTEDIITLEDDIDEEEQNLGNLETASAP 689
E KP EE N VT + EE PA EDII L D+ D Q + +T
Sbjct: 672 --EPAKPAAEEPNLVTETPRPEESFAVPATGSSLEDIILLGDNSDVVVQENVDSDTKDV- 728
Query: 690 GEDGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKP-ERSEEPSGFLQLKPF 748
S G E ++ E SLSDLSTSFQ+CF S N N+ ++S++P+G LQLKPF
Sbjct: 729 --SKSVGCESETDEEGEPASLSDLSTSFQKCFQSNNENKTNENNMQKSQDPTGLLQLKPF 786
Query: 749 DFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRS 808
D+ AARK++ FGE++K S G D ++ V D++K S +KDDGT++ QG+RR
Sbjct: 787 DYAAARKEVIFGEESKAASGGKDQSRNDGVK--DRRKNSVGGGVEKDDGTRDFPQGKRRQ 844
Query: 809 AFPATGNRSATFR 821
AFPATGNRSATFR
Sbjct: 845 AFPATGNRSATFR 857
>gi|224123860|ref|XP_002319182.1| predicted protein [Populus trichocarpa]
gi|222857558|gb|EEE95105.1| predicted protein [Populus trichocarpa]
Length = 858
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/837 (54%), Positives = 548/837 (65%), Gaps = 111/837 (13%)
Query: 1 MDVSFDEFSKARGENGEGDGNEGGFQLVYGKNKKKGDIVGGSAPASVKVKDRKE-----K 55
D S DEF + R E G + G GD + VKV D K+ K
Sbjct: 117 FDASIDEFRRVREETGRVVVSRAG-----------GD-------SGVKVADNKKWILGNK 158
Query: 56 SKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDIG 115
+KVPFH+PTI +PQEE+ I+VNN+N+ F HVWL++SED R IHPL+ LSVLDF+DK G
Sbjct: 159 AKVPFHIPTIRRPQEEHNILVNNSNRAFDHVWLERSEDGLRVIHPLERLSVLDFMDKSTG 218
Query: 116 DVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIST 175
DVE P +E T FKLVEEVKDLKELAAKL+ V+EFAVDLEHNQYRSF GLTCLMQIST
Sbjct: 219 DVEPAPPLPIESTSFKLVEEVKDLKELAAKLRGVNEFAVDLEHNQYRSFQGLTCLMQIST 278
Query: 176 RTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQA 235
RTEDF+VDTLKLR+ VGPYLREVFKDP K+KVMHGADRD+VWLQRDFGIY+CN+FDTGQA
Sbjct: 279 RTEDFIVDTLKLRIHVGPYLREVFKDPAKRKVMHGADRDVVWLQRDFGIYICNLFDTGQA 338
Query: 236 SRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
SRVLKLERNSLE+LLHHFCGV ANKEYQNADWR+RPLPDEM+RYAREDTHYLL+IYD+M+
Sbjct: 339 SRVLKLERNSLEHLLHHFCGVTANKEYQNADWRLRPLPDEMIRYAREDTHYLLHIYDLMR 398
Query: 296 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV 355
L S P ++EN+D PL EVYKRSYDVC QLYEKEL +ENSYL++YGL AG NAQQLA+
Sbjct: 399 ALLLSKPIDNENADPPLLEVYKRSYDVCMQLYEKELFTENSYLNMYGLPSAGFNAQQLAI 458
Query: 356 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPV 415
VAGL EWRD IARA+DESTGY+LPN+TL+EIAK++P T +KLR+LLKSKHSYIER++ V
Sbjct: 459 VAGLYEWRDAIARAEDESTGYILPNKTLLEIAKEMPVTISKLRQLLKSKHSYIERHLSSV 518
Query: 416 LSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDAL 475
+SII++SMQ +A FE Q LKE ME+AS+E E D S IP G GV A
Sbjct: 519 VSIIRHSMQTSAAFEAAVQHLKERHMEIASQE-ETEANDGSEARSIPG-GNGMNSGVAAC 576
Query: 476 VGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSSSG 535
T+ QL++ K GSS+ EL R G GS A H
Sbjct: 577 HETS-------AQLEKGLLKQGSSIVELGRGGQGS-------------SAKH-------- 608
Query: 536 QSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRKFDGEKKDKEAMKLEQIKS 593
A VQ LKKP FGALLG KRK D +KK KE +KLE+I+S
Sbjct: 609 ----------------HATVQVLKKPTGAFGALLGGAVAKRKLDTDKKVKEKIKLEKIRS 652
Query: 594 SVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVSQSE 653
SVNLPFHS G E K ++EE V+ +S E
Sbjct: 653 SVNLPFHSF---------------------------MGINEPPKVVVEEPIGVSEISHPE 685
Query: 654 EP--APAARPDTEDIITLEDDIDEE------EQNLGNLETASAPGEDGSAGSALEMGKQD 705
E PA +DII L++D D E E + + +T +A G+D S+GSALE +
Sbjct: 686 ESLDVPATGSSLQDIILLDNDSDMEQNTHIAEPDRDDSKTTNANGDDKSSGSALETDGE- 744
Query: 706 ETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGED-AK 764
E +SL+DLS SFQ+CF S N N+K + +S EPSG L+LKPFD+ A + GED A
Sbjct: 745 EPVSLADLSMSFQKCFPSGNQNKKTAEVMKSGEPSGGLKLKPFDYTTALRS---GEDPAG 801
Query: 765 EKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 821
G N+R ++S K S + QKDD T E QGRRR AFPATGNRSATFR
Sbjct: 802 RLKVGSAKNQRGVLDSVGTIKSSPGAKMQKDDETGEYRQGRRRQAFPATGNRSATFR 858
>gi|356514039|ref|XP_003525715.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 877
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/846 (52%), Positives = 556/846 (65%), Gaps = 98/846 (11%)
Query: 1 MDVSFDEFSKARGEN-----GEGDGNEGGFQLVYGKNKK--KGDIV--------GGSAPA 45
DVS DEF K E E GFQLV G+ KK +G++ S
Sbjct: 105 FDVSADEFRKVLQEEEARRPAMHSMEEDGFQLVSGRKKKGGRGNVTLAATDSETVASPGV 164
Query: 46 SVKVKDRKE---KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLD 102
+V KD+K KSKVPFH+PTI +PQ+EY IVVNNAN PF+HVWLQ+S+D RFIHPL+
Sbjct: 165 TVATKDKKTMGPKSKVPFHIPTIRRPQDEYSIVVNNANMPFEHVWLQRSDDGLRFIHPLE 224
Query: 103 NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYR 162
LSVLDFVD ++ DV VKPPS+E TPFKLV+EVKDLKEL AKL+SV+EFAVDLEHNQYR
Sbjct: 225 KLSVLDFVDTNLEDVVPVKPPSIESTPFKLVQEVKDLKELVAKLRSVNEFAVDLEHNQYR 284
Query: 163 SFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDF 222
SF GLTCLMQISTRTEDFVVDTLKLR+ +GPYLRE+FKDP K+KVMHGADRDIVWLQRDF
Sbjct: 285 SFQGLTCLMQISTRTEDFVVDTLKLRIHIGPYLREIFKDPAKRKVMHGADRDIVWLQRDF 344
Query: 223 GIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARE 282
GIY+CN+FDT QAS++L LERNSLE++LHHFC V ANKEYQNADWR+RPLP+EMLRYARE
Sbjct: 345 GIYICNLFDTHQASKLLNLERNSLEHILHHFCEVTANKEYQNADWRLRPLPNEMLRYARE 404
Query: 283 DTHYLLYIYDIMKIKLSSM---PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLH 339
DTHYLLYIYD+M+I+L ++ + SE+SDTP EVYKRSYDVC QLYEKE L+ENSYLH
Sbjct: 405 DTHYLLYIYDLMRIRLFALSKESESSESSDTPPVEVYKRSYDVCMQLYEKEFLTENSYLH 464
Query: 340 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 399
IYGLQGAG NAQQLA+V+GLCEWRD++ARA+DESTGYVLPN++++EIAKQ+P T +KLRR
Sbjct: 465 IYGLQGAGFNAQQLAIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMPLTTSKLRR 524
Query: 400 LLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNL 459
L+KSKH Y+E + V+SII++S+QN+A FE AQ+LKE + AS+ V+ +
Sbjct: 525 LVKSKHPYVEHNLDTVVSIIRHSIQNSAAFEEAAQQLKEAQAGTASD-----VVPFTDGT 579
Query: 460 KIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIA 519
+ P + T +P L+ EPPK ++A+
Sbjct: 580 EDPQSHTQDSKESSNHQDTNVPINLKSNSLRSEPPKDSLTIAD----------------- 622
Query: 520 SENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRKFD 577
Q+RD N + + A VQ LKKP FGALLGN KRK
Sbjct: 623 ----------------QNRDANVGALSTTKGNGATVQVLKKPTGAFGALLGNSASKRKL- 665
Query: 578 GEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTK 637
G K KE KLEQI+SSV+LPFHS GS E+++
Sbjct: 666 GPDKGKEDSKLEQIRSSVSLPFHSF---------------------------LGSSEKSE 698
Query: 638 PIIEESNRVTVVSQSEEPAP--AARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSA 695
P +E + + +S+ P + ++II LE E NLE++S E S
Sbjct: 699 PTVETHTVASEMLESQRPVSDVVSVSPLDEIIMLESGTGAENMEQNNLESSSEHREKDSV 758
Query: 696 GSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARK 755
S +DE++SL +LS++F++CFHS + N K P+++E+PSG + +KPFD+EAARK
Sbjct: 759 VSISGKEDEDESVSLLELSSNFKKCFHSNDQNYKTRWPKKTEQPSGLVPMKPFDYEAARK 818
Query: 756 QIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGN 815
++FGE K S+ + + +SG KK+ S + Q Q L QGRRR AFPA+GN
Sbjct: 819 HVKFGEHTKHASSKGSDSHMEVEDSGSKKQRSTIGQGQ-------LPQGRRRQAFPASGN 871
Query: 816 RSATFR 821
RS+TFR
Sbjct: 872 RSSTFR 877
>gi|224144831|ref|XP_002325430.1| predicted protein [Populus trichocarpa]
gi|222862305|gb|EEE99811.1| predicted protein [Populus trichocarpa]
Length = 855
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/837 (53%), Positives = 540/837 (64%), Gaps = 111/837 (13%)
Query: 1 MDVSFDEFSKARGENGEGDGNEGGFQLVYGKNKKKGDIVGGSAPASVKVKDRKE-----K 55
D S DEF + R E D + + VKV D K+ K
Sbjct: 114 FDTSIDEFKRVREETALSDDSASC----------------AGVDSGVKVADNKKGILGNK 157
Query: 56 SKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDIG 115
+KVPFH+PTI +PQEE+ I+VNN+N+ F+HVWL++SED R IHPL+ LSVLDFVDK IG
Sbjct: 158 AKVPFHIPTIRRPQEEHNILVNNSNRGFEHVWLERSEDGSRAIHPLEKLSVLDFVDKRIG 217
Query: 116 DVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIST 175
DVE P E TPFKLVEEVKDLKELAAKL+ V+EFAVDLEHNQYRSF GLTCLMQIST
Sbjct: 218 DVEPAPPLPTESTPFKLVEEVKDLKELAAKLRGVNEFAVDLEHNQYRSFQGLTCLMQIST 277
Query: 176 RTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQA 235
RTEDF+VDTLKLR+ VGPYLREVFKDP K+KVMHGADRDIVWLQRDFGIY+CN+FDTGQA
Sbjct: 278 RTEDFIVDTLKLRIHVGPYLREVFKDPAKRKVMHGADRDIVWLQRDFGIYICNLFDTGQA 337
Query: 236 SRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
SRVLKLERNSLEYLLHHFCGV A KEYQNA+WR+RPLPDEM+RYAREDTHYLL+IYD+M+
Sbjct: 338 SRVLKLERNSLEYLLHHFCGVTAKKEYQNAEWRLRPLPDEMIRYAREDTHYLLHIYDLMR 397
Query: 296 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV 355
L + +++N D PL EVYKRSYDVC QLYEKEL +ENSYL++YGL AG NAQQLA+
Sbjct: 398 ALLLTKHSDNDNGDPPLVEVYKRSYDVCMQLYEKELFTENSYLNMYGLPNAGFNAQQLAI 457
Query: 356 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPV 415
VAGL EWRD IARA+DESTGY+LPN+TL+EIAK++P T +KLRRLLKSKHSYIER++ V
Sbjct: 458 VAGLYEWRDAIARAEDESTGYILPNKTLLEIAKEMPVTPSKLRRLLKSKHSYIERHLSSV 517
Query: 416 LSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDAL 475
+SII++SMQ +A FE Q LKE ME AS++ DT N +SV G + +
Sbjct: 518 VSIIRHSMQTSAAFEAAVQHLKERLMETASQK------DTEVN---DGCEEKSVHGGNGM 568
Query: 476 VGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSSSG 535
G+ QLK+ K GSS+ EL + G S A H
Sbjct: 569 NGSVAAE--TSMQLKRGLLKQGSSIVELGKGGHES-------------SAKH-------- 605
Query: 536 QSRDLNACKSPSPRVTEAAVQALKKPNRGFGALL--GNPKRKFDGEKKDKEAMKLEQIKS 593
A VQ LKKP FGALL KRK +KK E +KLE+I+S
Sbjct: 606 ----------------HATVQILKKPTGAFGALLRGAAAKRKLGTDKKVGEEVKLEKIRS 649
Query: 594 SVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVSQSE 653
SVNLPFHS R+E KPV +PI+ E +S E
Sbjct: 650 SVNLPFHSFMPRNEPPKPV----------------------VEEPIVSE------ISHPE 681
Query: 654 E--PAPAARPDTEDIITLEDDID-EEEQNLGNLET-----ASAPGEDGSAGSALEMGKQD 705
E PA +DII L+DD D E++ +G E + +D S+G+ALE K +
Sbjct: 682 ESLAVPATGSSLQDIIMLDDDSDMEQDTRIGEPERDDSKPTNVNRDDISSGTALETDKVE 741
Query: 706 ETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKE 765
E +SLSDLSTS Q+ F S+N NR+ + ++S E S L+LKPFD+ AA + FGE E
Sbjct: 742 EPVSLSDLSTSSQKRFQSSNQNRRTAEGKKSGESSSVLKLKPFDYTAA---LRFGEGPTE 798
Query: 766 K-SAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 821
K G D N+R S K K S QKDD T E +GRRR AFPA+GNRSATFR
Sbjct: 799 KLKVGNDKNQRDVRVSVGKIKSSPGAPVQKDDETGEFREGRRRQAFPASGNRSATFR 855
>gi|297805136|ref|XP_002870452.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
lyrata]
gi|297316288|gb|EFH46711.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
lyrata]
Length = 867
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/848 (50%), Positives = 539/848 (63%), Gaps = 120/848 (14%)
Query: 1 MDVSFDEFSKARGENGE-----GDGNEGGFQLVYGKNKKK-GDIVGGSAP-----ASVKV 49
DVS DEF + R + E + GFQ+VYGK KK G+++ G A VK+
Sbjct: 112 FDVSVDEFQRIRKKEEEIGRPVAYNGDDGFQMVYGKKKKPVGNVITGLAANGGSVIDVKM 171
Query: 50 KDRKE----KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLS 105
+R + K+KVPFHVPTI KPQEEY I+VNNANQPF+HVWL++SED R +HPL+ LS
Sbjct: 172 AERDKNSSGKAKVPFHVPTIKKPQEEYNILVNNANQPFEHVWLERSEDDQRVMHPLEKLS 231
Query: 106 VLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFL 165
VLDFVDKD+ ++E VKP LE+TPFK V+EVKDLKEL AKL+ V+EFAVDLEHNQYRSF
Sbjct: 232 VLDFVDKDLNEMEPVKPLPLEETPFKFVQEVKDLKELVAKLRGVEEFAVDLEHNQYRSFQ 291
Query: 166 GLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIY 225
GLTCLMQISTRTED++VDT KLR+ +GPYLRE+FKDP KKK+MHGADRDI+WLQRDFGIY
Sbjct: 292 GLTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKIMHGADRDIIWLQRDFGIY 351
Query: 226 LCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTH 285
+CN+FDTGQASRVL L RNSLE+LL HFCGV ANKEYQNADWR+RPLP+EM RYAREDTH
Sbjct: 352 VCNLFDTGQASRVLNLGRNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTH 411
Query: 286 YLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG 345
YLLYIYD+M+++L M K+ E++D+PL +VYKRSYDVC QLYEKELL+ENSYLH+YGLQ
Sbjct: 412 YLLYIYDVMRLELERMAKDDEHTDSPLLQVYKRSYDVCTQLYEKELLTENSYLHVYGLQA 471
Query: 346 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 405
AG NA QLA+VAGLCEWRD IARA+DESTGYVLPN+ L+EIAK++P + KLRR+LKSKH
Sbjct: 472 AGFNAAQLAIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPVSVGKLRRMLKSKH 531
Query: 406 SYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVG 465
YIER + V+S+I+ SMQN+A FE A LK
Sbjct: 532 PYIERNVDSVVSVIRQSMQNSAAFESAALSLK---------------------------- 563
Query: 466 RESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEA 525
D GT M + K++ V + L N + E+ N +A
Sbjct: 564 -------DVSPGTVMDKNIEHISEKKDMHAVDVASPSLKEN-----SSQLESTRDLNMDA 611
Query: 526 THISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNP--KRKFDGEKKDK 583
+ + S G +A S + R++ KKP+ G GALLG+ K+K ++K K
Sbjct: 612 ANTNEGSGLGTGLFGSAKVSAAVRIS-------KKPSSGLGALLGSAASKKKSRTDEKVK 664
Query: 584 EAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEES 643
E +KLEQI+SSVNL FHS + P S + E T + +
Sbjct: 665 EDVKLEQIRSSVNLSFHSFTEK--------------------VPDSKSTTETTPKVYGKP 704
Query: 644 NRVTVVSQSEEPAPAARPDTEDIIT-LEDDIDEEEQNLGNLETASAPGEDGSA------- 695
+ Q A ED +T L+DD +E + +G S GS
Sbjct: 705 EEMFTTMQ-------ASVSKEDGVTELKDDSEEASEIVGTSGRVSESKVFGSKTGDIILL 757
Query: 696 --GSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAA 753
G E+ +DE MSLS+LST+FQ+CF S K ++++ + FL ++PFD+EAA
Sbjct: 758 ENGDEKEVEAEDEPMSLSELSTNFQKCFKSMK------KSNKAQKQTEFLNIEPFDYEAA 811
Query: 754 RKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPAT 813
RK+++FGE K + +K V +G KKK S +Q+ E QG+RR AFPA+
Sbjct: 812 RKEVKFGEGHKGRQG------KKEVAAGQKKKGSGPEQS-------EFGQGKRRQAFPAS 858
Query: 814 GNRSATFR 821
GNRSATF+
Sbjct: 859 GNRSATFK 866
>gi|334188034|ref|NP_198440.2| exosome complex exonuclease RRP6 [Arabidopsis thaliana]
gi|160892401|gb|ABX52080.1| RRP6-like protein 2 [Arabidopsis thaliana]
gi|332006642|gb|AED94025.1| exosome complex exonuclease RRP6 [Arabidopsis thaliana]
Length = 870
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/856 (49%), Positives = 540/856 (63%), Gaps = 134/856 (15%)
Query: 1 MDVSFDEFSKAR------GENGEGDGNEGGFQLVYGKNKKK-GDIVGGSAPAS------- 46
DVS DEF + R G + D + GFQ+VYGK KK G++V GSA +
Sbjct: 113 FDVSVDEFQRIRKKEKEIGRSVVADDGDDGFQMVYGKKKKPVGNVVTGSAAVNGGGSVID 172
Query: 47 VKVKDRKE----KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLD 102
VK+ +R + K+KVPFHVPTI KPQEEY I+VNNAN PF+HVWL++SED R +HPL+
Sbjct: 173 VKMAERDKNSSGKAKVPFHVPTIKKPQEEYNILVNNANLPFEHVWLERSEDDLRAMHPLE 232
Query: 103 NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYR 162
SVLDFVDKD+ ++E VKP LEQTPFK V+EVKDLKEL AKL+SV+EFAVDLEHNQYR
Sbjct: 233 KFSVLDFVDKDVNEMEPVKPLPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYR 292
Query: 163 SFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDF 222
SF GLTCLMQISTRTED++VDT KLR+ +GPYLRE+FKDP KKKVMHGADRDI+WLQRDF
Sbjct: 293 SFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDF 352
Query: 223 GIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARE 282
GIY+CN+FDTGQASRVL LERNSLE+LL HFCGV ANKEYQNADWR+RPLP+EM RYARE
Sbjct: 353 GIYVCNLFDTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYARE 412
Query: 283 DTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYG 342
DTHYLLYIYD++K++L M K+ ++D+PL EVYKRSYDVC QLYEKELL+ENSYLH+YG
Sbjct: 413 DTHYLLYIYDLIKLELQRMAKDDAHTDSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYG 472
Query: 343 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLK 402
LQ AG NA QLA+VAGLCEWRD IARA+DESTGYVLPN+ L+EIAK++P + KLRR+LK
Sbjct: 473 LQAAGFNAAQLAIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSVGKLRRMLK 532
Query: 403 SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLK--------EERMEVASEETEVLVLD 454
SKH YIER + V+S+I+ SMQ+ A FE A LK ++ +E SE+ ++ D
Sbjct: 533 SKHPYIERNVDSVVSVIRQSMQHYAAFESAALSLKDVSPGNVMDKNIEPISEKKDLHTGD 592
Query: 455 TSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHP 514
+S P++ S +QL+ + + + GLGS
Sbjct: 593 VAS----PSLKENS------------------SQLESTRDLIMGAANTNEGRGLGS---- 626
Query: 515 GEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNP-- 572
S+ S + K PS G GALLGN
Sbjct: 627 --------------GLFGSAKVSAAVRISKKPSS---------------GLGALLGNAAS 657
Query: 573 KRKFDGEKKDKEAMKLEQIKSSVNLPFHSIFAR------DEQLKPVDVMKSEPNKPDLPF 626
K+K ++K KE +KLEQI+SSVNL FHS + + P K E +P
Sbjct: 658 KKKSRTDEKVKEDVKLEQIRSSVNLSFHSFTEKVPDSKSTSETSPKVYGKPEEMSSTMPA 717
Query: 627 PSSFGSG-EQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLET 685
S G ++ K EE++ + S + + + DII LE+
Sbjct: 718 SVSKEDGVKELKDDSEEASEIVGTSGRVSESKVSSSEMGDIILLEN-------------- 763
Query: 686 ASAPGEDGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQL 745
G ++ +DE MSLS+LST+FQ+CF S N ++K +++ + FL +
Sbjct: 764 ----------GDEKKVDAEDEPMSLSELSTNFQKCFKSMNKSKK------AQKQTEFLNI 807
Query: 746 KPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGR 805
+PFD+EAARK+++FGE G G + K + +KK S +Q+ E QG+
Sbjct: 808 EPFDYEAARKEVKFGE-------GHKGRQGKREAAAGQKKGSTQEQS-------EFGQGK 853
Query: 806 RRSAFPATGNRSATFR 821
RR AFPA+GNRS +F+
Sbjct: 854 RRQAFPASGNRSMSFK 869
>gi|10176710|dbj|BAB09932.1| nucleolar protein-like [Arabidopsis thaliana]
Length = 834
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/815 (49%), Positives = 517/815 (63%), Gaps = 119/815 (14%)
Query: 25 FQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQPFQ 84
FQ + K K+ G ++ + + K+ K+KVPFHVPTI KPQEEY I+VNNAN PF+
Sbjct: 120 FQRIRKKEKESGSVI--DVKMAERDKNSSGKAKVPFHVPTIKKPQEEYNILVNNANLPFE 177
Query: 85 HVWLQKSEDSGRFIHPLDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAA 144
HVWL++SED R +HPL+ SVLDFVDKD+ ++E VKP LEQTPFK V+EVKDLKEL A
Sbjct: 178 HVWLERSEDDLRAMHPLEKFSVLDFVDKDVNEMEPVKPLPLEQTPFKFVQEVKDLKELVA 237
Query: 145 KLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTK 204
KL+SV+EFAVDLEHNQYRSF GLTCLMQISTRTED++VDT KLR+ +GPYLRE+FKDP K
Sbjct: 238 KLRSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKK 297
Query: 205 KKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQN 264
KKVMHGADRDI+WLQRDFGIY+CN+FDTGQASRVL LERNSLE+LL HFCGV ANKEYQN
Sbjct: 298 KKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLERNSLEFLLQHFCGVTANKEYQN 357
Query: 265 ADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCR 324
ADWR+RPLP+EM RYAREDTHYLLYIYD++K++L M K+ ++D+PL EVYKRSYDVC
Sbjct: 358 ADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHTDSPLLEVYKRSYDVCT 417
Query: 325 QLYEKELLSENSYLHIYGLQGAGLNAQQLAVVA-GLCEWRDVIARADDESTGYVLPNRTL 383
QLYEKELL+ENSYLH+YGLQ AG NA QLA+VA GLCEWRD IARA+DESTGYVLPN+ L
Sbjct: 418 QLYEKELLTENSYLHVYGLQAAGFNAAQLAIVAVGLCEWRDFIARAEDESTGYVLPNKVL 477
Query: 384 IEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLK------ 437
+EIAK++P + KLRR+LKSKH YIER + V+S+I+ SMQ+ A FE A LK
Sbjct: 478 LEIAKEMPDSVGKLRRMLKSKHPYIERNVDSVVSVIRQSMQHYAAFESAALSLKDVSPGN 537
Query: 438 --EERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPK 495
++ +E SE+ ++ D +S P++ S +QL+
Sbjct: 538 VMDKNIEPISEKKDLHTGDVAS----PSLKENS------------------SQLESTRDL 575
Query: 496 VGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAV 555
+ + + GLGS S+ S + K PS
Sbjct: 576 IMGAANTNEGRGLGS------------------GLFGSAKVSAAVRISKKPSS------- 610
Query: 556 QALKKPNRGFGALLGNP--KRKFDGEKKDKEAMKLEQIKSSVNLPFHSIFAR------DE 607
G GALLGN K+K ++K KE +KLEQI+SSVNL FHS +
Sbjct: 611 --------GLGALLGNAASKKKSRTDEKVKEDVKLEQIRSSVNLSFHSFTEKVPDSKSTS 662
Query: 608 QLKPVDVMKSEPNKPDLPFPSSFGSG-EQTKPIIEESNRVTVVSQSEEPAPAARPDTEDI 666
+ P K E +P S G ++ K EE++ + S + + + DI
Sbjct: 663 ETSPKVYGKPEEMSSTMPASVSKEDGVKELKDDSEEASEIVGTSGRVSESKVSSSEMGDI 722
Query: 667 ITLEDDIDEEEQNLGNLETASAPGEDGSAGSALEMGKQDETMSLSDLSTSFQECFHSANN 726
I LE+ G ++ +DE MSLS+LST+FQ+CF S N
Sbjct: 723 ILLEN------------------------GDEKKVDAEDEPMSLSELSTNFQKCFKSMNK 758
Query: 727 NRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKV 786
++K +++ + FL ++PFD+EAARK+++FGE G G + K + +KK
Sbjct: 759 SKK------AQKQTEFLNIEPFDYEAARKEVKFGE-------GHKGRQGKREAAAGQKKG 805
Query: 787 SAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 821
S +Q+ E QG+RR AFPA+GNRS +F+
Sbjct: 806 STQEQS-------EFGQGKRRQAFPASGNRSMSFK 833
>gi|26452498|dbj|BAC43334.1| putative nucleolar protein [Arabidopsis thaliana]
Length = 578
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/456 (68%), Positives = 372/456 (81%), Gaps = 18/456 (3%)
Query: 1 MDVSFDEFSKAR------GENGEGDGNEGGFQLVYGKNKKK-GDIVGGSAPAS------- 46
DVS DEF + R G + D + GFQ+VYGK KK G++V GSA +
Sbjct: 113 FDVSVDEFQRIRKKEKEIGRSVVADDGDDGFQMVYGKKKKPVGNVVTGSAAVNGGGSVID 172
Query: 47 VKVKDRKE----KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLD 102
VK+ +R + K+KVPFHVPTI KPQEEY I+VNNAN PF+HVWL++SED R +HPL+
Sbjct: 173 VKMAERDKNSSGKAKVPFHVPTIKKPQEEYNILVNNANLPFEHVWLERSEDDLRAMHPLE 232
Query: 103 NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYR 162
SVLDFVDKD+ ++E VKP LEQTPFK V+EVKDLKEL AKL+SV+EFAVDLEHNQYR
Sbjct: 233 KFSVLDFVDKDVNEMEPVKPLPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYR 292
Query: 163 SFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDF 222
SF GLTCLMQISTRTED++VDT KLR+ +GPYLRE+FKDP KKKVMHGADRDI+WLQRDF
Sbjct: 293 SFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDF 352
Query: 223 GIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARE 282
GIY+CN+FDTGQASRVL LERNSLE+LL HFCGV ANKEYQNADWR+RPLP+EM RYARE
Sbjct: 353 GIYVCNLFDTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYARE 412
Query: 283 DTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYG 342
DTHYLLYIYD++K++L M K+ ++D+PL EVYKRSYDVC QLYEKELL+ENSYLH+YG
Sbjct: 413 DTHYLLYIYDLIKLELQRMAKDDAHTDSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYG 472
Query: 343 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLK 402
LQ AG NA QLA+VAGLCEWRD IARA+DESTGYVLPN+ L+EIAK++P + KLRR+LK
Sbjct: 473 LQAAGFNAAQLAIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSVGKLRRMLK 532
Query: 403 SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKE 438
SKH YIER + V+S+I+ SMQ+ A FE A LK+
Sbjct: 533 SKHPYIERNVDSVVSVIRQSMQHYAAFESAALSLKD 568
>gi|334183304|ref|NP_001185222.1| RRP6-like protein 1 [Arabidopsis thaliana]
gi|332194982|gb|AEE33103.1| RRP6-like protein 1 [Arabidopsis thaliana]
Length = 639
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 281/392 (71%), Positives = 336/392 (85%)
Query: 55 KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDI 114
K++VPFH+PT+TKPQEEYKI+V+NAN PF+HV L+KSED RFIHPL+ LSV+DFVD+++
Sbjct: 40 KAEVPFHIPTLTKPQEEYKILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNL 99
Query: 115 GDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIS 174
++ VKP LE+TPFKLVEEVKDL++LAA L+SV+EFAVDLEHNQYR+F GLTCLMQIS
Sbjct: 100 SEMRPVKPLPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQIS 159
Query: 175 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
TRTED++VD KL +GPYLRE+FKDP KKKV+HGADRDI+WLQRDFGIY+CN+FDTGQ
Sbjct: 160 TRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQ 219
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
ASRVLKLERNSLE+LL H+CGV ANKEYQ ADWR+RPLPD M RYAREDTHYLLYIYD+M
Sbjct: 220 ASRVLKLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVM 279
Query: 295 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 354
+++L +M KE E SD+PL EVYKRSYDVC QLYEKEL + +SYLH+YG+Q LNA QL+
Sbjct: 280 RMELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQLS 339
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 414
+VAGLCEWRD IARADDESTGYVLPN+TL +IAK++P A+LRRLLKSK Y+ER
Sbjct: 340 IVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMPIVVAQLRRLLKSKLPYLERNFDA 399
Query: 415 VLSIIKNSMQNAANFEVIAQKLKEERMEVASE 446
V+S+I+ SMQNAA FE + Q LK+ R E E
Sbjct: 400 VISVIRRSMQNAAAFEPVVQSLKDRRPETVVE 431
>gi|145336746|ref|NP_175846.3| RRP6-like protein 1 [Arabidopsis thaliana]
gi|110741918|dbj|BAE98900.1| hypothetical protein [Arabidopsis thaliana]
gi|160892399|gb|ABX52079.1| RRP6-like protein 1 [Arabidopsis thaliana]
gi|332194981|gb|AEE33102.1| RRP6-like protein 1 [Arabidopsis thaliana]
Length = 637
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 281/392 (71%), Positives = 336/392 (85%)
Query: 55 KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDI 114
K++VPFH+PT+TKPQEEYKI+V+NAN PF+HV L+KSED RFIHPL+ LSV+DFVD+++
Sbjct: 40 KAEVPFHIPTLTKPQEEYKILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNL 99
Query: 115 GDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIS 174
++ VKP LE+TPFKLVEEVKDL++LAA L+SV+EFAVDLEHNQYR+F GLTCLMQIS
Sbjct: 100 SEMRPVKPLPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQIS 159
Query: 175 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
TRTED++VD KL +GPYLRE+FKDP KKKV+HGADRDI+WLQRDFGIY+CN+FDTGQ
Sbjct: 160 TRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQ 219
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
ASRVLKLERNSLE+LL H+CGV ANKEYQ ADWR+RPLPD M RYAREDTHYLLYIYD+M
Sbjct: 220 ASRVLKLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVM 279
Query: 295 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 354
+++L +M KE E SD+PL EVYKRSYDVC QLYEKEL + +SYLH+YG+Q LNA QL+
Sbjct: 280 RMELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQLS 339
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 414
+VAGLCEWRD IARADDESTGYVLPN+TL +IAK++P A+LRRLLKSK Y+ER
Sbjct: 340 IVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMPIVVAQLRRLLKSKLPYLERNFDA 399
Query: 415 VLSIIKNSMQNAANFEVIAQKLKEERMEVASE 446
V+S+I+ SMQNAA FE + Q LK+ R E E
Sbjct: 400 VISVIRRSMQNAAAFEPVVQSLKDRRPETVVE 431
>gi|357146328|ref|XP_003573952.1| PREDICTED: exosome component 10-like [Brachypodium distachyon]
Length = 906
Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust.
Identities = 368/851 (43%), Positives = 510/851 (59%), Gaps = 97/851 (11%)
Query: 4 SFDEFSKARGENGEGDGNEG--------GFQLVYGKNKK----------KGDIVGGSAPA 45
S DEF KAR E E +G + GFQ+VYGK KK +G G S
Sbjct: 118 SADEF-KARREKEEAEGRKDAPQEISGDGFQVVYGKKKKKMGMGEEEIGRGQTFGASGSV 176
Query: 46 SVKVKDRK----EKSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPL 101
+ D+ K+KVPFH+P+I +PQ+ Y+IVV+N ++PF H +L++S+D R IHPL
Sbjct: 177 KMATMDKAAASGTKAKVPFHIPSIARPQDLYRIVVDNTSKPFAHAFLERSDDGCRAIHPL 236
Query: 102 DNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQY 161
+ L + D+ + + E +KPP+L+ TPF VE+ K L+ LA KLKS EFAVDLEHN Y
Sbjct: 237 EKLPMEQLFDRRVPESEPLKPPALDDTPFTFVEDRKTLEVLATKLKSATEFAVDLEHNHY 296
Query: 162 RSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRD 221
RSF GLTCLMQISTRTEDF+VDTLKLR +G LREVF+DPTKKKVMHGA RDI+WLQRD
Sbjct: 297 RSFQGLTCLMQISTRTEDFIVDTLKLRKYLGENLREVFQDPTKKKVMHGAGRDIIWLQRD 356
Query: 222 FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAR 281
FGIY+CN+FDTGQASR+L+++RNSLE+LLHHFCGV ANKEYQ+ADWR+RPLPDEM +YAR
Sbjct: 357 FGIYVCNLFDTGQASRILQMDRNSLEHLLHHFCGVVANKEYQSADWRLRPLPDEMTKYAR 416
Query: 282 EDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIY 341
EDTHYLLYIYD+M+++L + ES + + L EV KRS ++C QLYEKELL+++SYL+I+
Sbjct: 417 EDTHYLLYIYDLMRLRLVN---ESSDENDLLLEVCKRSNEICLQLYEKELLTDSSYLYIH 473
Query: 342 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 401
GL+ L+A+QLAV++GL +WRD +ARA+DESTGY+LPN+ L+EIAKQ+P T+ +L+R +
Sbjct: 474 GLKENELSARQLAVLSGLYQWRDSVARAEDESTGYILPNKALLEIAKQMPLTSGRLKRTV 533
Query: 402 KSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLK- 460
KSK+ ++ER++G V++II+N+++N+ FE IA++LK+ R+E E+LV D ++ +
Sbjct: 534 KSKNPFLERHLGHVITIIRNAIENSVAFESIAEQLKKGRLE------ELLVADAKNSTED 587
Query: 461 ---IPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEA 517
IP V ++++ L + P T + +S A L LG+
Sbjct: 588 TEMIPAVNADNIESNFVLSDGSALVPTVITNVVTASSGNVTSGASLGNLQLGN------- 640
Query: 518 IASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRK-- 575
I E K +S + + L S +V +A VQ K+P FGALLG
Sbjct: 641 ITPETKSLVTLSGPTGLADTEVLT--NSSQQQVAKAKVQVSKRPT-AFGALLGKSSSGRR 697
Query: 576 ---FDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGS 632
F G ++ K+++IKSSV LPFH F S
Sbjct: 698 PNLFPGFSSEQSKSKVDKIKSSVVLPFHH------------------------FSGGVKS 733
Query: 633 GEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGED 692
+ P+ E S+ E E++I L+ E + G++
Sbjct: 734 PATSLPVAE-----LAYSEPESICNDPASQMEEVIQLDTGTHNHLP-----ENCNVDGQN 783
Query: 693 GSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERS-EEPSGFLQLKPFDFE 751
EM + S +LS+ ++ F S N +R + ++ EEP QLKPFD+
Sbjct: 784 HCEPEDTEM-----SSSPRELSSGNEQRFRSINESRNVQQNHKALEEPEFHDQLKPFDYA 838
Query: 752 AARKQIEFGEDAKEKSAGVDGNKRKPVN--SGDKKKVSAVDQAQKDDGTKELSQGRRRSA 809
ARK I FGE E+ D + +N SGDK++ S ++D+G + RRR A
Sbjct: 839 EARKNISFGEVKSERRK--DNAVARAINKDSGDKRRTSKQPGGEEDEG--DFQNPRRRQA 894
Query: 810 FPATGNRSATF 820
FP +GNRSAT+
Sbjct: 895 FPPSGNRSATY 905
>gi|297848030|ref|XP_002891896.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
lyrata]
gi|297337738|gb|EFH68155.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
lyrata]
Length = 681
Score = 616 bits (1588), Expect = e-173, Method: Compositional matrix adjust.
Identities = 282/393 (71%), Positives = 333/393 (84%)
Query: 55 KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDI 114
K+K PFH+PTITKPQEEYKI+V NAN+PF HV L+KSED RF+HPL+ LSV+DFVDK++
Sbjct: 133 KAKAPFHLPTITKPQEEYKILVENANKPFDHVLLEKSEDGLRFVHPLEKLSVMDFVDKNL 192
Query: 115 GDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIS 174
++ VKP LE+TPFKLV+EVKDL++LAA L+SV+EFAVDLEHNQYRSF GLTCLMQIS
Sbjct: 193 TEIIPVKPLPLEETPFKLVDEVKDLEDLAATLQSVEEFAVDLEHNQYRSFQGLTCLMQIS 252
Query: 175 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
TRTED++VDT KL +GP+LRE+FKDP KKKVMHGAD DI+WLQRDFGIY+CN+FDTGQ
Sbjct: 253 TRTEDYIVDTFKLWDHIGPHLRELFKDPKKKKVMHGADHDIIWLQRDFGIYVCNLFDTGQ 312
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
ASRVLKLER SLE+LL H+CGV A+K+YQNADWR+RPLPD M RYAREDTHYLLYIYD+M
Sbjct: 313 ASRVLKLERKSLEFLLKHYCGVAADKQYQNADWRIRPLPDVMTRYAREDTHYLLYIYDVM 372
Query: 295 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 354
+I L +M KE E SD+PL E YK SYDVC QLYEKELL+ +SYLH YG++ LNA QL+
Sbjct: 373 RIDLHTMAKEDEQSDSPLVEAYKGSYDVCMQLYEKELLTGDSYLHTYGVRSGNLNAVQLS 432
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 414
+VAGLCEWRD IARADDESTGYVLPN+TL +IAK +P T A+LRRLLKSKH YIER
Sbjct: 433 IVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKDMPITTAQLRRLLKSKHPYIERNFDA 492
Query: 415 VLSIIKNSMQNAANFEVIAQKLKEERMEVASEE 447
V+S+I+ SMQNAA FE + Q LK+ R E E+
Sbjct: 493 VISVIRRSMQNAAAFEPVVQSLKDWRPETVVEK 525
>gi|4585987|gb|AAD25623.1|AC005287_25 Similar to nucleolar protein [Arabidopsis thaliana]
Length = 642
Score = 616 bits (1588), Expect = e-173, Method: Compositional matrix adjust.
Identities = 281/394 (71%), Positives = 336/394 (85%), Gaps = 2/394 (0%)
Query: 55 KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDI 114
K++VPFH+PT+TKPQEEYKI+V+NAN PF+HV L+KSED RFIHPL+ LSV+DFVD+++
Sbjct: 40 KAEVPFHIPTLTKPQEEYKILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNL 99
Query: 115 GDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIS 174
++ VKP LE+TPFKLVEEVKDL++LAA L+SV+EFAVDLEHNQYR+F GLTCLMQIS
Sbjct: 100 SEMRPVKPLPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQIS 159
Query: 175 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
TRTED++VD KL +GPYLRE+FKDP KKKV+HGADRDI+WLQRDFGIY+CN+FDTGQ
Sbjct: 160 TRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQ 219
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
ASRVLKLERNSLE+LL H+CGV ANKEYQ ADWR+RPLPD M RYAREDTHYLLYIYD+M
Sbjct: 220 ASRVLKLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVM 279
Query: 295 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 354
+++L +M KE E SD+PL EVYKRSYDVC QLYEKEL + +SYLH+YG+Q LNA QL+
Sbjct: 280 RMELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQLS 339
Query: 355 VVA--GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 412
+VA GLCEWRD IARADDESTGYVLPN+TL +IAK++P A+LRRLLKSK Y+ER
Sbjct: 340 IVALQGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMPIVVAQLRRLLKSKLPYLERNF 399
Query: 413 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASE 446
V+S+I+ SMQNAA FE + Q LK+ R E E
Sbjct: 400 DAVISVIRRSMQNAAAFEPVVQSLKDRRPETVVE 433
>gi|222612881|gb|EEE51013.1| hypothetical protein OsJ_31642 [Oryza sativa Japonica Group]
Length = 877
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 351/789 (44%), Positives = 495/789 (62%), Gaps = 96/789 (12%)
Query: 55 KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDI 114
K+KVPFH+PTI +PQ+ ++I+V+N+++PF+H WL+KS+D R +HPL+ + + VD+D
Sbjct: 161 KAKVPFHIPTIPRPQDVHRILVDNSSKPFEHSWLEKSDDGSRVVHPLEKIPMEQLVDRDF 220
Query: 115 GDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIS 174
+ E +KPP+L+ TPF VE++K L+ LA KLKS EFAVDLEHN YRSF GLTCLMQIS
Sbjct: 221 PESEPIKPPALDDTPFTHVEDLKSLEVLATKLKSATEFAVDLEHNHYRSFQGLTCLMQIS 280
Query: 175 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
TRTEDF+VDTLKLR +G YLRE+FKDPTKKKVMHGADRDI+WLQRDFGIY+CN+FDTGQ
Sbjct: 281 TRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQ 340
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
ASR+L+++RNSLE+LLHHFCGV ANKEYQ+ADWR+RPLPDEM++YAREDTHYLLYIYD+M
Sbjct: 341 ASRILQMDRNSLEHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYIYDLM 400
Query: 295 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 354
+++L KES + + L EVYKRS ++C QLYEKELL+ +SYL+I+GL+ +A+QL+
Sbjct: 401 RLRLV---KESSDENDLLLEVYKRSKEICLQLYEKELLTHSSYLYIHGLKENEFDARQLS 457
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 414
V+A + +WRD +AR +DESTGY+LPN+TL+EIAKQ+P T +L+R++KSK+SY+ER++G
Sbjct: 458 VLANIYKWRDSVARGEDESTGYILPNKTLLEIAKQMPATTGRLKRIVKSKNSYLERHLGH 517
Query: 415 VLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDA 474
V+S I++++ N FE IA++LK+ R+E E+ V + SN DG
Sbjct: 518 VISTIRSAIANCDAFESIAEQLKKGRLE------ELAVANMKSN-----------DGDTE 560
Query: 475 LVGTTMPHPPAYTQLKQE----PPKVGSSVAELDRNGLGSFAHPGEAIAS---------E 521
+V PA + P +VA ++ +G+ +H + S E
Sbjct: 561 MV-------PADDGNNDDDNVGPSDEHGAVASVE--NVGAASHCTGNVTSGASSVNVQLE 611
Query: 522 NKEATHISTLSSSGQSRDLNACKSPSPR-VTEAAVQALKKPNRGFGALLGNP---KRK-- 575
N T + S +D+ + + V +A VQ K+P FGALLG P +R+
Sbjct: 612 NPAETKSLGILSGVSGQDMEVLSNGDRKQVAKATVQVSKRPT-AFGALLGKPTSGRRQNL 670
Query: 576 FDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQ 635
F G + +++IKSSV LPFH+ F + + E +P+ P S +
Sbjct: 671 FSGFSSGQNM--VDKIKSSVALPFHN-FCGGAKSPATSIPLEESVRPE---PESI---QY 721
Query: 636 TKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSA 695
+ P + + + + ++++ P P + + L D ++E + +P E SA
Sbjct: 722 SDPACQTEDVIQLGTETDGPQPPENHNKDGQGHLVPD---------DMEMSRSPPEHSSA 772
Query: 696 GSALEMGKQDETMSLSDLSTSFQECFHSAN--NNRKPGKPERSEEPSGFLQLKPFDFEAA 753
G+ KQ FQ S N N KP +EP QLKPFD+ A
Sbjct: 773 GA-----KQ-----------RFQSLIESRNQQQNHKP-----HQEPEFNHQLKPFDYAEA 811
Query: 754 RKQIEFGEDAKEKSAGVDGNKRKPVN--SGDKKKVSAVDQAQKDDGTKELSQGRRRSAFP 811
RK I FGE E+ D + +N SGDK + S A +++G ++ +GR+ AFP
Sbjct: 812 RKNITFGERKAERIK--DNAVARAINKDSGDKGRTSNQFGAGENEGNRQNPRGRQ--AFP 867
Query: 812 ATGNRSATF 820
+GNRSAT+
Sbjct: 868 PSGNRSATY 876
>gi|110289135|gb|AAP53938.2| Nucleolar protein, putative, expressed [Oryza sativa Japonica
Group]
Length = 902
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 351/789 (44%), Positives = 495/789 (62%), Gaps = 96/789 (12%)
Query: 55 KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDI 114
K+KVPFH+PTI +PQ+ ++I+V+N+++PF+H WL+KS+D R +HPL+ + + VD+D
Sbjct: 186 KAKVPFHIPTIPRPQDVHRILVDNSSKPFEHSWLEKSDDGSRVVHPLEKIPMEQLVDRDF 245
Query: 115 GDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIS 174
+ E +KPP+L+ TPF VE++K L+ LA KLKS EFAVDLEHN YRSF GLTCLMQIS
Sbjct: 246 PESEPIKPPALDDTPFTHVEDLKSLEVLATKLKSATEFAVDLEHNHYRSFQGLTCLMQIS 305
Query: 175 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
TRTEDF+VDTLKLR +G YLRE+FKDPTKKKVMHGADRDI+WLQRDFGIY+CN+FDTGQ
Sbjct: 306 TRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQ 365
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
ASR+L+++RNSLE+LLHHFCGV ANKEYQ+ADWR+RPLPDEM++YAREDTHYLLYIYD+M
Sbjct: 366 ASRILQMDRNSLEHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYIYDLM 425
Query: 295 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 354
+++L KES + + L EVYKRS ++C QLYEKELL+ +SYL+I+GL+ +A+QL+
Sbjct: 426 RLRLV---KESSDENDLLLEVYKRSKEICLQLYEKELLTHSSYLYIHGLKENEFDARQLS 482
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 414
V+A + +WRD +AR +DESTGY+LPN+TL+EIAKQ+P T +L+R++KSK+SY+ER++G
Sbjct: 483 VLANIYKWRDSVARGEDESTGYILPNKTLLEIAKQMPATTGRLKRIVKSKNSYLERHLGH 542
Query: 415 VLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDA 474
V+S I++++ N FE IA++LK+ R+E E+ V + SN DG
Sbjct: 543 VISTIRSAIANCDAFESIAEQLKKGRLE------ELAVANMKSN-----------DGDTE 585
Query: 475 LVGTTMPHPPAYTQLKQE----PPKVGSSVAELDRNGLGSFAHPGEAIAS---------E 521
+V PA + P +VA ++ +G+ +H + S E
Sbjct: 586 MV-------PADDGNNDDDNVGPSDEHGAVASVE--NVGAASHCTGNVTSGASSVNVQLE 636
Query: 522 NKEATHISTLSSSGQSRDLNACKSPSPR-VTEAAVQALKKPNRGFGALLGNP---KRK-- 575
N T + S +D+ + + V +A VQ K+P FGALLG P +R+
Sbjct: 637 NPAETKSLGILSGVSGQDMEVLSNGDRKQVAKATVQVSKRPT-AFGALLGKPTSGRRQNL 695
Query: 576 FDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQ 635
F G + +++IKSSV LPFH+ F + + E +P+ P S +
Sbjct: 696 FSGFSSGQNM--VDKIKSSVALPFHN-FCGGAKSPATSIPLEESVRPE---PESI---QY 746
Query: 636 TKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSA 695
+ P + + + + ++++ P P + + L D ++E + +P E SA
Sbjct: 747 SDPACQTEDVIQLGTETDGPQPPENHNKDGQGHLVPD---------DMEMSRSPPEHSSA 797
Query: 696 GSALEMGKQDETMSLSDLSTSFQECFHSAN--NNRKPGKPERSEEPSGFLQLKPFDFEAA 753
G+ KQ FQ S N N KP +EP QLKPFD+ A
Sbjct: 798 GA-----KQ-----------RFQSLIESRNQQQNHKP-----HQEPEFNHQLKPFDYAEA 836
Query: 754 RKQIEFGEDAKEKSAGVDGNKRKPVN--SGDKKKVSAVDQAQKDDGTKELSQGRRRSAFP 811
RK I FGE E+ D + +N SGDK + S A +++G ++ +GR+ AFP
Sbjct: 837 RKNITFGERKAERIK--DNAVARAINKDSGDKGRTSNQFGAGENEGNRQNPRGRQ--AFP 892
Query: 812 ATGNRSATF 820
+GNRSAT+
Sbjct: 893 PSGNRSATY 901
>gi|356571755|ref|XP_003554038.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 643
Score = 599 bits (1545), Expect = e-168, Method: Compositional matrix adjust.
Identities = 279/385 (72%), Positives = 332/385 (86%), Gaps = 2/385 (0%)
Query: 57 KVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDK-DIG 115
KVPFH+PTI KPQ Y IVV+N+N+PF+H+ L+KS+D R+IHPL+ LSVLDFVDK ++
Sbjct: 109 KVPFHIPTIKKPQYAYNIVVDNSNEPFEHILLEKSDDGQRYIHPLEKLSVLDFVDKENLE 168
Query: 116 DVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIST 175
++ V+PPS+E TPFKLVE+VK LKE+AA L SV+EFAVDLEHN YRSF GLTCLMQIST
Sbjct: 169 NLVPVEPPSIECTPFKLVEDVKGLKEVAAMLSSVNEFAVDLEHNHYRSFQGLTCLMQIST 228
Query: 176 RTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQA 235
RTEDFV+DTLK+R VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIY+CNMFDTGQ+
Sbjct: 229 RTEDFVIDTLKVRNHVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYVCNMFDTGQS 288
Query: 236 SRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
SRVLKL+R SL+YLL FCGV ANKEYQ+ADWR+RPLPD MLRY REDTHYLLYIYD+M+
Sbjct: 289 SRVLKLDRYSLQYLLQQFCGVTANKEYQSADWRLRPLPDVMLRYGREDTHYLLYIYDLMR 348
Query: 296 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV 355
IKL ++ KESE SD PL EVYKRSYDVC QLYEKELL E+SYLHI+GL+GAG NAQQLAV
Sbjct: 349 IKLFALSKESEGSDNPLLEVYKRSYDVCMQLYEKELLKEDSYLHIWGLRGAGFNAQQLAV 408
Query: 356 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL-KSKHSYIERYMGP 414
V+GL EWRD +ARADDE GYVLPNR ++EIA Q+P + LRR++ ++KH Y+ER +
Sbjct: 409 VSGLWEWRDGLARADDEGPGYVLPNRIILEIANQMPVIISNLRRIVGRTKHPYVERSLDV 468
Query: 415 VLSIIKNSMQNAANFEVIAQKLKEE 439
+++I+++SMQNAA FE A +LKEE
Sbjct: 469 IVNIVRHSMQNAAAFEEAALRLKEE 493
>gi|326521328|dbj|BAJ96867.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 906
Score = 593 bits (1529), Expect = e-166, Method: Compositional matrix adjust.
Identities = 365/857 (42%), Positives = 502/857 (58%), Gaps = 108/857 (12%)
Query: 3 VSFDEFSKARGENGEGDGNE--------GGFQLVYGKNKK----------KGDIVGGSAP 44
S DEF R E E G + GFQ+VYGK KK + + G S
Sbjct: 118 ASADEFKSLR-EKEEAQGRKVAAEEMAGDGFQVVYGKKKKKMGMGEEGVGRSEAFGPSGS 176
Query: 45 ASVKVKDRKE----KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHP 100
+ R K KVPFH+PTI +PQ+ ++IVV+N ++PF H +L++S+D R IHP
Sbjct: 177 VRMATMHRAAASGPKPKVPFHIPTIPRPQDVHRIVVDNTSKPFDHAFLERSDDGARAIHP 236
Query: 101 LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQ 160
L+ L + D+ + + E +KPP+L+ TPF VE+ + L+ L KLKS EFAVDLEHN
Sbjct: 237 LEKLPMEQLFDRRVPESEPLKPPALDDTPFTFVEDRRTLEVLVTKLKSATEFAVDLEHNH 296
Query: 161 YRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQR 220
YRSF GLTCLMQISTRTEDF+VDTLKLR +G LREVF+DPTKKKVMHGA RDI+WLQR
Sbjct: 297 YRSFQGLTCLMQISTRTEDFIVDTLKLRNCLGENLREVFQDPTKKKVMHGAGRDIIWLQR 356
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
DFGIY+CN+FDTGQASR+L+++RNSLE+LL +FCGV ANKEYQ+ADWR+RPLPDEM +YA
Sbjct: 357 DFGIYVCNLFDTGQASRILQMDRNSLEHLLQYFCGVTANKEYQSADWRLRPLPDEMTKYA 416
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 340
REDTHYLLYIYD+M+++L + ES D L EV KRS ++C QLYEKELL+++SYL+I
Sbjct: 417 REDTHYLLYIYDLMRLRLVN---ESSGDDL-LLEVCKRSNEICLQLYEKELLTDSSYLYI 472
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+GL+ L+A+QLAV+AGL +WRD +ARA+DESTGY+LPN+TL+EIAKQ+P T +L+R
Sbjct: 473 HGLKENDLSARQLAVLAGLYQWRDGVARAEDESTGYILPNKTLLEIAKQMPVTTGRLKRT 532
Query: 401 LKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME---VA-----SEETEVL- 451
+KSK+ ++E Y+G V++ I+N++ NA FE IA++LK+ R+E VA +E+TE++
Sbjct: 533 VKSKNKFLEHYLGHVITTIRNAVANADAFESIAEQLKKGRLEELMVAEVKDGAEDTEMIS 592
Query: 452 VLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSF 511
+D SN ++ ++ +V T+ +T G+S+ L +
Sbjct: 593 AVDADSN-------ESNLQLIEPVVAPTV-ITNIHTSFCTGNVTSGASLGNLQLDN---- 640
Query: 512 AHPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGN 571
+ E K + ++GQ+ + S +V +A VQ K+P FGALLG
Sbjct: 641 ------VTPETKSFGALP--GATGQADTVIPSNSGQQQVIKATVQVSKRPT-AFGALLGK 691
Query: 572 PKRK-----FDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPF 626
P F G D+ K+E+IKSSV LPFH + P LP
Sbjct: 692 PSSARRSNLFPGFSSDQSKSKVEKIKSSVVLPFHHFSG-----------GANPAATSLP- 739
Query: 627 PSSFGSGEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETA 686
V++S EP E I +D + E+ + L+T
Sbjct: 740 ----------------------VAKSVEP--------EAEIMCDDPASQMEEVI-QLDTG 768
Query: 687 SAPGEDGSAGSALEM--GKQDETMSLSDLSTSFQECFHSANNNRK-PGKPERSEEPSGFL 743
+ E+G+A E G D + S +LS+ ++ F N +R K + EEP
Sbjct: 769 TDDPENGNADGQSECKPGDTDVSSSPPELSSGIEQRFRPLNESRDLQQKHQAPEEPEFND 828
Query: 744 QLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQ 803
QLK FD+ ARK FGE E+ + +SGDK++ S ++
Sbjct: 829 QLKAFDYAEARKNTSFGEVRSERRKDNAVARAINADSGDKRRSSKQIPGGGEEDEGNFQN 888
Query: 804 GRRRSAFPATGNRSATF 820
RRR AFP +GNRSAT+
Sbjct: 889 PRRRQAFPPSGNRSATY 905
>gi|356514082|ref|XP_003525736.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 506
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 272/383 (71%), Positives = 317/383 (82%)
Query: 55 KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDI 114
K KVPFHV TI KPQ EY I V+N N PF HVWL+ S RFIHPL++LSV+ FVD D+
Sbjct: 5 KPKVPFHVSTIKKPQHEYNIFVDNTNLPFNHVWLKWSHGEKRFIHPLESLSVMSFVDTDV 64
Query: 115 GDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIS 174
GDV VK P +E TPFKLVE V+DLKELAAKL S DEFAVDLEHNQYR+F GLTCLMQIS
Sbjct: 65 GDVVPVKAPPIESTPFKLVETVQDLKELAAKLHSADEFAVDLEHNQYRTFQGLTCLMQIS 124
Query: 175 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
TRTEDF+VDTLKL +GPYLREVFKDP+K+KVMHGAD D+VWLQRDFGIY+CN+FDT Q
Sbjct: 125 TRTEDFIVDTLKLHSSIGPYLREVFKDPSKRKVMHGADNDVVWLQRDFGIYICNLFDTHQ 184
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
AS+VLKLER SLEYLL HFC + ANKEYQ+ADWR+RPLP EMLRYAREDTHYLLYIYD M
Sbjct: 185 ASKVLKLERKSLEYLLCHFCDITANKEYQSADWRLRPLPYEMLRYAREDTHYLLYIYDFM 244
Query: 295 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 354
+I+L SM KE E+ D PL EVYK SY VC +LYEKELL+E S+L IYGLQGAG NAQQLA
Sbjct: 245 RIELFSMLKEPESVDAPLVEVYKCSYKVCMRLYEKELLTEKSFLRIYGLQGAGFNAQQLA 304
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 414
VV+GL +WRD +AR D+STGYVLPN++++EIAKQ+P TA LR L+ S+H Y+E +
Sbjct: 305 VVSGLFKWRDFVARVKDDSTGYVLPNKSILEIAKQMPVTANNLRLLVNSRHPYVEHNLDS 364
Query: 415 VLSIIKNSMQNAANFEVIAQKLK 437
+++II++S+QN A FE IAQ LK
Sbjct: 365 LVNIIRHSIQNTAAFEEIAQLLK 387
>gi|218184595|gb|EEC67022.1| hypothetical protein OsI_33743 [Oryza sativa Indica Group]
Length = 854
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 332/789 (42%), Positives = 475/789 (60%), Gaps = 115/789 (14%)
Query: 55 KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDI 114
K+KVPFH+PTI +PQ+ ++I+V+N+++PF+H WL+KS+D R +HPL+ + + VD+D
Sbjct: 157 KAKVPFHIPTIPRPQDVHRILVDNSSKPFEHSWLEKSDDGSRVVHPLEKIPMEQLVDRDF 216
Query: 115 GDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIS 174
+ E +KP +L+ TPF VE++K L+ LA KLKS EFA IS
Sbjct: 217 PESEPIKPLALDDTPFTHVEDLKSLEVLATKLKSATEFA-------------------IS 257
Query: 175 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
TRTEDF+VDTLKLR +G YLRE+FKDPTKKKVMHGADRDI+WLQRDFGIY+CN+FDTGQ
Sbjct: 258 TRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQ 317
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
ASR+L+++RNSLE+LLHHFCGV ANKEYQ+ADWR+RPLPDEM++YAREDTHYLLYIYD+M
Sbjct: 318 ASRILQMDRNSLEHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYIYDLM 377
Query: 295 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 354
+++L KES + + L EVYKRS ++C QLYEKELL+ +SYL+I+GL+ +A+QL+
Sbjct: 378 RLRLV---KESSDENDLLLEVYKRSKEICLQLYEKELLTHSSYLYIHGLKENEFDARQLS 434
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 414
V+A + +WRD +AR +DESTGY+LPN+TL+EIAKQ+P T +L+R++KSK+ Y+ER++G
Sbjct: 435 VLANIYKWRDSVARGEDESTGYILPNKTLLEIAKQMPATTGRLKRIVKSKNLYLERHLGH 494
Query: 415 VLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDA 474
V+S I++++ N FE IA++LK+ R+E E+ V + SN DG
Sbjct: 495 VISTIRSAIANCDAFESIAEQLKKGRLE------ELAVANMKSN-----------DGDTE 537
Query: 475 LVGTTMPHPPAYTQLKQE----PPKVGSSVAELDRNGLGSFAHPGEAIAS---------E 521
+V PA + P +VA ++ +G+ +H + S E
Sbjct: 538 MV-------PADDGNNDDDNVGPSDEHGAVASVE--NVGAASHCTGNVTSGASSVNVQLE 588
Query: 522 NKEATHISTLSSSGQSRDLNACKSPSPR-VTEAAVQALKKPNRGFGALLGNP-----KRK 575
N T + S +D+ + + V +A VQ K+P FGALLG P +
Sbjct: 589 NPAETKSLGILSGVSGQDMEVLSNGDRKQVAKATVQVSKRPT-AFGALLGKPTSGRRQNL 647
Query: 576 FDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQ 635
F G + K+++IKSSV LPFH+ F + + E +P+ P S +
Sbjct: 648 FSGFSSGQN--KVDKIKSSVALPFHN-FCGGAKSPATSIPLEESVRPE---PESI---QY 698
Query: 636 TKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSA 695
+ P + + + + ++++ P P + + L D ++E + +P E SA
Sbjct: 699 SDPACQTEDVIQLGTETDGPQPPENHNEDGQGHLVPD---------DMEMSRSPPEHSSA 749
Query: 696 GSALEMGKQDETMSLSDLSTSFQECFHSAN--NNRKPGKPERSEEPSGFLQLKPFDFEAA 753
G+ KQ FQ S N N KP +EP QLKPFD+ A
Sbjct: 750 GA-----KQ-----------RFQSLIESRNQQQNHKP-----HQEPEFNHQLKPFDYAEA 788
Query: 754 RKQIEFGEDAKEKSAGVDGNKRKPVN--SGDKKKVSAVDQAQKDDGTKELSQGRRRSAFP 811
RK I FGE E+ D + +N SGDK + S A +++G ++ +GR+ AFP
Sbjct: 789 RKNITFGERKAERIK--DNAVARAINKDSGDKGRTSNQFGAGENEGNRQNPRGRQ--AFP 844
Query: 812 ATGNRSATF 820
+GNRSAT+
Sbjct: 845 PSGNRSATY 853
>gi|414871320|tpg|DAA49877.1| TPA: hypothetical protein ZEAMMB73_153639 [Zea mays]
Length = 901
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 340/814 (41%), Positives = 472/814 (57%), Gaps = 116/814 (14%)
Query: 40 GGSAPASVKVKDRKE----KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSG 95
GG + KD+ K+KVPFH+ TI +PQ+ Y IVV+N+++PF+H+ L +SED
Sbjct: 169 GGFGSVRMVTKDKAAAPGVKAKVPFHIRTIPRPQDVYCIVVDNSSKPFEHILLDRSEDGT 228
Query: 96 RFIHPLDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVD 155
R +HPL+ L V + +++ D E VKPP+L+ TPF VE++K L+ LA KLK EFAVD
Sbjct: 229 RVVHPLEKLPVEQIISRNVPDNEPVKPPALDNTPFTFVEDLKTLEVLATKLKDATEFAVD 288
Query: 156 LEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDI 215
LEHN YRSF GLTCLMQISTRTEDF+VDTLKLR +G YLRE F+DPTKKKVMHGA RDI
Sbjct: 289 LEHNHYRSFQGLTCLMQISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDI 348
Query: 216 VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDE 275
+WLQRDF IY+CN+FDTGQAS+VL+++RNSLE+LLHHFCGV ANKEYQ ADWR+RPLPDE
Sbjct: 349 IWLQRDFSIYVCNLFDTGQASKVLQMDRNSLEHLLHHFCGVAANKEYQAADWRLRPLPDE 408
Query: 276 MLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN 335
M++YAREDTHYLLYIYD+M+++L + S + L EV KRS ++C QLYEKE L++
Sbjct: 409 MIKYAREDTHYLLYIYDLMRLRLVN---GSSCENDLLLEVCKRSNEICLQLYEKEQLTDT 465
Query: 336 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 395
SYLHI+GL+ LNA QL+V++ L WRD IARA+DESTGY+LPN+TL+EIAK++P T+
Sbjct: 466 SYLHIHGLKENELNATQLSVLSSLYRWRDGIARAEDESTGYILPNKTLLEIAKEMPVTSG 525
Query: 396 KLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEV--------ASEE 447
KL+R++KS++S +ER + V++ I++++ + FE I ++LK+ ++E +SE+
Sbjct: 526 KLKRMIKSRNSILERNLNHVINNIRDAIAASGAFESIVEQLKKGKLEELTLADVKNSSED 585
Query: 448 TEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYT--------QLKQEPPKVGSS 499
TE++ N++ P+ V V VG P T L+ PK S
Sbjct: 586 TEMIPAVDVDNIEDPSDESAVVPAVITNVGAA----PCITSEASLGNMHLEDPVPKTKDS 641
Query: 500 VAELDRNGLGSFAHPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALK 559
A GL ++NK+ LS+ Q + +A VQ K
Sbjct: 642 GASSGFTGL-----------TDNKK------LSNDQQ------------QAAKATVQVSK 672
Query: 560 KPNRGFGALLGNPKRK-----FDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDV 614
+P FGAL G F G + K+++I SSV LPFH F+ +L
Sbjct: 673 RPT-AFGALFGKAAAGRRPDLFLGFSNVQGKTKVDKITSSVVLPFHH-FSGGAKL----- 725
Query: 615 MKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDID 674
+ LP S S + I+ S+ PA + E++I L+ D
Sbjct: 726 -----SSAALPAKESLHSEPDS---IQHSD------------PACQ--LEEVIQLDMGTD 763
Query: 675 EEEQNLGNLETASAPGEDGSAGSALEMGKQDETMSLS---DLSTSFQECFHSANNNRKPG 731
E++ P E+G+ +D MS S D S + Q F S N R
Sbjct: 764 EQQ-----------PPENGNEDDG-HCETEDTEMSKSPSGDPSVTEQR-FRSLNEERNVK 810
Query: 732 KPERSEEPSGF-LQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVD 790
+ +++ F + + PFD+ ARK + E+ + ++GDK++ S
Sbjct: 811 QNQKTPREFEFSVPVVPFDYAEARKNLVSSLPKAERRKDDAVARAINTDAGDKQRGS--- 867
Query: 791 QAQKDDGTKE----LSQGRRRSAFPATGNRSATF 820
+K G E RRR AFP +GNR+AT+
Sbjct: 868 --KKPPGGGENEGNFQHPRRRQAFPPSGNRNATY 899
>gi|115450833|ref|NP_001049017.1| Os03g0157800 [Oryza sativa Japonica Group]
gi|108706273|gb|ABF94068.1| 3'-5' exonuclease family protein, expressed [Oryza sativa Japonica
Group]
gi|113547488|dbj|BAF10931.1| Os03g0157800 [Oryza sativa Japonica Group]
gi|215695202|dbj|BAG90393.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624215|gb|EEE58347.1| hypothetical protein OsJ_09469 [Oryza sativa Japonica Group]
Length = 600
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 279/525 (53%), Positives = 370/525 (70%), Gaps = 27/525 (5%)
Query: 13 GENGEGDGNEGGFQLVYGKNKKKGDIVGGSAPA--SVKVKDRKE---------KSKVPFH 61
G+ + GFQ+V GK KK+ + S ++ KD+ K+KV FH
Sbjct: 17 GDKAAAEEAGDGFQVVRGKKKKRPNGGSASGAGSGTMMAKDKAAAAAAAEPWTKAKVSFH 76
Query: 62 VPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDIGDVEAVK 121
P I +PQ+ Y I VNN N PF HVWL+++ED R IHPL+ L + F+D+++ + E VK
Sbjct: 77 DPNIPRPQDVYAIRVNNYNVPFDHVWLERTEDGSRPIHPLEKLPMEQFIDRNVPESEPVK 136
Query: 122 PPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV 181
P LE TPF LVE+ L +LA KLKSV+EFAVDLEHNQYRSF GLTCLMQISTRTEDFV
Sbjct: 137 PADLEDTPFTLVEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFV 196
Query: 182 VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL 241
VDTLKLR+ +G YL+E FKDPTK+KVMHGADRDI+WLQRDF IY+CN+FDTGQASRVL++
Sbjct: 197 VDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVLQM 256
Query: 242 ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
ERNSLE+LL HFCGV ANKEYQNADWR RPL DEM++YAREDTHYLLY+YD+M+++L
Sbjct: 257 ERNSLEHLLRHFCGVTANKEYQNADWRSRPLSDEMIKYAREDTHYLLYMYDLMRLRLQ-- 314
Query: 302 PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCE 361
KES + + L EV KRS ++C QLYEKELL++ SYLHIYGLQ L+A+QLAVV L +
Sbjct: 315 -KESTSDNDLLLEVQKRSNEICLQLYEKELLTDTSYLHIYGLQEHDLDAKQLAVVYALHQ 373
Query: 362 WRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKN 421
WRD IAR DESTGYVLPN+ LIEIAK++PT A+L+R++KSK+ +++ + V+ II N
Sbjct: 374 WRDYIAREVDESTGYVLPNKALIEIAKKMPTDTAELKRMVKSKYPFVDENLDQVVGIIWN 433
Query: 422 SMQNAANFEVIAQKLKEERMEVASEETEVLV---LDTSSNL--KIPNVGRESV-DGVDAL 475
+ +++ FE A++LK+ER+E ++ + + + TS NL +I ++ +E + D +
Sbjct: 434 ATESSYAFESRAEQLKKERLEQLTDRVQTISSPEMKTSMNLSGQIRSMDKEILSDNIHQQ 493
Query: 476 VGTTMPHPPAYTQLKQEPP--KVGSSVAELDRNGLGSFAHPGEAI 518
V + +LK+ VG+S + R+ G F++ E +
Sbjct: 494 VAQA-----TFQELKRPMALGAVGNSTSGGQRDFFGGFSNKSEKM 533
>gi|218192123|gb|EEC74550.1| hypothetical protein OsI_10088 [Oryza sativa Indica Group]
Length = 599
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 277/514 (53%), Positives = 367/514 (71%), Gaps = 27/514 (5%)
Query: 24 GFQLVYGKNKKKGDIVGGSAPA--SVKVKDRKE---------KSKVPFHVPTITKPQEEY 72
GFQ+V GK KK+ + S ++ KD+ K+KV FH P I +PQ+ Y
Sbjct: 27 GFQVVRGKKKKRPNGGSASGAGSGTMMAKDKAAAAAAAEPWTKAKVSFHDPNIPRPQDVY 86
Query: 73 KIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKL 132
I VNN N PF HVWL+++ED R IHPL+ L + F+D+++ + E VKP LE TPF L
Sbjct: 87 AIRVNNYNVPFDHVWLERTEDGSRPIHPLEKLPMEQFIDRNVPESEPVKPADLEDTPFTL 146
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
VE+ L +LA KLKSV+EFAVDLEHNQYRSF GLTCLMQISTRTEDFVVDTLKLR+ +G
Sbjct: 147 VEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIYIG 206
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
YL+E FKDPTK+KVMHGADRDI+WLQRDF IY+CN+FDTGQASRVL++ERNSLE+LL H
Sbjct: 207 LYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVLQMERNSLEHLLRH 266
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPL 312
FCGV ANKEYQNADWR RPL DEM++YAREDTHYLLY+YD+M+++L KES + + L
Sbjct: 267 FCGVTANKEYQNADWRSRPLSDEMIKYAREDTHYLLYMYDLMRLRLQ---KESTSDNDLL 323
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
EV KRS ++C QLYEKELL++ SYLHIYGLQ L+A+QLAVV L +WRD IAR DE
Sbjct: 324 LEVQKRSNEICLQLYEKELLTDTSYLHIYGLQEHDLDAKQLAVVYALHQWRDYIAREVDE 383
Query: 373 STGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVI 432
STGYVLPN+ LIEIAK++PT A+L+R++KSK+ +++ + V+ II N+ +++ FE
Sbjct: 384 STGYVLPNKALIEIAKKMPTDTAELKRMVKSKYPFVDENLDQVVGIIWNATESSYAFESR 443
Query: 433 AQKLKEERMEVASEETEVLV---LDTSSNL--KIPNVGRESV-DGVDALVGTTMPHPPAY 486
A++LK+ER+E ++ + + + TS NL +I ++ +E + D + V +
Sbjct: 444 AEQLKKERLEQLTDRVQTISSPEMKTSMNLSGQIRSMDKEILSDNIHQQVAQA-----TF 498
Query: 487 TQLKQEPP--KVGSSVAELDRNGLGSFAHPGEAI 518
+LK+ +G+S + R+ G F++ E +
Sbjct: 499 QELKRPMALGAIGNSTSGGQRDFFGGFSNKSEKM 532
>gi|293334443|ref|NP_001170525.1| uncharacterized protein LOC100384536 [Zea mays]
gi|238005848|gb|ACR33959.1| unknown [Zea mays]
gi|414864884|tpg|DAA43441.1| TPA: hypothetical protein ZEAMMB73_373944 [Zea mays]
Length = 666
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 307/625 (49%), Positives = 392/625 (62%), Gaps = 71/625 (11%)
Query: 5 FDEFSKARGENGEGDGNEGG--------FQLVYGKNKKKGDIVGGSAPAS---------- 46
DE K RG G E G FQLV KKK G +
Sbjct: 1 MDEPEKVRGREDAASGREAGGAEEAGDGFQLVIHGKKKKRAASGQDCGTAGSGSGAGAGP 60
Query: 47 VKVKDRKEKSK--------VPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFI 98
V+ R++ + VPFH P+I +PQ+ YKI V+N +PF+HVWL++SED R +
Sbjct: 61 VRALTREKGAAPAPGAKAKVPFHDPSIPRPQDVYKIRVDNY-KPFEHVWLERSEDGTRRV 119
Query: 99 HPLDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEH 158
HPL+NL V FVD+++ D E VKP LE TPF LV++ K L ELA KLKSV EFAVDLEH
Sbjct: 120 HPLENLPVEQFVDRNVPDREPVKPADLEDTPFTLVQDHKGLTELAKKLKSVTEFAVDLEH 179
Query: 159 NQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWL 218
NQYRSF GLTCLMQISTRTEDF+VDTLKLR+ +G YL+E FKDPTK+KVMHGADRDI+WL
Sbjct: 180 NQYRSFQGLTCLMQISTRTEDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGADRDIMWL 239
Query: 219 QRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLR 278
QRDF IY+CN+FDTGQASRVL++ERNSLE+LL HFCGV A KEYQNADWR RPLPDEM++
Sbjct: 240 QRDFHIYVCNLFDTGQASRVLQMERNSLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIK 299
Query: 279 YAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYL 338
YAREDTHYLLYIYD+M+ +L +ES + L EV+KRS ++C Q YEKELL++ SYL
Sbjct: 300 YAREDTHYLLYIYDLMRQRLQ---RESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYL 356
Query: 339 HIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 398
HIYGLQ L+A+QLAVVA L EWRD IAR +DESTGY+LPN+ LIEIAKQ+PT L+
Sbjct: 357 HIYGLQEHELDARQLAVVAALHEWRDRIARQEDESTGYILPNKALIEIAKQMPTDVGHLK 416
Query: 399 RLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-----EVLVL 453
R++KSK+ Y+E + + + N+++ + FE IA++LK+ER+E + ++ EV L
Sbjct: 417 RIVKSKYPYVESNLELIAYTVWNALEYSYAFEGIAEQLKKERLEQVALKSGQTSDEVTPL 476
Query: 454 DTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAH 513
D ++ R + D D +VA R G S A
Sbjct: 477 DA-------DIDRSNFDSSDQ--------------------SANVNVASGSRAGFMSEAA 509
Query: 514 PGEAIASENKEATHISTLSSS---GQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLG 570
+I E+K T S +S GQ R +N S + + A+Q L + AL G
Sbjct: 510 LISSIHLEDKTQTMSSVKTSQTLLGQIRPVNK-DVLSNNIHQQAIQDL---SLTLKALKG 565
Query: 571 NPKRKFDGEKKDKEAMKLEQIKSSV 595
N GE ++ + +E +SSV
Sbjct: 566 NLAS--GGESNEQAGINVENFRSSV 588
>gi|242042163|ref|XP_002468476.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
gi|241922330|gb|EER95474.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
Length = 702
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 279/481 (58%), Positives = 350/481 (72%), Gaps = 36/481 (7%)
Query: 18 GDGNEGG--FQLV-YGKNKKK------------GDIVG-GSAPASVK----VKDRKEKSK 57
GD E G FQLV +GK KK+ G ++G GS A K K+K
Sbjct: 20 GDAEEAGDGFQLVTHGKKKKRAASGQDGGSPSSGAVLGAGSVRALTKDKGAAPAPGAKAK 79
Query: 58 VPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDIGDV 117
VPFH P+I +PQ+ YKI+V+N N PF+HVWL++SED R +HPL+ L V FV ++I +
Sbjct: 80 VPFHDPSIPRPQDVYKIIVDNYN-PFEHVWLERSEDGTRRVHPLEKLPVEQFVGRNIPER 138
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRT 177
E VKP +LE TPF LVE+ K L ELA KLK V EFAVDLEHNQYRSF GLTCLMQISTRT
Sbjct: 139 EPVKPAALEDTPFTLVEDHKGLVELAKKLKGVTEFAVDLEHNQYRSFQGLTCLMQISTRT 198
Query: 178 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 237
EDF+VDTLKLR+ +G YL+E FKDPTK+KVMHGADRDI+WLQRDF IY+CN+FDTGQASR
Sbjct: 199 EDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASR 258
Query: 238 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 297
VL++ERNSLE+LL HFCGV A KEYQNADWR RPLPDEM++YAREDTHYLLYIYD+M+ +
Sbjct: 259 VLQMERNSLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYLLYIYDLMRQR 318
Query: 298 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVA 357
L KES + L EV+KRS ++C Q YEKELL++ SYLHIYGLQ L+A+QLAVVA
Sbjct: 319 LQ---KESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYGLQEHELDAKQLAVVA 375
Query: 358 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLS 417
L EWRD IAR +DESTGY+LPN+ LIEIAKQ+PT L+R++KSK+ Y+E + +
Sbjct: 376 ALHEWRDSIARQEDESTGYILPNKALIEIAKQMPTDVGHLKRIVKSKYPYVESNLELIAY 435
Query: 418 IIKNSMQNAANFEVIAQKLKEERMEVASEET-----EVLVLDTSSNLKIPNVGRESVDGV 472
+ N+++ + +E IA++LK+ER+E + ++ EV LD ++GR + D
Sbjct: 436 TVWNALKYSYAYEGIAEQLKKERLEQLALKSGQASDEVTPLDA-------DIGRSNFDSS 488
Query: 473 D 473
D
Sbjct: 489 D 489
>gi|356514085|ref|XP_003525737.1| PREDICTED: LOW QUALITY PROTEIN: exosome component 10-like [Glycine
max]
Length = 429
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 249/381 (65%), Positives = 302/381 (79%), Gaps = 1/381 (0%)
Query: 58 VPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDIGDV 117
+PFH+ TI KPQ EY I V+N N PF HV L+ S RFIHPL+ +V+ FVD D+GDV
Sbjct: 1 MPFHISTIKKPQHEYNIFVDNTNLPFNHVXLKWSHGEKRFIHPLEKXTVMSFVDTDVGDV 60
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKEL-AAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTR 176
KPP +E TPFKLVE V+DLK + L S DEFAVDLEHNQYR+F GLTCLMQISTR
Sbjct: 61 VPAKPPPIESTPFKLVETVQDLKAPPLSMLHSADEFAVDLEHNQYRTFQGLTCLMQISTR 120
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
TEDF+VDTLKL +GPYLREVFKD + +KVMHGAD D++WLQRDFGIY+CN+FDT QAS
Sbjct: 121 TEDFIVDTLKLHSSIGPYLREVFKDLSNRKVMHGADNDVMWLQRDFGIYICNLFDTHQAS 180
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296
+VLKLER SL+YLL HFC + ANKEYQ+ADWR+RPLP EM+RYAREDTHYLLYIYD+M+I
Sbjct: 181 KVLKLERRSLKYLLCHFCDITANKEYQSADWRLRPLPYEMVRYAREDTHYLLYIYDLMRI 240
Query: 297 KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVV 356
+L SM E E+ D PL EVYK SY VC +LYEK LL+E S+L IYGLQGAG AQQL +V
Sbjct: 241 ELFSMLNEPESVDAPLVEVYKCSYKVCMRLYEKXLLTEKSFLRIYGLQGAGFTAQQLVIV 300
Query: 357 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVL 416
+GL +WRD +AR D+STGYVLPN++++EIAKQ+P TA LR L+ S+H Y+E + ++
Sbjct: 301 SGLFKWRDFVARVKDDSTGYVLPNKSILEIAKQMPVTANNLRLLVNSRHPYVEHNLDSLV 360
Query: 417 SIIKNSMQNAANFEVIAQKLK 437
II++S+QN + FE IAQ LK
Sbjct: 361 DIIRHSIQNTSAFEEIAQLLK 381
>gi|414864885|tpg|DAA43442.1| TPA: hypothetical protein ZEAMMB73_373944 [Zea mays]
Length = 577
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 270/464 (58%), Positives = 335/464 (72%), Gaps = 30/464 (6%)
Query: 5 FDEFSKARGENGEGDGNEGG--------FQLVYGKNKKKGDIVGGSAPAS---------- 46
DE K RG G E G FQLV KKK G +
Sbjct: 1 MDEPEKVRGREDAASGREAGGAEEAGDGFQLVIHGKKKKRAASGQDCGTAGSGSGAGAGP 60
Query: 47 VKVKDRKEKSK--------VPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFI 98
V+ R++ + VPFH P+I +PQ+ YKI V+N +PF+HVWL++SED R +
Sbjct: 61 VRALTREKGAAPAPGAKAKVPFHDPSIPRPQDVYKIRVDNY-KPFEHVWLERSEDGTRRV 119
Query: 99 HPLDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEH 158
HPL+NL V FVD+++ D E VKP LE TPF LV++ K L ELA KLKSV EFAVDLEH
Sbjct: 120 HPLENLPVEQFVDRNVPDREPVKPADLEDTPFTLVQDHKGLTELAKKLKSVTEFAVDLEH 179
Query: 159 NQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWL 218
NQYRSF GLTCLMQISTRTEDF+VDTLKLR+ +G YL+E FKDPTK+KVMHGADRDI+WL
Sbjct: 180 NQYRSFQGLTCLMQISTRTEDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGADRDIMWL 239
Query: 219 QRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLR 278
QRDF IY+CN+FDTGQASRVL++ERNSLE+LL HFCGV A KEYQNADWR RPLPDEM++
Sbjct: 240 QRDFHIYVCNLFDTGQASRVLQMERNSLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIK 299
Query: 279 YAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYL 338
YAREDTHYLLYIYD+M+ +L +ES + L EV+KRS ++C Q YEKELL++ SYL
Sbjct: 300 YAREDTHYLLYIYDLMRQRLQ---RESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYL 356
Query: 339 HIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 398
HIYGLQ L+A+QLAVVA L EWRD IAR +DESTGY+LPN+ LIEIAKQ+PT L+
Sbjct: 357 HIYGLQEHELDARQLAVVAALHEWRDRIARQEDESTGYILPNKALIEIAKQMPTDVGHLK 416
Query: 399 RLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 442
R++KSK+ Y+E + + + N+++ + FE IA++LK+ER+E
Sbjct: 417 RIVKSKYPYVESNLELIAYTVWNALEYSYAFEGIAEQLKKERLE 460
>gi|242034371|ref|XP_002464580.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor]
gi|241918434|gb|EER91578.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor]
Length = 882
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 342/852 (40%), Positives = 487/852 (57%), Gaps = 126/852 (14%)
Query: 6 DEFSKARGENGEGDGNEG------GFQLVYGKNKKK---GD--------IVGGSAPASVK 48
DEF KA E E G GFQ+V GK KKK GD GGS +
Sbjct: 119 DEF-KALREKEEASGRRAAPEAGDGFQMVCGKKKKKVGDGDEERVGRVEAFGGSGSVKMV 177
Query: 49 VKDRKE----KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNL 104
KD+ K+KVPFH+ TI +PQ+ Y+IVV+N+++PF+HV L++SED R +HPL+ L
Sbjct: 178 TKDKAAAPGVKAKVPFHIRTIPRPQDVYRIVVDNSSKPFEHVLLERSEDGTRVMHPLEKL 237
Query: 105 SVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSF 164
V +++++ D E VKPP+L TPF VE++K L+ LA KLK EFA
Sbjct: 238 PVEQQINRNVLDSEPVKPPALVDTPFTFVEDLKTLEVLATKLKDATEFA----------- 286
Query: 165 LGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGI 224
ISTRTEDF+VDTLKLR +G YLRE F+DPTKKKVMHGA RDI+WLQRDF I
Sbjct: 287 --------ISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDIIWLQRDFSI 338
Query: 225 YLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 284
Y+CN+FDTGQAS+VL+++RNSLE+LLHHFCGV ANKEYQ ADWR+RPLPDEM++YAREDT
Sbjct: 339 YVCNLFDTGQASKVLQMDRNSLEHLLHHFCGVTANKEYQAADWRLRPLPDEMIKYAREDT 398
Query: 285 HYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 344
HYLLYIYD+M+++L + ES + L EV KRS ++C QLYEKE L++ SYLHI+GL+
Sbjct: 399 HYLLYIYDLMRLRLVN---ESSGENDLLLEVCKRSNEICLQLYEKEQLTDTSYLHIHGLK 455
Query: 345 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 404
LNA+QL+V++ L WRD IARA+DESTGY+LPN+TL+EIAK++P T+ KL+R++KS+
Sbjct: 456 ENELNARQLSVLSSLYRWRDGIARAEDESTGYILPNKTLLEIAKEMPVTSGKLKRIVKSR 515
Query: 405 HSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEV--------ASEETEVLVLDTS 456
+ ++ER++G V++ I++++ + FE +A++LK+ ++E +SE+ E++
Sbjct: 516 NLFLERHLGHVINNIRDAIAASGAFESVAEQLKKGKLEELTVADVKNSSEDIEMIPAVDV 575
Query: 457 SNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGE 516
N++ PN V V VG P +G+ +E LG+ E
Sbjct: 576 GNIEDPNDESAVVSAVITNVGAA--------------PCMGTITSEA---SLGNMHL--E 616
Query: 517 AIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPK--R 574
+ E K++ S + + L+ + + +A VQ K+P FGAL G P R
Sbjct: 617 DVVPETKDSGTSSGFTGLADTEKLSNDQQ---QAAKATVQVSKRPT-AFGALFGKPAAGR 672
Query: 575 K---FDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFG 631
K F G + K+++I SSV LPFH ++P+ P LP S
Sbjct: 673 KPDLFLGFPNVQGKTKVDKITSSVVLPFHHFSG-----------GAKPSSPILPAKESLH 721
Query: 632 SGEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGE 691
S + I+ + PA R E++I L+ + DE + P E
Sbjct: 722 SEPEN---IQHGD------------PACR--LEEVIQLDMETDEPQ-----------PPE 753
Query: 692 DGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGF---LQLKPF 748
+G+ E + + S SD + ++ F + N R + +++ P F + + PF
Sbjct: 754 NGNEDGHCETEDTEMSKSPSDDPSGTEQRFRTLNEERNIQQNQKT--PREFELSVPVVPF 811
Query: 749 DFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRS 808
D+ ARK + + E+ + +SGDK+ S +D+G RRR
Sbjct: 812 DYAEARKNLVSSQPKAERRKDDAVARAINTDSGDKRIASKKPGGGEDEGN--FQHPRRRQ 869
Query: 809 AFPATGNRSATF 820
AFP +GNRSAT+
Sbjct: 870 AFPPSGNRSATY 881
>gi|357120688|ref|XP_003562057.1| PREDICTED: exosome component 10-like [Brachypodium distachyon]
Length = 690
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/411 (60%), Positives = 317/411 (77%), Gaps = 10/411 (2%)
Query: 31 KNKKKGDIVGGSAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQK 90
+ GD G APA K ++V +H P+I +PQ+ Y I VNN N PF HVWL+
Sbjct: 59 RTATSGDRPLGVAPAGAK-------ARVAYHDPSIPRPQDVYLIRVNNCNLPFDHVWLEP 111
Query: 91 SEDSGRFIHPLDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVD 150
SED R IHPL+ L + +D+++ ++E V+P +E +PF LVE++K L EL KLK V+
Sbjct: 112 SEDGTRRIHPLEKLPLEQLIDRNVPEIEPVRPADVEDSPFTLVEDLKGLMELVDKLKDVN 171
Query: 151 EFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
EFAVDLEHNQYRSF GLTCLMQISTRTEDF+VDTLKLR+ +GPYL++ FKDPTK+KVMHG
Sbjct: 172 EFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIYLGPYLQKHFKDPTKRKVMHG 231
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
ADRDI+WLQRDF IY+CN+FDTGQASRVL++ERNSLE+LLHHFCGV ANK YQNADWR R
Sbjct: 232 ADRDIIWLQRDFRIYVCNLFDTGQASRVLQMERNSLEHLLHHFCGVTANKVYQNADWRSR 291
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PL DEM++YAREDTHYLLYIYD+M+++L KES + L EV RS ++C QLYEKE
Sbjct: 292 PLSDEMIKYAREDTHYLLYIYDLMRLRLQ---KESTCENDLLLEVQNRSNEICLQLYEKE 348
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
LL++ SYLHIYGLQ L A QLAVV+ L +WRD AR +DESTGYVLPN+ LIEIAK++
Sbjct: 349 LLTDTSYLHIYGLQEHELEAAQLAVVSALHQWRDYTARQEDESTGYVLPNKALIEIAKKM 408
Query: 391 PTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERM 441
PT+ A+L+R++KSK+ ++E +L I+ N+ +N+ FE IA++LK+ R+
Sbjct: 409 PTSTAELQRIVKSKYPFVEANFDVILDIVWNATENSEAFEAIAEQLKKARL 459
>gi|326502996|dbj|BAJ99123.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 592
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 258/503 (51%), Positives = 337/503 (66%), Gaps = 27/503 (5%)
Query: 104 LSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRS 163
L V F+D+++ + E V+P ++ TPF LVE++K L EL KLK V+EFAVDLEHNQYRS
Sbjct: 7 LPVEQFIDRNVPESEPVRPADVDDTPFTLVEDLKGLTELVNKLKDVNEFAVDLEHNQYRS 66
Query: 164 FLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFG 223
F GLTCLMQISTR+EDF++DTLKLR+ +G YL+E+FKDPTK+KVMHGADRDI+WLQRDF
Sbjct: 67 FQGLTCLMQISTRSEDFIIDTLKLRIYIGSYLKEIFKDPTKRKVMHGADRDIMWLQRDFR 126
Query: 224 IYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARED 283
+Y+CN+FDTGQASRVL++ERNSLE+LLHHFCGV ANK YQNADWR RPL DEM++YARED
Sbjct: 127 VYVCNLFDTGQASRVLQMERNSLEHLLHHFCGVTANKIYQNADWRSRPLSDEMIKYARED 186
Query: 284 THYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGL 343
THYLLYIYD+M+++L +ES + + L EV KRS D+C QLYEKELL++ SYLHIYGL
Sbjct: 187 THYLLYIYDLMRLRLQ---RESTSENDLLLEVQKRSNDICLQLYEKELLTDKSYLHIYGL 243
Query: 344 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 403
Q L A QLAVV+ L +WRD IAR DESTGYVLPN+ LIEIAK++PTT A LRR++KS
Sbjct: 244 QEHELTAAQLAVVSALHQWRDYIARDQDESTGYVLPNKALIEIAKKMPTTTADLRRIVKS 303
Query: 404 KHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIP- 462
K+ ++ +L + N+ +N+ FE IA++LK+ R+ E +LDT +++
Sbjct: 304 KYPCVDDNFDLILDTVWNATENSGAFEAIAEQLKKVRL---GELDLKSILDTGEVIEMAP 360
Query: 463 ----NVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAI 518
NVG S D D P + ++ S + + G I
Sbjct: 361 SDADNVGI-SFDPADQYSLA----PSSTANIRVTSNSRDSFMTDGTLTGSIWLHDKTSTI 415
Query: 519 -ASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKR--- 574
+SENK + +S L+ S + + T AAV+ LK+P FGAL+GN
Sbjct: 416 PSSENKTSWSLSGLTGPSNKE----VMSNNKQETHAAVEELKRP-MPFGALVGNSTYGRQ 470
Query: 575 --KFDGEKKDKEAMKLEQIKSSV 595
F G ++ L+QI+SS
Sbjct: 471 TDYFGGFPNEQAQSGLDQIQSSA 493
>gi|414871321|tpg|DAA49878.1| TPA: hypothetical protein ZEAMMB73_153639 [Zea mays]
Length = 532
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 217/347 (62%), Positives = 273/347 (78%), Gaps = 7/347 (2%)
Query: 40 GGSAPASVKVKDRKE----KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSG 95
GG + KD+ K+KVPFH+ TI +PQ+ Y IVV+N+++PF+H+ L +SED
Sbjct: 169 GGFGSVRMVTKDKAAAPGVKAKVPFHIRTIPRPQDVYCIVVDNSSKPFEHILLDRSEDGT 228
Query: 96 RFIHPLDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVD 155
R +HPL+ L V + +++ D E VKPP+L+ TPF VE++K L+ LA KLK EFAVD
Sbjct: 229 RVVHPLEKLPVEQIISRNVPDNEPVKPPALDNTPFTFVEDLKTLEVLATKLKDATEFAVD 288
Query: 156 LEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDI 215
LEHN YRSF GLTCLMQISTRTEDF+VDTLKLR +G YLRE F+DPTKKKVMHGA RDI
Sbjct: 289 LEHNHYRSFQGLTCLMQISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDI 348
Query: 216 VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDE 275
+WLQRDF IY+CN+FDTGQAS+VL+++RNSLE+LLHHFCGV ANKEYQ ADWR+RPLPDE
Sbjct: 349 IWLQRDFSIYVCNLFDTGQASKVLQMDRNSLEHLLHHFCGVAANKEYQAADWRLRPLPDE 408
Query: 276 MLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN 335
M++YAREDTHYLLYIYD+M+++L + S + L EV KRS ++C QLYEKE L++
Sbjct: 409 MIKYAREDTHYLLYIYDLMRLRLVN---GSSCENDLLLEVCKRSNEICLQLYEKEQLTDT 465
Query: 336 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 382
SYLHI+GL+ LNA QL+V++ L WRD IARA+DESTGY+LPN+T
Sbjct: 466 SYLHIHGLKENELNATQLSVLSSLYRWRDGIARAEDESTGYILPNKT 512
>gi|357508795|ref|XP_003624686.1| Exosome complex exonuclease rrp6 [Medicago truncatula]
gi|355499701|gb|AES80904.1| Exosome complex exonuclease rrp6 [Medicago truncatula]
Length = 832
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 261/519 (50%), Positives = 318/519 (61%), Gaps = 87/519 (16%)
Query: 150 DEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMH 209
DE VDLEHNQYRSF GLTCLMQISTRTEDF+VDTLKLR VG +LR+VF DPTKKKV+H
Sbjct: 310 DEITVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLH 369
Query: 210 GADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRV 269
GADRDIVWLQRDFGIY+CNMFDTGQASRVLK+ER SL++LL HFCGV ANKEYQNADWR
Sbjct: 370 GADRDIVWLQRDFGIYICNMFDTGQASRVLKMERYSLQHLLQHFCGVTANKEYQNADWRA 429
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
RPLPD M++Y REDTHYLLYIYD+M+IKL + KESE+ D PL EVY+RSY+VC QLYEK
Sbjct: 430 RPLPDVMIKYGREDTHYLLYIYDLMRIKLFELSKESESPDDPLLEVYQRSYNVCMQLYEK 489
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVA-------------------------------- 357
+LL+ENS+L+I GL+GAG N QQLAVV+
Sbjct: 490 DLLTENSFLNIKGLRGAGFNGQQLAVVSGKTMVGSLQPQNTLLRRGKETQANGVPKVLIM 549
Query: 358 ---------------------GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 396
GL EWRDV+ARA+DESTGY+LPN+ ++ IAK +P TA+
Sbjct: 550 VVSDQKNKIVACIASALGFCTGLYEWRDVLARAEDESTGYILPNKVILLIAKHMPVTASN 609
Query: 397 LRRLL--KSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLD 454
LRRL+ +S+ Y+ER V++I+++SM AA FE A +LKEE A E L L
Sbjct: 610 LRRLIAERSRLPYVERNHDIVVNIVRHSMGKAAAFEEAALRLKEEH--AAFVEAAALRLK 667
Query: 455 TSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHP 514
+ NV SV+ GT P P+ + LK E GS
Sbjct: 668 EEHAASVSNVA--SVED-----GTEAPQSPSLS-LKDECAANGS---------------- 703
Query: 515 GEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGA-LLGNPK 573
I EN +IS S + +A K + VQALK P A LLGN
Sbjct: 704 ---IGIENATCVNISEKSLFSSDPNSSAVKLIGRQENGTNVQALKMPTVACDATLLGNST 760
Query: 574 RKFDG--EKKDKEAMKLEQIKSSVNLPFHSIFARDEQLK 610
+ +G +KK K+ +K+EQ SS+NLP HS +E+ K
Sbjct: 761 SEGNGYPDKKGKKKIKVEQNVSSINLPSHSFLGNNEKSK 799
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 101/156 (64%), Gaps = 12/156 (7%)
Query: 1 MDVSFDEFSKARGENGEGDGNEGGFQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPF 60
+D DEF + E G +G F++ K ++KG I+ G + + K KV F
Sbjct: 86 VDEVVDEFHRVLMEQDMEKGEDGFFKI---KKERKGLILWGDDHGN------ETKKKVSF 136
Query: 61 HVPTITKPQEEYKIVVNNANQPFQHVWL--QKSEDSGRFIHPLDNLSVLDFVDKD-IGDV 117
HV T+ KPQ Y + V+N+NQPF+HVWL +K+ED RFIHPL+ SVLDFVDK+ I +
Sbjct: 137 HVHTLRKPQYHYNLAVDNSNQPFEHVWLEKEKTEDGERFIHPLEYYSVLDFVDKNSIESL 196
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFA 153
VKPP LE TPFKLVE+VK LKELAAKL VDEFA
Sbjct: 197 VPVKPPPLEFTPFKLVEDVKGLKELAAKLSLVDEFA 232
>gi|124359359|gb|ABD28520.2| HRDC; Polynucleotidyl transferase, Ribonuclease H fold [Medicago
truncatula]
Length = 341
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/326 (65%), Positives = 260/326 (79%), Gaps = 5/326 (1%)
Query: 154 VDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADR 213
VDLEHNQYRSF GLTCLMQISTRTEDF+VDTLKLR VG +LR+VF DPTKKKV+HGADR
Sbjct: 16 VDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGADR 75
Query: 214 DIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLP 273
DIVWLQRDFGIY+CNMFDTGQASRVLK+ER SL++LL HFCGV ANKEYQNADWR RPLP
Sbjct: 76 DIVWLQRDFGIYICNMFDTGQASRVLKMERYSLQHLLQHFCGVTANKEYQNADWRARPLP 135
Query: 274 DEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS 333
D M++Y REDTHYLLYIYD+M+IKL + KESE+ D PL EVY+RSY+VC QLYEK+LL+
Sbjct: 136 DVMIKYGREDTHYLLYIYDLMRIKLFELSKESESPDDPLLEVYQRSYNVCMQLYEKDLLT 195
Query: 334 ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 393
ENS+L+I GL+GAG N QQLAVV+GL EWRDV+ARA+DESTGY+LPN+ ++ IAK +P T
Sbjct: 196 ENSFLNIKGLRGAGFNGQQLAVVSGLYEWRDVLARAEDESTGYILPNKVILLIAKHMPVT 255
Query: 394 AAKLRRLL--KSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVL 451
A+ LRRL+ +S+ Y+ER V++I+++SM AA FE A +LKEE A E L
Sbjct: 256 ASNLRRLIAERSRLPYVERNHDIVVNIVRHSMGKAAAFEEAALRLKEE--HAAFVEAAAL 313
Query: 452 VLDTSSNLKIPNVGRESVDGVDALVG 477
L + N+ S ++ L+G
Sbjct: 314 RLKEEHAASVSNIS-NSCQFLELLLG 338
>gi|326496869|dbj|BAJ98461.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 524
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 223/441 (50%), Positives = 292/441 (66%), Gaps = 27/441 (6%)
Query: 166 GLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIY 225
GLTCLMQISTR+EDF++DTLKLR+ +G YL+E+FKDPTK+KVMHGADRDI+WLQRDF +Y
Sbjct: 1 GLTCLMQISTRSEDFIIDTLKLRIYIGSYLKEIFKDPTKRKVMHGADRDIMWLQRDFRVY 60
Query: 226 LCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTH 285
+CN+FDTGQASRVL++ERNSLE+LLHHFCGV ANK YQNADWR RPL DEM++YAREDTH
Sbjct: 61 VCNLFDTGQASRVLQMERNSLEHLLHHFCGVTANKIYQNADWRSRPLSDEMIKYAREDTH 120
Query: 286 YLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG 345
YLLYIYD+M+++L +ES + + L EV KRS D+C QLYEKELL++ SYLHIYGLQ
Sbjct: 121 YLLYIYDLMRLRLQ---RESTSENDLLLEVQKRSNDICLQLYEKELLTDKSYLHIYGLQE 177
Query: 346 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 405
L A QLAVV+ L +WRD IAR DESTGYVLPN+ LIEIAK++PTT A LRR++KSK+
Sbjct: 178 HELTAAQLAVVSALHQWRDYIARDQDESTGYVLPNKALIEIAKKMPTTTADLRRIVKSKY 237
Query: 406 SYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIP--- 462
++ +L + N+ +N+ FE IA++LK+ R+ E +LDT +++
Sbjct: 238 PCVDDNFDLILDTVWNATENSGAFEAIAEQLKKVRL---GELDLKSILDTGEVIEMAPSD 294
Query: 463 --NVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAI-A 519
NVG S D D P + ++ S + + G I +
Sbjct: 295 ADNVGI-SFDPADQYSLA----PSSTANIRVTSNSRDSFMTDGTLTGSIWLHDKTSTIPS 349
Query: 520 SENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKR----- 574
SENK + +S L+ + S + + T AAV+ LK+P FGAL+GN
Sbjct: 350 SENKTSWSLSGLTGPSNKEVM----SNNKQETHAAVEELKRP-MPFGALVGNSTYGRQTD 404
Query: 575 KFDGEKKDKEAMKLEQIKSSV 595
F G ++ L+QI+SS
Sbjct: 405 YFGGFPNEQAQSGLDQIQSSA 425
>gi|302776536|ref|XP_002971426.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
gi|300160558|gb|EFJ27175.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
Length = 512
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 199/422 (47%), Positives = 274/422 (64%), Gaps = 24/422 (5%)
Query: 11 ARGENGEGDGNEGGFQLVYGKNKKKGDIVGGSAPAS---------VKV-KDRKEKSKVPF 60
A E G G G L+ KK G+A S VKV +KE+ VPF
Sbjct: 105 ALDELGLGAGKRPPDFLLRKGKKKNAPFASGNASESKSPTTSQRAVKVASQKKERLPVPF 164
Query: 61 HVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDIGDVEAV 120
HV ++ +PQ+++ +N+N PF+H L + E+ L ++ L D G E V
Sbjct: 165 HVRSLPRPQDKFDYPADNSNSPFKH--LSREEE-------LTSMEYLKEFPAD-GPDEPV 214
Query: 121 KPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDF 180
KP SL +TP +VE + L+ +AAKL + E AVDLE++ YRSF G CLMQ+STR++DF
Sbjct: 215 KPKSLSETPLFIVESLPALETMAAKLHASSEIAVDLENHHYRSFQGFVCLMQVSTRSQDF 274
Query: 181 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 240
+VDTL LR +GP LR VF +P+ +KV+HG+DRDI+WLQRDFGIY+CN+FDTGQA+RVL+
Sbjct: 275 IVDTLVLRSHIGPVLRSVFANPSIRKVIHGSDRDILWLQRDFGIYVCNLFDTGQAARVLR 334
Query: 241 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300
+ER L +LL FCGV +K YQ ADWR+RPL EML+YAREDTHYLLY+YD MK
Sbjct: 335 MERFGLAFLLQTFCGVTPDKRYQLADWRLRPLSAEMLKYAREDTHYLLYVYDKMK----G 390
Query: 301 MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 360
M +++E ++ EV +RS D+C QLYEKEL +E+S+LHIYGL L ++LA+VAGL
Sbjct: 391 MLRDAETTEDLYLEVCQRSRDLCLQLYEKELFTESSFLHIYGLAEKNLTPEKLAIVAGLY 450
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK 420
WRD + R++DESTGY+LPN L +A+ P A +L+ +L+ H + +L +I+
Sbjct: 451 AWRDKLCRSEDESTGYILPNSLLFRLAEDAPQDAKRLQGILRRGHPVAAFHSAALLKVIR 510
Query: 421 NS 422
++
Sbjct: 511 DA 512
>gi|302765286|ref|XP_002966064.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
gi|300166878|gb|EFJ33484.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
Length = 512
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 272/424 (64%), Gaps = 28/424 (6%)
Query: 11 ARGENGEGDGNEGGFQLVYGKNKKKGDIVGGSAPAS---------VKV-KDRKEKSKVPF 60
A E G G G L+ KK G+A S VKV +KE+ VPF
Sbjct: 105 ALDELGLGAGKRPPDFLLRKGKKKNAPFASGNASESKSSTTSQRAVKVASQKKERLPVPF 164
Query: 61 HVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFI--HPLDNLSVLDFVDKDIGDVE 118
HV ++ +PQ+++ +N+N PF+H+ ++ S ++ P D G E
Sbjct: 165 HVRSLPRPQDKFDYPADNSNSPFKHLSREEELTSMEYMKEFPAD------------GPDE 212
Query: 119 AVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTE 178
VKP SL +TP +VE + L+ +AAKL++ E AVDLE++ YRSF G CLMQ+STR++
Sbjct: 213 PVKPKSLSETPLFIVESLPALETMAAKLRASSEIAVDLENHHYRSFQGFVCLMQVSTRSQ 272
Query: 179 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 238
DF+VDTL LR +GP LR VF +P+ +KV+HG+DRDI+WLQRDFGIY+CN+FDTGQA+RV
Sbjct: 273 DFIVDTLVLRSHIGPVLRSVFANPSIRKVIHGSDRDILWLQRDFGIYVCNLFDTGQAARV 332
Query: 239 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298
L++ER L +LL FC V +K YQ ADWR+RPL EML+YAREDTHYLLY+YD MK
Sbjct: 333 LRMERFGLAFLLQTFCEVTPDKRYQLADWRLRPLSAEMLKYAREDTHYLLYVYDKMK--- 389
Query: 299 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 358
+ +++E ++ EV +RS D+C QLYEKEL +E+S+LHIYGL L ++LA+VAG
Sbjct: 390 -GLLRDAETTEDLYLEVCQRSRDLCLQLYEKELFTESSFLHIYGLAEKNLTPEKLAIVAG 448
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 418
L WRD + R++DESTGY+LPN L +A+ P +L+ +L+ H + +L +
Sbjct: 449 LYAWRDKLCRSEDESTGYILPNSLLFRLAEDAPQDVKRLQGILRRGHPVAAFHSAALLKV 508
Query: 419 IKNS 422
I+++
Sbjct: 509 IRDA 512
>gi|168065993|ref|XP_001784929.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663516|gb|EDQ50276.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 515
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/424 (45%), Positives = 285/424 (67%), Gaps = 18/424 (4%)
Query: 1 MDVSFDEFSKARGENGEGDGNEGGFQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPF 60
+D + D+ +K + + G NE K A AS K E+ VPF
Sbjct: 105 IDAAVDQLAKQKSDGKRGRPNE-----------KFRTPTNEGAKAS---KGSDERRSVPF 150
Query: 61 HVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPL-DNLSVLDFVDKDIGDVEA 119
HV +I +PQ ++ ++V+N+N PF+H +QK + +HPL D L+ +++V++ + +
Sbjct: 151 HVRSIPRPQNKFDVMVDNSNTPFKHPQVQKLDSQSEDMHPLEDVLTKMEYVNEKMLEAPV 210
Query: 120 VKPPS-LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTE 178
+ P +++TP ++ +LK++A K + E AVDLE++ YRSF G CLMQ+STR+E
Sbjct: 211 PQEPRPVDETPLTVISTASELKDMAMKCRLAGEIAVDLENHNYRSFQGFVCLMQVSTRSE 270
Query: 179 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG-QASR 237
DF+VD L LR +GP L+++F D KKVMHGADRDI WLQRDFGIY+CNMFDTG QA+R
Sbjct: 271 DFIVDALALRSHMGPSLKDLFADANVKKVMHGADRDIEWLQRDFGIYVCNMFDTGQQAAR 330
Query: 238 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 297
VL+LE L +L+ F +N +K YQ ADWR+RPLP EM++YAREDTHYLLY+YD++++
Sbjct: 331 VLQLEGFGLAFLMQRFLKINPDKRYQLADWRIRPLPAEMIKYAREDTHYLLYLYDLLRVV 390
Query: 298 LSSMPKESEN-SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVV 356
L SM + N +D P+ +VYKRS D+C ++Y+K++L+E SYL +YGLQ N++Q++V+
Sbjct: 391 LVSMRSTAGNDADDPVLQVYKRSRDICLKMYKKDILTETSYLSLYGLQDKNFNSEQMSVL 450
Query: 357 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVL 416
AGL WRD +AR DESTG+VLPN+ L ++A+++P TA L+ ++ HS + +Y VL
Sbjct: 451 AGLYAWRDNLARKLDESTGFVLPNQLLYKLAEEMPDTARTLQIAIRGPHSVVGQYTAEVL 510
Query: 417 SIIK 420
+I+
Sbjct: 511 EVIR 514
>gi|156361913|ref|XP_001625528.1| predicted protein [Nematostella vectensis]
gi|156212365|gb|EDO33428.1| predicted protein [Nematostella vectensis]
Length = 552
Score = 316 bits (810), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 162/299 (54%), Positives = 199/299 (66%), Gaps = 4/299 (1%)
Query: 124 SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVD 183
SLE TPF LVE V+ L+ L+ KL EFAVDLEH+ YRSFLG CLMQISTR DF+VD
Sbjct: 244 SLEDTPFTLVETVEQLESLSQKLMEAQEFAVDLEHHSYRSFLGFVCLMQISTRDHDFLVD 303
Query: 184 TLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLER 243
TL+LR + L E F +P KV HGAD D+ WLQRDFGIY+ NMFDTGQASRVL LER
Sbjct: 304 TLELRNDLH-LLNESFTNPNILKVFHGADMDVGWLQRDFGIYVVNMFDTGQASRVLALER 362
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
SL +LL FCGV A+K+YQ ADWR+RPLP+EM+RYAREDTHYLLYI+D ++ +L
Sbjct: 363 FSLAFLLKKFCGVTADKQYQLADWRIRPLPEEMIRYAREDTHYLLYIHDRLRNELIRTGN 422
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
E+ N L VY RS +VC++ YEK L + SY+++Y Q LN QL L WR
Sbjct: 423 ENNNL---LLSVYSRSTEVCQKHYEKPLFTSESYMNLYTKQRRPLNPVQLRAFRALYAWR 479
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
D IAR +DES GYVLPN L IA+ LP + + +++Y+ V +I S
Sbjct: 480 DTIARREDESYGYVLPNHMLFTIAETLPREPQGVLACCNPVPTLVKQYVNEVHQLILQS 538
>gi|320167779|gb|EFW44678.1| exosome component 10 protein [Capsaspora owczarzaki ATCC 30864]
Length = 945
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 181/412 (43%), Positives = 233/412 (56%), Gaps = 44/412 (10%)
Query: 18 GDGNEGGFQLVYGKNKKKGDIV----GGSAPASVKVKDRKEKSKVPFHVPTI-------- 65
G G Q GK +K G+ V G A + DR + S VPF VP +
Sbjct: 158 GSPKPNGKQPAPGKGRKGGEFVVLHAKGIARPQLTFADRVDNSNVPF-VPLVPLAPATLA 216
Query: 66 --TKPQEEYK--------------IVVNNANQ--PFQHVWLQKSEDSGRFIHPLDN-LSV 106
T Q EY ++ N N PF H D G F HP + L
Sbjct: 217 QLTPLQREYMAYAEQQRKEARPLGVLQNTFNPKVPFAH-------DLGSFPHPYERELLA 269
Query: 107 LDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLG 166
+ + + V + E+TPF ++ ++L + A +L SV EFA+DLEH+ YRS G
Sbjct: 270 FEPAETQLTAVAEQLYRTDEETPFTWIDSEEELIDFARRLSSVSEFAIDLEHHSYRSLQG 329
Query: 167 LTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYL 226
CLMQ+STRTED V+DTL +R + +LREVF +P KV HGAD D+VWLQ DFGIY
Sbjct: 330 FVCLMQVSTRTEDVVIDTLAVRSSMH-HLREVFANPNILKVFHGADMDVVWLQHDFGIYT 388
Query: 227 CNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHY 286
NMFDTGQA+RVL+L SL +LL +FC V A+K+YQ ADWR+RP+P EML+YAREDTHY
Sbjct: 389 INMFDTGQAARVLELGSYSLAHLLRYFCNVTADKKYQLADWRIRPIPAEMLQYAREDTHY 448
Query: 287 LLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS-ENSYLHIYGLQG 345
LLYIYD ++ +L S ES N L Y +S DVC + YEK L ENS++ ++
Sbjct: 449 LLYIYDRLRNELVSRSNESSNL---LRVAYAKSRDVCLKTYEKPLFDPENSHMQLFLKHS 505
Query: 346 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
QQ+ V L WRD + R +DESTGYVLPN L IA+ LPT +A +
Sbjct: 506 RTFGPQQMQVFKALFAWRDRMGREEDESTGYVLPNHMLFHIAEALPTESAGI 557
>gi|345327688|ref|XP_003431189.1| PREDICTED: exosome component 10 [Ornithorhynchus anatinus]
Length = 864
Score = 315 bits (806), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 168/360 (46%), Positives = 225/360 (62%), Gaps = 35/360 (9%)
Query: 60 FHVPTITKPQEEYKIVVNNANQPF-QHVWL----QKSEDSGR------------------ 96
H I +PQ ++ ++N+N PF +++ QK G
Sbjct: 166 LHAKNILRPQLRFREKIDNSNTPFVPKIFIKPNAQKPLAPGTYSPAGEIDRLQTGGGKNI 225
Query: 97 -FIHP----LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDE 151
F HP LD+ + + V + V+ +P +E+TPF L+ V DL EL KL ++ E
Sbjct: 226 LFAHPYKYELDHFTPPEAV-LEKPQVQMYRP--VEKTPFHLITTVDDLVELNEKLLNLKE 282
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
FAVDLEH+ YRSFLGLTCLMQISTRTEDF++DTL+LR ++ L E F DP+ KV HGA
Sbjct: 283 FAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSELY-ILNESFTDPSIVKVFHGA 341
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRP 271
D DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL+YLL H+C V A+K+YQ ADWR+RP
Sbjct: 342 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDYLLKHYCNVEADKQYQLADWRIRP 401
Query: 272 LPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL 331
LP EML YAR+DTHYLL++YD M++ L E L V++RS D+C + + K +
Sbjct: 402 LPREMLNYARDDTHYLLFVYDKMRLDLWERGNE---QPVQLQVVWQRSKDICLKRFIKPI 458
Query: 332 LSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+E SYL +Y LN QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 459 FTEESYLELYKKHKKHLNTQQLTAFQLLFSWRDKTARKEDESFGYVLPNHMMLKIAEELP 518
>gi|449268441|gb|EMC79305.1| Exosome component 10, partial [Columba livia]
Length = 829
Score = 308 bits (790), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 146/267 (54%), Positives = 194/267 (72%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+++TP V + +L EL KL + EFA+DLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 248 IKETPCHFVTTLDELVELNEKLMNCKEFALDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 307
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E F DP KV+HGAD D+ WLQ+DFG+YL NMFDT QA+R+L L R+
Sbjct: 308 LELRSDMN-ILNETFTDPAIVKVLHGADSDVEWLQKDFGLYLVNMFDTHQAARLLNLGRH 366
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C ++A+K+YQ ADWR+RPLP+EM++YAR+DTHYLLYIYD ++ ++ +
Sbjct: 367 SLDHLLKLYCNIDADKQYQLADWRIRPLPEEMIQYARDDTHYLLYIYDKVR---EALWER 423
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
T L V++RS D+C + Y K L S+ SYL +Y Q LN QQLA L WRD
Sbjct: 424 GNEQPTQLQVVWQRSRDICLKKYIKPLFSDESYLELYRRQKKHLNTQQLAAFRLLFAWRD 483
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
+AR +DESTGYVLPN L++IA++LP
Sbjct: 484 KMARQEDESTGYVLPNHMLLKIAEELP 510
>gi|344283517|ref|XP_003413518.1| PREDICTED: exosome component 10 isoform 1 [Loxodonta africana]
Length = 887
Score = 308 bits (789), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 148/267 (55%), Positives = 189/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDT
Sbjct: 283 VEETPCHFISSLDELVELNEKLLNCKEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL H+CGV +NK+YQ ADWR+RPLPDEML YAR+DTHYLLYIYD M+++L E
Sbjct: 402 SLDHLLKHYCGVESNKQYQLADWRIRPLPDEMLHYARDDTHYLLYIYDKMRLELWERGNE 461
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 462 QP---VQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFSWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|344283519|ref|XP_003413519.1| PREDICTED: exosome component 10 isoform 2 [Loxodonta africana]
Length = 862
Score = 308 bits (789), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 148/267 (55%), Positives = 189/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDT
Sbjct: 283 VEETPCHFISSLDELVELNEKLLNCKEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL H+CGV +NK+YQ ADWR+RPLPDEML YAR+DTHYLLYIYD M+++L E
Sbjct: 402 SLDHLLKHYCGVESNKQYQLADWRIRPLPDEMLHYARDDTHYLLYIYDKMRLELWERGNE 461
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 462 QP---VQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFSWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|351713711|gb|EHB16630.1| Exosome component 10 [Heterocephalus glaber]
Length = 882
Score = 307 bits (786), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 148/267 (55%), Positives = 191/267 (71%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP V + +L EL KL + +EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDT
Sbjct: 283 VEETPCHFVSSLDELVELNEKLLNCEEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E +P KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTNPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL+YLL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L E
Sbjct: 402 SLDYLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWERGNE 461
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
T L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L WRD
Sbjct: 462 QP---TQLQAVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFSWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESFGYVLPNHMMLKIAEELP 545
>gi|71051605|ref|NP_001012748.1| exosome component 10 [Gallus gallus]
Length = 910
Score = 307 bits (786), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 156/313 (49%), Positives = 210/313 (67%), Gaps = 11/313 (3%)
Query: 83 FQHVWLQKSEDSGRFIHP----LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKD 138
F H + + F HP L++ S D V K + + +P +++TP + + +
Sbjct: 258 FIHQQRTQQTEQDMFAHPYQYELEHFSPPDGVLKK-PEPQMYRP--IKETPCHFITTLDE 314
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L EL KL + EFA+DLEH+ YRSFLGLTCLMQISTRTEDF++DTL+LR + L E
Sbjct: 315 LVELNEKLMNCKEFALDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMS-ILNET 373
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNA 258
F DP KV+HGAD D+ WLQ+DFG+YL NMFDT QA+R+L L ++SL++LL +C V+A
Sbjct: 374 FTDPAIVKVLHGADSDVEWLQKDFGLYLVNMFDTHQAARLLNLGKHSLDHLLKLYCSVDA 433
Query: 259 NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKR 318
+K+YQ ADWR+RPLP+EM++YAR+DTHYLLYIYD M+ ++ + T L V++R
Sbjct: 434 DKQYQLADWRIRPLPEEMIQYARDDTHYLLYIYDKMR---EALWERGNEQPTQLKVVWQR 490
Query: 319 SYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVL 378
S D+C + Y K L S+ SYL +Y Q LN QQLA L WRD AR +DES GYVL
Sbjct: 491 SRDICLKKYIKPLFSDESYLELYRRQKKHLNTQQLAAFRLLFSWRDKTARQEDESIGYVL 550
Query: 379 PNRTLIEIAKQLP 391
PN L++IA++LP
Sbjct: 551 PNHMLLKIAEELP 563
>gi|45708813|gb|AAH67962.1| exosome component 10 [Xenopus (Silurana) tropicalis]
Length = 883
Score = 307 bits (786), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 170/393 (43%), Positives = 231/393 (58%), Gaps = 37/393 (9%)
Query: 20 GNEGGFQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPFHVPTITKP----------- 68
G F+L++ KN + +K K++ + S PF KP
Sbjct: 165 GKSETFRLLHAKNILR---------PQLKFKEKIDNSNTPFVSKLFVKPNAQKPLPEVLR 215
Query: 69 ------QEEYKIVVNNANQPFQHVWLQKSEDSGRFIHP----LDNLSVLDFVDKDIGDVE 118
Q + + V A F H K + F HP LD+ L+ + D++
Sbjct: 216 NRLERQQRQEDLDVPPALADFIHQQRMKISEEDMFCHPYQYELDHFVPLE-SSMEKPDIQ 274
Query: 119 AVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTE 178
V SL+ P K V +++DL L KL EFAVDLEH+ YRSFLGLTCLMQISTRTE
Sbjct: 275 PVL--SLQDVPCKFVMKLEDLVALNEKLLQCAEFAVDLEHHSYRSFLGLTCLMQISTRTE 332
Query: 179 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 238
D+++D L+LR + L E F +P+ KV+HGAD DI WLQ+DFG+Y+ NMFDT QA+R+
Sbjct: 333 DYIIDVLELRSNMY-ILNESFTNPSIIKVLHGADSDIEWLQKDFGLYIVNMFDTHQAARI 391
Query: 239 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298
L L R+SL++LL +C V ++K YQ ADWR+RPLP+EM+ YAR DTHYLL+IYD M+ L
Sbjct: 392 LNLGRHSLDHLLRLYCNVESDKRYQLADWRIRPLPEEMIEYARADTHYLLFIYDKMRTAL 451
Query: 299 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 358
E +N L V+++S D+C + + K + +E+SYL +Y Q LN QQL
Sbjct: 452 LGAANEQQNL---LQLVWQKSRDICLKKFTKSIFTEDSYLELYQKQKKHLNTQQLTAFRL 508
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
L WRD IAR +DESTGYVLPN L++I ++LP
Sbjct: 509 LFAWRDKIARQEDESTGYVLPNHMLLKITEELP 541
>gi|348041370|ref|NP_998833.2| exosome component 10 [Xenopus (Silurana) tropicalis]
Length = 890
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 170/393 (43%), Positives = 231/393 (58%), Gaps = 37/393 (9%)
Query: 20 GNEGGFQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPFHVPTITKP----------- 68
G F+L++ KN + +K K++ + S PF KP
Sbjct: 172 GKSETFRLLHAKNILR---------PQLKFKEKIDNSNTPFVSKLFVKPNAQKPLPEVLR 222
Query: 69 ------QEEYKIVVNNANQPFQHVWLQKSEDSGRFIHP----LDNLSVLDFVDKDIGDVE 118
Q + + V A F H K + F HP LD+ L+ + D++
Sbjct: 223 NRLERQQRQEDLDVPPALADFIHQQRMKISEEDMFCHPYQYELDHFVPLE-SSMEKPDIQ 281
Query: 119 AVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTE 178
V SL+ P K V +++DL L KL EFAVDLEH+ YRSFLGLTCLMQISTRTE
Sbjct: 282 PVL--SLQDVPCKFVMKLEDLVALNEKLLQCAEFAVDLEHHSYRSFLGLTCLMQISTRTE 339
Query: 179 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 238
D+++D L+LR + L E F +P+ KV+HGAD DI WLQ+DFG+Y+ NMFDT QA+R+
Sbjct: 340 DYIIDVLELRSNMY-ILNESFTNPSIIKVLHGADSDIEWLQKDFGLYIVNMFDTHQAARI 398
Query: 239 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298
L L R+SL++LL +C V ++K YQ ADWR+RPLP+EM+ YAR DTHYLL+IYD M+ L
Sbjct: 399 LNLGRHSLDHLLRLYCNVESDKRYQLADWRIRPLPEEMIEYARADTHYLLFIYDKMRTAL 458
Query: 299 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 358
E +N L V+++S D+C + + K + +E+SYL +Y Q LN QQL
Sbjct: 459 LGAANEQQNL---LQLVWQKSRDICLKKFTKSIFTEDSYLELYQKQKKHLNTQQLTAFRL 515
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
L WRD IAR +DESTGYVLPN L++I ++LP
Sbjct: 516 LFAWRDKIARQEDESTGYVLPNHMLLKITEELP 548
>gi|326932437|ref|XP_003212324.1| PREDICTED: exosome component 10-like [Meleagris gallopavo]
Length = 888
Score = 305 bits (780), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 155/313 (49%), Positives = 209/313 (66%), Gaps = 11/313 (3%)
Query: 83 FQHVWLQKSEDSGRFIHP----LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKD 138
F H + + F HP L++ S D V K + + +P +++TP + + +
Sbjct: 236 FIHQQRTQQTEQDMFAHPYQYELEHFSPPDGVLKK-PEPQMYRP--IKETPCHFITTLDE 292
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L EL KL + EFA+DLEH+ YRSFLGLTCLMQISTRTEDF++DTL+LR + L E
Sbjct: 293 LVELNEKLMNCKEFALDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMS-ILNET 351
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNA 258
F DP KV+HGAD D+ WLQ+DFG+YL NMFDT QA+R+L L ++SL++LL +C V+A
Sbjct: 352 FTDPAIVKVLHGADSDVEWLQKDFGLYLVNMFDTHQAARLLNLGKHSLDHLLKLYCSVDA 411
Query: 259 NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKR 318
+K+YQ ADWR+RPLP+EM++YAR+DTHYLLYIYD M+ ++ + T L V++R
Sbjct: 412 DKQYQLADWRIRPLPEEMIQYARDDTHYLLYIYDKMR---EALWEGGNKQPTQLKVVWQR 468
Query: 319 SYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVL 378
S D+C + Y K L S+ SYL +Y Q LN QQL L WRD AR +DES GYVL
Sbjct: 469 SRDICLKKYIKPLFSDESYLELYRRQKRHLNTQQLTAFRLLFSWRDKTARQEDESIGYVL 528
Query: 379 PNRTLIEIAKQLP 391
PN L++IA++LP
Sbjct: 529 PNHMLLKIAEELP 541
>gi|354502290|ref|XP_003513220.1| PREDICTED: exosome component 10 isoform 1 [Cricetulus griseus]
Length = 885
Score = 305 bits (780), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 156/301 (51%), Positives = 204/301 (67%), Gaps = 15/301 (4%)
Query: 97 FIHP----LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEF 152
F HP LD+ ++ D V + + +P +E+TP V + L EL KL EF
Sbjct: 254 FAHPYQYELDHFTLPDSVLQK-PQPQLYRP--VEETPCHFVSTLDQLVELNEKLLGCQEF 310
Query: 153 AVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGAD 212
AVDLEH+ YRSFLGLTCLMQISTRTEDF++DTL+LR + L E DP KV HGAD
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFILDTLELRSDMY-ILNESLTDPAIVKVFHGAD 369
Query: 213 RDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 272
DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPL
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPL 429
Query: 273 PDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKE 330
P+EML YAR+DTHYLLYIYD M+++L +D P L V++RS D+C + + K
Sbjct: 430 PEEMLNYARDDTHYLLYIYDRMRLELW-----ERGNDQPVQLQVVWQRSRDICLKKFVKP 484
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+ ++ SYL +Y Q LN+QQLA L WRD AR +DES GYVLPN +++IA++L
Sbjct: 485 IFTDESYLELYRKQKKHLNSQQLAAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEEL 544
Query: 391 P 391
P
Sbjct: 545 P 545
>gi|392340770|ref|XP_003754164.1| PREDICTED: exosome component 10-like isoform 1 [Rattus norvegicus]
gi|392348528|ref|XP_003750136.1| PREDICTED: exosome component 10-like isoform 1 [Rattus norvegicus]
gi|149024626|gb|EDL81123.1| rCG30986, isoform CRA_a [Rattus norvegicus]
Length = 885
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 148/269 (55%), Positives = 191/269 (71%), Gaps = 8/269 (2%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP +V + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDT
Sbjct: 283 VEETPCHVVSSLDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L
Sbjct: 402 SLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDRMRLELW----- 456
Query: 305 SENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEW 362
+D P L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L W
Sbjct: 457 ERGNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAW 516
Query: 363 RDVIARADDESTGYVLPNRTLIEIAKQLP 391
RD AR +DES GYVLPN +++IA++LP
Sbjct: 517 RDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|354502292|ref|XP_003513221.1| PREDICTED: exosome component 10 isoform 2 [Cricetulus griseus]
Length = 860
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 156/301 (51%), Positives = 204/301 (67%), Gaps = 15/301 (4%)
Query: 97 FIHP----LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEF 152
F HP LD+ ++ D V + + +P +E+TP V + L EL KL EF
Sbjct: 254 FAHPYQYELDHFTLPDSVLQK-PQPQLYRP--VEETPCHFVSTLDQLVELNEKLLGCQEF 310
Query: 153 AVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGAD 212
AVDLEH+ YRSFLGLTCLMQISTRTEDF++DTL+LR + L E DP KV HGAD
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFILDTLELRSDMY-ILNESLTDPAIVKVFHGAD 369
Query: 213 RDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 272
DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPL
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPL 429
Query: 273 PDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKE 330
P+EML YAR+DTHYLLYIYD M+++L +D P L V++RS D+C + + K
Sbjct: 430 PEEMLNYARDDTHYLLYIYDRMRLELW-----ERGNDQPVQLQVVWQRSRDICLKKFVKP 484
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+ ++ SYL +Y Q LN+QQLA L WRD AR +DES GYVLPN +++IA++L
Sbjct: 485 IFTDESYLELYRKQKKHLNSQQLAAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEEL 544
Query: 391 P 391
P
Sbjct: 545 P 545
>gi|392340772|ref|XP_003754165.1| PREDICTED: exosome component 10-like isoform 2 [Rattus norvegicus]
gi|392348530|ref|XP_003750137.1| PREDICTED: exosome component 10-like isoform 2 [Rattus norvegicus]
Length = 860
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 148/269 (55%), Positives = 191/269 (71%), Gaps = 8/269 (2%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP +V + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDT
Sbjct: 283 VEETPCHVVSSLDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L
Sbjct: 402 SLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDRMRLELW----- 456
Query: 305 SENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEW 362
+D P L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L W
Sbjct: 457 ERGNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAW 516
Query: 363 RDVIARADDESTGYVLPNRTLIEIAKQLP 391
RD AR +DES GYVLPN +++IA++LP
Sbjct: 517 RDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|148237165|ref|NP_001084822.1| exosome component 10 [Xenopus laevis]
gi|47124776|gb|AAH70757.1| MGC83774 protein [Xenopus laevis]
Length = 883
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 171/393 (43%), Positives = 229/393 (58%), Gaps = 37/393 (9%)
Query: 20 GNEGGFQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPFHVPTITKP----------- 68
G F+L++ KN + +K K++ + S PF KP
Sbjct: 165 GKNETFRLLHAKNILR---------PQLKFKEKIDNSNTPFVSKLFVKPNAQKPLPEVLR 215
Query: 69 ------QEEYKIVVNNANQPFQHVWLQKSEDSGRFIHP----LDNLSVLDFVDKDIGDVE 118
Q + + V +A F H + F HP LD+ L+ + + D++
Sbjct: 216 KRLETQQRQEDLDVPSALAEFIHQQRMNISEEYMFCHPYQYELDHFVPLE-LSMEKPDIQ 274
Query: 119 AVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTE 178
+ SL+ P V +++DL L KL EFAVDLEH+ YRSFLGLTCLMQISTRTE
Sbjct: 275 PIL--SLQDAPCNFVMKLEDLVALNEKLLQCAEFAVDLEHHSYRSFLGLTCLMQISTRTE 332
Query: 179 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 238
D+++D L+LR + L E F +P+ KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+
Sbjct: 333 DYIIDVLELRSNLY-ILNESFTNPSIIKVFHGADSDIEWLQKDFGLYIVNMFDTHQAARI 391
Query: 239 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298
L L R+SL++LL +C V ++K YQ ADWR+RPLP+EML YAR DTHYLLYIYD M+I L
Sbjct: 392 LNLGRHSLDHLLRLYCNVESDKRYQLADWRIRPLPEEMLEYARVDTHYLLYIYDKMRIAL 451
Query: 299 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 358
N L V++RS D+C + + K + +E SYL +Y Q LN QQL
Sbjct: 452 LDAANGQPNL---LQLVWQRSKDICLKRFTKLIFTEESYLDLYQKQKKHLNTQQLTAFRL 508
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
L WRD IAR +DESTGYVLPN L++IA++LP
Sbjct: 509 LFAWRDKIARREDESTGYVLPNHMLMKIAEELP 541
>gi|332250403|ref|XP_003274341.1| PREDICTED: exosome component 10 [Nomascus leucogenys]
Length = 912
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/268 (54%), Positives = 190/268 (70%), Gaps = 4/268 (1%)
Query: 124 SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVD 183
S+E+TP L+ + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++D
Sbjct: 306 SIEETPCHLISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIID 365
Query: 184 TLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLER 243
TL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R
Sbjct: 366 TLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGR 424
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 425 HSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELW---E 481
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WR
Sbjct: 482 RGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWR 541
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLP 391
D AR +DES GYVLPN +++IA++LP
Sbjct: 542 DKTARREDESYGYVLPNHMMLKIAEELP 569
>gi|405972152|gb|EKC36938.1| Exosome component 10 [Crassostrea gigas]
Length = 826
Score = 303 bits (776), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 165/387 (42%), Positives = 232/387 (59%), Gaps = 37/387 (9%)
Query: 65 ITKPQEEYKIVVNNANQPF------QHVWLQKSEDSGR------------FIHPLD---N 103
I +PQ +++ ++N N+PF + L+ E+S + F++P
Sbjct: 167 IQRPQVKFRDKIDNENRPFVPRITEKPNALKSLEESLKLPDDVNMLEDPDFVYPHPYKYE 226
Query: 104 LSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRS 163
LSVL D+ + D E +KP +E TP V V +L + KL+ AVDLEH+ YRS
Sbjct: 227 LSVLKPTDRQLQDTEPLKPRLVEDTPLTFVSTVIELSSVIDKLRKEHIVAVDLEHHSYRS 286
Query: 164 FLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFG 223
F G+TCLMQIST T+DF++DTL LR + P L E+F P KV HGAD DI WLQRD G
Sbjct: 287 FQGITCLMQISTATDDFLIDTLALRNDLSP-LNEIFTHPAVVKVFHGADSDIDWLQRDLG 345
Query: 224 IYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARED 283
+Y+ NMFDTGQA+RVL R SL +L+ H+C V +K+YQ ADWR+RPLP E+++YARED
Sbjct: 346 LYVVNMFDTGQAARVLNHSRFSLAHLMEHYCDVITDKQYQLADWRIRPLPAELMKYARED 405
Query: 284 THYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGL 343
THYL YIY MK +L + + +N L V +RS ++C ++Y+K++ E+SYL +Y
Sbjct: 406 THYLTYIYQRMKQELLARGNDQKNL---LLSVLQRSTEICAKVYKKQVFKEDSYLELYRK 462
Query: 344 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL------ 397
N++QL + L +WRD +AR +DESTGYVLPN +++IA LP +
Sbjct: 463 SKKVFNSRQLQALQKLYQWRDKLARQEDESTGYVLPNHMILQIADILPREQQGIFACCNP 522
Query: 398 -----RRLLKSKHSYI-ERYMGPVLSI 418
R+ L HS+I E P+L +
Sbjct: 523 IPPLVRQFLPEIHSFILEAREAPLLKV 549
>gi|6018165|gb|AAF01779.1|AF091392_1 P100 polymyositis-scleroderma overlap syndrome associated
autoantigen homolog [Mus musculus]
gi|74184429|dbj|BAE25741.1| unnamed protein product [Mus musculus]
gi|148682877|gb|EDL14824.1| exosome component 10, isoform CRA_c [Mus musculus]
Length = 887
Score = 303 bits (776), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 188/265 (70%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP LV + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 285 ETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 345 LRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 404 DHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELW---ERGN 460
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
+ L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L WRD
Sbjct: 461 HQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDKT 520
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 521 ARREDESYGYVLPNHMMLKIAEELP 545
>gi|227116266|ref|NP_057908.2| exosome component 10 [Mus musculus]
gi|341940669|sp|P56960.2|EXOSX_MOUSE RecName: Full=Exosome component 10; AltName: Full=Autoantigen
PM/Scl 2 homolog; AltName: Full=Polymyositis/scleroderma
autoantigen 2 homolog
Length = 887
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 188/265 (70%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP LV + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 285 ETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 345 LRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 404 DHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELW---ERGN 460
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
+ L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L WRD
Sbjct: 461 HQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDKT 520
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 521 ARREDESYGYVLPNHMMLKIAEELP 545
>gi|148682876|gb|EDL14823.1| exosome component 10, isoform CRA_b [Mus musculus]
Length = 864
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 188/265 (70%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP LV + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 287 ETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 346
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 347 LRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSL 405
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 406 DHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELW---ERGN 462
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
+ L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L WRD
Sbjct: 463 HQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDKT 522
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 523 ARREDESYGYVLPNHMMLKIAEELP 547
>gi|148682875|gb|EDL14822.1| exosome component 10, isoform CRA_a [Mus musculus]
Length = 916
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 188/265 (70%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP LV + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 288 ETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 347
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 348 LRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSL 406
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 407 DHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELW---ERGN 463
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
+ L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L WRD
Sbjct: 464 HQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDKT 523
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 524 ARREDESYGYVLPNHMMLKIAEELP 548
>gi|20381286|gb|AAH27840.1| Exosc10 protein [Mus musculus]
Length = 862
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 188/265 (70%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP LV + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 285 ETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 345 LRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 404 DHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELW---ERGN 460
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
+ L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L WRD
Sbjct: 461 HQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDKT 520
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 521 ARREDESYGYVLPNHMMLKIAEELP 545
>gi|20071218|gb|AAH27326.1| Exosome component 10 [Mus musculus]
Length = 887
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 188/265 (70%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP LV + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 285 ETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 345 LRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 404 DHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELW---ERGN 460
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
+ L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L WRD
Sbjct: 461 HQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDKT 520
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 521 ARREDESYGYVLPNHMMLKIAEELP 545
>gi|6018181|gb|AAF01781.1| P100 polymyositis-scleroderma overlap syndrome associated
autoantigen homolog [Mus musculus]
Length = 831
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 188/265 (70%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP LV + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 285 ETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 345 LRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 404 DHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELW---ERGN 460
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
+ L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L WRD
Sbjct: 461 HQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDKT 520
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 521 ARREDESYGYVLPNHMMLKIAEELP 545
>gi|359319087|ref|XP_535408.4| PREDICTED: exosome component 10 isoform 2 [Canis lupus familiaris]
Length = 886
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 147/265 (55%), Positives = 186/265 (70%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP V + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 285 ETPCHFVSSLDELVELNEKLLTCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DPT KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 345 LRSDMY-ILNESLTDPTIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L E
Sbjct: 404 DHLLKLYCSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWERGNEQP 463
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
L V++RS D+C + + K L ++ SYL +Y Q LN QQL L WRD
Sbjct: 464 ---VQLQVVWQRSRDICLKKFVKPLFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKT 520
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 521 ARREDESYGYVLPNHMMLKIAEELP 545
>gi|355686789|gb|AER98187.1| exosome component 10 [Mustela putorius furo]
Length = 732
Score = 302 bits (773), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 186/265 (70%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP V + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 161 ETPCHFVSSLDELVELNEKLLTCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 220
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 221 LRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSL 279
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L E
Sbjct: 280 DHLLKLYCGVESNKQYQLADWRIRPLPEEMLHYARDDTHYLLYIYDKMRLELWERGNE-- 337
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 338 -QPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKT 396
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 397 ARREDESYGYVLPNHMMLKIAEELP 421
>gi|432098121|gb|ELK28008.1| Exosome component 10 [Myotis davidii]
Length = 876
Score = 302 bits (773), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 144/265 (54%), Positives = 185/265 (69%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP V + +L EL KL EFA+DLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 274 ETPCHFVSSLDELVELNEKLLKCQEFAIDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 333
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 334 LRSDLY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSL 392
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL H+C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 393 DHLLKHYCNVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELW---ERGN 449
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 450 GQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKT 509
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 510 ARREDESYGYVLPNHMMLKIAEELP 534
>gi|395521908|ref|XP_003765056.1| PREDICTED: exosome component 10 [Sarcophilus harrisii]
Length = 992
Score = 301 bits (772), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 144/268 (53%), Positives = 186/268 (69%), Gaps = 4/268 (1%)
Query: 124 SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVD 183
S+E+TP V + +L EL KL S +F +DLEH+ YRSFLGLTCLMQISTRTEDF++D
Sbjct: 389 SVEETPCHFVSTLDELVELNEKLLSCKDFGIDLEHHSYRSFLGLTCLMQISTRTEDFIID 448
Query: 184 TLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLER 243
TL+LR + L E F DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R
Sbjct: 449 TLELRCDLY-ILNESFTDPAIVKVFHGADMDIEWLQKDFGLYVVNMFDTHQAARILNLGR 507
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
+SL++LL +C V NK+YQ ADWR+RPLP+EM YAR DTHYLLYIYD M+ S + +
Sbjct: 508 HSLDHLLKLYCNVETNKQYQLADWRIRPLPEEMFNYARHDTHYLLYIYDKMR---SDLWE 564
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
+ L V++RS D+C + + K + +E+SYL +Y Q LN QQL L WR
Sbjct: 565 RANGQPAQLQVVWQRSKDICLKKFIKPIFTEDSYLELYRKQKKHLNTQQLTAFQLLYSWR 624
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLP 391
D AR +DES GYVLPN +++IA++LP
Sbjct: 625 DRTARREDESYGYVLPNHMMLKIAEELP 652
>gi|359319089|ref|XP_003638993.1| PREDICTED: exosome component 10 isoform 1 [Canis lupus familiaris]
Length = 861
Score = 301 bits (772), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 147/265 (55%), Positives = 186/265 (70%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP V + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 285 ETPCHFVSSLDELVELNEKLLTCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DPT KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 345 LRSDMY-ILNESLTDPTIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L E
Sbjct: 404 DHLLKLYCSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWERGNEQP 463
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
L V++RS D+C + + K L ++ SYL +Y Q LN QQL L WRD
Sbjct: 464 ---VQLQVVWQRSRDICLKKFVKPLFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKT 520
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 521 ARREDESYGYVLPNHMMLKIAEELP 545
>gi|301774747|ref|XP_002922792.1| PREDICTED: exosome component 10-like isoform 2 [Ailuropoda
melanoleuca]
Length = 887
Score = 301 bits (772), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 144/265 (54%), Positives = 187/265 (70%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP V + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DTL+
Sbjct: 285 ETPCHFVSSLDELVELNEKLLTCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR ++ L E DP+ KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 345 LRSEMY-ILNESLTDPSIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L E
Sbjct: 404 DHLLKLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWERGNEQP 463
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
L ++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 464 ---VQLQVAWQRSRDICLKKFAKPIFTDESYLELYRKQKRHLNTQQLTAFQLLFAWRDKT 520
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 521 ARREDESYGYVLPNHMMLKIAEELP 545
>gi|444728183|gb|ELW68647.1| Serine/threonine-protein kinase mTOR [Tupaia chinensis]
Length = 3780
Score = 301 bits (771), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 147/267 (55%), Positives = 189/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP V + +L EL KL S EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 2972 VEETPCHFVSSLDELVELNEKLLSCREFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 3031
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E F DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 3032 LELRSDMY-ILNESFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 3090
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 3091 SLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELW---ER 3147
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
N L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 3148 GGNQPVQLQVVWQRSRDICLKKFLKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 3207
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 3208 KTARREDESYGYVLPNHMMLKIAEELP 3234
>gi|348571393|ref|XP_003471480.1| PREDICTED: exosome component 10-like isoform 1 [Cavia porcellus]
Length = 885
Score = 301 bits (771), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 147/267 (55%), Positives = 189/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP V + +L EL KL +EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDT
Sbjct: 283 VEETPCHFVSSLDELVELNEKLLRCEEFAVDLEHHSYRSFLGLTCLMQISTRTEDFLVDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR ++ L E +P KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSEMY-ILNESLTNPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +CGV +NK+YQ ADWRVRPLP+EML YAR+DTHYLLYIYD M++ L E
Sbjct: 402 SLDHLLRLYCGVESNKQYQLADWRVRPLPEEMLSYARDDTHYLLYIYDKMRLDLWERGNE 461
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L WRD
Sbjct: 462 QP---VQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|384247138|gb|EIE20625.1| hypothetical protein COCSUDRAFT_18228, partial [Coccomyxa
subellipsoidea C-169]
Length = 344
Score = 301 bits (771), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 163/342 (47%), Positives = 214/342 (62%), Gaps = 12/342 (3%)
Query: 67 KPQEEYKIVVNNANQPFQ----HVWLQKSEDSGRFIHPLDN-LSVLDFVDKDIGDVEAVK 121
+PQ+ + V+N+N PF+ H W+++ +HPL+ L+ L + DK + E
Sbjct: 2 RPQDAFNPPVDNSNTPFRPKLGH-WVRREAA----VHPLEAALNDLKYEDKQLEAPEPQL 56
Query: 122 PPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV 181
P L++TP V+ + LK LA L +V E AVDLE + +RSF G CLMQ+STRT D++
Sbjct: 57 PQGLDETPLTYVDTLDGLKSLAQALSAVREVAVDLEAHSFRSFQGFCCLMQVSTRTADYL 116
Query: 182 VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL 241
VD + LR +GP+L +F D KV+HG+D DIVWLQRDFGIY+ ++FDTGQA+RVL
Sbjct: 117 VDVIALRSHIGPHLAPMFADTKIVKVLHGSDSDIVWLQRDFGIYVASLFDTGQAARVLAY 176
Query: 242 ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
L YLL HFC V A+K +Q ADWRVRPL E L YAR DTHYLLYIYD +K+ +
Sbjct: 177 PSAGLAYLLSHFCSVKADKRWQLADWRVRPLSAEALHYARLDTHYLLYIYDCLKVLPDHL 236
Query: 302 PKE--SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 359
+E T + V +RS +C Q YEKEL SE SYL Y L +QLAV AGL
Sbjct: 237 QEEVPERGPATCMGVVLERSRLLCLQRYEKELFSETSYLDAYRRCQEPLTREQLAVFAGL 296
Query: 360 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 401
WRD AR DESTG+VL L+++AK+ P+ A LR +L
Sbjct: 297 YAWRDRTARERDESTGFVLSRALLVKLAKRAPSNARDLRAVL 338
>gi|426327783|ref|XP_004024690.1| PREDICTED: exosome component 10 [Gorilla gorilla gorilla]
Length = 909
Score = 301 bits (771), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 144/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 307 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 366
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 367 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 425
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++ M +
Sbjct: 426 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE---MWER 482
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K L ++ SYL +Y Q LN QQL L WRD
Sbjct: 483 GNGQPVQLQVVWQRSRDICLKKFIKPLFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 542
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 543 KTARREDESYGYVLPNHMMLKIAEELP 569
>gi|301774745|ref|XP_002922791.1| PREDICTED: exosome component 10-like isoform 1 [Ailuropoda
melanoleuca]
Length = 885
Score = 301 bits (771), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 144/265 (54%), Positives = 187/265 (70%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP V + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DTL+
Sbjct: 308 ETPCHFVSSLDELVELNEKLLTCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLE 367
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR ++ L E DP+ KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 368 LRSEMY-ILNESLTDPSIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSL 426
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L E
Sbjct: 427 DHLLKLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWERGNEQP 486
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
L ++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 487 ---VQLQVAWQRSRDICLKKFAKPIFTDESYLELYRKQKRHLNTQQLTAFQLLFAWRDKT 543
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 544 ARREDESYGYVLPNHMMLKIAEELP 568
>gi|281349256|gb|EFB24840.1| hypothetical protein PANDA_011805 [Ailuropoda melanoleuca]
Length = 834
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 144/265 (54%), Positives = 187/265 (70%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP V + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DTL+
Sbjct: 285 ETPCHFVSSLDELVELNEKLLTCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR ++ L E DP+ KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 345 LRSEMY-ILNESLTDPSIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L E
Sbjct: 404 DHLLKLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWERGNEQP 463
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
L ++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 464 ---VQLQVAWQRSRDICLKKFAKPIFTDESYLELYRKQKRHLNTQQLTAFQLLFAWRDKT 520
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 521 ARREDESYGYVLPNHMMLKIAEELP 545
>gi|348571395|ref|XP_003471481.1| PREDICTED: exosome component 10-like isoform 2 [Cavia porcellus]
Length = 860
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 147/267 (55%), Positives = 189/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP V + +L EL KL +EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDT
Sbjct: 283 VEETPCHFVSSLDELVELNEKLLRCEEFAVDLEHHSYRSFLGLTCLMQISTRTEDFLVDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR ++ L E +P KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSEMY-ILNESLTNPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +CGV +NK+YQ ADWRVRPLP+EML YAR+DTHYLLYIYD M++ L E
Sbjct: 402 SLDHLLRLYCGVESNKQYQLADWRVRPLPEEMLSYARDDTHYLLYIYDKMRLDLWERGNE 461
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L WRD
Sbjct: 462 QP---VQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|403289992|ref|XP_003936119.1| PREDICTED: exosome component 10 [Saimiri boliviensis boliviensis]
Length = 884
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 144/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 281 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 340
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 341 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 399
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 400 SLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELW---ER 456
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
S L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 457 SNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 516
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 517 KTARREDESYGYVLPNHMMLKIAEELP 543
>gi|395841111|ref|XP_003793392.1| PREDICTED: exosome component 10 [Otolemur garnettii]
Length = 881
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 147/271 (54%), Positives = 190/271 (70%), Gaps = 12/271 (4%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP V + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDFV+DT
Sbjct: 278 IEETPCHFVSSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFVIDT 337
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E F DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 338 LELRSDLY-ILNESFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 396
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL----SS 300
SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L
Sbjct: 397 SLDHLLKLYCNVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWERGGG 456
Query: 301 MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 360
P +S+ V++RS D+C + + K + ++ SYL +Y Q LN QQL L
Sbjct: 457 RPVQSQ-------VVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLF 509
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
WRD AR +DES GYVLPN +++IA++LP
Sbjct: 510 AWRDKTARREDESYGYVLPNHMMLKIAEELP 540
>gi|12856957|dbj|BAB30844.1| unnamed protein product [Mus musculus]
Length = 705
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 188/265 (70%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP LV + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 262 ETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 321
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 322 LRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSL 380
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 381 DHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELW---ERGN 437
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
+ L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L WRD
Sbjct: 438 HQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDKT 497
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 498 ARREDESYGYVLPNHMMLKIAEELP 522
>gi|338722160|ref|XP_003364495.1| PREDICTED: exosome component 10 isoform 2 [Equus caballus]
Length = 861
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 147/267 (55%), Positives = 187/267 (70%), Gaps = 8/267 (2%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP V + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTR EDF+VDTL+
Sbjct: 285 ETPCHFVSSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRREDFIVDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E F DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 345 LRSDMY-ILNESFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L
Sbjct: 404 DHLLKRYCSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELW-----ER 458
Query: 307 NSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
+D P L V++RS DVC + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 459 GNDQPVQLQVVWQRSRDVCLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|119592083|gb|EAW71677.1| exosome component 10, isoform CRA_a [Homo sapiens]
Length = 899
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 307 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 366
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 367 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 425
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++ M +
Sbjct: 426 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE---MWER 482
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 483 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 542
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 543 KTARREDESYGYVLPNHMMLKIAEELP 569
>gi|402852919|ref|XP_003891154.1| PREDICTED: exosome component 10 [Papio anubis]
Length = 844
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 243 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 302
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 303 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 361
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 362 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELW---ER 418
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 419 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 478
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 479 KTARREDESYGYVLPNHMMLKIAEELP 505
>gi|149695529|ref|XP_001492550.1| PREDICTED: exosome component 10 isoform 1 [Equus caballus]
Length = 886
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 147/267 (55%), Positives = 187/267 (70%), Gaps = 8/267 (2%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP V + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTR EDF+VDTL+
Sbjct: 285 ETPCHFVSSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRREDFIVDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E F DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 345 LRSDMY-ILNESFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L
Sbjct: 404 DHLLKRYCSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELW-----ER 458
Query: 307 NSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
+D P L V++RS DVC + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 459 GNDQPVQLQVVWQRSRDVCLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|410215484|gb|JAA04961.1| exosome component 10 [Pan troglodytes]
Length = 890
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 283 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++ M +
Sbjct: 402 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE---MWER 458
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 459 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|332807618|ref|XP_001136533.2| PREDICTED: exosome component 10 isoform 4 [Pan troglodytes]
Length = 909
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 307 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 366
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 367 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 425
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++ M +
Sbjct: 426 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE---MWER 482
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 483 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 542
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 543 KTARREDESYGYVLPNHMMLKIAEELP 569
>gi|397503016|ref|XP_003822132.1| PREDICTED: exosome component 10 [Pan paniscus]
Length = 909
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 307 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 366
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 367 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 425
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++ M +
Sbjct: 426 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE---MWER 482
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 483 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 542
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 543 KTARREDESYGYVLPNHMMLKIAEELP 569
>gi|410256430|gb|JAA16182.1| exosome component 10 [Pan troglodytes]
Length = 890
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 283 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++ M +
Sbjct: 402 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE---MWER 458
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 459 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|355744909|gb|EHH49534.1| hypothetical protein EGM_00210 [Macaca fascicularis]
Length = 887
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 307 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 366
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 367 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 425
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 426 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELW---ER 482
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 483 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 542
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 543 KTARREDESYGYVLPNHMMLKIAEELP 569
>gi|119592084|gb|EAW71678.1| exosome component 10, isoform CRA_b [Homo sapiens]
Length = 884
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 307 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 366
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 367 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 425
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++ M +
Sbjct: 426 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE---MWER 482
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 483 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 542
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 543 KTARREDESYGYVLPNHMMLKIAEELP 569
>gi|410215482|gb|JAA04960.1| exosome component 10 [Pan troglodytes]
gi|410256428|gb|JAA16181.1| exosome component 10 [Pan troglodytes]
gi|410289248|gb|JAA23224.1| exosome component 10 [Pan troglodytes]
Length = 885
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 283 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++ M +
Sbjct: 402 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE---MWER 458
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 459 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|108997029|ref|XP_001103741.1| PREDICTED: exosome component 10-like isoform 4 [Macaca mulatta]
gi|355557539|gb|EHH14319.1| hypothetical protein EGK_00224 [Macaca mulatta]
Length = 884
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 283 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 402 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELW---ER 458
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 459 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|50301240|ref|NP_001001998.1| exosome component 10 isoform 1 [Homo sapiens]
gi|8928564|sp|Q01780.2|EXOSX_HUMAN RecName: Full=Exosome component 10; AltName: Full=Autoantigen
PM/Scl 2; AltName: Full=P100 polymyositis-scleroderma
overlap syndrome-associated autoantigen; AltName:
Full=Polymyositis/scleroderma autoantigen 100 kDa;
Short=PM/Scl-100; AltName: Full=Polymyositis/scleroderma
autoantigen 2
gi|35555|emb|CAA46904.1| PM/Scl 100kD nucleolar protein [Homo sapiens]
gi|25140242|gb|AAH39901.1| Exosome component 10 [Homo sapiens]
gi|49257470|gb|AAH73788.1| Exosome component 10 [Homo sapiens]
gi|119592085|gb|EAW71679.1| exosome component 10, isoform CRA_c [Homo sapiens]
gi|190690525|gb|ACE87037.1| exosome component 10 protein [synthetic construct]
gi|190691893|gb|ACE87721.1| exosome component 10 protein [synthetic construct]
gi|261858988|dbj|BAI46016.1| exosome component 10 [synthetic construct]
Length = 885
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 283 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++ M +
Sbjct: 402 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE---MWER 458
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 459 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|297282176|ref|XP_001103657.2| PREDICTED: exosome component 10-like isoform 3 [Macaca mulatta]
Length = 884
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 307 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 366
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 367 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 425
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 426 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELW---ER 482
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 483 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 542
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 543 KTARREDESYGYVLPNHMMLKIAEELP 569
>gi|380813852|gb|AFE78800.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|383419271|gb|AFH32849.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|384947746|gb|AFI37478.1| exosome component 10 isoform 1 [Macaca mulatta]
Length = 884
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 283 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 402 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELW---ER 458
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 459 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|426239734|ref|XP_004013774.1| PREDICTED: exosome component 10 isoform 1 [Ovis aries]
Length = 887
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 185/265 (69%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP V + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 285 ETPCHFVSTLDELVELNEKLLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 345 LRSDMY-VLNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L E
Sbjct: 404 DHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWERGNEQP 463
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
T L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 464 ---TQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKT 520
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 521 ARREDESYGYVLPNHMMLKIAEELP 545
>gi|410350403|gb|JAA41805.1| exosome component 10 [Pan troglodytes]
Length = 885
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 283 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++ M +
Sbjct: 402 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE---MWER 458
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 459 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|343962561|dbj|BAK62868.1| exosome component 10 [Pan troglodytes]
Length = 885
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 283 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++ M +
Sbjct: 402 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE---MWER 458
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 459 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|4505917|ref|NP_002676.1| exosome component 10 isoform 2 [Homo sapiens]
gi|179283|gb|AAB59352.1| PM-Scl autoantigen [Homo sapiens]
gi|11136976|emb|CAC15569.1| PM-scl autoantigen [Homo sapiens]
Length = 860
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 283 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++ M +
Sbjct: 402 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE---MWER 458
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 459 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|432864718|ref|XP_004070425.1| PREDICTED: exosome component 10-like [Oryzias latipes]
Length = 890
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 152/301 (50%), Positives = 197/301 (65%), Gaps = 15/301 (4%)
Query: 97 FIHP----LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEF 152
F HP LD+L+V D + + E + +T ++ ++DL EL KL + EF
Sbjct: 254 FSHPYQYELDHLTVPDSL---LSKPEPQMYKPIAETKLSFIDSLEDLVELNEKLCKLSEF 310
Query: 153 AVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGAD 212
AVDLEH+ YRSFLGLTCLMQISTR EDF++DTL+LR ++ L E F DPT KV HGAD
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRDEDFIIDTLELRSEMY-ILNEAFTDPTIVKVFHGAD 369
Query: 213 RDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 272
DI WLQRDFG+Y+ N+FDT Q SR L L RNSL++LL HFC V+++K YQ ADWR+RPL
Sbjct: 370 SDIEWLQRDFGLYVVNLFDTHQGSRALHLARNSLDHLLRHFCNVDSDKRYQLADWRIRPL 429
Query: 273 PDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKE 330
PDEM++YAR DTHYLLYIYD ++ +L N P L V+ +S D+ Y K
Sbjct: 430 PDEMVQYARTDTHYLLYIYDCVRAQLL-----DSNHGQPGLLQSVWNKSKDISLTKYMKP 484
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+ +E+SYL + Q N QQL L WRD +AR +DESTGY LP +I+I+++L
Sbjct: 485 VFTEDSYLEVLRKQKRSFNTQQLTAFRLLFAWRDKLARQEDESTGYTLPIHMMIKISEEL 544
Query: 391 P 391
P
Sbjct: 545 P 545
>gi|380813854|gb|AFE78801.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|383419273|gb|AFH32850.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|384947748|gb|AFI37479.1| exosome component 10 isoform 1 [Macaca mulatta]
Length = 882
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 283 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 402 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELW---ER 458
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 459 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|440797552|gb|ELR18636.1| 3'5' exonuclease domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 929
Score = 299 bits (766), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 164/375 (43%), Positives = 214/375 (57%), Gaps = 41/375 (10%)
Query: 60 FHVPTITKPQEEYKIVVNNANQPFQ------------------------HVWLQ-----K 90
FH + +PQ ++K V+N + P+ H+ Q
Sbjct: 151 FHGSNVLRPQLQFKDPVDNTHTPWMPVPYRNGQRPTPAPPSALPKDLETHMSTQLGITLP 210
Query: 91 SEDSGRFIHPL-DNLSVLDFVDKDIGDVEAVKPPSLEQTPFKL-------VEEVKDLKEL 142
E + HP + L+ L+++ +G LE PF V VKDLK++
Sbjct: 211 EESFSMYPHPFYEQLANLEYLPSQLGSCIEQPFQPLENIPFTFTPDIINQVATVKDLKDV 270
Query: 143 AAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDP 202
A KL + EFAVDLEH+ YR+F G TCLMQISTRTEDF+VDTL LR + L F D
Sbjct: 271 AQKLDAQTEFAVDLEHHSYRTFQGFTCLMQISTRTEDFIVDTLALREHMH-LLSSSFHDA 329
Query: 203 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 262
KV HG+D DI+WLQRDFG+Y+ NMFDTGQA RVL+ SL YLL H CGV A+K+Y
Sbjct: 330 NIVKVFHGSDSDIMWLQRDFGLYVINMFDTGQACRVLEYPSFSLAYLLRHHCGVLADKKY 389
Query: 263 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 322
Q ADWR+RPLP+EML+YAREDTHYLL+IYD ++ +L S N + V RS ++
Sbjct: 390 QLADWRIRPLPEEMLKYAREDTHYLLFIYDKLRNELIGRANMSNNL---ILAVLNRSREL 446
Query: 323 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 382
C YEK L + S+L +Y N QQ+ V A + +WRD +AR +DES YVLPN
Sbjct: 447 CLLQYEKPLWTPTSHLSLYNRFNYVFNEQQMRVFAAVYKWRDTVAREEDESYRYVLPNHM 506
Query: 383 LIEIAKQLPTTAAKL 397
L IA+ +PT+ L
Sbjct: 507 LFHIAELVPTSVPAL 521
>gi|426239736|ref|XP_004013775.1| PREDICTED: exosome component 10 isoform 2 [Ovis aries]
Length = 862
Score = 299 bits (766), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 185/265 (69%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP V + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 285 ETPCHFVSTLDELVELNEKLLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 345 LRSDMY-VLNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L E
Sbjct: 404 DHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWERGNEQP 463
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
T L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 464 ---TQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKT 520
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 521 ARREDESYGYVLPNHMMLKIAEELP 545
>gi|335290494|ref|XP_003356194.1| PREDICTED: exosome component 10 isoform 2 [Sus scrofa]
Length = 861
Score = 299 bits (765), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 145/267 (54%), Positives = 185/267 (69%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP V + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 283 VEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M++ L E
Sbjct: 402 SLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLALWERGNE 461
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 462 QPAQ---LQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNTQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|335290492|ref|XP_003127631.2| PREDICTED: exosome component 10 isoform 1 [Sus scrofa]
Length = 886
Score = 299 bits (765), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 145/267 (54%), Positives = 185/267 (69%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP V + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 283 VEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M++ L E
Sbjct: 402 SLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLALWERGNE 461
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 462 QPAQ---LQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNTQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|210147550|ref|NP_957383.2| exosome component 10 [Danio rerio]
Length = 899
Score = 298 bits (764), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 176/446 (39%), Positives = 250/446 (56%), Gaps = 39/446 (8%)
Query: 15 NGEGDGNEG-GFQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPFHV-----PTITKP 68
N +G G+ FQL+ KN ++ +K +D+ + S PF P KP
Sbjct: 161 NRKGGGSRAQTFQLLAAKNIQR---------PQLKFRDKVDNSNTPFLSKIFIKPNAVKP 211
Query: 69 QEEY------------KIVVNNANQPFQHVWLQKSEDSGRFIHP----LDNLSVLDFVDK 112
Y + V A F H K F HP LD+L + + + K
Sbjct: 212 LPSYFADKHIRKERPEDLDVPAALADFIHQQRTKEHVDDMFSHPYQYELDHLVMPENL-K 270
Query: 113 DIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQ 172
+V+ KP +++TP + + ++DL L KL EFAVDLEH+ YRSFLG+TCLMQ
Sbjct: 271 CKPEVQMYKP--IDETPCQFISTLEDLVALNEKLAKTTEFAVDLEHHSYRSFLGITCLMQ 328
Query: 173 ISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 232
ISTR EDF++DTL+LR ++ L E F DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 329 ISTREEDFIIDTLELRSEMY-ILNETFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 387
Query: 233 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 292
A+R L L RNSL++LL +C V+++K YQ ADWR+RPLPDEML+YA+ DTHYLLY+YD
Sbjct: 388 HHAARCLNLGRNSLDHLLKVYCDVSSDKRYQLADWRIRPLPDEMLKYAQADTHYLLYVYD 447
Query: 293 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 352
++ L T + +V+ +S D+ + Y K + +E+SY+ +Y Q N QQ
Sbjct: 448 RVRADLFD---GGNGQATLIQQVWTKSRDLSLKKYVKPIFTEDSYMELYRKQKKSFNTQQ 504
Query: 353 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 412
LA + WRD +AR +DESTGY+LPN +++IA +LP + + + +
Sbjct: 505 LAAFRLMYAWRDKLAREEDESTGYILPNHMMMKIADELPKEPQGIIACCNPTPPLVRQQI 564
Query: 413 GPVLSIIKNSMQN-AANFEVIAQKLK 437
+ +IK + + EV+AQK K
Sbjct: 565 NELHQLIKQARETPLLKAEVVAQKRK 590
>gi|431906334|gb|ELK10531.1| Exosome component 10 [Pteropus alecto]
Length = 883
Score = 298 bits (764), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 144/265 (54%), Positives = 185/265 (69%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP V + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 279 ETPCHFVSSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 338
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 339 LRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSL 397
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 398 DHLLKLYCNVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELW---ERGN 454
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 455 GQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKT 514
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 515 ARREDESYGYVLPNHMMLKIAEELP 539
>gi|126328718|ref|XP_001364197.1| PREDICTED: exosome component 10 isoform 1 [Monodelphis domestica]
Length = 861
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 151/299 (50%), Positives = 198/299 (66%), Gaps = 11/299 (3%)
Query: 97 FIHP----LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEF 152
F HP LD+ ++ D V + ++ KP + +TP V + L EL KL + +F
Sbjct: 230 FAHPYQYELDHFAIPDEVLQK-PQIQMYKP--VGETPCHFVTTLDALVELNEKLLNCKDF 286
Query: 153 AVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGAD 212
VDLEH+ YRSFLGLTCLMQISTRTEDF++DTL+LR + L E F DP+ KV HGAD
Sbjct: 287 GVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDLY-ILNESFTDPSIVKVFHGAD 345
Query: 213 RDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 272
DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPL
Sbjct: 346 MDIEWLQKDFGLYVVNMFDTHQAARILNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPL 405
Query: 273 PDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL 332
P+EM YAR DTHYLLYIYD M+ S + + L V++RS D+C + + K +
Sbjct: 406 PEEMFNYARHDTHYLLYIYDKMR---SDLWDRANGQPAQLQVVWQRSKDICLKRFIKPIF 462
Query: 333 SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
E+SYL +Y Q LN QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 463 MEDSYLELYRKQKKHLNTQQLTAFQLLYSWRDRTARREDESYGYVLPNHMMLKIAEELP 521
>gi|126328720|ref|XP_001364275.1| PREDICTED: exosome component 10 isoform 2 [Monodelphis domestica]
Length = 836
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 151/299 (50%), Positives = 198/299 (66%), Gaps = 11/299 (3%)
Query: 97 FIHP----LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEF 152
F HP LD+ ++ D V + ++ KP + +TP V + L EL KL + +F
Sbjct: 230 FAHPYQYELDHFAIPDEVLQK-PQIQMYKP--VGETPCHFVTTLDALVELNEKLLNCKDF 286
Query: 153 AVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGAD 212
VDLEH+ YRSFLGLTCLMQISTRTEDF++DTL+LR + L E F DP+ KV HGAD
Sbjct: 287 GVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDLY-ILNESFTDPSIVKVFHGAD 345
Query: 213 RDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 272
DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPL
Sbjct: 346 MDIEWLQKDFGLYVVNMFDTHQAARILNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPL 405
Query: 273 PDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL 332
P+EM YAR DTHYLLYIYD M+ S + + L V++RS D+C + + K +
Sbjct: 406 PEEMFNYARHDTHYLLYIYDKMR---SDLWDRANGQPAQLQVVWQRSKDICLKRFIKPIF 462
Query: 333 SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
E+SYL +Y Q LN QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 463 MEDSYLELYRKQKKHLNTQQLTAFQLLYSWRDRTARREDESYGYVLPNHMMLKIAEELP 521
>gi|427793373|gb|JAA62138.1| Putative exosome 3'-5' exoribonuclease complex subunit pm/scl-100
rrp6, partial [Rhipicephalus pulchellus]
Length = 911
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 168/392 (42%), Positives = 222/392 (56%), Gaps = 41/392 (10%)
Query: 30 GKNKKKGDIVGGSAPASVKVKDRKEKSKVP----FHV---PTITKPQEEYKIVVNNANQP 82
G KK D+V + A+ + K + FH+ +T+PQ +K V+N+N P
Sbjct: 150 GVKKKADDVVLVTVSANRPIHTSWNKKNLTKAAKFHLLAAKNVTRPQLNFKEKVDNSNTP 209
Query: 83 FQHVWLQKSEDSGRFIHPLDNLSVLDFVDKD-----------------------IGDVEA 119
F + K H L L++L + D E
Sbjct: 210 FVPILRDKP-------HSLKPLAILPESNSDGQESYGHPYEWEIEHFEPSPTQLKAPSEE 262
Query: 120 VKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTED 179
PP LE+TP LVE V LKE+ L E AVDLEH+ YRSF G TCLMQIS+RT+D
Sbjct: 263 RLPPPLEETPCTLVETVDQLKEMCEALSKETEIAVDLEHHSYRSFQGFTCLMQISSRTQD 322
Query: 180 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 239
++VDTL LR ++ L EVF DP KV HGAD D++WLQRDFG+YL +FDTGQA++VL
Sbjct: 323 YIVDTLALRHELQ-MLNEVFADPKILKVFHGADMDVLWLQRDFGLYLVGLFDTGQAAKVL 381
Query: 240 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
L SL +LL H+C + A+K++Q ADWR+RPLP EM+ YA+ DTHYLLYI D MK L+
Sbjct: 382 GLAHFSLAFLLKHYCQIEADKQFQLADWRIRPLPPEMVSYAQSDTHYLLYIMDCMKRDLA 441
Query: 300 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 359
E++N L V+ RS V + YEK E SY+ +Y N++QL + L
Sbjct: 442 DRSNENDNL---LRSVFDRSKQVALRCYEKPSYHEQSYMELYRKSRKTFNSRQLHALRHL 498
Query: 360 CEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
WRD AR +DESTGYVLPN ++EI++ LP
Sbjct: 499 YSWRDRTARNEDESTGYVLPNHMILEISEILP 530
>gi|410966022|ref|XP_003989537.1| PREDICTED: exosome component 10 isoform 2 [Felis catus]
Length = 862
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 143/265 (53%), Positives = 185/265 (69%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP V + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 285 ETPCHFVSSLDELVELNEKLLTCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 345 LRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +C V +NK++Q ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 404 DHLLKLYCNVESNKQFQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELW---ERGN 460
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 461 QQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKT 520
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 521 ARREDESYGYVLPNHMMLKIAEELP 545
>gi|410966020|ref|XP_003989536.1| PREDICTED: exosome component 10 isoform 1 [Felis catus]
Length = 887
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 143/265 (53%), Positives = 185/265 (69%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP V + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 285 ETPCHFVSSLDELVELNEKLLTCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 345 LRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +C V +NK++Q ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 404 DHLLKLYCNVESNKQFQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELW---ERGN 460
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 461 QQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKT 520
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 521 ARREDESYGYVLPNHMMLKIAEELP 545
>gi|291414300|ref|XP_002723398.1| PREDICTED: exosome component 10 [Oryctolagus cuniculus]
Length = 886
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 142/267 (53%), Positives = 189/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+ +TP + + L EL KL + EFAVDLEH+ YRSFLGLTCLMQ+STRTEDF++DT
Sbjct: 280 VHETPCHFISSLDKLVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQVSTRTEDFIIDT 339
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR ++ L E +PT KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 340 LELRSEMY-LLNESLTNPTIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 398
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V+++K+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L E
Sbjct: 399 SLDHLLKLYCSVDSDKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELWERGNE 458
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
T L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 459 QP---TQLQVVWQRSRDLCLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 515
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 516 KTARREDESYGYVLPNHMMLKIAEELP 542
>gi|327291874|ref|XP_003230645.1| PREDICTED: exosome component 10-like, partial [Anolis carolinensis]
Length = 329
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 154/300 (51%), Positives = 207/300 (69%), Gaps = 13/300 (4%)
Query: 97 FIHP----LDNLSV-LDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDE 151
F HP L++ SV +F+ K ++ +P S +TP + + +L EL+ KL++ E
Sbjct: 38 FAHPYQYELEHFSVPEEFLGK--PHIQMFRPVS--ETPCHFISTLDELVELSEKLRTCKE 93
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
FA+DLEH+ YRSFLGLTCL+QISTRTEDF++D L+LR + L E F DP KV+HGA
Sbjct: 94 FALDLEHHSYRSFLGLTCLVQISTRTEDFILDALELRGDLY-VLNETFTDPAIIKVLHGA 152
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRP 271
D D+ WLQRDFG+YL N+FDT QA+R L L R+SL++LL +C V+ANK+YQ ADWR+RP
Sbjct: 153 DSDVEWLQRDFGLYLVNVFDTHQAARQLSLGRHSLDHLLKLYCNVDANKQYQLADWRIRP 212
Query: 272 LPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL 331
LP+EML YAR+DTHYLLYIYD ++ +L E L V++RS D+C + Y K +
Sbjct: 213 LPEEMLNYARDDTHYLLYIYDRVRTELWERGNELP---AQLQVVWQRSRDICLKKYLKPI 269
Query: 332 LSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ENSYL +Y Q LN QQ+ L WRD +AR +DESTGYVLPN L++I+++LP
Sbjct: 270 FTENSYLELYRKQKKHLNTQQMTAFKLLFAWRDKMARQEDESTGYVLPNHMLLKISEELP 329
>gi|296206702|ref|XP_002750328.1| PREDICTED: exosome component 10 isoform 2 [Callithrix jacchus]
Length = 885
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 142/267 (53%), Positives = 187/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTR EDF++DT
Sbjct: 283 VEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRMEDFIIDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E +P KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTNPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L
Sbjct: 402 SLDHLLKLYCNVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWD---R 458
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
+ L V++RS D+C + + K + ++ SYL +Y Q LN QQLA L WRD
Sbjct: 459 GNSQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLAAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|67970274|dbj|BAE01480.1| unnamed protein product [Macaca fascicularis]
Length = 673
Score = 296 bits (758), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 283 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 402 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELW---ER 458
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 459 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|194383644|dbj|BAG59180.1| unnamed protein product [Homo sapiens]
Length = 679
Score = 296 bits (758), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 283 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++ M +
Sbjct: 402 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE---MWER 458
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 459 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|296206700|ref|XP_002750327.1| PREDICTED: exosome component 10 isoform 1 [Callithrix jacchus]
Length = 860
Score = 296 bits (758), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 142/267 (53%), Positives = 187/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTR EDF++DT
Sbjct: 283 VEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRMEDFIIDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E +P KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTNPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L
Sbjct: 402 SLDHLLKLYCNVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWD---R 458
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
+ L V++RS D+C + + K + ++ SYL +Y Q LN QQLA L WRD
Sbjct: 459 GNSQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLAAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>gi|260790959|ref|XP_002590508.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
gi|229275702|gb|EEN46519.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
Length = 832
Score = 296 bits (757), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 165/371 (44%), Positives = 215/371 (57%), Gaps = 43/371 (11%)
Query: 60 FHVPTITKPQEEYKIVVNNANQPF---------QHVWLQKSEDSGRFIHPLDNLSVL-DF 109
H I +PQ ++K ++N+N PF H L K + R LD + L DF
Sbjct: 164 LHARNIERPQLKFKDKIDNSNTPFIPIIRHKPNAHRPLPKYDQQKRHPEDLDVPAALADF 223
Query: 110 VDK----------DIG------DVEAVKP-----------PS--LEQTPFKLVEEVKDLK 140
+ + D+ ++E +P PS ++ TP LV +++L
Sbjct: 224 IHRQREVHQGQPADLTAHPYQYELEHFQPTPQQLLKKQPQPSKPIDATPLTLVTTLEELM 283
Query: 141 ELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFK 200
++ KL EFAVDLEH+ YRSF G TCLMQ+STR D++VDTL LR + L + F
Sbjct: 284 DMNDKLTMCSEFAVDLEHHSYRSFQGFTCLMQVSTRDHDYIVDTLALRADLH-VLNDTFT 342
Query: 201 DPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 260
DP KV HGAD DI WLQRDFG+Y+ NMFDTGQAS VL L R+SL YLL +C V +K
Sbjct: 343 DPKVVKVFHGADMDIQWLQRDFGVYVVNMFDTGQASHVLGLPRHSLAYLLKTYCDVEPDK 402
Query: 261 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSY 320
+YQ ADWR+RPLP EM +YAREDTHYLL+IYD M+ S + N L +RS
Sbjct: 403 KYQLADWRIRPLPSEMTQYAREDTHYLLHIYDCMR---SELLDRGNNEANLLHNTLERSR 459
Query: 321 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 380
VC Q Y+K L +E+SYL++ N+QQL V + WRD IAR +DESTGYVLPN
Sbjct: 460 QVCLQRYQKLLYTEDSYLNLLNKHKKTFNSQQLHAVRLVYRWRDTIARQEDESTGYVLPN 519
Query: 381 RTLIEIAKQLP 391
L+ +A+ LP
Sbjct: 520 HMLLVLAETLP 530
>gi|156121019|ref|NP_001095656.1| exosome component 10 [Bos taurus]
gi|154757487|gb|AAI51675.1| EXOSC10 protein [Bos taurus]
gi|296479174|tpg|DAA21289.1| TPA: exosome component 10 [Bos taurus]
Length = 702
Score = 296 bits (757), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 145/265 (54%), Positives = 185/265 (69%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP V + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DTL+
Sbjct: 285 ETPCHFVSTLDELVELNEKLLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 345 LRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L E
Sbjct: 404 DHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWERGNEQP 463
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
T L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 464 ---TQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKT 520
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 521 ARREDESYGYVLPNHMMLKIAEELP 545
>gi|348514838|ref|XP_003444947.1| PREDICTED: exosome component 10 [Oreochromis niloticus]
Length = 892
Score = 295 bits (756), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 165/379 (43%), Positives = 223/379 (58%), Gaps = 57/379 (15%)
Query: 60 FHVPTITKPQEEYKIVVNNANQPF--------------------QHVWLQKSED------ 93
H IT+PQ ++K V+N+N PF + + ++ ED
Sbjct: 177 LHAKNITRPQLKFKEKVDNSNTPFIPKIFIKPNAVKPLPSYFTNKQMRKERPEDLDVPAA 236
Query: 94 --------------SGRFIHP----LDNLSVL-DFVDKDIGDVEAVKPPSLEQTPFKLVE 134
F HP LD+L++ + + K + + KP + +T V+
Sbjct: 237 LADFIHQQRTQEHVDDMFAHPYQYELDHLTIPENLLSK--PEPQMYKP--VAETKLSFVD 292
Query: 135 EVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPY 194
++DL L KL + EFAVDLEH+ YRSFLGLTCLMQISTR EDF++DTL+LR ++
Sbjct: 293 TLEDLVALNEKLCKLSEFAVDLEHHSYRSFLGLTCLMQISTRGEDFIIDTLELRSEMY-I 351
Query: 195 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 254
L E F DP+ KV HGAD DI WLQRDFG+Y+ N+FDT QASR L L R+SL++LL HFC
Sbjct: 352 LNEAFTDPSIVKVFHGADSDIEWLQRDFGLYVVNLFDTHQASRALNLARHSLDHLLKHFC 411
Query: 255 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP--L 312
V+++K YQ ADWRVRPLPDEM++YAR DTHYLLYIYD ++++L N P L
Sbjct: 412 SVDSDKRYQLADWRVRPLPDEMVQYARTDTHYLLYIYDCVRVQLLDF-----NHGQPGLL 466
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
V+ +S + + Y K + +E SYL + Q N QQL L WRD +AR +DE
Sbjct: 467 QSVWNKSRSISLKKYVKPIYTEESYLELQRKQKKSFNTQQLTAFRLLFAWRDKLARQEDE 526
Query: 373 STGYVLPNRTLIEIAKQLP 391
STGYVLP +I+I+++LP
Sbjct: 527 STGYVLPTHMMIKISEELP 545
>gi|221121078|ref|XP_002157951.1| PREDICTED: exosome component 10-like [Hydra magnipapillata]
Length = 758
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/341 (46%), Positives = 209/341 (61%), Gaps = 18/341 (5%)
Query: 65 ITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFI-------------HPLD-NLSVLDFV 110
I +PQ ++ ++N+N+PF QK R I HP LS L+
Sbjct: 162 IQRPQLKFINKIDNSNKPFVPYIKQKHNAIKRDILSDFRTEIEDFESHPYAYELSKLEPH 221
Query: 111 DKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCL 170
D + + E +K P L+ T ++ + L +L KLK V E AVDLEH+ YRSF G CL
Sbjct: 222 DWQLEEAEPLKYPMLDTTNLTYIDTDEGLNDLINKLKKVKEIAVDLEHHSYRSFQGFLCL 281
Query: 171 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 230
MQISTR EDF++DTL LR ++ + E+F DP KVMHGAD DI WLQRDFG+Y+ NMF
Sbjct: 282 MQISTRFEDFIIDTLALREEMYK-INEIFSDPNILKVMHGADSDIGWLQRDFGVYVVNMF 340
Query: 231 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 290
DTGQA+R L +R SL YLL +C V+A K+YQ ADWR+RP+P EM+ YA+EDTHYLLY+
Sbjct: 341 DTGQAARTLHEDRFSLAYLLSKYCNVDAQKQYQLADWRIRPIPKEMILYAQEDTHYLLYV 400
Query: 291 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 350
YDI++ +L + ++N L VY +S +C +Y+K L + +SY+ Y LN
Sbjct: 401 YDILRNQLLNKGNANKNL---LKSVYSKSTSICATMYQKPLFNNDSYIATYEKYRGRLNP 457
Query: 351 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
QQL L EWRD AR +DES Y LPN L +IA+ LP
Sbjct: 458 QQLECFRLLFEWRDKTAREEDESIVYTLPNHMLFQIAENLP 498
>gi|339717671|pdb|3SAF|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
gi|339717672|pdb|3SAF|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
gi|339717673|pdb|3SAG|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
gi|339717674|pdb|3SAG|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
Length = 428
Score = 293 bits (750), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 142/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAV+LEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 105 IEETPCHFISSLDELVELNEKLLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTEDFIIDT 164
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 165 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 223
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++ M +
Sbjct: 224 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE---MWER 280
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 281 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 340
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 341 KTARREDESYGYVLPNHMMLKIAEELP 367
>gi|417405124|gb|JAA49287.1| Putative exosome 3'-5' exoribonuclease complex subunit pm/scl-100
rrp6 [Desmodus rotundus]
Length = 888
Score = 291 bits (746), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 141/265 (53%), Positives = 184/265 (69%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP + V + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDFV+DTL+
Sbjct: 285 ETPCRFVSSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFVIDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E P KV HGAD D+ WLQ+DFG+Y+ NMFDT QA+ +L L R+SL
Sbjct: 345 LRSDMY-ILNESLTHPAIVKVFHGADSDVEWLQKDFGLYVVNMFDTHQAACLLNLGRHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 404 DHLLKLYCDVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELW---ERGN 460
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 461 GQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFKLLFAWRDKT 520
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 521 ARREDESYGYVLPNHMMLKIAEELP 545
>gi|346467363|gb|AEO33526.1| hypothetical protein [Amblyomma maculatum]
Length = 656
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 143/270 (52%), Positives = 183/270 (67%), Gaps = 4/270 (1%)
Query: 122 PPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV 181
PP LE+TP+ LVE + L++L L E AVDLEH+ YR+F G+TCLMQISTR+ D+V
Sbjct: 29 PPPLEETPYTLVETPQQLQDLCTALSKETEIAVDLEHHSYRTFQGITCLMQISTRSHDYV 88
Query: 182 VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL 241
VDTLKLR ++ L EVF +P KV+HGAD D++WLQRDFG+YL +FDTGQA+RVL L
Sbjct: 89 VDTLKLRHELQ-VLNEVFANPKIIKVLHGADMDVLWLQRDFGLYLVGLFDTGQAARVLGL 147
Query: 242 ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
SL +LL H+C V A+K++Q ADWR+RPLP M+ YAR DTHYLLYI D +K S +
Sbjct: 148 AHFSLAFLLRHYCRVEADKQFQLADWRIRPLPAVMIHYARSDTHYLLYIMDCLK---SDL 204
Query: 302 PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCE 361
S +D L V+ RS V + YEK +E SYL +Y N +QL + L
Sbjct: 205 ADRSNKNDNLLRSVFDRSKQVALKRYEKPSYNEQSYLELYRKSRKTFNTRQLHALRHLYA 264
Query: 362 WRDVIARADDESTGYVLPNRTLIEIAKQLP 391
WRD IAR +DESTGYVLP ++EI++ LP
Sbjct: 265 WRDHIARVEDESTGYVLPKHMILEISEILP 294
>gi|339717675|pdb|3SAH|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
gi|339717676|pdb|3SAH|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
Length = 428
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 142/267 (53%), Positives = 187/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 105 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 164
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 165 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 223
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML AR+DTHYLLYIYD M+++ M +
Sbjct: 224 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSAARDDTHYLLYIYDKMRLE---MWER 280
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 281 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 340
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 341 KTARREDESYGYVLPNHMMLKIAEELP 367
>gi|281206812|gb|EFA80996.1| 3'-5' exonuclease [Polysphondylium pallidum PN500]
Length = 1011
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 167/412 (40%), Positives = 232/412 (56%), Gaps = 19/412 (4%)
Query: 20 GNEGGFQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPFHVPTITKPQEEYKI--VVN 77
G F + YG N ++ +K +D + S PF KP + +
Sbjct: 168 GKSNEFNMFYGVNIQR---------PQLKFEDPIDNSNFPFLPKIQEKPNSMVPLDALFE 218
Query: 78 NANQPFQH--VWLQKSEDSGRFIHPLD-NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVE 134
+ H V K ++ F HP + L+ L F+ K I L++T + V+
Sbjct: 219 KSRVEIVHGKVIRTKEQEKIVFPHPYEYELNHLQFLAKQIQSCRENLYKGLDETAYTWVD 278
Query: 135 EVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPY 194
V L L KL V+EFAVDLE + YRSF G CLMQ+STRTEDF+VDTL LR +
Sbjct: 279 RVDQLAALTEKLNQVEEFAVDLEAHNYRSFQGFVCLMQVSTRTEDFIVDTLVLRSHMK-M 337
Query: 195 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 254
L F +P KV+HG++ D+ WLQRDFGIY+ NMFDTGQASR+L+ SL +LL +C
Sbjct: 338 LNVPFTNPKIVKVLHGSESDVKWLQRDFGIYIVNMFDTGQASRILEYPSASLAFLLRFYC 397
Query: 255 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 314
GV+ANK++Q ADWR+RP+P+EM++YAREDTHYLLYIYD ++ +L K + N L E
Sbjct: 398 GVDANKKFQLADWRIRPVPEEMIKYAREDTHYLLYIYDRLRNELVLKGKSTNNY---LME 454
Query: 315 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 374
V +RS ++C YEK++L ENS+ G N QL + L WR+ +AR DDES
Sbjct: 455 VLRRSKEICLIKYEKDILDENSHAEYLKKNGITYNPAQLKIFRLLYNWREKVARDDDESV 514
Query: 375 GYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLS-IIKNSMQN 425
Y+LPN + I ++ PTT L YI++Y +L I+++ + N
Sbjct: 515 RYILPNSMMQLIVEKQPTTITDLLACCTPIPPYIKQYGHELLQDILRSRISN 566
>gi|196007028|ref|XP_002113380.1| hypothetical protein TRIADDRAFT_27020 [Trichoplax adhaerens]
gi|190583784|gb|EDV23854.1| hypothetical protein TRIADDRAFT_27020, partial [Trichoplax
adhaerens]
Length = 535
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 144/304 (47%), Positives = 196/304 (64%), Gaps = 5/304 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
L++TP ++ E +LK+L LKSV EFAVDLEH+ YRS+ G CLMQISTR D++VDT
Sbjct: 234 LDETPLNVITEKDELKDLLETLKSVTEFAVDLEHHSYRSYQGFVCLMQISTRDADYIVDT 293
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L LR ++ L EVF DP K++HGAD DI+WLQRDF IY+ NMFDTGQA+R+L+ R
Sbjct: 294 LALRSELWT-LNEVFSDPKIIKILHGADSDIIWLQRDFAIYVVNMFDTGQAARLLQFPRF 352
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL YLL +C V ANK Q ADWR+RPLP EM++YAREDTHYLLYI+D++ +L +
Sbjct: 353 SLSYLLLKYCNVTANKGLQLADWRIRPLPQEMVQYAREDTHYLLYIFDVLTNELMN---- 408
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
+ S L + RS +C + YEK + ++ SYL++ N QQ A L WRD
Sbjct: 409 ASTSVDLLKSNFDRSKKICLRTYEKPVFNKKSYLNLLYKHKGRFNHQQNYAFAKLYSWRD 468
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 424
+AR +DES +VLPN L++IA+ LP + + + +Y+G + IIK + +
Sbjct: 469 SVARDNDESANFVLPNHMLLQIAENLPREPQGILACCNPIPTLVRQYIGDIHQIIKKARE 528
Query: 425 NAAN 428
+ N
Sbjct: 529 RSIN 532
>gi|330802281|ref|XP_003289147.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum]
gi|325080770|gb|EGC34311.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum]
Length = 1045
Score = 288 bits (738), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 154/370 (41%), Positives = 222/370 (60%), Gaps = 33/370 (8%)
Query: 60 FHVPTITKPQEEYKIVVNNANQPF--------------QHVWLQ--------------KS 91
F+ I +PQ +++ V+N+N PF ++L+ K
Sbjct: 152 FYGSNIARPQLKFEDPVDNSNFPFLPKIKTKPNSLVDLDPIFLKSQPKEILYGKIIRDKE 211
Query: 92 EDSGRFIHPLD-NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVD 150
+++ F HP + ++ + +K + + LE+TP+ ++ V+ L+EL KL V+
Sbjct: 212 QETLIFPHPYEYEINNFKYTEKQNQSCKEILSRGLEETPYTWIDSVRQLEELCDKLSHVE 271
Query: 151 EFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
EFA+DLEH+ YRS+ G CLMQISTR EDF++DTL LR + L V +P KV+HG
Sbjct: 272 EFAMDLEHHNYRSYQGFVCLMQISTRGEDFIIDTLALRSHIH-MLNNVTTNPAIVKVLHG 330
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
+D DI WLQRDFGIY+ NMFDTGQASRVL+ SL +LL +FC V+ANK+YQ ADWR+R
Sbjct: 331 SDSDIKWLQRDFGIYIVNMFDTGQASRVLEYPSASLAFLLKYFCAVDANKKYQLADWRIR 390
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
+P+EM++YAREDTHYLLYIYD ++ +L + K S N L EV +RS ++ YEKE
Sbjct: 391 KIPEEMIKYAREDTHYLLYIYDRLRNELINKGKGSNNL---LLEVLRRSRELALLKYEKE 447
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+L +N+++ N QL V+ + WR+ +AR +DES YVLPN+ + I +
Sbjct: 448 ILDDNTHIQFAKKLNLQYNPVQLNVLKVIYHWREGLAREEDESVRYVLPNQMMFSIIENQ 507
Query: 391 PTTAAKLRRL 400
P T +L L
Sbjct: 508 PVTVQELIAL 517
>gi|290982318|ref|XP_002673877.1| 3'-5' exonuclease and HRDC domain-containing protein [Naegleria
gruberi]
gi|284087464|gb|EFC41133.1| 3'-5' exonuclease and HRDC domain-containing protein [Naegleria
gruberi]
Length = 956
Score = 288 bits (737), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 151/331 (45%), Positives = 203/331 (61%), Gaps = 5/331 (1%)
Query: 99 HP-LDNLSVLDFVDKDIGDVE-AVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDL 156
HP L L L F+ E A+ LE +P + V+DL +LA L+ D FA+DL
Sbjct: 309 HPYLPELLSLQFMKSQTTPPEKAISYAPLENSPCTWISTVEDLHKLATILEGQDAFAIDL 368
Query: 157 EHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIV 216
E + YRSF G CLMQISTR+EDF++DTL+LR + L F P KVMHG+D DI+
Sbjct: 369 EQHSYRSFQGFVCLMQISTRSEDFLIDTLELRQHMH-ILNSSFTHPKIVKVMHGSDCDIL 427
Query: 217 WLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEM 276
WLQRDF IY N+FDTGQA R L L SL YLL H+CG++A+K+YQ ADWRVRPLP EM
Sbjct: 428 WLQRDFAIYCVNLFDTGQACRTLALPGCSLAYLLKHYCGIDADKKYQLADWRVRPLPSEM 487
Query: 277 LRYAREDTHYLLYIYDIMKIKL-SSMPKESENSDTP-LTEVYKRSYDVCRQLYEKELLSE 334
++YAREDTHYLLYIYD ++ + ++ P S S + EV RS ++C + YEKEL SE
Sbjct: 488 VKYAREDTHYLLYIYDRLRQDIFNTKPNTSTVSGFERMEEVLVRSKELCMRRYEKELFSE 547
Query: 335 NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 394
SYL + + V+ L +WRD +AR DDES YVLP+ ++ IA++ PT
Sbjct: 548 TSYLSLIKFSRGCTASISENVIRVLFKWRDTVARKDDESIRYVLPDHMILSIAQEAPTEV 607
Query: 395 AKLRRLLKSKHSYIERYMGPVLSIIKNSMQN 425
++L + R ++ +I ++Q+
Sbjct: 608 SQLLSCCNPVPKLVRRDAKIIVDLITKALQS 638
>gi|443695610|gb|ELT96477.1| hypothetical protein CAPTEDRAFT_99256, partial [Capitella teleta]
Length = 627
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 159/387 (41%), Positives = 225/387 (58%), Gaps = 33/387 (8%)
Query: 38 IVGGSAPASVKVKDRKEKSKVP-----FHVPT---ITKPQEEYKIVVNNANQPFQHVW-- 87
+V P ++ K+ +K+ FH+ + I +PQ ++K ++N N+PF +
Sbjct: 111 VVASMTPKAISGSWNKQMTKITESSRSFHLLSAKNIQRPQGKFKDKIDNTNRPFIPIIKE 170
Query: 88 ---LQKSEDSGRFI-HPLDNLSVLDF---------------VDKDIGDVEAVKPPSLEQT 128
KS ++ R++ PL NL L F + + VE P ++ T
Sbjct: 171 KPNAMKSLEASRWVLFPLSNLISLRFSYPHPYQYELDHFEPTPEQLKKVEPQTPLPIDDT 230
Query: 129 PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLR 188
P +V+ +DL++L A L V E AVD+EH+ YRSFLGLTCL+QISTRT DF+VD L LR
Sbjct: 231 PISMVDTEEDLRDLCAMLSQVKEIAVDVEHHSYRSFLGLTCLLQISTRTHDFLVDALALR 290
Query: 189 VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
+ L VF DP KV HGA++DI WLQRD G+Y+ NMFDT A++ L L R SL +
Sbjct: 291 EHLH-LLNNVFTDPGIVKVFHGAEQDIHWLQRDLGVYVVNMFDTFHAAKALGLPRLSLAH 349
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
LL +C V +K++Q ADWR+RPLP++++ YAREDTHYLLY++D++K +L E+ N
Sbjct: 350 LLTTYCSVKPDKKFQMADWRIRPLPEQLVHYAREDTHYLLYVHDLLKNQLLDAGNEAANL 409
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
L V S VC+ Y K +LS +S+L I N+QQ+ + + WRD R
Sbjct: 410 ---LCSVLDSSTGVCKARYVKPILSSDSHLVIMKKARKWFNSQQMQALKEMYAWRDGCGR 466
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAA 395
DDESTGYVLPN ++ IA+ LP A
Sbjct: 467 VDDESTGYVLPNHMMLNIAENLPKEPA 493
>gi|307107266|gb|EFN55509.1| hypothetical protein CHLNCDRAFT_133914 [Chlorella variabilis]
Length = 1092
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 166/415 (40%), Positives = 228/415 (54%), Gaps = 48/415 (11%)
Query: 67 KPQEEYKIVVNNANQPFQHVWLQKSEDSGRFI--------------------HPLDN-LS 105
+PQE + V+N+ PFQH K + + HPL L
Sbjct: 168 RPQEAFADPVDNSRGPFQH----KLDSLAGVVDVEAAAAAAAAAAAAGAPQPHPLQQRLE 223
Query: 106 VLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFL 165
L + + EA P S E TPF ++ V L+ A +L + E AVDLE + YRSF
Sbjct: 224 GLQYPAWQLARGEARPPHSHEDTPFTFIDTVPALRAAAQRLAAARELAVDLEAHSYRSFQ 283
Query: 166 GLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIY 225
G CLMQ+STR+ED V+DTL LR VGP L +F DP KV+HGAD D+ WLQRDFG++
Sbjct: 284 GFCCLMQLSTRSEDLVIDTLALRAHVGPALAPIFADPGVVKVLHGADSDVAWLQRDFGLF 343
Query: 226 LCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTH 285
L N+FDTGQA+RVL + + L +LL +CG A+K +Q ADWRVRPL EML YAR DTH
Sbjct: 344 LANLFDTGQAARVLGMRGHGLAHLLDFYCGFKADKRFQLADWRVRPLTPEMLHYARSDTH 403
Query: 286 YLLYIYDIMKIKLS----SMPKE--------------SENSDTPLTEVYKRSYDVCRQLY 327
+LLY YD +K L+ S+P+ + + L V +RS +C Y
Sbjct: 404 HLLYCYDKLKAALAEAGDSVPEHLAVELPPAASTAAAAAGAGAALATVLERSRRLCLLQY 463
Query: 328 EKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 387
+KE S ++L + A L +QL+V L EWRD +AR DESTGY+LP L+++A
Sbjct: 464 DKERYSPLAFLDLASKLNASLTDEQLSVFGALYEWRDSVARQLDESTGYLLPRAQLLKLA 523
Query: 388 KQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 442
+ +P T +L + L I R + VL+ I+ + Q EV+A + E+R +
Sbjct: 524 QAMPRTVLELHKALGRSSPVISRQVAEVLAAIQAARQP----EVVA-AVGEQRQQ 573
>gi|410899603|ref|XP_003963286.1| PREDICTED: exosome component 10-like [Takifugu rubripes]
Length = 885
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 138/267 (51%), Positives = 181/267 (67%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+T + ++DL L KL + EFAVDLEH+ YRSFLG+TCLMQISTR EDF++DT
Sbjct: 280 VEETKCSFITTLEDLVALNEKLCQLSEFAVDLEHHSYRSFLGITCLMQISTREEDFIIDT 339
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L++R ++ L E F DP KV HGAD DI WLQRDFG+Y+ +FDT QASR L L R+
Sbjct: 340 LEVRSEMY-ILNEAFTDPAIVKVFHGADSDIEWLQRDFGLYVVRLFDTHQASRALNLARH 398
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL HFC V ++K YQ ADWR+RPLP+EM++YAR DTHYLLYIYD ++ +L
Sbjct: 399 SLDHLLTHFCNVASDKRYQLADWRIRPLPEEMVQYARSDTHYLLYIYDRVRAQLLDF--- 455
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
+ L V+ RS D+ + Y K + +E SYL + Q N QQLA L WRD
Sbjct: 456 NHGQAGLLKSVWDRSRDISLKKYMKPIFTEESYLELQRKQKKSFNTQQLAAFRLLFAWRD 515
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
+AR +DESTGY LP +I+I+++LP
Sbjct: 516 KLARQEDESTGYALPTHMMIKISEELP 542
>gi|47228827|emb|CAG07559.1| unnamed protein product [Tetraodon nigroviridis]
Length = 550
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 180/421 (42%), Positives = 239/421 (56%), Gaps = 63/421 (14%)
Query: 17 EGDGNEGGFQ---LVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPFHVPTITKPQEEYK 73
+G GFQ +V +KG GG R E ++ H + +PQ ++K
Sbjct: 109 QGPVMPAGFQPPKIVVSSWNRKGSGSGG----------RSEMFRL-LHAKNVARPQLKFK 157
Query: 74 IVVNNANQPFQHVWLQK--------SEDSGRFIHP-----LDNLSVL-DFVDK-----DI 114
V+N+N PF K S + + +H LD + L DF+ + ++
Sbjct: 158 EKVDNSNTPFIPKIFIKPNAVKPLPSYFTNKQMHKEKPEDLDVPAALADFIHQQRTQENV 217
Query: 115 GDVEA----------VKPPSL----EQTPFKLVEEVK-----DLKELAA---KLKSVDEF 152
D+ A + P SL E +K V E K L+ELAA KL + EF
Sbjct: 218 VDMCAHPYQYELDHLMIPESLLSKSEPQLYKPVAETKCSFITTLEELAALNEKLCQLSEF 277
Query: 153 AVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGAD 212
AVDLEH+ YRSFLG+TCLMQISTR EDF++DTL+LR ++ L E F DP KV HGAD
Sbjct: 278 AVDLEHHSYRSFLGITCLMQISTREEDFIIDTLELRSEMY-ILNEAFTDPAIVKVFHGAD 336
Query: 213 RDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 272
DI WLQRDFG+Y+ +FDT QASR L L R+SL++LL HFC V ++K YQ ADWR+RPL
Sbjct: 337 SDIEWLQRDFGLYVVRLFDTHQASRALNLARHSLDHLLTHFCNVASDKRYQLADWRIRPL 396
Query: 273 PDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKE 330
P+EM++YAR DTHYLLYIYD ++ +L N P L V+ RS D+ + Y K
Sbjct: 397 PEEMVQYARADTHYLLYIYDCVRAQLLDF-----NHGQPGLLKSVWDRSRDISLKKYMKP 451
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+ +E SYL + Q N QQLA L WRD +AR +DESTGYVLP +I+I+++L
Sbjct: 452 IFTEESYLELQRKQKKSFNTQQLAAFRLLFAWRDKLARQEDESTGYVLPTHMMIKISEEL 511
Query: 391 P 391
P
Sbjct: 512 P 512
>gi|403344491|gb|EJY71591.1| hypothetical protein OXYTRI_07421 [Oxytricha trifallax]
Length = 967
Score = 282 bits (721), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 149/368 (40%), Positives = 228/368 (61%), Gaps = 27/368 (7%)
Query: 59 PFHVPTI-TKPQEEY-----------KIVVNNA-NQPFQHVWLQKSEDSGRFIHPLDNLS 105
PF VPT+ +KP +Y +I N N+ FQ ++ +D+ HP
Sbjct: 196 PF-VPTLASKPNSKYPLSEDIVTAQRQIAANPLLNRQFQLGDHKQQKDAVSLSHPY--YQ 252
Query: 106 VLDFVDKDIGDVEAV-------KPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEH 158
++ +++G+++ + K +LE TPF+ V++ + L E+ L E A+DLEH
Sbjct: 253 EIEEFQEEVGNMQTLQEEIVPQKYKALEDTPFEFVDDEEKLDEMVKILSGSREIAIDLEH 312
Query: 159 NQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWL 218
+ +RS+ G TCLMQIS RT D+VVDTLKLR +GP L +F DP KV+HGAD D+ WL
Sbjct: 313 HNHRSYQGFTCLMQISNRTHDYVVDTLKLRQSLGPKLLPLFTDPQITKVLHGADYDVEWL 372
Query: 219 QRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLR 278
Q+DF +Y+ NMFDTGQA+R+L+ L +LL +CGV +K+YQ ADWR RP+P+EML+
Sbjct: 373 QKDFSLYVVNMFDTGQAARILQKPGFGLAFLLQSYCGVLTDKKYQLADWRQRPIPEEMLK 432
Query: 279 YAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT---EVYKRSYDVCRQLYEKELLSEN 335
YAREDTHYLLY+YD+M+ +L + +N+ PL+ +V +S +C++ YEK ++ +
Sbjct: 433 YAREDTHYLLYVYDLMRKELIQNAVK-QNASNPLSMYRQVLIKSNQLCQKQYEKPIVKDY 491
Query: 336 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 395
+Y I G + +Q++V+ L + RD IAR +DES+ Y +PN + ++ K LPTT
Sbjct: 492 NYYMIVGRNKTIQSMKQISVLKMLVKLRDYIARLEDESSQYAIPNHIMFQMGKDLPTTRN 551
Query: 396 KLRRLLKS 403
+++ +S
Sbjct: 552 QIKDCCRS 559
>gi|390345989|ref|XP_001198503.2| PREDICTED: exosome component 10 [Strongylocentrotus purpuratus]
Length = 752
Score = 281 bits (720), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 169/390 (43%), Positives = 220/390 (56%), Gaps = 47/390 (12%)
Query: 24 GFQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPFHVPTIT-KPQEEYKIVVNNANQP 82
F+L++ +N A +K KDR + S VPF VP IT KP NA +P
Sbjct: 157 NFRLMHARN---------IARPQLKFKDRVDNSNVPF-VPVITHKP---------NALKP 197
Query: 83 FQHVW-------LQKSEDSG-----------RFIHPLDNLSVLDFVDKDIGDVEAVKPPS 124
V+ L K++ S + HP + LD ++ +E V PS
Sbjct: 198 LPEVFDTTKKSFLTKTDSSSPAKRDSETQTEAYPHPYQH--ELDHLEPLPSQLEPVDDPS 255
Query: 125 ---LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV 181
LE TPF LV+ V L+EL+ LK E AVDLEH+ YRS+LG TCLMQIST D+V
Sbjct: 256 YTPLEATPFTLVDTVSKLEELSRSLKQSKEIAVDLEHHSYRSYLGFTCLMQISTAEHDYV 315
Query: 182 VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL 241
VDTL+LR ++ L + F DP KV HGA+ DI WLQRD G+Y+ NMFDT QASR L
Sbjct: 316 VDTLELRSELQ-MLNDAFTDPKIVKVFHGANMDIDWLQRDLGLYVVNMFDTHQASRSLGF 374
Query: 242 ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
+SL LL +C V A+K+YQ ADWR+RPLP+EML YAREDTHYLLYIY MK +L
Sbjct: 375 PHHSLASLLSRYCQVEADKQYQLADWRIRPLPEEMLHYAREDTHYLLYIYHTMKNELIKR 434
Query: 302 PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCE 361
+ N L V +S +C Q Y K + + +S++ + N +Q+ L
Sbjct: 435 GNDRRNL---LRAVLDQSTRICVQRYNKPIFTNDSHVTAFQKNRKIFNKKQMHAFKKLFA 491
Query: 362 WRDVIARADDESTGYVLPNRTLIEIAKQLP 391
WRD +AR +DESTGY+LP L +IA+ LP
Sbjct: 492 WRDSLARQEDESTGYILPMHMLFQIAEILP 521
>gi|405969148|gb|EKC34144.1| Exosome component 10, partial [Crassostrea gigas]
Length = 309
Score = 281 bits (720), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 138/271 (50%), Positives = 184/271 (67%), Gaps = 4/271 (1%)
Query: 121 KPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDF 180
KP +E TP V V +L + KL+ AVDLEH+ YRSF G+TCLMQIST T+DF
Sbjct: 2 KPRLVEDTPLTFVSTVIELSSVIDKLRKEHIVAVDLEHHSYRSFQGITCLMQISTATDDF 61
Query: 181 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 240
++DTL LR + P L E+F P KV HGAD DI WLQRD G+Y+ NMFDTGQA+RVL
Sbjct: 62 LIDTLALRNDLSP-LNEIFTHPAVVKVFHGADSDIDWLQRDLGLYVVNMFDTGQAARVLN 120
Query: 241 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300
R SL +L+ H+C V +K+YQ ADWR+RPLP E+++YAREDTHYL YIY MK +L +
Sbjct: 121 HSRFSLAHLMEHYCDVITDKQYQLADWRIRPLPAELMKYAREDTHYLTYIYQRMKQELLA 180
Query: 301 MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 360
+ +N L V +RS ++C ++Y+K++ E+SYL +Y N++QL + L
Sbjct: 181 RGNDQKNL---LLSVLQRSTEICAKVYKKQVFKEDSYLELYRKSKKVFNSRQLQALQKLY 237
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+WRD +AR +DESTGYVLPN +++IA LP
Sbjct: 238 QWRDKLARQEDESTGYVLPNHMILQIADILP 268
>gi|213510932|ref|NP_001133834.1| Exosome component 10 [Salmo salar]
gi|209155512|gb|ACI33988.1| Exosome component 10 [Salmo salar]
Length = 885
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 219/373 (58%), Gaps = 55/373 (14%)
Query: 65 ITKPQEEYKIVVNNANQPF--------------------QHVWLQKSED----------- 93
+T+PQ +++ V+N+N PF +H+ ++ ED
Sbjct: 181 VTRPQLKFREKVDNSNTPFTPKIIIKPNARKPLPSYFTNKHIRKERPEDLDVPAALADFI 240
Query: 94 ---------SGRFIHP----LDNLSVL-DFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDL 139
F HP LD+L++ + + K + + KP L +T ++ ++DL
Sbjct: 241 HQQRTQEHVEDMFAHPYQYELDHLALPENLLSK--PEPQMYKP--LAETKCSFIDNLEDL 296
Query: 140 KELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVF 199
+ KL EFAVDLEH+ YRSFLG+TCLMQISTR EDF++DTL+LR ++ L E F
Sbjct: 297 VAVNEKLTKTSEFAVDLEHHSYRSFLGITCLMQISTRDEDFIIDTLELRSELY-ILNEAF 355
Query: 200 KDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNAN 259
DP KV HGAD DI WLQ+D G+Y+ NMFDT QASR L L R+SL++LL FC V+++
Sbjct: 356 TDPAIVKVFHGADSDIEWLQKDLGLYIVNMFDTHQASRTLNLGRHSLDHLLKLFCNVDSD 415
Query: 260 KEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE-VYKR 318
K YQ ADWR+RPLPDEM +YAR DTHYLLY+YD +++ L E N L + V+ +
Sbjct: 416 KRYQLADWRIRPLPDEMFQYARADTHYLLYVYDRLRVDLW----EVGNGQPALLQMVWHK 471
Query: 319 SYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVL 378
S D+ + Y K L +++SY+ + Q N QQL L WRD +AR +DESTGYVL
Sbjct: 472 SKDISLKKYMKPLFTDDSYMDLLRKQKKVFNTQQLTAFRLLYGWRDKLARQEDESTGYVL 531
Query: 379 PNRTLIEIAKQLP 391
PN +I+I+ LP
Sbjct: 532 PNHMMIKISDILP 544
>gi|390368374|ref|XP_003731440.1| PREDICTED: exosome component 10-like, partial [Strongylocentrotus
purpuratus]
Length = 776
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 168/390 (43%), Positives = 219/390 (56%), Gaps = 47/390 (12%)
Query: 24 GFQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPFHVPTIT-KPQEEYKIVVNNANQP 82
F+L++ +N A +K KDR + S VPF VP IT KP NA +P
Sbjct: 11 NFRLMHARN---------IARPQLKFKDRVDNSNVPF-VPVITHKP---------NALKP 51
Query: 83 FQHVW-------LQKSEDSG-----------RFIHPLDNLSVLDFVDKDIGDVEAVKPPS 124
V+ L K++ S + HP + LD ++ +E V PS
Sbjct: 52 LPEVFDTVKKSFLTKTDSSSPAKRDSETQTEAYPHPYQH--ELDHLEPLPSQLEPVDNPS 109
Query: 125 ---LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV 181
LE TPF LV+ V L+EL+ LK E AVDLEH+ YRS+LG TCLMQIST D+V
Sbjct: 110 YTPLEATPFTLVDTVSKLEELSRSLKQSKEIAVDLEHHSYRSYLGFTCLMQISTAEHDYV 169
Query: 182 VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL 241
VDTL+LR ++ L + F DP KV HGA+ D WLQRD G+Y+ NMFDT QASR L
Sbjct: 170 VDTLELRSELQ-MLNDAFTDPKIVKVFHGANMDFDWLQRDLGLYVVNMFDTHQASRSLGF 228
Query: 242 ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
+SL LL +C V A+K+YQ ADWR+RPLP+EML YAREDTHYLLYIY MK +L
Sbjct: 229 PHHSLASLLSRYCQVEADKQYQLADWRIRPLPEEMLHYAREDTHYLLYIYHTMKNELIKR 288
Query: 302 PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCE 361
+ N L V +S +C Q Y K + + +S++ + N +Q+ L
Sbjct: 289 GNDRRNL---LRAVLDQSTRICVQRYNKPIFTNDSHVTAFQKNRKIFNKKQMHAFKKLFA 345
Query: 362 WRDVIARADDESTGYVLPNRTLIEIAKQLP 391
WRD +AR +DESTGY+LP L +IA+ LP
Sbjct: 346 WRDSLARQEDESTGYILPMHMLFQIAEILP 375
>gi|345478840|ref|XP_001599044.2| PREDICTED: exosome component 10 [Nasonia vitripennis]
Length = 1163
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 147/342 (42%), Positives = 210/342 (61%), Gaps = 19/342 (5%)
Query: 65 ITKPQEEYKIVVNNANQPFQ-------------HVWLQKSEDSGR-FIHPLD-NLSVLDF 109
I +PQ +K ++N+ +P++ ++L+ ++ F HP + L
Sbjct: 556 IQRPQLTFKDKIDNSQKPWEPKIKYKPNSLKPLAIYLECGDEGEEIFCHPYEFELDKFQP 615
Query: 110 VDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTC 169
+K + K + TP ++E+V+DLK L L+ +E AVDLEH+ YRSF G+TC
Sbjct: 616 PEKQLVKKRPTKYKPVLDTPLIVIEKVQDLKILLEDLEKYNEIAVDLEHHSYRSFQGITC 675
Query: 170 LMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 229
LMQIST+ D+++DTL LR ++ L E+F P+ KV HGAD DI+WLQRD G+Y+ NM
Sbjct: 676 LMQISTKDTDYLIDTLTLRSELH-VLNEIFTKPSILKVFHGADSDILWLQRDLGLYIVNM 734
Query: 230 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 289
FDT QA++ L L SL YLL C ++ANK +Q ADWR+RPLP+E+++YAREDTHYLLY
Sbjct: 735 FDTYQAAKQLGLPFLSLSYLLKTHCEISANKHFQLADWRIRPLPEELMKYAREDTHYLLY 794
Query: 290 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 349
I DI+ +++ + L VY RS D+C+Q Y K + +ENSY +Y N
Sbjct: 795 IKDILS---NALIDSANGQSNILKAVYTRSTDICKQTYTKPVWTENSYKAMYRKSQKMFN 851
Query: 350 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+QL + L +WRD ARA+D+ST YVLPN L+ IA+ LP
Sbjct: 852 NRQLFALQELHKWRDETARAEDDSTNYVLPNHMLLNIAETLP 893
>gi|307177174|gb|EFN66407.1| Exosome component 10 [Camponotus floridanus]
Length = 1189
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 144/341 (42%), Positives = 211/341 (61%), Gaps = 18/341 (5%)
Query: 65 ITKPQEEYKIVVNNANQPFQ-------------HVWLQKSEDSGRFIHPLD-NLSVLDFV 110
I +PQ +K ++N+++P+ +++++ E F HP + L D
Sbjct: 154 IQRPQLMFKDKIDNSSKPWMPRIKEKPNSLKPLALYVEEGEHGEVFNHPYEFELDKFDTP 213
Query: 111 DKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCL 170
+ + V+ SLE T FKL+E+ ++K L LK+ E AVDLEH+ YR+F G+TCL
Sbjct: 214 ECQLKKSVPVQYKSLESTEFKLIEKPSEIKILLEDLKNQKEIAVDLEHHSYRTFQGITCL 273
Query: 171 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 230
MQIST D+++DTL LR ++ L E+F PT K+ HGAD DI+WLQRD +Y+ NMF
Sbjct: 274 MQISTVNTDYLIDTLALRSELHQ-LNEIFTKPTILKIFHGADMDILWLQRDLSLYVVNMF 332
Query: 231 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 290
DT QA++ L L SL YLL+ +CG+N NK +Q ADWR+RPLP+E+++YAREDTHYLL+I
Sbjct: 333 DTHQAAKQLNLPYLSLAYLLNKYCGINPNKHFQLADWRIRPLPEELMKYAREDTHYLLHI 392
Query: 291 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 350
D++K +L N L VY R D+C++ Y K + +E S +++Y N
Sbjct: 393 KDMLKNELIETANGKSNI---LKAVYDRCTDLCKRTYVKSIWTEESCMNMYRKSQKSFNN 449
Query: 351 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+Q+ + L +WRD+ AR +D+S GYVLPN L+ IA+ LP
Sbjct: 450 KQMYALLELHKWRDITAREEDDSIGYVLPNHMLLNIAETLP 490
>gi|166240642|ref|XP_645586.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
gi|165988709|gb|EAL71650.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
Length = 1195
Score = 279 bits (713), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 210/335 (62%), Gaps = 18/335 (5%)
Query: 83 FQHVWLQKSEDSGRFIHPLD-NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKE 141
F + K ++ F HP + ++ + ++ + + L++TPF VE V+ L+E
Sbjct: 198 FGKIIRSKEQEGIIFPHPYEYEINNFKYTEQQTQQCKEILARGLDETPFTWVETVRQLEE 257
Query: 142 LAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKD 201
L KL E A+DLEH+ YR++ G TCLMQISTR+EDF++DTL LR + L +VF +
Sbjct: 258 LVEKLIHCQEIAIDLEHHSYRTYQGFTCLMQISTRSEDFLIDTLLLRSHIH-MLNQVFTN 316
Query: 202 PTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKE 261
P+ KV+HG+D DI WLQRDFG+Y+ NMFDTGQASR+L+ SL +LL +C ++ANK+
Sbjct: 317 PSIVKVLHGSDSDIKWLQRDFGVYIVNMFDTGQASRILEYPSASLAFLLKFYCAIDANKK 376
Query: 262 YQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---------------- 305
YQ ADWR+R LP+EM++YAREDTHYLLYIYD ++ +L S ++
Sbjct: 377 YQLADWRIRKLPEEMIKYAREDTHYLLYIYDRLRNELISKGNKNLGSSGTSTNTSTSTTT 436
Query: 306 ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
+ ++ L EV +RS ++ YEK++L +NS+++ + QL V+ L WR+
Sbjct: 437 QLNNHLLLEVLRRSRELSLLRYEKDILDDNSHINFAKKLNLQYSPTQLNVLKVLYHWREG 496
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+AR +DES Y+LPN+ ++ I ++ PT+ +L L
Sbjct: 497 LARDEDESVRYILPNQMMLTIVERQPTSVQELLTL 531
>gi|193697404|ref|XP_001951643.1| PREDICTED: exosome component 10-like [Acyrthosiphon pisum]
Length = 739
Score = 278 bits (712), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 158/401 (39%), Positives = 231/401 (57%), Gaps = 22/401 (5%)
Query: 55 KSKVPFHVPTITKPQEEYKIVVNNANQPFQ-------------HVWLQKSEDSGRFI-HP 100
K ++ H I +PQ ++KI V+N PF+ + L+ +ED F HP
Sbjct: 119 KKRILVHGRNIERPQIKFKIKVDNRPVPFKPLLTSKPNSKIPLDLCLETNEDGIMFYKHP 178
Query: 101 LD-NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHN 159
L + + AVKP SLE TPF V + L + + L +V+E A+DLE +
Sbjct: 179 YQLELEEFKVPVEHLKVSTAVKPASLEDTPFVEVYTEEQLNLMVSHLITVNELAIDLEAH 238
Query: 160 QYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQ 219
YR++ G TCLMQISTR D+++DTL LR ++ L E+F +P KV HGAD DI WLQ
Sbjct: 239 SYRTYQGFTCLMQISTRNADYIIDTLYLRDKLH-VLNEIFTNPAVVKVFHGADSDIPWLQ 297
Query: 220 RDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRY 279
RD G+Y+ NMFDT QA+++L R LE+LL H+C V+A+K +Q DWR RPL E + Y
Sbjct: 298 RDLGLYVVNMFDTYQAAKILNFSRKGLEFLLKHYCNVDADKTFQLYDWRTRPLSTEAIFY 357
Query: 280 AREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLH 339
AR DTHYLLY+YD++K L +M S N + V++RS DVC+ YE +L ++S+L
Sbjct: 358 ARCDTHYLLYVYDMIKKDLMAM---STNQCNYIELVFQRSADVCKSRYEVNILRDDSHLS 414
Query: 340 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 399
+Y + QQ+ + L WRD +AR DES GY+LPN L++I++ LP + +
Sbjct: 415 MYKRSKKMFDIQQMYALKHLYAWRDKLARELDESPGYILPNHMLLKISEMLPKESFGILA 474
Query: 400 LLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEER 440
+ + + + I+KN+ + FE A+KL E++
Sbjct: 475 CCSPVPPLVRQCLHEIHYIVKNAKEQT--FEN-AEKLNEDK 512
>gi|383849711|ref|XP_003700481.1| PREDICTED: exosome component 10-like [Megachile rotundata]
Length = 1271
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 146/343 (42%), Positives = 208/343 (60%), Gaps = 22/343 (6%)
Query: 65 ITKPQEEYKIVVNNANQPFQ-------------HVWLQKSEDSGRFIHPLDNLSVLDFVD 111
+ +PQ +K ++N+++P+ ++ ++SE+ + HP + LD
Sbjct: 183 VQRPQLMFKDKIDNSSKPWSPKIKDKPNSLKPLAIYTEESENGEVYSHPYE--FELDMFS 240
Query: 112 KDIGDVEAVKPP---SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLT 168
+ ++ +P SLE TP ++E D+K L LK E AVDLEH+ YRSF G+T
Sbjct: 241 PRMDQLKKCEPKKYKSLEDTPLIIIENPVDIKLLLEDLKRYKEIAVDLEHHSYRSFQGIT 300
Query: 169 CLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 228
CLMQIST D+++DTL LR ++ L E+F PT KV HGAD DI WLQRD +Y+ N
Sbjct: 301 CLMQISTGDADYLIDTLSLRSELHE-LNEIFTKPTILKVFHGADLDIQWLQRDLSLYIVN 359
Query: 229 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 288
MFDT QA++ L L SL YLL H+C ++ NK +Q ADWR+RPLP+E+ +YAREDTHYLL
Sbjct: 360 MFDTHQAAKQLNLPYLSLAYLLKHYCNIDPNKHFQLADWRIRPLPEELQKYAREDTHYLL 419
Query: 289 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 348
YI DI++ +++ + L VY RS D+C++ Y K + +E S + IY
Sbjct: 420 YIKDILR---NALIDAANGQINILKSVYDRSTDICKKTYVKPIWTEESCMSIYRKSQKMF 476
Query: 349 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
N +QL + L +WRDV AR +D+ST YVLPN L+ IA+ LP
Sbjct: 477 NNKQLYALIELHKWRDVTAREEDDSTAYVLPNHMLLNIAETLP 519
>gi|194376518|dbj|BAG57405.1| unnamed protein product [Homo sapiens]
Length = 529
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 134/251 (53%), Positives = 174/251 (69%), Gaps = 4/251 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 283 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++ M +
Sbjct: 402 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE---MWER 458
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 459 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTG 375
AR +DES G
Sbjct: 519 KTARREDESYG 529
>gi|347967581|ref|XP_003436085.1| AGAP002300-PB [Anopheles gambiae str. PEST]
gi|333468394|gb|EGK96928.1| AGAP002300-PB [Anopheles gambiae str. PEST]
Length = 988
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 127/271 (46%), Positives = 183/271 (67%), Gaps = 7/271 (2%)
Query: 121 KPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDF 180
+P LE+TP V++ L EL +L++ E A+DLEH+ YRS+ G TCLMQ+STRT+D+
Sbjct: 257 EPVPLERTPLMYVDQESQLAELVRELQAAKEIAIDLEHHSYRSYQGFTCLMQLSTRTKDY 316
Query: 181 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 240
+VD L LR ++ L EVF DP K KV+HG+ DI WLQRD G+YL NMFDTG+A+RVL+
Sbjct: 317 IVDALALRDELH-VLNEVFTDPKKLKVLHGSVSDIEWLQRDLGLYLVNMFDTGEAARVLQ 375
Query: 241 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300
R L++LL H+C ++ +K +Q ADWR+RP+P+ + YAR+DTHYLLYIYD M+ +L
Sbjct: 376 FSRIGLQFLLKHYCNIDTDKAFQLADWRIRPIPENFIEYARKDTHYLLYIYDRMRNEL-- 433
Query: 301 MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 360
E ++ L VY +S +C+Q Y+K ++E++ ++IY + +Q+ +
Sbjct: 434 ----LEKGESLLQTVYDKSTFMCKQRYQKPTMNEDTVMNIYRRSRYVFDHRQMYAFREVL 489
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
WRD IAR +DES GYVLP ++IA +LP
Sbjct: 490 YWRDQIARLEDESPGYVLPQHMALDIASKLP 520
>gi|357607504|gb|EHJ65543.1| PM-Scl autoantigen-like protein [Danaus plexippus]
Length = 787
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 154/376 (40%), Positives = 217/376 (57%), Gaps = 42/376 (11%)
Query: 42 SAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPL 101
S+P K++ S + F I +PQ +K V+N++ ++W+ K D I PL
Sbjct: 121 SSPVITKIQ---VGSTMFFGAKNIARPQLSFKEPVDNSD----NLWVPKISDKPNNIKPL 173
Query: 102 DNLSVLDFVDKDIGD-----------VEAVKPP---------------SLEQTPFKLVEE 135
L+ + D G+ +E +PP SLE TP +E
Sbjct: 174 ----ALNILYNDEGEAVGYEHPYKIELELYQPPTKVLEPDTEPPTFPKSLEDTPLSFIET 229
Query: 136 VKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYL 195
V DL++L L +VDE AVD+EH+ YR++ G+TCL+QIST DF++DTL +R V L
Sbjct: 230 VADLEKLVEHLNTVDEIAVDVEHHSYRTYQGITCLIQISTYEGDFIIDTLAVREHVHK-L 288
Query: 196 REVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCG 255
F DP K KV HGA+RDIVWLQRDFG+Y+ M DT QA+R L L SL+ LL +C
Sbjct: 289 NLAFTDPKKLKVFHGAERDIVWLQRDFGVYVVGMIDTHQAARALALPGLSLKSLLMRYCR 348
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 315
V+A+K YQ ADWR+RPLPDE+ +YAR DTHYLLY++ MK L ++ + + L V
Sbjct: 349 VDADKRYQLADWRIRPLPDELRQYARVDTHYLLYMWRRMKADLLAISSDG----SLLRSV 404
Query: 316 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 375
++ S +C Y KE+++E+S+L +Y N +Q+A + L WRD AR DEST
Sbjct: 405 FENSRHICSLTYNKEVINESSHLKLYVRSKKSFNTRQMAALRLLYRWRDANARELDESTT 464
Query: 376 YVLPNRTLIEIAKQLP 391
Y+LPN L+ +A+ LP
Sbjct: 465 YLLPNHMLLALAETLP 480
>gi|325183710|emb|CCA18169.1| exosome complex exonuclease RRP6like protein putativ [Albugo
laibachii Nc14]
Length = 770
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 178/451 (39%), Positives = 252/451 (55%), Gaps = 46/451 (10%)
Query: 25 FQLVYG----KNKKKGDIVGGSAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNNAN 80
F+L+ G K KK ++ + A KS+ F + KPQ+ ++ ++N+
Sbjct: 100 FRLLQGEAPRKEKKTANLQMENCSAEFAKSSTNSKSQKKFQKMEMPKPQQSFQESIDNST 159
Query: 81 QPFQHVWLQK----------SEDSGRFIHPLDN----LSVLDFVDKDIGDVEAV-KPPSL 125
PF K E+ F HP N L + D+ ++ +++ + SL
Sbjct: 160 APFVSKLSSKPHAIATSFPIHEEDASF-HPYYNELVGLKIPDW-QLEMSEMDHLFDKISL 217
Query: 126 EQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTL 185
++ F V+ +++ L+ A+DLEH+ YRS+LGLTCLMQIST DF+VDTL
Sbjct: 218 QKASFLWVDSADSFQQMLLILQEAHALAIDLEHHNYRSYLGLTCLMQISTHNHDFLVDTL 277
Query: 186 KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS 245
LR + L +VF DP K KV+HGAD DI+WLQRD G+Y+ NMFDTG+A+RVL+L R S
Sbjct: 278 ALRSSLQ-LLNQVFCDPQKLKVLHGADMDILWLQRDLGLYVVNMFDTGRAARVLQLPRFS 336
Query: 246 LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES 305
L YLL C + A+K+YQ ADWR RPL +EM RYAREDT YLL+IY MK +L + K
Sbjct: 337 LAYLLKKCCDIEADKQYQLADWRQRPLTEEMTRYAREDTRYLLFIYRKMKEEL--LLKSD 394
Query: 306 ENSDTPLTEVYKRSYDVCRQLYEKELLSEN--SYLHIYGLQGAGLNA---QQLAVVAGLC 360
N+ + EV+K S +C Q+Y K +SE+ + L AG+ A Q V L
Sbjct: 395 SNAANLVREVHKHSNQLCLQVYSKPQVSEDDCTALVTKLTASAGVTAFSELQQRVFRRLY 454
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK 420
WRD +AR DES+ YVLPN+ L++IA+ LP+ + +L RL R + P L
Sbjct: 455 FWRDAVARETDESSMYVLPNQLLLQIARHLPSKSEQLLRL---------RNVIPPL---- 501
Query: 421 NSMQNAANFEVIAQKLKEERMEVASEETEVL 451
+Q A FE++ L E+ ME SEET+ +
Sbjct: 502 --VQKHA-FEIVQLILTEKEME-QSEETKAV 528
>gi|21397264|gb|AAM51828.1|AC105730_2 Putative nucleolar protein [Oryza sativa Japonica Group]
gi|22773226|gb|AAN06832.1| Putative nucleolar protein [Oryza sativa Japonica Group]
Length = 523
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 134/225 (59%), Positives = 164/225 (72%), Gaps = 11/225 (4%)
Query: 24 GFQLVYGKNKKKGDIVGGSAPA--SVKVKDRKE---------KSKVPFHVPTITKPQEEY 72
GFQ+V GK KK+ + S ++ KD+ K+KV FH P I +PQ+ Y
Sbjct: 28 GFQVVRGKKKKRPNGGSASGAGSGTMMAKDKAAAAAAAEPWTKAKVSFHDPNIPRPQDVY 87
Query: 73 KIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKL 132
I VNN N PF HVWL+++ED R IHPL+ L + F+D+++ + E VKP LE TPF L
Sbjct: 88 AIRVNNYNVPFDHVWLERTEDGSRPIHPLEKLPMEQFIDRNVPESEPVKPADLEDTPFTL 147
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
VE+ L +LA KLKSV+EFAVDLEHNQYRSF GLTCLMQISTRTEDFVVDTLKLR+ +G
Sbjct: 148 VEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIYIG 207
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 237
YL+E FKDPTK+KVMHGADRDI+WLQRDF IY+CN+FDTGQ +
Sbjct: 208 LYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQVQK 252
Score = 156 bits (394), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 138/213 (64%), Gaps = 13/213 (6%)
Query: 314 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 373
+V KRS ++C QLYEKELL++ SYLHIYGLQ L+A+QLAVV L +WRD IAR DES
Sbjct: 249 QVQKRSNEICLQLYEKELLTDTSYLHIYGLQEHDLDAKQLAVVYALHQWRDYIAREVDES 308
Query: 374 TGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIA 433
TGYVLPN+ LIEIAK++PT A+L+R++KSK+ +++ + V+ II N+ +++ FE A
Sbjct: 309 TGYVLPNKALIEIAKKMPTDTAELKRMVKSKYPFVDENLDQVVGIIWNATESSYAFESRA 368
Query: 434 QKLKEERMEVASEETEVLV---LDTSSNL--KIPNVGRESV-DGVDALVGTTMPHPPAYT 487
++LK+ER+E ++ + + + TS NL +I ++ +E + D + V +
Sbjct: 369 EQLKKERLEQLTDRVQTISSPEMKTSMNLSGQIRSMDKEILSDNIHQQVAQA-----TFQ 423
Query: 488 QLKQEPP--KVGSSVAELDRNGLGSFAHPGEAI 518
+LK+ VG+S + R+ G F++ E +
Sbjct: 424 ELKRPMALGAVGNSTSGGQRDFFGGFSNKSEKM 456
>gi|347967577|ref|XP_312669.5| AGAP002300-PA [Anopheles gambiae str. PEST]
gi|333468393|gb|EAA07463.5| AGAP002300-PA [Anopheles gambiae str. PEST]
Length = 992
Score = 273 bits (698), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 127/271 (46%), Positives = 183/271 (67%), Gaps = 7/271 (2%)
Query: 121 KPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDF 180
+P LE+TP V++ L EL +L++ E A+DLEH+ YRS+ G TCLMQ+STRT+D+
Sbjct: 261 EPVPLERTPLMYVDQESQLAELVRELQAAKEIAIDLEHHSYRSYQGFTCLMQLSTRTKDY 320
Query: 181 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 240
+VD L LR ++ L EVF DP K KV+HG+ DI WLQRD G+YL NMFDTG+A+RVL+
Sbjct: 321 IVDALALRDELH-VLNEVFTDPKKLKVLHGSVSDIEWLQRDLGLYLVNMFDTGEAARVLQ 379
Query: 241 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300
R L++LL H+C ++ +K +Q ADWR+RP+P+ + YAR+DTHYLLYIYD M+ +L
Sbjct: 380 FSRIGLQFLLKHYCNIDTDKAFQLADWRIRPIPENFIEYARKDTHYLLYIYDRMRNEL-- 437
Query: 301 MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 360
E ++ L VY +S +C+Q Y+K ++E++ ++IY + +Q+ +
Sbjct: 438 ----LEKGESLLQTVYDKSTFMCKQRYQKPTMNEDTVMNIYRRSRYVFDHRQMYAFREVL 493
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
WRD IAR +DES GYVLP ++IA +LP
Sbjct: 494 YWRDQIARLEDESPGYVLPQHMALDIASKLP 524
>gi|308810304|ref|XP_003082461.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
(ISS) [Ostreococcus tauri]
gi|116060929|emb|CAL57407.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
(ISS) [Ostreococcus tauri]
Length = 701
Score = 272 bits (695), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 155/371 (41%), Positives = 206/371 (55%), Gaps = 27/371 (7%)
Query: 64 TITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDIGDV------ 117
T T+PQ+ ++ V+N + H L + P+ S DF K D
Sbjct: 52 TSTRPQDAFEDAVDNRLENHSHKGLMR---------PIGFDSYEDFERKAREDAYPAFAR 102
Query: 118 ----EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQI 173
+ P ++ P +V+ L+ELA L+ EFAVDLEH+ YRSF G TCLMQ+
Sbjct: 103 ESGGTTLPTPMDDEHPLVVVDTEDALEELATHLEQCKEFAVDLEHHSYRSFKGFTCLMQV 162
Query: 174 STRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG 233
STR +DFVVD L LR V L + F DP KVMHGAD D+ WLQ+DFGI++ +FDTG
Sbjct: 163 STREKDFVVDVLALRSLVRDALGKAFADPNTLKVMHGADNDVQWLQKDFGIFVSCLFDTG 222
Query: 234 QASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDI 293
QA+RVL+L +L YLL H+CG+ ANK++Q ADWRVRPL EML YAR DTHYLLY+YD
Sbjct: 223 QAARVLELPSKALAYLLQHYCGIKANKKFQLADWRVRPLTREMLDYARGDTHYLLYVYDE 282
Query: 294 MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLH--IYGLQGAGLNAQ 351
+K L++ ENS + +S DVC + Y E SY + LN
Sbjct: 283 LKKALAA---RGENS---IAATLTQSRDVCLKKYLPPTFDEGSYYEDLLKTNNLTNLNDP 336
Query: 352 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 411
QLAV A L +WRD AR DES GYV+P ++ +A P+T L + + I ++
Sbjct: 337 QLAVYAALFKWRDAAAREADESLGYVMPRELMLRLAIAAPSTKRALMEECRGQVPLIAKH 396
Query: 412 MGPVLSIIKNS 422
V +I +
Sbjct: 397 AETVADLISRA 407
>gi|340380967|ref|XP_003388993.1| PREDICTED: exosome component 10-like [Amphimedon queenslandica]
Length = 724
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 138/301 (45%), Positives = 190/301 (63%), Gaps = 12/301 (3%)
Query: 96 RFIHP----LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDE 151
R HP ++N VL+ I + + K SLE TP V + L +LK V E
Sbjct: 196 RLTHPYEYEINNFEVLE-SQTQIKEPQVYK--SLEDTPLIFVNDEGQLLSFINELKGVTE 252
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
A+DLE + YRSF G CLMQ+STRT D+++DTL LR + L EVF +P KVMHGA
Sbjct: 253 IAIDLEAHSYRSFQGFVCLMQVSTRTTDYIIDTLSLRPHLH-LLNEVFTNPNIIKVMHGA 311
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRP 271
D DI WLQRDFG+Y+ N+FDTGQA R L L R SL +LL + CGV ANK+YQ ADWR+RP
Sbjct: 312 DWDIPWLQRDFGVYIVNLFDTGQACRTLGLPRYSLAFLLSYCCGVTANKQYQLADWRIRP 371
Query: 272 LPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL 331
LP++M++YAREDTHYLLY+YD ++ + + + S + + V K S ++ ++Y+K
Sbjct: 372 LPEDMIKYAREDTHYLLYVYDRLR---NELIRRSNSQSNLINAVLKNSKEISLKVYKKPA 428
Query: 332 LSENSYLHIY-GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+++ SYL + L+ +QL + L +WR +AR +DES GYVLPN L ++ + L
Sbjct: 429 INDESYLKLCKKFNKRNLSHKQLYALKCLYQWRFNVARREDESPGYVLPNHMLFQLCEIL 488
Query: 391 P 391
P
Sbjct: 489 P 489
>gi|157124837|ref|XP_001660547.1| hypothetical protein AaeL_AAEL010007 [Aedes aegypti]
gi|108873835|gb|EAT38060.1| AAEL010007-PA [Aedes aegypti]
Length = 949
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 131/338 (38%), Positives = 207/338 (61%), Gaps = 8/338 (2%)
Query: 97 FIHPLD-NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVD 155
++HP + L + + + + +VE +P LE TP ++++ L L +LK+ E A+D
Sbjct: 237 YLHPYEFELDRFEPLKEALKEVEPEEPLKLESTPLDIIDKESQLPGLLKELKAAKELAID 296
Query: 156 LEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDI 215
LEH+ YR++ G TCLMQISTR++D+++DTL LR ++ L EVF +P KV+HGA DI
Sbjct: 297 LEHHSYRTYQGFTCLMQISTRSKDYIIDTLALREELH-ILNEVFTNPKVVKVLHGAISDI 355
Query: 216 VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDE 275
WLQRD +Y+ NMFDTG+A++VL+ R L++LL H+C ++ +K YQ ADWR+RP+P
Sbjct: 356 EWLQRDLSLYIVNMFDTGEAAKVLEFSRIGLQFLLKHYCNIDTDKAYQLADWRIRPIPHN 415
Query: 276 MLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN 335
+ YAR+DTHYLLYIYD M+ +L + + L VY +S +C+Q Y K +++E+
Sbjct: 416 FIEYARKDTHYLLYIYDRMRNELIA------KGASFLPTVYNKSTYMCKQRYVKPVINED 469
Query: 336 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 395
+ ++IY + +Q+ + WRD +AR +DES GYVLP ++IA +LP
Sbjct: 470 AVMNIYRRSKHVFDQRQMYAFREILYWRDKLARQEDESPGYVLPQHMALDIASKLPREMQ 529
Query: 396 KLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIA 433
+ S + +++ + II + + + N V A
Sbjct: 530 GIIACCTPVPSLVRQHLHTIHQIILKAREISLNKSVAA 567
>gi|198421501|ref|XP_002119853.1| PREDICTED: similar to exosome component 10, partial [Ciona
intestinalis]
Length = 647
Score = 266 bits (680), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 132/268 (49%), Positives = 182/268 (67%), Gaps = 11/268 (4%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
V++V L +L +LK E AVDLE + YRS+ G+TCLMQ+STRT+D++VDT+ LR ++
Sbjct: 66 FVDQVNALHKLMDELKEASEIAVDLEAHSYRSYQGITCLMQLSTRTKDYIVDTIALRAEL 125
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLH 251
L +VF +P KV HGAD DI+WLQRDFGIY+ N+FDTGQA+R L L+R+SL+YLL
Sbjct: 126 N-ILNQVFANPNIIKVFHGADSDIIWLQRDFGIYVVNLFDTGQAARALGLQRHSLDYLLT 184
Query: 252 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP 311
H+C V A+K+YQ ADWR+RPLP EML YA+ DTHYLLY+YD+M++ L
Sbjct: 185 HYCNVQADKKYQLADWRIRPLPKEMLLYAQGDTHYLLYVYDMMRLDLVKT-----GDPGL 239
Query: 312 LTEVYKRSYDVCRQLYEKELLSENSYLHI---YGLQGA--GLNAQQLAVVAGLCEWRDVI 366
L +V +S D+C YEK + ++ S+L + + +G QQ+ + + WRD +
Sbjct: 240 LHKVIDKSRDICCLKYEKPITNDTSHLVLLEKHKRRGGKKDFRPQQIEALRLIFAWRDGL 299
Query: 367 ARADDESTGYVLPNRTLIEIAKQLPTTA 394
AR +DES GYVLPN L++IA+ LP A
Sbjct: 300 ARQEDESCGYVLPNHMLLQIAEILPREA 327
>gi|328776419|ref|XP_003249163.1| PREDICTED: exosome component 10-like [Apis mellifera]
Length = 1271
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 142/341 (41%), Positives = 208/341 (60%), Gaps = 18/341 (5%)
Query: 65 ITKPQEEYKIVVNNANQPF-------------QHVWLQKSEDSGRFIHPLD-NLSVLDFV 110
I +PQ +K ++N+++P+ ++L++SE+ F HP + L++
Sbjct: 180 IQRPQLMFKDKIDNSSKPWCPRIKDKPNSLKPLAIYLEESENGEVFNHPYEYELNMFVPP 239
Query: 111 DKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCL 170
+ + E K +LE T ++++ D+K L LK E AVDLEH+ YRSF G+TCL
Sbjct: 240 NDQLKKSEPTKYKNLEDTLLVMIKDPSDIKLLINDLKQYKEIAVDLEHHSYRSFQGITCL 299
Query: 171 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 230
MQIST +D+++DTL LR ++ L E+F PT KV HGAD DI WLQRD +Y+ NMF
Sbjct: 300 MQISTEDKDYLIDTLSLRSELHE-LNEIFTKPTILKVFHGADLDIQWLQRDLSLYVVNMF 358
Query: 231 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 290
DT QA++ L L SL YLL H+C V+ +K +Q ADWR+RPLP+++++YAREDTHYLLYI
Sbjct: 359 DTHQAAKQLNLPYLSLAYLLKHYCNVDPDKHFQMADWRIRPLPEKLIKYAREDTHYLLYI 418
Query: 291 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 350
D++K L + N L VY RS ++C++ Y K + +E + + +Y N
Sbjct: 419 KDMLKNALIDVANGQINI---LKVVYDRSTEICKKTYVKPIWTEENCMTMYRKSQKMFNN 475
Query: 351 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+QL + L +WRD AR +D+S YVLPN L+ IA+ LP
Sbjct: 476 KQLYALRELHKWRDDTARIEDDSIAYVLPNHMLLNIAETLP 516
>gi|170035413|ref|XP_001845564.1| exosome component 10 [Culex quinquefasciatus]
gi|167877380|gb|EDS40763.1| exosome component 10 [Culex quinquefasciatus]
Length = 796
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 214/372 (57%), Gaps = 24/372 (6%)
Query: 65 ITKPQEEYKIVVNN-ANQPF------------QHVWLQKSEDSGR---FIHPLD-NLSVL 107
I +PQ +K+ V+N A PF L + +++G ++HP + L
Sbjct: 179 IVRPQINFKVPVDNSALNPFVPKIKDKPNSLKPLAVLPEYDEAGNIVSYLHPYEFELDRF 238
Query: 108 DFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGL 167
+ K + VE +P LE TP +++ + L +L+ E A+DLEH+ YR+F G
Sbjct: 239 EPSKKALKSVEPQEPLDLESTPLDFIDKEDQVAPLLEELRQAKELAIDLEHHSYRTFQGF 298
Query: 168 TCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLC 227
TCLMQISTRT+D+++DTL LR ++ L EVF D KV+HG+ DI WLQRD +Y+
Sbjct: 299 TCLMQISTRTKDYIIDTLALREELH-VLNEVFTDTKVVKVLHGSISDIEWLQRDLALYVV 357
Query: 228 NMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL 287
NMFDTG+A++VL+ R L++LL H+C + +K YQ ADWR+RP+P + YAR+DTHYL
Sbjct: 358 NMFDTGEAAKVLEFSRIGLQFLLKHYCNIETDKAYQLADWRIRPIPKNFIEYARKDTHYL 417
Query: 288 LYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG 347
LYIYD M+ +L E + L VY +S +C+ YEK +++E+S ++IY
Sbjct: 418 LYIYDRMRNEL------IEKGASFLQTVYNKSTFLCKHRYEKPVINEDSIMNIYHRSKHV 471
Query: 348 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 407
+ +Q+ + WRD AR +DES GYVLP ++IA +LP + S
Sbjct: 472 FDQRQMYAFREILYWRDKTARLEDESAGYVLPQHMALDIASKLPREMQGIIACCTPVPSL 531
Query: 408 IERYMGPVLSII 419
+ +++ + +II
Sbjct: 532 VRQHLHTLHAII 543
>gi|307212494|gb|EFN88225.1| Exosome component 10 [Harpegnathos saltator]
Length = 804
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 141/341 (41%), Positives = 201/341 (58%), Gaps = 18/341 (5%)
Query: 65 ITKPQEEYKIVVNNANQPFQ-------------HVWLQKSEDSGRFIHPLD-NLSVLDFV 110
+ KPQ +K +NN+ +P+ ++L++ E+ F HP L+ +
Sbjct: 95 VRKPQLMFKDKINNSFKPWMPRIKEKPNSLKPLALYLEEGENGEIFSHPYGFELNKFEMP 154
Query: 111 DKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCL 170
+ + VK SL+ T F + D+K + LK +E AVDLEH+ YRSF G+TCL
Sbjct: 155 ECQLKKSIPVKYKSLDNTQFIYISTPSDIKIILDDLKRYNEIAVDLEHHSYRSFQGVTCL 214
Query: 171 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 230
MQIST D+++DTL LR ++ L E+F PT KV HGAD DI WLQRD +Y+ NMF
Sbjct: 215 MQISTVDTDYLIDTLILRSELHQ-LNEIFTKPTILKVFHGADFDIQWLQRDLSLYVVNMF 273
Query: 231 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 290
DT QA++ L SL +LL +C +N NK +Q ADWR+RPLP+E+++YAREDTHYLL+I
Sbjct: 274 DTHQAAKQLNFPYLSLAFLLKKYCNINPNKHFQLADWRIRPLPEELMKYAREDTHYLLHI 333
Query: 291 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 350
D++K +L + N L VY S D+C++ Y K + +E S ++ Y N
Sbjct: 334 KDMLKNELIELANGQSNI---LKAVYDMSTDICKRTYVKPIWTEESCMNTYRKSQKMFNN 390
Query: 351 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+QL L +WRD+ AR +D+S YVLPN L+ IA+ LP
Sbjct: 391 KQLYAFKELHKWRDLTAREEDDSINYVLPNHMLLNIAETLP 431
>gi|321468927|gb|EFX79910.1| hypothetical protein DAPPUDRAFT_304334 [Daphnia pulex]
Length = 834
Score = 262 bits (670), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 149/351 (42%), Positives = 202/351 (57%), Gaps = 37/351 (10%)
Query: 65 ITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDIGDVEAVKP-- 122
I +PQ ++K + N+ PF + K +D PL L L+ D+GD E P
Sbjct: 152 ILRPQLKFKEKIKNSPGPF----IPKIKDKPHSSKPLAILLELN----DLGDEEFSHPYE 203
Query: 123 ----------------------PSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQ 160
PS+++ P +++ + LK L L AVDLE +
Sbjct: 204 FELERFTPDPKFFTVLDEVPPFPSVQEIPLVMIDTEQGLKSLLKDLLEETVIAVDLEAHS 263
Query: 161 YRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQR 220
YRSF GLTCLMQIST + D+++DTL+L Q+ P L EVF +P K+ HGAD DI WLQR
Sbjct: 264 YRSFQGLTCLMQISTSSSDYIIDTLELWDQLQP-LNEVFCNPKIVKIFHGADMDIQWLQR 322
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
DFGIY+ N+FDT A+++L + SL +LL H+C V A+K+YQ ADWR+RPLP++M+ YA
Sbjct: 323 DFGIYVVNLFDTYHAAKLLGFAQLSLSFLLRHYCQVIADKQYQLADWRIRPLPEQMVNYA 382
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 340
REDTHYL YIY+ MK L K D LT V++ S VC + Y ++ S+L +
Sbjct: 383 REDTHYLGYIYEKMKKDL----KMKGTGDNLLTAVWQNSRLVCLKRYRIPPITAESHLEL 438
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
Y L N +QL + L WRD IAR +DESTG+VLP L++IA LP
Sbjct: 439 YRLSKKIFNERQLFALKELFAWRDRIAREEDESTGFVLPKHMLLQIADVLP 489
>gi|241600516|ref|XP_002405158.1| exosome component, putative [Ixodes scapularis]
gi|215502468|gb|EEC11962.1| exosome component, putative [Ixodes scapularis]
Length = 518
Score = 262 bits (669), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 122/234 (52%), Positives = 168/234 (71%), Gaps = 4/234 (1%)
Query: 158 HNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVW 217
H+ YR+F G TCLMQISTR+ D+VVDTL LR ++ L EVF +P KV+HGAD D++W
Sbjct: 40 HHSYRTFQGFTCLMQISTRSSDYVVDTLALRHELH-LLNEVFANPKIIKVLHGADMDVLW 98
Query: 218 LQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEML 277
LQRDFG+YL +FDTGQA+RVL + SL +LL H+C ++ +K++Q ADWR+RPLP EM+
Sbjct: 99 LQRDFGLYLVGLFDTGQAARVLGMAHLSLAFLLRHYCHLDTDKKFQLADWRIRPLPLEMI 158
Query: 278 RYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSY 337
+YAREDTHYLL++YD+M+ L + + N L V++RS VC + YEK L +E+SY
Sbjct: 159 KYAREDTHYLLHVYDLMRRDLLAKGNQLNNL---LHSVFQRSKQVCLKRYEKPLYTEDSY 215
Query: 338 LHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
L +Y N++QL + L WRD I+R +DESTGYVLPN +++I++ LP
Sbjct: 216 LELYRKSKKAFNSKQLYALRHLYSWRDRISRLEDESTGYVLPNHMILQISEILP 269
>gi|312385767|gb|EFR30186.1| hypothetical protein AND_00361 [Anopheles darlingi]
Length = 526
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 126/271 (46%), Positives = 178/271 (65%), Gaps = 6/271 (2%)
Query: 121 KPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDF 180
+P L+ T ++ L L + LK+ + A+DLEH+ YR+F G TCLMQ+STR +D+
Sbjct: 200 EPLPLDTTELLFIDHESQLSALLSDLKAAPQIAIDLEHHSYRTFQGFTCLMQLSTRKKDY 259
Query: 181 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 240
+VDTL LR ++ L EVF DP K KV+HGA DI WLQRD G+YL NMFDTG+A+RVL+
Sbjct: 260 IVDTLALRDELH-VLNEVFTDPRKLKVLHGAISDIEWLQRDLGLYLVNMFDTGEAARVLQ 318
Query: 241 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300
R L++LL H+C + +K YQ ADWR+RPLP + YAR+DTHYLLYIYD ++ L
Sbjct: 319 FSRIGLQFLLKHYCNIETDKAYQLADWRMRPLPPAFIEYARKDTHYLLYIYDRIRNDLL- 377
Query: 301 MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 360
+ D+ L VY +S +C+Q Y+K +++E+S ++IY + +Q+ + +
Sbjct: 378 ----EKGGDSLLQTVYDKSTFLCKQRYQKPIVNEDSIMNIYRRSRYVFDHRQMYALREIL 433
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
WRD IAR +DES GYVLP ++IA +LP
Sbjct: 434 YWRDKIARQEDESPGYVLPQHMALDIASKLP 464
>gi|424513045|emb|CCO66629.1| exosome component 10 [Bathycoccus prasinos]
Length = 911
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 154/435 (35%), Positives = 231/435 (53%), Gaps = 64/435 (14%)
Query: 52 RKEKSKVPFHV--PTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFI--------HPL 101
+K S FH +I++PQE +K VV+N + + L G+ HPL
Sbjct: 124 KKNISNAAFHGGGSSISRPQEAFKDVVDNRTETDMNFVLPPPRGKGKASTSALKESKHPL 183
Query: 102 DNL--------SVLDFVDKD---IGDVEAVK------------PPSLEQTPFKLVEEVKD 138
++ S+ D+VDK+ GD + P+ E+ P V+
Sbjct: 184 ASVLLDSFKYNSIEDYVDKNHNSAGDRTTAQLWELRCSDPILPTPTNEENPATFVDNENG 243
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L+EL L FAVDLEH+ YR++ G TCL+QISTR +DFVVD L+LR +GP L
Sbjct: 244 LEELEGVLSKAPIFAVDLEHHSYRTYRGFTCLIQISTREQDFVVDALRLRHLIGPALGRH 303
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNA 258
F++ K KV HGA+ D++WLQRDFGIY+ NMFDTGQA+R+L+L L YLL +CG+ A
Sbjct: 304 FENEEKLKVFHGANSDMIWLQRDFGIYVVNMFDTGQAARILELPSFGLAYLLKQYCGIKA 363
Query: 259 NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKR 318
K+YQ ADWR+RPL EM+ YAR DTH LLY++D +K +L + + + V+ +
Sbjct: 364 EKKYQLADWRLRPLSREMINYARSDTHSLLYVHDRLKQELYA-----KGGVECIQSVFLK 418
Query: 319 SYDVCRQLYEKELLSENSYLHIY--------------------GLQGAGLNAQQL----- 353
S DVC YE +++++ SY Q A L+ + L
Sbjct: 419 SRDVCLLTYEPQVITDLSYHEDLMKSANASSGGGSGHGNTLSRSAQQAQLSQEILKSPVA 478
Query: 354 -AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 412
A + L +WRD ARA+DES G+V+P ++ +A + P A + + + S + ++
Sbjct: 479 QAAMEALFKWRDDCARANDESLGFVMPRHLMLRLASEQPKVARDVVSTARGESSLVAKFS 538
Query: 413 GPVLSIIKNSMQNAA 427
+ IIK++++ +
Sbjct: 539 HVIADIIKSAVERGS 553
>gi|167527362|ref|XP_001748013.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773431|gb|EDQ87070.1| predicted protein [Monosiga brevicollis MX1]
Length = 837
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 130/273 (47%), Positives = 173/273 (63%), Gaps = 4/273 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
LEQT V + L L +LKSV E A+DLE + YR++ G TCLMQ+STR+ED+++DT
Sbjct: 261 LEQTTCTWVGTREALVGLIERLKSVSELAIDLEAHSYRTYQGFTCLMQLSTRSEDYLIDT 320
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L LR + L +F DP KV+HGAD DI+WLQRD +Y+ NMFDTGQA+RVL R+
Sbjct: 321 LALRDDL-KLLNVIFADPAILKVLHGADSDILWLQRDHSLYIVNMFDTGQATRVLNFPRH 379
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL +LL H+C A+K+YQ ADWRVRPL +EML YAR DTH+LLYIYD + +L + E
Sbjct: 380 SLAWLLQHYCNFKADKKYQLADWRVRPLSEEMLHYARCDTHFLLYIYDRLHSELLAQGNE 439
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
N L VY+RS ++C Q YEK S+ + L + + L WRD
Sbjct: 440 QANL---LRAVYQRSKELCLQRYEKPFYSQATAEDALNRMSRSLVPSAVELFMALHAWRD 496
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
+AR +DES YVLP+ L+E+A + PT ++
Sbjct: 497 QVARDEDESPRYVLPDHMLLELASRAPTETGQI 529
>gi|242011128|ref|XP_002426307.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212510384|gb|EEB13569.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 737
Score = 259 bits (662), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 150/379 (39%), Positives = 212/379 (55%), Gaps = 29/379 (7%)
Query: 32 NKKKGDIVGGSAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNN-ANQPFQ------ 84
NK KG I S + D K+K T+ KPQ ++ VNN +PFQ
Sbjct: 145 NKYKGHITSASTQL---LNDIFSKTK------TMEKPQIHFEDKVNNDFKEPFQPRIKYK 195
Query: 85 HVWL-------QKSEDSG-RFIHPLD-NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEE 135
H L Q++E+ ++HP + L+ ++ + + +LE+TPF L+ +
Sbjct: 196 HNLLKPLAVIPQETENGDIEYLHPYEFELNKFQPLESQLLSQPPISYKTLEETPFHLITK 255
Query: 136 VKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYL 195
+++ + L+ E A+DLEH+ YRSF G TCL+QISTR D+V+DT+ LR ++ L
Sbjct: 256 PEEIDPMIENLEKCKEIAIDLEHHSYRSFQGFTCLLQISTRDTDYVIDTIALRSKLEG-L 314
Query: 196 REVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCG 255
++F +P KV HGAD DI+WLQRD +Y+ NMFDT QA ++L SL YL+ HFC
Sbjct: 315 NKIFTNPNIVKVFHGADLDILWLQRDLSLYVVNMFDTHQAGKLLNYSSLSLAYLMFHFCK 374
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 315
+ A K +Q ADWR+RPLPDE+L YAREDTHYLLYIYD ++ L E +N L V
Sbjct: 375 IVAQKHFQMADWRIRPLPDELLAYAREDTHYLLYIYDNLRNILIEKSNEQKNL---LRTV 431
Query: 316 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 375
S +C + Y+K E+ Y+ IY + +Q + L WRD AR DES
Sbjct: 432 INESTRICLKTYKKPNFDESGYMSIYTRSKKIFDNRQKYALQRLYAWRDSTARELDESLA 491
Query: 376 YVLPNRTLIEIAKQLPTTA 394
YVLPN ++ I++ LP A
Sbjct: 492 YVLPNHMMLNISEVLPREA 510
>gi|332024515|gb|EGI64713.1| Exosome component 10 [Acromyrmex echinatior]
Length = 885
Score = 258 bits (660), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 217/369 (58%), Gaps = 20/369 (5%)
Query: 38 IVGGSAPASV-KVKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQPFQ------------ 84
+V G+ +V D EK ++ I +PQ +K ++N+++P+
Sbjct: 158 VVNGTWNIKTNQVSDNSEKVRL-LGGKNIQRPQLMFKDKIDNSSKPWMPRIKDKPNSLKP 216
Query: 85 -HVWLQKSEDSGRFIHPLD-NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKEL 142
+ +++ E F HP + L + ++ + V+ L+ T F +++ D+ L
Sbjct: 217 LALHVEEDEHGEVFNHPYEFELDKFETLECQLKKRIPVEYKLLDDTNFVFIDKPADINIL 276
Query: 143 AAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDP 202
L++ E AVDLEH+ YR+F G+TCLMQIST D+++DTL LR ++ L E+F P
Sbjct: 277 LEDLRNHKEIAVDLEHHSYRTFQGITCLMQISTIQTDYLIDTLSLRSELYQ-LNEIFTKP 335
Query: 203 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 262
+ KV HGAD DI+WLQRD +Y+ NMFDT QA++ L L SL YLL+ +CG++ NK +
Sbjct: 336 SILKVFHGADMDILWLQRDLSLYVVNMFDTHQAAKQLNLPYLSLAYLLNKYCGIDPNKHF 395
Query: 263 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 322
Q ADWR+RPLP E+++YAREDTHYLLY+ D++K +L N L VY +S ++
Sbjct: 396 QLADWRIRPLPLELMKYAREDTHYLLYVKDMLKNELIDAANGKSNI---LKAVYDQSTEI 452
Query: 323 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 382
C++ Y K + +E S +++Y N +Q+ + L WRD+ AR +D+S GY+LPN
Sbjct: 453 CKRTYVKPIWTEESCMNMYRKSQKSFNNKQIYALLELHRWRDLTARQEDDSIGYILPNHM 512
Query: 383 LIEIAKQLP 391
L+ IA+ LP
Sbjct: 513 LLNIAETLP 521
>gi|195108841|ref|XP_001999001.1| GI24274 [Drosophila mojavensis]
gi|193915595|gb|EDW14462.1| GI24274 [Drosophila mojavensis]
Length = 901
Score = 258 bits (660), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 136/350 (38%), Positives = 211/350 (60%), Gaps = 24/350 (6%)
Query: 60 FHVPTITKPQEEYKIVVNNANQ-PFQH------------VWLQKSEDSGR---FIHPLDN 103
F I +PQ ++K+ V+N+ Q PF+ L + +D+G F+HP +
Sbjct: 190 FTAQNIMRPQMQFKVPVDNSAQNPFRPRLTEKPNSLKPLALLPEYDDTGNVVSFLHPYE- 248
Query: 104 LSVLDF--VDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQY 161
+L F + + + V P QT LV+ V L++ +L+ + A+D+EH+ Y
Sbjct: 249 FELLKFEPPSEQLQKQKPVLPAPPAQTELMLVDSVDALQQALTELRKASQIAIDVEHHSY 308
Query: 162 RSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRD 221
R+F+G+TCL+Q+STRT+D++ DTLKLR ++ L V DP K++HGAD DI WLQRD
Sbjct: 309 RTFMGITCLVQMSTRTKDYIFDTLKLREEMH-ILNLVLTDPKVLKILHGADLDIEWLQRD 367
Query: 222 FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAR 281
+Y+ NMFDT +A++ L + R SL +LL H+ ++ +K Q ADWR+RPLP +++ YAR
Sbjct: 368 LSLYIVNMFDTHRAAKALNMARLSLAFLLKHYLDLDVDKSLQLADWRMRPLPQKLIDYAR 427
Query: 282 EDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIY 341
+DTHYL+YIY+ +L++ +SE L VY+ S DVC++ Y K + +S+L +
Sbjct: 428 QDTHYLIYIYE----RLTNDLLQSEQGLQGLRMVYQMSTDVCKKRYTKPHIGPDSHLDLV 483
Query: 342 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ +QL + G+ WRD AR +DES GYVLPN +++IA+ LP
Sbjct: 484 RKTKRSFDNRQLHALRGIFVWRDSTARQEDESYGYVLPNHMMLQIAESLP 533
>gi|384501951|gb|EIE92442.1| hypothetical protein RO3G_16964 [Rhizopus delemar RA 99-880]
Length = 599
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 151/393 (38%), Positives = 229/393 (58%), Gaps = 38/393 (9%)
Query: 30 GKNKKKGDIVGGSAPASVKVKDRKEKSKVPF-HVPTITKPQEEYKIVVNNANQ-PFQHVW 87
GK K + +++ +AP ++ KE ++ F H + +PQ ++K V+N+N PF+
Sbjct: 116 GKVKNEDELMQ-AAPEVTQIT--KENTEYKFLHANKVIRPQMKFKDPVDNSNSTPFE--- 169
Query: 88 LQKSEDSGRFIHPLDNLSVLDF-VDKDI-----GDVEAVKPPS-------------LEQT 128
+K + PLD+ V++ + K + +++ V+ P + T
Sbjct: 170 -RKIKYKPHAQVPLDDTPVIENGIQKSLPHPYTYEIQHVEYPENMFQIREPKQYEPFDNT 228
Query: 129 PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLR 188
+ V+ L+E+ L+ V+E AVDLEH+ YRS+ G TCLMQ+STR +DF++DTL+LR
Sbjct: 229 SYIWVDTEAGLEEMMKALEDVEEIAVDLEHHNYRSYQGFTCLMQLSTRNQDFIIDTLELR 288
Query: 189 VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
++ L E F DPT KV+HGAD D++WLQRDFG+YL N+FDT ++VL+ + L Y
Sbjct: 289 DKLWR-LNEYFADPTIVKVLHGADSDVIWLQRDFGLYLVNLFDTYFPTKVLEFPHHGLAY 347
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
LL +C +A+K+YQ ADWR+RPLP EML YAR DTH+LLYIYD ++ +L S N
Sbjct: 348 LLKRYCNYDADKKYQLADWRIRPLPQEMLMYARADTHFLLYIYDCLRNELLSASSHGANL 407
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA------GLNAQQLAVVAGLCEW 362
+ +RS +V Q Y+K++ L +G + +NAQQLAV + W
Sbjct: 408 ---MQNCLQRSNEVALQKYDKDIYDAQGGLGPFGWKNMLSKWKYSMNAQQLAVFKAIHAW 464
Query: 363 RDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 395
RD AR +DES YVLPN L + +++PT ++
Sbjct: 465 RDHTARDEDESVRYVLPNHMLFALVERMPTESS 497
>gi|340723182|ref|XP_003399974.1| PREDICTED: exosome component 10-like [Bombus terrestris]
Length = 1295
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/341 (40%), Positives = 203/341 (59%), Gaps = 18/341 (5%)
Query: 65 ITKPQEEYKIVVNNANQPF-------------QHVWLQKSEDSGRFIHPLD-NLSVLDFV 110
I +PQ +K ++N+++P+ ++L++ E+ F HP + L +
Sbjct: 176 IQRPQLMFKDKIDNSSKPWCPRIKDKPNSLKPLAIYLEEGENGEIFSHPYEYELDMFVPP 235
Query: 111 DKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCL 170
+ + K LE+T ++++ D++ L LK E AVDLEH+ YRSF G+TCL
Sbjct: 236 NDQLKKSVPRKYKPLEETLLVMIKDPSDIELLIEDLKRYKEIAVDLEHHSYRSFQGITCL 295
Query: 171 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 230
MQIST D+++DTL LR ++ L E+F T KV HGAD DI WLQRD +Y+ NMF
Sbjct: 296 MQISTGDTDYLIDTLSLRSELHE-LNEIFTKSTILKVFHGADLDIQWLQRDLSLYVVNMF 354
Query: 231 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 290
DT QA++ L L SL YLL H+C V+ +K +Q ADWR+RPLP+++++YAREDTHYLLYI
Sbjct: 355 DTHQAAKQLNLPYLSLAYLLKHYCNVDPDKHFQMADWRIRPLPEKLIKYAREDTHYLLYI 414
Query: 291 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 350
D+++ L + N L VY RS ++C+ Y K + +E S + +Y N
Sbjct: 415 KDLLRNALIDVANGQINI---LKAVYDRSTEICKNTYIKPVWTEESCMIMYRKSQKMFNN 471
Query: 351 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+QL + L +WRD AR +D+S GYVLPN L+ IA+ LP
Sbjct: 472 KQLYALKELHKWRDQTARGEDDSIGYVLPNHMLLNIAETLP 512
>gi|224079457|ref|XP_002190659.1| PREDICTED: exosome component 10-like, partial [Taeniopygia guttata]
Length = 504
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/266 (50%), Positives = 180/266 (67%), Gaps = 11/266 (4%)
Query: 83 FQHVWLQKSEDSGRFIHP----LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKD 138
F H + + F HP L++ S D V K +++ +P +E+TP + + +
Sbjct: 244 FIHQQRTQKTEQDMFAHPYQYELEHFSPPDEVLKK-PELQMYRP--IEETPCHFITTLDE 300
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L EL KL + EFA+DLEH+ YRSFLGLTCLMQISTRTEDF++DTL LR + L E
Sbjct: 301 LVELNEKLMTCKEFALDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLALRSDMN-ILNET 359
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNA 258
F DP KV+HGAD D+ WLQRDFG+YL N+FDT QA+R+L L R+SL++LL +CGV+A
Sbjct: 360 FTDPAIVKVLHGADSDVEWLQRDFGLYLVNVFDTHQAARLLNLGRHSLDHLLKLYCGVDA 419
Query: 259 NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKR 318
+K+YQ ADWR+RPLP+EM+RYAR+DTHYLLYIYD ++ L KE T L V++R
Sbjct: 420 DKKYQLADWRIRPLPEEMIRYARDDTHYLLYIYDKVRELLWERGKEQP---TQLQVVWQR 476
Query: 319 SYDVCRQLYEKELLSENSYLHIYGLQ 344
S D+C + Y K L ++ SYL +Y Q
Sbjct: 477 SRDICLKKYIKPLFTDESYLDLYRRQ 502
>gi|350418690|ref|XP_003491936.1| PREDICTED: hypothetical protein LOC100746784 [Bombus impatiens]
Length = 1271
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 138/341 (40%), Positives = 203/341 (59%), Gaps = 18/341 (5%)
Query: 65 ITKPQEEYKIVVNNANQPF-------------QHVWLQKSEDSGRFIHPLD-NLSVLDFV 110
I +PQ +K ++N+++P+ ++L++ E+ F HP + L +
Sbjct: 176 IQRPQLTFKDKIDNSSKPWCPRIKDKPNSLKPLAIYLEEGENGEIFSHPYEYELDMFVPP 235
Query: 111 DKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCL 170
+ + K LE+T ++++ D+K L LK E AVDLEH+ YRSF G+TCL
Sbjct: 236 NDQLKKSVPKKYKPLEETLLVMIKDPSDIKLLIEDLKRYKEIAVDLEHHSYRSFQGITCL 295
Query: 171 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 230
MQIST D+++DTL LR ++ L E+F T KV HGAD DI WLQRD +Y+ NMF
Sbjct: 296 MQISTGDTDYLIDTLSLRSELHE-LNEIFTKSTILKVFHGADLDIQWLQRDLSLYVVNMF 354
Query: 231 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 290
DT QA++ L + SL YLL H+C V+ +K +Q ADWR+RPLP+++++YAREDTHYLLYI
Sbjct: 355 DTHQAAKQLNMPYLSLAYLLKHYCNVDPDKHFQMADWRIRPLPEKLMKYAREDTHYLLYI 414
Query: 291 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 350
D+++ L + N L VY RS ++C++ Y K + +E S + +Y N
Sbjct: 415 KDLLRNALIDVANGQINI---LKAVYDRSTEICKKTYIKPVWTEESCMIMYRKSQKMFNN 471
Query: 351 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+QL + L +WRD AR +D+S YVLPN L+ IA+ LP
Sbjct: 472 KQLYALKELHKWRDQTARGEDDSIAYVLPNHMLLNIAETLP 512
>gi|322799595|gb|EFZ20873.1| hypothetical protein SINV_12011 [Solenopsis invicta]
Length = 813
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/383 (37%), Positives = 218/383 (56%), Gaps = 26/383 (6%)
Query: 12 RGENGEGDGNEGG--FQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPFHVPTITKPQ 69
R + E + N+G +L+ GKN ++ ++ KD+ + S P+ KP
Sbjct: 160 RTNHNEQNSNQGSEKVRLLGGKNVQRPQLM---------FKDKIDNSSKPWMPRIKEKP- 209
Query: 70 EEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLD-NLSVLDFVDKDIGDVEAVKPPSLEQT 128
N+ +P +++++ E F HP + L + + V+ SL+ T
Sbjct: 210 --------NSLKPLA-LYIEEGEHGEVFNHPYEFELDKFQVPECQLKKRVCVRYKSLDDT 260
Query: 129 PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLR 188
F +++ D++ L L++ E AVDLEH+ YR+F G+TCLMQIST T D+++DTL LR
Sbjct: 261 RFVFIDKPTDIQTLLEDLRNHKEIAVDLEHHSYRTFQGITCLMQISTITTDYLIDTLTLR 320
Query: 189 VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
++ L E+F P+ KV HGAD DI+WLQRD +Y+ NMFDT QA+R L L SL +
Sbjct: 321 SELH-RLNEIFTKPSILKVFHGADMDILWLQRDLSLYVVNMFDTHQAARQLNLPYLSLAH 379
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ +C ++ NK++Q ADWR+RPLP E+ RYAREDT YLLYI D++ +L N
Sbjct: 380 LIKKYCDIDLNKQFQLADWRIRPLPLELTRYAREDTRYLLYIKDMLNNELIDAANGKSNI 439
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
L VY +S ++C++ Y K + +E S + +Y N +Q+ + L WRD+IAR
Sbjct: 440 ---LKAVYDQSTEICKRTYVKPIWTEESCIDLYRKSRKSFNNKQMYALVELHRWRDLIAR 496
Query: 369 ADDESTGYVLPNRTLIEIAKQLP 391
+D+S YVLP ++ IA+ LP
Sbjct: 497 EEDDSIDYVLPKHMMLNIAETLP 519
>gi|206598216|gb|ACI16020.1| exosome subunit Rrp6P [Bodo saltans]
Length = 741
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 143/376 (38%), Positives = 209/376 (55%), Gaps = 30/376 (7%)
Query: 64 TITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKD--IGDVEAVK 121
TI +PQ ++ V+N++ F+ +H D + L VD +E K
Sbjct: 149 TILRPQLTFETPVDNSHAKFRAT-----------VHHADGSTSLCDVDTHPYAELIEQFK 197
Query: 122 PPSL-------------EQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLT 168
P+L E TP VE V+ L L A L + E AVDLEH+ +RSF G+T
Sbjct: 198 VPTLQLLPTEDKQYLPLETTPLTFVETVEGLDALIAALSACREVAVDLEHHDFRSFQGIT 257
Query: 169 CLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 228
CLMQ+STR+ED++VD L+LR + L VF D KV HGA D+ WLQ+DFG+Y+ N
Sbjct: 258 CLMQLSTRSEDYIVDVLRLRSHMH-RLNRVFLDTNILKVFHGAKEDVRWLQKDFGLYVAN 316
Query: 229 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 288
MFDTG A + L + +SL + + HFCGV +K+YQ ADWR+RP+P EM+ YAR+DTHYLL
Sbjct: 317 MFDTGIALQTLHMP-HSLAFAVDHFCGVRLDKKYQTADWRIRPVPSEMIHYARQDTHYLL 375
Query: 289 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS-ENSYLHIYGLQGAG 347
Y++D +K L + + L VY+ S +C YEK +L + +Y G G
Sbjct: 376 YVHDRLKALLLHAEGRASVGNL-LVHVYQDSRRLCLTRYEKPMLDVDTTYREAMGKSLGG 434
Query: 348 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 407
L+A QL V+ + WRD AR DES ++ +++IA +LPT+A ++
Sbjct: 435 LSATQLEVLRVVFNWRDQAARDADESPPAIMHASAILQIASKLPTSAKEILACCAPVSLV 494
Query: 408 IERYMGPVLSIIKNSM 423
+ R +G + ++K ++
Sbjct: 495 VRRDIGHLCDLVKKTL 510
>gi|255075175|ref|XP_002501262.1| predicted protein [Micromonas sp. RCC299]
gi|226516526|gb|ACO62520.1| predicted protein [Micromonas sp. RCC299]
Length = 332
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 132/302 (43%), Positives = 185/302 (61%), Gaps = 8/302 (2%)
Query: 128 TPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKL 187
TP V+ + L+++ A L +E AVDLEH+ YRSF G TC++Q+STR DFVVD L+L
Sbjct: 33 TPCVFVDTPEALEDMVAHLDKSNEMAVDLEHHSYRSFQGFTCVIQVSTRRMDFVVDALEL 92
Query: 188 RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLE 247
R + L V DP KV HGAD D+ WLQRDFGIY+ MFDTGQA+RVL+L L
Sbjct: 93 RGLIRDALGPVMADPRVMKVFHGADMDVQWLQRDFGIYVVGMFDTGQAARVLELPSKGLA 152
Query: 248 YLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
YLL H+C V A+K +Q ADWRVRPL +EM+ YAR DTH+LLY+YD ++ +L ++ + +
Sbjct: 153 YLLDHYCSVKADKRFQLADWRVRPLSEEMISYARGDTHHLLYVYDRLRQQLDAVGR--GD 210
Query: 308 SDTPLTEVYK----RSYDVCRQLYEKELLSENSYLHIY--GLQGAGLNAQQLAVVAGLCE 361
P ++ + RS DVC LYEK + +Y Y L+ +LAV A L
Sbjct: 211 GSKPFRDLIRTTLDRSRDVCATLYEKPVTHPLTYHADYRKNRDAGDLDLPRLAVYAALHG 270
Query: 362 WRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKN 421
WRD RA+DES GYV+P ++ +A++ PT L + + + ++ G ++ II
Sbjct: 271 WRDERCRAEDESIGYVMPRALMLRLAREAPTNPRALLAVTRGDSPLVAKHSGELVDIISR 330
Query: 422 SM 423
++
Sbjct: 331 AL 332
>gi|195390616|ref|XP_002053964.1| GJ23053 [Drosophila virilis]
gi|194152050|gb|EDW67484.1| GJ23053 [Drosophila virilis]
Length = 904
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 131/350 (37%), Positives = 210/350 (60%), Gaps = 24/350 (6%)
Query: 60 FHVPTITKPQEEYKIVVNNANQ-PFQH------------VWLQKSEDSGR---FIHPLDN 103
F I +PQ ++K+ V+N+ Q PF+ L + +D+G F+HP +
Sbjct: 187 FTAQNIMRPQIQFKVPVDNSAQNPFKPRLKEKPNSLKPLALLPEYDDAGNVVSFLHPYE- 245
Query: 104 LSVLDF--VDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQY 161
+L F + + + + P QT LV+ V+ LK+ +L+ + A+D+EH+ Y
Sbjct: 246 FELLKFEPPKEQLQKQKPLLPAPPAQTELMLVDNVETLKQALEELRQAPQIAIDVEHHSY 305
Query: 162 RSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRD 221
R+F+G+TCL+Q+STRT+D++ DTL LR + L V DP K++HG D DI WLQRD
Sbjct: 306 RTFMGITCLVQMSTRTKDYIFDTLTLREDMH-ILNLVLTDPKVLKILHGGDLDIEWLQRD 364
Query: 222 FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAR 281
+Y+ NMFDT +A++ L + R SL +LL H+ ++ +K Q ADWR+RPLP +++ YAR
Sbjct: 365 LSLYIVNMFDTHRAAKALNMARLSLAFLLKHYLDLDVDKSLQLADWRMRPLPQKLIDYAR 424
Query: 282 EDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIY 341
+DTHYL+Y+Y+ +L++ ++E L VY+ S +VC++ Y K + +S+L +
Sbjct: 425 QDTHYLIYVYE----RLTNDLLQAEQGPQALRMVYQMSTEVCKKRYTKPHIGPDSHLDLV 480
Query: 342 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ +QL+ + G+ WRD AR +DES GYVLPN +++IA+ LP
Sbjct: 481 RKTKRSFDNRQLSALRGIFVWRDATARQEDESYGYVLPNHMMLQIAESLP 530
>gi|195037619|ref|XP_001990258.1| GH19240 [Drosophila grimshawi]
gi|193894454|gb|EDV93320.1| GH19240 [Drosophila grimshawi]
Length = 911
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 130/350 (37%), Positives = 206/350 (58%), Gaps = 23/350 (6%)
Query: 60 FHVPTITKPQEEYKIVVNN-ANQPFQHVWLQK---------------SEDSGRFIHPLDN 103
F P I +PQ +K+ V+N A PFQ +K +++ F+HP +
Sbjct: 195 FTAPNIMRPQMRFKVPVDNSATNPFQPRLTEKPNSLKPLALLPEYDEADNIVSFLHPYE- 253
Query: 104 LSVLDF--VDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQY 161
+L F + + P E+T LV+ V+ L++ A+L+ + A+D+EH+ Y
Sbjct: 254 FELLKFEPAKEQLQKQNPQMPAPPEKTELMLVDSVEKLQQALAELRLAHQIAIDVEHHSY 313
Query: 162 RSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRD 221
R+F+G+TCL+Q+STRT+D++ DTL LR + L V DP K++HG D DI WLQRD
Sbjct: 314 RTFMGITCLVQMSTRTKDYIFDTLILRDDMH-ILNLVLTDPKVLKILHGGDLDIEWLQRD 372
Query: 222 FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAR 281
+Y+ NMFDT +A++ L L R SL +LL + ++ +K Q ADWR+RPLP +++ YAR
Sbjct: 373 LSLYIVNMFDTHRAAKALNLARLSLAFLLKFYLDMDVDKSLQLADWRMRPLPQKLIDYAR 432
Query: 282 EDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIY 341
+DTHYL+YIY+ + ++ + + + L VY++S D+C++ Y K + +S+L +
Sbjct: 433 QDTHYLIYIYERL---VNDLLQSEQGQSHSLRMVYQQSTDICKKRYTKPYIGPDSHLDLV 489
Query: 342 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ +QL + G+ WRD AR +DES GYVLPN +++IA+ LP
Sbjct: 490 RKTKRSFDNRQLYALRGIFTWRDATARQEDESYGYVLPNHMMLQIAESLP 539
>gi|198424231|ref|XP_002122101.1| PREDICTED: similar to exosome component 10 [Ciona intestinalis]
Length = 669
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 132/271 (48%), Positives = 178/271 (65%), Gaps = 11/271 (4%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
V+ V L L +LK E AVDLE + +RS+ G+TCLMQ+STR D++VDTL LR +
Sbjct: 119 FVDGVNGLNMLIRELKQESEIAVDLEAHSFRSYQGITCLMQLSTRKTDYIVDTLALRANL 178
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLH 251
L +VF +P KV HGAD+DI WLQRDFG+Y+ N+FDTGQA+RVL+L S EYLL
Sbjct: 179 N-ILNQVFTNPKIVKVFHGADQDIKWLQRDFGVYVVNLFDTGQAARVLELGL-SREYLLK 236
Query: 252 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP 311
H+C V ++K+YQ ADWR RPL +ML+YA+EDTHYLLYIYD+MK+ L E
Sbjct: 237 HYCKVESDKKYQKADWRERPLSKDMLKYAQEDTHYLLYIYDMMKLDLL----EKAGGVGL 292
Query: 312 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG----LNAQQLAVVAGLCEWRDVIA 367
+ +V S D+C YEK ++ + S+L + +GAG Q+L + + WRD +A
Sbjct: 293 MHKVIGNSRDICLLKYEKLIIDDTSHLKLLR-KGAGKIEDWEPQELEALRLIYMWRDELA 351
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLR 398
R DES GY++PN+ L++IAK LP T +R
Sbjct: 352 RQKDESCGYIMPNKMLVQIAKTLPQTVQDVR 382
Score = 149 bits (375), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 111/174 (63%), Gaps = 10/174 (5%)
Query: 229 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 288
+FDTGQA+R LKL SLEYLL H+C V ++K++Q ADWR RPL +ML+YA++DTHYLL
Sbjct: 430 LFDTGQAARELKLG-CSLEYLLKHYCKVESDKKFQKADWRERPLSKDMLKYAQKDTHYLL 488
Query: 289 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG- 347
YIYD+MK+ L E + +V S D+C YEK ++ + S+ + +GAG
Sbjct: 489 YIYDMMKLDLL----EKAGDAKLMRKVIGNSRDICLLKYEKLIIDDTSHRKLLR-KGAGK 543
Query: 348 ---LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 398
Q+L + + WRD +AR DES GYVLPN+ L++IAK +P T LR
Sbjct: 544 IEDWEPQELEALRLIYMWRDKLARQMDESCGYVLPNKLLVQIAKTMPQTEQDLR 597
>gi|393243266|gb|EJD50781.1| hypothetical protein AURDEDRAFT_159928 [Auricularia delicata
TFB-10046 SS5]
Length = 837
Score = 251 bits (642), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 146/385 (37%), Positives = 213/385 (55%), Gaps = 23/385 (5%)
Query: 60 FHVPTITKPQEEYKIVVNNANQPFQHVWLQKSE------------DSGRFIHPLD-NLSV 106
H PTI KPQ ++K V+N ++ +K+ DSG HP ++
Sbjct: 171 LHDPTIHKPQLQFKPPVDNFATSWRPALSEKAHAKRPLEEDGMEVDSGLPYHPYRYEITH 230
Query: 107 LDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLG 166
+++ D E S E PF LV + ++ +KL+S E AVDLEH+ YR++ G
Sbjct: 231 IEYADHMFEAPELSPQKSFEAIPFTLVTTPHEFAQMLSKLRSAREMAVDLEHHSYRTYAG 290
Query: 167 LTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYL 226
CLMQISTR ED+VVD L +R +V P L EVF D KV HGA+ DIVWLQ+DF +Y+
Sbjct: 291 FLCLMQISTREEDWVVDLLAVREEV-PKLAEVFADENIVKVFHGAESDIVWLQQDFSLYI 349
Query: 227 CNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHY 286
N+FDT AS+VL+ ++SL LL + +K YQ ADWR+RP+P EML YAR DTH+
Sbjct: 350 VNLFDTYHASKVLEFPKHSLASLLEAYTDFTPDKRYQLADWRIRPIPAEMLLYARSDTHF 409
Query: 287 LLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHI 340
LL+IYD K++ + + S +D + EV +RS + + Y E N + +
Sbjct: 410 LLHIYD--KLRELLLQRSSGTADL-IREVLRRSEETALRTYVLETYDTQRGSGANGWEIL 466
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
GL+ LAV + EWRD +AR DEST YV+ N +L ++A PT A+L
Sbjct: 467 AKKWNKGLHGLPLAVYKAVHEWRDTVARTTDESTRYVMGNSSLFKLADAQPTDMAQLTAA 526
Query: 401 LKSKHSYIERYMGPVLSIIKNSMQN 425
L + + + +L++I ++++
Sbjct: 527 LHPMSAIVRKRGKDLLNVISRAVKD 551
>gi|195501501|ref|XP_002097822.1| GE26425 [Drosophila yakuba]
gi|194183923|gb|EDW97534.1| GE26425 [Drosophila yakuba]
Length = 900
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 133/351 (37%), Positives = 210/351 (59%), Gaps = 26/351 (7%)
Query: 60 FHVPTITKPQEEYKIVVNNANQ-PF------------QHVWLQKSEDSGR---FIHPLDN 103
F I +PQ ++K V+N+ Q PF L + +D+G ++HP +
Sbjct: 184 FTAKNIVRPQTQFKEPVDNSAQNPFVPRLKEKPNSLKPLALLPEYDDAGNIQSYLHPYE- 242
Query: 104 LSVLDF--VDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQY 161
+L F + + V P + T +V+ V+ L++ +L+ + A+D+EH+ Y
Sbjct: 243 FELLKFQPAADQLQKQKPVLPALMANTELMVVDTVEKLEQALEELRQAPQIAIDVEHHSY 302
Query: 162 RSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRD 221
R+F+G+TCL+Q+STR++D++ DTL LR ++ L V DP K K++HGAD DI WLQRD
Sbjct: 303 RTFMGITCLVQMSTRSKDYIFDTLILRDEMH-ILNLVLTDPKKLKILHGADLDIEWLQRD 361
Query: 222 FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAR 281
+Y+ NMFDT +A++ L L R SL YLL H+ ++ +K Q ADWR+RPLP +++ YAR
Sbjct: 362 LSLYIVNMFDTHRAAKALNLARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYAR 421
Query: 282 EDTHYLLYIYDIMKIKLSSMPKESENSDTPLT-EVYKRSYDVCRQLYEKELLSENSYLHI 340
+DTH+L+Y+Y+ M L +++D L VY++S DVC++ Y K + S+L +
Sbjct: 422 QDTHFLIYVYERMTNDLL-----QQHADPGLLGSVYQQSTDVCKKRYNKPHIGPESHLDL 476
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ +QL + G+ EWRD AR++DES GYVLPN +++IA+ LP
Sbjct: 477 VRKTKRSFDNRQLYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLP 527
>gi|17531757|ref|NP_496283.1| Protein CRN-3, isoform a [Caenorhabditis elegans]
gi|3874231|emb|CAA90108.1| Protein CRN-3, isoform a [Caenorhabditis elegans]
gi|31747255|gb|AAP57299.1| cell death-related nuclease 3 [Caenorhabditis elegans]
Length = 876
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 147/399 (36%), Positives = 228/399 (57%), Gaps = 39/399 (9%)
Query: 48 KVKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQPF------QH--------VWLQKSED 93
K ++R+E++ + + KPQ+ Y I +N+ PF +H + L ++
Sbjct: 173 KFRERREEAA---QMVVLEKPQKTYNISSDNSQAPFSSKLTVKHHAIEKRTGIVLHDDDE 229
Query: 94 SGR--FI---------HPLDNLSVLDFV--DKDIGDVEAVKPPSLEQTPFKLVEEVKDLK 140
SGR +I HP +L F + + E +K +L+ TP +++ + L+
Sbjct: 230 SGRRDWISAETETEEEHPY-IAEILHFKVPEAQLKSAECLKFTALKDTPLTMIDTKEKLE 288
Query: 141 ELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFK 200
L L SV EFAVDLEH+Q RS+LGLTCL+QISTR EDF++D + VG L E F
Sbjct: 289 ALTKTLNSVKEFAVDLEHHQMRSYLGLTCLIQISTRDEDFIIDPFPIWDHVG-MLNEPFA 347
Query: 201 DPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 260
+P KV HG+D D++WLQRD+G+++ N+FDT A + LK + SL YL F V +K
Sbjct: 348 NPRILKVFHGSDSDVLWLQRDYGVHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDK 407
Query: 261 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSY 320
+YQ ADWR RPL + M+ YAREDTHYLLY YD+++ +L + +++++ L VY S
Sbjct: 408 QYQLADWRARPLRNAMINYAREDTHYLLYSYDMLREQL--LKQDTKD----LANVYSESS 461
Query: 321 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 380
D+C ++Y+K + + YL + LN +Q + L +WRDV+ARA+DES +VLPN
Sbjct: 462 DLCIKVYKKPVFNPKGYLTEIKFRFT-LNTRQDYALTHLFKWRDVVARAEDESPHFVLPN 520
Query: 381 RTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
++ +++ LP + ++++ G +L II
Sbjct: 521 HMMLSLSETLPRDVGGIYACCNPLPYFVKQRTGDILKII 559
>gi|308473314|ref|XP_003098882.1| hypothetical protein CRE_31359 [Caenorhabditis remanei]
gi|308268021|gb|EFP11974.1| hypothetical protein CRE_31359 [Caenorhabditis remanei]
Length = 860
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 155/431 (35%), Positives = 238/431 (55%), Gaps = 48/431 (11%)
Query: 41 GSAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQPF---QHVWLQK------- 90
G+ A+ + R+E +++ H KPQ+ Y I+ +N+ PF +H ++K
Sbjct: 160 GTVLAAKFRERREEAAQMIVH----EKPQKTYNIIADNSVAPFVSVKHHAIEKRSGIVVV 215
Query: 91 -SEDSGRF-----------IHPLDNLSVLDFV--DKDIGDVEAVKPPSLEQTPFKLVEEV 136
++SGR HP +L+F + + E K +L+ T +V+
Sbjct: 216 DDDESGRIGWTNAEAETEEEHPY-IAEILNFKVPESQLESAEPKKFNALKNTQLTMVDTK 274
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
+ L+ L L SV EF+VDLEH++ R++LGLTCL+QISTR EDF++D + +G L
Sbjct: 275 EKLEALKDTLNSVTEFSVDLEHHEMRTYLGLTCLIQISTRDEDFIIDPFPMWDCIG-ILN 333
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGV 256
E F +P KV HGAD D++WLQRDFGI++ N+FDT A + LK + SL YL F V
Sbjct: 334 EPFTNPKILKVFHGADNDVLWLQRDFGIHIVNLFDTYVAMKKLKYPKFSLAYLAFRFADV 393
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
+K+YQ ADWR RPL + M+ YAREDTHYLLY YD+++ +L K+ L VY
Sbjct: 394 ILDKQYQLADWRARPLRNAMINYAREDTHYLLYSYDMLREQLLKQDKKD------LNVVY 447
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
D+C ++Y+K + YL L+ N++Q + L +WRDV+AR +DES +
Sbjct: 448 SECNDLCVRVYKKPVFKPKGYLTDLKLRFT-FNSRQDHALTSLYKWRDVVARQEDESPQF 506
Query: 377 VLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKL 436
VLPN L+ +A+QLP + ++++ G +L II V A+++
Sbjct: 507 VLPNHMLLALAEQLPRDVGGIYACCNPLPHFVKKLAGQILKII-----------VEAREV 555
Query: 437 KEERMEVASEE 447
K E+++V ++E
Sbjct: 556 KLEKVKVTAKE 566
>gi|74187922|dbj|BAE37100.1| unnamed protein product [Mus musculus]
Length = 497
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/215 (56%), Positives = 156/215 (72%), Gaps = 4/215 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP LV + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 285 ETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 345 LRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 404 DHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELW---ERGN 460
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIY 341
+ L V++RS D+C + + K + ++ SYL +Y
Sbjct: 461 HQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELY 495
>gi|146099475|ref|XP_001468653.1| exosome subunit rrp6p homologue, putative [Leishmania infantum
JPCM5]
gi|134073021|emb|CAM71740.1| exosome subunit rrp6p homologue, putative [Leishmania infantum
JPCM5]
Length = 743
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 156/431 (36%), Positives = 228/431 (52%), Gaps = 20/431 (4%)
Query: 1 MDVSFDEFSKARGENGEGDGNEGGFQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPF 60
+D DE R + E G +L +N++ G +V +A A V
Sbjct: 110 VDSLLDEVKGRRLDAQEQLSVTFGSELAASQNREGGVVVADAASARAGV----------L 159
Query: 61 HVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFI---HPLDNL-SVLDFVDKDIGD 116
+ I +PQ + V+N+ PF + S S + HP ++L + +
Sbjct: 160 RLAHIRRPQLLFDTPVDNSAAPFVPYYYDASGQSHVGVAGQHPFESLIKAFSIPESQMLP 219
Query: 117 VEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTR 176
V P L+ P V+ ++ + AKL E AVDLEH+ + S+ G TCLMQISTR
Sbjct: 220 RAEVPPVPLDACPLTFVDTSVAMQAMIAKLLLASEIAVDLEHHDFYSYQGFTCLMQISTR 279
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
EDF+VD LKLR +G L VF +P+ KV+HGA DI WLQ+DF +Y+ N FDTG A
Sbjct: 280 EEDFIVDCLKLRSSMGA-LAPVFLNPSILKVLHGAREDIRWLQKDFSLYVVNFFDTGVAL 338
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK- 295
+ L + +SL + + HFC V NK+YQ ADWRVRPL EM+ YAR+DTH+LLY+YD +K
Sbjct: 339 QTLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPLSAEMVHYARQDTHFLLYVYDRLKA 397
Query: 296 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQQLA 354
+ L+S + S S L VY S + Q+YEK ++ E +Y G +GLN Q
Sbjct: 398 LLLNSEGRASIGS--LLVHVYNESKQLSLQIYEKPSVVPEETYKIALGRSLSGLNKVQEK 455
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 414
V + WRD AR D+S VL +++ IA +LPTTA L R + + +
Sbjct: 456 VARDVFNWRDSAAREVDDSPTAVLHLSSVLSIASKLPTTAKALLRCCAPATAVVRDNVAL 515
Query: 415 VLSIIKNSMQN 425
++ ++K+++ +
Sbjct: 516 LVDLVKDAVAS 526
>gi|348690893|gb|EGZ30707.1| hypothetical protein PHYSODRAFT_553621 [Phytophthora sojae]
Length = 1507
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/376 (38%), Positives = 223/376 (59%), Gaps = 46/376 (12%)
Query: 67 KPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKD---------IGDV 117
KPQ+ + ++N++ PF +K +H L++ + + D+D ++
Sbjct: 168 KPQDRFDEKIDNSDAPFVSKLREK-------VHALNDGAAVVADDEDDEMAPRHPYFPEI 220
Query: 118 EAVK--PPSLEQT--PFKLVEEVK----------DLKELAAKLKSVDE--FAVDLEHNQY 161
+A+K P LE + P+++VE K L ++ L +V+ AVDLEH+ Y
Sbjct: 221 KALKYAPWQLEASDEPYEMVELEKASYLWVDSEEKLVQMMKSLTAVEARVIAVDLEHHSY 280
Query: 162 RSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRD 221
RS++GLTCLMQIST EDF+VDTL LR ++ L +VF DP K KV+HG+D DI+WLQRD
Sbjct: 281 RSYMGLTCLMQISTAREDFLVDTLALRGKLQT-LNQVFCDPAKVKVLHGSDMDILWLQRD 339
Query: 222 FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAR 281
G+Y+ N+FDTG+A+R+L+ R SL Y+L C ++A+K+YQ ADWR RPL M++YAR
Sbjct: 340 LGLYIVNLFDTGRAARLLQYPRFSLAYMLKRHCNIDADKQYQLADWRTRPLDKNMVKYAR 399
Query: 282 EDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIY 341
EDT YLL+IYD +K +L + +++ ++ L + + S +C Q+YEK +E L +
Sbjct: 400 EDTRYLLFIYDRLKKEL--LQAGAKSRESFLFQTLQNSSKLCLQVYEKPQPTEEDALALG 457
Query: 342 GLQGAGLNAQQLA-----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 396
+N Q+L+ V+ L WRD +AR +DES YV+ N L+++ K LP + +
Sbjct: 458 EKLKGTVNTQELSELQKRVIVALYLWRDRVARQEDESVAYVMANHVLMKLTKHLPVRSDE 517
Query: 397 LRR------LLKSKHS 406
L R LL KH+
Sbjct: 518 LFRACHPVPLLIRKHA 533
>gi|301119505|ref|XP_002907480.1| exosome complex exonuclease RRP6-like protein [Phytophthora
infestans T30-4]
gi|262105992|gb|EEY64044.1| exosome complex exonuclease RRP6-like protein [Phytophthora
infestans T30-4]
Length = 1465
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 138/334 (41%), Positives = 208/334 (62%), Gaps = 29/334 (8%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDE--FAVDLEHNQYRSFLGLTCLMQISTRTEDFVV 182
L++ + V+ ++L ++ L + + AVDLEH+ YRS++GLTCLMQIST EDF+V
Sbjct: 239 LDKVSYLWVDSEENLMQMMKSLTAAEARVIAVDLEHHSYRSYMGLTCLMQISTAQEDFLV 298
Query: 183 DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE 242
DTL LR ++ L +VF DP K KV+HG+D DI+WLQRD G+Y+ N+FDTG+A+R+L+
Sbjct: 299 DTLALRGKLQT-LNQVFCDPEKVKVLHGSDMDILWLQRDLGLYIVNLFDTGRAARLLQYP 357
Query: 243 RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 302
R SL Y+L C ++A+K+YQ ADWR RPL M++YAREDT YLL+IYD +K +L +
Sbjct: 358 RFSLAYMLKRHCNIDADKQYQLADWRTRPLDKNMVKYAREDTRYLLFIYDRLKKEL--LQ 415
Query: 303 KESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI-YGLQGA----GLNAQQLAVVA 357
+++ ++ L + + S +C Q+YEK +E L + L+G L+A Q V+
Sbjct: 416 AGAKSRESLLFQTLQNSSKLCLQVYEKPQPTEEDALAVGEKLKGTVYLRDLSALQKRVIV 475
Query: 358 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPV-L 416
L WRD +AR +DES YV+PN L+++ K LP + L R+ PV L
Sbjct: 476 ALYLWRDRVARQEDESVAYVMPNHVLMKLTKHLPVRSDDLFRVCH-----------PVPL 524
Query: 417 SIIKNSMQNAANFEVIAQKLKEERMEVASEETEV 450
I K+++Q I + + E+ ++A+EET+
Sbjct: 525 LIRKHALQ-------ITKMIVAEKTKLAAEETKT 551
>gi|383792210|gb|AFH41845.1| FI19715p1 [Drosophila melanogaster]
Length = 930
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 137/375 (36%), Positives = 214/375 (57%), Gaps = 24/375 (6%)
Query: 35 KGDIVGGSAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQ-PF---------- 83
+G GS + R S F I +PQ +++ V+N+ Q PF
Sbjct: 189 QGTPKAGSWNRTTGTPQRSMVSARLFTAKNIVRPQTQFREPVDNSAQNPFVPRLKEKPNS 248
Query: 84 --QHVWLQKSEDSGR---FIHPLDNLSVLDFV--DKDIGDVEAVKPPSLEQTPFKLVEEV 136
L + +D+G ++HP + +L F ++ + V P + +T +V+ V
Sbjct: 249 LKPLALLPEYDDAGNVQSYLHPYE-FELLKFQPPEEQFQKQKPVLPALMAETELMVVDTV 307
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
+ LK+ +L+ + A+D+EH+ YR+F+G+TCL+Q+STR++D++ DTL LR + L
Sbjct: 308 EKLKQALEELRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKDYIFDTLILRDDMH-ILN 366
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGV 256
V DP K K++HGAD DI WLQRD +Y+ NMFDT +A++ L + R SL YLL H+ +
Sbjct: 367 LVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNMARLSLAYLLKHYLDL 426
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
+ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+Y M L E L VY
Sbjct: 427 DVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYGRMTNDLLQQHAEP----GLLGSVY 482
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
++S DVC++ Y K + S+L + + +QL + G+ EWRD AR++DES GY
Sbjct: 483 QQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQLYALRGIFEWRDATARSEDESYGY 542
Query: 377 VLPNRTLIEIAKQLP 391
VLPN +++IA+ LP
Sbjct: 543 VLPNHMMLQIAESLP 557
>gi|341889055|gb|EGT44990.1| hypothetical protein CAEBREN_17638 [Caenorhabditis brenneri]
Length = 864
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 151/414 (36%), Positives = 234/414 (56%), Gaps = 47/414 (11%)
Query: 61 HVPTITKPQEEYKIVVNNANQPF------QHVWLQK--------SEDSGRFI-------- 98
+ + KPQ+ Y I +N+ PF +H ++K ++SG+
Sbjct: 176 QIVVLEKPQKTYSIGADNSAAPFASKLTVKHHAIEKRTGITLIDDDESGKRDWNRAETET 235
Query: 99 ---HPLDNLSVLDF-VDKD-IGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFA 153
HP +L F V KD + E +K L++T +V+ + L+ L L +V EFA
Sbjct: 236 EEEHPY-IAEILHFKVPKDQMTPAEPIKFKKLDETTLTMVDTKEKLEALRDVLNNVKEFA 294
Query: 154 VDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADR 213
VDLEHN RS+LGL+CL+QISTR EDF++D + ++G L + F +PT KV+HG+D
Sbjct: 295 VDLEHNDMRSYLGLSCLIQISTRDEDFIIDPFPIWDEIG-ILNDPFANPTILKVLHGSDN 353
Query: 214 DIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLP 273
D++WLQRDFG+++ N+FDT A + LK + +L YL+ F V +K+YQ ADWR RPL
Sbjct: 354 DVLWLQRDFGVHIVNLFDTYVAMKKLKFPKFNLAYLVSRFADVILDKQYQLADWRARPLS 413
Query: 274 DEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS 333
M+ YAREDTHYLLY YD+++ +L K++E L +Y DVC ++Y+K + +
Sbjct: 414 KAMINYAREDTHYLLYCYDMLREQLL---KQNEQD---LASMYSECTDVCVRVYKKPVFN 467
Query: 334 ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 393
Y+ L+ A LN++Q V+ L WRD +ARA+DES +VLPN L+ I++ LP
Sbjct: 468 PKGYMTEIKLRFA-LNSRQDYVLTNLYRWRDTVARAEDESPQFVLPNTMLLNISESLPRD 526
Query: 394 AAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEE 447
+ ++++ +G +L I+ V A+ +K E++E ++E
Sbjct: 527 IGSIYGCCNPLPLFVKKRVGDILKIV-----------VQARDVKLEKIERTTKE 569
>gi|189182142|gb|ACD81847.1| LD13130p [Drosophila melanogaster]
Length = 930
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 137/375 (36%), Positives = 214/375 (57%), Gaps = 24/375 (6%)
Query: 35 KGDIVGGSAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQ-PF---------- 83
+G GS + R S F I +PQ +++ V+N+ Q PF
Sbjct: 189 QGTPKAGSWNRTTGTPQRSMVSARLFTAKNIVRPQTQFREPVDNSAQNPFVPRLKEKPNS 248
Query: 84 --QHVWLQKSEDSGR---FIHPLDNLSVLDFV--DKDIGDVEAVKPPSLEQTPFKLVEEV 136
L + +D+G ++HP + +L F ++ + V P + +T +V+ V
Sbjct: 249 LKPLALLPEYDDAGNVQSYLHPYE-FELLKFQPPEEQFQKQKPVLPALMAETELMVVDTV 307
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
+ LK+ +L+ + A+D+EH+ YR+F+G+TCL+Q+STR++D++ DTL LR + L
Sbjct: 308 EKLKQALEELRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKDYIFDTLILRDDMH-ILN 366
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGV 256
V DP K K++HGAD DI WLQRD +Y+ NMFDT +A++ L + R SL YLL H+ +
Sbjct: 367 LVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNMARLSLAYLLKHYLDL 426
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
+ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+Y M L E L VY
Sbjct: 427 DVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYGRMTNDLLQQHAEP----GLLGSVY 482
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
++S DVC++ Y K + S+L + + +QL + G+ EWRD AR++DES GY
Sbjct: 483 QQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQLYALRGIFEWRDATARSEDESYGY 542
Query: 377 VLPNRTLIEIAKQLP 391
VLPN +++IA+ LP
Sbjct: 543 VLPNHMMLQIAESLP 557
>gi|194900862|ref|XP_001979974.1| GG21034 [Drosophila erecta]
gi|190651677|gb|EDV48932.1| GG21034 [Drosophila erecta]
Length = 900
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 138/376 (36%), Positives = 216/376 (57%), Gaps = 26/376 (6%)
Query: 35 KGDIVGGSAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQ-PF---------- 83
+G GS + R S F I +PQ ++K V+N+ Q PF
Sbjct: 159 QGTPKAGSWNKTTGTPQRNMVSARLFTAKNIVRPQTQFKEPVDNSAQNPFVPRLKEKPNS 218
Query: 84 --QHVWLQKSEDSGR---FIHPLDNLSVLDF--VDKDIGDVEAVKPPSLEQTPFKLVEEV 136
L + +D+G ++HP + +L F + + + V P + T +V+ V
Sbjct: 219 LKPLALLPEYDDTGNIHSYLHPYE-FELLKFQPLADQLQKQKPVLPALMADTELMVVDTV 277
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
+ L++ +L+ + A+D+EH+ YR+F+G+TCL+Q+STR++D++ DTL LR + L
Sbjct: 278 EKLQQALEELRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKDYIFDTLILREDMH-ILN 336
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGV 256
V DP K K++HGAD DI WLQRD +Y+ NMFDT +A++ L L R SL YLL ++ +
Sbjct: 337 LVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNLARLSLAYLLKYYLDL 396
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP-LTEV 315
+ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+Y+ M L + +DT L V
Sbjct: 397 DVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYERMTNDLL-----QQQTDTGLLASV 451
Query: 316 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 375
Y++S DVC++ Y K + S+L + + +QL + G+ EWRD AR +DES G
Sbjct: 452 YQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQLYALRGIFEWRDATARLEDESYG 511
Query: 376 YVLPNRTLIEIAKQLP 391
YVLPN +++IA+ LP
Sbjct: 512 YVLPNHMMLQIAESLP 527
>gi|161078302|ref|NP_001097795.1| Rrp6 [Drosophila melanogaster]
gi|158030263|gb|AAF55107.3| Rrp6 [Drosophila melanogaster]
Length = 900
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 137/375 (36%), Positives = 214/375 (57%), Gaps = 24/375 (6%)
Query: 35 KGDIVGGSAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQ-PF---------- 83
+G GS + R S F I +PQ +++ V+N+ Q PF
Sbjct: 159 QGTPKAGSWNRTTGTPQRSMVSARLFTAKNIVRPQTQFREPVDNSAQNPFVPRLKEKPNS 218
Query: 84 --QHVWLQKSEDSGR---FIHPLDNLSVLDFV--DKDIGDVEAVKPPSLEQTPFKLVEEV 136
L + +D+G ++HP + +L F ++ + V P + +T +V+ V
Sbjct: 219 LKPLALLPEYDDAGNVQSYLHPYE-FELLKFQPPEEQFQKQKPVLPALMAETELMVVDTV 277
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
+ LK+ +L+ + A+D+EH+ YR+F+G+TCL+Q+STR++D++ DTL LR + L
Sbjct: 278 EKLKQALEELRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKDYIFDTLILRDDMH-ILN 336
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGV 256
V DP K K++HGAD DI WLQRD +Y+ NMFDT +A++ L + R SL YLL H+ +
Sbjct: 337 LVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNMARLSLAYLLKHYLDL 396
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
+ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+Y M L E L VY
Sbjct: 397 DVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYGRMTNDLLQQHAEP----GLLGSVY 452
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
++S DVC++ Y K + S+L + + +QL + G+ EWRD AR++DES GY
Sbjct: 453 QQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQLYALRGIFEWRDATARSEDESYGY 512
Query: 377 VLPNRTLIEIAKQLP 391
VLPN +++IA+ LP
Sbjct: 513 VLPNHMMLQIAESLP 527
>gi|398022862|ref|XP_003864593.1| unnamed protein product [Leishmania donovani]
gi|322502828|emb|CBZ37911.1| unnamed protein product [Leishmania donovani]
Length = 743
Score = 249 bits (636), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 155/431 (35%), Positives = 228/431 (52%), Gaps = 20/431 (4%)
Query: 1 MDVSFDEFSKARGENGEGDGNEGGFQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPF 60
+D DE R + E G +L +N++ G +V +A A V
Sbjct: 110 VDSLLDEVKGRRLDAQEQLSVTFGSELAASQNREGGVVVADAASARAGV----------L 159
Query: 61 HVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFI---HPLDN-LSVLDFVDKDIGD 116
+ I +PQ + V+N+ PF + S S + HP ++ + + +
Sbjct: 160 RLAHIRRPQLLFDTPVDNSAAPFVPYYYDASGQSHVGVAGQHPFESVIKAFSIPESQMLP 219
Query: 117 VEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTR 176
V P L+ P V+ ++ + AKL E AVDLEH+ + S+ G TCLMQISTR
Sbjct: 220 RAEVPPVPLDACPLTFVDTSVAMQAMIAKLLLASEIAVDLEHHDFYSYQGFTCLMQISTR 279
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
EDF+VD LKLR +G L VF +P+ KV+HGA DI WLQ+DF +Y+ N FDTG A
Sbjct: 280 EEDFIVDCLKLRSSMGA-LAPVFLNPSILKVLHGAREDIRWLQKDFSLYVVNFFDTGVAL 338
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK- 295
+ L + +SL + + HFC V NK+YQ ADWRVRPL EM+ YAR+DTH+LLY+YD +K
Sbjct: 339 QTLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPLSAEMVHYARQDTHFLLYVYDRLKA 397
Query: 296 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQQLA 354
+ L+S + S S L VY S + Q+YEK ++ E +Y G +GLN Q
Sbjct: 398 LLLNSEGRASIGS--LLVHVYNESKQLSLQIYEKPSVVPEETYKIALGRSLSGLNKVQEK 455
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 414
V + WRD AR D+S VL +++ IA +LPTTA L R + + +
Sbjct: 456 VARDVFNWRDSAAREVDDSPTAVLHLSSVLSIASKLPTTAKALLRCCAPATAVVRDNVAL 515
Query: 415 VLSIIKNSMQN 425
++ ++K+++ +
Sbjct: 516 LVDLVKDAVAS 526
>gi|195570818|ref|XP_002103401.1| GD20396 [Drosophila simulans]
gi|194199328|gb|EDX12904.1| GD20396 [Drosophila simulans]
Length = 896
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 140/405 (34%), Positives = 232/405 (57%), Gaps = 28/405 (6%)
Query: 33 KKKGDIVGGSAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQ-PF-------- 83
K +G GS + R S F I +PQ +++ V+N+ Q PF
Sbjct: 157 KTQGTPKAGSWNRTTGTPQRNMVSTRLFTAKNIIRPQTQFREPVDNSAQNPFVPRLKEKP 216
Query: 84 ----QHVWLQKSEDSGR---FIHPLDNLSVLDF--VDKDIGDVEAVKPPSLEQTPFKLVE 134
L + +D+G ++HP + +L F + + + V P + +T +V+
Sbjct: 217 NSLKPLALLPEYDDAGNVQSYLHPYE-FELLKFEPPTEQLQKQKPVLPALMAETELMVVD 275
Query: 135 EVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPY 194
V+ LK+ +L+ + A+D+EH+ YR+F+G+TCL+Q+STR++D++ DTL LR +
Sbjct: 276 TVEKLKQALEELRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKDYIFDTLILRDDMH-I 334
Query: 195 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 254
L V DP K K++HGAD DI WLQRD +Y+ NMFDT +A++ L + R SL YLL H+
Sbjct: 335 LNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNMARLSLAYLLKHYL 394
Query: 255 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 314
++ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+Y+ M L E L
Sbjct: 395 DLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYERMTNDLLQQQAEP----GLLGS 450
Query: 315 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 374
VY++S DVC++ Y K + S+L + + +QL + G+ EWRD AR++DES
Sbjct: 451 VYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQLYALRGIFEWRDATARSEDESY 510
Query: 375 GYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
GYVLPN +++IA+ +++ ++ +L ++++ I + + +L I+
Sbjct: 511 GYVLPNHKMVQIAE---SSSREMHGIL-ARYNLIPQLLHTLLPIV 551
>gi|110739343|dbj|BAF01584.1| hypothetical protein [Arabidopsis thaliana]
Length = 377
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 114/171 (66%), Positives = 137/171 (80%)
Query: 276 MLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN 335
M RYAREDTHYLLYIYD+M+++L +M KE E SD+PL EVYKRSYDVC QLYEKEL + +
Sbjct: 1 MKRYAREDTHYLLYIYDVMRMELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRD 60
Query: 336 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 395
SYLH+YG+Q LNA QL++VAGLCEWRD IARADDESTGYVLPN+TL +IAK++P A
Sbjct: 61 SYLHVYGVQTGNLNAVQLSIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMPIVVA 120
Query: 396 KLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASE 446
+LRRLLKSK Y+ER V+S+I+ SMQNAA FE + Q LK+ R E E
Sbjct: 121 QLRRLLKSKLPYLERNFDAVISVIRRSMQNAAAFEPVVQSLKDRRPETVVE 171
>gi|403418903|emb|CCM05603.1| predicted protein [Fibroporia radiculosa]
Length = 751
Score = 248 bits (634), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 155/438 (35%), Positives = 220/438 (50%), Gaps = 55/438 (12%)
Query: 64 TITKPQEEYKIVVNNANQPFQHVWLQKSEDSG---RFIHPLD-NLSVLDFVDKDIGDVEA 119
T+ KP ++K NA P +++ +++ + +HP + + + +
Sbjct: 73 TLWKPTLQHKY---NAQVPLGYIFREENSEGAPALNVLHPYRYEIKHISYPSRMFTQSPP 129
Query: 120 VKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTED 179
+ P S TPF V + + KL+S E AVDLEH+ YR++ G CLMQISTR ED
Sbjct: 130 ISPRSFADTPFTWVNDSAAFTNMLDKLRSAREIAVDLEHHSYRTYSGFVCLMQISTRDED 189
Query: 180 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 239
+VVD L +R ++ L EV DP KV+HGA+ DI+WLQ+DF +Y+ N+FDT AS++L
Sbjct: 190 WVVDALAVRDEME-ALNEVLTDPAIVKVLHGAESDIIWLQQDFNLYIVNLFDTYHASKIL 248
Query: 240 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL- 298
+ R+SL LL +C A+K YQ ADWR+RPLP+EML YAR DTH+LL+IYD ++ L
Sbjct: 249 EFPRHSLATLLEMYCDFTADKRYQLADWRIRPLPEEMLAYARSDTHFLLFIYDNLRNALI 308
Query: 299 ---SSMPKESENSDTPLT----------------EVYKRSYDVCRQLYEKELLSE----- 334
S P S + + EV RS D ++YEKE+
Sbjct: 309 DRAQSRPHSRSQSPSAVVTSPSSHPTNQAHALVREVLSRSEDTALRVYEKEIYDADSGAG 368
Query: 335 -----------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 383
N + + G G A Q + G+ WRD IAR +DEST YVLPN L
Sbjct: 369 PGGWDTLARKWNKGVLMAGAPEGGPYAVQRTIYRGVHAWRDRIAREEDESTRYVLPNHYL 428
Query: 384 IEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEV 443
+A++ P A L LL I R +L I+ ++ + A M V
Sbjct: 429 FVLAERPPADMAALLSLLHPVPPVIRRRSKELLDAIRAAIASVAPVS----------MTV 478
Query: 444 ASEETEVLVLDTSSNLKI 461
A EE + VL + L I
Sbjct: 479 A-EEAKTNVLAAADGLTI 495
>gi|268532256|ref|XP_002631256.1| C. briggsae CBR-CRN-3 protein [Caenorhabditis briggsae]
Length = 868
Score = 248 bits (633), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 135/349 (38%), Positives = 205/349 (58%), Gaps = 14/349 (4%)
Query: 74 IVVNNANQPFQHVWLQKS---EDSGRFIHPLDNLSVLDFVDKDIGDVEAVKPPSLEQTPF 130
IVV + N+ Q W+ S E+ +I + + V +K + V K +L +TP
Sbjct: 215 IVVVDDNESGQRDWISASAETEEEHPYIAEMLHFKV---PEKQLKSVTPQKFKTLTETPL 271
Query: 131 KLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQ 190
+V+ + L+ L KL SV+EF+VDLEH++ R++LGLTCL+QISTR EDF++D + +
Sbjct: 272 TIVDTKEKLESLRDKLNSVEEFSVDLEHHEMRTYLGLTCLIQISTRDEDFIIDPFPMWDR 331
Query: 191 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLL 250
+G L E F +P KV HG+D D++WLQRDFG+++ N+FDT A + LK + SL YL
Sbjct: 332 IG-ILNEPFTNPNILKVFHGSDNDVLWLQRDFGVHVVNLFDTYVAMKKLKYPKFSLAYLA 390
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
F V +K+YQ ADWR RPL + M+ YAREDTHYLLY YD+++ +L +
Sbjct: 391 FRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYSYDMLREQL------LQQGHK 444
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
L VY S D+C ++Y+K + + Y+ + LN +Q + L WRD++ARA+
Sbjct: 445 DLENVYAESNDLCIRVYKKPVFNPKGYMTEIKFRFT-LNNRQDFALTSLYRWRDIVARAE 503
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
DES +VLPN L+ +A+ LP + ++++ G +L I+
Sbjct: 504 DESPQFVLPNHMLLSLAETLPRDVGGIYVCCNPLPYFVKQRTGDILKIM 552
>gi|147776669|emb|CAN74351.1| hypothetical protein VITISV_038575 [Vitis vinifera]
Length = 452
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 189/480 (39%), Positives = 258/480 (53%), Gaps = 76/480 (15%)
Query: 390 LPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET- 448
+P T +KLRRLLKSKH Y+ER +GPV+SII++S+ NAA FE AQ LKE + ASE+
Sbjct: 1 MPVTTSKLRRLLKSKHPYVERNLGPVVSIIRHSILNAAAFEAAAQHLKEGHIGTASEDNT 60
Query: 449 ------EVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAE 502
E L ++ ++++ + ES D + + G + K+ + GS++
Sbjct: 61 VDTTGFEALPSESPTSIRAADARAESFDTDNVINGGKTDKLQTFVSAKEYHMEPGSTIDG 120
Query: 503 LDRNGLGSFAHP-GEAIASENKEATHI-----STLSSSGQSRDLNA--CKSPSPRVTEAA 554
G G + P GE+ ++++ + I T +SSGQSRD + S S +VTE
Sbjct: 121 PGSKGQGGSSEPPGESKEVKDEKDSFIPEVARETPASSGQSRDTDTHTSVSQSEKVTEVT 180
Query: 555 VQALKKPNRGFGALLGNP--KRKFDGEKK-------------------------DKEAMK 587
VQ LKKPNR FG+LLGN KRK + + K KE +K
Sbjct: 181 VQLLKKPNRAFGSLLGNSASKRKLNSDPKVCNSDWVSLAQPVKMQDWVEECPLBGKEDIK 240
Query: 588 LEQIKSSVNLPFHSIFARD-EQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRV 646
LEQIKSSVNLPFHS + E+L +D EE +V
Sbjct: 241 LEQIKSSVNLPFHSFSGGNREELSKLDT--------------------------EEHTKV 274
Query: 647 TVVSQSEEP--APAARPDTEDIITLEDDIDEEEQNLGNLETASAP---GEDGSAGSALEM 701
SEEP PA+R D E+II E++ +E GN A+ ED GS LEM
Sbjct: 275 LETQGSEEPLAVPASRNDLEEIIMFEENSGSDESVNGNSGAANEQLEGKEDNPKGSGLEM 334
Query: 702 GKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGE 761
+ +E MSL+DLS+ FQ+C S N RK + E+S+E +G LQ+KPFD+EAARKQ+ FGE
Sbjct: 335 DEGNEPMSLTDLSSGFQKCSQSLNETRKARRVEKSQESNGLLQVKPFDYEAARKQVRFGE 394
Query: 762 DAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 821
D E+S G +G + V+S KK+ + Q +D T + +QGRRR AFPATGNRS TFR
Sbjct: 395 DP-EESRGKEG-RGGLVDSVSKKRSLGKGRVQGEDETGDYAQGRRRQAFPATGNRSVTFR 452
>gi|452823689|gb|EME30697.1| exosome complex exonuclease RRP6 [Galdieria sulphuraria]
Length = 736
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 147/366 (40%), Positives = 210/366 (57%), Gaps = 21/366 (5%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
LE T V + L+++ KL+ E AVD+E++ YRSF G CL+Q STR EDFVVD
Sbjct: 216 LEDTKCTFVNSLSSLEDMITKLEKEKEIAVDIENHSYRSFQGFICLLQFSTRQEDFVVDA 275
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
++LR + L ++ ++ KV+HGAD D+ WLQRDFG+Y+ +MFDTGQASR LK
Sbjct: 276 IELRGHLK-MLSKILENGNILKVLHGADSDVQWLQRDFGLYIVHMFDTGQASRQLKFPFL 334
Query: 245 SLEYLLHHFCGVN---ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
SL YLL +C ++ K YQ ADWR+RPLP++M YAR+DTHYLLYIYD +L
Sbjct: 335 SLSYLLKRYCNIDNSKTKKYYQLADWRIRPLPEDMFSYARQDTHYLLYIYD----RLCEE 390
Query: 302 PKESENSDTP-LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 360
++S N + LT Y+ S V +YEK ++ Y I + + +Q + LC
Sbjct: 391 LRQSSNCNNNLLTCAYRASIQVSMLIYEKPQMNPLEYQSILSRRKLHFDEKQTLALRTLC 450
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL-KSKHSYIERYMGPVL--- 416
WRD IAR +DES YVLP + +IEIAK++P + ++LR S ++ Y VL
Sbjct: 451 RWRDEIARIEDESLVYVLPEKCMIEIAKRIPQSESELRGCCPYSIPPLLKTYENEVLKLL 510
Query: 417 --SIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDA 474
SI++ S N + E+ + E AS + ++ SNL +P + SV +
Sbjct: 511 QESIMEESEWNKSEQEITMCCTNGQMEEYASTPSHIVGF--QSNL-VPPI---SVSSNSS 564
Query: 475 LVGTTM 480
L G+T+
Sbjct: 565 LFGSTL 570
>gi|195143871|ref|XP_002012920.1| GL23665 [Drosophila persimilis]
gi|194101863|gb|EDW23906.1| GL23665 [Drosophila persimilis]
Length = 903
Score = 246 bits (629), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 128/349 (36%), Positives = 205/349 (58%), Gaps = 21/349 (6%)
Query: 60 FHVPTITKPQEEYKIVVNNANQ-PF------------QHVWLQKSEDSGR---FIHPLD- 102
F I +PQ +K V+N++Q PF L + +++G ++HP +
Sbjct: 190 FAAKNIMRPQMNFKTPVDNSDQNPFVPRLKEKPNSLKPLALLPEYDEAGNVHAYLHPYEF 249
Query: 103 NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYR 162
L L+ + + + P T LV+ V+ L + +L+ A+D+EH+ YR
Sbjct: 250 ELMKLEPSAEQLQRQTPLLPAPPAATELMLVDSVEKLNQALEELRRAPHIAIDVEHHSYR 309
Query: 163 SFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDF 222
+F+G+TCL+Q+STRT+D++ D+L LR ++ L V DP K K++HGAD+DI WLQRD
Sbjct: 310 TFMGITCLVQMSTRTKDYIFDSLALREEMH-VLNLVLTDPKKVKILHGADQDIEWLQRDL 368
Query: 223 GIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARE 282
+Y+ NMFDT +A++ L + R SL +LL H+ ++ +K Q ADWR+RPLP +++ YAR+
Sbjct: 369 SLYVVNMFDTHRAAKALNMARLSLAFLLKHYVDLDVDKSLQLADWRMRPLPQQLIDYARQ 428
Query: 283 DTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYG 342
DTHYL+Y+Y+ M + + + + L VY+ S +VC++ Y K + S+L +
Sbjct: 429 DTHYLIYVYERMT---NDILQAEQGQSQALRTVYQLSMEVCKKRYTKPHIGPESHLDLVR 485
Query: 343 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ +QL + GL +WRD AR +DES GYVLPN +++IA+ LP
Sbjct: 486 KTKRSFDNRQLHALRGLFQWRDATARQEDESYGYVLPNHMMLQIAESLP 534
>gi|328767973|gb|EGF78021.1| hypothetical protein BATDEDRAFT_27210 [Batrachochytrium
dendrobatidis JAM81]
Length = 826
Score = 246 bits (627), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 132/332 (39%), Positives = 188/332 (56%), Gaps = 8/332 (2%)
Query: 124 SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVD 183
SLE TP ++ L+ L + L+ V EFAVDLEH+ +RS+ G TCLMQISTRTEDF+VD
Sbjct: 242 SLESTPLTWIDTPDKLETLCSILEGVTEFAVDLEHHDFRSYQGFTCLMQISTRTEDFLVD 301
Query: 184 TLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLER 243
TL LR + L F +P KV HGA+ DI WLQRDFG+Y+ ++FDT AS L+LE
Sbjct: 302 TLILRNSLHA-LNTSFANPQIVKVFHGAEMDIQWLQRDFGVYVVDLFDTYHASHALELEG 360
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
+SL +LL ++C V +K YQ ADWR+RPLP EM+ YAR DTHYLLYI+D M+ +L + K
Sbjct: 361 HSLAFLLKYYCDVVTDKRYQLADWRIRPLPKEMVHYARMDTHYLLYIFDRMRNEL--LNK 418
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYE-----KELLSENSYLHIYGLQGAGLNAQQLAVVAG 358
+ + + +RS Y+ K+ LS N + + N + LAV
Sbjct: 419 SNPETHNLMHVTLERSGLTSLNTYQKAPYCKDGLSPNGWRSLLNRLKISFNEENLAVFKA 478
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 418
+ EWRD IAR +DES +VLPN L +++ +PT + S + Y + +
Sbjct: 479 IHEWRDRIARKEDESLRFVLPNHMLQTLSRVMPTDGPAVVACCSPTPSLVRLYSKELAHL 538
Query: 419 IKNSMQNAANFEVIAQKLKEERMEVASEETEV 450
I ++ + + + A+ E++
Sbjct: 539 IFQTVNTVRQLTTMKNNAAKNILSQATSESDT 570
>gi|170112858|ref|XP_001887630.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164637532|gb|EDR01817.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 854
Score = 245 bits (626), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 158/442 (35%), Positives = 229/442 (51%), Gaps = 41/442 (9%)
Query: 47 VKVKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLD-NLS 105
VK K + + S P++ PTI+ +K NA P HV+ D HP +S
Sbjct: 167 VKFKRKPDNSDAPWY-PTIS-----HKF---NAKVPLGHVYHDVGSDGVVGNHPYRYEIS 217
Query: 106 VLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFL 165
L + +PPSLE+T + +L+ + AKLK E AVDLEH+ YRS+
Sbjct: 218 HLSYPPYLFKSCTPQQPPSLEETSAIWISTPDELQAMLAKLKKATEIAVDLEHHSYRSYT 277
Query: 166 GLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIY 225
G CLMQIS R D++VD L LR ++ L E+F DP KV+HGA+ D+VWLQ+DF +Y
Sbjct: 278 GFLCLMQISDRENDWIVDLLALRDEIE-QLNEIFTDPKIVKVLHGAESDVVWLQQDFNVY 336
Query: 226 LCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTH 285
+ N+FDT AS++L R+ L LL +C +K YQ ADWR+RPLP EML YAR DTH
Sbjct: 337 IVNLFDTFHASKLLDFPRHGLANLLEMYCDYIPDKRYQLADWRIRPLPQEMLDYARSDTH 396
Query: 286 YLLYIYDIMKIKL---------SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE-- 334
+LL+IYD ++ L S + LT+V RS + ++Y KE
Sbjct: 397 FLLFIYDNLRNALLDRSRSRSSSPSSSSQKPQHALLTQVLTRSAETSLRVYVKEPYDAAD 456
Query: 335 --------------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 380
N + G G G+ A Q V + WR+ +AR +DEST Y +PN
Sbjct: 457 GSGPGGWDTLAKKWNKGALMAGGPGVGIGAMQREVYVRVHGWRERVAREEDESTRYTMPN 516
Query: 381 RTLIEIAKQLPTTAAKLRRLLKSK-HSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEE 439
+ L ++A+Q P A L + KS + + R +L +I+ ++ + +A K++EE
Sbjct: 517 QYLFQLAEQPPADMAALLGVFKSSVPALVRRRAKELLEVIREGVKRGLEGKQVA-KVEEE 575
Query: 440 RMEVASEETEVLVLDTSSNLKI 461
+ S EV+ D +S K+
Sbjct: 576 PSKTGS---EVVAPDAASKEKM 594
>gi|195451328|ref|XP_002072866.1| GK13832 [Drosophila willistoni]
gi|194168951|gb|EDW83852.1| GK13832 [Drosophila willistoni]
Length = 913
Score = 245 bits (625), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 130/351 (37%), Positives = 204/351 (58%), Gaps = 25/351 (7%)
Query: 60 FHVPTITKPQEEYK-IVVNNANQPF------------QHVWLQKSEDSGR---FIHPLDN 103
F I +PQ ++K ++ NNA PF L + ++G ++HP +
Sbjct: 197 FTAKNIMRPQLQFKELIDNNAQNPFLPRLREKPNSLKPLALLPEYNEAGNIQSYLHPYE- 255
Query: 104 LSVLDFVDKDIGDVEAVKP---PSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQ 160
+L F + G ++ P S+ T LV+ ++ L++ +L + A+D+EH+
Sbjct: 256 FELLKF-EPPQGQMQTQSPELPASMGNTELMLVDNLEKLQQAVKELSEASQIAIDVEHHS 314
Query: 161 YRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQR 220
YR+F+G+TCL+Q+ST ++D++ DTL LR + L V DP K K++HGAD DI WLQR
Sbjct: 315 YRTFMGITCLVQMSTCSKDYIFDTLVLREDMQ-LLNLVMTDPKKLKILHGADLDIEWLQR 373
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
D +Y+ NMFDT +A++ L + R SL +LL H+ ++ +K Q ADWR+RPLP E++ YA
Sbjct: 374 DLSLYIVNMFDTHRAAKALNMARLSLAFLLKHYVDLDVDKSLQLADWRMRPLPQELINYA 433
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 340
R+DTHYL+Y+Y + + + K L VY+ S +VCR+ Y K + +S+L +
Sbjct: 434 RQDTHYLIYVYQCLT---NDLLKLDNGHQQILRSVYQMSTEVCRKRYTKPHIGPDSHLDL 490
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ +QL + GL EWRD AR +DES GYV+PN +++IA+ LP
Sbjct: 491 VRKTKQIFDNRQLHALRGLFEWRDTTARQEDESYGYVMPNHMMLQIAESLP 541
>gi|125773943|ref|XP_001358230.1| GA20243 [Drosophila pseudoobscura pseudoobscura]
gi|54637966|gb|EAL27368.1| GA20243 [Drosophila pseudoobscura pseudoobscura]
Length = 905
Score = 245 bits (625), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 127/349 (36%), Positives = 205/349 (58%), Gaps = 21/349 (6%)
Query: 60 FHVPTITKPQEEYKIVVNNANQ-PF------------QHVWLQKSEDSGR---FIHPLD- 102
F I +PQ +K V+N++Q PF L + +++G ++HP +
Sbjct: 190 FAAKNIMRPQMNFKTPVDNSDQNPFVPRLKEKPNSLKPLALLPEYDEAGNVHAYLHPYEF 249
Query: 103 NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYR 162
L L+ + + + P T LV+ V+ L + +L+ A+D+EH+ YR
Sbjct: 250 ELMKLEPSAEQLQRQTPLLPAPPAATELMLVDSVEKLNQALEELRRAPHIAIDVEHHSYR 309
Query: 163 SFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDF 222
+F+G+TCL+Q+STRT+D++ D+L LR ++ L V DP K K++HGAD+DI WLQRD
Sbjct: 310 TFMGITCLVQMSTRTKDYIFDSLALREEMH-VLNLVLTDPKKVKILHGADQDIEWLQRDL 368
Query: 223 GIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARE 282
+Y+ NMFDT +A++ L + R SL +LL H+ ++ +K Q ADWR+RPLP +++ YAR+
Sbjct: 369 SLYVVNMFDTHRAAKALNMARLSLAFLLKHYVDLDVDKSLQLADWRMRPLPQQLIDYARQ 428
Query: 283 DTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYG 342
DTHYL+Y+Y+ M + + + + L VY+ S +VC++ Y K + S+L +
Sbjct: 429 DTHYLIYVYERMT---NDLLQAEQGQSQALRTVYQLSTEVCKKRYTKPHVGPESHLDLVR 485
Query: 343 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ +QL + G+ +WRD AR +DES GYVLPN +++IA+ LP
Sbjct: 486 KTKRSFDNRQLHALRGIFQWRDATARQEDESYGYVLPNHMMLQIAESLP 534
>gi|392566464|gb|EIW59640.1| hypothetical protein TRAVEDRAFT_147720 [Trametes versicolor
FP-101664 SS1]
Length = 850
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 158/462 (34%), Positives = 226/462 (48%), Gaps = 63/462 (13%)
Query: 61 HVPTITKPQEEYKIVVNNANQPFQHVWLQK------------SEDS-------GRFIHPL 101
H + KPQ +K V+N N H L+ EDS +HP
Sbjct: 155 HASHLPKPQLSFKRKVDNTNGVPWHPTLRHKYNAKVPLGYNLQEDSEGVEEGPSSSLHPY 214
Query: 102 DN-LSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQ 160
+ + + + + + P S E TPF V + + +++ E AVDLE++
Sbjct: 215 RHEIKHISYPTRMFTPAPPIVPRSFEDTPFTWVSTSAEFAVMLEQMRGAREIAVDLEYHS 274
Query: 161 YRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQR 220
YR+F G CLMQISTR DFVVDT+ LR ++ L EVF DP KV HGA+ DIVWLQ+
Sbjct: 275 YRTFAGFVCLMQISTREADFVVDTIALRDEME-ELNEVFTDPDVVKVFHGAESDIVWLQQ 333
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
DF +Y+ N+FDT AS+VL R+ L LL +C A+K YQ ADWR+RPLP+EML+YA
Sbjct: 334 DFNLYVVNLFDTYHASKVLDFPRHGLATLLEMYCDFTADKRYQLADWRIRPLPEEMLQYA 393
Query: 281 REDTHYLLYIYDIMKIKL-----------SSMPKESENSDTP----------LTEVYKRS 319
R DTH+LL+IYD ++ L + P S + TP + EV RS
Sbjct: 394 RSDTHFLLFIYDNLRNALLDRAQSRAQSRAQSPSSSAATPTPESSYPPAHALVREVLSRS 453
Query: 320 YDVCRQLYEKELLSENSYLHIYGL-------------------QGAGLNAQQLAVVAGLC 360
+ + YEKEL ++ G +GA Q AV +
Sbjct: 454 EETALREYEKELYDTDTGAGPGGWDTLARKWNKASLMAVSSDREGATAVNVQRAVYRTVH 513
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK 420
WRD IAR +DEST YVLPN L +A++ P A L + I R +L I+
Sbjct: 514 GWRDRIAREEDESTRYVLPNHYLFSLAERTPADMAALLSVFHPVPPVIRRRAKELLDAIR 573
Query: 421 NSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIP 462
++++ A A+ + A++E +L+ + +S ++P
Sbjct: 574 DTVKGA--LGPTAETPRAPAGPSAAQEVAMLIDEEASAAEMP 613
>gi|194743298|ref|XP_001954137.1| GF18126 [Drosophila ananassae]
gi|190627174|gb|EDV42698.1| GF18126 [Drosophila ananassae]
Length = 909
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 207/351 (58%), Gaps = 26/351 (7%)
Query: 60 FHVPTITKPQEEYKIVVNN-ANQPF------------QHVWLQKSEDSGR---FIHPLDN 103
F I +PQ +K V+N A PF L + +DSG ++HP +
Sbjct: 196 FTAKNIVRPQMLFKEPVDNSALNPFVPRLKEKPNSLKPLALLPEYDDSGNIQAYLHPYE- 254
Query: 104 LSVLDFVDKDIGDVEAVKP--PSL-EQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQ 160
++ F + + ++ KP P+L T LV+ V+ LK+ +L+ + A+D+EH+
Sbjct: 255 FELMKF-EPPVQQLQKQKPILPNLMSDTELMLVDSVEKLKQALEELRQAPQIAIDVEHHS 313
Query: 161 YRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQR 220
YR+F+G+TCL+Q+STR++D++ DTL LR ++ L V DP K K++HGAD DI WLQR
Sbjct: 314 YRTFMGITCLVQMSTRSKDYIFDTLILRDEMH-ILNLVLTDPKKLKILHGADLDIEWLQR 372
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
D +Y+ NMFDT +A++ L L R SL +LL H+ ++ +K Q ADWR+RPLP +++ YA
Sbjct: 373 DLSLYIVNMFDTHRAAKALNLARLSLAFLLKHYIDLDVDKSLQLADWRMRPLPQQLVDYA 432
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 340
R+DTH+L+Y+Y+ M L E + L VY S +VC++ Y K + S+L +
Sbjct: 433 RQDTHFLIYVYERMTNDLL----EQQVETGLLNNVYMMSTEVCKKRYNKPHVGPESHLDL 488
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ +QL + G+ EWRD AR +DES GYVLPN +++IA+ LP
Sbjct: 489 VRKTKRNFDNRQLYALRGIFEWRDATARLEDESYGYVLPNHMMLQIAESLP 539
>gi|391347098|ref|XP_003747802.1| PREDICTED: exosome component 10-like [Metaseiulus occidentalis]
Length = 867
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/362 (37%), Positives = 207/362 (57%), Gaps = 28/362 (7%)
Query: 52 RKEKSKVPFHVPTITKPQEEYKIVVNNANQPF-------------QHVWLQKSEDSGRFI 98
++E S +T+PQ + ++N+N PF + ++ + +
Sbjct: 153 KRESSVTLLTAANVTRPQLSFPDKIDNSNSPFVPIIKDKPNALKPLAILVETIDGEETYS 212
Query: 99 HP----LDNLSVLD-----FVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSV 149
HP ++ S D F+ + KP L +TP +LV LK++ +LK
Sbjct: 213 HPYEFEIEKFSPTDEQMHSFIPSIFMFPQETKP--LGETPLELVSTPGALKKVLEELKQH 270
Query: 150 DEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMH 209
+ A+DLEH+ +RSF+G TCL+Q+ST +D+++D L+LR + L EV DP KV+H
Sbjct: 271 RQIAIDLEHHSFRSFMGFTCLVQVSTWDKDYIIDPLELRGHLH-VLNEVTTDPKIVKVLH 329
Query: 210 GADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRV 269
G+ D+ WLQRDFG+Y+ N+FDTG A+++L ER SL YLL F V ++K +Q DWR+
Sbjct: 330 GSHSDVQWLQRDFGVYIVNLFDTGIAAKLLNYERLSLSYLLKKFEQVESDKRFQLVDWRI 389
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
RPLP EM+ YAR DTHYLL I + +K +L++ E+ N + V++RS +C + YEK
Sbjct: 390 RPLPKEMIEYARTDTHYLLSICEKLKEELNNASNEAGNL---MKAVWQRSSLLCLKRYEK 446
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
+L+E S+ ++ N +QL + + WRD +AR DESTGYVLPN L+ I +
Sbjct: 447 PILTEESHRNLLKTANKRFNDKQLYALKHIFAWRDRLARELDESTGYVLPNHMLLNICEL 506
Query: 390 LP 391
LP
Sbjct: 507 LP 508
>gi|401428763|ref|XP_003878864.1| putative exosome subunit rrp6p homologue [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495113|emb|CBZ30417.1| putative exosome subunit rrp6p homologue [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 743
Score = 242 bits (618), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 154/432 (35%), Positives = 228/432 (52%), Gaps = 26/432 (6%)
Query: 1 MDVSFDEFSKARGENGEGDGNEGGFQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPF 60
+D DE R + E G +L +N++ G +V +A A V
Sbjct: 110 VDSLLDEVKGRRLDAQEQLSVTFGSELEVSQNREGGVVVAEAASARAGV----------L 159
Query: 61 HVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFI------HPLDN-LSVLDFVDKD 113
+ I +PQ + V+N+ PF + + SG++ HP ++ + +
Sbjct: 160 RLAHIRRPQLLFGTPVDNSAAPFVPRYY---DASGQYHVGVAGQHPFESVIKTFSVPESQ 216
Query: 114 IGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQI 173
+ V P L+ P V+ ++ + AKL E AVDLEH+ + S+ G TCLMQI
Sbjct: 217 MLPRAEVPPVPLDACPLTFVDTTAAMQAMVAKLLLSSEIAVDLEHHDFYSYQGFTCLMQI 276
Query: 174 STRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG 233
STR EDF+VD LKLR +G L VF +P+ KV HGA DI WLQ+DF +Y+ N FDTG
Sbjct: 277 STREEDFIVDCLKLRSSMGA-LAPVFLNPSILKVFHGAREDIRWLQKDFSLYVVNFFDTG 335
Query: 234 QASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDI 293
A + L + SL + + HFC V NK+YQ ADWRVRPL EM+ YAR+DTH+LLY++D
Sbjct: 336 VALQTLHMP-YSLAFAVDHFCQVKLNKKYQTADWRVRPLSAEMVHYARQDTHFLLYVHDR 394
Query: 294 MK-IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQ 351
+K + L+S + S S L VY S + Q+YEK ++ E +Y G +GLN
Sbjct: 395 LKALLLNSEGRASIGS--LLVHVYNESKQLSLQIYEKPNVVPEETYKIALGRSLSGLNKV 452
Query: 352 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 411
Q V + WRD AR D+S VL +++ IA +LPTTA +L R + +
Sbjct: 453 QEKVACDVFNWRDSAAREVDDSPMAVLHLSSVLSIASKLPTTAKELLRCCAPATAVVRDN 512
Query: 412 MGPVLSIIKNSM 423
+ ++ ++K+++
Sbjct: 513 VALLVDLVKDAV 524
>gi|242218119|ref|XP_002474853.1| predicted protein [Postia placenta Mad-698-R]
gi|220725980|gb|EED79945.1| predicted protein [Postia placenta Mad-698-R]
Length = 882
Score = 242 bits (617), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 151/416 (36%), Positives = 207/416 (49%), Gaps = 66/416 (15%)
Query: 64 TITKPQEEYKIVVNNANQPFQHVWLQKSEDSG----RFIHPLD-NLSVLDFVDKDIGDVE 118
TI +P ++K NA P H + D G +HP + + + D+
Sbjct: 179 TIWQPTLQHKF---NAQVPLGHNLRDEDSDEGLPGPSALHPYRYEIKHITYPDRMFASAP 235
Query: 119 AVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTE 178
+ P S +TPF V + + KL+S E A+DLE++ YR+F G CLMQ+STR E
Sbjct: 236 PMSPRSFAETPFTWVADSTAFSAMLNKLRSAQEIAIDLEYHSYRTFGGFVCLMQLSTREE 295
Query: 179 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 238
D+VVDTL +R ++ L EVF D KV+HGA+ DIVWLQ+DF +Y+ N+FDT AS+V
Sbjct: 296 DWVVDTLAVRDEMEA-LNEVFTDSQIVKVLHGAESDIVWLQQDFNLYIVNLFDTYHASKV 354
Query: 239 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298
L R+SL LL +C A+K YQ ADWR+RPLP+EML YAR DTH+LLYIYD ++ L
Sbjct: 355 LDFPRHSLATLLEMYCDFTADKRYQLADWRIRPLPEEMLAYARSDTHFLLYIYDNLRNAL 414
Query: 299 -------------------------SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS 333
S +P + + + V RS + ++YEKE
Sbjct: 415 LDRAQSRTQSRAQSPSASAPASKPGSPLPTSGNPAHSLVRLVLSRSEETALRVYEKETYD 474
Query: 334 E---------------NSYLHIYGLQ--GAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
N I Q +G A Q AV + WRD IAR +DEST Y
Sbjct: 475 AEGSGPGGWDTLARKWNKGALIASAQEPTSGPLAMQRAVYRCVHAWRDRIAREEDESTRY 534
Query: 377 VLPNRTLIEIAKQLPTTAAKL---------------RRLLKSKHSYIERYMGPVLS 417
+LPN L +A++ P A L R LL + ++R +GP LS
Sbjct: 535 ILPNHYLFILAERPPADMAALLSTFQPVPPVVRRRGRELLDAIRDAVKRTLGPELS 590
>gi|395329712|gb|EJF62098.1| hypothetical protein DICSQDRAFT_59413 [Dichomitus squalens LYAD-421
SS1]
Length = 861
Score = 242 bits (617), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 162/457 (35%), Positives = 223/457 (48%), Gaps = 67/457 (14%)
Query: 61 HVPTITKPQEEYKIVVNN---------------ANQPFQHVWLQKSEDSGRFIHPLD-NL 104
H + KPQ +K VNN A P + ++ E+ +HP +
Sbjct: 151 HASYLAKPQLSFKRKVNNNRHTAWTPTLKHKYNAQVPLGYNLGEEGEEPSTSLHPYRYEI 210
Query: 105 SVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSF 164
+ + + + P S E+TPF V +D + KL+ E A+DLE++ YR+F
Sbjct: 211 RHIAYPSRMFTSAPPISPRSFEETPFSWVSTPEDFATMLDKLRPASEIAIDLEYHNYRTF 270
Query: 165 LGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGI 224
G CLMQISTR EDFVVDTL LR ++ L EVF DP KV+HGA+ DIVWLQ+DF +
Sbjct: 271 SGFVCLMQISTRDEDFVVDTLALREELE-ELNEVFTDPNIVKVLHGAESDIVWLQQDFNL 329
Query: 225 YLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 284
Y+ N+FDT AS+VL R+ L LL +C A+K YQ ADWR+RPLP EML+YAR DT
Sbjct: 330 YIVNLFDTYHASKVLDFPRHGLASLLEMYCDFTADKRYQLADWRIRPLPKEMLQYARSDT 389
Query: 285 HYLLYIYDIMKIKLSSMPKESENS---------------------DTPLTEVYKRSYDVC 323
H+LL+IYD ++ L + S + EV RS +
Sbjct: 390 HFLLFIYDNLRNALLDRAQSRAQSRAQSPSSPTSTPPPDPSIPPAHVLVREVLSRSEETA 449
Query: 324 RQLYEKELLSE----------------NSYLHIYGL----QGAGLNAQQLAVVAGLCEWR 363
++YEKE+ N L I + GA +N Q+ AV + WR
Sbjct: 450 LRVYEKEIYDAEFGLGPGGWDTMARKWNKTLLIGSMAETNTGAAVNVQR-AVYRAVHAWR 508
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 423
D IAR +DEST YVLPN + +A++ P A L + S I R +L I++++
Sbjct: 509 DKIAREEDESTRYVLPNHYIFSLAERTPADMAALLSVFHPVPSVIRRRAKELLDAIRDAV 568
Query: 424 QNAA--------NFEVIAQKLKEERMEVASEETEVLV 452
+ A EV A EE M V T V+
Sbjct: 569 KGALGSGSTTERGAEVTASVEGEEIMSVDDPLTTVVT 605
>gi|426195548|gb|EKV45477.1| hypothetical protein AGABI2DRAFT_186278 [Agaricus bisporus var.
bisporus H97]
Length = 870
Score = 241 bits (616), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 144/413 (34%), Positives = 211/413 (51%), Gaps = 50/413 (12%)
Query: 61 HVPTITKPQEEYKIVVNNANQPFQ--------------HVWLQKSEDSGRFI-HPLD-NL 104
H + KPQ +K +N + P+ HV+ +D+ HP +
Sbjct: 177 HASQLPKPQLSFKYKADNDDAPWYPSLTHKYNALVPLGHVYTDADDDTTVIANHPYRYEI 236
Query: 105 SVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSF 164
+ + + P SL +TP+ + L+ + KL++ E AVDLEH+ YR++
Sbjct: 237 NHITYPSHVYAPANPSPPASLAETPYSWISNPDGLQNMLTKLRAASEIAVDLEHHSYRTY 296
Query: 165 LGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGI 224
LG CLMQISTR EDFVVD + LR ++ L EVF DP KV HGA+ DIVWLQ+DF +
Sbjct: 297 LGFLCLMQISTREEDFVVDVIALRDEM-EVLNEVFTDPKIVKVFHGAESDIVWLQQDFNL 355
Query: 225 YLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 284
Y+ N+FDT AS++L+ R+ L LL +C +K YQ ADWR+RPLP EML YAR DT
Sbjct: 356 YVVNLFDTYHASKLLEFPRHGLANLLEMYCDYIPDKRYQLADWRIRPLPKEMLEYARSDT 415
Query: 285 HYLLYIYDIMKIKL-------SSMPKESENS-DTPLTEVYKRSYDVCRQLYEKELLSENS 336
H+LL+IYD ++ L S P S+N + V RS + C ++Y KE+ +S
Sbjct: 416 HFLLFIYDNLRNALLDRGGPASRSPHASKNPLHASINHVLTRSSETCLRVYVKEVYDRSS 475
Query: 337 YLHIYGL------------------------QGAGLNAQQLAVVAGLCEWRDVIARADDE 372
G +G + Q AV + WR+ ++R +DE
Sbjct: 476 GTGSNGWDTLARKWNKPLFTALSFSYQSSSDEGHSVPEMQKAVYRAVHWWRESVSREEDE 535
Query: 373 STGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK-HSYIERYMGPVLSIIKNSMQ 424
ST YVLPN+ L IA+ P L RL S ++R +L +++++++
Sbjct: 536 STRYVLPNQYLFRIAEAPPGDLGNLLRLFGSSVPVVVKRRAKELLDVVRDAVK 588
>gi|336369802|gb|EGN98143.1| hypothetical protein SERLA73DRAFT_91376 [Serpula lacrymans var.
lacrymans S7.3]
gi|336382569|gb|EGO23719.1| hypothetical protein SERLADRAFT_450051 [Serpula lacrymans var.
lacrymans S7.9]
Length = 879
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 151/459 (32%), Positives = 228/459 (49%), Gaps = 54/459 (11%)
Query: 61 HVPTITKPQEEYKIVVNN---------------ANQPFQHVWLQKSEDSGRF---IHPLD 102
H + KPQ +K V+N A P +++ ED+ +HP
Sbjct: 156 HASHLPKPQLSFKTKVDNTVDSPWHPTLRHKYNAQVPLGYIYRDSEEDADSTKLNLHPYQ 215
Query: 103 NLSVLDFVDKDIGDVEAVKPPS-LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQY 161
+ + + +PP LE+TP V D + KL+ E AVDLEH+ Y
Sbjct: 216 YEIKHTPYPPSMFQIRSPQPPKILEETPLSWVSTSADFSAMLEKLRQATELAVDLEHHSY 275
Query: 162 RSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRD 221
R+F G CLMQISTR EDF+VDTL LR ++ L EVF DP KV HGA+ DIVWLQ+D
Sbjct: 276 RTFSGFLCLMQISTRDEDFIVDTLALREELSE-LNEVFTDPRIVKVFHGAESDIVWLQQD 334
Query: 222 FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAR 281
F +Y+ N+FDT AS+ + ++ L LL +C +K+YQ ADWR+RPLPDEML YAR
Sbjct: 335 FNLYIVNLFDTFHASKAIGFPKHGLASLLEMYCDFTPDKQYQLADWRMRPLPDEMLAYAR 394
Query: 282 EDTHYLLYIYDIMKIKLSSMPK------ESENSDTP--------LTEVYKRSYDVCRQLY 327
DTHYLL+IYD ++ L + + ++E+S P + +V RS + ++Y
Sbjct: 395 SDTHYLLFIYDNLRNALIDLAQSRAQSSQNESSSGPAADPAHALIRQVLFRSEETALRVY 454
Query: 328 EKELLSENSYLHIYGLQGAGLNAQQLAVVA------------GLCEWRDVIARADDESTG 375
E+EL G G + ++A + WRD ++R +DEST
Sbjct: 455 ERELYDAEDGSGPGGWDGLARKWNKGTLMASARGSVRQEVYRSVHAWRDRVSREEDESTR 514
Query: 376 YVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ--NAANFEVIA 433
YVLPN L ++A+Q P+ L + I R +L +++++ +N +I
Sbjct: 515 YVLPNHYLFQLAEQPPSDMPALLAFFQHVPPVIRRRAKELLDSVRDAVARYGGSNATLI- 573
Query: 434 QKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGV 472
E+ E + + ++ D S + +G+ +V+
Sbjct: 574 -----EKTESITISEDTVITDLPSPNIVDQIGKPAVEAA 607
>gi|189237006|ref|XP_966807.2| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
Length = 947
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/345 (38%), Positives = 199/345 (57%), Gaps = 22/345 (6%)
Query: 65 ITKPQEEYKIVVNNANQ-PFQ-------------HVWLQKSEDSGRFIHPLD-NLSVLDF 109
I +PQ+ +K ++N N+ P+ ++L++ ED + HP + L
Sbjct: 176 IIRPQKFFKDQIDNRNKTPWSPRITEKPNSLKPLAIFLEEYEDRQEYSHPYEFELDRFQP 235
Query: 110 VDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTC 169
+ D ++V P SL TP +++ + L EL L+ EF+VD+EH+ YRSF+G+TC
Sbjct: 236 TPSQLIDEKSVPPKSLSDTPLIEIDKAEQLDELVETLRHCKEFSVDVEHHSYRSFMGITC 295
Query: 170 LMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 229
L+QIST +D+++D L LR ++ L EVF T K+ HGAD+DI WLQRD +Y+ NM
Sbjct: 296 LIQISTEDKDYLIDALALRDKLS-ILNEVFTKNTIVKIFHGADKDIEWLQRDLSLYVVNM 354
Query: 230 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 289
FDT QA++ L+ SL +L+ FC V NK++Q ADWR+RPLPDE+ YAREDTHYL+Y
Sbjct: 355 FDTHQAAKALQYPALSLAFLMKKFCNVTPNKQFQLADWRIRPLPDELKSYAREDTHYLIY 414
Query: 290 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 349
IY +MK +L ++ D L V +RS +VC++ Y K +L E+S+L +Y +
Sbjct: 415 IYKMMKRELLH---KTNKCDKLLRSVIERSTEVCKKRYFKPILHEDSHLELYRKCKKMFD 471
Query: 350 AQQLAVV---AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+Q+ + S YVLPN L++I++ LP
Sbjct: 472 NRQMYALKEXXXXXXXXXXXXXXXXXSCSYVLPNHMLLQISELLP 516
>gi|405119146|gb|AFR93919.1| PM-scl autoantigen [Cryptococcus neoformans var. grubii H99]
Length = 954
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/329 (41%), Positives = 184/329 (55%), Gaps = 27/329 (8%)
Query: 116 DVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIST 175
D + V P S +TPF+ V+ + L + KLK E AVDLEH+ RS+ G TCL+QIST
Sbjct: 233 DSKPVPPQSFNETPFEFVDTPEKLHRMVEKLKEAKEIAVDLEHHDMRSYAGFTCLIQIST 292
Query: 176 RTEDFVVDTLKLRVQVGP-YLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
R D+VVDTL LR ++ +VF DPT KV HGAD DI+WLQRDF I++ N+FDT
Sbjct: 293 RESDWVVDTLALRKEIQQDKFGDVFTDPTIVKVFHGADSDIIWLQRDFEIFVVNLFDTYS 352
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
A VL++ + SL LL H+C A+K YQ ADWR+RPLPD ML YAR DTH+LL+IYD +
Sbjct: 353 ACVVLEMPQRSLSALLQHYCSFEADKRYQRADWRIRPLPDGMLYYARSDTHFLLFIYDNL 412
Query: 295 KIKL---SSMPKESENSDT------------PLTEVYKRSYDVCRQLYEKELLSENSYLH 339
+ L SS P T + EV +RS D ++YE++ +
Sbjct: 413 RNALLHKSSRPSSPATCGTIVLDSARPNPQEAMREVLERSADTALKMYERDSYDIETGRG 472
Query: 340 IYGLQGAG--------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
G AG + + V L +WRD +AR DES YV+PN L +++
Sbjct: 473 SGGWLAAGKKWLPKGEIEQESGWVWRHLHDWRDRVAREMDESPFYVMPNNMLRDVSTA-- 530
Query: 392 TTAAKLRRLLKSKHSYI-ERYMGPVLSII 419
A L R+++ + I +Y+ + SII
Sbjct: 531 DNTANLSRIIRRDRAPIAAQYIPEITSII 559
>gi|58265702|ref|XP_570007.1| PM-scl autoantigen [Cryptococcus neoformans var. neoformans JEC21]
gi|57226239|gb|AAW42700.1| PM-scl autoantigen, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1016
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 137/334 (41%), Positives = 187/334 (55%), Gaps = 37/334 (11%)
Query: 116 DVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIST 175
D + V P S ++TPF+ V+ + L + KLK E AVDLEH+ RS+ G TCL+QIST
Sbjct: 295 DSKPVPPQSFDETPFEFVDTPEKLHRMVEKLKQAKEIAVDLEHHDMRSYAGFTCLIQIST 354
Query: 176 RTEDFVVDTLKLRVQVGP-YLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
R D+VVDTL LR ++ +VF DPT KV HGAD DI+WLQRDF I++ N+FDT
Sbjct: 355 RESDWVVDTLALRKEIQQDKFGDVFTDPTIVKVFHGADSDIIWLQRDFEIFVVNLFDTYS 414
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
A VL++ + SL LL H+C A+K YQ ADWR+RPLPD ML YAR DTH+LL+IYD +
Sbjct: 415 ACVVLEMPQRSLSALLQHYCNFEADKRYQRADWRIRPLPDGMLYYARSDTHFLLFIYDNL 474
Query: 295 KIKL---SSMPKESENSDT------------PLTEVYKRSYDVCRQLYEKELLSENSYLH 339
+ L SS P N T + EV +S D ++YE+ +SY
Sbjct: 475 RNALLHKSSRPSSPANCGTIVLDSARPNPQEAMREVLGKSADTALKMYER-----DSYDI 529
Query: 340 IYGLQGAGLNA-------------QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
+ G G A + V L +WRD +AR DES Y++PN L ++
Sbjct: 530 VTGRGSGGWLAAGKKWLPKGEIEQESGWVWRHLHDWRDRVAREMDESPFYIMPNNMLRDV 589
Query: 387 AKQLPTTAAKLRRLLKSKHSYI-ERYMGPVLSII 419
+ T A L R+++ + I +Y+ + SII
Sbjct: 590 STADNT--ANLSRIIRRDRAPIAAQYIPEITSII 621
>gi|449304144|gb|EMD00152.1| hypothetical protein BAUCODRAFT_366269 [Baudoinia compniacensis
UAMH 10762]
Length = 774
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 139/369 (37%), Positives = 207/369 (56%), Gaps = 26/369 (7%)
Query: 50 KDRKEKSKVPFHVPTITKPQEEYKIV-VNNANQPFQHVW------LQKSEDSGRFIHPLD 102
K + E++K+ + I KPQ ++ V NN PF + ++ E+S +HP
Sbjct: 119 KRQDERTKLDWRKSDIEKPQLLFENVPTNNETGPFLPLLQSKPHAMRPKEESAPGLHPYQ 178
Query: 103 NLSVLDFVDKDIGDVEAVKPPSLEQTPFK-----LVEEVKDLKELAAKLKSVDEFAVDLE 157
+ +LD+ + ++ PS+ TPF+ V+ + E+ +LK E AVDLE
Sbjct: 179 S-EILDY--RWPAELYTTAEPSM-YTPFEESTATFVDTEDAMYEMLEELKQAKEIAVDLE 234
Query: 158 HNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVW 217
H+ RS++G+ CLMQISTR +D++VDTLK + L EVF +P+ KV+HGA D++W
Sbjct: 235 HHDLRSYVGIVCLMQISTRNKDWIVDTLKPWRRKLSCLNEVFANPSILKVLHGAYMDVIW 294
Query: 218 LQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEML 277
LQRD G+YL +FDT A R L SL +LL F V+A K+YQ ADWR+RPLP E+L
Sbjct: 295 LQRDLGLYLVGLFDTHYACRALGYAGASLAFLLKKFANVDAQKQYQTADWRIRPLPQELL 354
Query: 278 RYAREDTHYLLYIYDIMK---IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE 334
YAR DTHYLLYI+D M+ ++ S+ K D L +V ++S + Q YE +
Sbjct: 355 DYARSDTHYLLYIFDNMRNELVQRSTFGKMDHEGDK-LWDVLQKSSETALQRYEHPVYDF 413
Query: 335 N------SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 388
+ + + A L+ +Q +V + WRD +AR D+S Y++ N + IAK
Sbjct: 414 DLGQGTVGWYKLLARTSATLSKEQFSVFRAVHRWRDNVAREQDDSAHYIMSNHHIFSIAK 473
Query: 389 QLPTTAAKL 397
+PTT A+L
Sbjct: 474 SMPTTKAEL 482
>gi|213408214|ref|XP_002174878.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus
yFS275]
gi|212002925|gb|EEB08585.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus
yFS275]
Length = 782
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 161/455 (35%), Positives = 234/455 (51%), Gaps = 62/455 (13%)
Query: 32 NKKKGDIVG---GSAPASVKVKDRKEKSKVPF---HVPTITKPQEEYKIVVNN-ANQPFQ 84
+K KG + AP + + +K K+P+ H I KPQ +K VNN P
Sbjct: 94 DKAKGIVTKPKVAVAPVNNAQSSQPKKEKLPYRLIHAFNIPKPQLRFKHPVNNHPTTP-- 151
Query: 85 HVWLQKSEDSGRFIHPLDNLSVLDFVDKDIGDVEAVKPP--------------------- 123
WL K + + PL+ L LD V D ++ P
Sbjct: 152 --WLWKLTEKPNALVPLEKL--LDQVRADKALQLSLPHPYEAEIKNSSRPKQLYETKNPV 207
Query: 124 ---SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDF 180
++E+T V+ + L + +LK E AVDLEH+ YRS+ G CLMQISTR +D+
Sbjct: 208 QKGAVEETDPIWVDNSESLHSMLEELKQATEIAVDLEHHDYRSYSGFVCLMQISTRNQDW 267
Query: 181 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 240
+VDTL+LR ++ L VF DP KV+HGA D++WLQRDFG+YL +FDT A++ L
Sbjct: 268 IVDTLELREELE-CLNIVFTDPKIIKVLHGATMDVIWLQRDFGLYLVGLFDTYYATKALG 326
Query: 241 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300
E + L +LL +C A+K YQ ADWR+RPLP EML+YA+ DTH+LLY++D ++++L
Sbjct: 327 FEGHGLAFLLKKYCQFEADKRYQMADWRIRPLPKEMLKYAQSDTHFLLYVFDCLRVEL-- 384
Query: 301 MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG------------- 347
+ + S + + V K S DV + YE+E +Y IYGL G
Sbjct: 385 LEQSSRRKEDLMQYVVKSSDDVALRRYERE-----AYDEIYGLGTDGWRHVLTKWGSSKI 439
Query: 348 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 407
+ + LAV L WRD +AR +DES YV+PN L+++A +P+ + L +
Sbjct: 440 IGREALAVFKSLHRWRDQVARNEDESVRYVMPNHLLVKLAASMPSDPSDLYTSARQLPPL 499
Query: 408 IERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 442
+ Y ++ +I QNA EV E+R E
Sbjct: 500 VRMYANEIIEVI----QNAREDEVKRATTDEQRTE 530
>gi|324501716|gb|ADY40761.1| Exosome component 10 [Ascaris suum]
Length = 892
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 150/412 (36%), Positives = 216/412 (52%), Gaps = 51/412 (12%)
Query: 15 NGEGDGNEGGFQLVYGKNKKKGDIVGGS-APASVKVKDRKEKSKVPFHVPTITKPQEEYK 73
+G G ++G + ++ + G+ S P + V K + KPQ Y
Sbjct: 138 SGSGQASQGRYAVLLSRFNSAGETNSASNTPHRITVNSASSK--------VLVKPQVAYG 189
Query: 74 IVVNN---------------ANQPFQHVWLQK---------SEDSGRFIHPLDNLSVLDF 109
I V+N ++P + + ++ S D HP L + F
Sbjct: 190 IPVDNTEADFVPRLKEKHNAVSEPIRSLHIRDEDCDNDSAWSSDQQESAHPY-QLELETF 248
Query: 110 ----VDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFL 165
++G+V ++P ++ T +V++ + LK L +L SV +FAVDLEH+ YRSFL
Sbjct: 249 KVPPSQLELGNVRQLRP--IKDTELVMVDDAEKLKMLRDELNSVSKFAVDLEHHSYRSFL 306
Query: 166 GLTCLMQISTRTEDFVVDTLKLR--VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFG 223
GLTCLMQIST +D+++D + +Q+ L E F +P KV HG++ D+ WLQRDFG
Sbjct: 307 GLTCLMQISTDEKDYIIDPFPIWNDMQI---LNEPFTNPNILKVFHGSEYDVQWLQRDFG 363
Query: 224 IYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARED 283
IY+ MFDT A VL + SL +L+ C V +KE Q ADWRVRPL + YAR D
Sbjct: 364 IYVVGMFDTFCAMHVLNFAKYSLAHLVQSICNVTLDKELQKADWRVRPLTTAHIEYARSD 423
Query: 284 THYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGL 343
THYLLY YD ++ +L + ES N L Y S +CR +Y+K Y + L
Sbjct: 424 THYLLYCYDTLRQRLINEGNESNNL---LRSTYNESALICRTVYKKPKFESEGYETL--L 478
Query: 344 QG-AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 394
+G LN++QL + L +WRD ARA+DES YVLPN L++IA+ LP A
Sbjct: 479 RGRKSLNSRQLYALKALWKWRDDRARAEDESLEYVLPNHMLLQIAEVLPREA 530
>gi|256073603|ref|XP_002573119.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
gi|353232486|emb|CCD79841.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
Length = 830
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 197/337 (58%), Gaps = 15/337 (4%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++ V+ + L+++ L AVDLEH+ YRSFLG+TCL+Q+ST D+++D L LR
Sbjct: 214 YQYVDTLDTLEQIMKSLSMCKYIAVDLEHHSYRSFLGITCLIQMSTLGSDYIIDALALRD 273
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
+ L EVF DP KV HG+D D++WLQRDFG+Y+ N+FDTG A+R+L+ R SL YL
Sbjct: 274 HLS-ILNEVFTDPKIVKVFHGSDSDLMWLQRDFGVYVVNLFDTGIAARLLQYGRFSLSYL 332
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
L F G+ ANK+YQ ADWR+RPLP+E++ YAR DTHYLL+I S M +E ++ D
Sbjct: 333 LQRFVGIYANKKYQLADWRIRPLPNELIEYARSDTHYLLHI-------ASRMCRELQDRD 385
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG-AGLNAQQLAVVAGLCEWRDVIAR 368
L+ +R+ +C + Y K + + YL +Y G + + +QL + L RD IAR
Sbjct: 386 L-LSVAIERARQLCLRCYTKPVFNRLGYLDLYRQTGSSSFSHRQLYALENLYALRDSIAR 444
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 428
+DES YVLPN L IA+ LP ++ + + +Y+ + II +A N
Sbjct: 445 REDESLHYVLPNHMLKVIAEVLPRESSGIFACCNPIPPLVRKYVHDLHKIIV----DARN 500
Query: 429 FEVIAQKLKEERMEVASE-ETEVLVLDTSSNLKIPNV 464
+ L E ++++ ++ D S++ IPN
Sbjct: 501 LPITDLPLTSEEPRLSTQPNSQQQENDKRSSVNIPNT 537
>gi|134109437|ref|XP_776833.1| hypothetical protein CNBC3240 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259513|gb|EAL22186.1| hypothetical protein CNBC3240 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1016
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 136/334 (40%), Positives = 187/334 (55%), Gaps = 37/334 (11%)
Query: 116 DVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIST 175
D + V P S ++TPF+ V+ + L + KLK E AVDLEH+ RS+ G TCL+QIST
Sbjct: 295 DSKPVPPQSFDETPFEFVDTPEKLHRMVEKLKQAKEIAVDLEHHDMRSYAGFTCLIQIST 354
Query: 176 RTEDFVVDTLKLRVQVGP-YLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
R D+VVDTL LR ++ +VF DPT KV HGAD DI+WLQRDF I++ N+FDT
Sbjct: 355 RESDWVVDTLALRKEIQQDKFGDVFTDPTIVKVFHGADSDIIWLQRDFEIFVVNLFDTYS 414
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
A VL++ + SL LL H+C A+K YQ ADWR+RPLPD ML YAR DTH+LL+IYD +
Sbjct: 415 ACVVLEMPQRSLSALLQHYCNFEADKRYQRADWRIRPLPDGMLYYARSDTHFLLFIYDNL 474
Query: 295 KIKL---SSMPKESENSDT------------PLTEVYKRSYDVCRQLYEKELLSENSYLH 339
+ L SS P N T + EV +S D ++YE+ +SY
Sbjct: 475 RNALLHKSSRPSSPANCGTIVLDSARPNPQEAMREVLGKSADTALKMYER-----DSYDI 529
Query: 340 IYGLQGAGLNA-------------QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
+ G G A + V L +WRD +AR DES Y++PN L ++
Sbjct: 530 VTGRGSGGWLAAGKKWLPKGEIEQESGWVWRHLHDWRDRVAREMDESPFYIMPNNMLRDV 589
Query: 387 AKQLPTTAAKLRRLLKSKHSYI-ERYMGPVLSII 419
+ T A L R+++ + I +Y+ + SI+
Sbjct: 590 STADNT--ANLSRIIRRDRAPIAAQYIPEITSIV 621
>gi|388579133|gb|EIM19461.1| hypothetical protein WALSEDRAFT_61456 [Wallemia sebi CBS 633.66]
Length = 789
Score = 238 bits (608), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 134/379 (35%), Positives = 208/379 (54%), Gaps = 21/379 (5%)
Query: 67 KPQEEYKIVVNNANQPFQHVWLQKSEDSG---------RFIHPLDN-LSVLDFVDKDIGD 116
KPQ ++ ++N++ P++ + K R HP + + + + +
Sbjct: 130 KPQLKWSSSIDNSDSPWKPLLTHKPNAKADLTWTTVDDRLSHPYQTEIESIKYPAQQLKT 189
Query: 117 VEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTR 176
+K QTPFK ++ + L L +L + E A+DLEH+ +RS+ G CLMQIS R
Sbjct: 190 QTPIKQGDFNQTPFKWIDNEESLNYLLDRLSTATEIAIDLEHHDFRSYRGFVCLMQISIR 249
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
EDF++DTL+LR Q+ L + F +P KV HGAD DIVWLQRDFG+Y+ NMFDT A+
Sbjct: 250 GEDFIIDTLELRDQLIK-LNDTFTNPAIVKVFHGADSDIVWLQRDFGVYIVNMFDTYHAT 308
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296
+VL ++SL LL FCG +K YQ ADWR RPL ++ML YAR DTHYLLYIYD+++
Sbjct: 309 KVLGFSQHSLASLLIKFCGYTPDKRYQRADWRKRPLTNKMLEYARSDTHYLLYIYDMLRN 368
Query: 297 KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQGAGLNA 350
L + K S+ +D L +V +RS V + + ++ ++ + ++ +
Sbjct: 369 TL--IEKSSKKNDM-LKDVLQRSEQVSLKTHHRDPYDYDTGKGFGGWYNLATKWNKVVEP 425
Query: 351 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK-HSYIE 409
L V L +WRD IAR +DES + N L ++A + P T ++ + + K ++
Sbjct: 426 PLLEVFRRLHQWRDQIARKEDESVHVIFSNHQLYDLALKQPKTPQEITNVFQKKVPQFVR 485
Query: 410 RYMGPVLSIIKNSMQNAAN 428
++ V I + ++ A N
Sbjct: 486 IHLKDVAQCINSGVEFAKN 504
>gi|389640871|ref|XP_003718068.1| exosome complex exonuclease Rrp [Magnaporthe oryzae 70-15]
gi|351640621|gb|EHA48484.1| exosome complex exonuclease Rrp [Magnaporthe oryzae 70-15]
Length = 828
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/349 (37%), Positives = 192/349 (55%), Gaps = 8/349 (2%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
V+ + + E+ LK E AVDLEH+ +R++ GL LMQISTR +D++VDTLK Q
Sbjct: 234 VDTYEGVLEMLEDLKQAKEIAVDLEHHDFRTYHGLLSLMQISTREKDWIVDTLKPWRQQL 293
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L EVF DP+ KV HGA DIVWLQRD G+Y+ +FDT A+ L SL YLL
Sbjct: 294 EILNEVFADPSIVKVFHGAFMDIVWLQRDLGLYVVGLFDTFHAAEALMYPSKSLAYLLKK 353
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPL 312
F A+K YQ ADWR+RPLP+EML YAR DTHYLLY+YD+M+ +L + L
Sbjct: 354 FVDFEADKRYQTADWRIRPLPEEMLYYARSDTHYLLYVYDMMRNELLRQSVSGDPHRDLL 413
Query: 313 TEVYKRSYDVCRQLYEKELL------SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
+RS D Q YE + + ++ + +Q +V L +WRD +
Sbjct: 414 ERTLQRSKDTALQRYEAYTIDGETGRGSRGWFNLIHRLPNTFSREQFSVYRALHKWRDDV 473
Query: 367 ARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 426
AR +DES +++ N+ L++IA+ +P TA LRRL + + + ++ +I++S Q
Sbjct: 474 ARREDESPMFLMSNQLLVDIARAMPETANDLRRLFTNVGPPVRNAVDELVDLIQDSRQKG 533
Query: 427 ANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDAL 475
A + + +K + A + + + D + K N G+ D DA+
Sbjct: 534 ATGPSLLEVIKADSANAAF--SNMTLTDAYRSAKTTNAGQGDDDIPDAV 580
>gi|116203503|ref|XP_001227562.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51]
gi|88175763|gb|EAQ83231.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51]
Length = 827
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 199/355 (56%), Gaps = 9/355 (2%)
Query: 93 DSGR--FIHPLDNLSV-LDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSV 149
D GR + HP + + + D E + P LE+T V+ + + E+ +LK
Sbjct: 187 DEGRPQYEHPYKQEIIDMQYPDHVFKSREPIGYPPLEKTTAIWVDTYEGVLEMLEELKKA 246
Query: 150 DEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMH 209
E A+DLEH+ +RS+ GL LMQISTR +D+++DTL L EVF DP KV+H
Sbjct: 247 PEIAIDLEHHDFRSYTGLLSLMQISTREKDWIIDTLVPWRHKLEVLNEVFADPKIVKVLH 306
Query: 210 GADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRV 269
GA DI+WLQRD G+Y+ +FDT AS L+ SL +LL F +A+K+YQ ADWR+
Sbjct: 307 GAFMDIIWLQRDLGLYVVGLFDTFYASTALQYAGKSLAFLLKKFVDFDADKKYQLADWRL 366
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
RPLP+EM YAR DTH+LLYIYD+++ +L+ + ++ + P V ++S +V Q YE
Sbjct: 367 RPLPEEMFYYARSDTHFLLYIYDMLRNELAQLATQNGSDGHPTDRVIQKSKEVALQRYEN 426
Query: 330 ELL-----SENSYLHIYGLQGAGL-NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 383
+ N H + + L +++Q AV + +WRD IAR +DES +++ + L
Sbjct: 427 SFCDPETGAGNRGWHATLTKSSTLYDSEQFAVYKAVHKWRDDIARQEDESPFFIMTQQVL 486
Query: 384 IEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKE 438
IA+ +PT L LL+S ++ +G + II + AN + Q ++
Sbjct: 487 SNIARIMPTDMKALWSLLESNTGALKSRLGELFKIITEAKAQGANGPTMLQFFRQ 541
>gi|315054289|ref|XP_003176519.1| exosome component 3'-5' exonuclease [Arthroderma gypseum CBS
118893]
gi|311338365|gb|EFQ97567.1| exosome complex exonuclease RRP6 [Arthroderma gypseum CBS 118893]
Length = 827
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 181/314 (57%), Gaps = 10/314 (3%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E T VE ++D++ + A+LK E AVDLEH+ + GL CLMQISTR +D++VDT
Sbjct: 246 VEGTKATFVETLEDVQRMLAQLKQAKEIAVDLEHHDGHVYHGLVCLMQISTREQDWIVDT 305
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LK L EVF DP+ KV+HG+ D++WLQRD G+YL +FDT A+ VL+L +
Sbjct: 306 LKPWRDQLQILNEVFADPSIVKVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASVLQLPKK 365
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LLH + G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI+D ++ +L ++ +
Sbjct: 366 SLKFLLHEYVGFDADKKYQTADWRIRPLLTGMLDYARSDTHFLLYIFDRLRNELLALDSD 425
Query: 305 SENSDTPLTE----VYKRSYDVCRQLYEKELL------SENSYLHIYGLQGAGLNAQQLA 354
++ E V +RS + Q YE+ + + L +Q A
Sbjct: 426 LSSAGVGGREAIECVLERSKESALQRYERPTYDAARGRGSGGWHDMLSTSPVALTREQFA 485
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 414
V L EWRD +AR DDEST VL R+L IA+++P + R+ + +
Sbjct: 486 VFRALHEWRDKVARTDDESTQTVLSKRSLFRIAQEMPEDKFAVLRMASPVSASLRSRTDE 545
Query: 415 VLSIIKNSMQNAAN 428
V ++I+ + Q A
Sbjct: 546 VAALIRQARQGGAT 559
>gi|313233556|emb|CBY09728.1| unnamed protein product [Oikopleura dioica]
Length = 790
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/269 (42%), Positives = 171/269 (63%), Gaps = 8/269 (2%)
Query: 124 SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVD 183
+L+ TP +VE + +L+ E AVDLEH++YRS+ G TCL+QIS+R +D+++D
Sbjct: 250 ALDDTPLSVVESSLSFNLMMQELREESELAVDLEHHRYRSYQGFTCLVQISSRQKDYILD 309
Query: 184 TLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLER 243
L + + L EVF +P K+ HG+ D++WLQRDFG+Y+ N+FDT A++ L L +
Sbjct: 310 PLAVWEDMYK-LNEVFANPKIVKIFHGSRNDMLWLQRDFGVYVVNLFDTFFAAKKLDLAK 368
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
SL+YLL H+C + +K +Q ADWR+RP+P MLRYAR+DTHYLLY+YD ++ L +
Sbjct: 369 KSLDYLLQHYCKIRLDKRFQLADWRMRPIPPNMLRYARQDTHYLLYVYDRLRADLEKL-- 426
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG-AGLNAQQLAVVAGLCEW 362
E T E+++ S + YEK + E+ Y +Y + N QQL + L W
Sbjct: 427 --EFGAT--REIFRLSREFSLSKYEKPIFGESDYKKLYESKNRKKFNNQQLKALELLYAW 482
Query: 363 RDVIARADDESTGYVLPNRTLIEIAKQLP 391
RD IAR +DEST YV+PN L+++++ LP
Sbjct: 483 RDQIARFEDESTDYVIPNHILLQVSEILP 511
>gi|440475179|gb|ELQ43880.1| exosome complex exonuclease RRP6 [Magnaporthe oryzae Y34]
gi|440487108|gb|ELQ66914.1| exosome complex exonuclease RRP6 [Magnaporthe oryzae P131]
Length = 854
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 131/349 (37%), Positives = 192/349 (55%), Gaps = 8/349 (2%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
V+ + + E+ LK E AVDLEH+ +R++ GL LMQISTR +D++VDTLK Q
Sbjct: 260 VDTYEGVLEMLEDLKQAKEIAVDLEHHDFRTYHGLLSLMQISTREKDWIVDTLKPWRQQL 319
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L EVF DP+ KV HGA DIVWLQRD G+Y+ +FDT A+ L SL YLL
Sbjct: 320 EILNEVFADPSIVKVFHGAFMDIVWLQRDLGLYVVGLFDTFHAAEALMYPSKSLAYLLKK 379
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPL 312
F A+K YQ ADWR+RPLP+EML YAR DTHYLLY+YD+M+ +L + L
Sbjct: 380 FVDFEADKRYQTADWRIRPLPEEMLYYARSDTHYLLYVYDMMRNELLRQSVSGDPHRDLL 439
Query: 313 TEVYKRSYDVCRQLYEKELL------SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
+RS D Q YE + + ++ + +Q +V L +WRD +
Sbjct: 440 ERTLQRSKDTALQRYEAYTIDGETGRGSRGWFNLIHRLPNTFSREQFSVYRALHKWRDDV 499
Query: 367 ARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 426
AR +DES +++ N+ L++IA+ +P TA LRRL + + + ++ +I++S Q
Sbjct: 500 ARREDESPMFLMSNQLLVDIARAMPETANDLRRLFTNVGPPVRNAVDELVDLIQDSRQKG 559
Query: 427 ANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDAL 475
A + + +K + A + + + D + K N G+ D DA+
Sbjct: 560 ATGPSLLEVIKADSANAAF--SNMTLTDAYRSAKTTNAGQGDDDIPDAV 606
>gi|157876102|ref|XP_001686412.1| putative exosome subunit rrp6p homologue [Leishmania major strain
Friedlin]
gi|68129486|emb|CAJ08029.1| putative exosome subunit rrp6p homologue [Leishmania major strain
Friedlin]
Length = 742
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 142/371 (38%), Positives = 207/371 (55%), Gaps = 18/371 (4%)
Query: 65 ITKPQEEYKIVVNNANQPF-QHVWLQKSEDSGRFI------HPLDN-LSVLDFVDKDIGD 116
I +PQ + V+N+ PF H + + SG++ HP ++ + I
Sbjct: 163 IRRPQLLFDTPVDNSAAPFVPHYY----DASGQYHVGVAGQHPFESVIKAFSIPASQILP 218
Query: 117 VEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTR 176
V P L+ P V+ ++ + KL E AVDLEH+ + S+ G TCLMQISTR
Sbjct: 219 RAEVPPVPLDACPLTFVDTSAAMQAMIEKLLLSREIAVDLEHHDFYSYQGFTCLMQISTR 278
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
EDF+VD LKLR +G L VF +P+ KV+HGA DI WLQ+DF +Y+ N+FDTG A
Sbjct: 279 EEDFIVDCLKLRSSMGA-LAPVFLNPSILKVLHGAREDIRWLQKDFSLYVVNLFDTGVAL 337
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK- 295
+ L + SL + + HFC V NK+YQ ADWRVRPL EM+ YAR+DTH+LLY++D +K
Sbjct: 338 QTLHMP-YSLAFAVDHFCQVKLNKKYQTADWRVRPLSAEMVHYARQDTHFLLYVHDRLKA 396
Query: 296 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQQLA 354
+ L+S + S S L VY S + Q+YEK ++ E +Y G +GLN Q
Sbjct: 397 LLLNSEGRASIGS--VLVHVYNESKQLSLQIYEKPNVVPEETYKMALGRSLSGLNKVQEK 454
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 414
V + WRD AR D+S VL +++ IA +LPTTA L R + + +
Sbjct: 455 VARDVFNWRDSAAREVDDSPTAVLHLSSVLSIASKLPTTAKALLRCCAPATAVVRDNVTL 514
Query: 415 VLSIIKNSMQN 425
++ ++K+++ +
Sbjct: 515 LVDLVKDAVAS 525
>gi|452835556|gb|AGG14045.1| exosome subunit RRP6p-like protein [Leishmania braziliensis]
Length = 735
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 130/309 (42%), Positives = 182/309 (58%), Gaps = 4/309 (1%)
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRT 177
E V P L+ P V+ ++ + AKL E AVDLEH+ + S+ G+TCLMQISTR
Sbjct: 221 EEVPPMPLDTCPLSFVDTPAAMQAMVAKLLLSSEIAVDLEHHDFYSYQGITCLMQISTRE 280
Query: 178 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 237
EDF+VD L+LR +G L VF +P KV+HGA DI WLQ+DF +YL N FDTG A +
Sbjct: 281 EDFIVDCLQLRSLMGT-LAPVFLNPLILKVLHGAREDIRWLQKDFSLYLVNFFDTGVALQ 339
Query: 238 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 297
L + SL + + HFC V NK++Q ADWRVRPL EM+ YAR+DTH+LLY+YD +K
Sbjct: 340 TLHMP-YSLAFAVDHFCQVKLNKKFQTADWRVRPLSAEMVHYARQDTHFLLYVYDRLKAL 398
Query: 298 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQQLAVV 356
L + + + L VYK S + QLYEK +++ E +Y G +GLN Q V
Sbjct: 399 LLNSEGRAIVGNL-LVHVYKESKQLSLQLYEKPQVVPEETYKIALGRSLSGLNKVQEKVA 457
Query: 357 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVL 416
+ WRD AR D+S VL +++ IA +LP TA +L R + + + ++
Sbjct: 458 RDVFNWRDSAAREVDDSPTAVLHLSSVLAIASKLPATAKELLRCCAPPTAVVRDNVALLV 517
Query: 417 SIIKNSMQN 425
+K+++ N
Sbjct: 518 DFVKDAVAN 526
>gi|449310638|gb|AGE92546.1| exosome subunit RRP6p-like protein [Leishmania braziliensis]
Length = 735
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 130/309 (42%), Positives = 182/309 (58%), Gaps = 4/309 (1%)
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRT 177
E V P L+ P V+ ++ + AKL E AVDLEH+ + S+ G+TCLMQISTR
Sbjct: 221 EEVPPMPLDTCPLSFVDTPAAMQAMVAKLLLSSEIAVDLEHHDFYSYQGITCLMQISTRE 280
Query: 178 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 237
EDF+VD L+LR +G L VF +P KV+HGA DI WLQ+DF +YL N FDTG A +
Sbjct: 281 EDFIVDCLQLRSLMGT-LAPVFLNPLILKVLHGAREDIRWLQKDFSLYLVNFFDTGVALQ 339
Query: 238 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 297
L + SL + + HFC V NK++Q ADWRVRPL EM+ YAR+DTH+LLY+YD +K
Sbjct: 340 TLHMP-YSLAFAVDHFCQVKLNKKFQTADWRVRPLSAEMVHYARQDTHFLLYVYDRLKAL 398
Query: 298 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQQLAVV 356
L + + + L VYK S + QLYEK +++ E +Y G +GLN Q V
Sbjct: 399 LLNSEGRAIVGNL-LVHVYKESKQLSLQLYEKPQVVPEETYKIALGRSLSGLNKVQEKVA 457
Query: 357 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVL 416
+ WRD AR D+S VL +++ IA +LP TA +L R + + + ++
Sbjct: 458 RDVFNWRDSAAREVDDSPTAVLHLSSVLAIASKLPATAKELLRCCAPPTAVVRDNVALLV 517
Query: 417 SIIKNSMQN 425
+K+++ N
Sbjct: 518 DFVKDAVAN 526
>gi|393212538|gb|EJC98038.1| hypothetical protein FOMMEDRAFT_149467 [Fomitiporia mediterranea
MF3/22]
Length = 845
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 185/311 (59%), Gaps = 10/311 (3%)
Query: 120 VKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTED 179
++P S E TPF ++ + L L +L+ V E AVDLEH+ YRSF G CLMQISTR ED
Sbjct: 241 IRPSSFENTPFTWIDSKEQLDLLLDQLRHVQEIAVDLEHHSYRSFSGFLCLMQISTREED 300
Query: 180 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 239
F++DTL LR ++ L E+F DP KV+HGAD D+VWLQ+DF IY+ N+FDT AS++L
Sbjct: 301 FIIDTLALREELE-ELNEIFTDPKIVKVLHGADSDVVWLQQDFNIYIVNLFDTYHASKLL 359
Query: 240 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
++ L LL +C +K YQ ADWR+RPLPDEM++YAR DTH+LLYIYD ++ +
Sbjct: 360 DFPKHGLGALLEMYCDFVPDKRYQLADWRIRPLPDEMMKYARSDTHFLLYIYDNLR---N 416
Query: 300 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS-ENSY----LHIYGLQ-GAGLNAQQL 353
++ + + RS D ++YE E EN + L+ G L+ Q
Sbjct: 417 ALLDRARGQPDLVRSALSRSEDTALRIYEPEFYDLENGTGPGGWNTLSLKWGRALSGTQH 476
Query: 354 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 413
V WRD +AR +DEST YV+PN L ++A++ PT A L + + +
Sbjct: 477 TVFRAAHAWRDALARKEDESTRYVMPNHYLFQLAERPPTDMANLLSIFRPVPPLVRTQAA 536
Query: 414 PVLSIIKNSMQ 424
+L +I+ +++
Sbjct: 537 SLLEVIRTAVK 547
>gi|63054485|ref|NP_593004.2| exosome 3'-5' exoribonuclease subunit Rrp6 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|6226742|sp|Q10146.2|RRP6_SCHPO RecName: Full=Exosome complex exonuclease rrp6; AltName:
Full=Ribosomal RNA-processing protein 6
gi|159883898|emb|CAA93168.2| exosome 3'-5' exoribonuclease subunit Rrp6 (predicted)
[Schizosaccharomyces pombe]
Length = 777
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 147/405 (36%), Positives = 218/405 (53%), Gaps = 49/405 (12%)
Query: 54 EKSKVPF---HVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFV 110
+K K+P+ H +TKPQ +++ NN+ + VW K + + PL+ + +
Sbjct: 120 KKEKLPYKVIHAAHLTKPQLRFRVQPNNSRE---FVWSWKLTEKPHSLVPLEKIIAQVKL 176
Query: 111 DKDIGDV----------EAVKPP------------SLEQTPFKLVEEVKDLKELAAKLKS 148
D + + +V PP S+++T V L ++ +L++
Sbjct: 177 DPSLKNSLPHPYEPEIQNSVYPPWVSEMSNPIDTGSVDETEPIWVSTESQLSDMLKELQN 236
Query: 149 VDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVM 208
E AVDLEH+ YRSF G CLMQIS R +D++VDTL+LR ++ L VF +P KV
Sbjct: 237 SKEIAVDLEHHDYRSFRGFVCLMQISNREKDWIVDTLELREELEA-LNVVFTNPNIIKVF 295
Query: 209 HGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWR 268
HGA DI+WLQRDFG+Y+ N+FDT A++VL E + L +LL +C +A+K YQ ADWR
Sbjct: 296 HGATMDIIWLQRDFGLYVVNLFDTYYATKVLGFEGHGLAFLLQKYCDYDADKRYQMADWR 355
Query: 269 VRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE 328
+RPLP EML+YA+ DTHYLLYI+D ++ +L S K +E + + V+ S + + YE
Sbjct: 356 IRPLPREMLKYAQSDTHYLLYIWDHLRNELIS--KSAERKENLMQSVFNSSKQISLRKYE 413
Query: 329 KELLSENSYLHIYGLQGAG-------------LNAQQLAVVAGLCEWRDVIARADDESTG 375
E Y IYGL G + + L + L +WRD +AR +DES
Sbjct: 414 LE-----PYDPIYGLGTDGWRNVLTKFGSSKIIGREALMIYRALHDWRDSVARKEDESVR 468
Query: 376 YVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK 420
YVLPNR LI IA P AA + + K Y+ ++ +++
Sbjct: 469 YVLPNRLLIAIAASKPVEAADVFSISKQLTPIARMYVEDIVKVVQ 513
>gi|154336623|ref|XP_001564547.1| putative exosome subunit rrp6p homologue [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061582|emb|CAM38612.1| putative exosome subunit rrp6p homologue [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 735
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 130/309 (42%), Positives = 181/309 (58%), Gaps = 4/309 (1%)
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRT 177
E V P L+ P V+ ++ + AKL E AVDLEH+ + S+ G+TCLMQISTR
Sbjct: 221 EEVPPMPLDTCPLSFVDTPAAMQAMVAKLLLSSEIAVDLEHHDFYSYQGITCLMQISTRE 280
Query: 178 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 237
EDF+VD L+LR +G L VF +P KV+HGA DI WLQ+DF +YL N FDTG A +
Sbjct: 281 EDFIVDCLQLRSLMGT-LAPVFLNPLILKVLHGAREDIRWLQKDFSLYLVNFFDTGVALQ 339
Query: 238 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 297
L + SL + + HFC V NK++Q ADWRVRPL EM+ YAR+DTH+LLY+YD +K
Sbjct: 340 TLHMP-YSLAFAVDHFCQVKLNKKFQTADWRVRPLSAEMVHYARQDTHFLLYVYDRLKAL 398
Query: 298 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQQLAVV 356
L + + + L VYK S + QLYEK ++ E +Y G +GLN Q V
Sbjct: 399 LLNSEGRAIVGNL-LVHVYKESKQLSLQLYEKPHVVPEETYKIALGRSLSGLNKVQEKVA 457
Query: 357 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVL 416
+ WRD AR D+S VL +++ IA +LP TA +L R + + + ++
Sbjct: 458 RDVFNWRDSAAREVDDSPTAVLHLSSVLAIASKLPATAKELLRCCAPPTAVVRDNVALLV 517
Query: 417 SIIKNSMQN 425
+K+++ N
Sbjct: 518 DFVKDAVAN 526
>gi|449548764|gb|EMD39730.1| hypothetical protein CERSUDRAFT_112032 [Ceriporiopsis subvermispora
B]
Length = 850
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 146/401 (36%), Positives = 207/401 (51%), Gaps = 49/401 (12%)
Query: 98 IHPLD-NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDL 156
+HP ++ D+ + V P T F V + E+ A L++ E A+DL
Sbjct: 207 LHPYRYEITHTDYPARMFRTASPVAPRGFADTQFTWVADRAAFDEMLAHLRTAQEIALDL 266
Query: 157 EHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIV 216
EH+ +RSF G CLMQISTR DF+VD L++R ++ L EV DP KV+HGA+ DIV
Sbjct: 267 EHHSFRSFGGFVCLMQISTRERDFIVDVLQVREEM-EELNEVLTDPRIVKVLHGAESDIV 325
Query: 217 WLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEM 276
WLQ+DF +Y+ N+FDT AS+VL+ R++L LL +C +K YQ ADWR+RPLP+EM
Sbjct: 326 WLQQDFNLYVVNLFDTYHASKVLEFPRHNLGTLLEMYCDFTPDKRYQLADWRIRPLPEEM 385
Query: 277 LRYAREDTHYLLYIYDIMKIKL--------------SSMPKESENSDTP-----LTEVYK 317
L+YAR DTH+LLYIYD ++ L +S P +DT + EV
Sbjct: 386 LQYARSDTHFLLYIYDNLRNALLDRAQSRAQSPSASASTPPSPAGADTDPAHALVREVLA 445
Query: 318 RSYDVCRQLYEKELLSENSYLHIYG-----------------LQGA--GLNAQQLAVVAG 358
RS ++YEKE + L G + GA + Q AV
Sbjct: 446 RSATTALRVYEKERYDPDQGLGPGGWDTLARKWNKGALVAPPVHGADSAVARTQRAVYRA 505
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 418
+ WRD ++RA+DEST YVLPN L +A++ P A L L + + R +L
Sbjct: 506 VHAWRDRVSRAEDESTRYVLPNHALFALAERTPADMAALLALFRPVPPVVRRRAQELLDT 565
Query: 419 IKNSMQNAAN--FEVIAQKLKEE-------RMEVASEETEV 450
++ +++ A EV A ++ E R EV +E EV
Sbjct: 566 VRAAVKEALGGPVEVPATEVVETEKVDSDVREEVDTEAVEV 606
>gi|310792006|gb|EFQ27533.1| 3'-5' exonuclease [Glomerella graminicola M1.001]
Length = 882
Score = 235 bits (599), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 144/370 (38%), Positives = 205/370 (55%), Gaps = 27/370 (7%)
Query: 65 ITKPQEEYKIVVNN--------ANQPFQHVWLQKS-----EDSG--RFIHPLDNLSVLD- 108
ITKPQ + +V+N +P V L+KS D G ++ HP + +L+
Sbjct: 140 ITKPQLHFTRIVDNNTTWKPIITEKPHATVPLEKSLVTSETDDGFIQYKHPYET-EILEA 198
Query: 109 -FVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGL 167
+ D+ E + +E T V+ + + E+ LK +E AVDLEH+ +R+++GL
Sbjct: 199 KYPDRVYEQAEPIPWQPVETTEATYVDTYEGVLEMLEDLKKANEIAVDLEHHDFRTYVGL 258
Query: 168 TCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLC 227
T LMQISTR +D++VDTLK + L EVF DP+ KV HGA D+VWLQRD G+Y+
Sbjct: 259 TSLMQISTREKDWIVDTLKPWREQLQVLNEVFADPSIIKVFHGAFMDMVWLQRDLGLYVN 318
Query: 228 NMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL 287
+FDTG A VL + SL +LL F +A+K+YQ ADWRVRPL +EML YAR DTHYL
Sbjct: 319 GLFDTGMACEVLHYPQKSLAFLLKKFVNFDADKKYQLADWRVRPLSEEMLYYARSDTHYL 378
Query: 288 LYIYDIMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS------YLHI 340
LYIYD M+ +L M + N T E ++S + Y E + + +
Sbjct: 379 LYIYDKMRNELV-MKSDRGNPSTDYIEATLQKSKTLSLSRYGGETFDPKTGKGNKGWYNT 437
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ QQ AV + WRD +AR +DEST +V+PN + +IAK +P A L L
Sbjct: 438 LLRHPMPFSGQQFAVYRAIWAWRDEVARREDESTPFVMPNAIIGDIAKHMPPDAKALHAL 497
Query: 401 LKSKHSYIER 410
+ + H++I R
Sbjct: 498 IPN-HAFIAR 506
>gi|313213333|emb|CBY37160.1| unnamed protein product [Oikopleura dioica]
Length = 689
Score = 235 bits (599), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 115/269 (42%), Positives = 171/269 (63%), Gaps = 8/269 (2%)
Query: 124 SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVD 183
+L+ TP +VE + +L+ E AVDLEH++YRS+ G TCL+QIS+R +D+++D
Sbjct: 250 ALDDTPLSVVESSLSFNLMIQELREESELAVDLEHHRYRSYQGFTCLVQISSRQKDYILD 309
Query: 184 TLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLER 243
L + + L EVF +P K+ HG+ D++WLQRDFG+Y+ N+FDT A++ L L +
Sbjct: 310 PLAVWEDMYK-LNEVFANPKIVKIFHGSRNDMLWLQRDFGVYVVNLFDTFFAAKKLDLAK 368
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
SL+YLL H+C + +K +Q ADWR+RP+P MLRYAR+DTHYLLY+YD ++ L +
Sbjct: 369 KSLDYLLQHYCKIRLDKRFQLADWRMRPIPPNMLRYARQDTHYLLYVYDRLRADLEKL-- 426
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG-AGLNAQQLAVVAGLCEW 362
E T E+++ S + YEK + E+ Y +Y + N QQL + L W
Sbjct: 427 --EFGAT--REIFRLSREFSLSKYEKPIFGESDYKKLYESKNRKKFNNQQLKALELLYAW 482
Query: 363 RDVIARADDESTGYVLPNRTLIEIAKQLP 391
RD IAR +DEST YV+PN L+++++ LP
Sbjct: 483 RDQIARFEDESTDYVIPNHILLQVSEILP 511
>gi|270007326|gb|EFA03774.1| hypothetical protein TcasGA2_TC013885 [Tribolium castaneum]
Length = 890
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/323 (39%), Positives = 193/323 (59%), Gaps = 22/323 (6%)
Query: 65 ITKPQEEYKIVVNNANQ-PFQ-------------HVWLQKSEDSGRFIHPLD-NLSVLDF 109
I +PQ+ +K ++N N+ P+ ++L++ ED + HP + L
Sbjct: 176 IIRPQKFFKDQIDNRNKTPWSPRITEKPNSLKPLAIFLEEYEDRQEYSHPYEFELDRFQP 235
Query: 110 VDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTC 169
+ D ++V P SL TP +++ + L EL L+ EF+VD+EH+ YRSF+G+TC
Sbjct: 236 TPSQLIDEKSVPPKSLSDTPLIEIDKAEQLDELVETLRHCKEFSVDVEHHSYRSFMGITC 295
Query: 170 LMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 229
L+QIST +D+++D L LR ++ L EVF T K+ HGAD+DI WLQRD +Y+ NM
Sbjct: 296 LIQISTEDKDYLIDALALRDKLS-ILNEVFTKNTIVKIFHGADKDIEWLQRDLSLYVVNM 354
Query: 230 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 289
FDT QA++ L+ SL +L+ FC V NK++Q ADWR+RPLPDE+ YAREDTHYL+Y
Sbjct: 355 FDTHQAAKALQYPALSLAFLMKKFCNVTPNKQFQLADWRIRPLPDELKSYAREDTHYLIY 414
Query: 290 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 349
IY +MK +L ++ D L V +RS +VC++ Y K +L E+S+L +Y +
Sbjct: 415 IYKMMKRELLH---KTNKCDKLLRSVIERSTEVCKKRYFKPILHEDSHLELYRKCKKMFD 471
Query: 350 AQQLAVVAGLCEWRDVIARADDE 372
+Q+ + L E +I +A ++
Sbjct: 472 NRQM---SHLLELHQIILKAREQ 491
>gi|321254177|ref|XP_003192989.1| exosome complex exonuclease RRP6 [Cryptococcus gattii WM276]
gi|317459458|gb|ADV21202.1| Exosome complex exonuclease RRP6 (Ribosomal RNA processing protein
6), putative [Cryptococcus gattii WM276]
Length = 851
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 180/329 (54%), Gaps = 27/329 (8%)
Query: 116 DVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIST 175
D + V P S ++TPF+ V+ + + KLK E AVDLEH+ RS+ G TCL+QIST
Sbjct: 138 DSKPVPPQSFDETPFEFVDTPEKFHRMVGKLKQAKEIAVDLEHHDMRSYSGFTCLIQIST 197
Query: 176 RTEDFVVDTLKLRVQVGP-YLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
R D+VVDTL LR ++ +VF DPT KV HGAD DIVWLQRDF I++ N+FDT
Sbjct: 198 RENDWVVDTLSLRKEIQQDKFGDVFTDPTVVKVFHGADSDIVWLQRDFEIFVVNLFDTYN 257
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
A VL + + SL LL H+C A+K YQ ADWR+RPLPD ML YAR DTH+LL+IYD +
Sbjct: 258 ACVVLGMPQRSLSALLQHYCNFEADKRYQRADWRIRPLPDGMLNYARSDTHFLLFIYDNL 317
Query: 295 KIKLSS---------------MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLH 339
+ L + N + EV +S + ++YE++ +
Sbjct: 318 RNALLHKSSRPSSPAASGTIVLDSAKPNPQEAMREVLDKSAETALKMYERDSYDIETGRG 377
Query: 340 IYGLQGAG--------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
G AG + + V L +WRD +AR DES YV+PN L +++
Sbjct: 378 SGGWLAAGKKWLPKGEIEQESGWVWRHLHDWRDRVAREMDESPFYVMPNNMLRDVSTA-- 435
Query: 392 TTAAKLRRLLKSKHSYI-ERYMGPVLSII 419
A L R+++ + I +Y+ + SII
Sbjct: 436 DNTANLSRIIRRDRAPIAAQYIPEITSII 464
>gi|409075144|gb|EKM75528.1| hypothetical protein AGABI1DRAFT_79866 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 882
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 145/441 (32%), Positives = 212/441 (48%), Gaps = 76/441 (17%)
Query: 61 HVPTITKPQEEYKIVVNNANQPFQ--------------HVWLQKSEDSGRFI-HPLD-NL 104
H + KPQ +K +N + P+ HV+ +D+ HP +
Sbjct: 157 HASQLPKPQLSFKYKADNDDAPWYPSLTHKYNALVPLGHVYADADDDTTVIANHPYRYEI 216
Query: 105 SVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSF 164
+ + + P SL +TP+ + L+ + KL++ E AVDLEH+ YR++
Sbjct: 217 NHITYPSHVYAPANPSPPASLAETPYSWISTPDGLQNMLTKLRAASEIAVDLEHHSYRTY 276
Query: 165 LGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGI 224
LG CLMQISTR EDFVVD + LR ++ L EVF DP KV HGA+ DIVWLQ+DF +
Sbjct: 277 LGFLCLMQISTREEDFVVDVIALRDEME-VLNEVFTDPKIVKVFHGAESDIVWLQQDFNL 335
Query: 225 YLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 284
Y+ N+FDT AS++L+ R+ L LL +C +K YQ ADWR+RPLP EML YAR DT
Sbjct: 336 YVVNLFDTYHASKLLEFPRHGLANLLEMYCDYIPDKRYQLADWRIRPLPKEMLEYARSDT 395
Query: 285 HYLLYIYDIMKIK------------------------------LSSMPKESENSDTPL-- 312
H+LL+IYD ++ L + P + S PL
Sbjct: 396 HFLLFIYDNLRNALLDRGGPASRSRSSSPPNASTSLSTPPANILRTPPPTAHASKNPLHA 455
Query: 313 --TEVYKRSYDVCRQLYEKELLSENSYLHIYGL------------------------QGA 346
V RS + C ++Y KE+ +S G +G
Sbjct: 456 SINHVLTRSSETCLRVYVKEVYDRSSGTGSNGWDTLARKWNKPLFTALSFSYQSSSDEGH 515
Query: 347 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK-H 405
+ Q AV + WR+ ++R +DEST YVLPN+ L IA+ P L RL S
Sbjct: 516 NVPEMQKAVYRAVHWWRESVSREEDESTRYVLPNQYLFRIAEAPPGDLGNLLRLFGSSVP 575
Query: 406 SYIERYMGPVLSIIKNSMQNA 426
++R +L +++N+++ +
Sbjct: 576 VVVKRRAKELLDVVRNAVKRS 596
>gi|226487924|emb|CAX75627.1| Exosome component 10 [Schistosoma japonicum]
Length = 860
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 120/279 (43%), Positives = 173/279 (62%), Gaps = 13/279 (4%)
Query: 114 IGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQI 173
+ D VKP + ++ ++++ L++ L AVDLEH+ YRSFLG+TCL+QI
Sbjct: 245 LSDDFTVKP---LDSSYQYIDKLDTLEQTVKSLSVCRYIAVDLEHHSYRSFLGITCLIQI 301
Query: 174 STRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG 233
ST D+++D L L + L EVF DP KV HG+D D++WLQRDFG+Y+ N+FDTG
Sbjct: 302 STLDTDYIIDALALHDHLS-ILNEVFTDPKIVKVFHGSDSDLMWLQRDFGVYVVNLFDTG 360
Query: 234 QASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDI 293
A+R+L+ R SL YLL + +N NK+YQ ADWR+RPLP+E++ YAR DTHYLL+I
Sbjct: 361 VAARLLQHGRFSLSYLLQRYVNINPNKKYQLADWRIRPLPNELIEYARTDTHYLLHI--- 417
Query: 294 MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG-AGLNAQQ 352
S M +E ++ + L+ ++R+ +C + Y K + + YL +Y G + + +Q
Sbjct: 418 ----ASRMCRELQDRNL-LSVTFERARQLCLKCYTKPVFNRLGYLDLYKQTGCSSFSHRQ 472
Query: 353 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
L + L RD IAR +DES YVLPN L IA+ LP
Sbjct: 473 LYALENLHALRDSIARREDESLHYVLPNHMLKVIAEVLP 511
>gi|302817816|ref|XP_002990583.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii]
gi|300141751|gb|EFJ08460.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii]
Length = 1449
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 219/389 (56%), Gaps = 33/389 (8%)
Query: 67 KPQEEYK-IVVNNANQPFQHVWLQ-KSEDSGRFIHPL-DNLSVLDFVDKDIGDVEAVKPP 123
KPQ+ +K I+ +N PF H+ + K EDS HP D + L + E +P
Sbjct: 699 KPQKRFKRILADNTPLPFVHLEIPGKGEDS----HPYGDEIRAL-LEGPVLPLFETEQPL 753
Query: 124 SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVD 183
+ + PF +E + L++LA L EFAVD E + RSFLG T L+QIST D+++D
Sbjct: 754 AEMEEPFVWIETKEALEDLAQVLSEESEFAVDTEQHSIRSFLGFTALIQISTYKRDYLID 813
Query: 184 TLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLER 243
+ L ++ LR VF + + KV HGAD DI+WLQRDF IY+ N+FDT +A VL +
Sbjct: 814 AIALHDEME-TLRPVFANASICKVFHGADSDILWLQRDFHIYVVNLFDTARACDVLGKPQ 872
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
SL YLL +C ++ NK +Q +DWR RPLP+++L YAR D H+LLYI + +L +
Sbjct: 873 RSLAYLLQTYCNISTNKAFQKSDWRQRPLPEDILLYARSDAHFLLYIARKLYSEL--LQG 930
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYG-LQGAGLNAQQLAVVAG---- 358
E++ ++ PL +RS+ +C QLYEK+ S ++ ++ Q + L+ + A +
Sbjct: 931 ETDLANAPLQMATRRSHLICLQLYEKDASSASAAASLFSKFQESNLDKPREASMRRRLRL 990
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR-----------------LL 401
LCEWRD +AR +DES +VL + ++ IA+ LP T ++ R LL
Sbjct: 991 LCEWRDAVARIEDESLRFVLSDAAIVAIARTLPRTGKEVYRSIHAADMATSTDSSKTSLL 1050
Query: 402 KSKHSYIERYMGPVLSIIKNSMQNAANFE 430
S ++R++ ++ IK+S NA + E
Sbjct: 1051 PSPSPLVKRHISSLILAIKDSAANATSGE 1079
>gi|367047893|ref|XP_003654326.1| hypothetical protein THITE_2117244 [Thielavia terrestris NRRL 8126]
gi|347001589|gb|AEO67990.1| hypothetical protein THITE_2117244 [Thielavia terrestris NRRL 8126]
Length = 882
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 137/398 (34%), Positives = 209/398 (52%), Gaps = 24/398 (6%)
Query: 65 ITKPQEEYKIVVNN----------ANQPFQHVWLQKS-------EDSGRFIHPLDN-LSV 106
I KPQ ++ +N N+P V L+ S E ++ HP ++ ++
Sbjct: 145 ILKPQNAFEKKTDNFESGPWKPLLTNKPHAQVPLESSLELFTDEEGHPQYKHPYEHEITT 204
Query: 107 LDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLG 166
+ + + E K +E++ V+ + E+ +LK E A+DLEH+ YR++ G
Sbjct: 205 MRYPTEVSQPCEPKKYLPIEKSKAIWVDTYDGVLEMLEELKQATEIAIDLEHHDYRTYAG 264
Query: 167 LTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYL 226
L LMQISTR +D++VDTL L EVF DP KV+HGA DI+WLQRD G+Y+
Sbjct: 265 LLSLMQISTREKDWIVDTLVPWRHKLEVLNEVFADPRIVKVLHGAFMDIIWLQRDLGLYV 324
Query: 227 CNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHY 286
+FDT A L SL +LL F +A+K+YQ ADWR+RPLPDEM YAR DTHY
Sbjct: 325 VGLFDTYYACDALGYAGRSLAFLLKKFADFDADKKYQLADWRIRPLPDEMFYYARSDTHY 384
Query: 287 LLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 346
LLYIYD+++ +L+ + +S + P+ V ++S +V Q Y L + G
Sbjct: 385 LLYIYDMLRNELAELSAQSPPGEKPIDRVIQKSKEVSLQRYVHPLCDRETGAGSRGWYNT 444
Query: 347 GL------NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ N +Q AV + +WRD +AR +DES Y++ + L +IA+ LPT L L
Sbjct: 445 LIKSPTLYNGEQFAVYKAVHKWRDDVARREDESPYYIMTQQVLADIARILPTDPKALWSL 504
Query: 401 LKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKE 438
L S ++ + + +I+ + AN + + K+
Sbjct: 505 LDSNARALKPRLTELFGVIERARAAGANGPTMMEFFKQ 542
>gi|28278907|gb|AAH45429.1| Zgc:55695 protein [Danio rerio]
Length = 500
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 140/341 (41%), Positives = 194/341 (56%), Gaps = 38/341 (11%)
Query: 15 NGEGDGNEG-GFQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPFHV-----PTITKP 68
N +G G+ FQL+ KN ++ +K +D+ + S PF P KP
Sbjct: 161 NRKGGGSRAQTFQLLAAKNIQR---------PQLKFRDKVDNSNTPFLSKIFIKPNAVKP 211
Query: 69 QEEY------------KIVVNNANQPFQHVWLQKSEDSGRFIHP----LDNLSVLDFVDK 112
Y + V A F H K F HP LD+L + + + K
Sbjct: 212 LPSYFADKHIRKERPEDLDVPAALADFIHQQRTKEHVDDMFSHPYQYELDHLVMPENL-K 270
Query: 113 DIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQ 172
+V+ KP +++TP + + ++DL L KL EFAVDLEH+ YRSFLG+TCLMQ
Sbjct: 271 CKPEVQMYKP--IDETPCQFISTLEDLVALNEKLAKTTEFAVDLEHHSYRSFLGITCLMQ 328
Query: 173 ISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 232
ISTR EDF++DTL+LR ++ L E F DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 329 ISTREEDFIIDTLELRSEMY-ILNETFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 387
Query: 233 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 292
A+R L L RNSL++LL +C V+++K YQ ADWR+RPLPDEML+YA+ DTHYLLY+YD
Sbjct: 388 HHAARCLNLGRNSLDHLLKVYCDVSSDKRYQLADWRIRPLPDEMLKYAQADTHYLLYVYD 447
Query: 293 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS 333
++ L T + +V+ +S D+ + Y K + +
Sbjct: 448 RVRADLFD---GGNGQATLIQQVWTKSRDLSLKKYVKPIFT 485
>gi|407850984|gb|EKG05126.1| hypothetical protein TCSYLVIO_003804 [Trypanosoma cruzi]
Length = 713
Score = 231 bits (590), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 214/372 (57%), Gaps = 14/372 (3%)
Query: 64 TITKPQEEYKIVVNNANQPFQHVWL-QKSE-DSGR-FIHP----LDNLSVLDFVDKDIGD 116
+ +PQ ++ V+N+ PF V+ +K E G+ IHP + N+S+ + ++ I
Sbjct: 143 CVLRPQLTFEHPVDNSPTPFCPVYYDEKGERHVGQPGIHPFAELIKNMSMPE--EQLIRR 200
Query: 117 VEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTR 176
VE P L Q P + V+ DL+E+ A L E AVDLEH+ + S+ G TCLMQISTR
Sbjct: 201 VETPYLP-LAQCPLRFVDATVDLEEVVALLLKEKEIAVDLEHHSFYSYQGFTCLMQISTR 259
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
+ED ++D LKLR + L VF +P KV+HGA DI WLQ+DFG+YL N FDTG A
Sbjct: 260 SEDILIDCLKLR-SLMHLLAPVFLNPNILKVLHGAREDIRWLQKDFGLYLVNFFDTGIAL 318
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296
+ L + + L + + HFC V +K+YQ ADWR+RP+P EM+ YAR+DTH+LLY+YD +K
Sbjct: 319 QTLHMP-HGLAFAVDHFCQVKLDKKYQTADWRIRPIPAEMVTYARQDTHFLLYVYDRLKT 377
Query: 297 KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQQLAV 355
L + + + L V S + ++YEK +L + SY G GL++ Q+ V
Sbjct: 378 LLLNSEGRASIGNL-LVHVLNESRRLSLEIYEKPQLDPDASYKIALGRSLGGLSSVQMQV 436
Query: 356 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPV 415
+ WRD IAR D+S VL ++ IA +LPT+A + + + + +
Sbjct: 437 AREIFNWRDAIAREVDDSPPAVLRLSAVLAIATKLPTSANDVLKCCTPVSMVVRTNVTRL 496
Query: 416 LSIIKNSMQNAA 427
+ I+K+S+ + A
Sbjct: 497 VQIVKDSVGDDA 508
>gi|118372761|ref|XP_001019575.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89301342|gb|EAR99330.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 881
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/306 (42%), Positives = 178/306 (58%), Gaps = 10/306 (3%)
Query: 127 QTPFKLVEEV------KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDF 180
Q P L EE+ L E+ LK E A+DLEH+ YRSF G+TCLMQIS+RT+D+
Sbjct: 235 QEPISLKEELVFVDKEDILDEMIESLKQCSEVAIDLEHHSYRSFNGITCLMQISSRTKDY 294
Query: 181 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 240
+VD + + L V D KV+HGAD DI WLQRDFGIY+ N+FDTGQA+R L
Sbjct: 295 IVDVFSVWKSLHK-LNAVTTDKNIVKVLHGADMDIQWLQRDFGIYIVNLFDTGQAARTLS 353
Query: 241 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300
+ +L YLL V +K+YQ ADWR+RPLP EM+ YAR DTHYLL IYD ++I+L S
Sbjct: 354 MPSYALAYLLQSISKVPTDKKYQLADWRIRPLPREMISYARSDTHYLLSIYDNLRIQLVS 413
Query: 301 MP-KESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 359
++ +N+ + V +S +C + Y K +L + Y I Q L+ ++ ++ L
Sbjct: 414 KALQQGQNASHFIESVLNKSRAICLKKYVKPILDDEKYHSILQNQRIILSDRKFRILKRL 473
Query: 360 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG-PVLSI 418
EWR +A DE+ +VL N L I +LP T + K SY+ +Y +LSI
Sbjct: 474 LEWRYKMAAKYDENPTFVLANDILFNIVNRLPQTQKEFAS-SNLKLSYVCQYHANEILSI 532
Query: 419 IKNSMQ 424
IK ++
Sbjct: 533 IKEEIE 538
>gi|407923871|gb|EKG16934.1| hypothetical protein MPH_05915 [Macrophomina phaseolina MS6]
Length = 817
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/320 (38%), Positives = 175/320 (54%), Gaps = 10/320 (3%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
E T V+ + L E+ A+LKS E A+DLEH+ R+++G+ CLMQISTR +D++VDT
Sbjct: 214 FESTTATFVDTPEALDEMLAELKSAKEIAIDLEHHDTRTYIGIVCLMQISTRNKDWIVDT 273
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LK + L EVF DP KV+HGA D +WLQRD G+YL +FDT A+R L
Sbjct: 274 LKPWRRRLQALNEVFTDPHILKVLHGAYMDAIWLQRDLGLYLVGLFDTHHAARALGYSGG 333
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL +LL F NA K+YQ ADWR+RPLP E+ YAR DTH+LLYIYD M+ +L
Sbjct: 334 SLAFLLQKFIHFNAQKQYQTADWRMRPLPQELFDYARSDTHFLLYIYDNMRNELVDKSSF 393
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA------GLNAQQLAVVAG 358
+ + V ++S + Q YE + G A N +Q +V
Sbjct: 394 DDPEQDRVLRVLEKSKETALQTYENPIYDAKEGSGPMGWYKALYRNPNAFNKEQFSVFKA 453
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 418
+ +WRD +AR +DEST YV+ N L +A+ +P A L + + + ++ I
Sbjct: 454 VHQWRDTVARQEDESTHYVMANHALFSVARSIPLDKAALFNVAQPISPIVRLRADELVGI 513
Query: 419 IKNSMQNAAN----FEVIAQ 434
I + + A+ +EV A+
Sbjct: 514 ITRAKEAGADGPEMWEVFAK 533
>gi|390603116|gb|EIN12508.1| hypothetical protein PUNSTDRAFT_97267 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 870
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/380 (36%), Positives = 187/380 (49%), Gaps = 50/380 (13%)
Query: 61 HVPTITKPQEEYKIVVNNANQ-----PFQHVWLQKSEDSGRF------------IHPLD- 102
H + KPQ + V+NA+Q +H + + RF IHP
Sbjct: 168 HASHLRKPQLSFTRTVDNASQDPWKPTLKHKYNAQVPLGYRFQDEEGGDATSAGIHPYHY 227
Query: 103 NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYR 162
++ + + + P S +TPF V + KL+ D AVDLEH+ YR
Sbjct: 228 EITHVSYPAHLFSPGQPTPPKSFAETPFTWVATPAAFALMLEKLRLADAIAVDLEHHSYR 287
Query: 163 SFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDF 222
+F G CLMQISTRTED++VDTL LR ++ L EVF DP KV HGA+ DI WLQ+DF
Sbjct: 288 TFAGFVCLMQISTRTEDWIVDTLVLRDELEE-LNEVFTDPRIVKVFHGAESDIQWLQQDF 346
Query: 223 GIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARE 282
+++ +FDT AS+VL R+ L LL +C A+K YQ ADWR+RPLP EML YAR
Sbjct: 347 NVFVVGLFDTFHASKVLHFPRHGLASLLEMYCDFIADKRYQLADWRIRPLPQEMLDYARS 406
Query: 283 DTHYLLYIYDIMKIKL----------------------SSMPKESENSDTPLTEVYKRSY 320
DTHYLLYIYD ++ L S S+ + L EV RS
Sbjct: 407 DTHYLLYIYDHLRHALLERGTSPAFAAYTPVDITLETPISHLTPSDGATWLLREVLARSA 466
Query: 321 DVCRQLYEKELLSE---------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 371
+ +E+EL ++ + + Q AV + WRD +AR +D
Sbjct: 467 QTTLRTFERELYDADNGTGPAGWDTLARKWNKSAGAMPPVQRAVYRAVHAWRDRVAREED 526
Query: 372 ESTGYVLPNRTLIEIAKQLP 391
ES YVLPN L +IA+ P
Sbjct: 527 ESARYVLPNHYLFQIAESPP 546
>gi|407404412|gb|EKF29876.1| hypothetical protein MOQ_006321 [Trypanosoma cruzi marinkellei]
Length = 713
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 143/384 (37%), Positives = 215/384 (55%), Gaps = 19/384 (4%)
Query: 64 TITKPQEEYKIVVNNANQPFQHVWLQ---KSEDSGRFIHP----LDNLSVLDFVDKDIGD 116
++ +PQ ++ V+N+ PF V+ K IHP + N+S+ + ++ I
Sbjct: 143 SVLRPQLTFEHPVDNSPTPFCPVYYDEKGKRHVGKPGIHPFAELIKNMSMPE--EQLIRR 200
Query: 117 VEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTR 176
VE P L Q P + V+ DL+E+ A L E AVDLEH+ + S+ G TCLMQISTR
Sbjct: 201 VETPYLP-LAQCPLRFVDATVDLEEVVALLLKEKEIAVDLEHHSFYSYQGFTCLMQISTR 259
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
+ED ++D LKLR + L VF + KV+HGA DI WLQ+DFG+YL N FDTG A
Sbjct: 260 SEDILIDCLKLRSSMH-LLAPVFLNSNILKVLHGAREDIRWLQKDFGLYLVNFFDTGIAL 318
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296
+ L + + L + + HFC V NK+YQ ADWR+RP+P EM+ YAR+DTH+LLY+YD +K
Sbjct: 319 QTLHMP-HGLAFAVDHFCQVKLNKKYQTADWRIRPIPAEMVAYARQDTHFLLYVYDRLKT 377
Query: 297 KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQQLAV 355
L + + + L V S + ++YEK +L + SY G GL++ QL V
Sbjct: 378 LLLNSEGRASIGNL-LVHVLNESRRLSLEIYEKPQLDPDASYKVALGRSLGGLSSMQLQV 436
Query: 356 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPV 415
+ WRD AR D+S VL ++ IA +LPT+A + + + + +
Sbjct: 437 AREIFNWRDATAREVDDSPPAVLHLSAVLAIATKLPTSANDVLKCCTPVSMVVRTNVTRL 496
Query: 416 LSIIKNSMQNAA-----NFEVIAQ 434
+ I+K+++ + A +F+V A+
Sbjct: 497 VQIVKDAVGDDAIAKNSDFDVKAE 520
>gi|440640360|gb|ELR10279.1| hypothetical protein GMDG_04665 [Geomyces destructans 20631-21]
Length = 782
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 181/319 (56%), Gaps = 6/319 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E T V+ + + E+ A+L++ E A+DLEH+ RS+ GL LMQISTR +D++VDT
Sbjct: 216 VESTSATFVDTYEGVLEMLAELRTAKEIAIDLEHHDARSYTGLVSLMQISTREKDWIVDT 275
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LK Q L EVF DP KV+HGA DI+WLQRD G+Y+ +FDT A + L
Sbjct: 276 LKPWRQDLQVLNEVFTDPKILKVLHGAFMDILWLQRDLGLYIVGLFDTNHACKALGYAGG 335
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL +LL F +A+K+YQ ADWR+RPLP+ M YAR DTH+LLYIYD M+ +L K
Sbjct: 336 SLAFLLKKFIDFDADKKYQMADWRIRPLPEGMFFYARADTHFLLYIYDNMRNELVERSKP 395
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQGAGLNAQQLAVVAG 358
+ L V ++S + Y+ + + + + LN +Q AV
Sbjct: 396 VPAEENRLEIVLRKSKETSLFRYDSPRYNATTGKGPGGWFQALVKVPSLLNNEQFAVFRA 455
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 418
+ WRD IAR DD+ST +V+ N TL+ +AK +PT A L + ++ G +L +
Sbjct: 456 VHAWRDKIARQDDDSTNFVMANHTLLSVAKVMPTDMASLLGTVHPISYNVKARTGELLEL 515
Query: 419 IKNSMQNAANFEVIAQKLK 437
IK + NA + +A+ LK
Sbjct: 516 IKAAKTNAKDGPSMAEVLK 534
>gi|71657562|ref|XP_817295.1| ribosomal RNA processing protein 6 [Trypanosoma cruzi strain CL
Brener]
gi|70882476|gb|EAN95444.1| ribosomal RNA processing protein 6, putative [Trypanosoma cruzi]
Length = 768
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 213/372 (57%), Gaps = 14/372 (3%)
Query: 64 TITKPQEEYKIVVNNANQPFQHVWL-QKSE-DSGR-FIHP----LDNLSVLDFVDKDIGD 116
+ +PQ ++ V+N+ PF V+ +K E G+ IHP + N+S+ + ++ I
Sbjct: 198 CVLRPQLTFEHPVDNSPTPFCPVYYDEKGERHVGQPGIHPFAELIKNMSMPE--EQLIRR 255
Query: 117 VEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTR 176
VE P L Q P + V+ DL+++ A L E AVDLEH+ + S+ G TCLMQISTR
Sbjct: 256 VETPYLP-LAQCPLRFVDATVDLEDVVALLLKEKEIAVDLEHHSFYSYQGFTCLMQISTR 314
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
+ED ++D LKLR + L VF +P KV+HGA DI WLQ+DFG+YL N FDTG A
Sbjct: 315 SEDILIDCLKLRSSMH-LLAPVFLNPNILKVLHGAREDIRWLQKDFGLYLVNFFDTGIAL 373
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296
+ L + + L + + HFC V +K+YQ ADWR+RP+P EM YAR+DTH+LLY+YD +K
Sbjct: 374 QTLHMP-HGLAFAVDHFCQVKLDKKYQTADWRIRPIPAEMATYARQDTHFLLYVYDRLKT 432
Query: 297 KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQQLAV 355
L + + + L V S + ++YEK +L + SY G GL++ Q+ V
Sbjct: 433 LLLNSEGRASIGNL-LVHVLNESRRLSLEIYEKPQLDPDASYKIALGRSLGGLSSMQMKV 491
Query: 356 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPV 415
+ WRD IAR D+S VL ++ IA +LPT+A + + + + +
Sbjct: 492 AREIFNWRDAIAREVDDSPPAVLHLSAVLAIATKLPTSANDVLKCCTPVSMVVRTNVTRL 551
Query: 416 LSIIKNSMQNAA 427
+ I+K+S+ + A
Sbjct: 552 VQIVKDSLGDDA 563
>gi|367031894|ref|XP_003665230.1| hypothetical protein MYCTH_2308740 [Myceliophthora thermophila ATCC
42464]
gi|347012501|gb|AEO59985.1| hypothetical protein MYCTH_2308740 [Myceliophthora thermophila ATCC
42464]
Length = 860
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 134/398 (33%), Positives = 214/398 (53%), Gaps = 24/398 (6%)
Query: 65 ITKPQEEYKIVVNN----------ANQPFQHVWLQKSEDS-----GR--FIHPLDN-LSV 106
I KPQ ++ ++N ++P V L+ S D+ GR + HP + ++
Sbjct: 144 ILKPQNAFERKIDNFDSGPWKPLMTSKPHARVPLETSLDTFVDEEGRTQYKHPYEQEITN 203
Query: 107 LDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLG 166
+ + ++ E +K +E T V+ + + E+ +LK E AVDLEH+ +R++ G
Sbjct: 204 MQYPEQVYRSCEPIKYLPMETTKAIWVDTYEGVLEMLQELKQATEIAVDLEHHDFRTYAG 263
Query: 167 LTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYL 226
L LMQISTR +D++VDTL L EVF DP KV+HGA D++WLQRD G+Y+
Sbjct: 264 LLSLMQISTREKDWIVDTLVPWRHKLEVLNEVFADPKIVKVLHGAFMDVIWLQRDLGLYI 323
Query: 227 CNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHY 286
+FDT AS L SL +LL F +A+K+YQ ADWR+RPLP+EM YAR DTH+
Sbjct: 324 VGLFDTFYASDTLGYAGKSLAFLLKKFADFDADKKYQLADWRIRPLPEEMFYYARSDTHF 383
Query: 287 LLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 346
LLYIYD+++ +L+ + ++ P+ V ++S +V Q YE + + G
Sbjct: 384 LLYIYDMLRNELAELASQNNPDGNPIDRVIQKSKEVSLQRYEHPVCDPETGAGNRGWYNT 443
Query: 347 GL------NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ N +Q AV + +WRD +AR +DES +++ + L +IA+ +PT L L
Sbjct: 444 LIKSPTLYNGEQFAVYKAVHKWRDDVARQEDESPFFIMTQQVLSDIARIIPTDMKALWSL 503
Query: 401 LKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKE 438
L+S ++ + + +I+ + N + Q +E
Sbjct: 504 LESNARGLKGRLEELFQVIQEARARGVNGPTMLQFFRE 541
>gi|393910372|gb|EFO27811.2| 3'-5' exonuclease [Loa loa]
Length = 844
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 128/279 (45%), Positives = 169/279 (60%), Gaps = 9/279 (3%)
Query: 114 IGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQI 173
+G V+++K +L T V+ V+ L+ L L EF+VDLEHN RSFLGLTCLMQI
Sbjct: 249 VGMVQSLK--ALSDTELVYVDTVEKLRNLRDILNKEQEFSVDLEHNAQRSFLGLTCLMQI 306
Query: 174 STRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG 233
STR D+++D L + L E F DP KV HGAD DIVWLQRDFGIY+ NMFDT
Sbjct: 307 STRQTDYIIDPFPLWNDMH-ILNEPFTDPNILKVFHGADSDIVWLQRDFGIYVVNMFDTY 365
Query: 234 QASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDI 293
+A RVL + S ++L+ C +K++Q ADWR+RPL YAR DTHYLL+ YD
Sbjct: 366 KAMRVLNYSKFSYQHLVQTCCNHTLDKKFQKADWRLRPLTGAHKTYARSDTHYLLHCYDQ 425
Query: 294 MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQ 352
++IKL + + + L VY S C +Y+K + + Y + L G LN++Q
Sbjct: 426 LRIKLLD---QGDAAGNLLEYVYNESAQTCLTVYKKPVFESDGYEKL--LVGRKPLNSRQ 480
Query: 353 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+A L +WRD ARADDES YVLP L++IA+ LP
Sbjct: 481 QFALAALWKWRDERARADDESPQYVLPCHMLLQIAEVLP 519
>gi|452978276|gb|EME78040.1| hypothetical protein MYCFIDRAFT_107101, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 799
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 123/285 (43%), Positives = 164/285 (57%), Gaps = 10/285 (3%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
E T LV+ L + +LK E A+DLEH+ R+++G+ LMQISTR +D++VDT
Sbjct: 224 FETTTATLVDSEVALDAMLKELKQAKEIAIDLEHHDIRTYIGIVSLMQISTRDKDWIVDT 283
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LK + L EVF DP KV+HGA DI+WLQRD G+YL +FDT A+R L
Sbjct: 284 LKPWRRKLQCLNEVFADPNILKVLHGAYMDIIWLQRDLGLYLVGLFDTHHAARALGYPAG 343
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK---IKLSSM 301
SL YLL F GV+A K+YQ ADWRVRPLP + YAR DTHYLLYI+D ++ I+ S
Sbjct: 344 SLAYLLKRFAGVDAQKKYQTADWRVRPLPQALFDYARSDTHYLLYIFDNLRNELIQRSDF 403
Query: 302 PKESENSDTPLTEVYKRSYDVCRQLYEKELLS-EN-----SYLHIYGLQGAGLNAQQLAV 355
+ D L +V +S + Q YE + EN + + A L +Q +V
Sbjct: 404 GLPNHEGDK-LWDVLTKSSETALQRYEHPIYDVENGQGSFGWYKLLAKTSAMLTKEQFSV 462
Query: 356 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ +WRD +AR D+ST +V+PN L IAK +PTT L L
Sbjct: 463 FRAVHQWRDEVAREQDDSTNFVMPNWQLFNIAKSMPTTRQALFSL 507
>gi|346973710|gb|EGY17162.1| hypothetical protein VDAG_00844 [Verticillium dahliae VdLs.17]
Length = 804
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 135/375 (36%), Positives = 198/375 (52%), Gaps = 20/375 (5%)
Query: 65 ITKPQEEYKIVVNN------------ANQPFQHVWLQKSEDSGRFIHPLD-NLSVLDFVD 111
+ KPQ E++ ++N A+ P + Q S +SG HP + + + +
Sbjct: 140 MAKPQLEFERAIDNTSWKPVLSKKPNASVPLEESLAQDSAESGS-KHPYEAEILAASYPE 198
Query: 112 KDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLM 171
+ E + ++ T K V+ + + E+ +LK E AVDLEH+ R++ GL LM
Sbjct: 199 RVYQKAEPILYHPVKSTTAKWVDTYEGVLEMLGELKKAKEIAVDLEHHDTRTYAGLLSLM 258
Query: 172 QISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 231
QISTR +D++VDTLK L EVF DP KV HGA D+ WLQRD G+Y+ +FD
Sbjct: 259 QISTRDQDWIVDTLKPWRHQLEVLNEVFTDPKIVKVFHGAHMDMQWLQRDLGLYINGLFD 318
Query: 232 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 291
T A+ +L + SL YLL F +A+K+YQ ADWR+RPLP+EM YAR DTHYLLYI+
Sbjct: 319 TFFAAEILGYPQRSLAYLLKRFVDFDADKKYQMADWRIRPLPEEMFYYARSDTHYLLYIF 378
Query: 292 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA----- 346
D ++ +L S+ + +V ++S ++ YE + G G
Sbjct: 379 DRIRNELLDASDRSKPETDIIQQVLQKSKELSLSRYEGLDFDPETGHGSRGWYGVLLKNP 438
Query: 347 -GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 405
L+ +Q A + +WRD AR DESTGYVLPN + EIA+ +P A L L+
Sbjct: 439 MPLSGKQFAAYRAIWKWRDDTARRLDESTGYVLPNAAIAEIARHMPPDAKALHSLIHGNS 498
Query: 406 SYIERYMGPVLSIIK 420
+R +G + + K
Sbjct: 499 IIAKRNVGEIWAAFK 513
>gi|312066427|ref|XP_003136265.1| 3'-5' exonuclease [Loa loa]
Length = 845
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 128/279 (45%), Positives = 169/279 (60%), Gaps = 9/279 (3%)
Query: 114 IGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQI 173
+G V+++K +L T V+ V+ L+ L L EF+VDLEHN RSFLGLTCLMQI
Sbjct: 249 VGMVQSLK--ALSDTELVYVDTVEKLRNLRDILNKEQEFSVDLEHNAQRSFLGLTCLMQI 306
Query: 174 STRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG 233
STR D+++D L + L E F DP KV HGAD DIVWLQRDFGIY+ NMFDT
Sbjct: 307 STRQTDYIIDPFPLWNDMH-ILNEPFTDPNILKVFHGADSDIVWLQRDFGIYVVNMFDTY 365
Query: 234 QASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDI 293
+A RVL + S ++L+ C +K++Q ADWR+RPL YAR DTHYLL+ YD
Sbjct: 366 KAMRVLNYSKFSYQHLVQTCCNHTLDKKFQKADWRLRPLTGAHKTYARSDTHYLLHCYDQ 425
Query: 294 MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQ 352
++IKL + + + L VY S C +Y+K + + Y + L G LN++Q
Sbjct: 426 LRIKLLD---QGDAAGNLLEYVYNESAQTCLTVYKKPVFESDGYEKL--LVGRKPLNSRQ 480
Query: 353 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+A L +WRD ARADDES YVLP L++IA+ LP
Sbjct: 481 QFALAALWKWRDERARADDESPQYVLPCHMLLQIAEVLP 519
>gi|347827584|emb|CCD43281.1| hypothetical protein [Botryotinia fuckeliana]
Length = 823
Score = 229 bits (583), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 127/348 (36%), Positives = 196/348 (56%), Gaps = 12/348 (3%)
Query: 93 DSGRFIHPLDN-LSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDE 151
D ++ HP + + L + E +K +E T V+ + + E+ +LK E
Sbjct: 185 DQKQYKHPYETEILQLQYPSAMYEKAEPIKYLPVESTSATFVDTYEGVLEMLEELKGATE 244
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
AVDLEH+ RS++GL LMQ+STR +D++VDTLK Q L EVF DP KV HGA
Sbjct: 245 IAVDLEHHDTRSYVGLVSLMQVSTREKDWIVDTLKPWRQQLQVLNEVFADPNIIKVFHGA 304
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRP 271
DIVWLQRD G+Y+ +FDT A R L SL +LL + +A+K+YQ ADWR+RP
Sbjct: 305 YMDIVWLQRDLGLYVVGLFDTHYACRRLGFAGGSLAFLLKKYIDFDADKKYQLADWRIRP 364
Query: 272 LPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK-ESENSDTP----LTEVYKRSYDVCRQL 326
LP+EM YAR DTH+LLYI+D ++ +L P E+ +++TP + V ++S +
Sbjct: 365 LPEEMFFYARADTHFLLYIFDNLRNELLDAPDVETPDAETPAATSMDIVLQKSKETSLLR 424
Query: 327 YEKELLSENS------YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 380
YE++L + S + + A L+++Q +V + WRD IAR DD+S +V+ N
Sbjct: 425 YERQLYNAESGKGPGGWFSLIYKTPALLSSEQFSVFKAVHAWRDQIARKDDDSINFVMSN 484
Query: 381 RTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 428
++ +AK +P L +++ ++ G +L +IK + +N +
Sbjct: 485 SVVVNLAKFMPMDMIALLSIIRPISHSVKSRTGELLEVIKAAKENGKD 532
>gi|154301232|ref|XP_001551029.1| hypothetical protein BC1G_10286 [Botryotinia fuckeliana B05.10]
Length = 823
Score = 228 bits (582), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 127/348 (36%), Positives = 196/348 (56%), Gaps = 12/348 (3%)
Query: 93 DSGRFIHPLDN-LSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDE 151
D ++ HP + + L + E +K +E T V+ + + E+ +LK E
Sbjct: 185 DQKQYKHPYETEILQLQYPSAMYEKAEPIKYLPVESTSATFVDTYEGVLEMLEELKGATE 244
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
AVDLEH+ RS++GL LMQ+STR +D++VDTLK Q L EVF DP KV HGA
Sbjct: 245 IAVDLEHHDTRSYVGLVSLMQVSTREKDWIVDTLKPWRQQLQVLNEVFADPNIIKVFHGA 304
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRP 271
DIVWLQRD G+Y+ +FDT A R L SL +LL + +A+K+YQ ADWR+RP
Sbjct: 305 YMDIVWLQRDLGLYVVGLFDTHYACRRLGFAGGSLAFLLKKYIDFDADKKYQLADWRIRP 364
Query: 272 LPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK-ESENSDTP----LTEVYKRSYDVCRQL 326
LP+EM YAR DTH+LLYI+D ++ +L P E+ +++TP + V ++S +
Sbjct: 365 LPEEMFFYARADTHFLLYIFDNLRNELLDAPDVETPDAETPAATSMDIVLQKSKETSLLR 424
Query: 327 YEKELLSENS------YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 380
YE++L + S + + A L+++Q +V + WRD IAR DD+S +V+ N
Sbjct: 425 YERQLYNAESGKGPGGWFSLIYKTPALLSSEQFSVFKAVHAWRDQIARKDDDSINFVMSN 484
Query: 381 RTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 428
++ +AK +P L +++ ++ G +L +IK + +N +
Sbjct: 485 SVVVNLAKFMPMDMIALLSIIRPISHSVKSRTGELLEVIKAAKENGKD 532
>gi|353243741|emb|CCA75245.1| related to nucleolar 100K polymyositis-scleroderma protein
[Piriformospora indica DSM 11827]
Length = 847
Score = 228 bits (582), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 167/529 (31%), Positives = 250/529 (47%), Gaps = 73/529 (13%)
Query: 30 GKNKKKGDIVGGSAPASVKVKDRKEKSKVP---FHVPTITKPQEEYKIVVNNAN-----Q 81
G+ K + D+ P K K + + +++P H + KPQ + VNN+N
Sbjct: 131 GRVKARADV-----PVVKKEKSKPDTTRLPANVLHANNLVKPQTRFIEPVNNSNDLVWRH 185
Query: 82 PFQHVWLQKSEDSGR---FIHP-LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVK 137
Q W S R HP ++ L + P S + TPF VE +
Sbjct: 186 TLQQKWHAAQIGSSRPPSSAHPYFKEITSLSHPPSMFLSRPPIPPKSFDDTPFTFVESLN 245
Query: 138 DLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG-PYLR 196
L L +LK +E A+DLE++ YRS+ G CLMQ+S R +D+VVD L ++ L
Sbjct: 246 GLHSLLDQLKQSEEIAIDLEYHSYRSYYGFVCLMQVSNRQQDWVVDCLVPEIRANLEILN 305
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGV 256
EVF DP KV+HGA+ DIVWLQ +F +Y+ N+FDT ASR L+L R+SL +LL +C
Sbjct: 306 EVFTDPNIVKVLHGAESDIVWLQENFHLYIVNLFDTFHASRALELPRHSLAFLLSAYCDF 365
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE-- 314
A+K YQ ADWR+RPLP EML YAR DTH+LL+IYD ++ ++ ++ +N TP E
Sbjct: 366 TADKRYQLADWRIRPLPAEMLHYARSDTHFLLFIYDQLR---EALLEKGKNPSTPPAEDA 422
Query: 315 ---------VYKRSYDVCRQLYEKELLSEN-SYLHIYGLQG-AGL----NAQQLAV---- 355
+R Q +E + E + G++G AGL N + L V
Sbjct: 423 PPLSDPQLRYIRRVLSNSAQTSLREFVRERYDAVEGTGMRGWAGLLKKWNRRSLLVPGVE 482
Query: 356 ---VAGLCEWRDVIARADDESTGYVLPNRTLIEIA-KQLPTTAAKLRRLLKSKHSYIERY 411
+ WRD +AR +DES +V+ N+ L+ + K +P L +
Sbjct: 483 RNIFLAVHAWRDRVAREEDESPVFVISNQLLLSLMEKPVPVNLTAL----------FASF 532
Query: 412 MGPVLSIIKNS-------MQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSN---LKI 461
G V S+I+ MQ+AA + A K ME E + ++ D ++N +
Sbjct: 533 PGSVPSLIRKRGAELLKVMQDAAVAPIDAAK-----MEPMLLEEDAIIFDATANAITTDL 587
Query: 462 PNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGS 510
P+ + +VG P P + + G + + D G G+
Sbjct: 588 PSHTLPPSQSIVPVVGLWEPTKPPI--IAKRSTLFGGKLGDTDSQGAGA 634
>gi|326477901|gb|EGE01911.1| exosome complex exonuclease Rrp6 [Trichophyton equinum CBS 127.97]
Length = 824
Score = 228 bits (582), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 119/305 (39%), Positives = 172/305 (56%), Gaps = 9/305 (2%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
VE ++D+ + ++LK +E AVDLEH+ + GL CLMQISTR +D++VDTLK
Sbjct: 245 FVETLEDVHAMLSQLKQAEEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQ 304
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLH 251
L EVF DP+ KV+HG+ D++WLQRD G+YL +FDT A+ L+L + SL++LLH
Sbjct: 305 LQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASALQLPKKSLKFLLH 364
Query: 252 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENS 308
+ G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI+D ++ +L +P ES
Sbjct: 365 EYVGFDADKQYQTADWRIRPLLAGMLDYARSDTHFLLYIFDRLRNQLLDLPSESGFGAGG 424
Query: 309 DTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGLQGAGLNAQQLAVVAGLCEW 362
+ V +RS + Q YE+ + + L +Q AV L EW
Sbjct: 425 REAIEYVLERSKECALQRYERPTYDAATGRGSGGWHDMLSNSPVALTREQFAVFRALHEW 484
Query: 363 RDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
RD ARADDES VL R L +A+++P + R+ + + V +I+ +
Sbjct: 485 RDKTARADDESPQTVLSKRALFRLAQEMPEDKFAVLRMGSPVSASLRSRTDEVAGLIREA 544
Query: 423 MQNAA 427
Q
Sbjct: 545 RQQGG 549
>gi|302415657|ref|XP_003005660.1| 3'-5' exonuclease domain-containing protein [Verticillium
albo-atrum VaMs.102]
gi|261355076|gb|EEY17504.1| 3'-5' exonuclease domain-containing protein [Verticillium
albo-atrum VaMs.102]
Length = 894
Score = 228 bits (582), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 135/375 (36%), Positives = 200/375 (53%), Gaps = 20/375 (5%)
Query: 65 ITKPQEEYKIVVNN------------ANQPFQHVWLQKSEDSGRFIHPLDN-LSVLDFVD 111
+ KPQ E++ ++N A+ P + + S DSG HP + + ++ +
Sbjct: 191 MAKPQLEFERAIDNTSWKPVLSKKPNASVPLEESLARDSADSGS-KHPYETEILAANYPE 249
Query: 112 KDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLM 171
+ E + ++ T K V+ + + E+ +LK E AVDLEH+ R++ GL LM
Sbjct: 250 QVYQKAEPILYHPVKSTTAKWVDTYEGVLEMLGELKKAKEIAVDLEHHDTRTYAGLLSLM 309
Query: 172 QISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 231
QISTR +D++VDTLK L EVF +P KV HGA D+ WLQRD G+Y+ +FD
Sbjct: 310 QISTRDQDWIVDTLKPWRHQLEVLNEVFTNPKIVKVFHGAHMDMQWLQRDLGLYINGLFD 369
Query: 232 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 291
T A+ +L + SL YLL F +A+K+YQ ADWR+RPLP+EM YAR DTHYLLYI+
Sbjct: 370 TFFAAEILGYPQRSLAYLLKRFVDFDADKKYQMADWRIRPLPEEMFYYARSDTHYLLYIF 429
Query: 292 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA----- 346
D ++ +L S+ + +V ++S ++ YE + G G
Sbjct: 430 DRIRNELLDASDRSKPETDIIQQVLQKSKELSLSRYEGLDFDPETGHGSRGWYGVLLKNP 489
Query: 347 -GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 405
L+ +Q A + +WRD AR DESTGYVLPN + EIA+ +P A L L+ S
Sbjct: 490 MPLSGKQFAAYRAIWKWRDDTARRLDESTGYVLPNAAIAEIARHMPPDAKALHSLIHSNS 549
Query: 406 SYIERYMGPVLSIIK 420
+R +G + + K
Sbjct: 550 IIAKRNVGEIWAAFK 564
>gi|402589191|gb|EJW83123.1| 3'-5' exonuclease [Wuchereria bancrofti]
Length = 822
Score = 228 bits (582), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 130/280 (46%), Positives = 167/280 (59%), Gaps = 11/280 (3%)
Query: 114 IGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQI 173
IG VE +KP L T V+ V+ L+ L L EF+VDLEHN +RSFLGLTCLMQI
Sbjct: 252 IGVVEPLKP--LSDTELVYVDTVEKLRNLRDVLNKEQEFSVDLEHNAHRSFLGLTCLMQI 309
Query: 174 STRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG 233
STR D+++D L + L E F DP KV HGAD DIVWLQRDFGIY+ NMFDT
Sbjct: 310 STRQMDYIIDPFPLWNDMH-ILNEPFTDPNILKVFHGADSDIVWLQRDFGIYVVNMFDTY 368
Query: 234 QASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDI 293
+A RVL + S ++L+ C +K++Q ADWR+RPL YAR DTHYLL+ YD
Sbjct: 369 KAMRVLNFSKFSYQHLVQTCCNHTLDKKFQKADWRLRPLTVAHKTYARSDTHYLLHCYDQ 428
Query: 294 MKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQ 351
++ +L EN+ L E VY S C +Y+K + Y + L G LN++
Sbjct: 429 LRKRLLG----QENAANNLLEFVYNESAQTCLNVYKKPTFESDGYEKL--LVGRKPLNSR 482
Query: 352 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
Q +A L +WRD AR DDES YVLP +++IA+ LP
Sbjct: 483 QQFALAALWKWRDERARTDDESPQYVLPCHMMLQIAEVLP 522
>gi|302501205|ref|XP_003012595.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae
CBS 112371]
gi|291176154|gb|EFE31955.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae
CBS 112371]
Length = 1069
Score = 228 bits (582), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 116/274 (42%), Positives = 163/274 (59%), Gaps = 14/274 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
VE ++D+ + ++LK E AVDLEH+ + GL CLMQISTR +D++VDTLK
Sbjct: 432 FVETLEDVHAMLSQLKQAKEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQ 491
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLH 251
L EVF DP+ KV+HG+ D++WLQRD G+YL +FDT A+ L+L + SL++LLH
Sbjct: 492 LQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASALQLPKKSLKFLLH 551
Query: 252 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT- 310
+ G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI+D ++ +L +P SE ++
Sbjct: 552 EYVGFDADKQYQTADWRIRPLLAGMLDYARSDTHFLLYIFDRLRNQLLELPPSSEEKESG 611
Query: 311 -------PLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGLQGAGLNAQQLAVVA 357
+ V +RS + Q YE+ + + L +Q AV
Sbjct: 612 PGGGGREAIEYVLERSKECALQRYERPTYDAATGRGSGGWHDMLSNSPVALTREQFAVFR 671
Query: 358 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
L EWRD IARADDES VL R L +A+++P
Sbjct: 672 ALHEWRDRIARADDESPQTVLSKRALFRLAQEMP 705
>gi|72387778|ref|XP_844313.1| ribosomal RNA processing protein 6 [Trypanosoma brucei TREU927]
gi|62359465|gb|AAX79902.1| ribosomal RNA processing protein 6 [Trypanosoma brucei]
gi|70800846|gb|AAZ10754.1| ribosomal RNA processing protein 6 [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 736
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 211/371 (56%), Gaps = 14/371 (3%)
Query: 64 TITKPQEEYKIVVNNANQPFQHVW-----LQKSEDSGRFIHPL-DNLSVLDFVDKDIGDV 117
++ +PQ ++ V+N+ PF+ V+ ++ + G +HP + + + + +
Sbjct: 176 SVLRPQLTFEHPVDNSPTPFRPVYYDEKGVRHVGEPG--VHPFAERIKAVSVPSEQLLLK 233
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRT 177
SL P V+ V+DL+ L A L + E AVDLEH+ + S+ G TCLMQISTRT
Sbjct: 234 TETPYLSLVTCPLTFVDTVEDLEALVAVLLNETEIAVDLEHHDFYSYQGFTCLMQISTRT 293
Query: 178 EDFVVDTLKLRVQVGPYLRE-VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
+DF+VD LK+R + YL VF P KV HGA D+ WLQ+DFG+Y+ N+FDT A
Sbjct: 294 QDFIVDCLKVRANM--YLMAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNLFDTSIAL 351
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296
+ L + +SL + + HFC V NK+YQ ADWRVRP+P EM+ YA++DTH+LLY+YD +K
Sbjct: 352 QNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLYVYDRLKQ 410
Query: 297 KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN-SYLHIYGLQGAGLNAQQLAV 355
L + + + L V++ S + + YEK L + +Y G GL++ QL V
Sbjct: 411 LLLNCEARASVGNM-LLHVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGLSSSQLQV 469
Query: 356 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPV 415
+ WRD+ AR D+S V+ ++ IA +LPT+A ++ + + + +
Sbjct: 470 AREIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVAVRTNVMKL 529
Query: 416 LSIIKNSMQNA 426
L I+K+++ +A
Sbjct: 530 LQIVKDAIGSA 540
>gi|14250912|emb|CAC39261.1| Rrp6p homologue [Trypanosoma brucei]
Length = 703
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 211/371 (56%), Gaps = 14/371 (3%)
Query: 64 TITKPQEEYKIVVNNANQPFQHVW-----LQKSEDSGRFIHPL-DNLSVLDFVDKDIGDV 117
++ +PQ ++ V+N+ PF+ V+ ++ + G +HP + + + + +
Sbjct: 143 SVLRPQLTFEHPVDNSPTPFRPVYYDEKGVRHVGEPG--VHPFAERIKAVSVPSEQLLLK 200
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRT 177
SL P V+ V+DL+ L A L + E AVDLEH+ + S+ G TCLMQISTRT
Sbjct: 201 TETPYLSLVTCPLTFVDTVEDLEALVAVLLNETEIAVDLEHHDFYSYQGFTCLMQISTRT 260
Query: 178 EDFVVDTLKLRVQVGPYLRE-VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
+DF+VD LK+R + YL VF P KV HGA D+ WLQ+DFG+Y+ N+FDT A
Sbjct: 261 QDFIVDCLKVRANM--YLMAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNLFDTSIAL 318
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296
+ L + +SL + + HFC V NK+YQ ADWRVRP+P EM+ YA++DTH+LLY+YD +K
Sbjct: 319 QNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLYVYDRLKQ 377
Query: 297 KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN-SYLHIYGLQGAGLNAQQLAV 355
L + + + L V++ S + + YEK L + +Y G GL++ QL V
Sbjct: 378 LLLNCEARASVGNM-LLHVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGLSSPQLQV 436
Query: 356 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPV 415
+ WRD+ AR D+S V+ ++ IA +LPT+A ++ + + + +
Sbjct: 437 AREIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVAVRTNVMKL 496
Query: 416 LSIIKNSMQNA 426
L I+K+++ +A
Sbjct: 497 LQIVKDAIGSA 507
>gi|240254568|ref|NP_850189.5| RRP6-like protein 3 [Arabidopsis thaliana]
gi|330253588|gb|AEC08682.1| RRP6-like protein 3 [Arabidopsis thaliana]
Length = 891
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/289 (46%), Positives = 166/289 (57%), Gaps = 18/289 (6%)
Query: 124 SLEQT-PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVV 182
SLE + + VE LKELA L FAVD E + RSFLG T L+QIST EDF+V
Sbjct: 112 SLEMSDSYVWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLV 171
Query: 183 DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE 242
DT+ L V LR VF DP KV HGAD D++WLQRDF IY+ NMFDT +A VL
Sbjct: 172 DTIALH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKP 230
Query: 243 RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 302
+ SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI D + +L +
Sbjct: 231 QRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLA 290
Query: 303 KESENSDTP---LTEVYKRSYDVCRQLYEKEL--------LSENSYLHIYGL---QGAGL 348
+S + D L E +RS C QLY KE S Y H+ G L
Sbjct: 291 TDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNISL 350
Query: 349 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
NA++L V LC WRD++ R DEST YVL ++ ++ ++ + PTT ++
Sbjct: 351 NAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEI 397
>gi|334184634|ref|NP_001189656.1| RRP6-like protein 3 [Arabidopsis thaliana]
gi|330253589|gb|AEC08683.1| RRP6-like protein 3 [Arabidopsis thaliana]
Length = 872
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/289 (46%), Positives = 166/289 (57%), Gaps = 18/289 (6%)
Query: 124 SLEQT-PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVV 182
SLE + + VE LKELA L FAVD E + RSFLG T L+QIST EDF+V
Sbjct: 112 SLEMSDSYVWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLV 171
Query: 183 DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE 242
DT+ L V LR VF DP KV HGAD D++WLQRDF IY+ NMFDT +A VL
Sbjct: 172 DTIALH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKP 230
Query: 243 RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 302
+ SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI D + +L +
Sbjct: 231 QRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLA 290
Query: 303 KESENSDTP---LTEVYKRSYDVCRQLYEKEL--------LSENSYLHIYGL---QGAGL 348
+S + D L E +RS C QLY KE S Y H+ G L
Sbjct: 291 TDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNISL 350
Query: 349 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
NA++L V LC WRD++ R DEST YVL ++ ++ ++ + PTT ++
Sbjct: 351 NAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEI 397
>gi|340518928|gb|EGR49168.1| predicted protein [Trichoderma reesei QM6a]
Length = 818
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 206/387 (53%), Gaps = 26/387 (6%)
Query: 40 GGSAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNN----------ANQPFQHVWLQ 89
G + ++ K K K SKV + KPQ +++I NN +P V L+
Sbjct: 116 NGDSDSNSKTKQAKSTSKV-IRNANVKKPQLDFEIPPNNFPDGPWKPLLTEKPHAKVPLE 174
Query: 90 KS-----EDSG--RFIHPLD-NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKE 141
S D+G ++ HP + + + + D+ ++ + P +E T V+ + + E
Sbjct: 175 DSLVTFVGDNGTTQYKHPYEPEILSMQYPDRVFQVLDPIPPQPVETTSATWVDTYEGVLE 234
Query: 142 LAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKD 201
+ +LK E AVDLEH+ +R+++GL L+QISTR +D++VDTLK L EVF D
Sbjct: 235 MLQELKQAKEIAVDLEHHDFRTYIGLVSLLQISTREKDWIVDTLKPWRHKLQVLNEVFAD 294
Query: 202 PTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKE 261
PT KV HGA D+VWLQRD G+Y+ +FDT AS L SL +LL F +A+K
Sbjct: 295 PTIVKVFHGAYMDMVWLQRDLGLYVNGLFDTFFASDALHYSSRSLAFLLSKFVNFDADKR 354
Query: 262 YQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYD 321
YQ ADWR+RP+P+EML YAR DTH+LLYIYD ++ L + S + V ++S +
Sbjct: 355 YQLADWRIRPIPEEMLFYARSDTHFLLYIYDKIRNDLVQVSDRSNPDKDLIGRVLEKSRE 414
Query: 322 VCRQLYEKELLSENS-------YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 374
+ +E +E + Y + G ++Q AV L +WRDV AR +DE+
Sbjct: 415 LSLSRHEHPEFNEETGEGSRGWYNFVLKNSHLGYKSEQFAVFRALWKWRDVTARTEDENP 474
Query: 375 GYVLPNRTLIEIAKQLPTTAAKLRRLL 401
+VL L++IA+ P A L LL
Sbjct: 475 NFVLGTNNLVDIARANPPDAKALHSLL 501
>gi|406606562|emb|CCH42061.1| exosome complex exonuclease [Wickerhamomyces ciferrii]
Length = 744
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 147/399 (36%), Positives = 214/399 (53%), Gaps = 39/399 (9%)
Query: 52 RKEKSKVPFHVPTITKPQEEYKIVVN---NANQPFQHVWLQKSE---DSGRFIHPLDNLS 105
R+EK + F P +K ++ NA PFQ ++ +E D + P + +
Sbjct: 132 RQEKPQKFFKTPIDNSESHPFKPLLKEKPNAMVPFQETFILTTEEENDPAHYKQPYE-IE 190
Query: 106 VLD--FVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRS 163
+L+ + K + + + + T V+ +++L ++ L+SV E AVDLEH+ YRS
Sbjct: 191 ILNQEYNSKILEKSDPIPSKDWQGTEPIWVDTIEELNKMHKDLQSVSEIAVDLEHHDYRS 250
Query: 164 FLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFG 223
+ GL CLMQISTR +D+++DTL LR + L VF DP KV HGA DI+WLQRD G
Sbjct: 251 YYGLVCLMQISTRDQDWLIDTLALREDLK-ILNSVFTDPKITKVFHGAFMDIIWLQRDLG 309
Query: 224 IYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARED 283
+Y+ ++FDT ASR L ++SL YLL F +K+YQ ADWR+RPL M YAR D
Sbjct: 310 LYIVSLFDTYHASRQLGFPKHSLAYLLERFAHFKTSKKYQLADWRIRPLTGPMKLYARSD 369
Query: 284 THYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----KELLSEN---- 335
TH+LL I+D +L +M ES LT V S +V R+ +E + L S N
Sbjct: 370 THFLLNIFD----QLRNMLIES----NKLTNVLFESRNVARRRFEYSSFRPLASTNVVSP 421
Query: 336 --------SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 387
S L+ Y L +A + AVV L +WRD IA+ DDES YV+PN+ L+ +A
Sbjct: 422 IEKPEPWKSLLYQYNL-----SASREAVVRSLYQWRDQIAKQDDESPRYVMPNQLLVSLA 476
Query: 388 KQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 426
+PT A + ++ + + +IK SM+ A
Sbjct: 477 SLVPTDPAGVLSSSNLISDHVRKNAKEISELIKRSMKEA 515
>gi|160892403|gb|ABX52081.1| RRP6-like protein 3 [Arabidopsis thaliana]
Length = 892
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/292 (45%), Positives = 168/292 (57%), Gaps = 23/292 (7%)
Query: 124 SLEQT-PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVV 182
SLE + + VE LKELA L FAVD E + RSFLG T L+QIST EDF+V
Sbjct: 112 SLEMSDSYVWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLV 171
Query: 183 DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE 242
DT+ L V LR VF DP KV HGAD D++WLQRDF IY+ NMFDT +A VL
Sbjct: 172 DTIALH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKP 230
Query: 243 RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 302
+ SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI D + +L +
Sbjct: 231 QRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLA 290
Query: 303 KESENSDTP------LTEVYKRSYDVCRQLYEKEL--------LSENSYLHIYGL---QG 345
+E+S +P L E +RS C QLY KE S Y H+ G
Sbjct: 291 --TEDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSN 348
Query: 346 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
LNA++L V LC WRD++ R DEST YVL ++ ++ ++ + PTT ++
Sbjct: 349 ISLNAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEI 398
>gi|156039491|ref|XP_001586853.1| hypothetical protein SS1G_11882 [Sclerotinia sclerotiorum 1980]
gi|154697619|gb|EDN97357.1| hypothetical protein SS1G_11882 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 808
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 177/310 (57%), Gaps = 6/310 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E T V+ + + E+ +LK E AVDLEH+ RS++GL LMQISTR +D++VDT
Sbjct: 218 VESTSATFVDTYEGVLEMLEELKGAKEIAVDLEHHDTRSYVGLVSLMQISTREKDWIVDT 277
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LK Q L EVF DP KV HGA DIVWLQRD G+Y+ +FDT A R L L
Sbjct: 278 LKPWRQQLQVLNEVFADPCIIKVFHGAYMDIVWLQRDLGLYVVGLFDTHYACRRLGLAGG 337
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL +LL + +A+K+YQ ADWR+RPLP+EM YAR DTH+LLYI+D ++ +L
Sbjct: 338 SLAFLLKKYIDFDADKKYQLADWRIRPLPEEMFFYARADTHFLLYIFDNLRNELIDASNT 397
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQGAGLNAQQLAVVAG 358
P+ V ++S + YE+++ + S + + A L+++Q AV
Sbjct: 398 ETPETNPMETVLEKSKETSLLRYERQVYNAESGKGPGGWFSLIYKTPALLSSEQFAVFKA 457
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 418
+ WRD IAR DD+S +V+ N +I +AK +P L +++ ++ +L I
Sbjct: 458 VHAWRDQIARKDDDSINFVMSNSVVINLAKFMPMDMIALLSIIRPISYSVKSRTQELLEI 517
Query: 419 IKNSMQNAAN 428
IK + +N +
Sbjct: 518 IKAAKENGKD 527
>gi|296815198|ref|XP_002847936.1| exosome component 3'-5' exonuclease [Arthroderma otae CBS 113480]
gi|238840961|gb|EEQ30623.1| ribosomal RNA processing 3'-5' exonuclease [Arthroderma otae CBS
113480]
Length = 810
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 124/315 (39%), Positives = 180/315 (57%), Gaps = 21/315 (6%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E T VE ++D+ + A+LK E AVDLEH+ + GL CLMQISTR +D++VDT
Sbjct: 241 VENTKATFVETMEDVHAMLAELKKAKEIAVDLEHHDAHVYHGLVCLMQISTREQDWIVDT 300
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LK L EVF DP+ KV+HG+ D++WLQRD G+YL +FDT A+ +L+L +
Sbjct: 301 LKPWRDQLQVLNEVFADPSIVKVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASMLQLPKK 360
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL + G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI+D ++ +L E
Sbjct: 361 SLKFLLQQYVGFDADKQYQTADWRIRPLLPGMLDYARSDTHFLLYIFDRLRNELI----E 416
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-----------LNAQQL 353
+ D + V +RS + Q YE+ +Y + G G L +Q
Sbjct: 417 ASGRDA-IEYVLERSKECALQRYERP-----TYDSLRGRGNGGWHDMLSNSPVLLTREQF 470
Query: 354 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 413
AV L EWRD AR DDEST VL R+L IA+++P + +L + +
Sbjct: 471 AVFRALHEWRDKTARTDDESTQTVLSKRSLFRIAQEMPVDKFAVLQLASPVSASLRSRTE 530
Query: 414 PVLSIIKNSMQNAAN 428
V ++I + +N++
Sbjct: 531 EVAALIAKAKKNSST 545
>gi|169234702|ref|NP_001108472.1| PM-Scl autoantigen-like protein [Bombyx mori]
gi|18700467|dbj|BAB85201.1| PM-Scl autoantigen-like protein [Bombyx mori]
gi|22474519|dbj|BAC10623.1| PM-Scl autoantigen-like protein [Bombyx mori]
Length = 451
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 115/271 (42%), Positives = 169/271 (62%), Gaps = 11/271 (4%)
Query: 128 TPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSF------LGLTCLMQIST-RTEDF 180
T F ++ L EL L +V++ AVD+EH+ YR LG+TCL+QIST DF
Sbjct: 117 TKFTYIDIESKLDELVEHLMAVEQIAVDVEHHSYRDLSGLYLILGITCLIQISTDEGGDF 176
Query: 181 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 240
++D L +R + L VF DP K KV HGAD D++WLQRDFG+YL +FDT A++ L
Sbjct: 177 IIDALAVREHIHK-LNVVFTDPKKLKVFHGADSDVLWLQRDFGVYLVGLFDTYHAAKSLG 235
Query: 241 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300
L SL++LL +CGV+ +K Y+ ADWR+RPLPD +++YAR DTHYLLY++ +MK +
Sbjct: 236 LPALSLKFLLMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMK---NQ 292
Query: 301 MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 360
+ +++ L V++ S C Y KE++ + S++ +Y + QQ+A + L
Sbjct: 293 IIEKNAGQTNMLLSVFEDSRQTCASTYNKEVIHDESHIPLYIRSKKNFDNQQMAALKMLY 352
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+WRD AR DEST Y+LPN L+ +++ LP
Sbjct: 353 KWRDSQARQLDESTTYLLPNHMLLSLSENLP 383
>gi|340966615|gb|EGS22122.1| exosome complex exonuclease rrp6-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 859
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 176/311 (56%), Gaps = 6/311 (1%)
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRT 177
E +K +E T V+ + + E+ +LK E A+DLEH+ +RS+ GL LMQISTR
Sbjct: 217 EPIKYQPIETTTAIWVDTWEGVLEMLEELKKATEIAIDLEHHDFRSYNGLLSLMQISTRE 276
Query: 178 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 237
+D++VDTL L EVF DP KV+HGA DI+WLQRD G+Y+ +FDT AS
Sbjct: 277 KDWIVDTLVPWRHKLEILNEVFADPKIVKVLHGAFMDIIWLQRDLGLYIVGLFDTYYASD 336
Query: 238 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 297
VL SL YLL F +A+K+YQ ADWR+RPLP+EM YAR DTH+LLYIYD ++ +
Sbjct: 337 VLGYPGKSLAYLLKRFADFDADKKYQLADWRIRPLPEEMFYYARSDTHFLLYIYDHLRNE 396
Query: 298 LSSMPKESENSDTPLTEVYKRSYDVCRQLYE------KELLSENSYLHIYGLQGAGLNAQ 351
L+ + + P+ V KRS + Q YE + + + + A N +
Sbjct: 397 LAELSAANHPDGKPIDRVIKRSKEESLQRYEHLTCDPETGIGARGWFNTLCKSPAAYNRE 456
Query: 352 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 411
Q AV + +WRD +AR +DES Y + + L +IA+ LP+ L LL ++ Y
Sbjct: 457 QFAVYKAVHKWRDDLARREDESPQYFMTQQILADIARILPSDKKALWSLLNHNAGVLKPY 516
Query: 412 MGPVLSIIKNS 422
+ + +I+ +
Sbjct: 517 LDELFDLIQEA 527
>gi|67537662|ref|XP_662605.1| hypothetical protein AN5001.2 [Aspergillus nidulans FGSC A4]
gi|40741889|gb|EAA61079.1| hypothetical protein AN5001.2 [Aspergillus nidulans FGSC A4]
gi|259482125|tpe|CBF76306.1| TPA: exosome complex exonuclease Rrp6, putative (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 1297
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 128/323 (39%), Positives = 178/323 (55%), Gaps = 15/323 (4%)
Query: 117 VEAVKPP----SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQ 172
V V PP E T V+ + +KE+ A+LKS E A+DLEH+ S+ GL LMQ
Sbjct: 213 VYTVSPPIDYLPFETTAATFVDTLDGVKEMLAELKSAREIAIDLEHHDVHSYHGLVSLMQ 272
Query: 173 ISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 232
ISTR +D+VVDTLK + L EVF DP K+ HG+ DI+WLQRD G+Y+ MFDT
Sbjct: 273 ISTREKDWVVDTLKPWREELQMLNEVFADPNILKLFHGSSMDIIWLQRDLGLYVVGMFDT 332
Query: 233 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 292
A+ L + SL+YLLH F A+K+YQ ADWR+RPLP M YAR DTHYLLYIYD
Sbjct: 333 YHAACALNYPKKSLKYLLHKFVNFEADKQYQMADWRIRPLPSGMFNYARSDTHYLLYIYD 392
Query: 293 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQGA 346
++ +L + S D + V ++S Q YE+ + + + + A
Sbjct: 393 NLRNELLT---NSTPEDNLVDYVLEKSKTEALQRYERPVYDAATGQGAGGWYDLMTRSPA 449
Query: 347 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 406
L+++Q AV+ + EWRD +AR +DE V P L +A+ +P L R + S +
Sbjct: 450 ILSSEQFAVLKAVHEWRDRVAREEDEGVQCVFPKHILFRVAQAMPQDLGTLFRTM-SPMT 508
Query: 407 YIERYMGP-VLSIIKNSMQNAAN 428
I + P +L +IK + A
Sbjct: 509 PIAKDRAPDLLQVIKTAKAEGAT 531
>gi|261327471|emb|CBH10446.1| ribosomal RNA processing protein 6, putative [Trypanosoma brucei
gambiense DAL972]
Length = 738
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 211/371 (56%), Gaps = 14/371 (3%)
Query: 64 TITKPQEEYKIVVNNANQPFQHVW-----LQKSEDSGRFIHPL-DNLSVLDFVDKDIGDV 117
++ +PQ ++ V+N+ PF+ V+ ++ + G +HP + + + + +
Sbjct: 176 SVLRPQLTFEHPVDNSPTPFRPVYYDEKGVRHVGEPG--VHPFAERIKAVSVPSEQLLLK 233
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRT 177
SL P V+ V+DL+ + A L + E AVDLEH+ + S+ G TCLMQISTRT
Sbjct: 234 TETPYLSLVTCPLTFVDTVEDLEAVVAVLLNETEIAVDLEHHDFYSYQGFTCLMQISTRT 293
Query: 178 EDFVVDTLKLRVQVGPYLRE-VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
+DF+VD LK+R + YL VF P KV HGA D+ WLQ+DFG+Y+ N+FDT A
Sbjct: 294 QDFIVDCLKVRANM--YLMAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNLFDTSIAL 351
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296
+ L + +SL + + HFC V NK+YQ ADWRVRP+P EM+ YA++DTH+LLY+YD +K
Sbjct: 352 QNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLYVYDRLKQ 410
Query: 297 KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN-SYLHIYGLQGAGLNAQQLAV 355
L + + + L V++ S + + YEK L + +Y G GL++ QL V
Sbjct: 411 LLLNCEARASVGNM-LLHVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGLSSSQLQV 469
Query: 356 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPV 415
+ WRD+ AR D+S V+ ++ IA +LPT+A ++ + + + +
Sbjct: 470 AREIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVAVRTNVMKL 529
Query: 416 LSIIKNSMQNA 426
L I+K+++ +A
Sbjct: 530 LQIVKDAIGSA 540
>gi|327308500|ref|XP_003238941.1| exosome component 3'-5' exonuclease [Trichophyton rubrum CBS
118892]
gi|326459197|gb|EGD84650.1| exosome complex exonuclease Rrp6 [Trichophyton rubrum CBS 118892]
Length = 867
Score = 225 bits (574), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 174/312 (55%), Gaps = 16/312 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
VE ++D+ + ++LK E AVDLEH+ + GL CLMQISTR +D++VDTLK
Sbjct: 245 FVETLEDVHAMLSQLKQAKEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQ 304
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLH 251
L EVF DP+ KV+HG+ D++WLQRD G+YL +FDT A+ L+L + SL++LLH
Sbjct: 305 LQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASALQLPKKSLKFLLH 364
Query: 252 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL----SSMPKESEN 307
+ G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI+D ++ +L SS P+E +
Sbjct: 365 EYVGFDADKQYQTADWRIRPLLAGMLDYARSDTHFLLYIFDRLRNQLLESPSSSPEEKQE 424
Query: 308 SDT------PLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGLQGAGLNAQQLAV 355
S + V +RS + Q YE+ + + L +Q AV
Sbjct: 425 SGLGGGGREAIEYVLERSKECALQRYERPTYDAATGRGSGGWHDMLSNSPVALTREQFAV 484
Query: 356 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPV 415
L EWRD ARADDES VL R L +A+++P + R+ + + V
Sbjct: 485 FRALHEWRDKTARADDESPQTVLSKRALFRLAQEMPEDKFAVLRMGSPVSASLRSRTDEV 544
Query: 416 LSIIKNSMQNAA 427
+I+ + Q
Sbjct: 545 AGLIREARQQGG 556
>gi|345564419|gb|EGX47382.1| hypothetical protein AOL_s00083g475 [Arthrobotrys oligospora ATCC
24927]
Length = 806
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 125/348 (35%), Positives = 191/348 (54%), Gaps = 12/348 (3%)
Query: 96 RFIHP-LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAV 154
++ HP L+ +S F ++ E ++ E T V+ + L E+ +L +E AV
Sbjct: 193 KYPHPYLEEISQYKFPNRVHKVAEPIQYKPFESTSAIFVDSPQRLHEMMQELVKAEEIAV 252
Query: 155 DLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRD 214
DLEH+ +RS++GL CLMQ+STR +D+++DTLKLR ++ L EVF +P KV HGA D
Sbjct: 253 DLEHHDFRSYIGLVCLMQVSTREQDWIIDTLKLRDEL-EVLNEVFANPGIVKVFHGAFMD 311
Query: 215 IVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPD 274
I+WLQRD IY+ +FDT A+R L +SL +LL + +A+K YQ ADWRVRP+P
Sbjct: 312 IIWLQRDLNIYVVGLFDTYDAARSLGFTGHSLAFLLKKYINFDADKSYQLADWRVRPIPQ 371
Query: 275 EMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL-- 332
EML YAR DTH+LL+IYD M+ +L + K + + + V S + C + Y+ E
Sbjct: 372 EMLDYARSDTHFLLFIYDNMRNEL--IGKSNAAEEDKIETVQNNSKETCLKTYDTEPYDP 429
Query: 333 ----SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 388
+L I +Q +V + WRD +AR +D++ +V+ L+ A+
Sbjct: 430 VNGGGSRGWLSILKHNAVNFTDEQFSVFRAVHAWRDRVAREEDDNPHFVMSKNHLLSFAR 489
Query: 389 QLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKL 436
Q+P AA L S + + + ++S IK + N F + L
Sbjct: 490 QMPVDAAAA--LSVSSNPLLRSKLSDLVSTIKEAKANPVPFSSVQHLL 535
>gi|429849634|gb|ELA24996.1| exosome complex exonuclease [Colletotrichum gloeosporioides Nara
gc5]
Length = 908
Score = 225 bits (573), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 131/315 (41%), Positives = 181/315 (57%), Gaps = 11/315 (3%)
Query: 96 RFIHPLDNLSVLD--FVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFA 153
R+ HP + +L+ + D+ E + +++T V+ + + E+ +LK E A
Sbjct: 229 RYKHPYE-AEILEAKYPDRVYQQAEPIPWQPVDKTEATWVDTFEGVLEMLEELKKAKEIA 287
Query: 154 VDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADR 213
VDLEH+ +R+++GLT LMQISTR +D+VVDTLK Q L +VF DP KV HG+
Sbjct: 288 VDLEHHDFRTYVGLTSLMQISTREKDWVVDTLKPWRQQLQVLNQVFADPNIVKVFHGSYM 347
Query: 214 DIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLP 273
DI+WLQRD G+Y+ +FDT A L + SL +LL F +A+K YQ ADWR+RPL
Sbjct: 348 DIIWLQRDLGLYVNGLFDTFYACEALHYPQKSLAFLLSKFANFDADKRYQMADWRMRPLS 407
Query: 274 DEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKEL- 331
EML YAR DTHYLLY+YD ++ +L M + N T E V ++S YE E
Sbjct: 408 PEMLYYARSDTHYLLYVYDKVRNEL-VMKSDRGNPGTNYIETVLQKSKSQSLSRYEGEHF 466
Query: 332 --LSENSYLHIYGL---QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
+S YGL A + QQ AV + WRD +AR +DEST YVLPN + +I
Sbjct: 467 DPVSGKGPKGWYGLLLKHPAPFSGQQFAVYRAVWAWRDEVARREDESTAYVLPNAIIGDI 526
Query: 387 AKQLPTTAAKLRRLL 401
AK++P A L L+
Sbjct: 527 AKRMPPDAKALHALI 541
>gi|336467546|gb|EGO55710.1| hypothetical protein NEUTE1DRAFT_86290 [Neurospora tetrasperma FGSC
2508]
gi|350287803|gb|EGZ69039.1| hypothetical protein NEUTE2DRAFT_115146 [Neurospora tetrasperma
FGSC 2509]
Length = 825
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 131/364 (35%), Positives = 193/364 (53%), Gaps = 13/364 (3%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
++ T V+ + + E+ +LK E A+DLEH+ +RS+ GL LMQISTR +D+V+DT
Sbjct: 223 IDSTSAIWVDTYEGVLEMLEELKQAKEIALDLEHHDFRSYTGLLSLMQISTREKDWVIDT 282
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+ L EVF DP KV+HGA D++WLQRD G+Y+ +FDT A VL
Sbjct: 283 LQPWRHKLEVLNEVFADPNIVKVLHGAFMDVIWLQRDLGLYVVGLFDTYHACAVLGYPGR 342
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL YLL F A+K+YQ ADWR+RPLP+EM YAR DTHYLLYI+D++ +L
Sbjct: 343 SLGYLLSKFAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYIFDMIINELVERSTP 402
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSEN--------SYLHIYGLQGAGLNAQQLAVV 356
+ L +V +RS DV Q YE LS N + ++ N +Q AV
Sbjct: 403 GKPKPDLLEQVLERSKDVALQRYEN--LSYNVETGQGPRGWYNVLLKSPTLYNGEQFAVY 460
Query: 357 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVL 416
+ +WRD +AR +DES + + + L +IA+ LPT L +L S ++ ++ +
Sbjct: 461 KAVHQWRDNLARREDESPFFFMTQQVLADIARILPTDKKALWSILDSNAKGLKSHLDDLF 520
Query: 417 SIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALV 476
+I+ + + N + K E +A + ++ D S IP+V D
Sbjct: 521 DVIQKAKEEGVNGPKMMDIFKSESFVLAPAKIAAVIADDSD---IPDVKELKADRSQFWG 577
Query: 477 GTTM 480
G T+
Sbjct: 578 GVTL 581
>gi|170575788|ref|XP_001893385.1| 3'-5' exonuclease family protein [Brugia malayi]
gi|158600662|gb|EDP37784.1| 3'-5' exonuclease family protein [Brugia malayi]
Length = 847
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/280 (46%), Positives = 167/280 (59%), Gaps = 11/280 (3%)
Query: 114 IGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQI 173
IG VE +K +L T V+ ++ L+ L L EF+VDLEHN RSFLGLTCLMQI
Sbjct: 252 IGVVEPLK--ALSDTELVYVDTLEKLRSLRDVLNKEQEFSVDLEHNAQRSFLGLTCLMQI 309
Query: 174 STRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG 233
STR D+++D L + L E F DP KV HGAD DIVWLQRDFGIY+ NMFDT
Sbjct: 310 STRQMDYIIDPFPLWNDMH-ILNEPFTDPNILKVFHGADSDIVWLQRDFGIYVVNMFDTY 368
Query: 234 QASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDI 293
+A RVL + S ++L+ C +K++Q ADWR+RPL YAR DTHYLL+ YD
Sbjct: 369 KAMRVLNFSKFSYQHLVQTCCNHTLDKKFQKADWRLRPLTIAHKTYARSDTHYLLHCYDQ 428
Query: 294 MKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQ 351
++ +L S EN+ L E VY S C +Y+K + Y + L G LN++
Sbjct: 429 LRKRLLS----QENAANNLLEFVYNESAQTCLTVYKKPKFESDGYEKL--LVGRKPLNSR 482
Query: 352 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
Q +A L +WRD AR DDES YVLP +++IA+ LP
Sbjct: 483 QQFALAALWKWRDERARTDDESPQYVLPCHMMLQIAEVLP 522
>gi|342180559|emb|CCC90035.1| putative ribosomal RNA processing protein 6 [Trypanosoma congolense
IL3000]
Length = 745
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 135/367 (36%), Positives = 206/367 (56%), Gaps = 18/367 (4%)
Query: 65 ITKPQEEYKIVVNNANQPFQHVW-----LQKSEDSGRFIHP----LDNLSVLDFVDKDIG 115
IT+PQ ++ V+N PF V+ ++ + G +HP + N S+ + +
Sbjct: 174 ITRPQLTFEHPVDNTATPFCPVYYDEKGIRHVGEPG--VHPFAERIKNASISS--AQLLL 229
Query: 116 DVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIST 175
E P L+ P V+ V+ L+ + A L E AVDLEH+ + S+ G TCLMQIS+
Sbjct: 230 KTETPYLP-LDSCPLTFVDAVESLQTVVAVLLKETEIAVDLEHHDFYSYQGFTCLMQISS 288
Query: 176 RTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQA 235
RTEDF++D LKLR + L VF +P+ KV+HGA DI WLQ+DFG+Y+ N+FDT A
Sbjct: 289 RTEDFIIDCLKLRSHMH-LLAPVFLEPSIVKVLHGAREDIRWLQKDFGLYVVNLFDTSVA 347
Query: 236 SRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
+ L + +SL + + HFC V NK+YQ ADWRVRP+P EM+ YA++DTH+LLY+YD +K
Sbjct: 348 LQNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMISYAQQDTHFLLYVYDRLK 406
Query: 296 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQQLA 354
L + + + L V++ S + + YEK +L + +Y G GL+ QL
Sbjct: 407 QLLLNCESRATVGNM-LVHVFQESRALSLERYEKPQLDPDATYKLALGRSLGGLSLSQLQ 465
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 414
V + WRD AR D+S V+ ++ IA +LP +A ++ + + +
Sbjct: 466 VAREIFNWRDAAAREADDSPSAVMHISCVLSIATRLPLSANEVLKCCSPVSVIVRTNVMK 525
Query: 415 VLSIIKN 421
+L I+K+
Sbjct: 526 LLQIVKS 532
>gi|320588480|gb|EFX00949.1| exosome complex exonuclease [Grosmannia clavigera kw1407]
Length = 1631
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 132/341 (38%), Positives = 192/341 (56%), Gaps = 34/341 (9%)
Query: 126 EQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTL 185
E T V+ + ++ + +L+ D AVDLEH+ +R++ GL LMQISTR +D+VVDTL
Sbjct: 224 EGTKAIWVDTFEGVQAMLEELRQADVIAVDLEHHDFRTYTGLLSLMQISTREKDWVVDTL 283
Query: 186 ---KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE 242
+ R+++ L EVF DPTK KV HGA DIVWLQRD G+Y+ +FDT A L+
Sbjct: 284 TPWRHRLEI---LNEVFADPTKIKVFHGATSDIVWLQRDLGLYIVGLFDTYFACDCLEYP 340
Query: 243 RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 302
SL YLL F +A+K+YQ ADWR+RPLP+EML YAR DTH+LLY+YD+++ +L
Sbjct: 341 ARSLAYLLKKFVDFDADKKYQMADWRIRPLPEEMLYYARSDTHFLLYVYDMVRNEL---- 396
Query: 303 KESENSDTPLTEVYKRSYDVCRQLYEKELLSE-----------------NSYLHIYGLQG 345
+E S+ L E Y V R+ E +L NS + Y +
Sbjct: 397 --AEKSEKLLPEASLTGY-VLRRSKETSMLRHEVALCDPETGLGSRGWLNSLMRTYSM-- 451
Query: 346 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 405
LN+ Q AV + WRD +AR DES GYV+P R++ +IA+ LP+ + LL +
Sbjct: 452 --LNSSQFAVFKAIFRWRDDLARRLDESPGYVMPIRSVGDIARILPSDRKAMWSLLNNAA 509
Query: 406 SYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASE 446
+ M + +I+ + A+ ++ L+ E + AS+
Sbjct: 510 RETKSSMEEIFLLIQQAKLRGADGPSSSEFLRSEAVGAASK 550
>gi|448519311|ref|XP_003868060.1| Rrp6 nuclear exosome exonuclease component [Candida orthopsilosis
Co 90-125]
gi|380352399|emb|CCG22625.1| Rrp6 nuclear exosome exonuclease component [Candida orthopsilosis]
Length = 814
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 181/553 (32%), Positives = 269/553 (48%), Gaps = 98/553 (17%)
Query: 1 MDVSFDEFSKARGENGEGDGNEGGFQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPF 60
+D +FD+ +K + GG Q Y ++ G++ S + R EK ++ F
Sbjct: 145 IDYTFDQINKKQA---------GGEQKQYLED--------GNSSISNEQTQRIEKPQLKF 187
Query: 61 HVPTITKPQEEYKIVVN---NANQPFQHVWLQKS-----EDSGRFI------HPLD-NLS 105
VP QE +K + NA QPF+ V + EDS + HP + +
Sbjct: 188 KVPVDNSEQEPFKPKITSKPNALQPFESVNKLTNPAPVYEDSIEVVDPPYYAHPYEYEID 247
Query: 106 VLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFL 165
+ D + + E + P T V+ V L E+ +L E AVDLEH+ YRS+
Sbjct: 248 TQPYPDSILEESEPIPPNDWSSTSAIWVDTVDGLNEMIKELSQSSEIAVDLEHHDYRSYY 307
Query: 166 GLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIY 225
G+ CLMQIS R +D+++DTL LR + L ++F DP KV+HGA DI+WLQRD G+Y
Sbjct: 308 GIVCLMQISNREKDWIIDTLVLRGDLSA-LNKIFTDPKIIKVLHGAFMDIIWLQRDLGLY 366
Query: 226 LCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTH 285
+ ++FDT ASR L + SL+YLL F +K+YQ ADWR+RPLP ML YAR DTH
Sbjct: 367 IVSLFDTYHASRQLGFSKFSLQYLLDTFAHFRTSKKYQLADWRIRPLPKPMLAYARSDTH 426
Query: 286 YLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK---ELLSEN------- 335
+LLYI+D ++ KL K L V S V ++ +E LS N
Sbjct: 427 FLLYIFDQLRNKLIDSDK--------LARVLFDSRQVAKRRFEYTKFRPLSSNLGSKVSC 478
Query: 336 ------------SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 383
S ++ Y + A + VV L +WRD+IAR +DES Y++PN+ L
Sbjct: 479 PVMAANPNEPWGSLMYQYNVP-----AFKRPVVEQLYKWRDLIARQEDESVRYIMPNQLL 533
Query: 384 IEIAK-QLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 442
+ +A + P A K+ + SY+ + + N+ + A E+I Q LKE
Sbjct: 534 VSLATLESPVDAGKVLNV----PSYVSEH------VRLNARELA---ELIDQTLKE---- 576
Query: 443 VASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAE 502
SE+ + ++D +N V + VD ++A+ G QL Q K+ + +
Sbjct: 577 --SEQNDWAIVDKWNNQSTVQVEEQKVD-IEAVNGLL-------DQLLQNSAKLFTEDSL 626
Query: 503 LDRNGLGSFAHPG 515
L+ N S A PG
Sbjct: 627 LNNN--SSVAIPG 637
>gi|392579689|gb|EIW72816.1| hypothetical protein TREMEDRAFT_70822 [Tremella mesenterica DSM
1558]
Length = 955
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 137/399 (34%), Positives = 204/399 (51%), Gaps = 57/399 (14%)
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRT 177
E + P + +TP+ ++ + L+E+ LKSV E AVDLE++ SF G TCL+QISTR
Sbjct: 279 EPIIPKPMNETPYSFIDTPEQLEEMVTHLKSVTEIAVDLEYHSTHSFAGFTCLIQISTRE 338
Query: 178 EDFVVDTLKLRVQVG-PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
D++VD +KLR ++ L V DP+ KV HG+ DI WLQ+DF I++ +FDT A+
Sbjct: 339 RDYIVDAIKLRSELRRDKLGGVMVDPSIVKVFHGSQSDIPWLQQDFSIFVVGLFDTFHAT 398
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296
VL +SL LL +C +A+K YQ ADWR+RPLP+EM YAR DTH+LLYIYD ++
Sbjct: 399 LVLNFPAHSLASLLKLYCNFDADKRYQLADWRIRPLPEEMEMYARADTHFLLYIYDKLRN 458
Query: 297 KL-----SSMP-----KESENSDT--------------PLTEVYKRSYDVCRQLYEKELL 332
L S +P KES+ SDT + E +RS +Y+
Sbjct: 459 ALLDKSVSLLPTPVGDKESKTSDTAENGTVEEGHLAHSAMKETLERSAQTSLIMYQPNYY 518
Query: 333 SENSYLHIYGLQGA-------GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 385
E + G + A + + AV L WRD +AR +DES +VLPN L+
Sbjct: 519 DEKTGRGSGGWREACSRWLPSSKDTEAGAVFKALHSWRDSLARNEDESPVWVLPNDKLVA 578
Query: 386 IAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVAS 445
++KQ P+T +++++ + R+ +LS+I AS
Sbjct: 579 LSKQRPSTLFVVQKIIGNYSPLALRHAADILSVI------------------------AS 614
Query: 446 EETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPP 484
+ + + +P ES+ +D+ V T+P PP
Sbjct: 615 TKASFTLARNPPAISLPPPNPESLSSIDSSV-QTLPKPP 652
>gi|321465482|gb|EFX76483.1| hypothetical protein DAPPUDRAFT_226045 [Daphnia pulex]
Length = 544
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 144/418 (34%), Positives = 215/418 (51%), Gaps = 48/418 (11%)
Query: 67 KPQEEYKIVVNNANQPFQHVWLQKSEDSG------RFIHP----LDNLSVLDFVDKDIGD 116
KPQ +K + N ++PF+H +K R HP L S K +
Sbjct: 26 KPQLNFKEKITNDSKPFRHKLKEKPHCLNPLSMEQRDRHPYEFELKKFSPDSTFLKIKHE 85
Query: 117 VEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTR 176
V +P S TP +V+ + + L L S VDLEH+ RS+ G+TCLMQIST
Sbjct: 86 VPHFQPVS--STPLIMVDTTEAFEHLLRDLLSQTVIGVDLEHHSDRSYRGITCLMQISTD 143
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
D+++DTL+L + P L +VF DP K+ GAD D++WLQRDFGIY+ N+FDT QA+
Sbjct: 144 KTDYIIDTLQLWDHLQP-LNKVFCDPNIVKIFQGADSDVIWLQRDFGIYVVNLFDTLQAA 202
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296
+L ++ L +LL H+C V+ NK+YQ ADWR+RPLP EM++YAREDTHYL+YIY+ MK
Sbjct: 203 SLLGFQKKGLYFLLQHYCQVHVNKKYQLADWRIRPLPQEMVKYAREDTHYLIYIYERMKQ 262
Query: 297 KLSS----------------MPKESENSD--------TPLTE--------VYKRSYDVCR 324
L S P+E ++ TP+ E V+ S VC
Sbjct: 263 DLYSRHCLGDVKITPEMKKGTPEEPKDRKSKSKSSQITPVNEKGVNQVLQVWNNSRSVCL 322
Query: 325 QLYEKELLSE--NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 382
+ Y + L E + + +G N QQ + + WRD +AR DES YV+
Sbjct: 323 KQYRIQTLEEMYSKFYSSLNKEGKKFNNQQSYALQEIFSWRDRVARELDESPHYVMTKFN 382
Query: 383 LIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEER 440
++ I QL + + + S+H ++ +++ + +I + A I++K ++R
Sbjct: 383 MLNIISQLHNQPENILQPI-SRHRFVHQHLPQLHEVIVKAKAIAIQSSPISKKQTKKR 439
>gi|145548742|ref|XP_001460051.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124427879|emb|CAK92654.1| unnamed protein product [Paramecium tetraurelia]
Length = 676
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 143/394 (36%), Positives = 218/394 (55%), Gaps = 36/394 (9%)
Query: 51 DRKEKSKVPFHVPTITKPQ----EEYKIVVNNANQPFQHVWLQKSEDSGRFIHP----LD 102
D + +K+PF +P + Q E + +V N P+Q + +K E F HP +
Sbjct: 113 DAIQLNKLPF-IPVLKYKQYAQTELDQKIVEAQNNPYQ--FFEKYE-IDEFAHPYYEEIL 168
Query: 103 NLSVLDFV---DKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKS-VD-----EFA 153
L+ DFV I ++PP + + L EL K++ VD E A
Sbjct: 169 RLTPQDFVLDVPSKINRYRDLEPPMM-------ITNADHLGELVLKIQQEVDQNGFSEIA 221
Query: 154 VDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADR 213
VDLEHN S+LG+TCL+Q+STR++D+++D L Q+G L +F +P KV HGA+
Sbjct: 222 VDLEHNHQISYLGITCLIQLSTRSQDYIIDPFPLWKQLGDMLSVIFANPKIVKVFHGAEN 281
Query: 214 DIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLP 273
D+ WLQRDFG+Y+ N+FDT AS+ L+L +NS ++LL +C + +K YQ ADW RPLP
Sbjct: 282 DVQWLQRDFGLYIVNLFDTFHASKELQLMQNSFQFLLSEYCKKSTDKTYQTADWTQRPLP 341
Query: 274 DEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN-SDTP---LTEVYKRSYDVCRQLYEK 329
DEM++YA+ DTHYLLYIYD M+ L + K ++N S+ P L V KRS + ++Y+K
Sbjct: 342 DEMIKYAQIDTHYLLYIYDRMRQDLKKLNKPNDNISNIPNYYLEAVLKRSKETALKIYKK 401
Query: 330 ELLSENSYLH-IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 388
L ++ L I Q + A+ ++ L E R+ + D++ Y LPN L +I +
Sbjct: 402 PLQDQDQSLQTILNKQDRRMEAKSFELMVRLLELREELGIKHDQNPRYFLPNPFLFKIVE 461
Query: 389 QLPTTAAKLRRLL---KSKHSYIERYMGPVLSII 419
PTT +L+ L K+ H ++ + L ++
Sbjct: 462 SKPTTIQELKSQLGGDKNIHEVVKDNLWQFLKVL 495
>gi|358385873|gb|EHK23469.1| hypothetical protein TRIVIDRAFT_123406, partial [Trichoderma virens
Gv29-8]
Length = 821
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 200/387 (51%), Gaps = 26/387 (6%)
Query: 40 GGSAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNN----------ANQPFQHVWLQ 89
G + ++ K K K KV + KPQ ++++ NN +P V L
Sbjct: 116 NGDSDSNSKAKQTKPTGKV-IRNANVKKPQLDFELKPNNFPDGPWKPLLTEKPHADVSLD 174
Query: 90 KS-----EDSG--RFIHPLD-NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKE 141
S D+G ++ HP + +S + + D+ + + P +E T V+ + + +
Sbjct: 175 DSLVTFVADNGAPQYKHPYEAEISSMQYPDRVFQIQDPMPPQPVESTAATWVDTYEGVVD 234
Query: 142 LAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKD 201
+ +LK E AVDLEH+ +R+++GL LMQISTR +D++VDTLK L EVF D
Sbjct: 235 MLQELKKAKEIAVDLEHHDFRTYIGLVSLMQISTREKDWIVDTLKPWRHKLQVLNEVFAD 294
Query: 202 PTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKE 261
PT KV HGA D+VWLQRD G+Y+ +FDT AS L SL +LL F A+K
Sbjct: 295 PTIVKVFHGAYMDMVWLQRDLGLYVNGLFDTFFASEALHYSSRSLAFLLSKFVNFEADKR 354
Query: 262 YQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYD 321
YQ ADWR+RPLP+EM+ YAR DTHYLLYIYD ++ L + S ++ V ++S
Sbjct: 355 YQLADWRIRPLPEEMMYYARSDTHYLLYIYDKIRNDLVQLSDRSNPDKDLISIVLEKSRG 414
Query: 322 VCRQLYEKELLSENS-------YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 374
+ +E +E + Y + G + Q A+ L +WRDV AR +DE+
Sbjct: 415 LSLSRHENLEFNEETGEGSRGWYNFVLKNSHFGYKSDQFAIFRALWKWRDVTARTEDENP 474
Query: 375 GYVLPNRTLIEIAKQLPTTAAKLRRLL 401
+VL L EIA+ P A LL
Sbjct: 475 NFVLGTSNLTEIARANPPDAKAFHSLL 501
>gi|406862035|gb|EKD15087.1| putative exosome complex exonuclease Rrp6 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 804
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 179/314 (57%), Gaps = 14/314 (4%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
E T V+ + ++E+ +LK E A+DLEH+ RS++GL LMQISTR +D++VDT
Sbjct: 238 FETTSATFVDTEEGVREMLEELKEASEIAIDLEHHDQRSYVGLVSLMQISTREKDWIVDT 297
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LK Q L EVF DP KV HGA DIVWLQRD G+Y+ +FDT ASR L
Sbjct: 298 LKPWRQNLQVLNEVFADPKIIKVFHGAFMDIVWLQRDLGLYVVGLFDTHHASRALGYSGA 357
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL +LL F +A+K+YQ ADWR+RPLP EM YAR DTH+LLYI+D+++ +L +
Sbjct: 358 SLAFLLKKFIDFDADKQYQMADWRIRPLPAEMFFYARADTHFLLYIFDMVRNELI----D 413
Query: 305 SENSDTPLTEVYKRSYDVCRQL----YEKELLSENS------YLHIYGLQGAGLNAQQLA 354
NS+ P + + C++ +E+++ + +S + + L+ +Q A
Sbjct: 414 RSNSEVPDENRLEITLQKCKETSLLRFERQVYNTDSGKGPGGWFSQLNKTPSLLSNEQFA 473
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 414
V + WRD IAR DD+S +VLP ++ +AK +P + L+KS ++
Sbjct: 474 VFRAVHGWRDKIARIDDDSPTFVLPQHAVLTLAKLMPMDMVGVLGLIKSGSHSVKSRAAE 533
Query: 415 VLSIIKNSMQNAAN 428
+L +IK++ N
Sbjct: 534 LLDVIKSAKAQGKN 547
>gi|303310683|ref|XP_003065353.1| exosome component 3'-5' exonuclease [Coccidioides posadasii C735
delta SOWgp]
gi|240105015|gb|EER23208.1| 3'-5' exonuclease family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 766
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 146/407 (35%), Positives = 201/407 (49%), Gaps = 47/407 (11%)
Query: 52 RKEKSKVP----FHVPTITKPQEEYKIVVNN-ANQPFQHVWLQKSEDSGRFIHPLDNLSV 106
R K++ P F I KPQ +K NN A+ PF+ + QK H L L
Sbjct: 128 RASKAQFPGAYNFASSKIPKPQLSFKTRPNNHASSPFRPILRQKP-------HALIPLPP 180
Query: 107 LDFVDKDIGDVEAVKPP------------------------SLEQTPFKLVEEVKDLKEL 142
+ GDVE + P E T V ++ +K +
Sbjct: 181 VAEQTSTNGDVEQSEHPYAHEIKDCHYPASTYSSSTPQLYKPFESTTATFVNTIEGVKVM 240
Query: 143 AAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDP 202
+LKS E AVDLEH+ S+ GL CLMQISTR +D++VDTL + L EVF DP
Sbjct: 241 LEELKSAKEIAVDLEHHDAHSYHGLVCLMQISTREKDWIVDTLLPWREELQILNEVFADP 300
Query: 203 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 262
KV+HG+ D++WLQRD G+YL +FDT AS L + SL++LL F + A K+Y
Sbjct: 301 RILKVLHGSSMDVIWLQRDLGLYLVGLFDTYHASVALNYPKKSLKFLLDKFVNLEAEKQY 360
Query: 263 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE-VYKRSYD 321
Q ADWR+RPL M YAR DTHYLLYIYD ++ +L E DT L + V +S +
Sbjct: 361 QTADWRLRPLLPGMFDYARSDTHYLLYIYDNLRNELI----EKSTPDTNLIDYVQDKSKE 416
Query: 322 VCRQLYEKELLSENS------YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 375
Q YE+ + + + + + LN +QLAV + WRD AR DDE
Sbjct: 417 EALQRYERPVYDAETGQGSGGWYDVLSRSPSLLNREQLAVFKAVHRWRDQTARTDDEGVQ 476
Query: 376 YVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
VL R L IA +P+ A L +L + + + +L +IK++
Sbjct: 477 SVLSKRALFAIAHGMPSDQAGLLKLAIPVSPSLRKRLSELLKVIKDA 523
>gi|320034794|gb|EFW16737.1| exosome complex exonuclease Rrp6 [Coccidioides posadasii str.
Silveira]
Length = 772
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 146/407 (35%), Positives = 201/407 (49%), Gaps = 47/407 (11%)
Query: 52 RKEKSKVP----FHVPTITKPQEEYKIVVNN-ANQPFQHVWLQKSEDSGRFIHPLDNLSV 106
R K++ P F I KPQ +K NN A+ PF+ + QK H L L
Sbjct: 128 RASKAQFPGAYNFASSKIPKPQLSFKTRPNNHASSPFRPILRQKP-------HALIPLPP 180
Query: 107 LDFVDKDIGDVEAVKPP------------------------SLEQTPFKLVEEVKDLKEL 142
+ GDVE + P E T V ++ +K +
Sbjct: 181 VAEQTSTNGDVEQSEHPYAHEIKDCHYPASTYSSSTPQLYKPFESTTATFVNTIEGVKVM 240
Query: 143 AAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDP 202
+LKS E AVDLEH+ S+ GL CLMQISTR +D++VDTL + L EVF DP
Sbjct: 241 LEELKSAKEIAVDLEHHDAHSYHGLVCLMQISTREKDWIVDTLLPWREELQILNEVFADP 300
Query: 203 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 262
KV+HG+ D++WLQRD G+YL +FDT AS L + SL++LL F + A K+Y
Sbjct: 301 RILKVLHGSSMDVIWLQRDLGLYLVGLFDTYHASVALNYPKKSLKFLLDKFVNLEAEKQY 360
Query: 263 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE-VYKRSYD 321
Q ADWR+RPL M YAR DTHYLLYIYD ++ +L E DT L + V +S +
Sbjct: 361 QTADWRLRPLLPGMFDYARSDTHYLLYIYDNLRNELI----EKSTPDTNLIDYVQDKSKE 416
Query: 322 VCRQLYEKELLSENS------YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 375
Q YE+ + + + + + LN +QLAV + WRD AR DDE
Sbjct: 417 EALQRYERPVYDAETGQGSGGWYDVLSRSPSLLNREQLAVFKAVHRWRDQTARTDDEGVQ 476
Query: 376 YVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
VL R L IA +P+ A L +L + + + +L +IK++
Sbjct: 477 SVLSKRALFAIAHGMPSDQAGLLKLAIPVSPSLRKRLSELLKVIKDA 523
>gi|358339908|dbj|GAA47879.1| exosome complex exonuclease RRP6, partial [Clonorchis sinensis]
Length = 1125
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/295 (41%), Positives = 172/295 (58%), Gaps = 12/295 (4%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+K V+ + L A++ E AVDLEH+ +RS+LG+TCL+Q+STRT D+++D L LR
Sbjct: 596 YKFVDTLSALDAALAEISLHKEIAVDLEHHSHRSYLGITCLVQLSTRTTDYILDALALRD 655
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
+ L +F DP KV HG+D D++WLQRDF IY+ N+FDTG A+R L+L R SL +L
Sbjct: 656 HLHK-LNVIFTDPDVVKVFHGSDLDLMWLQRDFSIYVVNLFDTGLAARALQLGRFSLSFL 714
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
L + V ANK+YQ ADWR+RPLPDE++ YAR DTHYLL++ +M E D
Sbjct: 715 LLRYANVRANKKYQLADWRIRPLPDELIEYARTDTHYLLHVSAVMC---------QELQD 765
Query: 310 TPLTE-VYKRSYDVCRQLYEKELLSENSYLHIY-GLQGAGLNAQQLAVVAGLCEWRDVIA 367
L + V + +C + Y K YL +Y G N +QL + L RD IA
Sbjct: 766 RGLLDVVLEGGRQLCLKRYTKPAFDPLGYLSLYRQAAGTSFNHRQLYALEQLYALRDSIA 825
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
R +DES YVLPN L IA+ LP ++ L + +Y+ + II ++
Sbjct: 826 RREDESVHYVLPNHMLKTIAEVLPRESSGLFACCNPIPPLVRKYVHDLHKIIVDA 880
>gi|453081050|gb|EMF09100.1| 3_5_exonuc-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 782
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/275 (41%), Positives = 164/275 (59%), Gaps = 9/275 (3%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+QT LV+ + L E+ +LK E A+DLEH+ RS++G+ LMQISTR +D++VDT
Sbjct: 212 FDQTTATLVDTEEALSEMLEELKQAKEIAIDLEHHDSRSYIGIVSLMQISTRDKDWIVDT 271
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LK + L EVF DP KV+HGA DI+WLQRD G+Y+ +FDT A+ VL
Sbjct: 272 LKPWRRKLQCLNEVFADPGIIKVLHGAFMDIMWLQRDLGLYIVGLFDTFHAASVLGYTGR 331
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK---IKLSSM 301
SL +LL F V+A K+YQ ADWRVRPLP E+ YAR DTH+LLYI+D M+ I S++
Sbjct: 332 SLAFLLKKFANVDAQKQYQTADWRVRPLPTELFDYARSDTHFLLYIFDNMRNELIHRSNL 391
Query: 302 PKESENSDTPLTEVYKRSYDVCRQ-----LYEKELLSENSYLHIYGLQGAGLNAQQLAVV 356
+ D + +V +RS + Q +Y+ EL + + A L +Q +V
Sbjct: 392 ELPNHEGDK-IYDVLQRSSEEALQRYEYPVYDAELGQGAGWYRLLSRTSAMLTKEQFSVF 450
Query: 357 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ +WRD +AR D+S Y++PN + IA+ +P
Sbjct: 451 RAVHQWRDEVAREQDDSVNYIMPNHQIFSIARAMP 485
>gi|302657746|ref|XP_003020587.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum
HKI 0517]
gi|291184437|gb|EFE39969.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum
HKI 0517]
Length = 881
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 173/311 (55%), Gaps = 15/311 (4%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
VE ++D+ + ++LK E AVDLEH+ + GL CLMQISTR +D++VDTLK
Sbjct: 248 FVETLEDVHAMLSQLKQAKEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQ 307
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLH 251
L EVF DP+ KV+HG+ D++WLQRD G+YL +FDT A+ L+L + SL++LLH
Sbjct: 308 LQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASALQLPKKSLKFLLH 367
Query: 252 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK-LSSMPKESENSDT 310
+ G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI+D ++ + L +P SE ++
Sbjct: 368 EYVGFDADKQYQTADWRIRPLLAGMLDYARSDTHFLLYIFDRLRNQLLELLPSSSEEKES 427
Query: 311 --------PLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGLQGAGLNAQQLAVV 356
+ V +RS + Q YE+ + + L +Q AV
Sbjct: 428 GPGGGGREAIEYVLERSKECALQRYERPTYDAATGRGSGGWHDMLSNSPVALTREQFAVF 487
Query: 357 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVL 416
L EWRD ARADDES VL R L +A+++P + R+ + + V
Sbjct: 488 RALHEWRDKTARADDESPQTVLSKRALFRLAQEMPEDKFAVLRMGSPVSASLRSRTDEVA 547
Query: 417 SIIKNSMQNAA 427
+I+ + Q
Sbjct: 548 GLIREARQQGG 558
>gi|326473059|gb|EGD97068.1| hypothetical protein TESG_04488 [Trichophyton tonsurans CBS 112818]
Length = 898
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 167/299 (55%), Gaps = 9/299 (3%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
VE ++D+ + ++LK +E AVDLEH+ + GL CLMQISTR +D++VDTLK
Sbjct: 235 FVETLEDVHAMLSQLKQAEEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQ 294
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLH 251
L EVF DP+ KV+HG+ D++WLQRD G+YL +FDT A+ L+L + SL++LLH
Sbjct: 295 LQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASALQLPKKSLKFLLH 354
Query: 252 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENS 308
+ G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI+D ++ +L +P ES
Sbjct: 355 EYVGFDADKQYQTADWRIRPLLAGMLDYARSDTHFLLYIFDRLRNQLLDLPSESGFGAGG 414
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
+ + +YD + + L +Q AV L EWRD AR
Sbjct: 415 REAIDCTERPTYDAATGR------GSGGWHDMLSNSPVALTREQFAVFRALHEWRDKTAR 468
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 427
ADDES VL R L +A+++P + R+ + + V +I+ + Q
Sbjct: 469 ADDESPQTVLSKRALFRLAQEMPEDKFAVLRMGSPVSASLRSRTDEVAGLIREARQQGG 527
>gi|343471692|emb|CCD15945.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 604
Score = 222 bits (566), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 135/367 (36%), Positives = 206/367 (56%), Gaps = 18/367 (4%)
Query: 65 ITKPQEEYKIVVNNANQPFQHVW-----LQKSEDSGRFIHP----LDNLSVLDFVDKDIG 115
IT+PQ ++ V+N PF V+ ++ + G +HP + N S+ + +
Sbjct: 174 ITRPQLTFEHPVDNTATPFCPVYYDEKGIRHVGEPG--VHPFAERIKNASISS--AQLLL 229
Query: 116 DVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIST 175
E P L+ P V+ V+ L+ + A L E AVDLEH+ + S+ G TCLMQIS+
Sbjct: 230 KTETPYLP-LDSCPLTFVDAVESLQAVVAVLLKETEIAVDLEHHDFYSYQGFTCLMQISS 288
Query: 176 RTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQA 235
RTEDF++D LKLR + L VF +P+ KV+HGA DI WLQ+DFG+Y+ N+FDT A
Sbjct: 289 RTEDFIIDCLKLRSHMH-LLAPVFLEPSIVKVLHGAREDIRWLQKDFGLYVVNLFDTSVA 347
Query: 236 SRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
+ L + +SL + + HFC V NK+YQ ADWRVRP+P EM+ YA++DTH+LLY+YD +K
Sbjct: 348 LQNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMISYAQQDTHFLLYVYDRLK 406
Query: 296 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQQLA 354
L + + + L V++ S + + YEK +L + +Y G GL+ QL
Sbjct: 407 QLLLNCESRATVGNM-LVHVFQESRALSLERYEKPQLDPDATYKLALGRSLGGLSLSQLQ 465
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 414
V + WRD AR D+S V+ ++ IA +LP +A ++ + + +
Sbjct: 466 VAREIFNWRDAAAREADDSPSAVMHISCVLSIATRLPLSANEVLKCCSPVSVIVRTNVMK 525
Query: 415 VLSIIKN 421
+L I+K+
Sbjct: 526 LLQIVKS 532
>gi|336273270|ref|XP_003351390.1| hypothetical protein SMAC_03697 [Sordaria macrospora k-hell]
gi|380092911|emb|CCC09664.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 821
Score = 222 bits (566), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 129/362 (35%), Positives = 192/362 (53%), Gaps = 9/362 (2%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
++ T ++ + + E+ +LK E A+DLEH+ +RS+ GL LMQISTR +D+V+DT
Sbjct: 223 IDSTSAVWIDTYEGVLEMLEELKQAKEIALDLEHHDFRSYTGLLSLMQISTREKDWVIDT 282
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+ L EVF DP KV+HGA D +WLQRD G+YL +FDT A VL
Sbjct: 283 LQPWRHKLEVLNEVFADPKIVKVLHGAFMDAIWLQRDLGLYLVGLFDTYHACAVLGYPGR 342
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL YLL F A+K+YQ ADWR+RPLP+EM YAR DTHYLLYIYD++ +L
Sbjct: 343 SLGYLLSKFAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYIYDMLVNELIERSTP 402
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL------NAQQLAVVAG 358
+ L +V +RS DV Q YE + + + G L N++Q AV
Sbjct: 403 GKPKPDLLEQVLERSKDVALQRYENPSYNVETGMGPRGWYNVLLKSPTLYNSEQFAVYKA 462
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 418
+ +WRD +AR +DES + + + L +IA+ LPT L +L S ++ ++ + +
Sbjct: 463 VHQWRDNLARREDESPFFFMTQQVLADIARILPTDKKALWSILDSNAKGLKSHLDHLFDV 522
Query: 419 IKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGT 478
I+ + + + + K + +A + ++ D S IP+V D G
Sbjct: 523 IQKAREEGVDGPKMMDIFKSDSSIIAPSKRAAVISDDSD---IPDVKELKADRSQFWGGV 579
Query: 479 TM 480
T+
Sbjct: 580 TL 581
>gi|85094529|ref|XP_959900.1| hypothetical protein NCU02256 [Neurospora crassa OR74A]
gi|28921357|gb|EAA30664.1| hypothetical protein NCU02256 [Neurospora crassa OR74A]
gi|40804632|emb|CAF05892.1| related to nucleolar 100K polymyositis-scleroderma protein
[Neurospora crassa]
Length = 822
Score = 222 bits (566), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 130/364 (35%), Positives = 193/364 (53%), Gaps = 13/364 (3%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
++ T V+ + + E+ +LK E A+DLEH+ +RS+ GL LMQISTR +D+V+DT
Sbjct: 223 IDSTSAIWVDTYEGVLEMLEELKQAKEIALDLEHHDFRSYTGLLSLMQISTREKDWVIDT 282
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+ L EVF +P KV+HGA D++WLQRD G+Y+ +FDT A VL
Sbjct: 283 LQPWRHKLEVLNEVFANPNIVKVLHGAFMDVIWLQRDLGLYVVGLFDTYHACAVLGYPGR 342
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL YLL F A+K+YQ ADWR+RPLP+EM YAR DTHYLLYI+D++ +L
Sbjct: 343 SLGYLLSKFAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYIFDMIINELVERSTP 402
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSEN--------SYLHIYGLQGAGLNAQQLAVV 356
+ L +V +RS DV Q YE LS N + ++ N +Q AV
Sbjct: 403 GKPKPDLLEQVLERSKDVALQRYEN--LSYNVETGQGPRGWYNVLLKSPTLYNGEQFAVY 460
Query: 357 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVL 416
+ +WRD +AR +DES + + + L +IA+ LPT L +L S ++ ++ +
Sbjct: 461 KAVHQWRDNLARREDESPFFFMTQQVLADIARILPTDKKALWSILDSNAKGLKSHLDDLF 520
Query: 417 SIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALV 476
+I+ + + N + K E +A + ++ D S IP+V D
Sbjct: 521 DVIQKAREEGVNGPKMMDIFKSESSILAPAKIAAVIADDSD---IPDVKELKADRSQFWG 577
Query: 477 GTTM 480
G T+
Sbjct: 578 GVTL 581
>gi|388857402|emb|CCF49076.1| related to RRP6-Exonuclease component of the nuclear exosome
[Ustilago hordei]
Length = 1006
Score = 222 bits (566), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 129/344 (37%), Positives = 191/344 (55%), Gaps = 30/344 (8%)
Query: 121 KPPSL--EQTPFKLVEEVKDLKELAAKLKS--VDEFAVDLEHNQYRSFLGLTCLMQISTR 176
K PSL + PF+ V +++L L V E A+DLEH+ YR++ G+ CLMQ+STR
Sbjct: 335 KDPSLSTDACPFQWVSTKAQIEQLRDHLDEDRVKEIAIDLEHHSYRTYQGIVCLMQLSTR 394
Query: 177 TEDFVVDTLKLRV-QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQA 235
D+++DTL V Q L F DP+K KV+HGA+ D++WLQRD G+YL N+FDT A
Sbjct: 395 WGDWIIDTLSDEVRQHAELLNSSFTDPSKVKVLHGANHDVLWLQRDLGLYLVNLFDTYHA 454
Query: 236 SRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
+ VL + L YL+ +C +A+K YQ ADWR+RPLP EML YAR DTH LLYIYD ++
Sbjct: 455 TNVLMFPSHGLNYLMARYCNFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLYIYDNLR 514
Query: 296 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL-----SENSYLHIYGLQG--AGL 348
+L ES D + EV+ RS DV Y KE + + ++ G A L
Sbjct: 515 HEL----MESGGLDA-IREVFNRSKDVAMSTYAKEEWDSQGETREGWRSVWRKWGGEAAL 569
Query: 349 NAQ----------QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 398
+ + +V L +WRD +AR +DES Y+L L+ +A + P +
Sbjct: 570 GTEDRRELSQMKKEERLVRALHKWRDGVAREEDESPRYILGANNLMMLAARAPVKPEGVL 629
Query: 399 RLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 442
+ S +++ +G + +IK+ ++ +E +KL EE+ +
Sbjct: 630 ACVPPNASGLKKRIGELAKLIKDEVE---AWEKHQEKLSEEKRQ 670
>gi|322708171|gb|EFY99748.1| exosome complex exonuclease Rrp6, putative [Metarhizium anisopliae
ARSEF 23]
Length = 830
Score = 222 bits (565), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 127/362 (35%), Positives = 198/362 (54%), Gaps = 25/362 (6%)
Query: 65 ITKPQEEYKIVVNN----------ANQPFQHVWLQKS------ED-SGRFIHPLDN-LSV 106
ITKPQ ++ +N AN+P V L++S ED + ++ HP + +S
Sbjct: 140 ITKPQAMFEKKPDNFPTGPWKPILANKPHATVSLEQSLFTAPGEDGTAQYKHPYETEIST 199
Query: 107 LDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLG 166
+ + + + + ++ T V+ + + E+ +L+ E AVDLEH+ +R++ G
Sbjct: 200 MKYPEWVFQKHDPIPSQPIDSTKATWVDTYEGVLEMLEELRKAKEIAVDLEHHDFRTYTG 259
Query: 167 LTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYL 226
L CLMQ+STR D++VDTL+ L +VF DP+ KV HGA D+VWLQRD G+Y+
Sbjct: 260 LVCLMQVSTRDRDWIVDTLQPWRHKLEVLNDVFADPSVVKVFHGAYMDMVWLQRDLGLYV 319
Query: 227 CNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHY 286
+FDT A +L SL +LL F G +A+K+YQ ADWR+RP+P++ML YAR DTHY
Sbjct: 320 NGLFDTYFACNLLNYPGRSLAFLLSKFVGFDADKQYQLADWRIRPIPEDMLYYARSDTHY 379
Query: 287 LLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS-------YLH 339
LLYIYD ++ +L +S+ + + +RS ++ +E +E + Y +
Sbjct: 380 LLYIYDNVRNELIEASDKSDPEKDYINQALERSRELALSRHENPDYNETTGEGARGWYNY 439
Query: 340 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 399
++ LN +Q ++ L +WRD AR +DES +VL + EIA+ P L
Sbjct: 440 VFKHSHLALNGEQFSIFKALWKWRDETARQEDESPNFVLGPTNVTEIARVNPPDVKALHS 499
Query: 400 LL 401
LL
Sbjct: 500 LL 501
>gi|145485444|ref|XP_001428730.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124395818|emb|CAK61332.1| unnamed protein product [Paramecium tetraurelia]
Length = 669
Score = 222 bits (565), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 135/345 (39%), Positives = 197/345 (57%), Gaps = 30/345 (8%)
Query: 97 FIHP----LDNLSVLDFVDKDIGDVEAVKPPSLEQT----PFKLVEEVKDLKELAAKLKS 148
F HP + L+ DFV DV PP + + P ++ +L EL K+++
Sbjct: 159 FTHPYYEEITRLTPQDFV----LDV----PPKINRYRDLEPPIMINNADNLGELVLKIQN 210
Query: 149 -VD-----EFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDP 202
VD E AVDLEHN S+LG+TCL+Q+STRT+D+++D L Q+G L VF +P
Sbjct: 211 EVDQNGFSEIAVDLEHNHSISYLGVTCLIQLSTRTQDYIIDPFPLWKQLGDMLSVVFTNP 270
Query: 203 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 262
KV HGAD D+ WLQRDFG+Y+ N+FDT QAS+ L L +NS ++LL +C + +K Y
Sbjct: 271 RIVKVFHGADNDVQWLQRDFGLYIVNLFDTFQASKELLLMQNSFQFLLSEYCKKSTDKTY 330
Query: 263 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN-SDTP---LTEVYKR 318
Q ADW RPL DEM++YA+ DTHYLLYIYD M+ L + K +EN ++ P + V KR
Sbjct: 331 QTADWTQRPLSDEMIKYAQIDTHYLLYIYDRMRQDLKKLNKPNENLNNVPNYYIESVLKR 390
Query: 319 SYDVCRQLYEKELLSENSYLH-IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYV 377
S D ++Y+K L ++ L I Q + A+ ++ L E R+ + D++ Y
Sbjct: 391 SKDTALKIYKKPLQDQDQSLQTILNKQDRRMEAKNFDLMVKLLELREELGIQYDQNPRYF 450
Query: 378 LPNRTLIEIAKQLPTTAAKLRRLL---KSKHSYIERYMGPVLSII 419
LPN L ++ + PT+ +L+ L K H I+ + L I+
Sbjct: 451 LPNPFLFKLVESKPTSIQELKSQLGGDKYIHEIIKENLWQFLKIL 495
>gi|168005501|ref|XP_001755449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693577|gb|EDQ79929.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 824
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 137/352 (38%), Positives = 189/352 (53%), Gaps = 36/352 (10%)
Query: 67 KPQEEYK-IVVNNANQPFQHVWLQKSEDSGRFI-HPLD----------NLSVLDFVDKDI 114
KPQ+ +K ++ +N + PFQH S +G + HP + NLS ++ +
Sbjct: 1 KPQKRFKRVLADNFDSPFQHF---PSPLTGSQVGHPYEDVIRGLAENPNLSFANYYSDN- 56
Query: 115 GDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIS 174
V PP +E P V+ L+ L LK E VD+EH+ RSF G L+QIS
Sbjct: 57 -----VLPPGME-GPCLWVQTRSQLEALVDVLKGEKEIGVDIEHHHVRSFRGFIPLIQIS 110
Query: 175 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
T + D++VD + L + L +F +P K+ HGAD D +WLQRDF IY+ N+FDT +
Sbjct: 111 TYSTDYLVDAIALHDDMH-LLHPIFANPAILKIFHGADNDSLWLQRDFHIYIVNLFDTAR 169
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
A VL + SL YLL +CGV+ K YQ +DWRVRPLP EM YAR D HYLLYI M
Sbjct: 170 ACDVLGKPQRSLAYLLQLYCGVSTKKIYQRSDWRVRPLPAEMEIYARTDAHYLLYIAQCM 229
Query: 295 KIKLSSMPKESE--NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 352
+ L N + L EV +RS VC+QLYEKE + ++S + + G N
Sbjct: 230 RANLVQACNTPSLLNDNQLLLEVVRRSNAVCQQLYEKEGVGDSSSAVVASILGRLYNNSN 289
Query: 353 LA-----------VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 393
A +V L EWRD +ARA+DES +V+ + L+ +AK+ P T
Sbjct: 290 SAMRGEEDAYLRRLVQKLVEWRDALARAEDESLRFVMSDAALLAVAKERPLT 341
>gi|254566215|ref|XP_002490218.1| Exonuclease component of the nuclear exosome [Komagataella pastoris
GS115]
gi|238030014|emb|CAY67937.1| Exonuclease component of the nuclear exosome [Komagataella pastoris
GS115]
gi|328350615|emb|CCA37015.1| exosome complex exonuclease RRP6 [Komagataella pastoris CBS 7435]
Length = 717
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 126/320 (39%), Positives = 179/320 (55%), Gaps = 32/320 (10%)
Query: 126 EQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTL 185
E T VE + + ++ L D AVDLEH+ R++ GL CLMQISTR +D++VDTL
Sbjct: 208 ESTTAIYVETEQQVGDMIDTLSKADVIAVDLEHHDLRTYYGLVCLMQISTRNQDYIVDTL 267
Query: 186 KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS 245
KLR ++ P L +VF DP+ KV HGA DI+WLQRD G+Y+ ++FDT AS++L ++S
Sbjct: 268 KLRFKLQP-LNKVFTDPSIVKVFHGAFMDIIWLQRDLGLYVVSLFDTFHASKLLGFPKHS 326
Query: 246 LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES 305
L YLL + +K+YQ ADWRVRPL +L YAR DTH+LLYI+D +L++M ES
Sbjct: 327 LAYLLETYAKFKTSKKYQLADWRVRPLTKPLLAYARSDTHFLLYIFD----QLNNMLIES 382
Query: 306 ENSDTPLTEVYKRSYDVCRQLYEKELLSEN------------------SYLHIYGLQGAG 347
L++V S V + +E N L++Y + +
Sbjct: 383 GK----LSQVLYDSRQVALRRFEYTKFRPNFPTPLVVSPLNDRKEPWKQLLYLYNIPRS- 437
Query: 348 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 407
+ V L WRD IAR DDEST YVLPN+ L I PT + L + Y
Sbjct: 438 ----RQPVFIALYNWRDEIAREDDESTRYVLPNQLLATITSISPTDVSSLMSCSNIRTPY 493
Query: 408 IERYMGPVLSIIKNSMQNAA 427
+++Y ++ IIK++++ A
Sbjct: 494 LKKYATELVEIIKSTLKEGA 513
>gi|398390487|ref|XP_003848704.1| hypothetical protein MYCGRDRAFT_76687 [Zymoseptoria tritici IPO323]
gi|339468579|gb|EGP83680.1| hypothetical protein MYCGRDRAFT_76687 [Zymoseptoria tritici IPO323]
Length = 796
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 170/313 (54%), Gaps = 10/313 (3%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
E T V+ + L E+ +LK E A+DLEH+ RS++G+ LMQISTR +D++VDT
Sbjct: 216 FETTTATFVDTEESLAEMLEELKQAKEIAIDLEHHDNRSYIGIVSLMQISTRDKDWIVDT 275
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LK + L EVF +PT KV+HGA D +WLQRD G+YL +FDT A R L
Sbjct: 276 LKPWRRKLQCLNEVFANPTIVKVLHGAFMDAIWLQRDLGLYLVGLFDTHYACRALGYAGG 335
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK---IKLSSM 301
SL +LL F V+A K++Q ADWRVRPLP E+ YAR DTHYLLYI+D M+ I+ S
Sbjct: 336 SLAFLLKKFADVDAQKQHQMADWRVRPLPKELFDYARSDTHYLLYIFDCMRNELIERSDF 395
Query: 302 PKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN------SYLHIYGLQGAGLNAQQLAV 355
K D L +V ++S +V Q YE + + A + +Q AV
Sbjct: 396 SKPDHEGDK-LWDVLQKSTEVALQRYEHPQYDAELGQGAMGWYKLLSRTPALFSPEQFAV 454
Query: 356 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPV 415
+ WRD +AR D+S +V+PN + +AK +P T L + + + +
Sbjct: 455 FKAVHHWRDRVAREQDDSIHFVMPNHQIFSLAKAMPPTRLALMGIAQPTTQTVRLRADEL 514
Query: 416 LSIIKNSMQNAAN 428
LS+I + + N
Sbjct: 515 LSVIVRAQEAGKN 527
>gi|380485396|emb|CCF39387.1| 3'-5' exonuclease [Colletotrichum higginsianum]
Length = 732
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 171/293 (58%), Gaps = 9/293 (3%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E T V+ + + ++ LK E AVDLEH+ +R+++GLT LMQISTR +D++VDT
Sbjct: 67 VETTEATFVDTYEGVLDMLKDLKKAKEIAVDLEHHDFRTYVGLTSLMQISTREKDWIVDT 126
Query: 185 LK-LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLER 243
LK R Q+ L EVF DP+ KV HGA D+VWLQRD G+Y+ +FDTG A VL +
Sbjct: 127 LKPWRGQL-EVLNEVFADPSIVKVFHGAFMDMVWLQRDLGLYVNGLFDTGMACEVLHYPQ 185
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
SL +LL F +A+K+YQ ADWRVRPL +EML YAR DTHYLLYIYD M+ +L
Sbjct: 186 KSLAFLLKKFVNFDADKKYQLADWRVRPLSEEMLYYARSDTHYLLYIYDKMRNELVMKSD 245
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL------NAQQLAVVA 357
+ ++S + Y E + + G L + QQ AV
Sbjct: 246 RGNPGSDYIEAALQKSKTLSLSRYGGETFNPKTGKGSKGWYNTLLKHPMPFSGQQFAVYR 305
Query: 358 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 410
+ WRD +AR +DEST +VLPN + +IAK +P A L L+ + H+++ +
Sbjct: 306 AIWAWRDEVARREDESTPFVLPNGIIGDIAKHMPPDAKALHALIPN-HAFLAK 357
>gi|260950129|ref|XP_002619361.1| hypothetical protein CLUG_00520 [Clavispora lusitaniae ATCC 42720]
gi|238846933|gb|EEQ36397.1| hypothetical protein CLUG_00520 [Clavispora lusitaniae ATCC 42720]
Length = 738
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/335 (37%), Positives = 191/335 (57%), Gaps = 23/335 (6%)
Query: 128 TPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKL 187
T K V+ V L+E+ L+S E A+DLEH+ YRS+ G+TCLMQIS R +D++VDTL L
Sbjct: 217 TAAKWVDTVDALQEMIEALRSSTEIAIDLEHHDYRSYYGITCLMQISNREQDWIVDTLAL 276
Query: 188 RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLE 247
+ L E+F +P KV+HGA+ DI+WLQRD G+Y+ ++FDT AS+ L + SL
Sbjct: 277 HDDLRD-LNEIFANPAILKVLHGANMDIIWLQRDLGLYIVSLFDTYHASKKLGFPKFSLA 335
Query: 248 YLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
YLL +F +K+YQ ADWR+RPL D M++YAR DTH+LL IYD ++ KL + +
Sbjct: 336 YLLENFAHFKTSKKYQLADWRIRPLTDAMMQYARADTHFLLNIYDQLRNKLLNAGQ---- 391
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSE---NSYLHIYGLQGA--------GLNAQQLAVV 356
+ EV S V + +E + ++++H YG G + +++ +V
Sbjct: 392 --GKVQEVLYESRKVASRRFEFNSFKQDQTDNWMHSYGGMGQERWVMNQYNIEPERIEIV 449
Query: 357 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL-PTTAAKLRRLLKSKHSYIERYMGPV 415
L WRD +AR DEST Y++ N+ L ++ + P A+K+ S++S + + +
Sbjct: 450 QALINWRDKVAREKDESTRYIMSNQVLANLSSLVAPVDASKVHNAAGSQYSIVRQNSKEL 509
Query: 416 LSIIKNSM----QNAANFEVIAQKLKEERMEVASE 446
+I+ + +A N V + L E + ASE
Sbjct: 510 AELIEKYLATVGHSANNENVTSFDLTEVNYDKASE 544
>gi|342880534|gb|EGU81622.1| hypothetical protein FOXB_07858 [Fusarium oxysporum Fo5176]
Length = 860
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 183/341 (53%), Gaps = 21/341 (6%)
Query: 69 QEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSV-LDFVDKDIGDVEAVKPPSLEQ 127
+E K+V N A P ++ HP ++ V + + + + E + +E
Sbjct: 197 EESLKVVPNEAGTP-------------QYQHPYEHEIVRMSYPKRVFKESEPIMYQPVET 243
Query: 128 TPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKL 187
T V+ + + E+ +LK E A+DLEH+ +RS++GL LMQISTR +D++VDTL+
Sbjct: 244 TEATFVDTYEGVLEMLEELKGAKEIAIDLEHHDFRSYVGLVSLMQISTREKDWIVDTLQP 303
Query: 188 RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLE 247
L +VF DP KV HGA D+VWLQRD G+Y+ +FDT A L SL
Sbjct: 304 WRHKLEVLNQVFTDPNVVKVFHGAYMDMVWLQRDLGLYVNGLFDTFFACEQLHYPAKSLA 363
Query: 248 YLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
YLL F +A+K+YQ ADWR+RPLP+EM+ YAR DTHYLLYIYD ++ +L + +
Sbjct: 364 YLLSKFVDFDADKQYQLADWRIRPLPEEMMYYARSDTHYLLYIYDRVRNELVAASDRGDV 423
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENS-------YLHIYGLQGAGLNAQQLAVVAGLC 360
+ ++S + YE E + Y +I+ +++Q AV L
Sbjct: 424 DKDYIGRAVEKSKEQSLSRYEHPGYDEETGEGSRGWYGYIFKNSHLAFDSEQFAVFRALW 483
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 401
+WRD AR +DEST YVL R + EIA+ P A L LL
Sbjct: 484 KWRDNTARKEDESTNYVLSTRDITEIARINPPDAKALHSLL 524
>gi|297826687|ref|XP_002881226.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
lyrata]
gi|297327065|gb|EFH57485.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
lyrata]
Length = 891
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/288 (45%), Positives = 165/288 (57%), Gaps = 23/288 (7%)
Query: 124 SLEQT-PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVV 182
SLE + + VE LKELA L FAVD E + RSFLG T L+QIST +DF+V
Sbjct: 111 SLEMSDSYVWVETELQLKELAEILAKEKVFAVDTEQHSLRSFLGFTALIQISTHEKDFLV 170
Query: 183 DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE 242
DT+ L LR VF +P KV HGAD D++WLQRDF IY+ NMFDT +A VL
Sbjct: 171 DTIVLH-DAMSILRPVFSEPNICKVFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSKP 229
Query: 243 RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 302
+ SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI D + +L +
Sbjct: 230 QRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTAELKQLA 289
Query: 303 KESENSDTP------LTEVYKRSYDVCRQLYEKEL--------LSENSYLHIYGL---QG 345
+E+S +P L E +RS C QLY KE S Y H+ G
Sbjct: 290 --TEDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAAASSIIYRHLNGHGDKSN 347
Query: 346 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 393
LNA++L V LC WRD++ R DEST YVL ++ ++ +A + PTT
Sbjct: 348 ISLNAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLACKQPTT 393
>gi|159127645|gb|EDP52760.1| exosome complex exonuclease Rrp6, putative [Aspergillus fumigatus
A1163]
Length = 764
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 179/316 (56%), Gaps = 19/316 (6%)
Query: 120 VKPPSLEQTPFK-----LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIS 174
V PP +E PF+ V+ ++ +KE+ ++LKS E A+DLEH+ S+ GL LMQIS
Sbjct: 211 VSPP-VEYQPFESTAATFVDTLEGVKEMLSELKSAKEIAIDLEHHDVHSYHGLVSLMQIS 269
Query: 175 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
TR +D+VVDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ MFDT
Sbjct: 270 TRDKDWVVDTLKPWREELQILNEVFADPGILKVLHGSSMDIIWLQRDLGLYVVGMFDTYH 329
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
A+ L + SL++LLH F A+K YQ ADWR+RPLP M YAR DTHYLLYIYD +
Sbjct: 330 AACALNYPKRSLKFLLHKFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLYIYDHL 389
Query: 295 KIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS-------YLHIYGLQGA 346
+ +L E+ D L + V ++S + Q YE+ + + Y ++Y A
Sbjct: 390 RNEL----LENSTPDHNLVDYVLEQSKNEALQRYERPVYDAATGQGQGGWYDYLYR-NPA 444
Query: 347 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 406
L+ +Q AV + +WRD +AR +DE V P L +IA+ +P L R L
Sbjct: 445 VLSKEQFAVFKAVHQWRDEVAREEDEGVQCVFPKHILFKIAQVMPLDQGTLFRTLSPVTP 504
Query: 407 YIERYMGPVLSIIKNS 422
+ +L +IK +
Sbjct: 505 IAKDRAADLLEVIKKA 520
>gi|389740502|gb|EIM81693.1| hypothetical protein STEHIDRAFT_171972 [Stereum hirsutum FP-91666
SS1]
Length = 910
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 133/396 (33%), Positives = 197/396 (49%), Gaps = 58/396 (14%)
Query: 120 VKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTED 179
+ P S +TPF V D + KL++ E AVDLE++ YR+F G CLMQIS+R ED
Sbjct: 230 ITPKSFAETPFTWVSTSIDFATMLDKLRNAQEIAVDLEYHSYRTFGGFVCLMQISSREED 289
Query: 180 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 239
++VD +LR ++ L EVF DP K+ HGA+ D+ WLQ+DF +Y+ N+FDT AS+VL
Sbjct: 290 WIVDPFELRDEMED-LNEVFTDPKIVKIFHGAESDVAWLQQDFNLYIVNLFDTFHASKVL 348
Query: 240 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
R+ L LL +C A+K YQ ADWRVRPLP EML YAR DTH+LLYIYD ++ L
Sbjct: 349 DFPRHGLASLLEMYCDFTADKRYQLADWRVRPLPQEMLEYARSDTHFLLYIYDNLRNALL 408
Query: 300 SM-------------------------PKESENSDTP------LTEVYKRSYDVCRQLYE 328
P + + P + EV RS + ++YE
Sbjct: 409 DRFLSRSQSRAQSPQSSSTPPPPSTINPSSTVTALIPPGPDGYVREVLSRSAETSLRVYE 468
Query: 329 KELLSENSYLHIYGLQGAG------LNAQQLAVVA------------GLCEWRDVIARAD 370
+E Y + G G G ++A+VA + WRD AR +
Sbjct: 469 RE------YYDVEGGSGPGGWDTMAKKWNKVALVADGPGGVQREVYRAVHAWRDRTAREE 522
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQN--AAN 428
DES YVL N + ++A++ P A L + S I R +L I+ +++ +A
Sbjct: 523 DESVRYVLANHFVFQLAERPPNDMAALLHMFHSVPPVIRRRAKELLDCIRVALKRGLSAT 582
Query: 429 FEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNV 464
+++ + +V+D++ + +P+V
Sbjct: 583 TPQTPAPIEQTPAPTPLNTPDGMVVDSTPSTVVPSV 618
>gi|70999828|ref|XP_754631.1| exosome complex exonuclease Rrp6 [Aspergillus fumigatus Af293]
gi|66852268|gb|EAL92593.1| exosome complex exonuclease Rrp6, putative [Aspergillus fumigatus
Af293]
Length = 764
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 179/316 (56%), Gaps = 19/316 (6%)
Query: 120 VKPPSLEQTPFK-----LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIS 174
V PP +E PF+ V+ ++ +KE+ ++LKS E A+DLEH+ S+ GL LMQIS
Sbjct: 211 VSPP-VEYQPFESTAATFVDTLEGVKEMLSELKSAKEIAIDLEHHDVHSYHGLVSLMQIS 269
Query: 175 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
TR +D+VVDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ MFDT
Sbjct: 270 TRDKDWVVDTLKPWREELQILNEVFADPGILKVLHGSSMDIIWLQRDLGLYVVGMFDTYH 329
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
A+ L + SL++LLH F A+K YQ ADWR+RPLP M YAR DTHYLLYIYD +
Sbjct: 330 AACALNYPKRSLKFLLHKFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLYIYDHL 389
Query: 295 KIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS-------YLHIYGLQGA 346
+ +L E+ D L + V ++S + Q YE+ + + Y ++Y A
Sbjct: 390 RNEL----LENSTPDHNLVDYVLEQSKNEALQRYERPVYDAATGQGQGGWYDYLYR-NPA 444
Query: 347 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 406
L+ +Q AV + +WRD +AR +DE V P L +IA+ +P L R L
Sbjct: 445 VLSKEQFAVFKAVHQWRDEVAREEDEGVQCVFPKHILFKIAQVMPLDQGTLFRTLSPVTP 504
Query: 407 YIERYMGPVLSIIKNS 422
+ +L +IK +
Sbjct: 505 IAKDRAADLLEVIKKA 520
>gi|296419821|ref|XP_002839490.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635651|emb|CAZ83681.1| unnamed protein product [Tuber melanosporum]
Length = 838
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 174/310 (56%), Gaps = 18/310 (5%)
Query: 122 PPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV 181
PP+ TP L E +KD++ E AVDLEH+ R+++GLTCLMQ+STR +D++
Sbjct: 236 PPTWVDTPRALQEMIKDMRRCT-------EIAVDLEHHDTRTYIGLTCLMQLSTRDDDYI 288
Query: 182 VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL 241
VDTLKLR Q+ P L E+F +P KV+HGA DI+WLQRD G+Y+ +FDT A++ L+
Sbjct: 289 VDTLKLRGQLEP-LNEIFTNPRVIKVLHGAFMDIIWLQRDLGLYIVGLFDTFYAAQALEF 347
Query: 242 ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
R L ++L + +A+K+YQ ADWR+RPLP EML YAR DTHYLLY +D M+ L
Sbjct: 348 ARFGLAHILKKYVNFDADKQYQMADWRLRPLPKEMLDYARSDTHYLLYCFDCMRNSL--- 404
Query: 302 PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA----GLNAQQLAVVA 357
E S + V ++S + + Y ++ + +G N Q V
Sbjct: 405 ---VEKSRGDVEHVLQKSKETALRRYIRDTYDAATGEGTFGWASQIIKFKFNRTQEFVFK 461
Query: 358 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLS 417
+ WRD AR +DES +V TL ++ +PT + + + + + +G ++
Sbjct: 462 AVHAWRDQAAREEDESPTFVCSRSTLGALSTAMPTDYDGVAKCIHDTNHLAKSRIGEIVE 521
Query: 418 IIKNSMQNAA 427
IK +++ A
Sbjct: 522 AIKGALEQAG 531
>gi|297739148|emb|CBI28799.3| unnamed protein product [Vitis vinifera]
Length = 935
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 202/362 (55%), Gaps = 25/362 (6%)
Query: 61 HVPTITKPQEEYKIVV-NNANQPFQHVWLQKS-EDSGRFIHPLD-NLSVLDFVDKDIGDV 117
++ T KPQ +K+V+ +N+ F+H+ L +S ++ HP + +S L + +I
Sbjct: 41 YLHTEPKPQYSFKLVLADNSYSAFKHLKLGESNSETSLHSHPYEAEISAL-LENAEIEFS 99
Query: 118 EAVKPPSLEQT-PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTR 176
+ L+ + + VE LKELA L FAVD E + RSFLG T L+QIST+
Sbjct: 100 FGTESMDLKISDSYVWVETELQLKELADVLSKQRVFAVDTEQHSLRSFLGFTALIQISTQ 159
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
ED++VDT+ L + L+ VF +P+ KV HGAD D++WLQRDF IY+ N+FDT +A
Sbjct: 160 NEDYLVDTIALHDTLD-VLQPVFANPSICKVFHGADNDVLWLQRDFHIYVVNLFDTAKAC 218
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296
VL + SL YLL +CGV NK Q DWR RPL EML YA+ D HYLLYI + +
Sbjct: 219 EVLSKPQKSLAYLLETYCGVATNKLLQREDWRQRPLSVEMLEYAQTDAHYLLYIANCLIA 278
Query: 297 KLSSMPKESENSDTP------LTEVYKRSYDVCRQLYEKEL--------LSENSYLHIYG 342
+L +SENS P + E +RS VC QLY KE+ S H+ G
Sbjct: 279 ELRQ--HDSENSCCPDDKLRFVLEASRRSNTVCLQLYIKEIEISPGESAASSIISRHLNG 336
Query: 343 LQGAGLNAQQLA---VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 399
G A L +V LC WRD++AR DES YVL ++ +I +A ++PTT ++
Sbjct: 337 QGGISSKACDLQFQDLVRRLCTWRDLMARVHDESLRYVLSDQAIIALADKVPTTQKEICT 396
Query: 400 LL 401
L+
Sbjct: 397 LI 398
>gi|121705450|ref|XP_001270988.1| exosome component 3'-5' exonuclease [Aspergillus clavatus NRRL 1]
gi|119399134|gb|EAW09562.1| exosome complex exonuclease Rrp6, putative [Aspergillus clavatus
NRRL 1]
Length = 778
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 176/313 (56%), Gaps = 18/313 (5%)
Query: 123 PSLEQTPFK-----LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRT 177
P +E PF+ V+ ++ +KE+ ++LKS E A+DLEH+ S+ GL LMQISTR
Sbjct: 218 PPVEYLPFESTTATFVDTLEGVKEMLSELKSAKEIAIDLEHHDMHSYHGLVSLMQISTRD 277
Query: 178 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 237
+D+VVDTLK + L +VF DP KV+HG+ DI+WLQRD G+Y+ MFDT A+
Sbjct: 278 KDWVVDTLKPWREDLQILNDVFADPAILKVLHGSSMDIIWLQRDLGLYVVGMFDTYHAAC 337
Query: 238 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 297
L + SL++LL F A+K YQ ADWR+RPLP M YAR DTHYLLYIYD ++ +
Sbjct: 338 ALNYPKRSLKFLLQKFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLYIYDHLRNE 397
Query: 298 LSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS-------YLHIYGLQGAGLN 349
L E+ D L + V ++S + Q YE+ + + Y ++Y A L+
Sbjct: 398 L----LENSTPDHSLIDYVSEQSKNEALQRYERPVYDAGTGQGQGGWYDYLYR-TPAVLS 452
Query: 350 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 409
+Q AV + +WRD +AR +DE V P L +IA+ +P L R L +
Sbjct: 453 KEQFAVFKAVHQWRDEVAREEDEGVQCVFPKHVLFKIAQSMPLDQGTLFRTLSPMTPIVR 512
Query: 410 RYMGPVLSIIKNS 422
+L +IK +
Sbjct: 513 DRAATLLEVIKQA 525
>gi|119195137|ref|XP_001248172.1| exosome component 3'-5' exonuclease [Coccidioides immitis RS]
gi|392862584|gb|EAS36760.2| exosome complex exonuclease Rrp6 [Coccidioides immitis RS]
Length = 766
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 144/407 (35%), Positives = 200/407 (49%), Gaps = 47/407 (11%)
Query: 52 RKEKSKVP----FHVPTITKPQEEYKIVVNN-ANQPFQHVWLQKSEDSGRFIHPLDNLSV 106
R +++ P F I KPQ +K NN A+ PF+ + QK H L L
Sbjct: 128 RASRAQFPGAHNFASSKIPKPQLSFKTRPNNHASSPFRPILRQKP-------HALIPLPP 180
Query: 107 LDFVDKDIGDVEAVKPP------------------------SLEQTPFKLVEEVKDLKEL 142
+ GDVE + P E T V ++ +K +
Sbjct: 181 VAEQTSTNGDVEQSEHPYAHEIRDCHYPASTYSSSTPQLYKPFESTTATFVNTIEGVKVM 240
Query: 143 AAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDP 202
+LKS E AVDLEH+ S+ GL CLMQISTR +D++VDTL + L EVF DP
Sbjct: 241 LEELKSAKEIAVDLEHHDAHSYHGLVCLMQISTREKDWIVDTLLPWREELQILNEVFADP 300
Query: 203 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 262
KV+HG+ D++WLQRD G+YL +FDT AS L + SL++LL F + A K+Y
Sbjct: 301 RILKVLHGSSMDVIWLQRDLGLYLVGLFDTYHASVALNYPKKSLKFLLDKFVNLEAEKQY 360
Query: 263 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE-VYKRSYD 321
Q ADWR+RPL M YAR DTHYLLYIYD ++ +L E DT L + V +S +
Sbjct: 361 QTADWRLRPLLPGMFDYARSDTHYLLYIYDNLRNELI----EKSTPDTNLIDYVQDKSKE 416
Query: 322 VCRQLYEKELLSENS------YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 375
Q YE+ + + + + + L +QLAV + WRD AR DDE
Sbjct: 417 EALQRYERPVYDAETGQGSGGWYDVLSRSPSLLKREQLAVFKAVHRWRDQTARTDDEGVQ 476
Query: 376 YVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
VL R L IA +P+ A L +L + + + +L +IK++
Sbjct: 477 SVLSKRALFAIAHGMPSDQAALLKLAIPVSPSLRKRLSELLKVIKDA 523
>gi|440292006|gb|ELP85248.1| exosome complex exonuclease RRP6, putative [Entamoeba invadens IP1]
Length = 517
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/303 (40%), Positives = 178/303 (58%), Gaps = 12/303 (3%)
Query: 122 PPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV 181
P S E TP V+ + +L L L +VD+FAVD+EH+ S+ G CLMQISTR+EDFV
Sbjct: 178 PLSFENTPLLFVQNMDELNRLIKTLNNVDQFAVDVEHHSEHSYNGFACLMQISTRSEDFV 237
Query: 182 VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL 241
VD + LR + L E F +P +KV HG D D+VWL +FG+Y+ N FD+GQA+R LKL
Sbjct: 238 VDVITLRDSIH-LLNEPFTNPKIEKVFHGCDFDMVWLSYNFGLYVVNNFDSGQAARCLKL 296
Query: 242 ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
+ SL++LL + GV A+K+YQ ADWR+RPL EM+ YAR DTHYLLYI D+M+
Sbjct: 297 QHFSLKFLLEKYVGVEADKKYQLADWRIRPLTQEMINYARGDTHYLLYICDLMR------ 350
Query: 302 PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCE 361
E + L EV +S ++C +L++ + ++ + I + + + Q L
Sbjct: 351 -NECLEQNV-LYEVQAKSNELCLRLFKPTIYNDAAVERI--AKKSWIKKSQFKAFKKLFL 406
Query: 362 WRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY-IERYMGPVLSIIK 420
RD IAR +DES ++ L I ++PT KL+ K Y +E + +++++K
Sbjct: 407 LRDKIAREEDESPHSIMSQSVLNSILSEVPTDFEKLKMACLPKIPYFVEMHSMEIINLMK 466
Query: 421 NSM 423
M
Sbjct: 467 EEM 469
>gi|339252698|ref|XP_003371572.1| exosome component 10 [Trichinella spiralis]
gi|316968157|gb|EFV52483.1| exosome component 10 [Trichinella spiralis]
Length = 827
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 114/250 (45%), Positives = 158/250 (63%), Gaps = 4/250 (1%)
Query: 142 LAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKD 201
L L S FAVDLEHN YRS+ GLTCL+QISTR D++VD + ++ L E F D
Sbjct: 265 LVNDLNSQQAFAVDLEHNSYRSYYGLTCLLQISTRDTDYIVDPFPIWHEMY-ILNEPFVD 323
Query: 202 PTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKE 261
P KVMHG+ +DI WLQRDFGIY+ N+FDT A VL++ + SL++L+ GVN +K
Sbjct: 324 PNIVKVMHGSSQDIQWLQRDFGIYVVNLFDTYHAMEVLEMPQRSLKFLVKELVGVNLDKS 383
Query: 262 YQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYD 321
YQ ADWR+RPL +ML YAR D+HYLLY +D+++ +L + + +E +D + V KRS D
Sbjct: 384 YQTADWRIRPLGSKMLAYARSDSHYLLYCWDVLRNQL--LNRGNEYNDLMMI-VLKRSSD 440
Query: 322 VCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNR 381
C Q+Y+K+ +E + L+ +Q + L WRD +AR DES Y++ N
Sbjct: 441 TCLQVYKKKFPNEFELRKLESKFPFNLDNRQKYALRMLYYWRDGVARITDESVYYIMRNE 500
Query: 382 TLIEIAKQLP 391
TL +A +LP
Sbjct: 501 TLRNLAAKLP 510
>gi|322700217|gb|EFY91973.1| exosome complex exonuclease Rrp [Metarhizium acridum CQMa 102]
Length = 831
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 129/365 (35%), Positives = 201/365 (55%), Gaps = 31/365 (8%)
Query: 65 ITKPQEEYKIVVNN----------ANQPFQHVWLQKS------ED-SGRFIHP----LDN 103
ITKPQ ++ +N AN+P V L++S ED + ++ HP + N
Sbjct: 140 ITKPQAMFEKKPDNFPTGPWKPILANKPHATVSLEQSLLTAPGEDGTAQYKHPYETEISN 199
Query: 104 LSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRS 163
+ ++V + + + P S + T V+ + + E+ +L+ E AVDLEH+ +R+
Sbjct: 200 MKYPEWVFQKRDPMPSQPPDSTKAT---WVDTYEGVLEMLQELRKAKEIAVDLEHHDFRT 256
Query: 164 FLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFG 223
+ GL CLMQ+STR +D++VDTL+ L +VF +P+ KV HGA D+VWLQRD G
Sbjct: 257 YTGLVCLMQVSTRDQDWIVDTLQPWRHKLEVLNDVFANPSIVKVFHGAYMDMVWLQRDLG 316
Query: 224 IYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARED 283
+Y+ +FDT A +L SL +LL F G +A+K+YQ ADWR+RP+P+EML YAR D
Sbjct: 317 LYVNGLFDTYFACDLLNYPGKSLAFLLSKFVGFDADKQYQLADWRIRPIPEEMLYYARSD 376
Query: 284 THYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS------- 336
THYLLYI+D ++ +L +S+ + + +RS ++ +E +E +
Sbjct: 377 THYLLYIFDNVRNELIEASDKSDPEKDYINQALERSRELALSRHENPDYNETTGEGARGW 436
Query: 337 YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 396
Y +++ LN +Q ++ L +WRD AR +DES +VL + EIA+ P
Sbjct: 437 YNYVFKHSHLALNGEQFSIFKALWKWRDETARQEDESPNFVLGATNVTEIARVNPPDVKA 496
Query: 397 LRRLL 401
L LL
Sbjct: 497 LHSLL 501
>gi|225447009|ref|XP_002268685.1| PREDICTED: uncharacterized protein LOC100261955 [Vitis vinifera]
Length = 936
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 144/360 (40%), Positives = 202/360 (56%), Gaps = 23/360 (6%)
Query: 61 HVPTITKPQEEYKIVV-NNANQPFQHVWLQKS-EDSGRFIHPLD-NLSVLDFVDKDIGDV 117
++ T KPQ +K+V+ +N+ F+H+ L +S ++ HP + +S L + +I
Sbjct: 41 YLHTEPKPQYSFKLVLADNSYSAFKHLKLGESNSETSLHSHPYEAEISAL-LENAEIEFS 99
Query: 118 EAVKPPSLEQT-PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTR 176
+ L+ + + VE LKELA L FAVD E + RSFLG T L+QIST+
Sbjct: 100 FGTESMDLKISDSYVWVETELQLKELADVLSKQRVFAVDTEQHSLRSFLGFTALIQISTQ 159
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
ED++VDT+ L + L+ VF +P+ KV HGAD D++WLQRDF IY+ N+FDT +A
Sbjct: 160 NEDYLVDTIALHDTLD-VLQPVFANPSICKVFHGADNDVLWLQRDFHIYVVNLFDTAKAC 218
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296
VL + SL YLL +CGV NK Q DWR RPL EML YA+ D HYLLYI + +
Sbjct: 219 EVLSKPQKSLAYLLETYCGVATNKLLQREDWRQRPLSVEMLEYAQTDAHYLLYIANCLIA 278
Query: 297 KLSSMPKESENSDTP------LTEVYKRSYDVCRQLYEKEL--------LSENSYLHIYG 342
+L +SENS P + E +RS VC QLY KE+ S H+ G
Sbjct: 279 ELRQ--HDSENSCCPDDKLRFVLEASRRSNTVCLQLYIKEIEISPGESAASSIISRHLNG 336
Query: 343 LQGAGLNAQQLA-VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 401
G A L +V LC WRD++AR DES YVL ++ +I +A ++PTT ++ L+
Sbjct: 337 QGGISSKACDLQDLVRRLCTWRDLMARVHDESLRYVLSDQAIIALADKVPTTQKEICTLI 396
>gi|302833517|ref|XP_002948322.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f.
nagariensis]
gi|300266542|gb|EFJ50729.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f.
nagariensis]
Length = 191
Score = 219 bits (558), Expect = 5e-54, Method: Composition-based stats.
Identities = 101/170 (59%), Positives = 125/170 (73%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L + ++L++ +E AVDLEH+ +RSF G TCLMQISTRT D+VVDTL LR Q+GP L V
Sbjct: 9 LAGMVSELEAAEELAVDLEHHSHRSFQGFTCLMQISTRTTDYVVDTLALRNQLGPALARV 68
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNA 258
F DP KV HGAD D+ WLQRDF ++L NMFDTGQA+RVL L L YLL CGV A
Sbjct: 69 FADPRVVKVFHGADSDVDWLQRDFSLFLVNMFDTGQAARVLGLPSFGLAYLLESICGVQA 128
Query: 259 NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
+K YQ ADWRVRPL ML YAR DTHYLLY+YD ++ +L+++P + +S
Sbjct: 129 DKRYQMADWRVRPLSPPMLHYARCDTHYLLYVYDKLREQLAALPDQRVSS 178
>gi|356515280|ref|XP_003526329.1| PREDICTED: uncharacterized protein LOC100791485 [Glycine max]
Length = 873
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 138/363 (38%), Positives = 199/363 (54%), Gaps = 27/363 (7%)
Query: 50 KDRKEKSKVPFHVPTITKPQEEY--KIVVNNANQPFQHVWLQKSEDSGRFI------HPL 101
+ RK+ P ++ + KPQ ++V +N+ PF+H+ +E S HP
Sbjct: 30 RRRKQHKSSPCYLHSEQKPQCAAFKRVVADNSYTPFKHLINDDAEFSCFLTENASNSHPY 89
Query: 102 DNLSVLDFVDKDIGDVE-AVKPPSLE-QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHN 159
+ + + + ++E + LE + + V LKEL L FAVD E +
Sbjct: 90 EA-EITALLKNPLPEIELGTEIADLEMKDSYVWVHTEMQLKELVDVLSEERFFAVDTEQH 148
Query: 160 QYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQ 219
RSFLG T L+QISTR +D++VDT+ L +G LR +F +P+ KV HGAD DIVWLQ
Sbjct: 149 SLRSFLGFTALVQISTREKDYLVDTIALHDFMG-ILRPIFANPSICKVFHGADNDIVWLQ 207
Query: 220 RDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRY 279
RDF IY+ N+FDT +A VL + SL YLL +CGV NK Q DWR RPL EM+ Y
Sbjct: 208 RDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVHY 267
Query: 280 AREDTHYLLYIYDIMKIKLSSMPKESENSDTP---LTEVYKRSYDVCRQLYEKELLS--- 333
AR D HYLLYI + + +L + E+ +SD + E +RS +C QL++KE+ +
Sbjct: 268 ARTDAHYLLYIANCLINELKQLDNENSSSDDKFHFVLEASRRSNMICLQLFKKEIEASPG 327
Query: 334 ENSYLHIY-------GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
E+S L ++ G AQ +V LC WRD++AR DES YVL ++ ++ +
Sbjct: 328 ESSALSLFSRRVSSHGFPSISNEAQN--IVRQLCTWRDLMARIHDESLKYVLSDQAIVAL 385
Query: 387 AKQ 389
A Q
Sbjct: 386 ASQ 388
>gi|115396098|ref|XP_001213688.1| exosome component 3'-5' exonuclease [Aspergillus terreus NIH2624]
gi|114193257|gb|EAU34957.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 761
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 173/316 (54%), Gaps = 14/316 (4%)
Query: 116 DVEAVKPPSLEQTPFK-----LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCL 170
D V+ P ++ PF+ V+ V+ +KE+ +LK+ E A+DLEH+ S+ GL L
Sbjct: 206 DPTYVESPPVDYLPFESTTATFVDTVEGVKEMLGELKAAKEIAIDLEHHDVHSYHGLVSL 265
Query: 171 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 230
MQISTR +D+VVDTLK + L EVF DP+ KV+HG+ DI+WLQRD G+Y+ MF
Sbjct: 266 MQISTREKDWVVDTLKPWREELQMLNEVFTDPSILKVLHGSSMDIIWLQRDLGLYIVGMF 325
Query: 231 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 290
DT A+ L + SL+YLL F A+K YQ ADWR+RPLP M YAR DTHYLL+I
Sbjct: 326 DTYHAACALNYPKRSLKYLLQKFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLHI 385
Query: 291 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------NSYLHIYGLQ 344
YD ++ +L + S +++ + V +RS Q YE+ + +
Sbjct: 386 YDHLRNELI---RNSTSNNNLIDYVLERSKTEALQRYERPVYDAALGQGPGGWYDYLSRS 442
Query: 345 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 404
++ +Q AV + +WRD +AR +DE V P L +A+ +P L R L
Sbjct: 443 SVVVSKEQFAVFKAVHQWRDQVAREEDEGVQCVFPKHVLFRVAQVMPLDLGTLFRTLSPV 502
Query: 405 HSYIERYMGPVLSIIK 420
+ + +L +IK
Sbjct: 503 TTIAKERASELLEVIK 518
>gi|302916517|ref|XP_003052069.1| hypothetical protein NECHADRAFT_92603 [Nectria haematococca mpVI
77-13-4]
gi|256733008|gb|EEU46356.1| hypothetical protein NECHADRAFT_92603 [Nectria haematococca mpVI
77-13-4]
Length = 833
Score = 218 bits (556), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 128/345 (37%), Positives = 192/345 (55%), Gaps = 29/345 (8%)
Query: 69 QEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDN-LSVLDFVDKDIGDVEAVKPPSLEQ 127
+E KIV N + P ++ HP + ++ + + + + E V ++
Sbjct: 174 EESLKIVPNESGAP-------------QYQHPYEREIASMVYPKRVYKEAEPVMYQPVDT 220
Query: 128 TPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKL 187
T V+ + + E+ +LK E AVDLEH+ +RS++GL LMQISTR +D++VDTL+
Sbjct: 221 TQATWVDTYEGVLEMLKELKKAKEIAVDLEHHDFRSYIGLVSLMQISTREKDWIVDTLQP 280
Query: 188 RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLE 247
L EVF +P KV HGA D+VWLQRD G+Y+ +FDT A L SL
Sbjct: 281 WRHKLEVLNEVFTNPKIIKVFHGAYMDMVWLQRDLGLYVNGLFDTFFACDQLHYPAKSLA 340
Query: 248 YLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
+LL F +A+K+YQ ADWR+RP+P+EM+ YAR DTHYLLYIYD ++ +L + +S+
Sbjct: 341 FLLSKFVDFDADKQYQLADWRIRPIPEEMMYYARSDTHYLLYIYDKVRNELVATSDKSK- 399
Query: 308 SDTPLTEVYKRSYDVCRQL---------YEKEL--LSENSYLHIYGLQGAGLNAQQLAVV 356
P T + +R+ + R+L Y++E S Y +++ L+++Q AV
Sbjct: 400 ---PETNLIERALEKSRELSLSRYENPGYDEETGEGSRGWYGYVFKNSHMALDSEQFAVF 456
Query: 357 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 401
+ +WRD ARA+DE+ YVL R + EIA+ P A L LL
Sbjct: 457 KAVWKWRDDTARAEDENPNYVLSTRDITEIARLNPPDAKALHSLL 501
>gi|367017047|ref|XP_003683022.1| hypothetical protein TDEL_0G04440 [Torulaspora delbrueckii]
gi|359750685|emb|CCE93811.1| hypothetical protein TDEL_0G04440 [Torulaspora delbrueckii]
Length = 735
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/282 (43%), Positives = 167/282 (59%), Gaps = 27/282 (9%)
Query: 126 EQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTL 185
E T V+ ++ LK + + LKSV E AVDLEH+ YRS+ G+ CLMQISTR D+++DT+
Sbjct: 207 ETTEALWVDNIEVLKTMISDLKSVTEIAVDLEHHDYRSYYGIVCLMQISTRERDYLIDTI 266
Query: 186 KLR--VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLER 243
LR +Q+ L EVF +P KV HGA DI+WLQRD G+Y+ ++FDT ASR + L R
Sbjct: 267 ALRDDLQI---LNEVFANPKILKVFHGAFMDIIWLQRDLGLYVVSLFDTFHASRAIGLPR 323
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD------IMKIK 297
+SL YLL F +K+YQ ADWR+RPL M YAR DTH+LL IYD I + K
Sbjct: 324 HSLAYLLEKFANFKTSKKYQLADWRLRPLSKAMNAYARADTHFLLNIYDQLRNTLIEQNK 383
Query: 298 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI-------YGLQGAGLNA 350
L+ + ES N V KR ++ + + S Y I + ++
Sbjct: 384 LAGVLAESRN-------VAKRRFEYSK--FRPIAPSPTVYCPIDKPDPWKVLMFQYSISP 434
Query: 351 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 392
+ +V L +WRD IAR DDES YV+PN+ L+E+A+Q PT
Sbjct: 435 NREELVKKLYDWRDTIARRDDESPRYVMPNQLLVELARQAPT 476
>gi|119491955|ref|XP_001263472.1| exosome component 3'-5' exonuclease [Neosartorya fischeri NRRL 181]
gi|119411632|gb|EAW21575.1| exosome complex exonuclease Rrp6, putative [Neosartorya fischeri
NRRL 181]
Length = 765
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 129/323 (39%), Positives = 178/323 (55%), Gaps = 27/323 (8%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
E T V+ ++ +KE+ ++LKS E A+DLEH+ S+ GL LMQISTR +D+VVDT
Sbjct: 220 FESTAATFVDTLEGVKEMLSELKSAKEIAIDLEHHDVHSYHGLVSLMQISTRDKDWVVDT 279
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LK + L EVF DP KV+HG+ DI+WLQRD G+Y+ MFDT A+ L +
Sbjct: 280 LKPWREELQILNEVFADPGILKVLHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKR 339
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL F A+K YQ ADWR+RPLP M YAR DTHYLLYIYD ++ +L E
Sbjct: 340 SLKFLLQKFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLYIYDHLRNEL----LE 395
Query: 305 SENSDTPLTE-VYKRSYDVCRQLYEKELLSENS-------YLHIYGLQGAGLNAQQLAVV 356
+ D L + V ++S + Q YE+ + + Y ++Y A L+ +Q AV
Sbjct: 396 NSTPDHNLVDYVLEQSKNEALQRYERPVYDAATGQGQGGWYDYLYR-NPAVLSKEQFAVF 454
Query: 357 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVL 416
+ +WRD +AR +DE V P L +IA+ +P L R L PV
Sbjct: 455 KAVHQWRDEVAREEDEGVQCVFPKHILFKIAQVMPLDQGTLFRTL-----------SPVT 503
Query: 417 SIIKNSMQNAANFEVIAQKLKEE 439
I K+ AA+ + QK K E
Sbjct: 504 PIAKD---RAADLLEVIQKAKIE 523
>gi|396483292|ref|XP_003841672.1| similar to exosome complex exonuclease Rrp6 [Leptosphaeria maculans
JN3]
gi|312218247|emb|CBX98193.1| similar to exosome complex exonuclease Rrp6 [Leptosphaeria maculans
JN3]
Length = 783
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 171/315 (54%), Gaps = 16/315 (5%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
E T V+ + L + A+LK+ E AVDLEH+ RS++G+ LMQISTR +D++VDT
Sbjct: 210 FESTTAIFVDTPEALASMLAELKTAKEIAVDLEHHDNRSYIGIVSLMQISTRNQDWIVDT 269
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LK + L EVF +P KV+HGA DI+WLQRD G+Y+ +FDT A+R L
Sbjct: 270 LKPWRRKLECLNEVFANPDIIKVLHGAYMDIMWLQRDLGLYVVGLFDTYHAARSLGYPGA 329
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL YLL F G A K+YQ ADWR+RPL E+ YAR DTH+LLYI+D M+ +L
Sbjct: 330 SLAYLLDRFIGFKAQKQYQIADWRIRPLGKELFEYARADTHFLLYIFDNMRNELVEKSDL 389
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-----------LNAQQL 353
S + +V ++S + Q YE + E +GL G QQ
Sbjct: 390 SNVEKNKVRDVLEKSKETALQRYEHPVYDEK-----FGLGTGGWYKLISRTPVQFTPQQF 444
Query: 354 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 413
AV + +WRD ++R +DES +++PN + +A+ +P+ + L ++ I
Sbjct: 445 AVFRAVHQWRDELSRQEDESPLFIMPNHAVFSVARAMPSDKSALYNAVQHVSHIIRARAD 504
Query: 414 PVLSIIKNSMQNAAN 428
++ +I + Q N
Sbjct: 505 DLVRVITKAKQEGVN 519
>gi|452837795|gb|EME39736.1| hypothetical protein DOTSEDRAFT_138360 [Dothistroma septosporum
NZE10]
Length = 784
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/276 (40%), Positives = 161/276 (58%), Gaps = 10/276 (3%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
E T V+ L E+ +LK E A+DLEH+ R+++G+ LMQISTR +D+VVDT
Sbjct: 216 FESTTATFVDTEDALYEMLEELKLAKEIAIDLEHHDSRTYIGIVSLMQISTRDKDWVVDT 275
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+ + L EVF DP+ KV+HGA DIVWLQRD G+Y+ +FDT A+R L
Sbjct: 276 LQPWRRKMQCLNEVFVDPSIVKVLHGAYMDIVWLQRDLGLYIVGLFDTHYAARALGYTGG 335
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK---IKLSSM 301
SL +LL F +A K+YQ ADWR+RPLP E+ YAR DTH+LLYI+D M+ ++ S
Sbjct: 336 SLAFLLKKFIDFDAQKQYQMADWRIRPLPQELFDYARSDTHFLLYIFDNMRNELVQRSDF 395
Query: 302 PKESENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGLQGAGLNAQQLAV 355
K D + +V ++S +V Q YE + + + A + +Q +V
Sbjct: 396 SKPDHEGDK-VWDVLQKSNEVALQKYEHPIYDAELGQGAGGWYKMLARTPALFSKEQFSV 454
Query: 356 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ +WRD +AR D+ST YV+PN ++ IAK +P
Sbjct: 455 FRAVHKWRDDVAREQDDSTHYVMPNHQVLSIAKAMP 490
>gi|145352778|ref|XP_001420714.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580949|gb|ABO99007.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 176
Score = 217 bits (552), Expect = 2e-53, Method: Composition-based stats.
Identities = 101/170 (59%), Positives = 124/170 (72%)
Query: 126 EQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTL 185
E ++VE V L+ELAA L+ EFAVDLEH+ YRSF G TCLMQISTR DFVVD L
Sbjct: 3 EDHALQVVETVDALEELAAHLEECKEFAVDLEHHSYRSFKGFTCLMQISTRERDFVVDVL 62
Query: 186 KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS 245
LR V L + F D K KVMHGAD D+ WLQ+DFG+++ +FDTGQA+RVL+L
Sbjct: 63 ALRSHVRDALGKAFADADKLKVMHGADNDVQWLQKDFGMFVSCLFDTGQAARVLELPSKG 122
Query: 246 LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
L YLLHH+CG+ ANK +Q ADWR+RPL EM+ YAR DTH+LLY++D +K
Sbjct: 123 LAYLLHHYCGIKANKRFQLADWRLRPLTKEMVEYARGDTHHLLYVHDRLK 172
>gi|402223082|gb|EJU03147.1| hypothetical protein DACRYDRAFT_50127, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 555
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/275 (42%), Positives = 158/275 (57%), Gaps = 9/275 (3%)
Query: 122 PPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV 181
P S E TPF+ V L ++ KLK+ E AVDLEH+ YRS+ G+ CLMQ+STR D+V
Sbjct: 256 PKSFEDTPFEWVGTPDRLAQMLEKLKAAKEIAVDLEHHDYRSYRGIVCLMQLSTREADWV 315
Query: 182 VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL 241
VDTL LR ++ L EVF D KV HGA DI WLQRDF +Y+ N+FDT AS+ L
Sbjct: 316 VDTLALREELE-VLNEVFADSNIVKVFHGATMDINWLQRDFNLYIVNLFDTYYASKALNF 374
Query: 242 ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
SL +LL +C A+K +Q ADWR+RPLP EM+ YAR DTH+LLY+YD ++ + +
Sbjct: 375 PAFSLAFLLDLYCEFKADKRFQLADWRIRPLPQEMMDYARSDTHFLLYVYDQVR---NDL 431
Query: 302 PKESENSDTPLTEVYKRSYDVCRQLYEKELL-----SENSYLHIYGLQGAGLNAQQLAVV 356
K E + +V+ S D Q++E E + ++ +LAV
Sbjct: 432 LKRVEGGPDLVEKVFDLSKDTALQVWEPERYDPAGNGPGGWQNLTRKWNKHFMGSKLAVF 491
Query: 357 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ WRD +AR +DE YVL N + +A+ P
Sbjct: 492 KAVYAWRDRVAREEDEGLRYVLTNPQMFALAENCP 526
>gi|261206146|ref|XP_002627810.1| exosome component 3'-5' exonuclease [Ajellomyces dermatitidis
SLH14081]
gi|239592869|gb|EEQ75450.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis
SLH14081]
Length = 814
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 170/304 (55%), Gaps = 9/304 (2%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
E T V+ ++ + + A+LK E A+DLEH+ S+ GL CLMQISTR +D++VDT
Sbjct: 224 FETTTATFVDTLEGVHSMLAELKQTTEIAIDLEHHDTHSYHGLVCLMQISTREKDWIVDT 283
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LK + L EVF DP KV+HG+ D++WLQRD G+YL +FDT A+ L +
Sbjct: 284 LKPWREELQILNEVFADPKIIKVLHGSTMDVIWLQRDLGLYLVGLFDTYHAAVALNYPKR 343
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYIYD ++ +S+ +
Sbjct: 344 SLKFLLEKFVNFQAEKKYQMADWRLRPLLPGMFDYARSDTHYLLYIYDQIR---NSLVEH 400
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ------GAGLNAQQLAVVAG 358
S + + V +RS Q YE+ + + + G Q + + +Q AV
Sbjct: 401 STPDNNLIAYVLERSKQEALQRYERPVYNAETGQGSGGWQDMLIRNSSLFSREQFAVFRA 460
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 418
+ +WRD IAR++DE YVL ++L +IA +P A L R + + ++ +
Sbjct: 461 VHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPASLLRTISPVSPLVRARASELVQV 520
Query: 419 IKNS 422
IK +
Sbjct: 521 IKQA 524
>gi|410081706|ref|XP_003958432.1| hypothetical protein KAFR_0G02660 [Kazachstania africana CBS 2517]
gi|372465020|emb|CCF59297.1| hypothetical protein KAFR_0G02660 [Kazachstania africana CBS 2517]
Length = 735
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 177/321 (55%), Gaps = 21/321 (6%)
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRT 177
E + S +T V+ V+ L + +K E A+DLEH+ YR++ G+ CLMQISTR
Sbjct: 201 EPIPSKSWSETEGVWVDNVESLNHMLNDIKKYTEIAIDLEHHDYRTYYGIVCLMQISTRE 260
Query: 178 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 237
D++VDT+ LR + L EVF DP+ KV+HGA DI+WLQRD G+Y+ ++FDT ASR
Sbjct: 261 TDYLVDTIALRNDLK-VLNEVFTDPSVVKVLHGAFMDIIWLQRDLGLYIVSLFDTFHASR 319
Query: 238 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 297
L R+SL YLL F +K+YQ ADWRVRPL M YAR DTH+LL IYD ++ +
Sbjct: 320 ALGFPRHSLAYLLEEFANFKTSKKYQLADWRVRPLSKAMTAYARADTHFLLNIYDQLRNR 379
Query: 298 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL-----SENSYLHIYG-------LQG 345
L K L V S +V ++ +E S N Y + +
Sbjct: 380 LVETNK--------LVGVLNESRNVAKRRFEYSKFRPRVPSPNVYSALEKEDPWRTLMFQ 431
Query: 346 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 405
+ +++ ++ GL EWRD+IAR DDES Y++PN+ ++ + PT A + +
Sbjct: 432 YNIPSEREDLLKGLFEWRDMIARRDDESPRYIMPNQLMVTLVAYTPTDPAGVISASQVVT 491
Query: 406 SYIERYMGPVLSIIKNSMQNA 426
Y+ + ++IKN++ A
Sbjct: 492 DYVRSNSKIIANLIKNALTRA 512
>gi|239610958|gb|EEQ87945.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis ER-3]
gi|327351664|gb|EGE80521.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis ATCC
18188]
Length = 814
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 170/304 (55%), Gaps = 9/304 (2%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
E T V+ ++ + + A+LK E A+DLEH+ S+ GL CLMQISTR +D++VDT
Sbjct: 224 FETTTATFVDTLEGVHSMLAELKQTTEIAIDLEHHDTHSYHGLVCLMQISTREKDWIVDT 283
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LK + L EVF DP KV+HG+ D++WLQRD G+YL +FDT A+ L +
Sbjct: 284 LKPWREELQILNEVFADPKIIKVLHGSTMDVIWLQRDLGLYLVGLFDTYHAAVALNYPKR 343
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYIYD ++ +S+ +
Sbjct: 344 SLKFLLEKFVNFQAEKKYQMADWRLRPLLPGMFDYARSDTHYLLYIYDQIR---NSLVEH 400
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ------GAGLNAQQLAVVAG 358
S + + V +RS Q YE+ + + + G Q + + +Q AV
Sbjct: 401 STPDNNLIAYVLERSKQEALQRYERPVYNAETGQGSGGWQDMLIRNSSLFSREQFAVFRA 460
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 418
+ +WRD IAR++DE YVL ++L +IA +P A L R + + ++ +
Sbjct: 461 VHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPASLLRTISPVSPLVRARASELVQV 520
Query: 419 IKNS 422
IK +
Sbjct: 521 IKQA 524
>gi|406699611|gb|EKD02812.1| hypothetical protein A1Q2_02887 [Trichosporon asahii var. asahii
CBS 8904]
Length = 906
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 171/315 (54%), Gaps = 34/315 (10%)
Query: 120 VKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTED 179
++P S E TPF+ ++ + L L LK E AVDLEH+ RS+ G TCLMQISTR D
Sbjct: 306 IRPKSFEDTPFEFIDTPEQLAALTETLKKAKEIAVDLEHHNQRSYYGFTCLMQISTREGD 365
Query: 180 FVVDTLKLRVQVGPY-LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 238
+++DTL LR ++ + L VF DP+ KV HGAD DIVWLQ DF IY+ N+FDT A++V
Sbjct: 366 WIIDTLALRAELREHKLGHVFADPSVVKVFHGADSDIVWLQEDFDIYIVNLFDTYHATKV 425
Query: 239 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298
L+ + SL LL +C +K YQ ADWR+RP+PDEM++YAR DTH+LL+IYD ++ L
Sbjct: 426 LEFPKFSLASLLQLYCDFEPDKRYQMADWRIRPIPDEMMKYARSDTHFLLFIYDNLRNAL 485
Query: 299 ----SSMPKESENSDTP-------LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG 347
S P S TP + +V S + +LY+++ ++G G
Sbjct: 486 IARASRTPSPSVEGQTPKPNPQRAMRKVLDLSSETALKLYQRDGYDP--------VKGQG 537
Query: 348 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 407
+N G + + D V+ LI+++ P A+ L R L + +
Sbjct: 538 MN--------GWANLSKKLGKKD------VMKEEVLIQLSHLRPNNASVLARTLVHQSAE 583
Query: 408 IERYMGPVLSIIKNS 422
+ +IKN+
Sbjct: 584 AYARADEIAEVIKNA 598
>gi|401887667|gb|EJT51646.1| hypothetical protein A1Q1_07058 [Trichosporon asahii var. asahii
CBS 2479]
Length = 906
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 171/315 (54%), Gaps = 34/315 (10%)
Query: 120 VKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTED 179
++P S E TPF+ ++ + L L LK E AVDLEH+ RS+ G TCLMQISTR D
Sbjct: 306 IRPKSFEDTPFEFIDTPEQLAALTETLKKAKEIAVDLEHHNQRSYYGFTCLMQISTREGD 365
Query: 180 FVVDTLKLRVQVGPY-LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 238
+++DTL LR ++ + L VF DP+ KV HGAD DIVWLQ DF IY+ N+FDT A++V
Sbjct: 366 WIIDTLALRAELREHKLGHVFADPSVVKVFHGADSDIVWLQEDFDIYIVNLFDTYHATKV 425
Query: 239 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298
L+ + SL LL +C +K YQ ADWR+RP+PDEM++YAR DTH+LL+IYD ++ L
Sbjct: 426 LEFPKFSLASLLQLYCDFEPDKRYQMADWRIRPIPDEMMKYARSDTHFLLFIYDNLRNAL 485
Query: 299 ----SSMPKESENSDTP-------LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG 347
S P S TP + +V S + +LY+++ ++G G
Sbjct: 486 IARASRTPSPSVEGQTPKPNPQRAMRKVLDLSSETALKLYQRDGYDP--------VKGQG 537
Query: 348 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 407
+N G + + D V+ LI+++ P A+ L R L + +
Sbjct: 538 MN--------GWANLSKKLGKKD------VMKEEVLIQLSHLRPNNASVLARTLVHQSAE 583
Query: 408 IERYMGPVLSIIKNS 422
+ +IKN+
Sbjct: 584 AYARADEIAEVIKNA 598
>gi|449453692|ref|XP_004144590.1| PREDICTED: uncharacterized protein LOC101204374 [Cucumis sativus]
Length = 877
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 136/348 (39%), Positives = 191/348 (54%), Gaps = 19/348 (5%)
Query: 67 KPQEEYK-IVVNNANQPFQHVWLQKSE---DSGRFIHPLDN--LSVLDFVDKDIGDVEAV 120
KPQ +K ++ +N+ F+H+ L ++ ++ HP ++ LS+L+ + +
Sbjct: 45 KPQYAFKRVLADNSYSAFKHLKLNMNKGIYNNDVNSHPYESEILSLLENSSPEFNFISER 104
Query: 121 KPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDF 180
+L T + VE V L+EL L FAVD E + RSFLG T L+QIST ED+
Sbjct: 105 TDLTLSDT-YAWVETVSQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHKEDY 163
Query: 181 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 240
+VDT+ L + LR VF + KV HGAD DI+WLQRDF IY+ N+FDT +A VL
Sbjct: 164 LVDTIALHDSMN-LLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLS 222
Query: 241 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300
+ SL YLL +CGV NK Q DWR RPLP +M++YAR D HYLLYI + + ++L
Sbjct: 223 KPQKSLAYLLETYCGVATNKMLQREDWRQRPLPADMVQYARTDAHYLLYIANCLLVELKQ 282
Query: 301 MPKESENSD--TPLTEVYKRSYDVCRQLYEKEL--------LSENSYLHIYGLQGAGL-N 349
+ + S D L E +RS C QLY KE S H+ G+ L +
Sbjct: 283 VNENSSTDDKFNFLLEASRRSNMTCLQLYSKETEGSPGESAASSIWSRHLNSQGGSALIS 342
Query: 350 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
+ V LC WRD++AR DES YVL ++ ++ IA Q+P +L
Sbjct: 343 CKTQDRVRRLCAWRDLMARVHDESLRYVLSDQAIVAIAIQVPKNTGEL 390
>gi|449493231|ref|XP_004159228.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101225221 [Cucumis sativus]
Length = 877
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 136/348 (39%), Positives = 191/348 (54%), Gaps = 19/348 (5%)
Query: 67 KPQEEYK-IVVNNANQPFQHVWLQKSE---DSGRFIHPLDN--LSVLDFVDKDIGDVEAV 120
KPQ +K ++ +N+ F+H+ L ++ ++ HP ++ LS+L+ + +
Sbjct: 45 KPQYAFKRVLADNSYSAFKHLKLNMNKGIYNNDVNSHPYESEILSLLENSSPEFNFISER 104
Query: 121 KPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDF 180
+L T + VE V L+EL L FAVD E + RSFLG T L+QIST ED+
Sbjct: 105 TDLTLSDT-YAWVETVSQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHKEDY 163
Query: 181 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 240
+VDT+ L + LR VF + KV HGAD DI+WLQRDF IY+ N+FDT +A VL
Sbjct: 164 LVDTIALHDSLN-LLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLS 222
Query: 241 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300
+ SL YLL +CGV NK Q DWR RPLP +M++YAR D HYLLYI + + ++L
Sbjct: 223 KPQKSLAYLLETYCGVATNKMLQREDWRQRPLPADMVQYARTDAHYLLYIANCLLVELKQ 282
Query: 301 MPKESENSD--TPLTEVYKRSYDVCRQLYEKEL--------LSENSYLHIYGLQGAGL-N 349
+ + S D L E +RS C QLY KE S H+ G+ L +
Sbjct: 283 VNENSSTDDKFNFLLEASRRSNMTCLQLYSKETEGSPGESAASSIWSRHLNSQGGSALIS 342
Query: 350 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
+ V LC WRD++AR DES YVL ++ ++ IA Q+P +L
Sbjct: 343 CKTQDRVRRLCAWRDLMARVHDESLRYVLSDQAIVAIAIQVPKNTGEL 390
>gi|169767462|ref|XP_001818202.1| exosome component 3'-5' exonuclease [Aspergillus oryzae RIB40]
gi|83766057|dbj|BAE56200.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871959|gb|EIT81108.1| exosome 3'-5' exoribonuclease [Aspergillus oryzae 3.042]
Length = 760
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 153/454 (33%), Positives = 222/454 (48%), Gaps = 38/454 (8%)
Query: 126 EQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTL 185
E T V+ ++ +KE+ +LKS E A+DLEH+ S+ GL LMQISTR +D+VVDTL
Sbjct: 216 ESTTATFVDTLEGVKEMLEELKSAKEIAIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTL 275
Query: 186 KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS 245
K + L EVF DP+ KV HG+ DI+WLQRD G+Y+ MFDT A+ L + S
Sbjct: 276 KPWREELQMLNEVFADPSILKVFHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKRS 335
Query: 246 LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES 305
L++LL F A+K YQ ADWR+RP+P+ M YAR DTHYLL+I+D ++ +L
Sbjct: 336 LKFLLQKFVNFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHIFDHLRNEL------I 389
Query: 306 ENSDTP----LTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQGAGLNAQQLAV 355
ENS TP + V ++S D Q +E+ + + A L+ +Q AV
Sbjct: 390 ENS-TPENNLIDYVLEKSKDEALQRFERSPYDAATGQGPGGWYDYLSRNPAVLSKEQFAV 448
Query: 356 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPV 415
+ +WRD +AR +DE V P L ++A +P L R L + +
Sbjct: 449 FKAVHQWRDAVAREEDEGVQCVFPKHVLFKVAHAMPLDLGTLFRTLSPVTPIAKDRAADL 508
Query: 416 LSIIKNSMQNAAN----FEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDG 471
L++IKN+ A+ +V + + R A+E + LV P R V
Sbjct: 509 LAVIKNAKIEGADGPEWRDVYVKPTRAGRSVPATETEQGLVTPPIGEENFPTAARCEVSQ 568
Query: 472 V-DALVGTTMP-HPPAYT--------QLKQEPPKVGSSVAELDRNGLGSFAHPGEAIAS- 520
A++ T P PP Y+ +L P + +V+E GS A P +
Sbjct: 569 FWGAVLDTREPLTPPEYSAVASAEALRLSLPLPPMPRTVSEARDKLAGSAAKPAPPKPTP 628
Query: 521 ------ENKEATHISTLSSSGQSRDLNACKSPSP 548
E KE I T+ G R + ++PSP
Sbjct: 629 APVEMPEEKEENKIFTVKGLGGPRKRKSEEAPSP 662
>gi|401623674|gb|EJS41765.1| rrp6p [Saccharomyces arboricola H-6]
Length = 733
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/301 (39%), Positives = 173/301 (57%), Gaps = 25/301 (8%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L+ + LK+V E AVDLEH+ YRS+ G+ CLMQ+STR +D++VDT++LR + L EV
Sbjct: 222 LESMLNDLKNVHEIAVDLEHHDYRSYYGIVCLMQVSTRKKDYLVDTIELRENLH-ILNEV 280
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNA 258
F DP+ KV HGA DI+WLQRD G+Y+ ++FDT AS+ + L R+SL YLL +F
Sbjct: 281 FTDPSIIKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASKAIGLPRHSLAYLLENFANFKT 340
Query: 259 NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKR 318
+K+YQ ADWR+RPL M YAR DTH+LL IYD ++ KL K L V
Sbjct: 341 SKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNK--------LAGVLYE 392
Query: 319 SYDVCRQLYEKE--------------LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
S +V ++ +E + EN + + + + ++ +V L +WRD
Sbjct: 393 SRNVAKRRFEYSKYRPLTPSSKVYSPIEKENPWRVL--MYQYNIAPEREVLVKNLYQWRD 450
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 424
VIAR DDES +V+PN+ L + PT + L ++ + + ++IKNS++
Sbjct: 451 VIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNANVLANLIKNSLR 510
Query: 425 N 425
N
Sbjct: 511 N 511
>gi|302306959|ref|NP_983403.2| ACL001Cp [Ashbya gossypii ATCC 10895]
gi|299788769|gb|AAS51227.2| ACL001Cp [Ashbya gossypii ATCC 10895]
Length = 745
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 121/319 (37%), Positives = 176/319 (55%), Gaps = 21/319 (6%)
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRT 177
E + P E T V+ V+ L ++ +LK V E AVDLEH+ YRS+ G+ CLMQIS+R+
Sbjct: 201 ERIDPQPWEATEPIWVDNVESLSQMLDELKEVKELAVDLEHHDYRSYYGIVCLMQISSRS 260
Query: 178 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 237
+D++VDT+ LR + L +F DPT KV HGA D++WLQRD G+Y+ ++FDT ASR
Sbjct: 261 KDWLVDTIALRDDLH-VLNVIFTDPTVVKVFHGAFMDMIWLQRDLGLYVVSLFDTYHASR 319
Query: 238 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 297
L ++SL YLL F +K+YQ ADWRVRPLP + YAR DTH+LL IYD ++
Sbjct: 320 ALGFPKHSLAYLLETFAKFKTSKKYQLADWRVRPLPKPLRDYARSDTHFLLSIYDDLRNA 379
Query: 298 LSSMPKESENSDTPLTEVYKRSYDVCRQLYE-----KELLSENSYLHIYG-------LQG 345
L K L EV S +V ++ +E + N Y I +
Sbjct: 380 LVKAGK--------LAEVLNASRNVAKRRFEYTSFRPRIPDSNVYSPIESTEPWRKLMYQ 431
Query: 346 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 405
L + ++ L EWRD +AR DDES YV+PN+ L+ + P+ A + +
Sbjct: 432 YNLPPSKEPLLKKLYEWRDTVARRDDESVRYVMPNQLLVSLVSLSPSETAGVLSVSTYVT 491
Query: 406 SYIERYMGPVLSIIKNSMQ 424
Y+ + ++IK +++
Sbjct: 492 DYVRSNARTLANLIKRTLE 510
>gi|452004410|gb|EMD96866.1| hypothetical protein COCHEDRAFT_1085740 [Cochliobolus
heterostrophus C5]
Length = 792
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 179/337 (53%), Gaps = 15/337 (4%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
E T LV+ + L + ++LK+ E AVDLEH+ RS++G+ LMQISTR +D++VDT
Sbjct: 210 FESTTATLVDTPEALATMLSELKTAKEIAVDLEHHDNRSYIGMVSLMQISTRDKDWIVDT 269
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LK + L EVF DP+ KV+HGA DI+WLQRD G+Y+ +FDT A+R L
Sbjct: 270 LKPWRRKLECLNEVFADPSILKVLHGAYMDIMWLQRDLGLYIVGLFDTYHAARALGYPGA 329
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL YLL A K+YQ ADWR+RPL E+ YAR DTH+LLYIYD M+ +L
Sbjct: 330 SLAYLLERHVKFTAQKQYQLADWRIRPLSPELFEYARADTHFLLYIYDNMRNELIEKSDF 389
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKEL------LSENSYLHIYGLQGAGLNAQQLAVVAG 358
S+ + +V ++S + Q YE + L + + + +Q AV
Sbjct: 390 SDPDKNKVQDVLEKSKETSLQRYEHPIYDSETGLGSSGWYKLISRTPVQFTPEQFAVFRA 449
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK----HSYIERYMGP 414
+ WRD + R +DES +++PN + +A+ +P A L ++ S+ E +G
Sbjct: 450 VHRWRDDLGRKEDESPLFIMPNHAVFSVARAMPADKAALFNAIQHVSHIIRSHAEELVGV 509
Query: 415 VLSIIKNSMQNA---ANFEVIAQKLKEERM--EVASE 446
V+ K + + I LK ER E A+E
Sbjct: 510 VVEAKKEGLHGPELHTTLQTIEDMLKAERAGSETAAE 546
>gi|145252306|ref|XP_001397666.1| exosome component 3'-5' exonuclease [Aspergillus niger CBS 513.88]
gi|134083214|emb|CAK42852.1| unnamed protein product [Aspergillus niger]
gi|350633598|gb|EHA21963.1| hypothetical protein ASPNIDRAFT_49025 [Aspergillus niger ATCC 1015]
Length = 782
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 126/328 (38%), Positives = 178/328 (54%), Gaps = 29/328 (8%)
Query: 119 AVKPP----SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIS 174
+V PP E T V+ ++ +KE+ +LK+ E A+DLEH+ S+ GL LMQIS
Sbjct: 213 SVSPPVDYQPWESTKATFVDTLEGVKEMLEELKAAKEIAIDLEHHDVHSYQGLVSLMQIS 272
Query: 175 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
TR +D+VVDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ MFDT
Sbjct: 273 TRDKDWVVDTLKPWREELQVLNEVFTDPNILKVLHGSSMDIIWLQRDLGLYVVGMFDTYH 332
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
A+ L + SL++LL F A+K YQ ADWR+RP+P+ M YAR DTHYLL+IYD +
Sbjct: 333 AACALNYPKRSLKFLLQKFVNFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHIYDHI 392
Query: 295 KIKL--SSMPKES------ENSDTPLTEVYKRS-YDVCR-----QLYEKELLSENSYLHI 340
+ +L +S+P + E S +VY+R YD Y +LLS NS +
Sbjct: 393 RNELVENSLPDNNLIDYVLEQSKKEALQVYERPVYDAATGQGPGGWY--DLLSRNSVV-- 448
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+N +Q AV + +WRD +AR +DE V P L +A +P L R
Sbjct: 449 -------VNREQFAVFKAVHQWRDEVAREEDEGVQCVFPKHVLFRVAHTMPLDLGTLFRT 501
Query: 401 LKSKHSYIERYMGPVLSIIKNSMQNAAN 428
L ++ +L +IK + A+
Sbjct: 502 LSPVTPIVQNRAVDLLEVIKKAKDEGAD 529
>gi|374106609|gb|AEY95518.1| FACL001Cp [Ashbya gossypii FDAG1]
Length = 745
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 121/319 (37%), Positives = 176/319 (55%), Gaps = 21/319 (6%)
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRT 177
E + P E T V+ V+ L ++ +LK V E AVDLEH+ YRS+ G+ CLMQIS+R+
Sbjct: 201 ERIDPQPWEATEPIWVDNVESLSQMLDELKEVKELAVDLEHHDYRSYYGIVCLMQISSRS 260
Query: 178 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 237
+D++VDT+ LR + L +F DPT KV HGA D++WLQRD G+Y+ ++FDT ASR
Sbjct: 261 KDWLVDTIALRDDLH-VLNVIFTDPTVVKVFHGAFMDMIWLQRDLGLYVVSLFDTYHASR 319
Query: 238 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 297
L ++SL YLL F +K+YQ ADWRVRPLP + YAR DTH+LL IYD ++
Sbjct: 320 ALGFPKHSLAYLLETFAKFKTSKKYQLADWRVRPLPKPLRDYARSDTHFLLSIYDDLRNA 379
Query: 298 LSSMPKESENSDTPLTEVYKRSYDVCRQLYE-----KELLSENSYLHIYG-------LQG 345
L K L EV S +V ++ +E + N Y I +
Sbjct: 380 LVKAGK--------LAEVLNASRNVAKRRFEYTSFRPRIPDSNVYSPIESTEPWRKLMYQ 431
Query: 346 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 405
L + ++ L EWRD +AR DDES YV+PN+ L+ + P+ A + +
Sbjct: 432 YNLPPSKEPLLKKLYEWRDTVARRDDESVRYVMPNQLLVSLVSLSPSETAGVLSVSTYVT 491
Query: 406 SYIERYMGPVLSIIKNSMQ 424
Y+ + ++IK +++
Sbjct: 492 DYVRSNARTLANLIKRTLE 510
>gi|340053178|emb|CCC47466.1| putative ribosomal RNA processing protein 6 [Trypanosoma vivax
Y486]
Length = 709
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 130/370 (35%), Positives = 201/370 (54%), Gaps = 14/370 (3%)
Query: 65 ITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRF------IHPL-DNLSVLDFVDKDIGDV 117
+ +PQ + V+N++ PF ++ +++G F +HP + + ++ +
Sbjct: 141 VLRPQLTFDRPVDNSSAPFCPMY---HDENGTFHVGEPGVHPFAEQIKSAPIPEEQLLRK 197
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRT 177
L P V+ V L++L L E AVDLEH+ + S+ G TCL+QISTRT
Sbjct: 198 AETPFLPLSSCPLTFVDTVAGLEDLVKVLLIQGEIAVDLEHHDFYSYQGFTCLVQISTRT 257
Query: 178 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 237
+DF++D LKLR + L VF P KV+HGA DI WLQ+DFGIY+ N+FDT A +
Sbjct: 258 QDFIIDCLKLRASMH-LLSPVFLSPRIIKVLHGAREDIRWLQKDFGIYVVNLFDTSIALQ 316
Query: 238 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 297
L + SL + + HFC V +K+YQ ADWRVRP+P EM+ YA++DTH+LLYIYD +
Sbjct: 317 QLHMP-YSLAFAVDHFCQVKLDKKYQTADWRVRPIPIEMVSYAQQDTHFLLYIYDRLCAL 375
Query: 298 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN-SYLHIYGLQGAGLNAQQLAVV 356
L + + L V++ S + + YEK +L + +Y G GL+ QL V
Sbjct: 376 LLNCEARPSVGNL-LLHVFQESRLLSLERYEKPVLEPDVTYKVALGRSLGGLSKAQLQVA 434
Query: 357 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVL 416
+ WRD AR D+S V+ +++ IA +LP++A + R + + +L
Sbjct: 435 QEIFNWRDGAAREADDSPSAVMHLSSVLSIATRLPSSANDVLRCCSPVSVIVRTNVMKLL 494
Query: 417 SIIKNSMQNA 426
I+K+++ A
Sbjct: 495 QIVKDAVGGA 504
>gi|358394505|gb|EHK43898.1| hypothetical protein TRIATDRAFT_172602, partial [Trichoderma
atroviride IMI 206040]
Length = 816
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 201/388 (51%), Gaps = 31/388 (7%)
Query: 40 GGSAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNN---------------ANQPFQ 84
G + ++ K K K KV + KPQ +++I NN A P
Sbjct: 116 NGDSDSNSKAKQPKSTGKV-IRNANVKKPQLDFEIQPNNFFDGPWKPILTEKPHATVPLD 174
Query: 85 H--VWLQKSEDSGRFIHPLDN-LSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKE 141
V +++ + ++ HP + +S + + D+ + + P E T V+ + +
Sbjct: 175 ESLVTFVRNDGTTQYRHPYETEISSMQYPDRLFQIQDPILPQPDEATSATWVDTYEGVLA 234
Query: 142 LAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKD 201
+ +LK E AVDLEH+ +R+++GL L+QISTR +D+VVDTLK L EVF D
Sbjct: 235 MLEELKEAKEIAVDLEHHDFRTYIGLVSLLQISTREKDWVVDTLKPWRHKLQVLNEVFAD 294
Query: 202 PTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKE 261
PT KV HGA D+VWLQRD G+Y+ +FDT AS L SL +LL F +A+K
Sbjct: 295 PTIVKVFHGAYMDMVWLQRDLGLYVNGLFDTFFASDALHYSSRSLAFLLSKFVNFDADKR 354
Query: 262 YQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE-VYKRSY 320
YQ ADWR+RPL +EM+ YAR DTHYLLYIYD ++ +L +S +SD L + V +RS
Sbjct: 355 YQLADWRIRPLSEEMMFYARSDTHYLLYIYDKIRNELV----QSSDSDKHLVKRVLERSR 410
Query: 321 DVCRQLYEKELL-------SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 373
++ +E S + + G ++Q A+ L WRD+ AR +DE+
Sbjct: 411 ELSLSRHENPECNAETGEGSRGWFNFVLKNSQLGYKSEQFAIFRALWNWRDLTARKEDEN 470
Query: 374 TGYVLPNRTLIEIAKQLPTTAAKLRRLL 401
+VL N L EI + P A L LL
Sbjct: 471 PNFVLGNNNLTEIVRVNPPDAKALHSLL 498
>gi|451855365|gb|EMD68657.1| hypothetical protein COCSADRAFT_157073 [Cochliobolus sativus
ND90Pr]
Length = 791
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 124/339 (36%), Positives = 178/339 (52%), Gaps = 16/339 (4%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
E T LV+ + L + ++LK+ E AVDLEH+ RS++G+ LMQISTR +D++VDT
Sbjct: 210 FESTTATLVDTPEALATMLSELKTAKEIAVDLEHHDNRSYIGMVSLMQISTRDKDWIVDT 269
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LK + L EVF DP+ KV+HGA DI+WLQRD G+Y+ +FDT A+R L
Sbjct: 270 LKPWRRKLECLNEVFADPSILKVLHGAYMDIMWLQRDLGLYIVGLFDTYHAARALGYPGA 329
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL YLL A K+YQ ADWR+RPL E+ YAR DTH+LLYIYD M+ +L
Sbjct: 330 SLAYLLERHVKFTAQKQYQLADWRIRPLSPELFEYARADTHFLLYIYDNMRNELVEKSDF 389
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKEL------LSENSYLHIYGLQGAGLNAQQLAVVAG 358
S + +V ++S + Q YE + L + + + +Q AV
Sbjct: 390 SNPDKNKVHDVLEKSKETSLQRYEHPIYDSETGLGSSGWYKLISRTPVQFTPEQFAVFRA 449
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK----HSYIERYMGP 414
+ WRD + R +DES +++PN + +A+ +P A L ++ S+ E +G
Sbjct: 450 VHRWRDDLGRKEDESPLFIMPNHAVFSVARAMPADKAALFNAIQHVSHIIRSHAEELVGV 509
Query: 415 VLSIIKNSMQNA---ANFEVIAQKLKEERMEVASEETEV 450
V+ K + + I LK ER A ET V
Sbjct: 510 VVEAKKEGLHGPELHTTLQTIEDMLKAER---AGPETAV 545
>gi|50552133|ref|XP_503541.1| YALI0E04444p [Yarrowia lipolytica]
gi|49649410|emb|CAG79122.1| YALI0E04444p [Yarrowia lipolytica CLIB122]
Length = 738
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 174/294 (59%), Gaps = 22/294 (7%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLR-VQVGPYLRE 197
L+++ LK+ +E A+D+EH+ R++ G+TCL+Q+S+R +D+++DT+ LR +++ E
Sbjct: 230 LRDMVDHLKTQEEIAIDVEHHSMRTYYGITCLVQVSSREQDYIIDTIALRNLEI---FNE 286
Query: 198 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVN 257
V DP KV+HGA DI WLQRDFG+Y+ ++FDT A++ L L+ +SL +LL H+
Sbjct: 287 VLTDPKIVKVLHGATMDIQWLQRDFGLYIVSLFDTFHAAQALGLKGHSLAFLLQHYANFV 346
Query: 258 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYK 317
+K+YQ +DWR+RP+ E L YAR DTH+LL IYD +K L K + V +
Sbjct: 347 TSKKYQLSDWRIRPMSPEQLLYARADTHFLLNIYDQLKNALVQKDK--------IEGVLE 398
Query: 318 RSYDVCRQLYEKELLSENSYLHIYGLQGAGLN---------AQQLAVVAGLCEWRDVIAR 368
+S Q YE YL + +G G+N ++V L WRD +AR
Sbjct: 399 KSRQTASQRYEYTGYDPRYYLKSFDYEG-GINRLISQFHITGPSVSVAKALFLWRDSMAR 457
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
+DESTGYV+PN L+ +A ++P T + + KS + + + +L +IK+S
Sbjct: 458 KEDESTGYVMPNYLLVSLANRMPQTPEAVFSVSKSLPLLVRKNVEEILDVIKDS 511
>gi|357116782|ref|XP_003560156.1| PREDICTED: uncharacterized protein LOC100837522 [Brachypodium
distachyon]
Length = 909
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 130/356 (36%), Positives = 189/356 (53%), Gaps = 33/356 (9%)
Query: 67 KPQEEYK-IVVNNANQPFQHVWLQKSE---------------DSGRFIHPLDNLSVLDFV 110
KPQ +K + +N+ PF+H+ Q ++ +S + +HP + +
Sbjct: 61 KPQARFKRVFADNSYSPFKHLRRQGADPVADGQRGDAQPQPLESSQKMHPFGE-EITSLL 119
Query: 111 DKDIGDVEAVKPPSLEQTP-----FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFL 165
D G Q P + V V L+ LA L + FAVD E + RSFL
Sbjct: 120 DNPTGFSTFCNFTLSSQCPEMSTSYNWVNTVAQLEHLAKLLSDEEVFAVDTEQHSLRSFL 179
Query: 166 GLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIY 225
G T L+QIST+ ED+++DT+ L +G LR VF P+ K+ HGAD D++WLQRDF IY
Sbjct: 180 GYTALVQISTQKEDYLIDTIALHDAMG-ILRPVFSSPSICKIFHGADNDVLWLQRDFHIY 238
Query: 226 LCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTH 285
+ N+FDT +A VL + SL YLL +CGV +K Q DWRVRPL EM+ YAR D H
Sbjct: 239 VVNIFDTAKACEVLSKPQKSLAYLLEIYCGVTTDKTMQREDWRVRPLTPEMVEYARSDAH 298
Query: 286 YLLYIYDIMKIKLSSMPKESENSDTP-LTEVYKRSYDVCRQLYEKEL-----LSENSYLH 339
YLL I + + +L + +S + T E +RS VC QLY KE+ S + +
Sbjct: 299 YLLKIANCLASELHAKACDSPDGKTNFFLEASRRSNMVCMQLYAKEIECPPGASSAASIL 358
Query: 340 IYGLQGAGLNAQQLA----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
LQ GL++++ + +V C WRD++AR DES Y+L ++ + +A +P
Sbjct: 359 SRNLQTHGLDSKKSSEVKDLVRKFCAWRDLMARMHDESLRYILSDQAIASLAVSVP 414
>gi|295659299|ref|XP_002790208.1| exosome component 3'-5' exonuclease [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226281913|gb|EEH37479.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 827
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 175/319 (54%), Gaps = 23/319 (7%)
Query: 117 VEAVKPP----SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQ 172
+ ++ PP S + T V+ ++ + + A+LK E A+DLEH+ S+ GL CLMQ
Sbjct: 211 IYSISPPVEYKSFDATTATFVDTLEGVHSMLAELKEATEIAIDLEHHDVHSYHGLVCLMQ 270
Query: 173 ISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 232
ISTR +D++VDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ +FDT
Sbjct: 271 ISTREQDWIVDTLKPWREELQVLNEVFTDPKILKVLHGSTMDIIWLQRDLGLYIVGLFDT 330
Query: 233 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 292
S L + SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYIYD
Sbjct: 331 YHGSVALNYPKRSLKFLLEKFVNFKAEKKYQMADWRLRPLLPGMFDYARSDTHYLLYIYD 390
Query: 293 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG----- 347
++ +S+ + S + + V ++S Q YE+ + + + G G G
Sbjct: 391 HIR---NSLVENSTPAHNLVDYVLEKSRQEALQRYERPVYNAET-----GEGGGGWHDML 442
Query: 348 ------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 401
+ +Q AV + +WRD +AR++DE Y+L ++L +IA +P A L R +
Sbjct: 443 IRNSTLFSREQFAVFKAVHQWRDKLARSEDEGVQYILSKQSLFKIAHAMPLDPASLLRTI 502
Query: 402 KSKHSYIERYMGPVLSIIK 420
+ M ++ +IK
Sbjct: 503 SPVSPPVRARMSELVQVIK 521
>gi|330926290|ref|XP_003301407.1| hypothetical protein PTT_12892 [Pyrenophora teres f. teres 0-1]
gi|311323973|gb|EFQ90519.1| hypothetical protein PTT_12892 [Pyrenophora teres f. teres 0-1]
Length = 796
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 182/336 (54%), Gaps = 15/336 (4%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
LV+ + L + A+LK+ E A+DLEH+ R+++G+ CLMQISTR +D++VDTLK +
Sbjct: 217 LVDTPEALAAMLAELKTAKEIAIDLEHHDNRTYIGMVCLMQISTRDKDWIVDTLKPWRRK 276
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLH 251
L EVF DP+ KV+HGA DI+WLQRD G+Y+ +FDT A+R L + SL YLL
Sbjct: 277 LECLNEVFADPSILKVLHGAFMDIIWLQRDLGLYIVGLFDTFHAARALGYQAASLAYLLE 336
Query: 252 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP 311
A K+YQ ADWR RPL E+ YAR DTH+LLYI+D M+ +L + S
Sbjct: 337 LHVNFKAQKQYQLADWRQRPLSKELFEYARADTHFLLYIFDNMRNELVNKSDFSNPEKNK 396
Query: 312 LTEVYKRSYDVCRQLYEKEL------LSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
+ +V + S + + YE + L + + A +Q +V + EWRD
Sbjct: 397 VQDVLQNSKETSLKRYEHPIYDSETGLGTAGWYKLISRTPAQFTREQFSVFRAVHEWRDT 456
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQN 425
+ R +DES +++PN + +A+ +P+ L ++ + ++ ++ + +
Sbjct: 457 LGRKEDESPLFIMPNHAVFSVARDMPSNKVGLFNAIQHVGHITRAHADELVGVVVEAKER 516
Query: 426 AAN-------FEVIAQKLKEERM--EVASEETEVLV 452
A+ + IA + ER+ E A + EV+V
Sbjct: 517 GASGPELHEVLQAIADMQRAERVESETAPKTAEVVV 552
>gi|367005124|ref|XP_003687294.1| hypothetical protein TPHA_0J00370 [Tetrapisispora phaffii CBS 4417]
gi|357525598|emb|CCE64860.1| hypothetical protein TPHA_0J00370 [Tetrapisispora phaffii CBS 4417]
Length = 743
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/321 (38%), Positives = 182/321 (56%), Gaps = 33/321 (10%)
Query: 126 EQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTL 185
E+T V+ + L + +LK+ E AVDLEH+ +RS+ G+TCLMQISTR D++VDT+
Sbjct: 206 EETEAIWVDNEESLAAMLNELKTATELAVDLEHHDFRSYYGITCLMQISTRNTDYLVDTI 265
Query: 186 KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS 245
LR ++ L VF DP K++HGA DI+WLQRD G+Y+ ++FDT ASR L R+S
Sbjct: 266 ALRDKLQ-VLNVVFTDPKITKILHGAFMDIIWLQRDLGLYIVSLFDTYHASRALGFPRHS 324
Query: 246 LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD------IMKIKLS 299
L YLL F +K+YQ ADWR RPL M YAR DTH+LL I+D I + KL+
Sbjct: 325 LAYLLERFAHFKTSKQYQLADWRTRPLSKAMNAYARADTHFLLNIFDQLRNMLIQEDKLA 384
Query: 300 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------------NSYLHIYGLQGAG 347
SM ES +V KR ++ + Y+ L S S ++ Y +
Sbjct: 385 SMLHESR-------KVAKRRFEYSK--YKPTLPSSAVFSPTESDMPWRSMIYQYNIP--- 432
Query: 348 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 407
+Q++ +V L EWRD IAR DDES Y++PN+ + + + +PT A + + +
Sbjct: 433 --SQKVELVKRLWEWRDTIARRDDESPRYIMPNQLIASLVEYVPTNPAGVISVNRMMTDP 490
Query: 408 IERYMGPVLSIIKNSMQNAAN 428
+ + ++IK+++++ N
Sbjct: 491 VRSNAKAIANLIKSTLEDMKN 511
>gi|189194651|ref|XP_001933664.1| exosome complex exonuclease Rrp [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979228|gb|EDU45854.1| exosome complex exonuclease Rrp [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 786
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 164/294 (55%), Gaps = 18/294 (6%)
Query: 122 PPSLEQT-------PF-----KLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTC 169
PP+L +T PF LV+ + L + A+LK+ E A+DLEH+ R+++G+ C
Sbjct: 185 PPTLYETAEPQQYAPFDSTTATLVDTPEALAAMLAELKTAKEIAIDLEHHDNRTYIGMVC 244
Query: 170 LMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 229
LMQISTR +D++VDTLK + L EVF DP+ KV+HGA DIVWLQRD G+Y+ +
Sbjct: 245 LMQISTRDKDWIVDTLKPWRRKLECLNEVFADPSILKVLHGAFMDIVWLQRDLGLYIVGL 304
Query: 230 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 289
FDT A+R L + SL YLL A K+YQ ADWR RPL E+ YAR DTH+LLY
Sbjct: 305 FDTFHAARALGYQAASLAYLLELHVNFKAQKQYQLADWRQRPLSKELFEYARADTHFLLY 364
Query: 290 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL------LSENSYLHIYGL 343
I+D M+ +L + S + +V + S + + YE + L + +
Sbjct: 365 IFDNMRNELVNKSDFSNPEKNKVQDVLQNSKETSLKRYEHPIYDSETGLGTAGWYKLISR 424
Query: 344 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
QQ +V + EWRD + R +DES +++PN + +A+ +P+ L
Sbjct: 425 TPVQFTRQQFSVFRAVHEWRDTLGRKEDESPLFIMPNHAVFSVARDMPSNKVGL 478
>gi|358368335|dbj|GAA84952.1| exosome complex exonuclease Rrp6 [Aspergillus kawachii IFO 4308]
Length = 784
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 176/327 (53%), Gaps = 29/327 (8%)
Query: 119 AVKPP----SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIS 174
+V PP E T V+ + +KE+ +LK+ E A+DLEH+ S+ GL LMQIS
Sbjct: 213 SVSPPVDYQPWESTKATFVDTQEGVKEMLEELKAAKEIAIDLEHHDVHSYQGLVSLMQIS 272
Query: 175 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
TR +D+VVDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ MFDT
Sbjct: 273 TRDKDWVVDTLKPWREELQVLNEVFTDPNILKVLHGSSMDIIWLQRDLGLYVVGMFDTYH 332
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
A+ L + SL++LL F A+K YQ ADWR+RP+P+ M YAR DTHYLL+IYD +
Sbjct: 333 AACALNYPKRSLKFLLQKFVNFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHIYDHI 392
Query: 295 KIKL--SSMPKES------ENSDTPLTEVYKRS-YDVCR-----QLYEKELLSENSYLHI 340
+ +L +S+P + E S +VY+R YD Y +LLS NS +
Sbjct: 393 RNELVENSLPDNNLVDYVLEQSKKEALQVYERPVYDAATGQGPGGWY--DLLSRNSVV-- 448
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+N +Q AV + +WRD +AR +DE V P L +A +P L R
Sbjct: 449 -------VNREQFAVFKAVHQWRDEVAREEDEGVQCVFPKHVLFRVAHTMPLDLGTLFRT 501
Query: 401 LKSKHSYIERYMGPVLSIIKNSMQNAA 427
L ++ +L +IK + A
Sbjct: 502 LSPVTPIVQNRAVDLLEVIKKAKDEGA 528
>gi|365985620|ref|XP_003669642.1| hypothetical protein NDAI_0D00850 [Naumovozyma dairenensis CBS 421]
gi|343768411|emb|CCD24399.1| hypothetical protein NDAI_0D00850 [Naumovozyma dairenensis CBS 421]
Length = 790
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 174/314 (55%), Gaps = 24/314 (7%)
Query: 123 PSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVV 182
P +E T V+ + L+ + L + EFAVDLEH+ YR++ G+ CLMQISTRT+D++V
Sbjct: 228 PWMETTAI-WVDTPESLQSMIKDLNNCTEFAVDLEHHDYRTYYGIVCLMQISTRTQDYIV 286
Query: 183 DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE 242
DTLKLR + P L E F +P KV+HGA DI+WLQRD G+Y+ ++FDT ASR L
Sbjct: 287 DTLKLRSHLQP-LNEPFTNPQITKVLHGAFMDIIWLQRDLGLYIVSLFDTFHASRALGFP 345
Query: 243 RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL---- 298
+NSL YLL F +K+YQ ADWR+RPL M YAR DTH+LL I+D M+ KL
Sbjct: 346 KNSLAYLLEKFSNFKTSKKYQMADWRIRPLSKAMNSYARSDTHFLLNIFDQMRNKLVQDG 405
Query: 299 --SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV- 355
+ + KES N V KR ++ + Y + S Y I + Q +
Sbjct: 406 KLAGVLKESRN-------VAKRRFEYVK--YRPLITSSAVYSPIEKIDPWKTLMYQYNIP 456
Query: 356 ------VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 409
+ L +WRD IAR DDES Y++PN+ L+ + P A + + ++
Sbjct: 457 LAKELLLKELYQWRDKIARRDDESPRYIMPNQLLVSLVAYAPVEPAGVVSVSNMVTDHVR 516
Query: 410 RYMGPVLSIIKNSM 423
+ ++IKN +
Sbjct: 517 SNSKILANLIKNCL 530
>gi|378728924|gb|EHY55383.1| exosome complex exonuclease Rrp6 [Exophiala dermatitidis
NIH/UT8656]
Length = 820
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 132/356 (37%), Positives = 192/356 (53%), Gaps = 42/356 (11%)
Query: 67 KPQEEYKIVVNNA-NQPFQHVWLQK------------SEDSGRFIHPLDNLSVLDFVDKD 113
KPQ+ ++ V+NA +P++ + QK ED+G + HP
Sbjct: 143 KPQQFFERQVDNAETKPWKPLLKQKPHATVPLEESIGDEDTG-YKHPY------------ 189
Query: 114 IGDVEAVK-PPSLEQT----PFK--------LVEEVKDLKELAAKLKSVDEFAVDLEHNQ 160
+ ++E PPS+ QT PF ++ + ++++ +LK E A+DLEHN
Sbjct: 190 LHEIEQYAYPPSVYQTSPPIPFAPPEQSEPIFIDTEEGVRDMLEELKGASEIAIDLEHND 249
Query: 161 YRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQR 220
RS++G+ CLMQISTR +D+++DTLK + L EVF D KV HG++ DI+WLQR
Sbjct: 250 QRSYVGMVCLMQISTRDKDWIIDTLKPWRENLQILNEVFADTKILKVFHGSNMDIIWLQR 309
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
D G+Y+ +FDT A L+ L++LLH F A K+YQ ADWRVRPLP E++ YA
Sbjct: 310 DLGLYVVGLFDTYHACCALQFPGKGLKHLLHQFANFEAQKQYQTADWRVRPLPRELIDYA 369
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESEN-SDTPLTEVYKRSYDVC-RQLYEKELLSENSYL 338
R DTH+LL IYD ++ L ++N +D LT+ K + R +Y+ E
Sbjct: 370 RSDTHFLLNIYDNLRNMLIERSTPNDNLTDFVLTQSKKEALQTYERSVYDMESGRGPLGW 429
Query: 339 HIYGLQ-GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 393
LQ + +Q V + EWRD AR DE YVLPNR L +IA+ +PT+
Sbjct: 430 LGLLLQRTVRFDNEQFGVFRAVHEWRDRKARELDEGLQYVLPNRVLWQIAETMPTS 485
>gi|343427876|emb|CBQ71402.1| related to RRP6-Exonuclease component of the nuclear exosome
[Sporisorium reilianum SRZ2]
Length = 921
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 156/485 (32%), Positives = 233/485 (48%), Gaps = 57/485 (11%)
Query: 121 KPPSL--EQTPFKLVEEVKDLKELAAKLKS--VDEFAVDLEHNQYRSFLGLTCLMQISTR 176
K PSL + PF+ + L++L L V E A+DLEH+ YR++ G+ CLMQ+STR
Sbjct: 312 KDPSLSTDACPFQWISTKAQLEQLRDHLDEPRVTEIAIDLEHHSYRTYQGIVCLMQLSTR 371
Query: 177 TEDFVVDTLKLRV-QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQA 235
D++VDTL V + L F P K KV+HGA+ D++WLQRD G+YL N+FDT A
Sbjct: 372 WGDWIVDTLADEVREHAALLNTSFTHPEKVKVLHGANHDVLWLQRDLGLYLVNLFDTYHA 431
Query: 236 SRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
+ VL + L YL+ +C +A+K YQ ADWR+RPLP EML YAR DTH LLYIYD ++
Sbjct: 432 TNVLLFPSHGLNYLMARYCRFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLYIYDNLR 491
Query: 296 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL-----SENSYLHIYGLQG--AGL 348
+L + +V++RS DV Y KE S + ++ G A L
Sbjct: 492 WELMEA-----GGVAAIRDVFERSKDVAMATYAKEEWDSDGESREGWRSVWRKWGGEAAL 546
Query: 349 NAQQLA----------VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 398
++ +V L WRD +AR +DES YVL L+ +A + PT +
Sbjct: 547 GTEERKDVRDMKREERLVRVLHRWRDGVAREEDESPRYVLGASHLMMLATRAPTGREGVL 606
Query: 399 RLLKSKHSYIERYMGPVLSIIKNSM------QNAANFEVIAQKLKEERMEVASEETEVLV 452
+ + +++ + + ++I + Q A + A LK + + + +
Sbjct: 607 ACIPPNATGLKKRVDEIGALIAAEVQAWEQDQAAKKHTLSAALLKHSNDDDEDDVGQAIT 666
Query: 453 LDTSSNLKIPNVGRESVDGVDALVGTTMPHPPA--YTQLKQEPPKVGSSVAELDRNGLGS 510
DT P+ ++ V A PH A ++ P V +V L + G
Sbjct: 667 RDTPQPTHTPSPAISAISTVAA------PHVDASIWSTTTDTRPSVRGAVRSLASSLFGR 720
Query: 511 FAHPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGF----G 566
+ P A ++ + +T S L A PS R + A + A+K GF G
Sbjct: 721 ASTPTSAAVAKPQLSTTTSKL--------FGALSGPSTRAS-AQIDAVKA---GFVDAVG 768
Query: 567 ALLGN 571
AL+GN
Sbjct: 769 ALVGN 773
>gi|212528170|ref|XP_002144242.1| exosome component 3'-5' exonuclease [Talaromyces marneffei ATCC
18224]
gi|210073640|gb|EEA27727.1| exosome complex exonuclease Rrp6, putative [Talaromyces marneffei
ATCC 18224]
Length = 795
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 175/312 (56%), Gaps = 25/312 (8%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E T V+ + + E+ +LK +E AVDLEH+ ++ GL LMQISTR +D+VVDT
Sbjct: 223 VESTEAVWVDTPEGVAEMVKELKKANEIAVDLEHHDMHTYYGLVSLMQISTRDKDWVVDT 282
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+ + L EVF DP KV HG+ DIVWLQRD G+Y+ +FDT A+ L +
Sbjct: 283 LQPWREDLQQLNEVFADPNILKVFHGSTMDIVWLQRDLGLYVVGLFDTYHAAVALGFPKR 342
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL--SSMP 302
SL++LL + A+K+YQ ADWR+RPL +EMLRYAR DTHYLLYIYD ++ +L S P
Sbjct: 343 SLKFLLEKYARYEADKKYQMADWRLRPLTEEMLRYARADTHYLLYIYDCLRNELLEKSTP 402
Query: 303 KESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG------------LNA 350
K ++ + V +RS Q YE+ + + G QGAG L+
Sbjct: 403 KRNQ-----IDYVLERSKTEALQRYERPVYD------MAGGQGAGGWHDLLSRNPALLSK 451
Query: 351 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 410
+Q AV + EWRD +AR +DE V P L ++A +P L + L ++
Sbjct: 452 EQFAVFRAVHEWRDRVAREEDEGLQCVFPRHMLFKVAIAMPVDKHTLFKTLSPVTLIVKY 511
Query: 411 YMGPVLSIIKNS 422
+ +L++IK +
Sbjct: 512 RINELLALIKKA 523
>gi|156844457|ref|XP_001645291.1| hypothetical protein Kpol_1037p29 [Vanderwaltozyma polyspora DSM
70294]
gi|156115951|gb|EDO17433.1| hypothetical protein Kpol_1037p29 [Vanderwaltozyma polyspora DSM
70294]
Length = 746
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 173/300 (57%), Gaps = 23/300 (7%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L+ + KLK E AVDLEH+ YRS+ G+ CLMQISTR EDF+VDTL LR ++ L EV
Sbjct: 221 LQSMLDKLKECTEIAVDLEHHDYRSYYGIVCLMQISTRKEDFLVDTLALRDELH-ILNEV 279
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNA 258
F DP KV+HGA DI+WLQRD G+Y+ ++FDT ASR L R+SL YLL +
Sbjct: 280 FADPNILKVLHGAFMDIIWLQRDLGLYVVSLFDTYHASRALGFPRHSLAYLLEKYANFKT 339
Query: 259 NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD------IMKIKLSSMPKESENSDTPL 312
+K+YQ ADWRVRPL M YAR DTH+LL IYD I + KL+ + ES N
Sbjct: 340 SKKYQLADWRVRPLSKPMHAYARADTHFLLNIYDQIRNQLIRENKLAEVLFESRN----- 394
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYG-------LQGAGLNAQQLAVVAGLCEWRDV 365
V KR ++ R + ++ S + I + + + ++ ++ + EWRD+
Sbjct: 395 --VAKRRFEYSR--FRPKVPSPAVFTPIEKEEPWRTLVYQYNVPSTKIELLKRIWEWRDM 450
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQN 425
IAR DDES Y++PN+ +I + + P A + + ++ + ++IK S+++
Sbjct: 451 IARRDDESPRYIMPNQLMISLVEYTPIDPAGVISVSNVMTDHVRSNSKVIANLIKKSLED 510
>gi|225560671|gb|EEH08952.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus G186AR]
Length = 807
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 169/304 (55%), Gaps = 9/304 (2%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
E T V+ ++ + + A+LK V E A+DLEH+ S+ GL CLMQISTR +D++VDT
Sbjct: 224 FETTTATFVDTLEGIHSMLAELKEVTEIAIDLEHHDAHSYHGLVCLMQISTRDKDWIVDT 283
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LK + L EVF DP KV+HG+ D++WLQRD G+Y+ +FDT A+ L +
Sbjct: 284 LKPWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIVGLFDTYHAAVALNYPKK 343
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYIYD ++ + + +
Sbjct: 344 SLKFLLEKFANFQAEKKYQIADWRLRPLLPGMFDYARSDTHYLLYIYDQIR---NDLIEH 400
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQGAGLNAQQLAVVAG 358
S S+ + V +RS Q YE+ + + + + + + +Q AV
Sbjct: 401 STPSNNLIDYVLERSKQEALQRYERPVYNAETGEGRIGWRDMLIRNSTLFSREQFAVFRA 460
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 418
+ +WRD IAR++DE YVL ++L +IA +P L R + + ++ +
Sbjct: 461 VHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPVSPLVRARASELVQV 520
Query: 419 IKNS 422
IK +
Sbjct: 521 IKQA 524
>gi|325088958|gb|EGC42268.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus H88]
Length = 807
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 169/304 (55%), Gaps = 9/304 (2%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
E T V+ ++ + + A+LK V E A+DLEH+ S+ GL CLMQISTR +D++VDT
Sbjct: 224 FETTTATFVDTLEGIHSMLAELKEVTEIAIDLEHHDAHSYHGLVCLMQISTRDKDWIVDT 283
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LK + L EVF DP KV+HG+ D++WLQRD G+Y+ +FDT A+ L +
Sbjct: 284 LKPWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIVGLFDTYHAAVALNYPKK 343
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYIYD ++ + + +
Sbjct: 344 SLKFLLEKFANFQAEKKYQIADWRLRPLLPGMFDYARSDTHYLLYIYDQIR---NDLIEH 400
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQGAGLNAQQLAVVAG 358
S S+ + V +RS Q YE+ + + + + + + +Q AV
Sbjct: 401 STPSNNLIDYVLERSKQEALQRYERPVYNAETGEGRIGWRDMLIRNSTLFSREQFAVFRA 460
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 418
+ +WRD IAR++DE YVL ++L +IA +P L R + + ++ +
Sbjct: 461 VHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPVSPLVRARASELVQV 520
Query: 419 IKNS 422
IK +
Sbjct: 521 IKQA 524
>gi|169617554|ref|XP_001802191.1| hypothetical protein SNOG_11959 [Phaeosphaeria nodorum SN15]
gi|111059251|gb|EAT80371.1| hypothetical protein SNOG_11959 [Phaeosphaeria nodorum SN15]
Length = 805
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 175/321 (54%), Gaps = 28/321 (8%)
Query: 122 PPSL----EQTPFK--------LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTC 169
PPS+ E TP++ V+ + + E+ A+LK+ E AVDLEH+ RS++G+
Sbjct: 212 PPSVYEISEPTPYQPFDSTTATYVDTPEAVAEMLAELKTAKEIAVDLEHHDNRSYIGMVS 271
Query: 170 LMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 229
LMQISTR +D++VDTLK + L EVF DP KV+HGA DI+WLQRD G+Y+ +
Sbjct: 272 LMQISTRDKDWIVDTLKPWRRKLECLNEVFADPNILKVLHGAYMDIMWLQRDLGLYIVGL 331
Query: 230 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 289
FDT A+R L SL YLL A K+YQ ADWR+RPL E+ YAR DTH+LLY
Sbjct: 332 FDTHHAARSLGYPGGSLAYLLERHVQFKAQKQYQLADWRIRPLGKELFEYARADTHFLLY 391
Query: 290 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-- 347
I+D M+ +L S+ + +V +S +V Q YE + Y GL AG
Sbjct: 392 IFDNMRNELVERSDFSDPEKNKVQDVLIKSKEVALQRYEHPV-----YDAKLGLGSAGWH 446
Query: 348 ---------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 398
QQ +V + +WRD ++R +DES +++PN + +A+ +P A L
Sbjct: 447 KLIMRTPVQFTPQQFSVFRAVHQWRDSLSRKEDESPLFIMPNHAVFSVARAMPVDKAALF 506
Query: 399 RLLKSKHSYIERYMGPVLSII 419
++ I ++S+I
Sbjct: 507 NAIQHVSHIIRGKADELVSVI 527
>gi|226288046|gb|EEH43559.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 826
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 117/317 (36%), Positives = 173/317 (54%), Gaps = 23/317 (7%)
Query: 119 AVKPP----SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIS 174
++ PP S + T V+ ++ + + A+LK E A+DLEH+ S+ GL CLMQIS
Sbjct: 213 SISPPVEYKSFDATTATFVDTLEGVHSMLAELKEATEIAIDLEHHDVHSYHGLVCLMQIS 272
Query: 175 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
TR +D++VDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ +FDT
Sbjct: 273 TRDQDWIVDTLKPWREELQVLNEVFTDPKILKVLHGSTMDIIWLQRDLGLYIVGLFDTYH 332
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
S L + SL++LL F A K YQ ADWR+RPL M YAR DTHYLLYIYD +
Sbjct: 333 GSVALNYPKRSLKFLLEKFVNFKAEKIYQMADWRLRPLLPGMFDYARSDTHYLLYIYDHI 392
Query: 295 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG------- 347
+ +S+ + S + + V ++S Q YE+ + + + G G G
Sbjct: 393 R---NSLVENSTPAHKLVDYVLEKSRQEALQRYERPVYNAET-----GEGGGGWHDVLIR 444
Query: 348 ----LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 403
+ +Q AV + +WRD +AR++DE Y+L ++L +IA +P A L R +
Sbjct: 445 NSTLFSREQFAVFRAVHQWRDKLARSEDEGVQYILSKQSLFKIAHAMPLDPASLFRTISP 504
Query: 404 KHSYIERYMGPVLSIIK 420
+ M ++ +IK
Sbjct: 505 VSPPVRARMSELVQVIK 521
>gi|255934162|ref|XP_002558362.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582981|emb|CAP81189.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 756
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 168/317 (52%), Gaps = 15/317 (4%)
Query: 117 VEAVKPPSLEQTPFK-----LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLM 171
V V PP +E PF+ V+ + ++++ +LK E A+DLEH+ S+ GL LM
Sbjct: 205 VYQVSPP-VEYLPFESTTATFVDTLDGVRQMLKELKQAKEIAIDLEHHDVHSYHGLVSLM 263
Query: 172 QISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 231
QISTR +D+VVDTL+ + L EVF DP KV+HG+ DI+WLQRD G+Y+ MFD
Sbjct: 264 QISTRDKDWVVDTLQPWREDLQMLNEVFADPKILKVLHGSTMDIIWLQRDLGLYVVGMFD 323
Query: 232 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 291
T A+ L + SL++LL F A+K YQ ADWR RPLP M YAR DTHYLLYIY
Sbjct: 324 TFHAASALGFPKRSLKFLLSKFVNFEADKRYQTADWRARPLPPAMFDYARSDTHYLLYIY 383
Query: 292 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------NSYLHIYGLQG 345
D ++ L E + + V +RS Q YE+ + + +
Sbjct: 384 DRLRNDLIDNSTEDASH---IDYVNERSKHEALQRYERPVYDAVNGYGPGGWYDLLWRHS 440
Query: 346 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 405
A L+ +Q AV + +WRD +ARA+DE V P L ++A +P L R L
Sbjct: 441 ANLSKEQFAVFKAVHQWRDEVARAEDEGWQCVFPKHMLFKLATVMPLDMGSLFRTLSPMT 500
Query: 406 SYIERYMGPVLSIIKNS 422
+ +L +IK +
Sbjct: 501 PITKERSHDLLEVIKKA 517
>gi|357471299|ref|XP_003605934.1| Exosome complex exonuclease RRP6 [Medicago truncatula]
gi|355506989|gb|AES88131.1| Exosome complex exonuclease RRP6 [Medicago truncatula]
Length = 974
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 140/390 (35%), Positives = 206/390 (52%), Gaps = 60/390 (15%)
Query: 67 KPQEEYK-IVVNNANQPFQHVWLQKSEDSG---------RF-IH------PLDNLSVLDF 109
KPQ +K ++ +N+ PF+H+ S+++G RF IH P L+ D
Sbjct: 49 KPQSAFKRVLADNSYAPFKHLSFNASKNNGNTFFFLLSHRFSIHQRCATNPAHILNCEDQ 108
Query: 110 VDKDI---GDVEAVKP-------------PSLEQTPFKL--------VEEVKDLKELAAK 145
+ + G+ ++ P P +E KL V+ LK+L
Sbjct: 109 AESSVFCTGNGSSLHPFQAEITALLQNHQPEIELGAEKLEMNDSYVWVDTEMQLKKLVNV 168
Query: 146 LKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKK 205
L F VD E + RSFLG T L+QIST+ ED+++DT+ L + LR VF DP+
Sbjct: 169 LSKEKFFGVDTEQHSLRSFLGFTGLVQISTQQEDYLIDTIALHDSM-EILRPVFADPSIC 227
Query: 206 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ-- 263
KV HGAD D++WLQRDF IY+ N+FDT +A VL + SL YLL +CGVN NK Q
Sbjct: 228 KVFHGADNDVLWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYCGVNTNKLLQVW 287
Query: 264 ---NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP---LTEVYK 317
DWR RPL EM+ YAR D HYLLYI + + +L + E+ SD + E +
Sbjct: 288 PNYREDWRQRPLSAEMVHYARTDAHYLLYIANCLIDELKQLDNENSCSDDKFHFVLEASR 347
Query: 318 RSYDVCRQLYEKELLS---ENSYLHIYGLQGAGLNA-------QQLAVVAGLCEWRDVIA 367
RS +C QL+ KE+ + E++ L +Y + + Q L++V LC WRD++A
Sbjct: 348 RSNMICLQLFTKEIEASPGESAALSLYSRHQSNRASPSISNETQFLSIVRQLCTWRDLMA 407
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
R DES YVL ++ ++ +A +LP + +++
Sbjct: 408 RIHDESLKYVLSDQAIVALASRLPASNSEI 437
>gi|225679037|gb|EEH17321.1| exosome component 10 [Paracoccidioides brasiliensis Pb03]
Length = 827
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 174/319 (54%), Gaps = 23/319 (7%)
Query: 119 AVKPP----SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIS 174
++ PP S + T V+ ++ + + A+LK E A+DLEH+ S+ GL CLMQIS
Sbjct: 213 SISPPVEYKSFDATTATFVDTLEGVHSMLAELKEATEIAIDLEHHDVHSYHGLVCLMQIS 272
Query: 175 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
TR +D++VDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ +FDT
Sbjct: 273 TRDQDWIVDTLKPWREELQVLNEVFTDPKILKVLHGSTMDIIWLQRDLGLYIVGLFDTYH 332
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
S L + SL++LL F A K YQ ADWR+RPL M YAR DTHYLLYIYD +
Sbjct: 333 GSVALNYPKRSLKFLLEKFVNFKAEKIYQMADWRLRPLLPGMFDYARSDTHYLLYIYDHI 392
Query: 295 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG------- 347
+ +S+ + S + + V ++S Q YE+ + + + G G G
Sbjct: 393 R---NSLVENSTPAHKLVDYVLEKSRQEALQRYERPVYNAET-----GEGGGGWHDVLIR 444
Query: 348 ----LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 403
+ +Q AV + +WRD +AR++DE Y+L ++L +IA +P A L R +
Sbjct: 445 NSTLFSREQFAVFRAVHQWRDKLARSEDEGVQYILSKQSLFKIAHAMPLDPASLFRTISP 504
Query: 404 KHSYIERYMGPVLSIIKNS 422
+ M ++ +IK +
Sbjct: 505 VSPPVRARMSELVQVIKEA 523
>gi|71024099|ref|XP_762279.1| hypothetical protein UM06132.1 [Ustilago maydis 521]
gi|46101781|gb|EAK87014.1| hypothetical protein UM06132.1 [Ustilago maydis 521]
Length = 1027
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 184/336 (54%), Gaps = 28/336 (8%)
Query: 124 SLEQTPFKLVEEVKDLKELAAKLKS--VDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV 181
S + PF+ V + +++L L V+E A+DLEH+ YR++ G+ CLMQ+STR D++
Sbjct: 333 STDACPFQWVSTKQQIEQLRDHLDEPRVNEIAIDLEHHSYRTYQGIVCLMQLSTRWGDWI 392
Query: 182 VDTLKLRV-QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 240
+DTL V Q L F +P K KV+HGA+ D++WLQRD G+YL N+FDT A+ VL
Sbjct: 393 IDTLSDDVRQHAELLNSSFTNPDKVKVLHGANHDVLWLQRDLGLYLVNLFDTYHATNVLM 452
Query: 241 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300
+ L YL+ +C +A+K YQ ADWR+RPLP EML YAR DTH LL+IYD ++ +L
Sbjct: 453 FPSHGLNYLMARYCNFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLFIYDNLRHEL-- 510
Query: 301 MPKESENSDTPLTEVYKRSYDVCRQLYEKELL-----SENSYLHIYGLQG--AGLNAQQL 353
E+ D + +V+ RS V Y KE + + ++ G A L +
Sbjct: 511 --MEAGGIDA-IRQVFIRSKQVATATYAKEQWDTDGETREGWRTVWRKWGGEAALGTEHR 567
Query: 354 A----------VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 403
+V L WRD +AR +DES Y+L L+ +A + PTT + +
Sbjct: 568 KEVSQMKKEERLVRALHRWRDTVAREEDESPRYILGANNLMMLAARAPTTKQGVLACIPP 627
Query: 404 KHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEE 439
+ +++ + + S+I M A+++ Q ++E
Sbjct: 628 NATGLKKRIDELASLI---MAEVADWQKDQQARRDE 660
>gi|240280781|gb|EER44285.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus H143]
Length = 671
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 169/304 (55%), Gaps = 9/304 (2%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
E T V+ ++ + + A+LK V E A+DLEH+ S+ GL CLMQISTR +D++VDT
Sbjct: 224 FETTTATFVDTLEGIHSMLAELKEVTEIAIDLEHHDAHSYHGLVCLMQISTRDKDWIVDT 283
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LK + L EVF DP KV+HG+ D++WLQRD G+Y+ +FDT A+ L +
Sbjct: 284 LKPWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIVGLFDTYHAAVALNYPKK 343
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYIYD ++ + + +
Sbjct: 344 SLKFLLEKFANFQAEKKYQIADWRLRPLLPGMFDYARSDTHYLLYIYDQIR---NDLIEH 400
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQGAGLNAQQLAVVAG 358
S S+ + V +RS Q YE+ + + + + + + +Q AV
Sbjct: 401 STPSNNLIDYVLERSKQEALQRYERPVYNAETGEGRIGWRDMLIRNSTLFSREQFAVFRA 460
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 418
+ +WRD IAR++DE YVL ++L +IA +P L R + + ++ +
Sbjct: 461 VHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPVSPLVRARASELVQV 520
Query: 419 IKNS 422
IK +
Sbjct: 521 IKQA 524
>gi|402080291|gb|EJT75436.1| exosome complex exonuclease Rrp [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 834
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 178/316 (56%), Gaps = 6/316 (1%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
V+ + + E+ LK E AVDLEH+ +R++ GL LMQ+STR +D+VVDTLK +
Sbjct: 235 VDTYEGVLEMLEDLKRATEIAVDLEHHDFRTYSGLLSLMQVSTRDKDWVVDTLKPWRRRL 294
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L +VF DP KV HGA DI+WLQRD G+Y+ +FDT A+ L SL YLL
Sbjct: 295 EVLNQVFADPKILKVFHGAFMDIIWLQRDLGLYVVGLFDTFHAAEALLYPSKSLAYLLKK 354
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPL 312
F A+K +Q ADWR+RPL EML YAR DTHYLLY+YD+M+ +L + + +
Sbjct: 355 FADFEADKRFQMADWRIRPLSKEMLYYARSDTHYLLYVYDMMRNELVKQSRRGDPDGDLV 414
Query: 313 TEVYKRSYDVCRQLYE----KELLSENSYLHIYGLQG--AGLNAQQLAVVAGLCEWRDVI 366
+ ++S + Q +E + + + G+ + ++Q AV L WRD
Sbjct: 415 EKALQKSKETSLQRHEPYTSDPVTGKGTRGWFNGISRIPSNFTSEQFAVFRELHRWRDET 474
Query: 367 ARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 426
AR +DES Y++ + L+E ++ +P++ +LR+L + ++ + ++ +IK + +
Sbjct: 475 ARREDESPMYIMSQQVLVEASRAMPSSPNELRKLFFHPSNPLKDGVNQLVRLIKRAREKG 534
Query: 427 ANFEVIAQKLKEERME 442
A + LK +R++
Sbjct: 535 AEGPTLMDVLKADRVD 550
>gi|46123343|ref|XP_386225.1| hypothetical protein FG06049.1 [Gibberella zeae PH-1]
Length = 807
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 129/362 (35%), Positives = 187/362 (51%), Gaps = 21/362 (5%)
Query: 69 QEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDIG-DVEAVKPPSLEQ 127
+E IV+N A P ++ HP ++ V K + + E + ++
Sbjct: 173 KESLNIVLNEAGTP-------------QYQHPYEHEIVRMAYPKRVSREAEPIMYQPVDT 219
Query: 128 TPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKL 187
T V+ + + E+ +L E AVDLEH+ +RS++GL LMQISTR +D++VDTL+
Sbjct: 220 TEATYVDTYEGVLEMLGELMKAKEIAVDLEHHDFRSYVGLVSLMQISTREKDWIVDTLQP 279
Query: 188 RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLE 247
L +VF +P KV HGA DI+WLQRD G+Y+ +FDT A L SL
Sbjct: 280 WRHKLEVLNQVFTNPKIVKVFHGAYMDIIWLQRDLGLYVNGLFDTFFACGQLNYPAKSLA 339
Query: 248 YLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
YLL F +A+K+YQ ADWR+RPLP EML YAR DTHYLLYIYD ++ +L + +++
Sbjct: 340 YLLSKFVDFDADKKYQLADWRLRPLPQEMLYYARSDTHYLLYIYDRVRNELVAASDKTDA 399
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENS-------YLHIYGLQGAGLNAQQLAVVAGLC 360
+ ++S + YE E + +I+ +++Q +V L
Sbjct: 400 DKDLIGRALEKSREQSLSRYEHPDYDEETGEGSRGWSSYIFKNSHMAFDSEQFSVFRALW 459
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK 420
+WRD AR +DEST +VL NR + EIA+ P A L LL S + IK
Sbjct: 460 KWRDDTARKEDESTNFVLGNRDISEIARINPPDAKALHSLLPLNASLARSRFNEIWGYIK 519
Query: 421 NS 422
S
Sbjct: 520 ES 521
>gi|242767043|ref|XP_002341292.1| exosome component 3'-5' exonuclease [Talaromyces stipitatus ATCC
10500]
gi|218724488|gb|EED23905.1| exosome complex exonuclease Rrp6, putative [Talaromyces stipitatus
ATCC 10500]
Length = 771
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/322 (38%), Positives = 173/322 (53%), Gaps = 29/322 (9%)
Query: 119 AVKPP----SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIS 174
V PP +E T V+ + + E+ +LK E AVDLEH+ ++ GL LMQIS
Sbjct: 213 VVAPPVEFGPVETTQAVWVDTPEGVAEMVEELKKAKEIAVDLEHHDVHTYYGLVSLMQIS 272
Query: 175 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
TR +D+VVDTL+ + L EVF DP KV HG+ DIVWLQRD G+Y+ ++FDT
Sbjct: 273 TRDKDWVVDTLQPWREDLQRLNEVFTDPNILKVFHGSTMDIVWLQRDLGLYVVSLFDTYH 332
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
A+ L + SL++LL + A+K+YQ ADWR+RPL DEML+YAR DTHYLLYIYD +
Sbjct: 333 AAVALGFPKRSLKFLLEKYAHYEADKKYQMADWRLRPLTDEMLKYARADTHYLLYIYDCL 392
Query: 295 KIKL--SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG----- 347
+ +L S PK ++ + V +RS Q YE+ + G QGAG
Sbjct: 393 RNELLEKSTPKRNQ-----IDYVLERSKTEALQRYERPVYD------TLGGQGAGGWYDL 441
Query: 348 -------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+Q AV + EWRD +AR +DE V P L +A +P L +
Sbjct: 442 LSRNSGQFTKEQFAVFKAVHEWRDRVAREEDEGLQCVFPRHVLFRVAVAMPVDKHTLFKT 501
Query: 401 LKSKHSYIERYMGPVLSIIKNS 422
L ++ + +L IIK +
Sbjct: 502 LSPVTLIVKDRVTELLDIIKKA 523
>gi|444314737|ref|XP_004178026.1| hypothetical protein TBLA_0A07170 [Tetrapisispora blattae CBS 6284]
gi|387511065|emb|CCH58507.1| hypothetical protein TBLA_0A07170 [Tetrapisispora blattae CBS 6284]
Length = 771
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 123/300 (41%), Positives = 170/300 (56%), Gaps = 33/300 (11%)
Query: 113 DIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQ 172
+I D KP E T ++ + L +L L+ E AVDLEH+ RS+ G+TCLMQ
Sbjct: 223 EIRDPTPYKP--WETTSAIWIDTKESLADLLMDLRKQSEIAVDLEHHDLRSYYGITCLMQ 280
Query: 173 ISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 232
ISTR +D++VDT+ LR + L E+F +P KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 281 ISTREQDYIVDTISLRDDLI-VLNEIFTNPNITKVFHGASMDIIWLQRDLGLYIVSLFDT 339
Query: 233 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 292
AS+ L L R+SL YLL ++ +K+YQ ADWR RPL + ML YAR DTH+LL I+D
Sbjct: 340 FHASKALGLARHSLAYLLENYASFKTSKKYQLADWRRRPLTNNMLAYARSDTHFLLNIFD 399
Query: 293 ------IMKIKLSSMPKESENSDTPLTEVYKRSYDVCR-----------QLYEKELLSEN 335
I + KL+ + ES N V KR ++ + L EKE
Sbjct: 400 QLRNTLIKQNKLAGVLHESRN-------VAKRRFEYLKFRPTVPLPNLYTLIEKE-APWK 451
Query: 336 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 395
S L Y +Q ++ +V L EWRD+IAR DDES Y++P + LI + PT ++
Sbjct: 452 SLLIQYNIQD-----EKEILVQKLWEWRDMIARRDDESPRYIMPTQVLISLISYTPTDSS 506
>gi|326431455|gb|EGD77025.1| hypothetical protein PTSG_07367 [Salpingoeca sp. ATCC 50818]
Length = 848
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 168/294 (57%), Gaps = 10/294 (3%)
Query: 129 PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLR 188
P V V L+++ + LK E AVDLE + RS+ G TCLMQ+STRT DF++DTL LR
Sbjct: 262 PATFVNTVDQLQDVLSALKGEREVAVDLEAHNVRSYQGFTCLMQVSTRTRDFLIDTLALR 321
Query: 189 VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
+ EV + V+HGAD DI+WLQRD G+Y+ +F A RVL + SL Y
Sbjct: 322 GHL-----EVLNECLC--VLHGADSDILWLQRDHGLYIVCLFVCLFAMRVLGYPKYSLAY 374
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
LL H ++ +K +Q +DWR+RPLP +M YA+ DTHYLL +D +K +L + + +EN+
Sbjct: 375 LLKHLFHLSLDKRHQLSDWRIRPLPADMCVYAQADTHYLLDAHDALKAEL--LERGNENA 432
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
+ L V+ RS D+C Q YE E + +Y Q L + LA+ L WRD +AR
Sbjct: 433 NL-LRSVFTRSTDICLQRYEVPKYDEEQAMRLYNRQSLALTPKGLAIFRALHAWRDAVAR 491
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
+DES YV+ + L +A+ PT +++ + + + + ++ I N+
Sbjct: 492 REDESPRYVMEDHMLFSLARNAPTQPSQVFAICQPTPTLVRMNAHTIIETITNA 545
>gi|154278361|ref|XP_001539994.1| exosome component 3'-5' exonuclease [Ajellomyces capsulatus NAm1]
gi|150413579|gb|EDN08962.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 807
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 168/304 (55%), Gaps = 9/304 (2%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
E T V+ ++ + + A+LK V E A+DLEH+ S+ GL CLMQ+STR +D++VDT
Sbjct: 224 FETTTATFVDTLEGIHSMLAELKEVTEIAIDLEHHDAHSYHGLVCLMQLSTRDKDWIVDT 283
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LK + L EVF DP KV+HG+ D++WLQRD G+Y+ +FDT A+ L +
Sbjct: 284 LKPWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIVGLFDTYHAAVALNYPKK 343
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYIYD ++ + + +
Sbjct: 344 SLKFLLEKFVNFQAEKKYQIADWRLRPLLPGMFDYARSDTHYLLYIYDHIR---NDLIEH 400
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQGAGLNAQQLAVVAG 358
S S+ + V +RS Q YE+ + + + + + + +Q AV
Sbjct: 401 STPSNNLIDYVLERSKQEALQRYERPVYNAETGEGRIGWRDMLVRNSTLFSREQFAVFRA 460
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 418
+ +WRD IAR +DE YVL ++L +IA +P L R + + ++ +
Sbjct: 461 VHQWRDKIARFEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPVSPLVRARASELVQV 520
Query: 419 IKNS 422
IK +
Sbjct: 521 IKKA 524
>gi|151945630|gb|EDN63871.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
gi|190407342|gb|EDV10609.1| exosome complex exonuclease RRP6 [Saccharomyces cerevisiae RM11-1a]
gi|207341289|gb|EDZ69386.1| YOR001Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256274006|gb|EEU08922.1| Rrp6p [Saccharomyces cerevisiae JAY291]
gi|259149485|emb|CAY86289.1| Rrp6p [Saccharomyces cerevisiae EC1118]
Length = 733
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 190/347 (54%), Gaps = 32/347 (9%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
V+ +L+ + LK+ E AVDLEH+ YRS+ G+ CLMQISTR D++VDTLKLR +
Sbjct: 216 VDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLH 275
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT AS+ + L R+SL YLL +
Sbjct: 276 -ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLEN 334
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK------ESE 306
F +K+YQ ADWR+RPL M YAR DTH+LL IYD ++ KL K ES
Sbjct: 335 FANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESR 394
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI-------YGLQGAGLNAQQLAVVAGL 359
N V KR ++ + Y S Y I + + ++ +V L
Sbjct: 395 N-------VAKRRFEYSK--YRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVREL 445
Query: 360 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
+WRD+IAR DDES +V+PN+ L + PT + L ++ + + ++I
Sbjct: 446 YQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLI 505
Query: 420 KNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDTSSNLKIPNV 464
+++++N N EE + S ET+ ++L+T S +I +V
Sbjct: 506 RDALRNIKN-------TNEEATPIPSSETKADGILLETISVPQIRDV 545
>gi|414886886|tpg|DAA62900.1| TPA: hypothetical protein ZEAMMB73_296177 [Zea mays]
Length = 960
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/278 (41%), Positives = 158/278 (56%), Gaps = 11/278 (3%)
Query: 123 PSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVV 182
P + T + V L+ LA L FAVD E + RSFLG T LMQIST+ ED+++
Sbjct: 132 PEMSAT-YNWVHTETQLEHLARLLGEERAFAVDTEQHSIRSFLGYTALMQISTQNEDYLI 190
Query: 183 DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE 242
DT+ L +G LR VF + + K+ HGAD DI+WLQRDF IY+ NMFDT +A +L
Sbjct: 191 DTIALHDVMG-ILRPVFANSSICKIFHGADNDILWLQRDFHIYVVNMFDTAKACEILLKP 249
Query: 243 RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 302
+ SL YLL +C V +K Q DWR+RPL EM+ YAR D HYLLYI + + +L +
Sbjct: 250 QKSLAYLLEVYCEVTTDKTMQREDWRLRPLTPEMIEYARTDAHYLLYIANCLASELHAKA 309
Query: 303 KESENSDTPLTEVYKRSYDVCRQLYEKEL-----LSENSYLHIYGLQGAGLNAQQLA--- 354
S + E RS VC QLY KE+ S + + LQ G ++++ +
Sbjct: 310 YTSSDKINFFFEASHRSNMVCMQLYSKEIESPPGASSATSILSRNLQTHGFDSKKSSEVK 369
Query: 355 -VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+V C WRD++AR DES YVLP++ + +A LP
Sbjct: 370 DLVWKFCAWRDLMARMHDESLRYVLPDQAIAALAVSLP 407
>gi|6324574|ref|NP_014643.1| Rrp6p [Saccharomyces cerevisiae S288c]
gi|14195186|sp|Q12149.1|RRP6_YEAST RecName: Full=Exosome complex exonuclease RRP6; AltName:
Full=Ribosomal RNA-processing protein 6
gi|1150996|gb|AAC49480.1| hypothetical protein UNC733 [Saccharomyces cerevisiae]
gi|1420088|emb|CAA99189.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285814890|tpg|DAA10783.1| TPA: Rrp6p [Saccharomyces cerevisiae S288c]
Length = 733
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 190/347 (54%), Gaps = 32/347 (9%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
V+ +L+ + LK+ E AVDLEH+ YRS+ G+ CLMQISTR D++VDTLKLR +
Sbjct: 216 VDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLH 275
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT AS+ + L R+SL YLL +
Sbjct: 276 -ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLEN 334
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK------ESE 306
F +K+YQ ADWR+RPL M YAR DTH+LL IYD ++ KL K ES
Sbjct: 335 FANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESR 394
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI-------YGLQGAGLNAQQLAVVAGL 359
N V KR ++ + Y S Y I + + ++ +V L
Sbjct: 395 N-------VAKRRFEYSK--YRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVREL 445
Query: 360 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
+WRD+IAR DDES +V+PN+ L + PT + L ++ + + ++I
Sbjct: 446 YQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLI 505
Query: 420 KNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDTSSNLKIPNV 464
+++++N N EE + S ET+ ++L+T S +I +V
Sbjct: 506 RDALRNIKN-------TNEEATPIPSSETKADGILLETISVPQIRDV 545
>gi|323335702|gb|EGA76985.1| Rrp6p [Saccharomyces cerevisiae Vin13]
Length = 733
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 190/347 (54%), Gaps = 32/347 (9%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
V+ +L+ + LK+ E AVDLEH+ YRS+ G+ CLMQISTR D++VDTLKLR +
Sbjct: 216 VDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLH 275
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT AS+ + L R+SL YLL +
Sbjct: 276 -ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLEN 334
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK------ESE 306
F +K+YQ ADWR+RPL M YAR DTH+LL IYD ++ KL K ES
Sbjct: 335 FANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESR 394
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI-------YGLQGAGLNAQQLAVVAGL 359
N V KR ++ + Y S Y I + + ++ +V L
Sbjct: 395 N-------VAKRRFEYSK--YRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVREL 445
Query: 360 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
+WRD+IAR DDES +V+PN+ L + PT + L ++ + + ++I
Sbjct: 446 YQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVXGVVSLTNGVTEHVRQNAKLLANLI 505
Query: 420 KNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDTSSNLKIPNV 464
+++++N N EE + S ET+ ++L+T S +I +V
Sbjct: 506 RDALRNIKN-------TNEEATPIPSSETKADGILLETISVPQIRDV 545
>gi|255712831|ref|XP_002552698.1| KLTH0C11066p [Lachancea thermotolerans]
gi|238934077|emb|CAR22260.1| KLTH0C11066p [Lachancea thermotolerans CBS 6340]
Length = 735
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 169/291 (58%), Gaps = 21/291 (7%)
Query: 150 DEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMH 209
+E A+DLEH+ YR++ G+TCLMQISTR +D+++DT+ LR + L EVF DP KV+H
Sbjct: 235 NEIAIDLEHHDYRTYYGITCLMQISTREKDWLIDTIALRDDLW-ILNEVFTDPKITKVLH 293
Query: 210 GADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRV 269
GA DI+WLQRD G+Y+ ++FDT ASR+L ++SL YLL + +K+YQ +DWRV
Sbjct: 294 GAFMDIIWLQRDLGLYIVSLFDTYHASRLLGSPKHSLAYLLERYAHFKTSKKYQLSDWRV 353
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
RPLP + YAR DTH+LL IYD M+ L K L++V S +V ++ +E
Sbjct: 354 RPLPKALKAYARADTHFLLNIYDNMRNSLIEQNK--------LSQVLHDSRNVAKRRFEF 405
Query: 330 ELLSENSYL-HIYG-----------LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYV 377
H++ + + + +V L EWRD++AR DDES YV
Sbjct: 406 TTFRPKIVTSHVFSPIEREDPWRTLMFQYNIPQSKSLLVRRLYEWRDMVARRDDESPRYV 465
Query: 378 LPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 428
+PN+ L+ +A PTT A + +I + + +IK S+++++N
Sbjct: 466 IPNQLLVSLAVNAPTTPALIMATSTFVTEHIRQNAKSLALLIKKSLESSSN 516
>gi|349581166|dbj|GAA26324.1| K7_Rrp6p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 733
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 128/340 (37%), Positives = 186/340 (54%), Gaps = 32/340 (9%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
V+ +L+ + LK+ E AVDLEH+ YRS+ G+ CLMQISTR D++VDTLKLR +
Sbjct: 216 VDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLH 275
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT AS+ + L R+SL YLL +
Sbjct: 276 -ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLEN 334
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK------ESE 306
F +K+YQ ADWR+RPL M YAR DTH+LL IYD ++ KL K ES
Sbjct: 335 FANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESR 394
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI-------YGLQGAGLNAQQLAVVAGL 359
N V KR ++ + Y S Y I + + ++ +V L
Sbjct: 395 N-------VAKRRFEYSK--YRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVREL 445
Query: 360 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
+WRD+IAR DDES +V+PN+ L + PT + L ++ + + ++I
Sbjct: 446 YQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLI 505
Query: 420 KNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDTSS 457
+++++N N EE + S ET+ ++L+T S
Sbjct: 506 RDALRNIKN-------TNEEATPIPSSETKADGILLETIS 538
>gi|358058978|dbj|GAA95376.1| hypothetical protein E5Q_02030 [Mixia osmundae IAM 14324]
Length = 768
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 140/410 (34%), Positives = 197/410 (48%), Gaps = 43/410 (10%)
Query: 65 ITKPQEEYKIVVNNAN-QPFQHVWLQK-------------SEDSGRFIHPLDNLSVLDFV 110
+ KPQ + VNNA Q F+ + K + +S + H ++ L +L
Sbjct: 140 LEKPQIHFSRPVNNARGQLFRPLLTSKPHALVAYDPATYDTSESNPYSHEIEALPLLASP 199
Query: 111 DKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVD--EFAVDLEHNQYRSFLGLT 168
D ++ S TPF V+ + L L +LK D E A+DLEH+ +RS++G
Sbjct: 200 DNLPSEISKKAIDSFSSTPFTYVDTAEQLDRLLQELKRPDHAEIAIDLEHHDFRSYVGFV 259
Query: 169 CLMQISTRTEDFVVDTLKLRVQ-VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLC 227
CLMQISTR+ D++VDTL V+ L EVF DP K KVMHGA D++WLQRDFG+Y+
Sbjct: 260 CLMQISTRSHDWIVDTLVSEVRDRLESLNEVFADPAKVKVMHGAQSDVIWLQRDFGLYIV 319
Query: 228 NMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL 287
N+FDT A+ VL + SL LL + +K YQ ADWR+RPLP EM+ YAR DTHYL
Sbjct: 320 NLFDTYHATVVLSYGQRSLASLLTKYTHFVPDKRYQLADWRLRPLPQEMIDYARSDTHYL 379
Query: 288 LYIYD-----IMKIKLSSMPKES-ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIY 341
L IYD ++ KL P+ + + S+T L V +RS V Q Y S L
Sbjct: 380 LNIYDHLRRALIATKLDPTPEHALDGSETLLQRVDRRSRIVASQAYHGSDYDYESGLGAN 439
Query: 342 GLQG--------------------AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNR 381
G +G + + A WRD +AR DES Y++ +
Sbjct: 440 GWRGLVRVMNKGAEYRVNLAKGETSSGRGPEFAAFRAAHSWRDQLARELDESPRYIMSHH 499
Query: 382 TLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEV 431
+ + PT A + + R + +IK ++ EV
Sbjct: 500 LVCRLGTVRPTRPADVLACCSVASQTVLRRASELAQVIKAALDTPQATEV 549
>gi|51013151|gb|AAT92869.1| YOR001W [Saccharomyces cerevisiae]
Length = 733
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 134/352 (38%), Positives = 191/352 (54%), Gaps = 42/352 (11%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
V+ +L+ + LK+ E AVDLEH+ YRS+ G+ CLMQISTR D++VDTLKLR +
Sbjct: 216 VDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLH 275
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT AS+ + L R+SL YLL +
Sbjct: 276 -ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLEN 334
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK------ESE 306
F +K+YQ ADWR+RPL M YAR DTH+LL IYD ++ KL K ES
Sbjct: 335 FANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESR 394
Query: 307 NSD------------TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 354
N TP +EVY EKE S I Q + ++
Sbjct: 395 NVAKRRFGYSKYRPLTPSSEVYSP--------IEKE-----SPWKILMYQ-YNIPPEREV 440
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 414
+V L +WRD+IAR DDES +V+PN+ L + PT + L ++ +
Sbjct: 441 LVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKL 500
Query: 415 VLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDTSSNLKIPNV 464
+ ++I+++++N N EE + S ET+ ++L+T S +I +V
Sbjct: 501 LANLIRDALRNIKN-------TNEEATPIPSSETKADGILLETISVPQIRDV 545
>gi|425768291|gb|EKV06818.1| Exosome complex exonuclease Rrp6, putative [Penicillium digitatum
Pd1]
gi|425770373|gb|EKV08846.1| Exosome complex exonuclease Rrp6, putative [Penicillium digitatum
PHI26]
Length = 754
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 166/317 (52%), Gaps = 15/317 (4%)
Query: 117 VEAVKPPSLEQTPFK-----LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLM 171
V V PP +E PF+ V+ + +KE+ +LK E A+DLEH+ S+ GL LM
Sbjct: 205 VYQVSPP-VEYLPFESTTATFVDTLDGVKEMLKELKKAKEIAIDLEHHDVHSYHGLVSLM 263
Query: 172 QISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 231
QISTR +D+V+DTL+ + L EVF DP KV+HG+ DI+WLQRD G+Y+ MFD
Sbjct: 264 QISTRGKDWVIDTLQPWREDLQILNEVFADPKILKVLHGSTMDIIWLQRDLGLYVVGMFD 323
Query: 232 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 291
T A+ L + SL++LL F A+K YQ ADWR RPLP M YAR DTHYLLYIY
Sbjct: 324 TFHAASALGFPKRSLKFLLSKFVNFEADKRYQTADWRARPLPPAMFDYARSDTHYLLYIY 383
Query: 292 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------NSYLHIYGLQG 345
D ++ L E + + V +RS Q YE+ + + +
Sbjct: 384 DRLRNDLIDNSTEEASH---IDYVNERSKHEALQRYERPVYDAVNGHGPGGWYDLLWRNS 440
Query: 346 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 405
L +Q AV + +WRD +ARA+DE V P L ++A +P L R L
Sbjct: 441 GNLPKEQFAVFKAVHQWRDEVARAEDEGWQCVFPKHMLFKLATIMPLDMGSLFRTLSPMT 500
Query: 406 SYIERYMGPVLSIIKNS 422
+ +L +IK +
Sbjct: 501 PIAKERSHDLLEVIKQA 517
>gi|183231928|ref|XP_650756.2| exosome component 10 [Entamoeba histolytica HM-1:IMSS]
gi|169802269|gb|EAL45368.2| exosome component 10, putative [Entamoeba histolytica HM-1:IMSS]
gi|449704625|gb|EMD44835.1| exosome complex exonuclease RRP6, putative [Entamoeba histolytica
KU27]
Length = 517
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 175/309 (56%), Gaps = 14/309 (4%)
Query: 122 PPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV 181
P S E+TP V ++ L+E+ L V++FAVD+EH+ S+ G CL+QISTR+ D++
Sbjct: 179 PLSFEKTPLIYVNTLELLQEMIVSLNHVNQFAVDVEHHSEHSYYGFVCLLQISTRSSDYI 238
Query: 182 VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL 241
+DT+ LR + L + F +P +KV HG D D++WL +FG+Y+ N D+GQ +R LKL
Sbjct: 239 IDTITLRDSIT-LLNDPFTNPNIEKVFHGCDFDMIWLSYNFGLYVVNCIDSGQCARALKL 297
Query: 242 ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
+ SL+YLL +C V+A+K+YQ ADWR+RPL EM+ YAR DTHYLLYI D ++
Sbjct: 298 QHFSLKYLLQKYCNVDADKKYQLADWRLRPLTKEMIEYARGDTHYLLYIIDQLR------ 351
Query: 302 PKESENSDT-PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 360
+E D L EV +S ++C +L+ + S++ + + + + Q L
Sbjct: 352 ---NECIDAGVLEEVLNKSNELCLRLFRPTVCSDDVIERV--ARRSWIKKTQFDTFKKLY 406
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY-IERYMGPVLSII 419
RD IAR +DES V+ L I +LPT KLR K Y +E + + +
Sbjct: 407 LLRDKIARIEDESPEAVINMTMLSNIVNELPTDLEKLRLCCLPKVPYFVEMHASEFILLT 466
Query: 420 KNSMQNAAN 428
K Q N
Sbjct: 467 KQEHQIKLN 475
>gi|414886885|tpg|DAA62899.1| TPA: hypothetical protein ZEAMMB73_296177 [Zea mays]
Length = 951
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 116/278 (41%), Positives = 158/278 (56%), Gaps = 11/278 (3%)
Query: 123 PSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVV 182
P + T + V L+ LA L FAVD E + RSFLG T LMQIST+ ED+++
Sbjct: 132 PEMSAT-YNWVHTETQLEHLARLLGEERAFAVDTEQHSIRSFLGYTALMQISTQNEDYLI 190
Query: 183 DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE 242
DT+ L +G LR VF + + K+ HGAD DI+WLQRDF IY+ NMFDT +A +L
Sbjct: 191 DTIALHDVMG-ILRPVFANSSICKIFHGADNDILWLQRDFHIYVVNMFDTAKACEILLKP 249
Query: 243 RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 302
+ SL YLL +C V +K Q DWR+RPL EM+ YAR D HYLLYI + + +L +
Sbjct: 250 QKSLAYLLEVYCEVTTDKTMQREDWRLRPLTPEMIEYARTDAHYLLYIANCLASELHAKA 309
Query: 303 KESENSDTPLTEVYKRSYDVCRQLYEKEL-----LSENSYLHIYGLQGAGLNAQQLA--- 354
S + E RS VC QLY KE+ S + + LQ G ++++ +
Sbjct: 310 YTSSDKINFFFEASHRSNMVCMQLYSKEIESPPGASSATSILSRNLQTHGFDSKKSSEVK 369
Query: 355 -VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+V C WRD++AR DES YVLP++ + +A LP
Sbjct: 370 DLVWKFCAWRDLMARMHDESLRYVLPDQAIAALAVSLP 407
>gi|68490644|ref|XP_710869.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
gi|46432124|gb|EAK91626.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
Length = 786
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 116/296 (39%), Positives = 166/296 (56%), Gaps = 26/296 (8%)
Query: 109 FVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLT 168
+ D + +A+ P T V+ V++L+++ +LK E AVDLEH+ YRS+ G+
Sbjct: 211 YPDAILAKSDAIPPKDWSTTKAIWVDTVEELQKMVQELKKSTEIAVDLEHHDYRSYYGIV 270
Query: 169 CLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 228
CLMQIS R +D+++DTL LR + L EVF DP KV HGA DI+WLQRD G+Y+ +
Sbjct: 271 CLMQISNREQDWIIDTLALRDDLT-VLNEVFADPDIVKVFHGAFMDIIWLQRDLGLYVVS 329
Query: 229 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 288
+FDT ASR L R SL YLL + +K+YQ ADWR+RPL ML YAR DTH+LL
Sbjct: 330 LFDTFHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYARSDTHFLL 389
Query: 289 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE--KELLSENSYLHIYGLQGA 346
+IYD +K KL K L++V S V ++ +E K N++ +
Sbjct: 390 FIYDQLKNKLIDAEK--------LSQVLYDSRQVAKRRFEYTKYRPMANTFSNKVTCPVM 441
Query: 347 GLNAQQ---------------LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 387
N ++ VV L +WRD++A+ DES Y++PN+ L+ +A
Sbjct: 442 AFNPKEPWGSIVSQYNVPHFKRPVVEVLYKWRDLMAKKQDESVRYIMPNQLLVSLA 497
>gi|68490669|ref|XP_710857.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
gi|46432110|gb|EAK91613.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
Length = 785
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 116/296 (39%), Positives = 166/296 (56%), Gaps = 26/296 (8%)
Query: 109 FVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLT 168
+ D + +A+ P T V+ V++L+++ +LK E AVDLEH+ YRS+ G+
Sbjct: 211 YPDAILAKSDAIPPKDWSTTKAIWVDTVEELQKMVQELKKSTEIAVDLEHHDYRSYYGIV 270
Query: 169 CLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 228
CLMQIS R +D+++DTL LR + L EVF DP KV HGA DI+WLQRD G+Y+ +
Sbjct: 271 CLMQISNREQDWIIDTLALRDDLT-VLNEVFADPDIVKVFHGAFMDIIWLQRDLGLYVVS 329
Query: 229 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 288
+FDT ASR L R SL YLL + +K+YQ ADWR+RPL ML YAR DTH+LL
Sbjct: 330 LFDTFHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYARSDTHFLL 389
Query: 289 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE--KELLSENSYLHIYGLQGA 346
+IYD +K KL K L++V S V ++ +E K N++ +
Sbjct: 390 FIYDQLKNKLIDAEK--------LSQVLYDSRQVAKRRFEYTKYRPMANTFSNKVTCPVM 441
Query: 347 GLNAQQ---------------LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 387
N ++ VV L +WRD++A+ DES Y++PN+ L+ +A
Sbjct: 442 AFNPKEPWGSIVSQYNVPHFKRPVVEVLYKWRDLMAKKQDESVRYIMPNQLLVSLA 497
>gi|392296333|gb|EIW07435.1| Rrp6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 733
Score = 209 bits (533), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 186/340 (54%), Gaps = 32/340 (9%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
V+ +L+ + LK+ E AVDLEH+ YRS+ G+ CLMQISTR D++VDTLKLR +
Sbjct: 216 VDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLH 275
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT AS+ + L R+SL YLL +
Sbjct: 276 -ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLEN 334
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK------ESE 306
F +K+YQ ADWR+RPL M YAR DTH+LL IYD ++ KL K ES
Sbjct: 335 FANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESR 394
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI-------YGLQGAGLNAQQLAVVAGL 359
N V KR ++ + Y S Y I + + ++ +V L
Sbjct: 395 N-------VAKRRFEYSK--YRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVREL 445
Query: 360 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
+WRD++AR DDES +V+PN+ L + PT + L ++ + + ++I
Sbjct: 446 YQWRDLVARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLI 505
Query: 420 KNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDTSS 457
+++++N N EE + S ET+ ++L+T S
Sbjct: 506 RDALRNIKN-------TNEEATPIPSSETKADGILLETIS 538
>gi|346326755|gb|EGX96351.1| exosome complex exonuclease Rrp [Cordyceps militaris CM01]
Length = 852
Score = 209 bits (533), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 115/287 (40%), Positives = 165/287 (57%), Gaps = 15/287 (5%)
Query: 126 EQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTL 185
E T K V+ +D+ E+ LK DE A+DLEH+ +R++ GL LMQISTR +D++VDTL
Sbjct: 218 ETTTAKWVDTYEDVLEMLKDLKRADEIAIDLEHHDFRTYTGLVSLMQISTRQQDWIVDTL 277
Query: 186 KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS 245
+ L EVF DP+ KV HGA D++WLQRD G+Y+ +FDT A + L S
Sbjct: 278 QPWRHKLEVLNEVFADPSIVKVFHGAYMDMIWLQRDLGLYVNGLFDTYFACQQLGYSGRS 337
Query: 246 LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES 305
L +LL F +A+K+YQ ADWR+RP+P+EML YAR DTHYLL+IYD ++ L S S
Sbjct: 338 LAFLLSKFADFDADKQYQLADWRIRPIPEEMLYYARSDTHYLLHIYDQVRNDLVS----S 393
Query: 306 ENSDTPLTEVYKRSYDVCRQL---------YEKELLSENSYLHIYGLQGAGL--NAQQLA 354
N P ++ R+ + R+L Y +E + + Y L+ + L +A Q
Sbjct: 394 SNRSVPEQDLISRALEKSRELSLSRHVHSGYNEETGEGSRGWYNYVLKHSHLAYDAAQFT 453
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 401
+ + +WRD AR +DES +VL L ++ + P A L L+
Sbjct: 454 LFKTIWKWRDDTARKEDESPNFVLGTNHLADVCRASPPDAKALHSLM 500
>gi|365763245|gb|EHN04775.1| Rrp6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 733
Score = 209 bits (532), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 189/347 (54%), Gaps = 32/347 (9%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
V+ +L+ + L + E AVDLEH+ YRS+ G+ CLMQISTR D++VDTLKLR +
Sbjct: 216 VDTSTELESMLEDLXNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLH 275
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT AS+ + L R+SL YLL +
Sbjct: 276 -ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLEN 334
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK------ESE 306
F +K+YQ ADWR+RPL M YAR DTH+LL IYD ++ KL K ES
Sbjct: 335 FANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESR 394
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI-------YGLQGAGLNAQQLAVVAGL 359
N V KR ++ + Y S Y I + + ++ +V L
Sbjct: 395 N-------VAKRRFEYSK--YRPLTXSSEVYSPIEKESPWKILMYQYNIPPEREVLVREL 445
Query: 360 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
+WRD+IAR DDES +V+PN+ L + PT + L ++ + + ++I
Sbjct: 446 YQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLI 505
Query: 420 KNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDTSSNLKIPNV 464
+++++N N EE + S ET+ ++L+T S +I +V
Sbjct: 506 RDALRNIKN-------TNEEATPIPSSETKADGILLETISVPQIRDV 545
>gi|167392672|ref|XP_001740248.1| exosome complex exonuclease RRP6 [Entamoeba dispar SAW760]
gi|165895708|gb|EDR23337.1| exosome complex exonuclease RRP6, putative [Entamoeba dispar
SAW760]
Length = 517
Score = 209 bits (532), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 175/309 (56%), Gaps = 14/309 (4%)
Query: 122 PPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV 181
P S E+TP V ++ L+E+ L V++FAVD+EH+ S+ G CL+QISTR+ D++
Sbjct: 179 PLSFEKTPLVYVNTLELLQEMIISLNHVNQFAVDVEHHSEHSYYGFVCLLQISTRSSDYI 238
Query: 182 VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL 241
+DT+ LR + L + F +P +KV HG D D++WL +FG+Y+ N D+GQ +R LKL
Sbjct: 239 IDTITLRDSIT-LLNDPFTNPNIEKVFHGCDFDMIWLSYNFGLYVVNCIDSGQCARALKL 297
Query: 242 ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
+ SL+YLL +C V+A+K+YQ ADWR+RPL EM+ YAR DTHYLLYI D ++
Sbjct: 298 QHFSLKYLLQKYCNVDADKKYQLADWRLRPLTKEMIEYARGDTHYLLYIIDQLR------ 351
Query: 302 PKESENSDT-PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 360
+E D L EV +S ++C +L+ + S++ + + + + Q L
Sbjct: 352 ---NECIDVGILEEVLNKSNELCLRLFRPTVCSDDVIERV--ARRSWIKKTQFDTFKKLY 406
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY-IERYMGPVLSII 419
RD IAR +DES ++ L I +LPT KLR K Y +E + + +
Sbjct: 407 LLRDKIARIEDESPESIINMTMLSNIVNELPTDLEKLRLCCLPKVPYFVEMHASEFILLT 466
Query: 420 KNSMQNAAN 428
K Q N
Sbjct: 467 KQEHQIKLN 475
>gi|407036010|gb|EKE37956.1| exosome component 10, putative [Entamoeba nuttalli P19]
Length = 517
Score = 209 bits (531), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 175/309 (56%), Gaps = 14/309 (4%)
Query: 122 PPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV 181
P S E+TP V ++ L+E+ L V++FAVD+EH+ S+ G CL+QISTR+ D++
Sbjct: 179 PLSFEKTPLIYVNTLELLQEMIISLNHVNQFAVDVEHHSEHSYYGFVCLLQISTRSSDYI 238
Query: 182 VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL 241
+DT+ LR + L + F +P +KV HG D D++WL +FG+Y+ N D+GQ +R LKL
Sbjct: 239 IDTITLRDSIT-LLNDPFTNPNIEKVFHGCDFDMIWLSYNFGLYVVNCIDSGQCARALKL 297
Query: 242 ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
+ SL+YLL +C V+A+K+YQ ADWR+RPL EM+ YAR DTHYLLYI D ++
Sbjct: 298 QHFSLKYLLQKYCNVDADKKYQLADWRLRPLTKEMIEYARGDTHYLLYIIDQLR------ 351
Query: 302 PKESENSDT-PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 360
+E D L EV +S ++C +L+ + S++ + + + + Q L
Sbjct: 352 ---NECIDAGVLEEVLNKSNELCLRLFRPTVCSDDVIERV--ARRSWIKKTQFDTFKKLY 406
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY-IERYMGPVLSII 419
RD IAR +DES ++ L I +LPT KLR K Y +E + + +
Sbjct: 407 LLRDKIARIEDESPESIINMTMLSNIVNELPTDLEKLRLCCLPKVPYFVEMHASEFILLT 466
Query: 420 KNSMQNAAN 428
K Q N
Sbjct: 467 KQEHQIKLN 475
>gi|363750290|ref|XP_003645362.1| hypothetical protein Ecym_3030 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888996|gb|AET38545.1| Hypothetical protein Ecym_3030 [Eremothecium cymbalariae
DBVPG#7215]
Length = 747
Score = 209 bits (531), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 136/367 (37%), Positives = 199/367 (54%), Gaps = 46/367 (12%)
Query: 65 ITKPQEEYKIVVNNAN-QPFQ-------HVWLQKSEDS----------GRFIHP----LD 102
I KPQ ++KI V+N+ PF+ H E S + HP +D
Sbjct: 131 IVKPQLQFKIPVDNSECHPFKPLLKVKPHALKPLEEVSSLTVETECVPAHYPHPYEYEID 190
Query: 103 NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYR 162
N D V + E ++P + ++ V+ + L ++ LK+V E AVDLEH+ YR
Sbjct: 191 NQPYDDSV---LTIKEPIEPSNWDENEPIWVDNITALNDMLNGLKNVKEIAVDLEHHDYR 247
Query: 163 SFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDF 222
S+ GL CLMQISTR D++VDT+ LR Q L E+F DP+ KV HGA DI+WLQRD
Sbjct: 248 SYYGLVCLMQISTRESDWLVDTIALR-QDLQVLNEIFTDPSILKVFHGAFMDIIWLQRDL 306
Query: 223 GIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARE 282
G+Y+ ++FDT ASR L ++SL YLL F +K+YQ ADWR+RPL M YAR
Sbjct: 307 GLYVVSLFDTYHASRALGFPKHSLAYLLETFANFKTSKKYQLADWRIRPLSKPMKTYARA 366
Query: 283 DTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-----ELLSENSY 337
DTH+LL IYD ++ +S+ KE + L+ V S +V ++ +E ++LS +
Sbjct: 367 DTHFLLNIYDKLR---NSLIKEDK-----LSGVLHASRNVAKRRFEYTSFRPKVLSPTVF 418
Query: 338 LHI-----YGLQGAGLNAQQLA--VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
I + + N + ++ L +WRD++AR DDES YV+PN+ L+ +
Sbjct: 419 SPIEKDDPWRTLMSQYNVPDIKEPLMRKLYKWRDMVARKDDESVRYVMPNQLLVSLVTLA 478
Query: 391 PTTAAKL 397
P+ + L
Sbjct: 479 PSDPSGL 485
>gi|354544046|emb|CCE40768.1| hypothetical protein CPAR2_108030 [Candida parapsilosis]
Length = 771
Score = 209 bits (531), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 133/372 (35%), Positives = 194/372 (52%), Gaps = 63/372 (16%)
Query: 65 ITKPQEEYKIVVNNANQ-PFQHVW------LQKSEDSGRFIHPL----DNLSVLD----- 108
+ KPQ ++K+ V+N+ Q PF+ LQ E + +P D++ V+D
Sbjct: 136 VEKPQSKFKVSVDNSEQEPFKPKITGKPNALQPWESVNKLTNPAPVYEDSIEVVDPPFYA 195
Query: 109 -----------FVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLE 157
+ + + V P T V+ + L ++ +L+ E AVDLE
Sbjct: 196 HPYEYEIDTQPYPKSILSKSDPVPPKDWSSTSAIWVDTTEGLNKMIDELQQSTEIAVDLE 255
Query: 158 HNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVW 217
H+ YRS+ G+ CLMQIS R +D+++DTL LR + L +VF DP KV+HGA DI+W
Sbjct: 256 HHDYRSYYGIVCLMQISNREKDWIIDTLVLRDDLS-VLNKVFTDPKIIKVLHGAFMDIIW 314
Query: 218 LQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEML 277
LQRD G+Y+ ++FDT ASR L + SL+YLL F +K+YQ ADWR+RPLP ML
Sbjct: 315 LQRDLGLYIVSLFDTYHASRQLGFSKFSLQYLLDTFAHFRTSKKYQLADWRIRPLPKPML 374
Query: 278 RYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK---ELLSE 334
YAR DTH+LLYI+D ++ KL K L +V S V ++ +E LS
Sbjct: 375 AYARSDTHFLLYIFDQLRNKLIDSDK--------LAQVLFDSRQVAKRRFEYTKFRPLSN 426
Query: 335 N-------------------SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 375
N S ++ Y + A + VV L +WRD+IAR +DES
Sbjct: 427 NLGSKVSCPVMAANPKEPWGSLMYQYNVP-----AFKRPVVEQLYKWRDLIARKEDESVR 481
Query: 376 YVLPNRTLIEIA 387
Y++PN+ L+ +A
Sbjct: 482 YIMPNQLLVSLA 493
>gi|443898900|dbj|GAC76233.1| exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100
[Pseudozyma antarctica T-34]
Length = 917
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/351 (35%), Positives = 187/351 (53%), Gaps = 29/351 (8%)
Query: 121 KPPSL--EQTPFKLVEEVKDLKELAAKLKS--VDEFAVDLEHNQYRSFLGLTCLMQISTR 176
K PSL + +PF+ V ++ L L V E A+DLEH+ YR++ G+ CLMQ+STR
Sbjct: 329 KDPSLSTDTSPFQWVSTKAQIEALRDHLDEPRVTEIAIDLEHHSYRTYQGIVCLMQLSTR 388
Query: 177 TEDFVVDTLKLRV-QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQA 235
D+++DTL V Q L F P K KV+HGA+ D++WLQRD G+YL N+FDT A
Sbjct: 389 WGDWIIDTLSDEVRQHAELLNSAFTHPDKVKVLHGANHDVLWLQRDLGLYLVNLFDTYHA 448
Query: 236 SRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
+ VL + L YL+ +C +A+K YQ ADWR+RPLP EML YAR DTH LLYIYD ++
Sbjct: 449 TNVLLFPSHGLNYLMARYCNFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLYIYDNLR 508
Query: 296 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE--------NSYLHIYGLQGA- 346
+L E+ D + +V+ RS +V Y KE S +G + A
Sbjct: 509 HEL----MEAGGVDA-IRDVFVRSKEVAMATYAKEEWDAEGETREGWRSVWRKWGGEAAL 563
Query: 347 --------GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 398
G ++ +V L WRD +AR DES Y+L L+ +A + PT +
Sbjct: 564 GTEERREVGQMKREERLVRALHRWRDGVAREQDESPRYILGANNLMMLAARAPTKVEGVL 623
Query: 399 RLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETE 449
+ + +++ + +I +Q A + +K +E R+ +A+ T+
Sbjct: 624 ACIPPNAAQLKKRAAELAQLIAKEVQ--AWQKDHDEKSEERRIRIAASLTK 672
>gi|366995964|ref|XP_003677745.1| hypothetical protein NCAS_0H00860 [Naumovozyma castellii CBS 4309]
gi|342303615|emb|CCC71396.1| hypothetical protein NCAS_0H00860 [Naumovozyma castellii CBS 4309]
Length = 755
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 188/349 (53%), Gaps = 33/349 (9%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLR--VQ 190
V+ V L+ + L++ E AVDLEH+ YR++ G+TCLMQISTR D+++DTL LR +Q
Sbjct: 219 VDTVSQLQSIMPDLEASTEIAVDLEHHDYRTYYGITCLMQISTRKNDYLIDTLALREDLQ 278
Query: 191 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLL 250
+ L VF +P KV HGA DI+WLQRD G+Y+ +FDT ASR + L ++SL YLL
Sbjct: 279 I---LNNVFANPMITKVFHGAFMDIIWLQRDLGLYVVGLFDTFHASRAMGLPKHSLAYLL 335
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK------IKLSSMPKE 304
F +K+YQ ADWR+RPL M YAR DTH+LL I+D M+ KL+ + KE
Sbjct: 336 EKFAQFKTSKKYQLADWRIRPLSKAMHAYARADTHFLLNIFDQMRNSLIEQNKLAGVLKE 395
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI---------YGLQGAGLNAQQLAV 355
S N V KR ++ + ++L N ++ + + Q+ +
Sbjct: 396 SRN-------VAKRRFEYSS--FRPKVLQTNGLVYSPIEKDDPWKTIMFQYNIPPQKEPL 446
Query: 356 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPV 415
+ L +WRD IAR DDES +V+PN+ L+ + P A + + S Y+ +
Sbjct: 447 LKELYQWRDKIARRDDESPRFVMPNQLLVSLVAYTPIDAPGVVSVSNSVTDYVRSNSKIL 506
Query: 416 LSIIKNSMQNAANFEVIAQKLKEERMEVASEE----TEVLVLDTSSNLK 460
++IKN + + + + + EE + V E ++ L + NLK
Sbjct: 507 ANLIKNCLAKMKDNKFLDNNVAEEGISVVPETGHDLSQKLTIHQLQNLK 555
>gi|238879034|gb|EEQ42672.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 786
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 165/296 (55%), Gaps = 26/296 (8%)
Query: 109 FVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLT 168
+ D + + + P T V+ V++L+++ +LK E AVDLEH+ YRS+ G+
Sbjct: 211 YPDAILAKSDPIPPKDWSSTKAIWVDTVEELQKMVQELKKSTEIAVDLEHHDYRSYYGIV 270
Query: 169 CLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 228
CLMQIS R +D+++DTL LR + L EVF DP KV HGA DI+WLQRD G+Y+ +
Sbjct: 271 CLMQISNREQDWIIDTLALRDDLT-VLNEVFADPDIVKVFHGAFMDIIWLQRDLGLYVVS 329
Query: 229 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 288
+FDT ASR L R SL YLL + +K+YQ ADWR+RPL ML YAR DTH+LL
Sbjct: 330 LFDTFHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYARSDTHFLL 389
Query: 289 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE--KELLSENSYLHIYGLQGA 346
+IYD +K KL K L++V S V ++ +E K N++ +
Sbjct: 390 FIYDQLKNKLIDAEK--------LSQVLYDSRQVAKRRFEYTKYRPMANTFSNKVTCPVM 441
Query: 347 GLNAQQ---------------LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 387
N ++ VV L +WRD++A+ DES Y++PN+ L+ +A
Sbjct: 442 AFNPKEPWGSIVSQYNVPHFKRPVVEVLYKWRDLMAKKQDESVRYIMPNQLLVSLA 497
>gi|255730563|ref|XP_002550206.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240132163|gb|EER31721.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 786
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 145/424 (34%), Positives = 208/424 (49%), Gaps = 71/424 (16%)
Query: 1 MDVSFDE----FSKARGENGEGDGNEGGFQLV-----YGKNKKKGDIVGGSAPASVKVKD 51
+D FD+ F +++ ++ GD + +Q + KN+K I + V +
Sbjct: 96 LDSIFDKIEMTFDQSKRKSPSGDDKDKQYQYLDEGNTTIKNEKSQRIQKPQLKFKIPVDN 155
Query: 52 RKEKSKVPFHVPTITKPQEEYKIVVNNANQPFQH-------VWLQKSEDSGRFIHP---- 100
+E PF TKP NA PF+ VW ED+ I P
Sbjct: 156 SEE---TPFKPRLTTKP---------NALVPFKDTMVNPEPVW----EDTVEIIDPPYYA 199
Query: 101 ------LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAV 154
+DN + +K + E + P T V+ V+ L ++ +LK +E AV
Sbjct: 200 QPYEYEIDNQP---YPEKVLTKSEPISPQDWSSTKATWVDTVEALNKMIEELKKSEEIAV 256
Query: 155 DLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRD 214
DLEH+ +R++ G+ CLMQIS R +D+++DTL LR ++ L EVF +P KV HGA D
Sbjct: 257 DLEHHDFRTYYGIVCLMQISNRDQDWIIDTLALRDELTE-LNEVFTNPNIVKVFHGAFMD 315
Query: 215 IVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPD 274
I+WLQRD G+Y+ ++FDT ASR L L R SL YLL H+ +K+YQ ADWR+RPL
Sbjct: 316 IIWLQRDLGLYIVSLFDTYHASRALGLSRFSLAYLLEHYAQFKTSKKYQLADWRIRPLSS 375
Query: 275 EMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE------ 328
ML YAR DTH+LLYIYD +K KL K L V S V ++ +E
Sbjct: 376 PMLAYARSDTHFLLYIYDQLKNKLIDSDK--------LRGVLHDSRQVAKRRFEYTKFRP 427
Query: 329 -KELLSENSYLHIYGL---QGAGLNAQQLAV-------VAGLCEWRDVIARADDESTGYV 377
L S+ + + G Q V V L +WRD +AR +DES ++
Sbjct: 428 LANLFSKQVTCPVMAFNPKEPWGSIVSQYNVPPFKKPLVEVLYKWRDAMARKEDESVRFI 487
Query: 378 LPNR 381
+PN+
Sbjct: 488 MPNQ 491
>gi|403218486|emb|CCK72976.1| hypothetical protein KNAG_0M01230 [Kazachstania naganishii CBS
8797]
Length = 738
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 132/365 (36%), Positives = 193/365 (52%), Gaps = 42/365 (11%)
Query: 65 ITKPQEEYKIVVNNA-NQPFQHVWLQKS------EDSGRFIHPLDNL-----SVLDF--- 109
ITKPQ + V+N+ +QPF+ + +K ++S + + +N+ + D+
Sbjct: 130 ITKPQLHFSRPVDNSESQPFKPLLTEKPNALKPLKESLQMVPATENIPSHYPNPYDYEIS 189
Query: 110 ---VDKDIGDVEAVKP--PSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSF 164
+ DI + A P P E P V+ + L+ L LK E A+DLEH+ YRS+
Sbjct: 190 NQEYNNDILETRAPIPSTPWHESEPV-WVDSTEGLQSLLKDLKKYKELAIDLEHHDYRSY 248
Query: 165 LGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGI 224
G+ CLMQISTR D++VDT+ LR ++ L +VF DP KV HGA DI+WLQRD G+
Sbjct: 249 YGIVCLMQISTRDTDYLVDTIALRDELH-ILNQVFTDPMVTKVFHGAFMDIIWLQRDLGL 307
Query: 225 YLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 284
Y+ ++FDT AS+ L ++SL YLL +K+YQ ADWR+RPL M YAR DT
Sbjct: 308 YIVSLFDTFHASKALGFPKHSLAYLLETLANFKTSKKYQLADWRIRPLSKPMSVYARADT 367
Query: 285 HYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-----ELLSENSYLH 339
H+LL I+D M+ +L D L V S V ++ +E +L + +
Sbjct: 368 HFLLNIFDQMRNQLIK--------DNKLAGVLGESRKVAKRRFEYSKFRPKLAQPDVFTP 419
Query: 340 IYG-------LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 392
I + + ++ +V L EWRD IAR DDES Y++PN+ LI ++ PT
Sbjct: 420 IEKESPWRTLMFQYNVTPEKEELVKALYEWRDTIARRDDESPRYIMPNQLLISLSAYTPT 479
Query: 393 TAAKL 397
L
Sbjct: 480 DPVSL 484
>gi|408396401|gb|EKJ75559.1| hypothetical protein FPSE_04202 [Fusarium pseudograminearum CS3096]
Length = 1034
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/305 (38%), Positives = 167/305 (54%), Gaps = 7/305 (2%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
++ T V+ + + E+ +L E AVDLEH+ +RS++GL LMQISTR +D++VDT
Sbjct: 444 VDTTEATYVDTYEGVLEMLGELMKAKEIAVDLEHHDFRSYVGLVSLMQISTREKDWIVDT 503
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+ L +VF +P KV HGA DI+WLQRD G+Y+ +FDT A L
Sbjct: 504 LQPWRHKLEVLNQVFTNPKIVKVFHGAYMDIIWLQRDLGLYVNGLFDTFFACGQLNYPAK 563
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL YLL F +A+K+YQ ADWR+RPLP EML YAR DTHYLLYIYD ++ +L + +
Sbjct: 564 SLAYLLSKFVDFDADKKYQLADWRLRPLPQEMLYYARSDTHYLLYIYDRVRNELVAASDK 623
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENS-------YLHIYGLQGAGLNAQQLAVVA 357
++ + ++S + YE + + +I+ +++Q +V
Sbjct: 624 TDADKDLIGRALEKSREQSLSRYEHPDYDQETGEGSRGWSSYIFKNSHMAFDSEQFSVFR 683
Query: 358 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLS 417
L +WRD AR +DEST +VL NR + EIA+ P A L LL S +
Sbjct: 684 ALWKWRDDTARKEDESTNFVLGNRDISEIARINPPDAKALHSLLPLNASLARSRFNEIWG 743
Query: 418 IIKNS 422
IK S
Sbjct: 744 YIKES 748
>gi|254579989|ref|XP_002495980.1| ZYRO0C07678p [Zygosaccharomyces rouxii]
gi|238938871|emb|CAR27047.1| ZYRO0C07678p [Zygosaccharomyces rouxii]
Length = 741
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 148/443 (33%), Positives = 217/443 (48%), Gaps = 59/443 (13%)
Query: 28 VYGKNKKKGDIVGGSAP-----ASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNNA-NQ 81
++ K+ + DI+ G AP A + + D +P I KPQ ++ ++N
Sbjct: 88 LFEKSDRSLDILRGRAPDRKGAALMYLDDAARSDMIP--AKRILKPQVRFQRPIDNTETH 145
Query: 82 PFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDIGDVEAVKPPSLE-------QTPFKLVE 134
PF+ + E+ + PL + L D+DI + +P E ++ K+ E
Sbjct: 146 PFKPLL----ENKPHALRPLSDCVRLVQADEDIPE-HYPQPYEYEIENQEYNESILKIAE 200
Query: 135 EV----------------KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTE 178
+ + L + LK E AVDLEH+ YRS+ G+ CLMQ+STR
Sbjct: 201 PIPSKPWDGSEPVWVDNKESLDSMLQDLKKSTEIAVDLEHHDYRSYYGIVCLMQVSTRQT 260
Query: 179 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 238
D++VDTL LR + L EVF +P KV HGA DI+WLQRD G+Y+ ++FDT ASR
Sbjct: 261 DYLVDTLALRDDLV-VLNEVFANPLIVKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASRA 319
Query: 239 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD------ 292
L R+SL YLL F +K+YQ ADWRVRPL M YAR DTH+LL IYD
Sbjct: 320 LGFPRHSLAYLLETFASFKTSKKYQLADWRVRPLSKAMSAYARADTHFLLNIYDQLRNKL 379
Query: 293 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 352
I++ KL+ + ES N V KRS+ + Y ++ + + Y + G + Q
Sbjct: 380 IIENKLAGVLAESRN-------VAKRSFQYSK--YRPKVPNSSVYSPVDRADGWKVLMNQ 430
Query: 353 LAV-------VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 405
+ V L EWRD IAR DDES YV+PN+ L + P + + +
Sbjct: 431 YNIPLEKEILVKNLYEWRDTIARRDDESPRYVMPNQLLAYLVDYTPLDPTGVISVSPTVT 490
Query: 406 SYIERYMGPVLSIIKNSMQNAAN 428
++ + ++I S+Q A+
Sbjct: 491 DHVRTNAKALANLIVKSLQQIAD 513
>gi|171679581|ref|XP_001904737.1| hypothetical protein [Podospora anserina S mat+]
gi|170939416|emb|CAP64644.1| unnamed protein product [Podospora anserina S mat+]
Length = 628
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/281 (40%), Positives = 154/281 (54%), Gaps = 12/281 (4%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTL---K 186
F+ E +K L + K VD + H+ +R++ GL LMQISTR +D++VDTL +
Sbjct: 8 FESREPIKYLDVESTKPIWVDTLRLIWTHHDFRTYTGLLSLMQISTREKDWIVDTLVPWR 67
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
R++V L EVF DP KV HGA D+VWLQRD G+Y+ +FDT AS VL SL
Sbjct: 68 HRLEV---LNEVFADPGIVKVFHGAFMDVVWLQRDLGVYVVGLFDTHHASTVLGYGGGSL 124
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
+LL F G A+K +Q ADWR+RPLP EML YAR DTHYLLY+YD+++ L++
Sbjct: 125 AFLLKKFVGFEADKRWQLADWRIRPLPAEMLYYARADTHYLLYVYDMIRNDLAAAAHTVH 184
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGL------QGAGLNAQQLAVVAGLC 360
P+ V +S YE E + L G N ++ AV L
Sbjct: 185 PDGKPIERVIAKSKKTALSRYENPAFDEETGLGDRGWYNYLARSSYVYNKEEFAVFRALW 244
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 401
WRD AR +DESTG+V+ + EI + +P+ L LL
Sbjct: 245 NWRDKTAREEDESTGFVMKEHVMAEIVRVMPSDKKALWSLL 285
>gi|164655640|ref|XP_001728949.1| hypothetical protein MGL_3943 [Malassezia globosa CBS 7966]
gi|159102837|gb|EDP41735.1| hypothetical protein MGL_3943 [Malassezia globosa CBS 7966]
Length = 849
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 120/304 (39%), Positives = 166/304 (54%), Gaps = 31/304 (10%)
Query: 114 IGDVEAVKPPSLEQ------TPFKLVEEVKDLKELAAKLKS--VDEFAVDLEHNQYRSFL 165
+G+ EA P +E F V+ + +++L L+ V E AVDLEH+ RS+
Sbjct: 225 VGNAEAPVPLRIENPGSSQPCDFVWVDSAEKVRQLQKHLEEERVTEIAVDLEHHNQRSYQ 284
Query: 166 GLTCLMQISTRTEDFVVDTLKLRV-QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGI 224
G+ CLMQISTR D++VDTL V + L F P K V+HGAD DI+WLQRD G+
Sbjct: 285 GIVCLMQISTRWGDWIVDTLVDEVRESAELLNTAFTHPDKVLVLHGADHDILWLQRDLGL 344
Query: 225 YLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 284
Y+ N+FDT QA+R L+ SL +LL + A+K +Q ADWR+RPLP EML YAR DT
Sbjct: 345 YVTNLFDTFQAARALQFGALSLAFLLLRYTNFEADKRFQTADWRIRPLPREMLFYARSDT 404
Query: 285 HYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE-----NSYLH 339
H LLY+YD ++ +L + EV+ RS ++Y KE E +
Sbjct: 405 HALLYVYDCLRNELL-----QRGGPLAVKEVFDRSKPTASKVYAKEPWDERGNSRGGWKS 459
Query: 340 IYGLQGAGL-NAQQLA-----------VVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 387
++ G L A Q A +V L WRD +AR +DES +V+P R LI++A
Sbjct: 460 LWIRMGGDLARASQDAPPDAPLGREERIVRRLHHWRDQVARKEDESPAFVMPPRVLIQLA 519
Query: 388 KQLP 391
+ P
Sbjct: 520 LRPP 523
>gi|190344443|gb|EDK36119.2| hypothetical protein PGUG_00217 [Meyerozyma guilliermondii ATCC
6260]
Length = 755
Score = 206 bits (524), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 120/315 (38%), Positives = 173/315 (54%), Gaps = 28/315 (8%)
Query: 92 EDSGRFIHPLD-NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVD 150
+D F HP + + L++ + + E KP T VE DL ++ + L S
Sbjct: 186 KDPDYFPHPYEYEIDTLEYPESVLEISEPKKPKDWTSTSAIWVETESDLSQMVSDLSSQT 245
Query: 151 EFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
E AVDLEH+ YRS+LG+ CLMQIS+R +D+++DTLKLR + L E+F +P KV HG
Sbjct: 246 EIAVDLEHHDYRSYLGIVCLMQISSREKDWIIDTLKLRDSLV-VLNEIFANPNIVKVFHG 304
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
A DI+WLQRD G+Y+ ++FDT AS+ L L R SL YLL ++ +K+YQ ADWR+R
Sbjct: 305 AFMDIIWLQRDLGLYVVSLFDTYHASKKLGLPRFSLAYLLENYANFKTSKKYQLADWRMR 364
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PL ML YAR DTH+LLY+YD ++ +L S + + EV S V ++ +E
Sbjct: 365 PLSGPMLSYARSDTHFLLYVYDQLRNQLLS------SGSQKMKEVLHESRQVAKRRFEFT 418
Query: 331 ---------------LLSENS---YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
+++ N+ Y I + L +V L WRD A+ DE
Sbjct: 419 RFRPTSVSGSKVSCPIMAPNAKEPYSSI--MNQFNLPNHTRPIVEALYLWRDAKAKECDE 476
Query: 373 STGYVLPNRTLIEIA 387
S YV+PN+ L+ +
Sbjct: 477 SVRYVMPNQLLVNFS 491
>gi|241948847|ref|XP_002417146.1| exosome component 3'-5' exonuclease [Candida dubliniensis CD36]
gi|223640484|emb|CAX44736.1| exosome complex exonuclease RRP6, putative [Candida dubliniensis
CD36]
Length = 776
Score = 206 bits (523), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 163/296 (55%), Gaps = 26/296 (8%)
Query: 109 FVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLT 168
+ D + + + P T V+ V++L ++ +LK E AVDLEH+ YRS+ G+
Sbjct: 208 YPDAILAKSDPIPPKDWSTTKAIWVDTVEELHKMVPELKKSTEIAVDLEHHDYRSYYGIV 267
Query: 169 CLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 228
CLMQIS+R +D++VDTL LR + L EVF DP KV HGA DI+WLQRD G+Y+ +
Sbjct: 268 CLMQISSREQDWIVDTLVLRDDLT-VLNEVFADPNIVKVFHGAFMDIIWLQRDLGLYVVS 326
Query: 229 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 288
+FDT ASR L R SL YLL + +K+YQ ADWR+RPL ML YAR DTH+LL
Sbjct: 327 LFDTYHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYARSDTHFLL 386
Query: 289 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE--KELLSENSYLHIYGLQGA 346
+IYD +K KL K L +V S V ++ +E K N++ +
Sbjct: 387 FIYDQLKNKLIDANK--------LAQVLYDSRQVAKRRFEYTKYRPMANTFSNKVTCPVM 438
Query: 347 GLNAQQ---------------LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 387
N ++ VV L +WRD++A+ DES Y++PN+ L+ +
Sbjct: 439 AFNPKEPWGSIVSQYNVPHFKRPVVEVLYKWRDLMAKQQDESVRYIMPNQLLVSLV 494
>gi|255566405|ref|XP_002524188.1| 3'-5' exonuclease, putative [Ricinus communis]
gi|223536557|gb|EEF38203.1| 3'-5' exonuclease, putative [Ricinus communis]
Length = 977
Score = 205 bits (522), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 120/287 (41%), Positives = 166/287 (57%), Gaps = 26/287 (9%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ VE LKEL +L + FAVD E + RSFLG T L+QIST+ ED+++DT+ L
Sbjct: 123 YVWVETESQLKELTDELSNQSVFAVDTEQHSLRSFLGFTALVQISTQKEDYLLDTIALHD 182
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
+G L VF +P KV HG D DI+WLQRDF IY+ N+FDT +A VL + SL YL
Sbjct: 183 AMG-ILGAVFANPKICKVFHGGDNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYL 241
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS- 308
L +CGV+ NK Q DWR RPLP EML+YA D HYLLYI + +L K+++NS
Sbjct: 242 LETYCGVSTNKLLQREDWRQRPLPAEMLQYALTDAHYLLYIASCLIAELKQ--KDNDNSY 299
Query: 309 ---DTPL---TEVYKRSYDVCRQLYEKE------------LLSENSYLHIYGLQGAGLNA 350
D L E +RS +C QLY KE L S YL+ G G+ ++
Sbjct: 300 SYPDVKLKFILEASRRSNMICMQLYTKEVEEFPGDAAASSLFSR--YLNDQG--GSSVSC 355
Query: 351 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
+ +V LC WR+++AR DE +VL ++ ++ +A ++ T A ++
Sbjct: 356 EIQDLVRRLCTWRELMARVHDEGLRFVLSDQAIVSLANKVSTNAMEI 402
>gi|448116900|ref|XP_004203126.1| Piso0_000726 [Millerozyma farinosa CBS 7064]
gi|359383994|emb|CCE78698.1| Piso0_000726 [Millerozyma farinosa CBS 7064]
Length = 757
Score = 205 bits (522), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 142/426 (33%), Positives = 212/426 (49%), Gaps = 71/426 (16%)
Query: 2 DVSFDEFSKARGENGEGDGNEGGFQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPFH 61
D+ DE S++ G +L+Y ++K D+V + S + F
Sbjct: 99 DIKLDELSRSNA----GKSEPSNTKLMYLEDK---DVVNNN-------------SNISFP 138
Query: 62 VPTITKPQEEYKIVVNNANQ-PFQHVW------LQKSEDSGRFIHP-------------- 100
I+KPQ+ +++ V+ + PF+ L ++S R +P
Sbjct: 139 TKVISKPQDNFRLKVDTTEKNPFKPKISYKPNALISYDESLRLRNPGGCSDFSFYPQPYE 198
Query: 101 --LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEH 158
+DN +FV I E ++P ++T V+ + L + +LK+ E AVDLEH
Sbjct: 199 YEIDNQPYPEFV---IQKKEPIEPKPWKETSATWVDSKEGLLSMVNELKNSTEIAVDLEH 255
Query: 159 NQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWL 218
+ YRS+ GL CLMQIS R D++VDTL LR + + E+F +P KV HGA DI+WL
Sbjct: 256 HDYRSYYGLVCLMQISNRQNDWLVDTLALRDDLE-VMNEIFTNPQILKVFHGAFMDIIWL 314
Query: 219 QRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLR 278
QRD G+Y+ ++FDT A++ L L + SL YLL F +K+YQ ADWR+RPL M
Sbjct: 315 QRDLGLYIVSLFDTYHAAKKLGLSKFSLAYLLETFAKFKTSKKYQLADWRLRPLSPAMKA 374
Query: 279 YAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL---SEN 335
YAR DTH+LLYIYD M+ KL EN D L EV S V ++ +E S
Sbjct: 375 YARSDTHFLLYIYDQMRNKLL------EN-DGRLQEVLYESRQVAKRRFEYTKFRPTSGT 427
Query: 336 SYLHIYG--------------LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNR 381
+ +Y + + A + ++ L EWRD +A+ DES Y++PN+
Sbjct: 428 TTALVYSPLMVSNPREPYSSIMSQYNVPAFKKPLIEILFEWRDRVAKQQDESVRYIMPNQ 487
Query: 382 TLIEIA 387
L+ +A
Sbjct: 488 LLVTLA 493
>gi|50286743|ref|XP_445801.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525107|emb|CAG58720.1| unnamed protein product [Candida glabrata]
Length = 737
Score = 205 bits (522), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 128/392 (32%), Positives = 210/392 (53%), Gaps = 42/392 (10%)
Query: 65 ITKPQEEYKIVVNNA-NQPFQHVWLQKS------EDSGRFIHPLDNL----------SVL 107
I+KPQ +K V+N+ + PF+ + ++K E+S + + +++ +L
Sbjct: 129 ISKPQLNFKTPVDNSESHPFKPLLIEKPNALKSIEESTQLVLATEDIPEHFQQPYEYEIL 188
Query: 108 D--FVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFL 165
+ + + + E + S T V+ + L+++ +LK E AVDLEH+ +RS+
Sbjct: 189 NQEYNNDILEKKEPIPSTSWVDTNAIWVDNINSLQDMMQELKKSSEIAVDLEHHDFRSYY 248
Query: 166 GLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIY 225
GL CLMQISTRT+D++VDT+ LR + L EVF +P KV HGA DI+WLQRD G+Y
Sbjct: 249 GLVCLMQISTRTQDYIVDTIALRDDLK-MLNEVFTNPLITKVFHGAFMDIIWLQRDLGLY 307
Query: 226 LCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTH 285
+ ++FDT AS+ L L ++SL YLL + +K+YQ ADWR RPL M+ YAR DTH
Sbjct: 308 IVSLFDTFHASKALGLPKHSLAYLLEKYANFKTSKKYQLADWRRRPLSKAMMAYARADTH 367
Query: 286 YLLYIYDIMKI------KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLH 339
+LL I+D M+ KL+ + +ES N V R ++ + Y+ ++ N +
Sbjct: 368 FLLNIFDQMRNGLISSGKLAGVLRESRN-------VALRRFEYSK--YKPKIPVANIFTP 418
Query: 340 IYG-------LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 392
+ + + + ++ L EWRD++AR DDES YV+PN+ L+ + P
Sbjct: 419 VEKESPWRTLMYQYNIPVDKEPLIRELYEWRDMMARRDDESPRYVMPNQLLVSLVAYGPV 478
Query: 393 TAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 424
+ + ++ R + ++IK ++
Sbjct: 479 DPISVVSVSSVVTDHVRRNSKTLANLIKKKLE 510
>gi|342319925|gb|EGU11870.1| Hypothetical Protein RTG_02115 [Rhodotorula glutinis ATCC 204091]
Length = 966
Score = 205 bits (521), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 169/294 (57%), Gaps = 31/294 (10%)
Query: 124 SLEQTPFKLVEEVKDLKELAAKLKSVDE-----FAVDLEHNQYRSFLGLTCLMQISTRTE 178
S +TPF+ V + K L+++ A ++ V E A+DLEH+ +R++ G+TCL+Q+STR +
Sbjct: 267 SFTKTPFEWVGDEKALEKMVAGIRQVGEEGMKDLAIDLEHHDFRTWSGMTCLIQLSTRKK 326
Query: 179 DFVVDTLKLRVQVG-PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 237
D+++D + V+ L E F +P KV+HGA DIVWLQRDFG+Y+ +FDT A+
Sbjct: 327 DYIIDAIDPGVRENLESLNEFFTNPEWIKVLHGAKSDIVWLQRDFGLYIVGLFDTYHATH 386
Query: 238 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 297
VL ++SL LL + +K YQ ADWR+RPLP EML+YAR DTHYLL IYD +++
Sbjct: 387 VLGYAQHSLASLLDMYTDFEPDKRYQLADWRIRPLPKEMLQYARSDTHYLLSIYDHLRLA 446
Query: 298 LSSMPKESENSDTPLTEVYKRSYDVCRQLY----------------------EKELLSEN 335
L + S+ + +P+ +V+ RS V + +L + +
Sbjct: 447 LHAKGAASKETPSPIEDVFNRSIPVSAITFSLPPFDHETGHFESGFLVPLARHGQLKAYS 506
Query: 336 SYLHIYGL---QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
+ L + L G G +L V+ + WR+ +AR +DEST YVL + +++I
Sbjct: 507 TALAVPTLPIKTGWGPGEAKLEVLREVTRWREKVAREEDESTRYVLSLQGVLQI 560
>gi|299473136|emb|CBN78712.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1278
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 157/283 (55%), Gaps = 28/283 (9%)
Query: 151 EFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
E AVDLEH+ +R+FLG+ CLMQ+STR +D++VD LKLR ++G L VF DP KV HG
Sbjct: 335 EIAVDLEHHSFRTFLGVVCLMQLSTREQDYIVDPLKLRGEMGRLL-PVFSDPNIVKVFHG 393
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
+D D++WLQRD G+YL NMFDTGQA+R L L L +LL FC +K++Q +DWR+R
Sbjct: 394 SDSDVLWLQRDLGLYLVNMFDTGQAARQLGLPSFGLAHLLEKFCDFVPDKKHQLSDWRMR 453
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLP +ML + D+ E D + V S ++C + +EK
Sbjct: 454 PLPADML------------LIDL----------ERSGGDVAVKAVLDASREICLRRFEKP 491
Query: 331 LLSENSYLHIYGLQGAGLNAQQLA-----VVAGLCEWRDVIARADDESTGYVLPNRTLIE 385
E + + QG V++ L WRD+IARA+DES GYV+ +I
Sbjct: 492 AFQEKGWSEVLKRQGGNGVLDDFGDVPRRVLSALWSWRDMIARAEDESYGYVMSAYVMIR 551
Query: 386 IAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 428
+A++ P++ L ++++ +L I++N+ +A
Sbjct: 552 VARKCPSSRDDLEGCGNPLPRLVQQHAEDILEIVENAKDESAG 594
>gi|428169598|gb|EKX38530.1| hypothetical protein GUITHDRAFT_59898, partial [Guillardia theta
CCMP2712]
Length = 153
Score = 204 bits (518), Expect = 2e-49, Method: Composition-based stats.
Identities = 95/150 (63%), Positives = 110/150 (73%), Gaps = 1/150 (0%)
Query: 146 LKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKK 205
L EFAVDLEH+ RSF G TCLMQISTR +DF+VDT++LR + L F DP
Sbjct: 5 LSGCKEFAVDLEHHSLRSFQGFTCLMQISTREQDFIVDTIELRSCIH-LLLPAFTDPKIT 63
Query: 206 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNA 265
KV HGAD D+ WLQRDFG+Y+ NMFDTGQASRVL+ L YLLH FC A+K+YQ A
Sbjct: 64 KVFHGADSDVRWLQRDFGLYIVNMFDTGQASRVLEFPSYGLAYLLHRFCEEEADKQYQLA 123
Query: 266 DWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
DWRVRPL EML+YAR DTHYLLYIYD ++
Sbjct: 124 DWRVRPLTPEMLKYARMDTHYLLYIYDQLR 153
>gi|242050364|ref|XP_002462926.1| hypothetical protein SORBIDRAFT_02g034580 [Sorghum bicolor]
gi|241926303|gb|EER99447.1| hypothetical protein SORBIDRAFT_02g034580 [Sorghum bicolor]
Length = 760
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/274 (41%), Positives = 157/274 (57%), Gaps = 11/274 (4%)
Query: 128 TPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKL 187
T + V+ L+ LA L FAVD E + RSFLG T LMQIST+ +D+++DT+ L
Sbjct: 11 TTYNWVDTEAQLEHLARLLGEERAFAVDTEQHSIRSFLGYTALMQISTQNDDYLIDTIAL 70
Query: 188 RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLE 247
+G LR VF + + K+ HGAD D++WLQRDF IY+ NMFDT +A L + SL
Sbjct: 71 HDVMG-ILRPVFANSSICKIFHGADNDVLWLQRDFHIYVVNMFDTAKACETLSKPQKSLA 129
Query: 248 YLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE-SE 306
YLL +C V +K Q DWR+RPL EM+ YAR D HYLLYI + + +L + + S
Sbjct: 130 YLLEVYCEVTTDKTMQREDWRLRPLTPEMIEYARTDAHYLLYIANCLASELHAKACDTSS 189
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKEL-----LSENSYLHIYGLQGAGLNAQQLA----VVA 357
+ E RS VC QLY KE+ S + + LQ GL++++ + +V
Sbjct: 190 DKINFFFEASHRSNMVCMQLYAKEIECPPGASSAASILSRNLQTHGLDSKKSSEVKDLVW 249
Query: 358 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
C WRD++AR DES YVL ++ + +A LP
Sbjct: 250 KFCAWRDLMARMHDESLRYVLSDQAIAALAVSLP 283
>gi|50306309|ref|XP_453127.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642261|emb|CAH00223.1| KLLA0D01309p [Kluyveromyces lactis]
Length = 744
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 127/365 (34%), Positives = 193/365 (52%), Gaps = 38/365 (10%)
Query: 52 RKEKSKVPFHVPTIT------KPQEEYKIVVNNANQPFQ-HVWLQKSEDS--GRFIHPLD 102
R EK ++ F P KP EYK ++ QPF+ + + E+S + HP +
Sbjct: 128 RIEKPQLSFKTPVDNTELHPFKPLLEYK---PHSLQPFEISLKMVPEEESIPSHYPHPYE 184
Query: 103 -NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQY 161
+ + D + E + ++T V+ V+ L ++ +L E A+DLEH+ Y
Sbjct: 185 YEIDHQKYNDSILVATEPIPSKDWDETEAIWVDTVEGLNKMKDELSKATELAIDLEHHDY 244
Query: 162 RSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRD 221
RS+ G+ CLMQIS R D++VDT+ LR ++ L ++F DP KV+HGA DI+WLQRD
Sbjct: 245 RSYYGIVCLMQISDREHDWIVDTIALREELY-ILNDIFTDPNVTKVLHGAFMDIIWLQRD 303
Query: 222 FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAR 281
G+Y+ +FDT ASR+L ++SL YLL F +K+YQ ADWR+RPL ML YAR
Sbjct: 304 LGLYIVGLFDTYHASRMLGFPKHSLAYLLERFANFKTSKKYQLADWRIRPLTKPMLAYAR 363
Query: 282 EDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE----------- 330
DTH+LL I+D ++ L K +++V S V ++ +E
Sbjct: 364 ADTHFLLNIFDKLRNSLLEQNK--------MSDVLHESRKVAKRRFEYSSFRPKVPSSAV 415
Query: 331 ---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 387
+ + + +I + + A + ++ L EWRD IAR DDES YV+PN+ L+ +
Sbjct: 416 FSPIEKDEPWKNI--MFQYNIPASKELLLRRLYEWRDTIARRDDESPRYVMPNQLLVSLV 473
Query: 388 KQLPT 392
PT
Sbjct: 474 AGAPT 478
>gi|146421793|ref|XP_001486840.1| hypothetical protein PGUG_00217 [Meyerozyma guilliermondii ATCC
6260]
Length = 755
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 174/311 (55%), Gaps = 20/311 (6%)
Query: 92 EDSGRFIHPLD-NLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVD 150
+D F HP + + L++ + + +E KP T VE DL ++ + L S
Sbjct: 186 KDPDYFPHPYEYEIDTLEYPELVLEILEPKKPKDWTSTSAIWVETESDLSQMVSDLSSQT 245
Query: 151 EFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
E AVDLEH+ YRS+LG+ CLMQIS+R +D+++DTLKLR + L E+F +P KV HG
Sbjct: 246 EIAVDLEHHDYRSYLGIVCLMQISSREKDWIIDTLKLRDSLV-VLNEIFANPNIVKVFHG 304
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
A DI+WLQRD G+Y+ ++FDT AS+ L L R SL YLL ++ +K+YQ ADWR+R
Sbjct: 305 AFMDIIWLQRDLGLYVVSLFDTYHASKKLGLPRFSLAYLLENYANFKTSKKYQLADWRMR 364
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKL-SSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
PL ML YAR DTH+LLY+YD ++ +L SS ++ + +V KR ++ R +
Sbjct: 365 PLLGPMLSYARSDTHFLLYVYDQLRNQLLSSGSQKMKEVLHESRQVAKRRFEFTR--FRP 422
Query: 330 ELLS-------------ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
L+S + Y I + L +V L WRD A+ DE Y
Sbjct: 423 TLVSGSKVSCPIMAPNAKEPYSSI--MNQFNLPNHTRPIVEALYLWRDAKAKECDELVRY 480
Query: 377 VLPNRTLIEIA 387
V+PN+ L+ +
Sbjct: 481 VMPNQLLVNFS 491
>gi|365758455|gb|EHN00296.1| Rrp6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 734
Score = 202 bits (515), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 114/295 (38%), Positives = 165/295 (55%), Gaps = 25/295 (8%)
Query: 146 LKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKK 205
LK+ E AVDLEH+ YRS+ G+ CLMQ+STR D++VDT++LR + L EVF DP
Sbjct: 229 LKNASEIAVDLEHHDYRSYYGIVCLMQVSTRERDYLVDTIELRDALH-ILNEVFTDPLIV 287
Query: 206 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNA 265
KV HGA DI+WLQRD G+Y+ +FDT AS+ + L R+SL YLL +F +K+YQ A
Sbjct: 288 KVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLA 347
Query: 266 DWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQ 325
DWR RPL M YAR DTH+LL IYD ++ KL K L V S +V ++
Sbjct: 348 DWRARPLSKPMTAYARADTHFLLNIYDQLRNKLIESNK--------LAGVLYESRNVAKR 399
Query: 326 LYE----------KELLS----ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 371
+E E+ S EN + + + + +++ +V L WRD IAR DD
Sbjct: 400 RFEYSKHRPRTPSSEVYSPIEKENPWRVL--MYQYNITSEKEELVKDLYLWRDFIARRDD 457
Query: 372 ESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 426
ES +V+PN+ L + P + L ++ + + ++I+N+++N
Sbjct: 458 ESPRFVMPNQLLAALVAYAPIDVIGVVSLTNGVTEHVRQNAKVLANLIENALRNV 512
>gi|448119348|ref|XP_004203709.1| Piso0_000726 [Millerozyma farinosa CBS 7064]
gi|359384577|emb|CCE78112.1| Piso0_000726 [Millerozyma farinosa CBS 7064]
Length = 756
Score = 202 bits (515), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 133/372 (35%), Positives = 194/372 (52%), Gaps = 51/372 (13%)
Query: 56 SKVPFHVPTITKPQEEYKIVVN---------------NANQPF-QHVWLQKSEDSGRF-I 98
S V + +TKPQ+ ++ V+ NA + + + L+ + D G F
Sbjct: 133 SNVSYPTKVMTKPQDSFRFKVDTTEKSSFKPKISYKPNALVSYDESLRLRNAGDDGDFSF 192
Query: 99 HP------LDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEF 152
+P +DN +FV I E ++ S ++T ++ L + +L+S E
Sbjct: 193 YPQPYEYEIDNQPYPEFV---IQKKEPIEAQSWKETSATWIDSKDGLLRMVDELRSSTEI 249
Query: 153 AVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGAD 212
AVDLEH+ YRS+ GL CLMQIS R D++VDTL LR + L E+F +P KV HGA
Sbjct: 250 AVDLEHHDYRSYYGLVCLMQISNRQNDWLVDTLALRDDLE-VLNEIFTNPQILKVFHGAF 308
Query: 213 RDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 272
DI+WLQRD G+Y+ ++FDT A++ L L + SL YLL F +K+YQ ADWR+RPL
Sbjct: 309 MDIIWLQRDLGLYIVSLFDTYHAAKKLGLSKFSLAYLLESFAKFKTSKKYQLADWRLRPL 368
Query: 273 PDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL- 331
M YAR DTH+LLYIYD M+ KL EN D L EV S V ++ +E
Sbjct: 369 SPAMKAYARSDTHFLLYIYDQMRNKL------LEN-DGKLQEVLYESRQVAKRRFEYTKF 421
Query: 332 --LSENSYLHIYG--------------LQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 375
+S + +Y + + A + ++ L EWRD +A+ DES
Sbjct: 422 RPISSTTTALVYSPLMVSNPREPYSSIMSQYNVPAFKKPLIEILFEWRDRVAKRQDESVR 481
Query: 376 YVLPNRTLIEIA 387
Y++PN+ L+ +A
Sbjct: 482 YIMPNQLLVTLA 493
>gi|112491261|pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain
gi|112491264|pdb|2HBK|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn
gi|112491267|pdb|2HBL|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn, Zn, And Amp
gi|112491277|pdb|2HBM|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn, Zn, And Ump
Length = 410
Score = 202 bits (513), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 172/309 (55%), Gaps = 23/309 (7%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
V+ +L+ + LK+ E AVDLEH+ YRS+ G+ CLMQISTR D++VDTLKLR +
Sbjct: 90 VDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLH 149
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT AS+ + L R+SL YLL +
Sbjct: 150 -ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLEN 208
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD------IMKIKLSSMPKESE 306
F +K+YQ ADWR+RPL M AR DTH+LL IYD I KL+ + ES
Sbjct: 209 FANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNKLAGVLYESR 268
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI-------YGLQGAGLNAQQLAVVAGL 359
N V KR ++ + Y S Y I + + ++ +V L
Sbjct: 269 N-------VAKRRFEYSK--YRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVREL 319
Query: 360 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
+WRD+IAR DDES +V+PN+ L + PT + L ++ + + ++I
Sbjct: 320 YQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLI 379
Query: 420 KNSMQNAAN 428
+++++N N
Sbjct: 380 RDALRNIKN 388
>gi|401837803|gb|EJT41675.1| RRP6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 734
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 164/294 (55%), Gaps = 25/294 (8%)
Query: 146 LKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKK 205
LK+ E AVDLEH+ YRS+ G+ CLMQ+STR D++VDT++LR + L EVF DP
Sbjct: 229 LKNASEIAVDLEHHDYRSYYGIVCLMQVSTRERDYLVDTIELRDALH-ILNEVFTDPLIV 287
Query: 206 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNA 265
KV HGA DI+WLQRD G+Y+ +FDT AS+ + L R+SL YLL +F +K+YQ A
Sbjct: 288 KVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLA 347
Query: 266 DWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQ 325
DWR RPL M YAR DTH+LL IYD ++ KL K L V S +V ++
Sbjct: 348 DWRARPLSKPMTAYARADTHFLLNIYDQLRNKLIESNK--------LAGVLYESRNVAKR 399
Query: 326 LYE----------KELLS----ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 371
+E E+ S EN + + + + +++ +V L WRD IAR DD
Sbjct: 400 RFEYSKHRPRTPSSEVYSPIEKENPWRVL--MYQYNITSEKEELVKDLYLWRDFIARRDD 457
Query: 372 ESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQN 425
ES +V+PN+ L + P + L ++ + + ++I+N++ N
Sbjct: 458 ESPRFVMPNQLLAALVAYAPIDVIGVVSLTNGVTEHVRQNAKVLANLIENALGN 511
>gi|400601943|gb|EJP69568.1| 3'-5' exonuclease [Beauveria bassiana ARSEF 2860]
Length = 802
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 161/288 (55%), Gaps = 15/288 (5%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E T K V+ + + E+ +LK E A+DLEH+ +R++ GL LMQISTR +D++VDT
Sbjct: 217 VETTTAKWVDTYEGVLEMLQELKKSKELAIDLEHHDFRTYTGLVSLMQISTRQQDWIVDT 276
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+ L E F DP+ KV HGA D+VWLQRD G+Y+ +FDT A L
Sbjct: 277 LQPWRHKLEILNEAFADPSIIKVFHGAYMDMVWLQRDLGLYVNGLFDTFFACEQLGYSGR 336
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL +LL F +A+K+YQ ADWR+RP+P+EML YAR DTHYLL+IYD ++ L S
Sbjct: 337 SLAFLLSKFADFDADKQYQLADWRIRPIPEEMLYYARSDTHYLLHIYDQVRNDLVS---- 392
Query: 305 SENSDTPLTEVYKRSYDVCRQL---------YEKELLSENSYLHIYGLQGAGL--NAQQL 353
S N P ++ R+ + L Y++E + Y L+ + L +A Q
Sbjct: 393 SSNRSAPEQDLIGRALQKSKDLSLSRHVHAGYQEENGEGPRGWYNYLLKHSHLSYDAAQF 452
Query: 354 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 401
+ + +WRD AR +DES +VL L +I + P A L L+
Sbjct: 453 TMFKTIWKWRDDTARKEDESPNFVLGTNHLADICRANPPDAKALHSLM 500
>gi|344304844|gb|EGW35076.1| hypothetical protein SPAPADRAFT_53425 [Spathaspora passalidarum
NRRL Y-27907]
Length = 756
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 128/372 (34%), Positives = 198/372 (53%), Gaps = 64/372 (17%)
Query: 65 ITKPQEEYKIVVNNA-NQPFQ-------HVWLQKSEDSGRFIHPL----DNLSVLDFVDK 112
I+KPQ ++++ V+N+ + PF+ H L+ E+S + +P D++ ++D
Sbjct: 133 ISKPQLKFRVPVDNSESHPFKPRLDSKPHA-LKSFEESVKLFNPEPKYEDSIEIIDPPYY 191
Query: 113 DIGDV---------EAVKPPSLEQTPFK--------LVEEVKDLKELAAKLKSVDEFAVD 155
EA+ ++E P K V+ V++L ++ L+S E AVD
Sbjct: 192 PQPYEYEIDNQPYPEAILQSAVEPIPSKDWSTTEAIWVDTVEELTKMVTVLQSSTEIAVD 251
Query: 156 LEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDI 215
LEH+ YR++ G+ CLMQIS R +D+++DTL LR + L VF DP+ KV HGA DI
Sbjct: 252 LEHHDYRTYYGIVCLMQISNRDQDWIIDTLALRDDLT-VLNTVFTDPSIVKVFHGAFMDI 310
Query: 216 VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDE 275
+WLQRD G+Y+ ++FDT AS+ L ++SL YLL F +K+YQ ADWR+RPL
Sbjct: 311 IWLQRDLGLYIVSLFDTYCASKNLGFPKHSLAYLLETFAHFKTSKKYQLADWRIRPLSHP 370
Query: 276 MLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE----- 330
M+ YAR DTH+LL IYD ++ KL K L +V S V ++ +E
Sbjct: 371 MMAYARSDTHFLLNIYDQLRNKLIHENK--------LQQVLYDSRQVAKRRFEYTKYRPL 422
Query: 331 ---------LLSEN------SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 375
++S N S ++ Y + + VV L WRD++A+ +DES
Sbjct: 423 APNGKVSCPVMSSNPREPFASIMYQYNVPSF-----KKGVVEVLYNWRDLVAKQEDESVR 477
Query: 376 YVLPNRTLIEIA 387
Y++PN+ L+ +A
Sbjct: 478 YIMPNQLLVTLA 489
>gi|218199707|gb|EEC82134.1| hypothetical protein OsI_26176 [Oryza sativa Indica Group]
Length = 949
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 125/348 (35%), Positives = 182/348 (52%), Gaps = 57/348 (16%)
Query: 67 KPQEEYK-IVVNNANQPFQHVWLQ----------------KSEDSGRFIHPLDN--LSVL 107
KPQ ++ +V +N+ F+H+ Q S++S + +HP + S+L
Sbjct: 64 KPQARFRRVVADNSYSAFKHLRRQGAGPVGSGHHGSEAQPTSQESSQKVHPFEEEITSLL 123
Query: 108 ----DFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRS 163
DF + GD + P + T + VE L++LA L FAVD E + RS
Sbjct: 124 NNPPDFQNFMPGD----RCPEMS-TSYNWVETDAQLEDLARLLDDEKAFAVDTEQHSLRS 178
Query: 164 FLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFG 223
FLG T LMQIST+ D+++DT+ L V LR VF +P+ K+ HGAD D++WLQRDF
Sbjct: 179 FLGYTALMQISTQKADYLIDTIALH-DVMSILRPVFANPSICKIFHGADNDVLWLQRDFH 237
Query: 224 IYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARED 283
IY+ NMFDT +A VL + SL YLL +CGV +K Q DWR+RPL EM++YAR D
Sbjct: 238 IYVVNMFDTAKACEVLSKPQKSLAYLLELYCGVTTDKTMQREDWRLRPLTPEMIQYARCD 297
Query: 284 THYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGL 343
HYLLYI + + +L + K + SD+P ++ E S+
Sbjct: 298 AHYLLYIANCLASELHA--KTYDASDSPNDKI--------------NFFFEASH------ 335
Query: 344 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ +V +C WRD++AR DES YVL ++ + +A +P
Sbjct: 336 ------RSNMDLVWKICAWRDLMARMHDESLRYVLSDQAIASLAVSVP 377
>gi|428671950|gb|EKX72865.1| 3'-5' exonuclease domain containing protein [Babesia equi]
Length = 742
Score = 199 bits (506), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 111/295 (37%), Positives = 169/295 (57%), Gaps = 13/295 (4%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ LV++VK LK++ A LK AVD+EH+ +F G CL+Q S+ ED++VD K+
Sbjct: 321 YTLVDDVKGLKKMIATLKKEKIIAVDVEHHSEETFRGFVCLVQFSSSKEDWIVDPFKIFG 380
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE-RNSLEY 248
+ L EV DP KV HG+D DI+WLQRDFG+Y+ NMFDT A+ VLK+ + SL+Y
Sbjct: 381 SMN-LLNEVMTDPEILKVFHGSDNDIIWLQRDFGVYVVNMFDTKAAAEVLKVPGKRSLDY 439
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
LL + CGV +K YQ ADWR RPLP EML+YA DTHYL+ +Y I+K ++ E+
Sbjct: 440 LLMNLCGVRIDKSYQTADWRKRPLPPEMLKYACGDTHYLIKLYTILK----NLALGMEDG 495
Query: 309 DTPLTEVYKRSYDVCRQLYE----KELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
+ ++ K +C++ Y K + S + YG+ LN ++ L +R+
Sbjct: 496 REKIIQIMKNGKHICQRQYSEKNPKLIAMARSIGNKYGIPVDKLNRISYNLLFNLLVFRN 555
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
+ AR DES +L +R + I ++ + +R K+ + + +GP ++ I
Sbjct: 556 IAARTLDESESLLLSDRNIATIVRR--ANSGSFQRFAKAAYPCLVN-LGPEIAYI 607
>gi|222637126|gb|EEE67258.1| hypothetical protein OsJ_24424 [Oryza sativa Japonica Group]
Length = 949
Score = 199 bits (506), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 125/348 (35%), Positives = 182/348 (52%), Gaps = 57/348 (16%)
Query: 67 KPQEEYK-IVVNNANQPFQHVWLQ----------------KSEDSGRFIHPLDN--LSVL 107
KPQ ++ +V +N+ F+H+ Q S++S + +HP + S+L
Sbjct: 64 KPQARFRRVVADNSYSAFKHLRRQGAGPVGSGHHGSEAQPTSQESSQKVHPFEEEITSLL 123
Query: 108 ----DFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRS 163
DF + GD + P + T + VE L++LA L FAVD E + RS
Sbjct: 124 NNPPDFQNFMPGD----RCPEMS-TSYNWVETDAQLEDLARLLDDEKAFAVDTEQHSLRS 178
Query: 164 FLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFG 223
FLG T LMQIST+ D+++DT+ L V LR VF +P+ K+ HGAD D++WLQRDF
Sbjct: 179 FLGYTALMQISTQKADYLIDTIALH-DVMSILRPVFANPSICKIFHGADNDVLWLQRDFH 237
Query: 224 IYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARED 283
IY+ NMFDT +A VL + SL YLL +CGV +K Q DWR+RPL EM++YAR D
Sbjct: 238 IYVVNMFDTAKACEVLSKPQKSLAYLLELYCGVTTDKTMQREDWRLRPLTPEMIQYARCD 297
Query: 284 THYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGL 343
HYLLYI + + +L + K + SD+P ++ E S+
Sbjct: 298 AHYLLYIANCLASELHA--KTYDASDSPNDKI--------------NFFFEASH------ 335
Query: 344 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ +V +C WRD++AR DES YVL ++ + +A +P
Sbjct: 336 ------RSNMDLVWKICAWRDLMARMHDESLRYVLSDQAIASLAVSVP 377
>gi|401413034|ref|XP_003885964.1| Ribonuclease D, related [Neospora caninum Liverpool]
gi|325120384|emb|CBZ55938.1| Ribonuclease D, related [Neospora caninum Liverpool]
Length = 1387
Score = 198 bits (504), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 120/352 (34%), Positives = 186/352 (52%), Gaps = 31/352 (8%)
Query: 114 IGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDE--FAVDLEHNQYRSFLGLTCLM 171
+G+ + KP L+ TP + E ++L+ L +L + A+DLEH+ + S+ G TCL+
Sbjct: 444 VGEPQRWKP--LKDTPLVRISEKEELQHLVDELSTGAHPLVAIDLEHHSFHSYRGFTCLL 501
Query: 172 QISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 231
Q+STR +D+++D L + L + +P K+ HGAD DI+WLQRDF +Y+ NMFD
Sbjct: 502 QLSTREKDYLIDPFPLFEHLH-VLNAITANPKILKIFHGADSDIIWLQRDFSVYVVNMFD 560
Query: 232 TGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 290
T A+R L + SL LLH +CGV ANK+YQ ADWR RPL EM YAR DTHYL +I
Sbjct: 561 TCVAARALAVPGGASLANLLHTYCGVEANKQYQLADWRRRPLTPEMEAYARSDTHYLPFI 620
Query: 291 YDIMKIKLSSMPKESENSDTP----------LTEVYK--------RSYDVCRQLY-EKEL 331
+D+MK +L S P+ P +TE + RS DVC +L+ E
Sbjct: 621 FDVMKNQLLSKPELGGALSPPAVTGLEEGLEVTEAGQQAMQFTLDRSRDVCLKLHVEAPF 680
Query: 332 LSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ + AGL+ V L +WRD +AR D S + L+ +A++ P
Sbjct: 681 DAPAEAEALLKRNRAGLSPLSYVVFIELLKWRDTLARRLDRSPVSLATPAHLLLLAQKRP 740
Query: 392 TTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM------QNAANFEVIAQKLK 437
T+ + ++ + ++ ++ +I+ S+ Q AA+ ++ L+
Sbjct: 741 TSTIEFNAAMRPAPPTLRQHTQELIQLIQRSLLGSEAAQRAASGAFLSPALR 792
>gi|13278238|gb|AAH03952.1| Exosc10 protein, partial [Mus musculus]
Length = 517
Score = 198 bits (504), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 126/176 (71%), Gaps = 3/176 (1%)
Query: 216 VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDE 275
V LQ+DFG+Y+ NMFDT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+E
Sbjct: 3 VGLQKDFGLYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEE 62
Query: 276 MLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN 335
ML YAR+DTHYLLYIYD M+++L + + L V++RS D+C + + K + ++
Sbjct: 63 MLSYARDDTHYLLYIYDRMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDE 119
Query: 336 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
SYL +Y Q LN+QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 120 SYLELYRKQKKHLNSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 175
>gi|221485391|gb|EEE23672.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
gondii GT1]
Length = 1353
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/324 (34%), Positives = 174/324 (53%), Gaps = 23/324 (7%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDE--FAVDLEHNQYRSFLGLTCLMQISTRTEDFVV 182
L+ TP + E ++L+EL +L S A+DLEH+ + S+ G TCL+Q+STR +D+++
Sbjct: 456 LKDTPLVRIAEKEELQELVDELSSGAHSLVAIDLEHHSFHSYRGFTCLLQLSTREKDYII 515
Query: 183 DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE 242
D L + L + +P K+ HGAD DI+WLQRDF +Y+ NMFDT A+R L +
Sbjct: 516 DPFALFDHLH-VLNTITANPKILKIFHGADSDIIWLQRDFSVYVVNMFDTCVAARALAVP 574
Query: 243 RN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
SL LL +C V ANK+YQ ADWR RPL EM YAR DTHYL +I+D+MK +L S
Sbjct: 575 GGASLANLLQTYCHVEANKQYQLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQLLSK 634
Query: 302 P------------------KESENSDTPLTEVYKRSYDVCRQLY-EKELLSENSYLHIYG 342
P + +E + +RS DVC +L+ E + +
Sbjct: 635 PELGAALSPSAVTDFDGTLEVTEAGKQIMMFTMERSRDVCLKLHVEAPFDAPAEAEALLK 694
Query: 343 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLK 402
AGL+ V L +WRD +AR D S + L+ +A++ PT+A + ++
Sbjct: 695 RTRAGLSPLSYVVFIELLKWRDTLARRLDRSPVSLATPAHLLLLAQKRPTSAVEFAAAMR 754
Query: 403 SKHSYIERYMGPVLSIIKNSMQNA 426
+ ++M ++ +I+ S+ ++
Sbjct: 755 PAPPTLRQHMPELIQLIQRSLSDS 778
>gi|150951537|ref|XP_001387875.2| exosome component 3'-5' exonuclease [Scheffersomyces stipitis CBS
6054]
gi|149388676|gb|EAZ63852.2| ribosomal RNA processing 3'-5' exonuclease [Scheffersomyces
stipitis CBS 6054]
Length = 792
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 113/298 (37%), Positives = 162/298 (54%), Gaps = 25/298 (8%)
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRT 177
E + P T V+ V++L+++ +LK E AVDLEH+ YRS+ G+ CLMQIS R
Sbjct: 221 EPIAPQDWTSTTATWVDTVEELQKMVEELKKSSEIAVDLEHHDYRSYYGIVCLMQISNRD 280
Query: 178 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 237
+D+++DTL LR + L VF +P KV HGA DI+WLQRD G+Y+ ++FDT AS+
Sbjct: 281 QDWIIDTLALRDDLE-CLNTVFTNPHIVKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASK 339
Query: 238 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 297
L + SL YLL F +K+YQ ADWR+RPL M+ YAR DTH+LL I+D +K K
Sbjct: 340 SLGFPKFSLAYLLETFAHFKTSKKYQLADWRIRPLSPPMMAYARSDTHFLLSIFDQLKNK 399
Query: 298 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEK---ELLSENSYLHIYG------------ 342
L E L V S V ++ +E L+ N +
Sbjct: 400 LIDAGNEK------LQRVLFDSRQVAKRRFEYTPFRPLTNNINSRVSCPVMASNPREPFS 453
Query: 343 --LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK-QLPTTAAKL 397
+ + + + +VV L WRD IA+ +DES +V+PN+ L+ +A P AK+
Sbjct: 454 SIMVQYNVPSHKKSVVEALYNWRDRIAKIEDESVRFVMPNQLLVNLANLNQPVDVAKV 511
>gi|237835553|ref|XP_002367074.1| exosome component 10, putative [Toxoplasma gondii ME49]
gi|211964738|gb|EEA99933.1| exosome component 10, putative [Toxoplasma gondii ME49]
Length = 1353
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 113/324 (34%), Positives = 174/324 (53%), Gaps = 23/324 (7%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDE--FAVDLEHNQYRSFLGLTCLMQISTRTEDFVV 182
L+ TP + E ++L+EL +L S A+DLEH+ + S+ G TCL+Q+STR +D+++
Sbjct: 456 LKDTPLVRIAEKEELQELVDELSSGAHSLVAIDLEHHSFHSYRGFTCLLQLSTREKDYII 515
Query: 183 DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE 242
D L + L + +P K+ HGAD DI+WLQRDF +Y+ NMFDT A+R L +
Sbjct: 516 DPFALFDHLH-VLNTITANPKILKIFHGADSDIIWLQRDFSVYVVNMFDTCVAARALAVP 574
Query: 243 RN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
SL LL +C V ANK+YQ ADWR RPL EM YAR DTHYL +I+D+MK +L S
Sbjct: 575 GGASLANLLQTYCHVEANKQYQLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQLLSK 634
Query: 302 P------------------KESENSDTPLTEVYKRSYDVCRQLY-EKELLSENSYLHIYG 342
P + +E + +RS DVC +L+ E + +
Sbjct: 635 PELGAALSPSAVTDFDGTLEVTEAGKQIMMFTMERSRDVCLKLHVEAPFDAPAEAEALLK 694
Query: 343 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLK 402
AGL+ V L +WRD +AR D S + L+ +A++ PT+A + ++
Sbjct: 695 RTRAGLSPLSYVVFIELLKWRDTLARRLDRSPVSLATPAHLLLLAQKRPTSAVEFAAAMR 754
Query: 403 SKHSYIERYMGPVLSIIKNSMQNA 426
+ ++M ++ +I+ S+ ++
Sbjct: 755 PAPPTLRQHMPELIQLIQRSLSDS 778
>gi|221506253|gb|EEE31888.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
gondii VEG]
Length = 1353
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 113/324 (34%), Positives = 174/324 (53%), Gaps = 23/324 (7%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDE--FAVDLEHNQYRSFLGLTCLMQISTRTEDFVV 182
L+ TP + E ++L+EL +L S A+DLEH+ + S+ G TCL+Q+STR +D+++
Sbjct: 456 LKDTPLVRIAEKEELQELVDELSSGAHSLVAIDLEHHSFHSYRGFTCLLQLSTREKDYII 515
Query: 183 DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE 242
D L + L + +P K+ HGAD DI+WLQRDF +Y+ NMFDT A+R L +
Sbjct: 516 DPFALFDHLH-VLNTITANPKILKIFHGADSDIIWLQRDFSVYVVNMFDTCVAARALAVP 574
Query: 243 RN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
SL LL +C V ANK+YQ ADWR RPL EM YAR DTHYL +I+D+MK +L S
Sbjct: 575 GGASLANLLQTYCHVEANKQYQLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQLLSK 634
Query: 302 P------------------KESENSDTPLTEVYKRSYDVCRQLY-EKELLSENSYLHIYG 342
P + +E + +RS DVC +L+ E + +
Sbjct: 635 PELGAALSPSAVTDFDGTLEVTEAGKQIMMFTMERSRDVCLKLHVEAPFDAPAEAEALLK 694
Query: 343 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLK 402
AGL+ V L +WRD +AR D S + L+ +A++ PT+A + ++
Sbjct: 695 RTRAGLSPLSYVVFIELLKWRDTLARRLDRSPVSLATPAHLLLLAQKRPTSAVEFAAAMR 754
Query: 403 SKHSYIERYMGPVLSIIKNSMQNA 426
+ ++M ++ +I+ S+ ++
Sbjct: 755 PAPPTLRQHMPELIQLIQRSLSDS 778
>gi|149244804|ref|XP_001526945.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449339|gb|EDK43595.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 826
Score = 196 bits (498), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 163/284 (57%), Gaps = 23/284 (8%)
Query: 120 VKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTED 179
++P +T V+ + L + +LK+ E AVDLEH+ YRS+ GL CLMQIS R +D
Sbjct: 221 IQPQEWTKTEAIWVDNEEQLDAMIEELKAASEIAVDLEHHDYRSYYGLVCLMQISNREKD 280
Query: 180 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 239
+V+DTL LR ++ L +F + KV HGA DI+WLQRD G+Y+ ++FDT ASR L
Sbjct: 281 WVIDTLALRDELSK-LNVIFTNHEIVKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASRQL 339
Query: 240 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
+ SL+YLL F +K+YQ ADWR+RPLP ML YAR DTH+LLYIYD ++ KL
Sbjct: 340 GFAKFSLQYLLDTFAHFRTSKKYQLADWRIRPLPAPMLAYARSDTHFLLYIYDQLRNKLI 399
Query: 300 SMPKESENSDTPLTEVYKRSYDVCRQL----------YEKELLSEN------SYLHIYGL 343
K S+ L +V KR ++ + +++ N S ++ Y +
Sbjct: 400 DQDKLSK-VLFELRQVAKRRFEYTKYRPLSNTPGNGQVSCPIMASNPKEPWGSIMYQYNV 458
Query: 344 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 387
+ +V L ++RD +AR +DES Y++PN+ L+ ++
Sbjct: 459 PSFKKH-----IVEVLYKYRDAVAREEDESVRYIMPNQLLVSLS 497
>gi|67848464|gb|AAY82265.1| hypothetical protein At2g32420 [Arabidopsis thaliana]
Length = 327
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/211 (51%), Positives = 127/211 (60%), Gaps = 5/211 (2%)
Query: 124 SLEQT-PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVV 182
SLE + + VE LKELA L FAVD E + RSFLG T L+QIST EDF+V
Sbjct: 112 SLEMSDSYVWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLV 171
Query: 183 DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE 242
DT+ L V LR VF DP KV HGAD D++WLQRDF IY+ NMFDT +A VL
Sbjct: 172 DTIALH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKP 230
Query: 243 RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 302
+ SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI D + +L +
Sbjct: 231 QRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARXDAHYLLYIADSLTTELKQLA 290
Query: 303 KESENSDTP---LTEVYKRSYDVCRQLYEKE 330
+S + D L E +RS C QLY KE
Sbjct: 291 TDSSSPDDRFHFLLEASRRSNMTCLQLYTKE 321
>gi|294654453|ref|XP_456510.2| exosome component 3'-5' exonuclease [Debaryomyces hansenii CBS767]
gi|199428893|emb|CAG84465.2| DEHA2A04334p [Debaryomyces hansenii CBS767]
Length = 776
Score = 188 bits (478), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 113/353 (32%), Positives = 182/353 (51%), Gaps = 48/353 (13%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
V+ V L E+ + L E A+DLEH+ YRS+ G+ CLMQIS+R +D+++DTLKLR +
Sbjct: 234 VDSVDVLNEMISLLSEQSEIAIDLEHHDYRSYYGIVCLMQISSRDQDWIIDTLKLRDDLE 293
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L +VF +P KV HGA DI+WLQRD G+Y+ ++FDT AS+ L + SL YLL
Sbjct: 294 S-LNKVFTNPDIVKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASKKLGFPKFSLAYLLET 352
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPL 312
F +K+YQ ADWR+RPL ML YAR DTH+LL IYD ++ KL L
Sbjct: 353 FANFKTSKKYQLADWRIRPLSPPMLAYARSDTHFLLNIYDQLRNKLIDAGANR------L 406
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG------------------------L 348
EV S V ++ +E Y L +G +
Sbjct: 407 QEVLYESRQVAKRRFE--------YTKFRPLSTSGGKVSCPVMANNPKEPFSSILLQYNV 458
Query: 349 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL-PTTAAKLRRLLKSKHSY 407
+ ++ L WRD +A+ DDES Y++ N+ L+ ++ P K+ + Y
Sbjct: 459 PYHKKPLIEALYNWRDALAKRDDESVRYIMSNQLLVSLSSLSQPVDVQKVLGVSNYISDY 518
Query: 408 IERYMGPVLSIIKNSMQNAAN--------FEVIAQKLKEERMEVASEETEVLV 452
+ + + ++I+N++++ A+ + I++ ++M ++ ++ + ++
Sbjct: 519 VRQNAKDLANLIENTLKSMADSDWELVDKWNDISKAADNDKMNISDDDLDKII 571
>gi|313242411|emb|CBY34559.1| unnamed protein product [Oikopleura dioica]
Length = 420
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 121/172 (70%), Gaps = 1/172 (0%)
Query: 124 SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVD 183
+L+ TP +VE + +L+ E AVDLEH++YRS+ G TCL+QIS+R +D+++D
Sbjct: 250 ALDDTPLSVVESSLSFNLMMQELREESELAVDLEHHRYRSYQGFTCLVQISSRQKDYILD 309
Query: 184 TLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLER 243
L + + L EVF +P K+ HG+ D++WLQRDFG+Y+ N+FDT A++ L L +
Sbjct: 310 PLAVWEDMYK-LNEVFANPKIVKIFHGSRNDMLWLQRDFGVYVVNLFDTFFAAKKLDLAK 368
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
SL+YLL H+C + +K +Q ADWR+RP+P MLRYAR+DTHYLLY+YD ++
Sbjct: 369 KSLDYLLQHYCKIRLDKRFQLADWRMRPIPPNMLRYARQDTHYLLYVYDRLR 420
>gi|344234698|gb|EGV66566.1| hypothetical protein CANTEDRAFT_128954 [Candida tenuis ATCC 10573]
Length = 737
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 152/273 (55%), Gaps = 14/273 (5%)
Query: 126 EQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTL 185
E T +++ + + EL +L + E AVDLEH+ YR++ GL CLMQISTR +D+++DTL
Sbjct: 207 ESTNAIWIDQPEQIDELVNELSNSSEIAVDLEHHDYRTYYGLVCLMQISTRKKDWIIDTL 266
Query: 186 KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS 245
LR + L VF +P KV HGA DI+WLQRD G+Y+ ++FDT AS+ L + S
Sbjct: 267 ALRDDLQK-LNVVFTNPQIVKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASKKLGFPKFS 325
Query: 246 LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM---P 302
L YLL F +K+YQ ADWR+RPL ML YAR DTH+LL I+D +K KL
Sbjct: 326 LAYLLETFAKFKTSKKYQLADWRIRPLSTSMLAYARSDTHFLLNIFDHLKNKLIDQGNGK 385
Query: 303 KESENSDTPLTEVYKRSYDVCRQLYEKEL-----LSEN---SYLHIYGLQGAGLNAQQLA 354
+S D+ L + Y R L L +S N +L I + +
Sbjct: 386 MQSVLHDSRLVAKRRFEYTKFRPLKGTSLVTCPVMSSNPLEPFLPIVVQYNIPYHIK--P 443
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 387
VV L WRD +AR DES Y++ N+ L +A
Sbjct: 444 VVEVLYNWRDNLARQFDESVRYIMSNQALALLA 476
>gi|430811289|emb|CCJ31212.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 767
Score = 186 bits (472), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 168/308 (54%), Gaps = 50/308 (16%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
V ++ L+E+ LK+ E AVDLEH+ YRS+ G CLMQISTR D+++DTL+LR ++
Sbjct: 213 VNTIQLLEEMVKNLKNATEIAVDLEHHDYRSYQGFVCLMQISTRNIDWIIDTLELREELE 272
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L EVF DP KV+HGA DI+WLQRDFG+Y+ +FDT A+R+L E + +
Sbjct: 273 I-LNEVFTDPNIMKVLHGASMDIIWLQRDFGLYIVGLFDTYHATRILGFEGHVI------ 325
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPL 312
RPLP+EM YAR DTH+LLYIYD +K + + +S S L
Sbjct: 326 ----------------FRPLPEEMFSYARSDTHFLLYIYDQLK---NELLIKSTLSHNLL 366
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ---------------QLAVVA 357
V S +V +++EK+ Y + G G++ Q++V+
Sbjct: 367 LSVLSASNNVALRVFEKDK---------YDVDGLGVDGWKNILQKWSNCLTSDLQVSVLI 417
Query: 358 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLS 417
L +WRD +AR +DES YVLPN L++IA P A+ + + + ++ ++
Sbjct: 418 SLHQWRDKVARQEDESVRYVLPNHILVQIAVNCPEDASSVLSICSHIPPLVRVHVDEIVQ 477
Query: 418 IIKNSMQN 425
II+++ Q+
Sbjct: 478 IIRSTKQD 485
>gi|62088052|dbj|BAD92473.1| exosome component 10 isoform 2 variant [Homo sapiens]
Length = 431
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/146 (58%), Positives = 110/146 (75%), Gaps = 1/146 (0%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 282 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 341
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 342 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 400
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVR 270
SL++LL +C V++NK+YQ ADWR+R
Sbjct: 401 SLDHLLKLYCNVDSNKQYQLADWRIR 426
>gi|3831454|gb|AAC69936.1| hypothetical protein [Arabidopsis thaliana]
Length = 237
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/179 (53%), Positives = 112/179 (62%), Gaps = 2/179 (1%)
Query: 124 SLEQT-PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVV 182
SLE + + VE LKELA L FAVD E + RSFLG T L+QIST EDF+V
Sbjct: 48 SLEMSDSYVWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLV 107
Query: 183 DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE 242
DT+ L V LR VF DP KV HGAD D++WLQRDF IY+ NMFDT +A VL
Sbjct: 108 DTIALH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKP 166
Query: 243 RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
+ SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI D + +L +
Sbjct: 167 QRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQL 225
>gi|238484333|ref|XP_002373405.1| exosome complex exonuclease Rrp6, putative [Aspergillus flavus
NRRL3357]
gi|220701455|gb|EED57793.1| exosome complex exonuclease Rrp6, putative [Aspergillus flavus
NRRL3357]
Length = 434
Score = 179 bits (454), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 115/173 (66%)
Query: 126 EQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTL 185
E T V+ ++ +KE+ +LKS E A+DLEH+ S+ GL LMQISTR +D+VVDTL
Sbjct: 216 ESTTATFVDTLEGVKEMLEELKSAKEIAIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTL 275
Query: 186 KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS 245
K + L EVF DP+ KV HG+ DI+WLQRD G+Y+ MFDT A+ L + S
Sbjct: 276 KPWREELQMLNEVFADPSILKVFHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKRS 335
Query: 246 LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298
L++LL F A+K YQ ADWR+RP+P+ M YAR DTHYLL+I+D ++ +L
Sbjct: 336 LKFLLQKFVNFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHIFDHLRNEL 388
>gi|147856691|emb|CAN79186.1| hypothetical protein VITISV_035853 [Vitis vinifera]
Length = 951
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 131/362 (36%), Positives = 186/362 (51%), Gaps = 54/362 (14%)
Query: 61 HVPTITKPQEEYKIVV-NNANQPFQHVWLQKS-EDSGRFIHPLD-NLSVLDFVDKDIGDV 117
++ T KPQ +K V+ +N+ F+H+ L +S ++ HP + +S L + +I
Sbjct: 41 YLHTEPKPQYSFKXVLADNSYSAFKHLKLGESXSETSLHSHPYEAEISAL-LENAEIEFS 99
Query: 118 EAVKPPSLEQT-PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTR 176
+ L+ + + VE LKELA L FAVD E + RSFLG T L+QIST+
Sbjct: 100 FGTESMDLKISDSYVWVETELQLKELADVLSKQRVFAVDTEQHSLRSFLGFTALIQISTQ 159
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
ED++VDT+ L + L+ VF +P+ KV HGAD D++WLQRDF I + N+FDT
Sbjct: 160 NEDYLVDTIALHDTLD-VLQPVFANPSICKVFHGADNDVLWLQRDFHIXVVNLFDT---- 214
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296
A +E DWR RPL EML YA+ D HYLLYI + +
Sbjct: 215 ---------------------AKRE----DWRQRPLSVEMLEYAQTDAHYLLYIANCLIA 249
Query: 297 KLSSMPKESENSDTP------LTEVYKRSYDVCRQLYEKEL--------LSENSYLHIYG 342
+L +SENS P + E +RS VC QLY KE+ S H+ G
Sbjct: 250 ELRQ--HDSENSCCPDDKLRFVLEASRRSNTVCLQLYIKEIEISPGESAASSIISRHLNG 307
Query: 343 LQGAGLNAQQLA---VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 399
G A L +V LC WRD++AR DES YVL ++ +I +A ++PTT ++
Sbjct: 308 QGGISSKACDLQFQDLVRRLCTWRDLMARVHDESLRYVLSDQAIIALADKVPTTQKEICT 367
Query: 400 LL 401
L+
Sbjct: 368 LI 369
>gi|303286107|ref|XP_003062343.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455860|gb|EEH53162.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 149
Score = 175 bits (443), Expect = 1e-40, Method: Composition-based stats.
Identities = 84/142 (59%), Positives = 101/142 (71%), Gaps = 8/142 (5%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L +LA+ L V EFAVDLEH+ YRSF G TC++Q+STR DFVVD L LR ++ +L
Sbjct: 8 LADLASHLDGVAEFAVDLEHHSYRSFRGFTCVIQVSTRERDFVVDALALRSKMRAHLARH 67
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL--------EYLL 250
F+D TK+KVMHGAD D+ WLQRDFGIY+ NMFDTGQA+RVL+L L Y L
Sbjct: 68 FEDATKQKVMHGADMDVQWLQRDFGIYVVNMFDTGQAARVLELPSKGLGAFYLTDAAYAL 127
Query: 251 HHFCGVNANKEYQNADWRVRPL 272
HFC V+A+K YQ ADWR RPL
Sbjct: 128 KHFCDVDADKRYQLADWRRRPL 149
>gi|384247627|gb|EIE21113.1| 3'-5' exonuclease, partial [Coccomyxa subellipsoidea C-169]
Length = 165
Score = 174 bits (442), Expect = 1e-40, Method: Composition-based stats.
Identities = 80/166 (48%), Positives = 116/166 (69%), Gaps = 1/166 (0%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
V+ + L+ + +LK + AVDLEH+ RS+LG+TCL+Q+ST ++++VD L L +
Sbjct: 1 VDSAEKLQRVTEELKGAQQIAVDLEHHALRSYLGITCLLQLSTGDKEYLVDALALHDHMH 60
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L++V +D KV+HG + DI WLQRDF +YL N+FDT +A +VL E SL +LL
Sbjct: 61 -LLQDVLEDARVVKVLHGGENDISWLQRDFHLYLVNVFDTEKACQVLGYEERSLAHLLQR 119
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298
+CGV ANK+YQ ADWRVRPL E++ YAR D H+L+YI D+++ +L
Sbjct: 120 YCGVTANKQYQRADWRVRPLAKELVDYARTDVHFLVYIADVLRSEL 165
>gi|224064982|ref|XP_002301621.1| predicted protein [Populus trichocarpa]
gi|222843347|gb|EEE80894.1| predicted protein [Populus trichocarpa]
Length = 228
Score = 174 bits (441), Expect = 2e-40, Method: Composition-based stats.
Identities = 87/158 (55%), Positives = 103/158 (65%), Gaps = 1/158 (0%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
+E LK+LA L FAVD E + RSFLG T L+QISTR ED++VDT+ L +G
Sbjct: 55 IETETQLKDLAHTLSKHKVFAVDTEQHSLRSFLGFTALIQISTRNEDYLVDTIALHDVMG 114
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L VF DPT KV HGAD D++WLQRDF IY+ N+FDT +A VL + SL YLL
Sbjct: 115 -VLAPVFADPTICKVFHGADNDVLWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLET 173
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 290
+CGV NK Q DWR RPL EML YA+ D HYLLYI
Sbjct: 174 YCGVATNKLLQREDWRQRPLSAEMLEYAQTDAHYLLYI 211
>gi|449016126|dbj|BAM79528.1| similar to polymyositis-scleroderma overlap syndrome associated
autoantigen [Cyanidioschyzon merolae strain 10D]
Length = 492
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 151/275 (54%), Gaps = 26/275 (9%)
Query: 153 AVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV----GPYLREVFKDPTKKKVM 208
A+DLE + YRS+ G CL+QIS+ D V+D L LR + G ++R + + P KVM
Sbjct: 135 AIDLEAHSYRSYQGFVCLVQISSVDCDAVIDALALRSALADPSGAFIR-LLRHPRVVKVM 193
Query: 209 HGADRDIVWLQRDF--GIYLCNMFDTGQASRVLKLERNSLEYLLHHFCG----------- 255
HGAD D++WLQRDF + N+FDT +A+++L SL +L+ +
Sbjct: 194 HGADSDVLWLQRDFTPAARIVNLFDTARAAQLLGEPSVSLAHLISCYARDEDRTADPASL 253
Query: 256 --------VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
+ + +Q ADWR+RPLP ML YAR+DTHYLLY+Y ++ +L +
Sbjct: 254 RNGSRDALASEKRVFQVADWRIRPLPSSMLHYARQDTHYLLYLYRVLSTRLVQETDPNSP 313
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
L +++ +S DV + Y + ++ +++L + A L+ L ++ L WRD IA
Sbjct: 314 ETNRLQQLWLKSADVALRRYALQEVAADAHLKVARQYKAMLSDTMLPLLRDLIHWRDQIA 373
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLK 402
R DES YV PN LI + ++ P + +L +LL+
Sbjct: 374 READESPPYVFPNHFLIALVRETPRSPFQLDKLLR 408
>gi|258566335|ref|XP_002583912.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907613|gb|EEP82014.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 635
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/183 (45%), Positives = 111/183 (60%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
E T V ++ ++ + +LK E +DLEH+ S+ GL CLMQISTR +D++VDT
Sbjct: 222 FESTSATFVNTMEGVQAMLKELKCAKEIGIDLEHHDTHSYYGLVCLMQISTRDKDWIVDT 281
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L + L EVF +P KV+HG+ D++WLQRD G+YL +FDT A+ L +
Sbjct: 282 LLPWREELQILNEVFANPQIVKVLHGSSMDVIWLQRDLGLYLVGLFDTYHAAAALHYPKK 341
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL F A K+YQ ADWRVRPL M YAR DTHYLLYIYD ++ +L
Sbjct: 342 SLKFLLDKFVNFQAEKKYQIADWRVRPLLPGMFDYARSDTHYLLYIYDHLRNELIERSTP 401
Query: 305 SEN 307
EN
Sbjct: 402 GEN 404
>gi|293332135|ref|NP_001169203.1| uncharacterized protein LOC100383056 [Zea mays]
gi|223975495|gb|ACN31935.1| unknown [Zea mays]
Length = 475
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 169/538 (31%), Positives = 258/538 (47%), Gaps = 109/538 (20%)
Query: 312 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 371
L EV KRS ++C QLYEKE L++ SYLHI+GL+ LNA QL+V++ L WRD IARA+D
Sbjct: 16 LLEVCKRSNEICLQLYEKEQLTDTSYLHIHGLKENELNATQLSVLSSLYRWRDGIARAED 75
Query: 372 ESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEV 431
ESTGY+LPN+TL+EIAK++P T+ KL+R++KS++S +ER + V++ I++++ + FE
Sbjct: 76 ESTGYILPNKTLLEIAKEMPVTSGKLKRMIKSRNSILERNLNHVINNIRDAIAASGAFES 135
Query: 432 IAQKLKEERMEV--------ASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHP 483
I ++LK+ ++E +SE+TE++ N++ P+ V V VG
Sbjct: 136 IVEQLKKGKLEELTLADVKNSSEDTEMIPAVDVDNIEDPSDESAVVPAVITNVGAA---- 191
Query: 484 PAYT--------QLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSSSG 535
P T L+ PK S A GL ++NK+ LS+
Sbjct: 192 PCITSEASLGNMHLEDPVPKTKDSGASSGFTGL-----------TDNKK------LSNDQ 234
Query: 536 QSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPK--RK---FDGEKKDKEAMKLEQ 590
Q + +A VQ K+P FGAL G R+ F G + K+++
Sbjct: 235 Q------------QAAKATVQVSKRPT-AFGALFGKAAAGRRPDLFLGFSNVQGKTKVDK 281
Query: 591 IKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVS 650
I SSV LPFH F+ +L + LP S S + I+ S+
Sbjct: 282 ITSSVVLPFHH-FSGGAKL----------SSAALPAKESLHSEPDS---IQHSD------ 321
Query: 651 QSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSALEMGKQDETMSL 710
PA + E++I L+ DE++ P E+G+ +D MS
Sbjct: 322 ------PACQ--LEEVIQLDMGTDEQQ-----------PPENGNEDDG-HCETEDTEMSK 361
Query: 711 S---DLSTSFQECFHSANNNRKPGKPERSEEPSGF-LQLKPFDFEAARKQIEFGEDAKEK 766
S D S + Q F S N R + +++ F + + PFD+ ARK + E+
Sbjct: 362 SPSGDPSVTEQR-FRSLNEERNVKQNQKTPREFEFSVPVVPFDYAEARKNLVSSLPKAER 420
Query: 767 SAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKE----LSQGRRRSAFPATGNRSATF 820
+ ++GDK++ S +K G E RRR AFP +GNR+AT+
Sbjct: 421 RKDDAVARAINTDAGDKQRGS-----KKPPGGGENEGNFQHPRRRQAFPPSGNRNATY 473
>gi|209881893|ref|XP_002142384.1| exosome component 10 [Cryptosporidium muris RN66]
gi|209557990|gb|EEA08035.1| exosome component 10, putative [Cryptosporidium muris RN66]
Length = 1029
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 104/148 (70%), Gaps = 2/148 (1%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
A+DLEH+ ++F G CL+Q+STRT D+++D L ++ L E+ +P K+ HG+
Sbjct: 401 LAIDLEHHSMQTFRGFVCLIQMSTRTCDYIIDPFPLFEELSR-LNELTTNPRILKLFHGS 459
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVR 270
D DI+WLQRDF +Y+ NMFDTGQA+RVL SL LL+ +C V ANK+YQ +DWR R
Sbjct: 460 DYDIIWLQRDFSVYVVNMFDTGQAARVLNTPGGYSLGNLLNLYCSVEANKQYQLSDWRER 519
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKL 298
PLP ++ YAR DTHYL YIYDIMK +L
Sbjct: 520 PLPQHLIEYARSDTHYLPYIYDIMKNQL 547
>gi|302803751|ref|XP_002983628.1| hypothetical protein SELMODRAFT_48160 [Selaginella moellendorffii]
gi|300148465|gb|EFJ15124.1| hypothetical protein SELMODRAFT_48160 [Selaginella moellendorffii]
Length = 201
Score = 166 bits (419), Expect = 7e-38, Method: Composition-based stats.
Identities = 82/173 (47%), Positives = 112/173 (64%), Gaps = 1/173 (0%)
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRT 177
E +P + + PF +E + L++LA L EFAVD E + RSFLG T L+QIST
Sbjct: 20 ETEQPLAEMEEPFVWIETKEALEDLAEVLSEESEFAVDTEQHSIRSFLGFTALIQISTYK 79
Query: 178 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 237
D+++D + L ++ LR VF + KV HGAD DI+WLQRDF IY+ N+FDT +A
Sbjct: 80 RDYLIDAIALHDEM-EILRPVFANAAICKVFHGADSDILWLQRDFHIYVVNLFDTARACD 138
Query: 238 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 290
VL + SL YLL +C ++ NK +Q +DWR RPLP+++L YAR D H+LLYI
Sbjct: 139 VLGKPQRSLAYLLQTYCNISTNKAFQKSDWRQRPLPEDILLYARTDAHFLLYI 191
>gi|242039749|ref|XP_002467269.1| hypothetical protein SORBIDRAFT_01g022350 [Sorghum bicolor]
gi|241921123|gb|EER94267.1| hypothetical protein SORBIDRAFT_01g022350 [Sorghum bicolor]
Length = 284
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 124/194 (63%), Gaps = 25/194 (12%)
Query: 271 PLPDEMLRYAREDTHYLLYIY--DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE 328
P ++ YAREDTHYLLYIY D+M+ +L +ES + L EV+KRS ++C Q YE
Sbjct: 2 PFLVDIKMYAREDTHYLLYIYSYDLMRQRLQ---RESTFENDLLLEVHKRSNEICLQFYE 58
Query: 329 KELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI-- 386
KELL++ SYLHIYGLQ L+A+QLAVVA L EWRD IAR +DESTGY+LPN+ + +
Sbjct: 59 KELLTDTSYLHIYGLQEHELDAKQLAVVAALHEWRDSIARQEDESTGYILPNKAFLLLWC 118
Query: 387 ------------------AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 428
AKQ+PT L+R++KSK Y+E + + + N+++ +
Sbjct: 119 KIRYATSLTPPPLFFNSKAKQMPTDVGHLKRIVKSKCPYVESNLELIAYTVWNALKYSYA 178
Query: 429 FEVIAQKLKEERME 442
FE IA++LK+ER+E
Sbjct: 179 FEGIAEQLKKERLE 192
>gi|156083893|ref|XP_001609430.1| exosome component 10 [Babesia bovis T2Bo]
gi|154796681|gb|EDO05862.1| exosome component 10, putative [Babesia bovis]
Length = 879
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 167/311 (53%), Gaps = 25/311 (8%)
Query: 131 KLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQ 190
KLV+ +++L+ + LK A+D+EH+ +S+ G CL+QI+ +D+V+D + +
Sbjct: 317 KLVQTLEELESMITLLKKCSIVAIDVEHHSTQSYRGFVCLVQITGADDDWVIDPFSIFDE 376
Query: 191 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE-RNSLEYL 249
+ L +V DP KVMHGA+ DI+WLQRDFG+Y+ N+FDT +A+ VL L +SL L
Sbjct: 377 MW-RLNDVTTDPRILKVMHGAESDILWLQRDFGVYVVNLFDTLKAADVLCLSCGHSLSSL 435
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK-------IKLSSMP 302
+ HF G++ +K YQ ADWR+RP+P +ML YA DTHYLL +Y +K +K ++P
Sbjct: 436 VRHFLGIHLDKSYQLADWRIRPIPRDMLTYATADTHYLLDLYSALKNTALEQDLKY-NIP 494
Query: 303 KESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ--------QLA 354
D + + S VC + Y + +E Q N Q L
Sbjct: 495 GMVGCFDNHIWRIMLASKKVCLRQYRDPVFNEIP----RAFQALRKNRQCPSKVDSLSLN 550
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNR--TLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 412
++ L +R+ AR DES ++ P+ ++ +A TA R + + +++ +
Sbjct: 551 MMLNLISFRNYAARVLDESDSFLFPDYAAVIVAMAADSKNTAENFYRAMVRRLPLLDQEI 610
Query: 413 GPVLSIIKNSM 423
P L ++N++
Sbjct: 611 -PYLLKLRNTL 620
>gi|66357594|ref|XP_625975.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD
domain and an HRDc domain [Cryptosporidium parvum Iowa
II]
gi|46227246|gb|EAK88196.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD
domain and an HRDc domain [Cryptosporidium parvum Iowa
II]
Length = 957
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 117/188 (62%), Gaps = 18/188 (9%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDE----------------FAVDLEHNQYRSFLGLT 168
L TP ++E DL+ + + ++ E A+D+EH+ +S+ G
Sbjct: 261 LSNTPLTFIKEPGDLRRMIDDILNLMESHYSQSSMNEESSPFLLAIDVEHHSNQSYKGFV 320
Query: 169 CLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 228
L+Q+STRT D+++D L ++ L E+ +P KV+HG+D DI+WLQRDF +Y+ N
Sbjct: 321 SLIQLSTRTHDYIIDPFNLFNEIQ-MLNELTANPKILKVLHGSDYDIIWLQRDFSVYIVN 379
Query: 229 MFDTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL 287
MFDTGQA+R+L SL+ LL +C ++ +K +Q ADWR RPL +E++ YAR DTHYL
Sbjct: 380 MFDTGQAARILNTPGGYSLKNLLSIYCSLDIDKRFQLADWRERPLSNELIEYARGDTHYL 439
Query: 288 LYIYDIMK 295
LYIYDIMK
Sbjct: 440 LYIYDIMK 447
>gi|67593930|ref|XP_665760.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656583|gb|EAL35530.1| hypothetical protein Chro.50386, partial [Cryptosporidium hominis]
Length = 875
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 117/188 (62%), Gaps = 18/188 (9%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDE----------------FAVDLEHNQYRSFLGLT 168
L TP ++E DL+ + + ++ E A+D+EH+ +S+ G
Sbjct: 261 LSNTPLTFIKEPGDLRRMIDDILNLMESHYSQSSMNEESSPFLLAIDVEHHSNQSYKGFV 320
Query: 169 CLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 228
L+Q+STRT D+++D L ++ L E+ +P KV+HG+D DI+WLQRDF +Y+ N
Sbjct: 321 SLIQLSTRTHDYIIDPFNLFNEIQ-MLNELTANPKILKVLHGSDYDIIWLQRDFSVYIVN 379
Query: 229 MFDTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL 287
MFDTGQA+R+L SL+ LL +C ++ +K +Q ADWR RPL +E++ YAR DTHYL
Sbjct: 380 MFDTGQAARILNTPGGYSLKNLLSIYCSLDIDKRFQLADWRERPLSNELIEYARGDTHYL 439
Query: 288 LYIYDIMK 295
LYIYDIMK
Sbjct: 440 LYIYDIMK 447
>gi|294943277|ref|XP_002783816.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983]
gi|239896568|gb|EER15612.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983]
Length = 350
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 102/262 (38%), Positives = 143/262 (54%), Gaps = 19/262 (7%)
Query: 163 SFLGLTCLMQISTRTEDFVVDTLKLRVQVGPY-LREVFKDPTKKKVMHGADRDIVWLQRD 221
S+ G TCL+QI+TR +D++VD L + + + + DP KV+HGAD D+ WLQRD
Sbjct: 3 SYRGFTCLIQIATRKKDYIVDVLAPGIMMKMHDFNRITSDPGIVKVLHGADMDVQWLQRD 62
Query: 222 FGIYLCNMFDTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
YLCNMFDTGQA+RVL+L SL+ LL +CG A+K Q ADWR RPL + M +YA
Sbjct: 63 LSAYLCNMFDTGQAARVLELGGGYSLKNLLDFYCGYKADKANQLADWRQRPLSERMKQYA 122
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLT----EVYK----RSYDVCRQLYEKELL 332
R+D HYLLYIYD M+ +L + D +T ++YK RS DV + Y+
Sbjct: 123 RDDVHYLLYIYDRMRAQL--LCSGGGVDDGKVTAYGRKMYKSTINRSCDVALKTYKD--- 177
Query: 333 SENSYL-HIYGLQGAGLNAQQLA---VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 388
+++ ++ H L L ++A L WRD + R D +L +R + IA
Sbjct: 178 ADSDFMEHAITLSCKTNTPLSLVGRPMLAALMHWRDKLGRQRDVFPNSILTDRLALRIAM 237
Query: 389 QLPTTAAKLRRLLKSKHSYIER 410
P T +L R L + R
Sbjct: 238 DEPVTREQLLRALGGGSGGVAR 259
>gi|414864886|tpg|DAA43443.1| TPA: hypothetical protein ZEAMMB73_373944 [Zea mays]
Length = 352
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/303 (37%), Positives = 164/303 (54%), Gaps = 41/303 (13%)
Query: 301 MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 360
+ +ES + L EV+KRS ++C Q YEKELL++ SYLHIYGLQ L+A+QLAVVA L
Sbjct: 5 LQRESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYGLQEHELDARQLAVVAALH 64
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK 420
EWRD IAR +DESTGY+LPN+ LIEIAKQ+PT L+R++KSK+ Y+E + + +
Sbjct: 65 EWRDRIARQEDESTGYILPNKALIEIAKQMPTDVGHLKRIVKSKYPYVESNLELIAYTVW 124
Query: 421 NSMQNAANFEVIAQKLKEERME---VASEET--EVLVLDTSSNLKIPNVGRESVDGVDAL 475
N+++ + FE IA++LK+ER+E + S +T EV LD ++ R + D D
Sbjct: 125 NALEYSYAFEGIAEQLKKERLEQVALKSGQTSDEVTPLDA-------DIDRSNFDSSDQ- 176
Query: 476 VGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSSS- 534
+VA R G S A +I E+K T S +S
Sbjct: 177 -------------------SANVNVASGSRAGFMSEAALISSIHLEDKTQTMSSVKTSQT 217
Query: 535 --GQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRKFDGEKKDKEAMKLEQIK 592
GQ R +N S + + A+Q L + AL GN GE ++ + +E +
Sbjct: 218 LLGQIRPVNK-DVLSNNIHQQAIQDL---SLTLKALKGNLAS--GGESNEQAGINVENFR 271
Query: 593 SSV 595
SSV
Sbjct: 272 SSV 274
>gi|219126108|ref|XP_002183306.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405062|gb|EEC45006.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 311
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 115/197 (58%), Gaps = 26/197 (13%)
Query: 129 PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTR------------ 176
P ++ V + + L +L V E A+DLE + YRSF G+ CL+Q+S R
Sbjct: 114 PATWIDTVDEWRRLGERLAHVTEIALDLEAHSYRSFAGMVCLLQLSFRDHHYHDKDDHDT 173
Query: 177 -------------TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFG 223
+F++DT+ L+ + L V +P KV+HGAD DI WLQRDFG
Sbjct: 174 PNDNDDTNDNSPTVHNFLIDTIVLKPYLNEVLLPVLTNPDVVKVLHGADSDIAWLQRDFG 233
Query: 224 IYLCNMFDTGQASRVLKLERNSLEYLLHHFC-GVNANKEYQNADWRVRPLPDEMLRYARE 282
+Y+ N+FDT +A+R LK R S Y+L H+ G++A+K Q ADWRVRPLP+ + +YA +
Sbjct: 234 LYIVNLFDTMRAARALKFPRASYAYVLQHYVDGLHADKSAQLADWRVRPLPEALQQYAIQ 293
Query: 283 DTHYLLYIYDIMKIKLS 299
DT YLL IYD M+ LS
Sbjct: 294 DTAYLLDIYDRMRYDLS 310
>gi|294865716|ref|XP_002764472.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983]
gi|239863939|gb|EEQ97189.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983]
Length = 703
Score = 159 bits (403), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 117/186 (62%), Gaps = 6/186 (3%)
Query: 108 DFVDKDIGDVEAVKPPSL--EQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFL 165
+ D ++ V P L ++ V+ V+ + E+ +L E A+DLEH+ +S+
Sbjct: 519 EMADAEVDGVVEAPSPQLPNKEAELMWVDTVELVDEMLDELAEAREVAIDLEHHNMQSYR 578
Query: 166 GLTCLMQISTRTEDFVVDTLK--LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFG 223
G TCL+QI+TR +D++VD L + +++ + R + DP KV+HGAD D+ WLQRD
Sbjct: 579 GFTCLIQIATRKKDYIVDVLAPGIMMKMHDFNR-ITSDPGIVKVLHGADMDVQWLQRDLS 637
Query: 224 IYLCNMFDTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARE 282
YLCNMFDTGQA+RVL+L SL+ LL +CG A+K Q ADWR RPL + M +YAR+
Sbjct: 638 AYLCNMFDTGQAARVLELGGGYSLKNLLDFYCGYKADKANQLADWRQRPLSERMKQYARD 697
Query: 283 DTHYLL 288
D HYLL
Sbjct: 698 DVHYLL 703
>gi|385304629|gb|EIF48639.1| putative nuclear exosome component rrp6p [Dekkera bruxellensis
AWRI1499]
Length = 607
Score = 159 bits (401), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 174/354 (49%), Gaps = 63/354 (17%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRT-EDFVVDTLKLRVQV 191
V+ V+ LK L ++L+ VDLEH+ YR++ GLT LMQIST T +D++VD L Q+
Sbjct: 198 VDNVEQLKALLSELEKCKVIGVDLEHHDYRTYHGLTSLMQISTDTGKDYIVDPLS--AQL 255
Query: 192 GPYL---REVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
P+L VF +P KV HGA D++WLQRD G+Y+ ++FDT A++ L L + SL +
Sbjct: 256 RPHLSLLNIVFTNPDIIKVFHGAFMDMMWLQRDLGLYVVSLFDTYWAAKELTLGKYSLAF 315
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE---- 304
LL + +K++Q ADWR+RPL EM YA+ DTH+L+ ++ ++ +L P
Sbjct: 316 LLEKYIHFRTSKKWQLADWRIRPLGPEMRNYAKADTHFLIELFGKIQXELIXKPGAMKRV 375
Query: 305 ----------------------------SENSDTPLTEVYKR---SYDVCRQLYEKELLS 333
S PLT ++ S+D R+L L+
Sbjct: 376 LYHSRKVSNRRFEYATYKPRNATAFGVVSTGGSVPLTPEFQDALFSFDTSRELPWLSLMR 435
Query: 334 ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP-- 391
N G+ + VV L +WRD AR +DES Y++ + L +A
Sbjct: 436 SN-----------GIPDTKGPVVEALYKWRDNKARKEDESIRYIMSDFVLTSLANSFSPG 484
Query: 392 -----TTAAKLRRLLKSKH----SYIERYMGPVLSIIKNSMQNAANFEVIAQKL 436
T AA L + +S Y+ + + + +I++ M+ + ++ A +L
Sbjct: 485 AIDQITEAAVLNVINRSARFGSSYYVRKCIKDLTVLIRDVMKQLSRIDLKAWQL 538
>gi|403223072|dbj|BAM41203.1| uncharacterized protein TOT_030000466 [Theileria orientalis strain
Shintoku]
Length = 820
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 155/278 (55%), Gaps = 9/278 (3%)
Query: 117 VEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTR 176
+E +P L ++ +K+V +DLK + K+++ ++D+EH ++ G+ CL+Q+ST
Sbjct: 408 LEKSEPLELGESKYKMVLTEEDLKAMIEKIQNNTILSIDVEHWSKNTYRGIVCLIQLSTP 467
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
E+++VD + ++ L V DP KVMHG+D DI WLQRDFG+Y+ NMFDT QA+
Sbjct: 468 EENYIVDPFDIFTKLN-ILNVVTTDPRILKVMHGSDNDIEWLQRDFGVYIVNMFDTRQAA 526
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296
+VL L+ SL L+ + V NK+YQ ADW RPL +EML YA D++YL+ +Y MK
Sbjct: 527 KVLNLKEESLMKLIDKYFNVKMNKKYQLADWSKRPLDEEMLNYACSDSNYLIPLYIKMKN 586
Query: 297 KLSSMPKESENSDTPLTEVYKRSYDVC-RQLYEKELLSENSYLHIY---GLQGAGLNAQQ 352
++ S + + + V S ++C Q + + ++ I ++ ++ Q
Sbjct: 587 EILS----TSDGKVKMIRVMNYSKNICLTQYVDNGVEMYRKFIRITKKNKIERKSMSFVQ 642
Query: 353 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+ L E+R+ AR D S V+ + L + K+L
Sbjct: 643 YNFMLNLLEFRNYAARKLDVSEQMVIRDYQLGLLVKKL 680
>gi|224003495|ref|XP_002291419.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973195|gb|EED91526.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 181
Score = 157 bits (397), Expect = 3e-35, Method: Composition-based stats.
Identities = 76/170 (44%), Positives = 108/170 (63%), Gaps = 9/170 (5%)
Query: 138 DLKELAAKLK------SVDEFAVDLEHNQYRSFLGLTCLMQISTRTE---DFVVDTLKLR 188
++ ELA ++ + E A+DLE + +R+F G CL+Q+S DF++D L LR
Sbjct: 11 EMTELATRINDGEQSGEIREIALDLEAHSHRTFAGFVCLIQLSIHISSGYDFLIDALSLR 70
Query: 189 VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
+ L + +P KVMHGAD DI WLQRDFG Y+ N+FDTG+ASR LK + L +
Sbjct: 71 HVIPTCLGPILANPNILKVMHGADSDIPWLQRDFGCYVVNLFDTGRASRALKFQSAGLAF 130
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298
LL + G++ +K +Q +DWR RPLPD+M YA DT YLL IYD ++++L
Sbjct: 131 LLRKYAGLDPDKAHQLSDWRRRPLPDDMRTYAVADTRYLLDIYDKLRLEL 180
>gi|321465548|gb|EFX76549.1| hypothetical protein DAPPUDRAFT_55085 [Daphnia pulex]
Length = 181
Score = 156 bits (394), Expect = 5e-35, Method: Composition-based stats.
Identities = 76/157 (48%), Positives = 103/157 (65%), Gaps = 3/157 (1%)
Query: 116 DVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIST 175
+V KP S TP +V+ + + L L S VDLEH+ RS+ G+TCLMQIST
Sbjct: 28 EVPRFKPVS--STPLIMVDTTEAFEHLLQDLLSQTVIGVDLEHHSDRSYRGITCLMQIST 85
Query: 176 RTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQA 235
D++VDTL+L + P L EVF DPT K+ GAD D++WLQRDFGIY+ N+FDT QA
Sbjct: 86 EKTDYIVDTLQLWDHLQP-LNEVFCDPTIVKIFQGADSDVIWLQRDFGIYVVNLFDTFQA 144
Query: 236 SRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 272
+ +L ++ L +LL H+C V+ +K+YQ DWR+RPL
Sbjct: 145 ASLLGFQKKGLSFLLQHYCQVHVDKKYQLEDWRIRPL 181
>gi|321465391|gb|EFX76392.1| hypothetical protein DAPPUDRAFT_55156 [Daphnia pulex]
Length = 181
Score = 155 bits (392), Expect = 9e-35, Method: Composition-based stats.
Identities = 78/157 (49%), Positives = 103/157 (65%), Gaps = 3/157 (1%)
Query: 116 DVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIST 175
+V KP S TP +V+ + + L L S VDLEH+ RS+ G+TCLMQIST
Sbjct: 28 EVPRFKPVS--STPLIMVDTTEAFELLLRDLLSQMVIGVDLEHHSERSYRGITCLMQIST 85
Query: 176 RTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQA 235
D++VDTL+L + P L EVF DP K+ GAD D++WLQRDFGIY+ N+FDT QA
Sbjct: 86 DKTDYIVDTLQLWDHLQP-LNEVFCDPKIVKIFQGADSDVIWLQRDFGIYVVNLFDTFQA 144
Query: 236 SRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 272
+ +L E+ SL +LL H+C V+ NK+YQ DWR+RPL
Sbjct: 145 ATLLGFEKKSLSFLLQHYCQVHVNKKYQLEDWRIRPL 181
>gi|321452793|gb|EFX64106.1| hypothetical protein DAPPUDRAFT_66464 [Daphnia pulex]
Length = 181
Score = 152 bits (383), Expect = 9e-34, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 99/148 (66%), Gaps = 1/148 (0%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+ TP +V+ + ++L L S VDLEH+ RS+ G+TCLMQIST D+++DT
Sbjct: 35 VSSTPLIVVDTTEAFEQLLQDLLSQTVIGVDLEHHSDRSYRGITCLMQISTDKTDYIIDT 94
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LKL + P L +VF DP K+ GAD D++WLQRDFGIY+ N+FDT QA+ +L ++
Sbjct: 95 LKLWDHLQP-LNKVFCDPNIVKIFQGADSDVIWLQRDFGIYVVNLFDTFQAASLLGFQKK 153
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPL 272
L +LL H+C V+ +K+YQ DWR+RPL
Sbjct: 154 GLSFLLQHYCQVHVDKKYQLEDWRIRPL 181
>gi|320583859|gb|EFW98072.1| hypothetical protein HPODL_0702 [Ogataea parapolymorpha DL-1]
Length = 729
Score = 152 bits (383), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 151/283 (53%), Gaps = 35/283 (12%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTE-DFVVDTL--KLRVQVGPYL 195
L +L +L AVDLEH+ YR++ G+TCLMQ++T T+ D+++D L +LR + L
Sbjct: 228 LDDLLVELSKCKVIAVDLEHHDYRTYHGITCLMQLTTDTKKDYLIDPLSPELRPHLV-NL 286
Query: 196 REVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCG 255
+F DP KV HGA DI+WLQRD G+Y+ ++FDT ASR L L R+SL +LL +
Sbjct: 287 NVIFTDPNIVKVFHGAFMDIIWLQRDLGLYVVSLFDTYHASRELGLGRHSLAHLLETYVK 346
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 315
+K++Q ADWR+RPL EM YA+ DTH+L+ ++ M +L P + + +V
Sbjct: 347 FKTSKKWQLADWRMRPLNSEMKNYAKADTHFLIEVFYKMHSELVQNPDKLKKVLYESRKV 406
Query: 316 YKRSYDVCR--------------------------QL--YEKELLSENSYLHIYGLQGAG 347
R Y+ QL ++ L+S ++ ++ A
Sbjct: 407 SNRRYEYSTFKPRNVKSANGFSSGAEVVATNQSVPQLPEFKNGLVSVHNPTNLPWSNLAD 466
Query: 348 LNAQQLA---VVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 387
N+ +A ++ L +WRD AR +DES Y++ + L+ +
Sbjct: 467 SNSIPMAKRPLLEVLFKWRDEQARREDESPRYIMSDFMLVSLV 509
>gi|373433349|emb|CCE67262.1| RRP6 protein, partial [Chironomus tentans]
Length = 133
Score = 150 bits (380), Expect = 2e-33, Method: Composition-based stats.
Identities = 65/121 (53%), Positives = 93/121 (76%), Gaps = 1/121 (0%)
Query: 151 EFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
EFA+D+EH++YR++LG+TCLMQISTRT+D+++DT+ LR ++ L E+F + K+ HG
Sbjct: 2 EFALDVEHHRYRTYLGITCLMQISTRTKDYIIDTIALREELH-VLNEIFTRSSIIKIFHG 60
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
+D DI WLQRD +Y+ NMFDT QA++ L L R SL +LL H+C + A+K +Q ADWR+R
Sbjct: 61 SDCDIEWLQRDLCLYVVNMFDTHQAAKRLGLARLSLAFLLKHYCNIEADKSFQLADWRIR 120
Query: 271 P 271
P
Sbjct: 121 P 121
>gi|321452292|gb|EFX63714.1| hypothetical protein DAPPUDRAFT_66837 [Daphnia pulex]
Length = 181
Score = 150 bits (379), Expect = 3e-33, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+ TP +V+ + + L L S VDLEH+ RS+ G+TCLMQIST D+++DT
Sbjct: 35 VSSTPLIMVDTTEAFELLLRDLLSQMVIGVDLEHHSDRSYRGITCLMQISTDKTDYIIDT 94
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
LKL + P L +VF DP K+ GAD D++WLQRDFGIY+ N+FDT QA+ +L ++
Sbjct: 95 LKLWDHLQP-LNKVFCDPNIVKIFQGADSDVIWLQRDFGIYVVNLFDTFQAASLLGFQKK 153
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPL 272
L +LL H+C V+ +K+YQ DWR+RPL
Sbjct: 154 GLSFLLQHYCQVHVDKKYQLEDWRIRPL 181
>gi|270012325|gb|EFA08773.1| hypothetical protein TcasGA2_TC006462 [Tribolium castaneum]
Length = 421
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 174/322 (54%), Gaps = 17/322 (5%)
Query: 99 HPLDNLSVLDFVDKDIGDVEAVKPP-SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLE 157
HP +L + + + VE ++ P +L++TP ++ L+EL LK+ E VD+E
Sbjct: 41 HPYKHLLNFEPTVEQLSRVENIEAPKTLKETPLCDIDTKTSLEELITDLKAWKELGVDVE 100
Query: 158 HNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVW 217
++ + + LTCL+QIST +D+++D + L+ ++ L EVF +P K+ H A D+ W
Sbjct: 101 YSDH-GYKALTCLVQISTPDKDYIIDAIALKDELHA-LNEVFTNPDIVKIFHSAVNDLKW 158
Query: 218 LQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEML 277
LQ+D G+++ N+FDT A + L ++ L+ LL + V +K Q D+R RPLP +
Sbjct: 159 LQQDLGVFVVNLFDTQIAMKALGYKKLGLDALLQDY-HVAKDKTMQRQDFRRRPLPPKFK 217
Query: 278 RYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSY 337
YAR D+HYL+ Y +K +L L V + C+ LY K + + +Y
Sbjct: 218 DYARVDSHYLIGFYHKLKNELIEA--------NLLRAVLDDCNNCCKILYPK--VEDEAY 267
Query: 338 LHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
L + ++ +QL V+ L WR IA+ D++ G VL + + Q+P+ +A +
Sbjct: 268 LSVRR-NVEEIHKRQLLVLEKLNSWRHQIAQYLDKNVGCVLSKSNMETLVLQMPSDSADI 326
Query: 398 RRLLKSKHSYIERYMGPVLSII 419
++ S+ S+++ ++ V+ I+
Sbjct: 327 MQI--SQSSHVKEHLDEVMQIL 346
>gi|91088803|ref|XP_968984.1| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
Length = 377
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 174/322 (54%), Gaps = 17/322 (5%)
Query: 99 HPLDNLSVLDFVDKDIGDVEAVKPP-SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLE 157
HP +L + + + VE ++ P +L++TP ++ L+EL LK+ E VD+E
Sbjct: 41 HPYKHLLNFEPTVEQLSRVENIEAPKTLKETPLCDIDTKTSLEELITDLKAWKELGVDVE 100
Query: 158 HNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVW 217
++ + + LTCL+QIST +D+++D + L+ ++ L EVF +P K+ H A D+ W
Sbjct: 101 YSDH-GYKALTCLVQISTPDKDYIIDAIALKDELHA-LNEVFTNPDIVKIFHSAVNDLKW 158
Query: 218 LQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEML 277
LQ+D G+++ N+FDT A + L ++ L+ LL + V +K Q D+R RPLP +
Sbjct: 159 LQQDLGVFVVNLFDTQIAMKALGYKKLGLDALLQDY-HVAKDKTMQRQDFRRRPLPPKFK 217
Query: 278 RYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSY 337
YAR D+HYL+ Y +K +L L V + C+ LY K + + +Y
Sbjct: 218 DYARVDSHYLIGFYHKLKNELIEA--------NLLRAVLDDCNNCCKILYPK--VEDEAY 267
Query: 338 LHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
L + ++ +QL V+ L WR IA+ D++ G VL + + Q+P+ +A +
Sbjct: 268 LSVRR-NVEEIHKRQLLVLEKLNSWRHQIAQYLDKNVGCVLSKSNMETLVLQMPSDSADI 326
Query: 398 RRLLKSKHSYIERYMGPVLSII 419
++ S+ S+++ ++ V+ I+
Sbjct: 327 MQI--SQSSHVKEHLDEVMQIL 346
>gi|71027523|ref|XP_763405.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350358|gb|EAN31122.1| hypothetical protein TP03_0385 [Theileria parva]
Length = 996
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 147/270 (54%), Gaps = 19/270 (7%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+K+++ D + KLK++ ++D+EH+ ++ G CL+Q+ST E++++D K+
Sbjct: 472 YKIIDNEADFNSMLDKLKNIRVLSLDVEHHDTETYRGFICLVQLSTPEENYIIDPFKIFG 531
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
++ L + DP K+MHGA D+VWLQRDF I++ N+FDT +A++VL L SL L
Sbjct: 532 KMNK-LNRLTTDPKILKIMHGASNDVVWLQRDFNIFVVNLFDTREAAKVLNLAEQSLAKL 590
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ + + NK +Q +DW RPL EML YA D+HYL+ +Y +K ++ S E+
Sbjct: 591 IQKYFNIKLNKRFQLSDWSKRPLDAEMLDYACCDSHYLIPLYSALKDEILS----KEDGR 646
Query: 310 TPLTEVYKRSYDVCR--------QLYEK-ELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 360
+ +V + C ++Y+K + +S+ + I L N ++ L
Sbjct: 647 VKIIQVMNNGRETCLKQYVDRGPEIYKKFKSISKRHKIRIPELDFVSYN-----LLLNLI 701
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+R+ +AR D+S ++ + + I K++
Sbjct: 702 AFRNFLARKLDKSEKLIIRDYQIALIIKRI 731
>gi|307102324|gb|EFN50630.1| hypothetical protein CHLNCDRAFT_59476 [Chlorella variabilis]
Length = 680
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 106/170 (62%), Gaps = 2/170 (1%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
F V+ V L A +L D A+D+EH+ ++ GLTCL+Q+ST ++D+++D+L LR
Sbjct: 116 FTWVDTVPKLAAAAMELYEQDRTALDVEHHSTHTYSGLTCLVQLSTGSKDYLIDSLALR- 174
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
Q L V +P KV+HG D VWLQRDFG++L N+FDT +A +VL + SL L
Sbjct: 175 QDMHLLAPVLSNPRICKVIHGGGNDAVWLQRDFGLFLVNVFDTEKACQVLGYHQRSLGAL 234
Query: 250 LHHFCGVNANKEY-QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298
L FCG+ A+K Q ADWR RPL E++ YAR D +LL I D + +L
Sbjct: 235 LQRFCGIQADKSLGQRADWRRRPLSAELIDYARRDVQHLLTIADRLGHEL 284
>gi|300121240|emb|CBK21621.2| unnamed protein product [Blastocystis hominis]
Length = 500
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 165/324 (50%), Gaps = 9/324 (2%)
Query: 107 LDFVDKDI-GDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFL 165
L+F D ++ GD+ SL+ T + ++ + + +L A+LKS +V + + YRS+L
Sbjct: 168 LEFPDWEVRGDLGVPPSCSLDDTVVEFIDTEEKIMDLIARLKSFRCISVSVIQHSYRSYL 227
Query: 166 GLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIY 225
G ++ IS+ D+ +D + L ++F +P+ KVM A ++WLQRDFG++
Sbjct: 228 GYCSMIMISSGEIDYAIDAIATHNSCWK-LNDLFTNPSIVKVMFNAGDQLLWLQRDFGVF 286
Query: 226 LCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTH 285
+ N+FD A ++L ++ S +L + N ++ ADWR RPL MLR+AR+ H
Sbjct: 287 MVNLFDVQMALKLLDEKQTSFSDVLMNRMNEYINMRFRRADWRTRPLTAGMLRFARQTAH 346
Query: 286 YLLYIYDIMKIKLSSMPKESEN-------SDTPLTEVYKRSYDVCRQLYEKELLSENSYL 338
LY+ ++ +L + ++ N D + E ++C + Y K + + +
Sbjct: 347 STLYLSSMVIEQLQNESEKHINRVGDGRVGDGQIVETLAACNELCLETYHKPVQTYETGE 406
Query: 339 HIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 398
G Q + L WRDV+AR DES YVLP L+++A +P T +LR
Sbjct: 407 STIAELGQIFQPVQKMLFLSLYYWRDVVARELDESVQYVLPLLPLLKVAHAVPKTKEELR 466
Query: 399 RLLKSKHSYIERYMGPVLSIIKNS 422
RLL + E+ + + SI+++
Sbjct: 467 RLLSPLSATAEQRLDRLFSIVESC 490
>gi|195328901|ref|XP_002031150.1| GM25821 [Drosophila sechellia]
gi|194120093|gb|EDW42136.1| GM25821 [Drosophila sechellia]
Length = 532
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 103/163 (63%), Gaps = 4/163 (2%)
Query: 229 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 288
MFDT +A++ L + R SL YLL H+ ++ +K Q ADWR+RPLP +++ YAR+DTH+L+
Sbjct: 1 MFDTHRAAKALNMARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLI 60
Query: 289 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 348
Y+Y+ M L + + L VY++S DVC++ Y K + S+L +
Sbjct: 61 YVYERMTNDLL----QQQAEPGLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSF 116
Query: 349 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ +QL + G+ EWRD AR++DES GYVLPN +++IA+ LP
Sbjct: 117 DNRQLYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLP 159
>gi|242079315|ref|XP_002444426.1| hypothetical protein SORBIDRAFT_07g021745 [Sorghum bicolor]
gi|241940776|gb|EES13921.1| hypothetical protein SORBIDRAFT_07g021745 [Sorghum bicolor]
Length = 112
Score = 141 bits (355), Expect = 2e-30, Method: Composition-based stats.
Identities = 69/114 (60%), Positives = 88/114 (77%), Gaps = 3/114 (2%)
Query: 274 DEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS 333
++ + YAREDTHYLLYIYD+M+ +L +ES + L EV+KRS ++C Q YEKELL+
Sbjct: 1 NDQVLYAREDTHYLLYIYDLMRQRLQ---RESTFENNLLLEVHKRSNEICLQFYEKELLT 57
Query: 334 ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 387
+ SYLHIYGL+ L+A+QLAVVA L EWRD IAR +DESTGY+LPN+ LIEI
Sbjct: 58 DTSYLHIYGLREHELDAKQLAVVAALHEWRDSIARQEDESTGYILPNKALIEIG 111
>gi|403371484|gb|EJY85623.1| 3'-5' exonuclease family protein [Oxytricha trifallax]
Length = 1077
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 113/189 (59%), Gaps = 15/189 (7%)
Query: 120 VKPPSLEQTPFKLVEEVKDL----KELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIST 175
+KP L+ TPF+ ++ + L KE+ +L + +VD+E++ + CL+QIST
Sbjct: 823 IKP--LQYTPFQWIDSQQQLEASIKEIKEELSHCNLLSVDIEYHNLAKHTCIVCLIQIST 880
Query: 176 RTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQA 235
++D+V+D LK + V Y++E+F DP+ K+ HG D DI L D I++ N+FDT +A
Sbjct: 881 YSKDYVIDVLKTKEFVAQYIQEIFVDPSIVKIFHGCDSDIQILASDLDIFVVNLFDTARA 940
Query: 236 SR-VLKLERN--------SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHY 286
+ + KL N SLE L F G+ +K +Q +DWR+RPLP M+ YAR D+H+
Sbjct: 941 YQAIFKLPENAPKHVDLTSLESLCDKFLGIQLDKFFQVSDWRIRPLPQGMMDYARSDSHF 1000
Query: 287 LLYIYDIMK 295
L+ +Y I +
Sbjct: 1001 LIPLYTIFQ 1009
>gi|321451818|gb|EFX63353.1| hypothetical protein DAPPUDRAFT_35911 [Daphnia pulex]
Length = 143
Score = 138 bits (347), Expect = 2e-29, Method: Composition-based stats.
Identities = 65/135 (48%), Positives = 88/135 (65%), Gaps = 1/135 (0%)
Query: 129 PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLR 188
P +V + + L L S VDLEH+ YRS+ G+TCLMQIST D+++DTLKL
Sbjct: 9 PLIMVGTKEAFEHLLQDLLSQTVIGVDLEHHSYRSYRGITCLMQISTEKTDYIIDTLKLW 68
Query: 189 VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
+ P L +VF DP K+ GAD D++WLQRDFGIY+ N+F T QA+ +L E+ L +
Sbjct: 69 DHLQP-LNKVFGDPNIVKIFQGADSDVIWLQRDFGIYIVNLFYTLQAASLLGFEKKGLPF 127
Query: 249 LLHHFCGVNANKEYQ 263
LL H+C V+ NK+YQ
Sbjct: 128 LLQHYCQVHVNKKYQ 142
>gi|50508632|dbj|BAD31028.1| polymyositis/scleroderma autoantigen 2 -like [Oryza sativa Japonica
Group]
gi|50509503|dbj|BAD31184.1| polymyositis/scleroderma autoantigen 2 -like [Oryza sativa Japonica
Group]
Length = 1031
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 101/185 (54%), Gaps = 28/185 (15%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
+ HGAD D++WLQRDF IY+ NMFDT +A VL + SL YLL +CGV +K Q D
Sbjct: 303 IFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSKPQKSLAYLLELYCGVTTDKTMQRED 362
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
WR+RPL EM++YAR D HYLLYI + + +L + K + SD+P ++
Sbjct: 363 WRLRPLTPEMIQYARCDAHYLLYIANCLASELHA--KTYDASDSPNDKI----------- 409
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
E S+ + +V +C WRD++AR DES YVL ++ + +
Sbjct: 410 ---NFFFEASH------------RSNMDLVWKICAWRDLMARMHDESLRYVLSDQAIASL 454
Query: 387 AKQLP 391
A +P
Sbjct: 455 AVSVP 459
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 29/160 (18%)
Query: 67 KPQEEYK-IVVNNANQPFQHVWLQ----------------KSEDSGRFIHPLDN--LSVL 107
KPQ ++ +V +N+ F+H+ Q S++S + +HP + S+L
Sbjct: 64 KPQARFRRVVADNSYSAFKHLRRQGAGPVGSGHHGSEAQPTSQESSQKVHPFEEEITSLL 123
Query: 108 ----DFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRS 163
DF + GD + P + T + VE L++LA L FAVD E + RS
Sbjct: 124 NNPPDFQNFMPGD----RCPEMS-TSYNWVETDAQLEDLARLLDDEKAFAVDTEQHSLRS 178
Query: 164 FLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPT 203
FLG T LMQIST+ D+++DT+ L V LR VF +P+
Sbjct: 179 FLGYTALMQISTQKADYLIDTIALH-DVMSILRPVFANPS 217
>gi|124359358|gb|ABD28519.2| Putative nucleolar protein, related [Medicago truncatula]
Length = 233
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 101/156 (64%), Gaps = 12/156 (7%)
Query: 1 MDVSFDEFSKARGENGEGDGNEGGFQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPF 60
+D DEF + E G +G F++ K ++KG I+ G + + K KV F
Sbjct: 86 VDEVVDEFHRVLMEQDMEKGEDGFFKI---KKERKGLILWGDDHGN------ETKKKVSF 136
Query: 61 HVPTITKPQEEYKIVVNNANQPFQHVWL--QKSEDSGRFIHPLDNLSVLDFVDKD-IGDV 117
HV T+ KPQ Y + V+N+NQPF+HVWL +K+ED RFIHPL+ SVLDFVDK+ I +
Sbjct: 137 HVHTLRKPQYHYNLAVDNSNQPFEHVWLEKEKTEDGERFIHPLEYYSVLDFVDKNSIESL 196
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFA 153
VKPP LE TPFKLVE+VK LKELAAKL VDEFA
Sbjct: 197 VPVKPPPLEFTPFKLVEDVKGLKELAAKLSLVDEFA 232
>gi|85000709|ref|XP_955073.1| 3'-5' exonuclease [Theileria annulata strain Ankara]
gi|65303219|emb|CAI75597.1| 3'-5' exonuclease, putative [Theileria annulata]
Length = 790
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 148/279 (53%), Gaps = 28/279 (10%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+KL++ D + KLK+ ++D+EH+ ++ G CL+Q+ST E++++D K+
Sbjct: 477 YKLIDNESDFNAMLDKLKNSRILSMDVEHHDTETYRGFICLLQLSTPQENYIIDPFKIFG 536
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
++ L + DP K+MHGA D++WLQRDF I++ N+FDT +A+ VL L SL L
Sbjct: 537 KMNK-LNRLTTDPKILKIMHGACNDVIWLQRDFNIFVVNLFDTREAAIVLNLPEQSLAKL 595
Query: 250 LHHFCGVNANKEYQNADWR---------VRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300
+ + + NK +Q ++W +RPL DEML YA D+HYL+ +Y+ +K ++ S
Sbjct: 596 VQKYFNIKLNKRFQISNWSKSYNCLNCGIRPLDDEMLDYACCDSHYLIPLYNTLKDEILS 655
Query: 301 MPKESENSDTPLTEVYKRSYDVCR--------QLYEK-ELLSENSYLHIYGLQGAGLNAQ 351
E+ + +V + C ++Y+K + +S+ + I L N
Sbjct: 656 ----KEDGRVKIIQVMNNGRETCLKQYVDRGPEIYKKFKSISKRHKIKIPELDFVSYN-- 709
Query: 352 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
++ + +R+ +AR D+S ++ + + + K++
Sbjct: 710 ---LLLNIIAFRNFLARKLDKSEKLIIRDYQIALLIKRM 745
>gi|414886884|tpg|DAA62898.1| TPA: hypothetical protein ZEAMMB73_296177 [Zea mays]
Length = 194
Score = 135 bits (341), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 103/183 (56%), Gaps = 10/183 (5%)
Query: 195 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 254
LR VF + + K+ HGAD DI+WLQRDF IY+ NMFDT +A +L + SL YLL +C
Sbjct: 4 LRPVFANSSICKIFHGADNDILWLQRDFHIYVVNMFDTAKACEILLKPQKSLAYLLEVYC 63
Query: 255 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE-SENSDTPLT 313
V +K Q DWR+RPL EM+ YAR D HYLLYI + + +L + + S +
Sbjct: 64 EVTTDKTMQREDWRLRPLTPEMIEYARTDAHYLLYIANCLASELHAKACDTSSDKINFFF 123
Query: 314 EVYKRSYDVCRQLYEKEL-----LSENSYLHIYGLQGAGLNAQQLA----VVAGLCEWRD 364
E RS VC QLY KE+ S + + LQ G ++++ + +V C WRD
Sbjct: 124 EASHRSNMVCMQLYSKEIESPPGASSATSILSRNLQTHGFDSKKSSEVKDLVWKFCAWRD 183
Query: 365 VIA 367
++
Sbjct: 184 LMV 186
>gi|118582016|ref|YP_903266.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
gi|118504726|gb|ABL01209.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
Length = 382
Score = 132 bits (332), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 153/303 (50%), Gaps = 18/303 (5%)
Query: 124 SLEQTP--FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV 181
SLEQ +++ + L E+A + S E AVDLE + + CL+QISTRTE ++
Sbjct: 3 SLEQRAGACEMITDGGRLAEVAGSINSEREVAVDLEMDSLHHYREKVCLIQISTRTESWL 62
Query: 182 VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL 241
+D L L+ + P L + VMHGAD DI L RD GI + N+FDT ASR+L +
Sbjct: 63 IDPLALK-DLSP-LAAPLGNRDILIVMHGADYDIRSLHRDHGIEVTNLFDTMIASRLLGI 120
Query: 242 ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
L LL G+ NK+YQ ADW RPL EM YA DT LL +YD+++ +L
Sbjct: 121 TEFGLAALLKARFGIELNKKYQKADWSKRPLSPEMRAYAVADTADLLRLYDMLRDEL--- 177
Query: 302 PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLC 360
E E + CR + + +SE +GAG L + LAV+ L
Sbjct: 178 ---LEKGRLAWLE------EECRLVCQAR-VSEKEGPLFLACKGAGKLRGRALAVLEELL 227
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK 420
+ RD AR D V+ TL+EIA++ P + A+L + I+R VLS +
Sbjct: 228 QLRDSQARELDRPPFKVISGDTLLEIAEKKPRSLAELSFIKGMTPGQIQRLGERVLSAVA 287
Query: 421 NSM 423
+++
Sbjct: 288 DAL 290
>gi|32564304|ref|NP_871964.1| Protein CRN-3, isoform b [Caenorhabditis elegans]
gi|26985796|emb|CAD59140.1| Protein CRN-3, isoform b [Caenorhabditis elegans]
Length = 594
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 120/212 (56%), Gaps = 32/212 (15%)
Query: 48 KVKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQPF------QH--------VWLQKSED 93
K ++R+E++ + + KPQ+ Y I +N+ PF +H + L ++
Sbjct: 173 KFRERREEAA---QMVVLEKPQKTYNISSDNSQAPFSSKLTVKHHAIEKRTGIVLHDDDE 229
Query: 94 SGR--FI---------HPLDNLSVLDFV--DKDIGDVEAVKPPSLEQTPFKLVEEVKDLK 140
SGR +I HP +L F + + E +K +L+ TP +++ + L+
Sbjct: 230 SGRRDWISAETETEEEHPY-IAEILHFKVPEAQLKSAECLKFTALKDTPLTMIDTKEKLE 288
Query: 141 ELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFK 200
L L SV EFAVDLEH+Q RS+LGLTCL+QISTR EDF++D + VG L E F
Sbjct: 289 ALTKTLNSVKEFAVDLEHHQMRSYLGLTCLIQISTRDEDFIIDPFPIWDHVG-MLNEPFA 347
Query: 201 DPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 232
+P KV HG+D D++WLQRD+G+++ N+FDT
Sbjct: 348 NPRILKVFHGSDSDVLWLQRDYGVHVVNLFDT 379
>gi|406962736|gb|EKD89001.1| hypothetical protein ACD_34C00239G0001 [uncultured bacterium]
Length = 380
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 147/293 (50%), Gaps = 16/293 (5%)
Query: 129 PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLR 188
P V + L E L+S AVD E N S+ CL+QIS+ DFV D +
Sbjct: 8 PAVWVNSSQGLTEAFQALESQSRIAVDTESNSLFSYQEKVCLIQISSPETDFVFDPFEFS 67
Query: 189 VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
L +F++P ++K+ H ++ D++ L+RD+ N+FDT ASR+L + L
Sbjct: 68 DL--SLLGSLFQNPKQEKIFHASEYDLICLKRDYHFKFINIFDTMIASRILGAPQVGLGS 125
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
LL ++ +N +K+YQ A+W +RPLP EML YAR DT+YL + D + ESE S
Sbjct: 126 LLQNYFDINLDKKYQRANWGLRPLPPEMLDYARLDTYYLFKLRDRL---------ESELS 176
Query: 309 DTPLTEVYKRSY-DVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVI 366
+ L ++ + + + C+ N H + L G+G + +Q+ ++ LC +RD
Sbjct: 177 NHGLLDLAQEDFVNACKAAGHSN--GNNQEAH-WKLAGSGHADPRQVTILKELCTYRDEQ 233
Query: 367 ARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
AR D VL N L+E++ P T +L + ++R+ +L +
Sbjct: 234 ARKADLPHFKVLSNDMLVEVSLHRPATLDELSLVPHFSEKLVKRHGSGLLKAV 286
>gi|308509326|ref|XP_003116846.1| CRE-CRN-3 protein [Caenorhabditis remanei]
gi|308241760|gb|EFO85712.1| CRE-CRN-3 protein [Caenorhabditis remanei]
Length = 488
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 115/209 (55%), Gaps = 18/209 (8%)
Query: 239 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298
LK + SL YL F V +K+YQ ADWR RPL + M+ YAREDTHYLLY YD+++ +L
Sbjct: 4 LKYPKFSLAYLAFRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYSYDMLREQL 63
Query: 299 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 358
K+ L VY D+C ++Y+K + YL L+ N++Q +
Sbjct: 64 LKQDKKD------LNVVYSECNDLCVRVYKKPVFKPKGYLTDLKLRFT-FNSRQDHALTS 116
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 418
L +WRDV+AR +DES +VLPN L+ +A+QLP + ++++ G +L I
Sbjct: 117 LYKWRDVVARQEDESPQFVLPNHMLLALAEQLPRDVGGIYACCNPLPHFVKKLAGQILKI 176
Query: 419 IKNSMQNAANFEVIAQKLKEERMEVASEE 447
I V A+++K E+++V ++E
Sbjct: 177 I-----------VEAREVKLEKVKVTAKE 194
>gi|320159696|ref|YP_004172920.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
gi|319993549|dbj|BAJ62320.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
Length = 380
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 136/274 (49%), Gaps = 14/274 (5%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L+ + L + ++ AVD E N ++ CL+Q S D++VD L G L E+
Sbjct: 18 LRRMMNHLLACEQIAVDTESNGLHAYQEQICLIQFSVPGADYLVDPLASVNLSG--LNEI 75
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNA 258
F +P +KV H A+ DI+ L+RDFG ++FDT A+R+L L LL GV
Sbjct: 76 FSNPGIEKVFHAAEYDILCLKRDFGFTFTHLFDTMIAARILGRSEVGLAALLEEHFGVTL 135
Query: 259 NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKR 318
+K YQ A+W RPLP ML YAR DTHYL+ + + + +L +E T L E
Sbjct: 136 DKRYQRANWARRPLPPAMLNYARLDTHYLIDLRNHLAKEL------AERGLTALAE---- 185
Query: 319 SYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIARADDESTGYV 377
D R +E+ + + G L QQ +++ L E+R+ AR + V
Sbjct: 186 -EDFLRVCETPAAPAESRPPMWWDVAGTTDLPPQQASLLQALVEFREQQARFANLPPFRV 244
Query: 378 LPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 411
L N LI+IA+ P T L + ++++ERY
Sbjct: 245 LSNAVLIQIAEANPMTLEDLAEVQGLSYAHLERY 278
>gi|403368461|gb|EJY84065.1| 3'-5' exonuclease family protein [Oxytricha trifallax]
Length = 547
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 105/180 (58%), Gaps = 9/180 (5%)
Query: 120 VKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIST-RTE 178
+K ++ + ++ L+E+ L VDLE++Q +S+ G CL+QI+T +
Sbjct: 72 IKFQEFKEGDYHYIDTPNKLQEILRSLYKYSVLGVDLENHQTKSYHGFLCLIQITTPDYQ 131
Query: 179 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA-DRDIVWLQRDFGIYLCNMFDTGQA-S 236
+++D LKLR ++ YL +F+ T K+ HG + DI WLQRDFG N+FDT ++
Sbjct: 132 TYLIDCLKLREEIKTYLGAIFESHTTLKIFHGCVNSDITWLQRDFGFATVNVFDTQESYK 191
Query: 237 RVLKLERNSLEYLLHHFCG--VNANKE----YQNADWRVRPLPDEMLRYAREDTHYLLYI 290
++ K +R SL +L +C V +KE +Q ADW +RPL EML YA D+HYL+YI
Sbjct: 192 KLFKGQRVSLLHLWTTYCKDRVKISKEQKNMFQKADWSMRPLSSEMLNYAAHDSHYLIYI 251
>gi|189426679|ref|YP_001953856.1| 3'-5' exonuclease [Geobacter lovleyi SZ]
gi|189422938|gb|ACD97336.1| 3'-5' exonuclease [Geobacter lovleyi SZ]
Length = 381
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 141/298 (47%), Gaps = 15/298 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ ++E L++L A+L E A+DLE + + CL+Q+S R ++VD L+L
Sbjct: 6 YTVIEHNHQLEQLCAELTDETELALDLEADSMHHYREKVCLLQLSNRAGTWLVDPLRLS- 64
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
+ P LR + P + V+HG D DI L RDFGI + MFDT A++ L L
Sbjct: 65 DLSP-LRVLLARPGLRTVLHGGDYDIRSLHRDFGIVVQQMFDTMVAAQFTGATEFGLAAL 123
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
L G+ +K +Q ADW RPL EM YA DT +LL + D + +L + + ++
Sbjct: 124 LREHFGIELDKRFQKADWSKRPLTTEMADYAAHDTAHLLELADRLHARLEQLGRREWVAE 183
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIAR 368
C L + + + +GAG L + LA++ L ++RD AR
Sbjct: 184 E------------CALLVGNRVAEKGNGPLFLNCKGAGKLKPRNLAILEALLQFRDQQAR 231
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 426
D V+P L++IA+ +P + + + RY +L++++ + A
Sbjct: 232 EADRPAFKVIPAEALLKIAELVPAAVRDMNGIAGLTPRLLGRYGEQLLTVVRQGLAVA 289
>gi|404491882|ref|YP_006715988.1| ribonuclease D [Pelobacter carbinolicus DSM 2380]
gi|77544021|gb|ABA87583.1| ribonuclease D, putative [Pelobacter carbinolicus DSM 2380]
Length = 375
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 138/266 (51%), Gaps = 17/266 (6%)
Query: 129 PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLR 188
P LV++V + LA +L+ AVDLE + S+ CL+QIST T +VD L
Sbjct: 4 PPILVDDVS-IARLAQELRDEAVIAVDLEADSLHSYQEKVCLLQISTSTRTVLVDPLA-- 60
Query: 189 VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
V+ L V DPT +K+ H AD DI L RDF I + +FDT A ++L +R L
Sbjct: 61 VEDLAALAPVLADPTIRKIFHAADYDIRCLFRDFRIEVQGLFDTMIACQMLGEKRVGLAD 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
+L + V +K YQ ADW RPL + M+ YA EDT +L + +I++ +L M + S
Sbjct: 121 VLAKYLDVELDKRYQRADWSKRPLEEGMILYAMEDTCHLHRLTEILEGRLRDMGRLSWAE 180
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIA 367
+ L +K SEN+ ++GAG L +QLAV+ L +WRD A
Sbjct: 181 EE-------------FALLQKVRHSENNGPLFMRVKGAGLLERKQLAVLEQLLQWRDEEA 227
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTT 393
D V+ N+TL+ +A+ +P +
Sbjct: 228 CRRDRPAFKVVGNKTLLGLAQIMPGS 253
>gi|308270300|emb|CBX26912.1| hypothetical protein N47_A09410 [uncultured Desulfobacterium sp.]
Length = 382
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 141/292 (48%), Gaps = 15/292 (5%)
Query: 129 PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLR 188
P ++E + LK+ +K + DLE + F CL+Q++T+ FV+DT+KL+
Sbjct: 8 PVTIIETLSGLKDALVNIKEEKKIGFDLEADSMHHFPEKVCLLQVATKNCIFVIDTIKLK 67
Query: 189 VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
L+ +F D K+ HGAD D+ L RDF I + N+FD+ ASR L ++ LE
Sbjct: 68 EL--SLLKPIFADNEITKIFHGADYDVRSLFRDFNIEINNLFDSELASRFLGVKETGLEA 125
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
++ H V K++ DW RPL D+ML YA +D YL+ +Y+I+ E E +
Sbjct: 126 VIRHRFNVYLEKKFTKRDWSKRPLIDDMLHYAADDVRYLVPLYEIL---------EKELN 176
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIA 367
D K D+ + E +L +GAG L + LAV+ L +R IA
Sbjct: 177 DIGRLFWVKEECDILCSVRPDANNGEPLFLK---FKGAGKLKPENLAVLEALLGFRKEIA 233
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
D ++ N L+++A+ P + K+ ++ Y +LSII
Sbjct: 234 LKKDVPFFKIIGNAALLKLAETRPDSLNKIINTNVLSKRQMDMYGKDLLSII 285
>gi|383761955|ref|YP_005440937.1| ribonuclease D [Caldilinea aerophila DSM 14535 = NBRC 104270]
gi|381382223|dbj|BAL99039.1| ribonuclease D [Caldilinea aerophila DSM 14535 = NBRC 104270]
Length = 395
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 106/368 (28%), Positives = 165/368 (44%), Gaps = 36/368 (9%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTE------DFVVDTL 185
L+ L+ L L+ FA+D E N S+ G CL+QIST DF+VD L
Sbjct: 11 LIYTTSSLRRLVDYLRGQPRFALDTESNSLYSYQGKVCLIQISTYATGKEEILDFLVDPL 70
Query: 186 KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS 245
+L+ + P L E+ DP + VMH AD DI+ L R +G +FDT A+R+L ++
Sbjct: 71 RLK-DLSP-LGELLVDPAIEVVMHAADNDILMLYRSYGFRFGRVFDTQLAARILGWKQVG 128
Query: 246 LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES 305
L +L G+ +NK Q DW RPL E + YA+ DTHYLL + D + +L +
Sbjct: 129 LAAILEKHFGIVSNKRMQRTDWGKRPLTPEQIAYAQMDTHYLLPLRDRLAEELRRKGRWE 188
Query: 306 ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
E D T S D ++ + E ++ + ++ + + L V+ L WR+
Sbjct: 189 EALDAFATLT---SSDPATRMPD-----ERTFWQMRAVR--TVPQECLGVLEALWRWREQ 238
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQN 425
A++ D V+ + TLIE+AK P T L+ + R+ +L +I Q
Sbjct: 239 KAQSLDRPPFKVVNDATLIELAKTQPLTLDALKETPGLSPLQVRRFGEELLQVIHAGRQR 298
Query: 426 AA----------------NFEVIAQKLKEERMEVASEE--TEVLVLDTSSNLKIPNVGRE 467
+ L+ R EVA + +VL S+ L I +
Sbjct: 299 PTPTPPDDEGRPEPMLDEAVQARYNALRRWRTEVAQQRGVDADIVLPNSALLAIATLNPA 358
Query: 468 SVDGVDAL 475
++D + AL
Sbjct: 359 TLDALAAL 366
>gi|158523201|ref|YP_001531071.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
gi|158512027|gb|ABW68994.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
Length = 382
Score = 122 bits (306), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 130/272 (47%), Gaps = 27/272 (9%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
Q PF V L ++ +L+ V AVDLE + F CL+QI + F++D L
Sbjct: 6 QQPFTFVNTPSGLAQVVHRLERVPVVAVDLEADSLHHFTEKVCLIQIGVNGDAFLIDPLA 65
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
L L+ F DP KV+HGAD D+ L RDFGI + +FD+ ASR L ++ L
Sbjct: 66 LSDLSS--LKPFFADPGVIKVLHGADYDVRSLYRDFGITITGLFDSEIASRFLGVQSTGL 123
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
+++ GV +K + DW RPLP++ML YA D YL+ +Y ++ +L M +
Sbjct: 124 NDVVNRRFGVTMDKGCRKQDWTQRPLPEKMLSYAALDVRYLVDLYHQLQNELQQMGRAEW 183
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLH------IYGLQGAG-LNAQQLAVVAGL 359
++ E ELLS Y + +GAG L+ + LAV+ L
Sbjct: 184 VAE------------------ECELLSRVRYANGEDTPLFVRFKGAGRLSRRTLAVLEAL 225
Query: 360 CEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
R +AR D V+ N L+ +A++ P
Sbjct: 226 LVARQKMARKKDRPPFKVMGNDALLRLAQERP 257
>gi|118348280|ref|XP_001007615.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89289382|gb|EAR87370.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 964
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 98/155 (63%), Gaps = 7/155 (4%)
Query: 152 FAVDLEH---NQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYL-REVFKDPTKKKV 207
F +DLE+ N+ ++ LG C +QIST DF++D + LR Q+ L + +F + TK K+
Sbjct: 775 FGIDLEYYSENKDKN-LGFVCTIQISTVNMDFMIDAMALRNQINQLLNKSLFLNKTKIKI 833
Query: 208 MHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS--LEYLLHHFCGVNANKEYQNA 265
+HG + DI WL+ DF I + N+FDT A ++K ++ S L+ L + GV +K YQ +
Sbjct: 834 LHGCENDIKWLKNDFDIDIVNLFDTMFAEMIIKNKQQSYSLKNLSQDYLGVELDKSYQIS 893
Query: 266 DWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300
DWR+RPLP M+ YAR D+ LL ++ IMK L+S
Sbjct: 894 DWRIRPLPTPMMNYARVDSFILLRLFPIMKQMLTS 928
>gi|116747862|ref|YP_844549.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
gi|116696926|gb|ABK16114.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
Length = 295
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 141/273 (51%), Gaps = 14/273 (5%)
Query: 129 PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLR 188
P ++E+ +L L +L + AVD E N + ++ CL+QIS+ D+++D L L+
Sbjct: 3 PVVVIEKPSELDALVRQLSTARHLAVDTESNSFYAYFDRVCLIQISSPERDYIIDPLSLK 62
Query: 189 -VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLE 247
+ V L +F++P +KV+H A D++ L+RDF +FDT A ++L ++ L
Sbjct: 63 DLSV---LGRLFENPRIEKVLHAASNDVLGLRRDFQFRFNGLFDTAIACKLLGYKQLGLS 119
Query: 248 YLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
+L GV+ NK +Q DW RPL + L YAR DTHYL+ + ++ L S +E
Sbjct: 120 KILETHFGVSLNKRWQRYDWGKRPLVPDQLDYARLDTHYLIALRHMLAADLQSRELWAEA 179
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
E ++++ + +Q+ EK +L I G L+A +++ L +R+ A
Sbjct: 180 -----CEAFEKASE--QQVPEKT-FHPRGFLQING--ARSLDAAGKSILKALYMFREKEA 229
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
R D + ++ N L+ +A P + ++ R+
Sbjct: 230 RRRDRAPFRIMSNEALLRLADARPDSVDEISRI 262
>gi|322417808|ref|YP_004197031.1| 3'-5' exonuclease [Geobacter sp. M18]
gi|320124195|gb|ADW11755.1| 3'-5' exonuclease [Geobacter sp. M18]
Length = 377
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 143/303 (47%), Gaps = 35/303 (11%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK-LRVQ 190
LV + K L EL +L A DLE + + CL+Q+S+ +E+ ++D L + V+
Sbjct: 15 LVTDQKTLDELVERLSKESVLAFDLEADSLHHYTEKVCLIQVSSESENRLIDPLAPIDVR 74
Query: 191 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLL 250
V L +F +P KK+ HGAD D+ L RDFGI + N+FDT AS+ L L LL
Sbjct: 75 V---LAPIFANPAIKKIFHGADYDMRSLYRDFGIEVVNLFDTMIASQFLGESEFGLAALL 131
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD------IMKIKLSSMPKE 304
GV +K YQ ADW RP EML YA +DT L+ +Y + K +L+ + +E
Sbjct: 132 KKRFGVELDKRYQKADWSKRPFSQEMLEYAMKDTSLLIELYRQLEAELLAKGRLAWVEEE 191
Query: 305 SE---NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLC 360
SE +P S L +GA + ++LAV+ L
Sbjct: 192 SELVAGVRSP---------------------SREGELMCLRFKGANKMKPRELAVLEELL 230
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK 420
++RD AR D +L N L E+A++ P + +L + IER +L I
Sbjct: 231 KFRDEKARIADVPPFRILSNDLLRELAEKQPRSNFELVGIHTMSSKLIERLGRGLLQAIA 290
Query: 421 NSM 423
N +
Sbjct: 291 NGL 293
>gi|148266297|ref|YP_001233003.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
gi|146399797|gb|ABQ28430.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
Length = 409
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 160/338 (47%), Gaps = 33/338 (9%)
Query: 126 EQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTL 185
+Q ++E+ + L L +L + A DLE + + CL+Q+ST +E ++D L
Sbjct: 32 QQESTDIIEDQQALNRLVERLNTETTLAFDLEADSLHHYTEKVCLIQVSTNSETALIDPL 91
Query: 186 KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS 245
+ + P L + +P +KV HGAD D+ L RDFG + N+FDT AS+ L +
Sbjct: 92 A-PLDLSP-LAPILANPAVRKVFHGADYDMRSLYRDFGFEVRNLFDTMIASQFLGEKEVG 149
Query: 246 LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY----DIMKIK--LS 299
L L GV +K+YQ ADW RP +M+ YA +DT L+ +Y D ++ K L+
Sbjct: 150 LAAALKKRFGVELDKKYQKADWSKRPFSPQMIEYAMKDTSLLIKLYLQLEDELRAKGRLA 209
Query: 300 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 359
+ +ESE ++ V S D +E +L G A L + LAV+ L
Sbjct: 210 WVEEESEI----VSCVRAASRD-----------NEPLFLRFKG--AAKLKPRSLAVLEKL 252
Query: 360 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
+RD AR D +L N L E+A+ LP TAA L + I+ Y +L+++
Sbjct: 253 LLFRDERARKRDVPPFRILGNEPLRELAELLPRTAADLTGIPGISQKLIDTYGREILNVV 312
Query: 420 KNSMQNAAN--------FEVIAQKLKEERMEVASEETE 449
+ A VI + +EER++ E E
Sbjct: 313 AQGLSIPAEKLPHYPTVQRVIKDRYQEERLKRLKEWRE 350
>gi|253698875|ref|YP_003020064.1| 3'-5' exonuclease [Geobacter sp. M21]
gi|251773725|gb|ACT16306.1| 3'-5' exonuclease [Geobacter sp. M21]
Length = 377
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 138/294 (46%), Gaps = 17/294 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK-LRVQ 190
LV + K L EL +L A DLE + + CL+Q+S+ +ED ++D L + V+
Sbjct: 15 LVTDQKTLDELVERLSRESVLAFDLEADSLHHYTEKVCLIQVSSASEDRLIDPLAPIDVK 74
Query: 191 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLL 250
V L +F +P KK+ HGAD D+ L RDFGI + N+FDT AS+ L L LL
Sbjct: 75 V---LAPIFANPAIKKIFHGADYDMRSLYRDFGIEVVNLFDTMIASQFLGESEFGLAALL 131
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
GV +K YQ ADW RP EML YA +DT L+ +Y ++ +L + + +
Sbjct: 132 KKRFGVELDKRYQKADWSKRPFSQEMLDYAMKDTSLLIELYRQLEAELKQKGRLAWVEEE 191
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIARA 369
RS S L +GA + ++LAV+ L +RD AR
Sbjct: 192 SELVAGVRSP------------SREGELMCLRFKGASKMKPRELAVLEELLRFRDEKARL 239
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 423
D +L N L E+A++ P +L + IER +L I N +
Sbjct: 240 ADVPPFRILSNDLLRELAEKQPRNNFELVGIHTMSSKLIERLGRGLLQAIANGL 293
>gi|197116637|ref|YP_002137064.1| ribonuclease D [Geobacter bemidjiensis Bem]
gi|197085997|gb|ACH37268.1| ribonuclease D, putative [Geobacter bemidjiensis Bem]
Length = 377
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 138/294 (46%), Gaps = 17/294 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK-LRVQ 190
LV + K L EL +L A DLE + + CL+Q+S+ +ED ++D L + V+
Sbjct: 15 LVTDQKTLDELVERLSRESVLAFDLEADSLHHYTEKVCLIQVSSTSEDRLIDPLAPIDVK 74
Query: 191 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLL 250
V L +F +P KK+ HGAD D+ L RDFGI + N+FDT AS+ L L LL
Sbjct: 75 V---LAPIFANPAIKKIFHGADYDMRSLYRDFGIEVVNLFDTMIASQFLGESEFGLAALL 131
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
GV +K YQ ADW RP EML YA +DT L+ +Y ++ +L + + +
Sbjct: 132 KKRFGVELDKRYQKADWSKRPFSQEMLDYAMKDTSLLIELYRQLEAELKQKGRLAWVEEE 191
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIARA 369
RS S L +GA + ++LAV+ L +RD AR
Sbjct: 192 SELVAGVRSP------------SREGELMCLRFKGASKMKPRELAVLEELLRFRDEKARL 239
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 423
D +L N L E+A++ P +L + IER +L + N +
Sbjct: 240 ADVPPFRILSNDLLRELAEKQPRNNFELVGIHTMSSKLIERLGRGLLQAVANGL 293
>gi|86158027|ref|YP_464812.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774538|gb|ABC81375.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
Length = 294
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 136/274 (49%), Gaps = 14/274 (5%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
A+D E N + + CL+Q+STRT+DFVVD + V V P L E+ D ++ V+HGA
Sbjct: 35 LALDTESNSFHVYRERVCLLQLSTRTQDFVVDPIS--VDVRP-LGEILCD-GREVVLHGA 90
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRP 271
D D+ L R++G + +FDT A+R L L L+ GV +K +Q +DW RP
Sbjct: 91 DYDVRCLHREYGWRIPRLFDTMIAARRLGRPGLGLSALVESHFGVRLSKAFQRSDWGRRP 150
Query: 272 LPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL 331
L + L YA DTH+LL ++D++ +L+ + L E +K S + + + +
Sbjct: 151 LTPDQLAYAALDTHFLLPLFDLLTGELA--------ARGALDEAWKESQRIASVVARERV 202
Query: 332 LSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ + G + L+A AV+ L R+ ARA D VL ++EIA++ P
Sbjct: 203 FDPEGWRRVKGAR--ELDAPGKAVLRALWIAREERARASDRPPFKVLGEPAMLEIARRRP 260
Query: 392 TTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQN 425
T L + S + R + + +K + Q
Sbjct: 261 ATREALAAIPGVTPSVLGRMGETIAAALKAAGQG 294
>gi|226228424|ref|YP_002762530.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
gi|226091615|dbj|BAH40060.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
Length = 388
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 136/267 (50%), Gaps = 14/267 (5%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
Q P L + V+ + A L V A+D E + F+ L+Q+ST + V+D L
Sbjct: 4 QAPHYL-DTVETVDTFLAGLNGVRAIALDTEGASFHRFVDRIYLLQLSTADHEAVIDPLP 62
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
+ L + +DP + V+H AD D+ L++D+G + ++FDT A+++L + L
Sbjct: 63 --IGTPTRLGVLLEDPQVEVVLHDADYDLRLLRQDYGWRVTHLFDTRVAAQLLGIRAFGL 120
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
LL F G+ +K++Q ADW +RPL +ML YA DT +LL + D + +L + S
Sbjct: 121 AALLEQFFGIKLDKKHQRADWSMRPLTADMLDYAAHDTRHLLGLRDRLHDELVQKGRWSW 180
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
E + R+ +E E + S+L + G + LN ++LA + L WRD I
Sbjct: 181 AQ-----EEFTRAEGTR---WEPE-APDTSFLRLKGAR--DLNRRELARLRELVRWRDGI 229
Query: 367 ARADDESTGYVLPNRTLIEIAKQLPTT 393
A D +T V N L+++A+Q P T
Sbjct: 230 AAELDRATFRVAGNEVLLDLARQAPAT 256
>gi|357509039|ref|XP_003624808.1| hypothetical protein MTR_7g087760 [Medicago truncatula]
gi|355499823|gb|AES81026.1| hypothetical protein MTR_7g087760 [Medicago truncatula]
Length = 284
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/132 (51%), Positives = 80/132 (60%), Gaps = 21/132 (15%)
Query: 55 KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQK--SEDSGRFIHPLDNL-------- 104
K KV FHV T+ K Q Y + V+N+NQ F+HVWL+K +ED RF+HPL +
Sbjct: 28 KKKVSFHVHTLRKLQYHYNLAVDNSNQTFEHVWLEKEKTEDGERFVHPLIRIGKYRAGIG 87
Query: 105 ----------SVLDFVDKD-IGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFA 153
SVLDFVDK+ I + VKPP LE TPFKLVEEVK LKELAAKL VDEFA
Sbjct: 88 AGYAEDTEYYSVLDFVDKNSIESLVPVKPPPLECTPFKLVEEVKALKELAAKLSLVDEFA 147
Query: 154 VDLEHNQYRSFL 165
V RS +
Sbjct: 148 VTTNSICTRSLM 159
>gi|381152499|ref|ZP_09864368.1| ribonuclease D [Methylomicrobium album BG8]
gi|380884471|gb|EIC30348.1| ribonuclease D [Methylomicrobium album BG8]
Length = 387
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 147/306 (48%), Gaps = 34/306 (11%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
++ T + ++ L EL ++ S A+D E + +++ CL+QI+T VD
Sbjct: 1 MKTTTIEYIDAPAQLAELCTRIHSTPWIAIDTEFLREKTYYPKFCLLQIATPDWVACVDP 60
Query: 185 LKLRVQVGPYLREVFK---DPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL 241
+ L P L E+F+ +P KV+H + +D+ + G +FDT A+ +L
Sbjct: 61 IAL-----PRLDELFEALYNPGIVKVLHSSRQDLEIFYQLTGKLPSPIFDTQVAAPLLGY 115
Query: 242 ERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300
+ N L+ H VN NK + ADW RPL +E ++YA +D YL IY +M+ KLS+
Sbjct: 116 QDNPGYAMLVSHLLNVNLNKAHTRADWSKRPLTEEEIQYAADDVIYLCRIYQLMRDKLSA 175
Query: 301 M-------PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 353
+ P +E S+ L EV L E+++ I G L +QL
Sbjct: 176 LGRLDWLQPDFAELSNPALYEV----------------LPEHAWRRIKG--KNKLTGKQL 217
Query: 354 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 413
+++ L EWR+ A+ ++ G++L + L +IAK P TAA L ++ + RY
Sbjct: 218 SIIQALAEWRESTAQNENRPKGWLLRDELLFDIAKLQPETAADLAKIRGINERTVSRYGA 277
Query: 414 PVLSII 419
+ II
Sbjct: 278 ALCRII 283
>gi|222053523|ref|YP_002535885.1| 3'-5' exonuclease [Geobacter daltonii FRC-32]
gi|221562812|gb|ACM18784.1| 3'-5' exonuclease [Geobacter daltonii FRC-32]
Length = 390
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 134/292 (45%), Gaps = 21/292 (7%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E KDL L +L + A DLE + + CL+Q+S ++ ++D L V +
Sbjct: 22 IIETQKDLNLLVEQLSRENILAFDLEADSLHHYTEKVCLIQVSNLSQTALIDPLA-PVDL 80
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLH 251
P L V D +KV HGAD D+ L RDFG+ +CNMFDT A + L + L L
Sbjct: 81 SP-LAPVLADRGIRKVFHGADYDMRSLYRDFGLEVCNMFDTMIACQFLGEKEVGLAAALK 139
Query: 252 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESEN 307
GV NK+YQ ADW RP EM+ YA+ DT L+ +Y ++ +L + + E E+
Sbjct: 140 KRFGVELNKKYQKADWSKRPFSAEMIEYAKMDTALLIRLYLQLEEELRAKGRLEWVEEES 199
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
R + E ++ G A L + LAV+ L RD A
Sbjct: 200 ELVSCVRAASRDH-------------EPLFIRFKG--AAKLKPRALAVLEELLRMRDEKA 244
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
R D +L N L E+A+ P T A L + IE + +L ++
Sbjct: 245 RKKDVPPFRILGNEPLRELAELQPRTLADLNGIPGLTQKLIETFGREILKVV 296
>gi|224370825|ref|YP_002604989.1| Rnd [Desulfobacterium autotrophicum HRM2]
gi|223693542|gb|ACN16825.1| Rnd [Desulfobacterium autotrophicum HRM2]
Length = 377
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 130/271 (47%), Gaps = 13/271 (4%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ L+E +DL LK+ A DLE + F CL+Q++ + FVVD L +
Sbjct: 4 YTLIENDEDLAARCDLLKTEKRLAFDLEADSMHHFKEKVCLVQMADPNDSFVVDPLS--I 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
L+ VF+DP KV HG+D DI L RDF I++ N+FDT A R L +++ SL L
Sbjct: 62 DDLSVLKPVFEDPAITKVFHGSDFDIRSLDRDFDIHVNNLFDTEIACRFLGIQKRSLAAL 121
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
L + +K +Q DW RPL EM+ Y+ D YLL + DI+K +L D
Sbjct: 122 LEKHFDLTLDKRFQKTDWSRRPLSKEMIAYSVNDVAYLLELSDILKKRL---------ED 172
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
+ +++ ++ +E +L G + + LAV+ L ++R +A
Sbjct: 173 EGRLAWAEEEFELQTRVRHDNNGNEPLFLKFKG--SGKMGRRSLAVLESLLQFRKTLAVE 230
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
D+ ++ + + ++A P T L+ L
Sbjct: 231 KDKPLFKIISSEAIAKMAANQPETLHSLKEL 261
>gi|220917449|ref|YP_002492753.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955303|gb|ACL65687.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
Length = 288
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 124/242 (51%), Gaps = 14/242 (5%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
A+D E N + + CL+Q+STR +DFVVD + V V P L E+ D ++ V+HGA
Sbjct: 31 LALDTESNSFHVYRERVCLLQLSTRAQDFVVDPIS--VDVRP-LGEILCD-GREVVLHGA 86
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRP 271
D D+ L R++G + +FDT A+R L L L+ GV +K +Q +DW RP
Sbjct: 87 DYDVRCLHREYGWRIPRLFDTMIAARRLGRPGLGLSALVEAHFGVRLSKAFQRSDWGRRP 146
Query: 272 LPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL 331
L + L YA DTH+LL ++D++ +L+ + L E +K S + + + +
Sbjct: 147 LTPDQLAYASLDTHFLLPLFDLLTGELA--------TRGALEEAWKESQRIASVVARERV 198
Query: 332 LSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ I G + L+A AV+ L R+ ARA D VL ++EIA++ P
Sbjct: 199 FDPEGWRRIKGSR--ELDAPGKAVLRALWIAREDRARASDRPPFKVLGEPAMLEIARRRP 256
Query: 392 TT 393
T
Sbjct: 257 AT 258
>gi|197122666|ref|YP_002134617.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
gi|196172515|gb|ACG73488.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
Length = 288
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 124/242 (51%), Gaps = 14/242 (5%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
A+D E N + + CL+Q+STR +DFVVD + V V P L E+ D ++ V+HGA
Sbjct: 31 LALDTESNSFHVYRERVCLLQLSTRAQDFVVDPIS--VDVRP-LGEILCD-GREVVLHGA 86
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRP 271
D D+ L R++G + +FDT A+R L L L+ GV +K +Q +DW RP
Sbjct: 87 DYDVRCLHREYGWRIPRLFDTMIAARRLGRPGLGLSALVEAHFGVRLSKAFQRSDWGRRP 146
Query: 272 LPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL 331
L + L YA DTH+LL ++D++ +L+ + L E +K S + + + +
Sbjct: 147 LTPDQLAYAALDTHFLLPLFDLLTGELA--------TRGALEEAWKESQRIASVVARERV 198
Query: 332 LSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ I G + L+A AV+ L R+ ARA D VL ++EIA++ P
Sbjct: 199 FDPEGWRRIKGSR--ELDAPGKAVLRALWIAREDRARASDRPPFKVLGEPAMLEIARRRP 256
Query: 392 TT 393
T
Sbjct: 257 AT 258
>gi|153005072|ref|YP_001379397.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
gi|152028645|gb|ABS26413.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
Length = 296
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 143/292 (48%), Gaps = 17/292 (5%)
Query: 120 VKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTED 179
+ PP TP LV + L L ++++ A+D E N + + CL+Q+STR D
Sbjct: 1 MTPPRQGATPL-LVADSSSLSRLVEEVRAEPVVALDTESNSFHVYRERICLLQVSTRAAD 59
Query: 180 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 239
++VD L V P L EV D ++ V+HGAD D+ L+R++G +L +FDT A+R L
Sbjct: 60 YIVDPLA--VDPSP-LGEVLCD-GRETVLHGADYDVRCLRREYGWHLPRLFDTMAAARRL 115
Query: 240 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
+ L L+ GV +K +Q +DW RPL L YA DTHYLL + D++ +L
Sbjct: 116 GRQGLGLSALVEAHFGVRLSKTFQRSDWGQRPLTAAQLAYAALDTHYLLALRDMLAGELD 175
Query: 300 SMPKESENSDTPLTEVYKRSYDVCRQLYEKE-LLSENSYLHIYGLQGAGLNAQQLAVVAG 358
++ +E +R ++ + +E + + + G + L+ LAV+
Sbjct: 176 TLGA---------SEQARREFERIAAVVARERVFDPEGFRRLRGAR--ELDPAGLAVLRA 224
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 410
+ R+ A D VL +I IA++LP A +L R+ S + R
Sbjct: 225 IYVAREERASGLDRPPFKVLGEDAMIAIARRLPRDADELGRIPGVTPSVMRR 276
>gi|218779802|ref|YP_002431120.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
gi|218761186|gb|ACL03652.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
Length = 388
Score = 112 bits (280), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 133/276 (48%), Gaps = 23/276 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTL-KLR 188
F LV+ L +L L+S AVDLE + + CL+QI++ +++VD L
Sbjct: 15 FVLVDNDNALADLTQSLQSQKCIAVDLEADSMFHYQEKACLLQITSNGLNYIVDPLCDCD 74
Query: 189 VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
V+ L + ++ +K+ HGAD D+ L RDFGI L N+FDT A+R L + L
Sbjct: 75 VKA---LAPILENDEIQKIFHGADYDVRCLFRDFGIELHNLFDTQVAARFLGEPQTGLAP 131
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
LL GV K+YQ +W +RPLP EM+ YA DT +LL + +I+K KE
Sbjct: 132 LLESRFGVQLEKKYQKKNWSLRPLPPEMMAYAANDTVHLLELAEILK-------KELVEK 184
Query: 309 DTPLTEVYKRSYDV---CRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRD 364
D R + V C L + N +GAG L+ + L V+ + RD
Sbjct: 185 D--------RLFWVEEECEILTHARPMPPNDGPLFLRFRGAGKLDPRSLQVLENILHVRD 236
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+A+ + VL N ++E+A++ P L L
Sbjct: 237 DLAKKWNRPLFKVLGNTPILEMAQKRPLNTKGLVSL 272
>gi|326529851|dbj|BAK08205.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 160
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 70/100 (70%)
Query: 55 KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDI 114
K K +H P+I +PQ+ Y I VNN N PF HVWL++S+D R IHPL+ L V F+D+++
Sbjct: 57 KPKAVYHDPSIPRPQDVYLIRVNNCNSPFDHVWLERSDDGTRPIHPLEKLPVEQFIDRNV 116
Query: 115 GDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAV 154
+ E V+P ++ TPF LVE++K L EL KLK V+EFAV
Sbjct: 117 PESEPVRPADVDDTPFTLVEDLKGLTELVNKLKDVNEFAV 156
>gi|418749157|ref|ZP_13305449.1| 3'-5' exonuclease [Leptospira licerasiae str. MMD4847]
gi|418757399|ref|ZP_13313587.1| 3'-5' exonuclease domain / HRDC domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|384117070|gb|EIE03327.1| 3'-5' exonuclease domain / HRDC domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|404276226|gb|EJZ43540.1| 3'-5' exonuclease [Leptospira licerasiae str. MMD4847]
Length = 389
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
Q+ + +V+ V+ L+ L D ++D E + Y ++ CL+QIS++ ++++ D ++
Sbjct: 4 QSDYIVVDNVRSLQLALITLSQSDCLSIDTESSGYYTYYSKVCLIQISSKGKNYIFDPIR 63
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
L G L +F++P K+ H A DI L+RDFG N+ DT +SR+L LE+NSL
Sbjct: 64 LDDLNG--LGPLFENPNILKIFHSASDDIKALKRDFGFKFINIADTMFSSRLLDLEQNSL 121
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
YL+ H+ V +K+ Q ++W RPL L+YA DT YL I+ M
Sbjct: 122 LYLVEHYHKVKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLESIWTKM 169
>gi|95928412|ref|ZP_01311160.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
gi|95135683|gb|EAT17334.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
Length = 374
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 132/281 (46%), Gaps = 16/281 (5%)
Query: 142 LAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKD 201
LA L++ FAVDLE + S+ CL+Q + ++D L + P L+ V D
Sbjct: 16 LAKDLETCAVFAVDLEADSMHSYQEKVCLLQFTYHDTTVLLDPLAAG-DLAP-LKPVLAD 73
Query: 202 PTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKE 261
+ +K+ H AD DI L RDF I + +FDT AS+ L E+ L +L + V +K
Sbjct: 74 SSIRKIFHAADYDIRCLARDFDIEIRGLFDTMIASQFLGEEKVGLADVLGKYFDVTLDKR 133
Query: 262 YQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYD 321
+Q ADW RPL EM YA EDT +L + I++ P E E R
Sbjct: 134 FQRADWSKRPLSPEMCHYAAEDTRHLEKLVAILE------PALKEKDRLWWVEEEFR--- 184
Query: 322 VCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 380
L E+ + ++GAG + + LA++ L EWR+ A+ D V+ N
Sbjct: 185 ----LLEQAKFRVHDGPAFLRIKGAGTMPPRALAILECLLEWREKEAQRRDCPAYKVVGN 240
Query: 381 RTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKN 421
+ L+ A+ +PTT L+ L + +RY VL I+
Sbjct: 241 KPLLSAARHMPTTMEALKDLEEFPARLADRYGRAVLKQIET 281
>gi|301060312|ref|ZP_07201175.1| putative ribonuclease D [delta proteobacterium NaphS2]
gi|300445508|gb|EFK09410.1| putative ribonuclease D [delta proteobacterium NaphS2]
Length = 381
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 138/296 (46%), Gaps = 21/296 (7%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
VE + L + L+ AVDLE + + CL+Q ST +++ +VD L ++ +
Sbjct: 11 VESGEALTSIVGILQKETAIAVDLEADSMFHYQEKVCLLQFSTPSKNILVDPLAVK-DLS 69
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
P L +FK K+ HGAD DI L RDF I + +FDT A+R L L L LL
Sbjct: 70 P-LAPIFKSFGICKIFHGADYDIRSLYRDFKIEVNALFDTQIAARFLGLTDIGLASLLQG 128
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK---IKLSSMPKESENSD 309
+ K+YQ DW RPLP ML+YA DT +L+ + ++ +K +P E
Sbjct: 129 KLNITLKKKYQKKDWSQRPLPAPMLQYAVHDTCHLIPLAQNLREELVKTGRLPFVEEECQ 188
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIAR 368
T D E L N GAG L+ + LAV+ + ++RD AR
Sbjct: 189 LQTTVRSASPGD------EPLFLKFN---------GAGKLDRRSLAVLEAILQYRDRTAR 233
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 424
D V+ N ++ +AKQ P +L+ + H ++ +L ++++++
Sbjct: 234 RRDVPLFKVMGNAQVMALAKQKPVRMTELKHIKGLSHKQAKQLGEGILKSVRHALK 289
>gi|398348927|ref|ZP_10533630.1| ribonuclease III [Leptospira broomii str. 5399]
Length = 389
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 101/173 (58%), Gaps = 2/173 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
Q+ + +V+ V+ L+ L D ++D E + Y ++ CL+QIS++ ++++ D ++
Sbjct: 4 QSDYIVVDNVRSLQLALITLGQSDCISIDTESSGYYTYYSKVCLIQISSKGKNYIFDPIR 63
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
L G L +F++P K+ H A DI L+RDF N+ DT +SR+L LE+NSL
Sbjct: 64 LADVSG--LGPLFENPAILKIFHSASDDIKALKRDFSFKFVNIADTMFSSRLLDLEQNSL 121
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
YL+ H+ V +K+ Q ++W RPL L+YA DT YL I++ M+ +L+
Sbjct: 122 LYLVEHYHKVKLSKKEQKSNWEKRPLDKSQLQYAALDTVYLESIWEKMREELA 174
>gi|398343905|ref|ZP_10528608.1| ribonuclease III [Leptospira inadai serovar Lyme str. 10]
Length = 389
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 101/173 (58%), Gaps = 2/173 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
Q+ + +V+ ++ L+ L D ++D E + Y ++ CL+QIS++ ++++ D ++
Sbjct: 4 QSDYIVVDNIRSLQLALITLAQSDCISIDTESSGYYTYYSKVCLIQISSKGKNYIFDPIR 63
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
L G L +F++P K+ H A DI L+RDF N+ DT +SR+L LE+NSL
Sbjct: 64 LADVSG--LGPLFENPAILKIFHSASDDIKALKRDFSFKFVNIADTMFSSRLLDLEQNSL 121
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
YL+ H+ V +K+ Q ++W RPL L+YA DT YL I++ M+ +L+
Sbjct: 122 LYLVEHYHKVKLSKKEQKSNWEKRPLDKSQLQYAALDTVYLESIWEKMREELA 174
>gi|418720286|ref|ZP_13279484.1| 3'-5' exonuclease [Leptospira borgpetersenii str. UI 09149]
gi|418738363|ref|ZP_13294758.1| 3'-5' exonuclease [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|410743264|gb|EKQ92007.1| 3'-5' exonuclease [Leptospira borgpetersenii str. UI 09149]
gi|410745856|gb|EKQ98764.1| 3'-5' exonuclease [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|456888486|gb|EMF99469.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200701203]
Length = 388
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ +V+ ++ L+ + L D ++D E + Y ++ CL+QIS + +++++D LKL+
Sbjct: 7 YIVVDTIRSLQLVLITLSQADSISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN 66
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
G L +F+D K+ H A DI L++DFG N+ DTG +SR+L E+ SL YL
Sbjct: 67 LDG--LGNLFEDKKILKIFHSAIDDIKALKKDFGFKFHNIADTGFSSRLLDHEQYSLTYL 124
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
+ ++ + +K+ Q ++W RPL L+YA DT YL I++ MK +L+
Sbjct: 125 VDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELT 174
>gi|116329422|ref|YP_799142.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116329974|ref|YP_799692.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|116122166|gb|ABJ80209.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116123663|gb|ABJ74934.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
Length = 388
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ +V+ ++ L+ + L D ++D E + Y ++ CL+QIS + +++++D LKL+
Sbjct: 7 YIVVDTIRSLQLVLITLSQADSISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN 66
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
G L +F+D K+ H A DI L++DFG N+ DTG +SR+L E+ SL YL
Sbjct: 67 LDG--LGNLFEDKKILKIFHSAIDDIKALKKDFGFKFHNIADTGFSSRLLDHEQYSLTYL 124
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
+ ++ + +K+ Q ++W RPL L+YA DT YL I++ MK +L+
Sbjct: 125 VDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELT 174
>gi|421099052|ref|ZP_15559712.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200901122]
gi|410797786|gb|EKR99885.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200901122]
Length = 388
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ +V+ ++ L+ + L D ++D E + Y ++ CL+QIS + +++++D LKL+
Sbjct: 7 YIVVDTIRSLQLVLITLSQADSISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN 66
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
G L +F+D K+ H A DI L++DFG N+ DTG +SR+L E+ SL YL
Sbjct: 67 LDG--LGNLFEDKKILKIFHSAIDDIKALKKDFGFKFQNIADTGFSSRLLDHEQYSLTYL 124
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
+ ++ + +K+ Q ++W RPL L+YA DT YL I++ MK +L+
Sbjct: 125 VDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELT 174
>gi|359729247|ref|ZP_09267943.1| ribonuclease D [Leptospira weilii str. 2006001855]
gi|417777730|ref|ZP_12425544.1| 3'-5' exonuclease [Leptospira weilii str. 2006001853]
gi|410782027|gb|EKR66592.1| 3'-5' exonuclease [Leptospira weilii str. 2006001853]
Length = 388
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ +V+ ++ L+ + L D ++D E + Y ++ CL+QIS + +++++D LKL+
Sbjct: 7 YIVVDTIRSLQLVLITLSQADSISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN 66
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
G L +F+D K+ H A DI L++DFG N+ DTG +SR+L E+ SL YL
Sbjct: 67 LDG--LGNLFEDKKILKIFHSAIDDIKALKKDFGFKFQNIADTGFSSRLLDHEQYSLTYL 124
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
+ ++ + +K+ Q ++W RPL L+YA DT YL I++ MK +L+
Sbjct: 125 VDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELT 174
>gi|398332245|ref|ZP_10516950.1| ribonuclease III [Leptospira alexanderi serovar Manhao 3 str. L 60]
gi|456860990|gb|EMF79700.1| 3'-5' exonuclease [Leptospira weilii serovar Topaz str. LT2116]
Length = 388
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ +V+ ++ L+ + L D ++D E + Y ++ CL+QIS + +++++D LKL+
Sbjct: 7 YIVVDTIRSLQLVLITLSQADSISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN 66
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
G L +F+D K+ H A DI L++DFG N+ DTG +SR+L E+ SL YL
Sbjct: 67 LDG--LGNLFEDKKILKIFHSAIDDIKALKKDFGFKFQNIADTGFSSRLLDHEQYSLTYL 124
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
+ ++ + +K+ Q ++W RPL L+YA DT YL I++ MK +L+
Sbjct: 125 VDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELT 174
>gi|313238124|emb|CBY13222.1| unnamed protein product [Oikopleura dioica]
Length = 354
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 116/241 (48%), Gaps = 21/241 (8%)
Query: 153 AVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLR--VQVGPYLREVFKDPTKKKVMHG 210
A+D E + + CL+Q S + E ++D L + +G YL E MHG
Sbjct: 25 AIDTEADSLHRYRESLCLIQFSAKGESVLIDPLVIEDLSPLGSYLSEA------TVWMHG 78
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD D+ +R FG ++DT +R+L R L L+ + GV +K Q ADW R
Sbjct: 79 ADYDMTMFKRQFGDLPKVVYDTQIGARLLGARRFGLGDLVSLYFGVELSKSSQKADWGKR 138
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PL +M+ YA D HYLL + D++ KL + + Y+ + C +
Sbjct: 139 PLSPKMIEYALNDVHYLLEMGDLIVTKLKDLGR------------YEWFLESCTAARRRV 186
Query: 331 LLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
L ++S + +QG+G L+ + LA + L WRD AR+ D + V+PNR L+E +
Sbjct: 187 LDRDDSKEETWRIQGSGKLDRRGLAFLKELWTWRDSEARSWDRPSFMVVPNRQLLEWSVD 246
Query: 390 L 390
L
Sbjct: 247 L 247
>gi|421095097|ref|ZP_15555810.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200801926]
gi|410361807|gb|EKP12847.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200801926]
Length = 439
Score = 105 bits (263), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ +V+ ++ L+ + L D ++D E + Y ++ CL+QIS + +++++D LKL+
Sbjct: 58 YIVVDTIRSLQLVLITLSQADSISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN 117
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
G L +F+D K+ H A DI L++DFG N+ DTG +SR+L E+ SL YL
Sbjct: 118 LDG--LGNLFEDKKILKIFHSAIDDIKALKKDFGFKFHNIADTGFSSRLLDHEQYSLTYL 175
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
+ ++ + +K+ Q ++W RPL L+YA DT YL I++ MK +L+
Sbjct: 176 VDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELT 225
>gi|359684501|ref|ZP_09254502.1| ribonuclease D [Leptospira santarosai str. 2000030832]
gi|410449393|ref|ZP_11303448.1| 3'-5' exonuclease [Leptospira sp. Fiocruz LV3954]
gi|410016618|gb|EKO78695.1| 3'-5' exonuclease [Leptospira sp. Fiocruz LV3954]
Length = 388
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ +V+ ++ L+ + L D +VD E + Y ++ CL+QIS + +++++D LKLR
Sbjct: 7 YIVVDTIRSLQLVLINLGQADSLSVDTESSGYYTYFSKVCLIQISAKGKNYILDPLKLRN 66
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
G L +F++ K+ H A DI L++DFG N+ DTG +SR+L E+ SL YL
Sbjct: 67 LDG--LGTLFENKKILKIFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYL 124
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
+ ++ + +K+ Q ++W RPL L+YA DT YL I++ MK
Sbjct: 125 VDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMK 170
>gi|408418343|ref|YP_006759757.1| ribonuclease D Rnd [Desulfobacula toluolica Tol2]
gi|405105556|emb|CCK79053.1| Rnd: ribonuclease D [Desulfobacula toluolica Tol2]
Length = 377
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 139/273 (50%), Gaps = 17/273 (6%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+K +E +L + L AVDLE + F CL+QI++ E F+VD +++
Sbjct: 3 YKFIESESELNHVCDDLLKEKIIAVDLEADSMHCFKEKICLIQIASAKEAFLVDPFEIK- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
++ +L V ++ KV HG+D DI L RD+ + + N+FDT A R L ++ L L
Sbjct: 62 KISSFL-NVLENNDVMKVFHGSDFDIRSLDRDYHVQVNNLFDTEIACRFLGIKERGLAAL 120
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
L V+A+K++Q DW RPL M+ Y+ D YL+ + DI+ +L + +
Sbjct: 121 LKRNFDVDADKKFQKVDWAQRPLKQAMIEYSVGDVAYLVELQDIIHGRLKEKKRLAWA-- 178
Query: 310 TPLTEVYKRSYDVCRQL-YEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIA 367
K +++ Q+ YE + +++ +GAG ++ + LAV+ L + R IA
Sbjct: 179 -------KEEFEIQAQVRYE----NNHTFPLFKKFKGAGKMDNRSLAVLENLLQMRLSIA 227
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ D+ V+ N +L+ +A + P T ++ ++
Sbjct: 228 QKKDQPLFKVISNPSLMTMACEKPLTIDRILKI 260
>gi|45659084|ref|YP_003170.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|294828464|ref|NP_714272.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
gi|386075688|ref|YP_005990008.1| ribonuclease D [Leptospira interrogans serovar Lai str. IPAV]
gi|417761741|ref|ZP_12409746.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000624]
gi|417771399|ref|ZP_12419294.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Pomona]
gi|417772941|ref|ZP_12420827.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000621]
gi|417785994|ref|ZP_12433691.1| 3'-5' exonuclease [Leptospira interrogans str. C10069]
gi|418667421|ref|ZP_13228833.1| 3'-5' exonuclease [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|418671067|ref|ZP_13232422.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000623]
gi|418683302|ref|ZP_13244507.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418692063|ref|ZP_13253144.1| 3'-5' exonuclease [Leptospira interrogans str. FPW2026]
gi|418702415|ref|ZP_13263323.1| 3'-5' exonuclease [Leptospira interrogans serovar Bataviae str.
L1111]
gi|418704115|ref|ZP_13264995.1| 3'-5' exonuclease [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|418710116|ref|ZP_13270898.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|418728912|ref|ZP_13287481.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12758]
gi|421083604|ref|ZP_15544478.1| 3'-5' exonuclease [Leptospira santarosai str. HAI1594]
gi|421101603|ref|ZP_15562215.1| 3'-5' exonuclease [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421115524|ref|ZP_15575929.1| 3'-5' exonuclease [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|421126273|ref|ZP_15586510.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421135637|ref|ZP_15595758.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|45602330|gb|AAS71807.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|293386317|gb|AAN51290.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
gi|353459480|gb|AER04025.1| ribonuclease D [Leptospira interrogans serovar Lai str. IPAV]
gi|400324875|gb|EJO77159.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400358126|gb|EJP14242.1| 3'-5' exonuclease [Leptospira interrogans str. FPW2026]
gi|409942474|gb|EKN88086.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000624]
gi|409946596|gb|EKN96605.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Pomona]
gi|409950823|gb|EKO05345.1| 3'-5' exonuclease [Leptospira interrogans str. C10069]
gi|410012826|gb|EKO70912.1| 3'-5' exonuclease [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410020301|gb|EKO87105.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410368775|gb|EKP24151.1| 3'-5' exonuclease [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410433965|gb|EKP78302.1| 3'-5' exonuclease [Leptospira santarosai str. HAI1594]
gi|410436223|gb|EKP85342.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|410577276|gb|EKQ40272.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000621]
gi|410581930|gb|EKQ49736.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000623]
gi|410757024|gb|EKR18642.1| 3'-5' exonuclease [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|410758584|gb|EKR24813.1| 3'-5' exonuclease [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410766337|gb|EKR37024.1| 3'-5' exonuclease [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|410769574|gb|EKR44805.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|410776315|gb|EKR56294.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12758]
gi|455667095|gb|EMF32456.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str. Fox
32256]
gi|455792168|gb|EMF43937.1| 3'-5' exonuclease [Leptospira interrogans serovar Lora str. TE
1992]
gi|456823784|gb|EMF72221.1| 3'-5' exonuclease [Leptospira interrogans serovar Canicola str.
LT1962]
gi|456966971|gb|EMG08438.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. LT2186]
Length = 388
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 2/166 (1%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ +V+ + L+ + L D +VD E + Y ++ CL+QIS + +++++D LKL
Sbjct: 7 YIVVDTARSLQLVLINLSQADSISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-- 64
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
Q L +F+D K+ H A DI L++DFG N+ DTG +SR+L E+ SL YL
Sbjct: 65 QNLESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYL 124
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
+ ++ + +K+ Q ++W RPL L+YA DT YL I++ MK
Sbjct: 125 VDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMK 170
>gi|421121879|ref|ZP_15582169.1| 3'-5' exonuclease [Leptospira interrogans str. Brem 329]
gi|410345216|gb|EKO96335.1| 3'-5' exonuclease [Leptospira interrogans str. Brem 329]
Length = 388
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 2/166 (1%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ +V+ + L+ + L D +VD E + Y ++ CL+QIS + +++++D LKL
Sbjct: 7 YIVVDTARSLQLVLINLSQADSISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-- 64
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
Q L +F+D K+ H A DI L++DFG N+ DTG +SR+L E+ SL YL
Sbjct: 65 QNLESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYL 124
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
+ ++ + +K+ Q ++W RPL L+YA DT YL I++ MK
Sbjct: 125 VDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMK 170
>gi|418752957|ref|ZP_13309213.1| 3'-5' exonuclease [Leptospira santarosai str. MOR084]
gi|422002805|ref|ZP_16350040.1| ribonuclease D [Leptospira santarosai serovar Shermani str. LT 821]
gi|409966640|gb|EKO34481.1| 3'-5' exonuclease [Leptospira santarosai str. MOR084]
gi|417258550|gb|EKT87937.1| ribonuclease D [Leptospira santarosai serovar Shermani str. LT 821]
Length = 388
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ +V+ ++ L+ + L D +VD E + Y ++ CL+QIS + +++++D LKLR
Sbjct: 7 YIVVDTIRSLQLVLINLGQADSLSVDTESSGYYTYFSKVCLIQISAKGKNYILDPLKLRN 66
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
G L +F++ K+ H A DI L++DFG N+ DTG +SR+L E+ SL YL
Sbjct: 67 LDG--LGTLFENKKILKIFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYL 124
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
+ ++ + +K+ Q ++W RPL L+YA DT YL I+ MK
Sbjct: 125 VDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWGKMK 170
>gi|418746085|ref|ZP_13302416.1| 3'-5' exonuclease [Leptospira santarosai str. CBC379]
gi|410792916|gb|EKR90840.1| 3'-5' exonuclease [Leptospira santarosai str. CBC379]
Length = 388
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ +V+ ++ L+ + L D +VD E + Y ++ CL+QIS + +++++D LKLR
Sbjct: 7 YIVVDTIRSLQLVLINLGQADSLSVDTESSGYYTYFSKVCLIQISAKGKNYILDPLKLRN 66
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
G L +F++ K+ H A DI L++DFG N+ DTG +SR+L E+ SL YL
Sbjct: 67 LDG--LGTLFENKKILKIFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYL 124
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
+ ++ + +K+ Q ++W RPL L+YA DT YL I+ MK
Sbjct: 125 VDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWGKMK 170
>gi|456983567|gb|EMG19831.1| 3'-5' exonuclease [Leptospira interrogans serovar Copenhageni str.
LT2050]
Length = 388
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 2/166 (1%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ +V+ + L+ + L D +VD E + Y ++ CL+QIS + +++++D LKL
Sbjct: 7 YIVVDTARSLQLVLINLSQADSISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-- 64
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
Q L +F+D K+ H A DI L++DFG N+ DTG +SR+L E+ SL YL
Sbjct: 65 QNLESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYL 124
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
+ ++ + +K+ Q ++W RPL L+YA DT YL I++ MK
Sbjct: 125 VDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMK 170
>gi|385792618|ref|YP_005825594.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676764|gb|AEB27634.1| Ribonuclease D [Francisella cf. novicida Fx1]
Length = 364
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 129/255 (50%), Gaps = 22/255 (8%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
K L + LK+ + AVD E R++ CL+Q++T E F++DTLK ++ L+
Sbjct: 7 KQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK-DLEFKK-LK 64
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE-RNSLEYLLHHFCG 255
E+F+D K++H A DI ++R F + N+FDT A+ L + ++SL+ LL
Sbjct: 65 EIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKTLLKEILD 124
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD---TPL 312
+ KE Q +DWR RPL L YA +D YL+ + + ++ +L +SE D L
Sbjct: 125 IEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLV----KSEYQDFFEQEL 180
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
EV K ++ EN + I +Q Q+ A++ + +WR+ IA+ +
Sbjct: 181 IEVQKTQFNSI----------ENIHAKIGNIQKFDEKTQRNAIL--IAQWRETIAQEKNI 228
Query: 373 STGYVLPNRTLIEIA 387
++ N+TL IA
Sbjct: 229 PVRFIFNNKTLYTIA 243
>gi|418715523|ref|ZP_13275644.1| 3'-5' exonuclease [Leptospira interrogans str. UI 08452]
gi|418727334|ref|ZP_13285929.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12621]
gi|409959575|gb|EKO23345.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12621]
gi|410788424|gb|EKR82142.1| 3'-5' exonuclease [Leptospira interrogans str. UI 08452]
Length = 388
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 2/166 (1%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ +V+ + L+ + L D +VD E + Y ++ CL+QIS + +++++D LKL
Sbjct: 7 YIVVDTARSLQLVLINLSQADSISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-- 64
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
Q L +F+D K+ H A DI L++DFG N+ DTG +SR+L E+ SL YL
Sbjct: 65 QNLENLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYL 124
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
+ ++ + +K+ Q ++W RPL L+YA DT YL I++ MK
Sbjct: 125 VDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMK 170
>gi|134302344|ref|YP_001122313.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421752196|ref|ZP_16189228.1| ribonuclease D [Francisella tularensis subsp. tularensis AS_713]
gi|421754061|ref|ZP_16191044.1| ribonuclease D [Francisella tularensis subsp. tularensis 831]
gi|421757785|ref|ZP_16194655.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700103]
gi|421759628|ref|ZP_16196457.1| ribonuclease D [Francisella tularensis subsp. tularensis 70102010]
gi|424674949|ref|ZP_18111861.1| ribonuclease D [Francisella tularensis subsp. tularensis 70001275]
gi|134050121|gb|ABO47192.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
WY96-3418]
gi|409085560|gb|EKM85698.1| ribonuclease D [Francisella tularensis subsp. tularensis 831]
gi|409085718|gb|EKM85850.1| ribonuclease D [Francisella tularensis subsp. tularensis AS_713]
gi|409090457|gb|EKM90474.1| ribonuclease D [Francisella tularensis subsp. tularensis 70102010]
gi|409091730|gb|EKM91720.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700103]
gi|417434204|gb|EKT89163.1| ribonuclease D [Francisella tularensis subsp. tularensis 70001275]
Length = 364
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 131/260 (50%), Gaps = 22/260 (8%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
+V K L + LK+ + AVD E R++ CL+Q++T E F++DTLK ++
Sbjct: 2 IVNTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK-DLEF 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE-RNSLEYLL 250
L+E+F+D K++H A DI ++R F + N+FDT A+ L + ++SL+ LL
Sbjct: 61 KK-LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKTLL 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD- 309
+ KE Q +DWR RPL L YA +D YL+ + + ++ +L+ +SE D
Sbjct: 120 KEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLA----KSEYQDF 175
Query: 310 --TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
L EV K ++ EN + I +Q Q+ A++ + +WR+ IA
Sbjct: 176 FEQELIEVQKTQFNSI----------ENIHAKIGNIQKFDEKTQRNAIL--IAQWRETIA 223
Query: 368 RADDESTGYVLPNRTLIEIA 387
+ + ++ N+ L IA
Sbjct: 224 QEKNIPVRFIFNNKILYTIA 243
>gi|398340441|ref|ZP_10525144.1| ribonuclease III [Leptospira kirschneri serovar Bim str. 1051]
gi|418693755|ref|ZP_13254804.1| 3'-5' exonuclease [Leptospira kirschneri str. H1]
gi|421106132|ref|ZP_15566708.1| 3'-5' exonuclease [Leptospira kirschneri str. H2]
gi|409958332|gb|EKO17224.1| 3'-5' exonuclease [Leptospira kirschneri str. H1]
gi|410008854|gb|EKO62514.1| 3'-5' exonuclease [Leptospira kirschneri str. H2]
Length = 388
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 94/166 (56%), Gaps = 2/166 (1%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ +V+ + L+ + L D +VD E + Y ++ CL+QIS + +++++D LKL
Sbjct: 7 YIVVDTTRSLQLVLINLSQADSISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-- 64
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
Q L +F+D K+ H A DI L++DFG N+ DTG +SR+L E+ SL YL
Sbjct: 65 QNLESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYL 124
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
+ ++ + +K+ Q ++W RPL L+YA DT YL I+ MK
Sbjct: 125 VDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWAKMK 170
>gi|418679035|ref|ZP_13240300.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|418685440|ref|ZP_13246616.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|418740873|ref|ZP_13297249.1| 3'-5' exonuclease [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|421089663|ref|ZP_15550467.1| 3'-5' exonuclease [Leptospira kirschneri str. 200802841]
gi|421131604|ref|ZP_15591784.1| 3'-5' exonuclease [Leptospira kirschneri str. 2008720114]
gi|400320450|gb|EJO68319.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|410001487|gb|EKO52083.1| 3'-5' exonuclease [Leptospira kirschneri str. 200802841]
gi|410356978|gb|EKP04263.1| 3'-5' exonuclease [Leptospira kirschneri str. 2008720114]
gi|410740048|gb|EKQ84770.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|410751468|gb|EKR08445.1| 3'-5' exonuclease [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 388
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 94/166 (56%), Gaps = 2/166 (1%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ +V+ + L+ + L D +VD E + Y ++ CL+QIS + +++++D LKL
Sbjct: 7 YIVVDTTRSLQLVLINLSQADSISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-- 64
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
Q L +F+D K+ H A DI L++DFG N+ DTG +SR+L E+ SL YL
Sbjct: 65 QNLESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYL 124
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
+ ++ + +K+ Q ++W RPL L+YA DT YL I+ MK
Sbjct: 125 VDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWAKMK 170
>gi|359689033|ref|ZP_09259034.1| ribonuclease D [Leptospira licerasiae serovar Varillal str.
MMD0835]
Length = 372
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 87/149 (58%), Gaps = 2/149 (1%)
Query: 146 LKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKK 205
L D ++D E + Y ++ CL+QIS++ ++++ D ++L G L +F++P
Sbjct: 6 LSQSDCLSIDTESSGYYTYYSKVCLIQISSKGKNYIFDPIRLDDLNG--LGPLFENPNIL 63
Query: 206 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNA 265
K+ H A DI L+RDFG N+ DT +SR+L LE+NSL YL+ H+ V +K+ Q +
Sbjct: 64 KIFHSASDDIKALKRDFGFKFINIADTMFSSRLLDLEQNSLLYLVEHYHKVKLSKKEQKS 123
Query: 266 DWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
+W RPL L+YA DT YL I+ M
Sbjct: 124 NWEKRPLEKSQLQYAALDTVYLESIWTKM 152
>gi|89256742|ref|YP_514104.1| ribonuclease D [Francisella tularensis subsp. holarctica LVS]
gi|115315142|ref|YP_763865.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
gi|254368041|ref|ZP_04984061.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
gi|422939063|ref|YP_007012210.1| ribonuclease D [Francisella tularensis subsp. holarctica FSC200]
gi|89144573|emb|CAJ79888.1| Ribonuclease D [Francisella tularensis subsp. holarctica LVS]
gi|115130041|gb|ABI83228.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
gi|134253851|gb|EBA52945.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
gi|407294214|gb|AFT93120.1| ribonuclease D [Francisella tularensis subsp. holarctica FSC200]
Length = 364
Score = 103 bits (256), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 129/255 (50%), Gaps = 22/255 (8%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
K L + LK+ + AVD E R++ CL+Q++T E F++DTLK ++ L+
Sbjct: 7 KQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK-DLEFKK-LK 64
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE-RNSLEYLLHHFCG 255
E+F+D K++H A DI ++R F + N+FDT A+ L + ++SL+ LL
Sbjct: 65 EIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKTLLKEILD 124
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD---TPL 312
+ KE Q +DWR RPL L YA +D YL+ + + ++ +L+ +SE D L
Sbjct: 125 IEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLA----KSEYQDFFEQEL 180
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
EV K ++ EN + I +Q Q+ A++ + +WR+ IA+ +
Sbjct: 181 IEVQKTQFNSI----------ENIHAKIGNIQKFDEKTQRNAIL--IAQWRETIAQEKNI 228
Query: 373 STGYVLPNRTLIEIA 387
++ N+ L IA
Sbjct: 229 PVRFIFNNKILYTIA 243
>gi|187931952|ref|YP_001891937.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
gi|187712861|gb|ACD31158.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
Length = 364
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 129/255 (50%), Gaps = 22/255 (8%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
K L + LK+ + AVD E R++ CL+Q++T E F++DTLK ++ L+
Sbjct: 7 KQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK-DLEFKK-LK 64
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE-RNSLEYLLHHFCG 255
E+F+D K++H A DI ++R F + N+FDT A+ L + ++SL+ LL
Sbjct: 65 EIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKTLLKEILD 124
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD---TPL 312
+ KE Q +DWR RPL L YA +D YL+ + + ++ +L+ +SE D L
Sbjct: 125 IEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLA----KSEYQDFFEQEL 180
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
EV K ++ EN + I +Q Q+ A++ + +WR+ IA+ +
Sbjct: 181 IEVQKTQFNSI----------ENIHAKIGNIQKFDEKTQRNAIL--IAQWRETIAQEKNI 228
Query: 373 STGYVLPNRTLIEIA 387
++ N+ L IA
Sbjct: 229 PVRFIFNNKILYTIA 243
>gi|254374109|ref|ZP_04989591.1| ribonuclease D [Francisella novicida GA99-3548]
gi|151571829|gb|EDN37483.1| ribonuclease D [Francisella novicida GA99-3548]
Length = 364
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 129/255 (50%), Gaps = 22/255 (8%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
K L + LK+ + AVD E R++ CL+Q++T E F++DTLK ++ L+
Sbjct: 7 KQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK-DLEFKK-LK 64
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE-RNSLEYLLHHFCG 255
E+F+D K++H A DI ++R F + N+FDT A+ L + ++SL+ LL
Sbjct: 65 EIFEDKDIIKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKTLLKEILD 124
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD---TPL 312
+ KE Q +DWR RPL L YA +D YL+ + + ++ +L+ +SE D L
Sbjct: 125 IEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLA----KSEYQDFFEQEL 180
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
EV K ++ EN + I +Q Q+ A++ + +WR+ IA+ +
Sbjct: 181 IEVQKTQFNSI----------ENIHAKIGNIQKFDEKTQRNAIL--IAQWRETIAQEKNI 228
Query: 373 STGYVLPNRTLIEIA 387
++ N+ L IA
Sbjct: 229 PVRFIFNNKILYTIA 243
>gi|254372648|ref|ZP_04988137.1| ribonuclease III [Francisella tularensis subsp. novicida GA99-3549]
gi|151570375|gb|EDN36029.1| ribonuclease III [Francisella novicida GA99-3549]
Length = 364
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 129/255 (50%), Gaps = 22/255 (8%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
K L + LK+ + AVD E R++ CL+Q++T E F++DTLK ++ L+
Sbjct: 7 KQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK-DLEFKK-LK 64
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE-RNSLEYLLHHFCG 255
E+F+D K++H A DI ++R F + N+FDT A+ L + ++SL+ LL
Sbjct: 65 EIFEDKDIIKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKTLLKEILD 124
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD---TPL 312
+ KE Q +DWR RPL L YA +D YL+ + + ++ +L+ +SE D L
Sbjct: 125 IEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLA----KSEYQDFFEQEL 180
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
EV K ++ EN + I +Q Q+ A++ + +WR+ IA+ +
Sbjct: 181 IEVQKTQFNSI----------ENIHAKIGNIQKFDEKTQRNAIL--IAQWRETIAQEKNI 228
Query: 373 STGYVLPNRTLIEIA 387
++ N+ L IA
Sbjct: 229 PVRFIFNNKILYTIA 243
>gi|156502902|ref|YP_001428967.1| ribonuclease D [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|290953633|ref|ZP_06558254.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1]
gi|423051113|ref|YP_007009547.1| ribonuclease D [Francisella tularensis subsp. holarctica F92]
gi|156253505|gb|ABU62011.1| ribonuclease D [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|421951835|gb|AFX71084.1| ribonuclease D [Francisella tularensis subsp. holarctica F92]
Length = 363
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 129/255 (50%), Gaps = 22/255 (8%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
K L + LK+ + AVD E R++ CL+Q++T E F++DTLK ++ L+
Sbjct: 7 KQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK-DLEFKK-LK 64
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE-RNSLEYLLHHFCG 255
E+F+D K++H A DI ++R F + N+FDT A+ L + ++SL+ LL
Sbjct: 65 EIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKTLLKEILD 124
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD---TPL 312
+ KE Q +DWR RPL L YA +D YL+ + + ++ +L+ +SE D L
Sbjct: 125 IEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLA----KSEYQDFFEQEL 180
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
EV K ++ EN + I +Q Q+ A++ + +WR+ IA+ +
Sbjct: 181 IEVQKTQFNSI----------ENIHAKIGNIQKFDEKTQRNAIL--IAQWRETIAQEKNI 228
Query: 373 STGYVLPNRTLIEIA 387
++ N+ L IA
Sbjct: 229 PVRFIFNNKILYTIA 243
>gi|398334995|ref|ZP_10519700.1| ribonuclease III [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 366
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 91/154 (59%), Gaps = 2/154 (1%)
Query: 146 LKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKK 205
+ D ++D E + Y ++ CL+QIS + +++++D LKL+ G L +F+D
Sbjct: 1 MSQADSISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQNLDG--LGTLFEDKKIL 58
Query: 206 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNA 265
K+ H A DI L++DFG N+ DTG +SR+L E+ SL YL+ ++ + +K+ Q +
Sbjct: 59 KIFHSAIDDIKALKKDFGFKFVNIADTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKS 118
Query: 266 DWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
+W RPL L+YA DT YL I++ MK +L+
Sbjct: 119 NWEKRPLEKSQLQYAALDTVYLETIWEKMKEELT 152
>gi|417767687|ref|ZP_12415623.1| 3'-5' exonuclease [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|400349705|gb|EJP01993.1| 3'-5' exonuclease [Leptospira interrogans serovar Bulgarica str.
Mallika]
Length = 388
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 94/166 (56%), Gaps = 2/166 (1%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ +V+ + L+ + L D +VD E + Y ++ CL+QIS + +++++D LKL
Sbjct: 7 YIVVDTARSLQLVLINLSQADSISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKL-- 64
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
Q L +F+D K+ H A DI L++DFG N+ DTG +SR+L E+ SL YL
Sbjct: 65 QNLESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYL 124
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
+ ++ + +K+ Q ++W RPL +YA DT YL I++ MK
Sbjct: 125 VDYYHKIKLSKKEQKSNWEKRPLEKSQFQYAALDTVYLETIWEKMK 170
>gi|56707887|ref|YP_169783.1| ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
gi|110670358|ref|YP_666915.1| ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
gi|254370381|ref|ZP_04986386.1| hypothetical protein FTBG_00144 [Francisella tularensis subsp.
tularensis FSC033]
gi|254874700|ref|ZP_05247410.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
gi|379717133|ref|YP_005305469.1| Ribonuclease D [Francisella tularensis subsp. tularensis TIGB03]
gi|379725737|ref|YP_005317923.1| ribonuclease D [Francisella tularensis subsp. tularensis TI0902]
gi|385794536|ref|YP_005830942.1| Ribonuclease D [Francisella tularensis subsp. tularensis NE061598]
gi|421755410|ref|ZP_16192356.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700075]
gi|56604379|emb|CAG45409.1| Ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
gi|110320691|emb|CAL08792.1| Ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
gi|151568624|gb|EDN34278.1| hypothetical protein FTBG_00144 [Francisella tularensis subsp.
tularensis FSC033]
gi|254840699|gb|EET19135.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
gi|282159071|gb|ADA78462.1| Ribonuclease D [Francisella tularensis subsp. tularensis NE061598]
gi|377827186|gb|AFB80434.1| Ribonuclease D [Francisella tularensis subsp. tularensis TI0902]
gi|377828810|gb|AFB78889.1| Ribonuclease D [Francisella tularensis subsp. tularensis TIGB03]
gi|409088212|gb|EKM88289.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700075]
Length = 364
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 129/255 (50%), Gaps = 22/255 (8%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
K L + LK+ + AVD E R++ CL+Q++T E F++DTLK ++ L+
Sbjct: 7 KQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK-DLEFKK-LK 64
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE-RNSLEYLLHHFCG 255
E+F+D K++H A DI ++R F + N+FDT A+ L + ++SL+ LL
Sbjct: 65 EIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKTLLKEILD 124
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD---TPL 312
+ KE Q +DWR RPL L YA +D YL+ + + ++ +L+ +SE D L
Sbjct: 125 IEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLA----KSEYQDFFEQEL 180
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
EV K ++ EN + I +Q Q+ A++ + +WR+ IA+ +
Sbjct: 181 IEVQKTQFNSI----------ENIHAKIGNIQKFDEKTQRNAIL--IAQWRETIAQEKNI 228
Query: 373 STGYVLPNRTLIEIA 387
++ N+ L IA
Sbjct: 229 PVRFIFNNKILYTIA 243
>gi|57340046|gb|AAW50010.1| hypothetical protein FTT0776 [synthetic construct]
Length = 399
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 129/255 (50%), Gaps = 22/255 (8%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
K L + LK+ + AVD E R++ CL+Q++T E F++DTLK ++ L+
Sbjct: 33 KQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK-DLEFKK-LK 90
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE-RNSLEYLLHHFCG 255
E+F+D K++H A DI ++R F + N+FDT A+ L + ++SL+ LL
Sbjct: 91 EIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKTLLKEILD 150
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD---TPL 312
+ KE Q +DWR RPL L YA +D YL+ + + ++ +L+ +SE D L
Sbjct: 151 IEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLA----KSEYQDFFEQEL 206
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
EV K ++ EN + I +Q Q+ A++ + +WR+ IA+ +
Sbjct: 207 IEVQKTQFNSI----------ENIHAKIGNIQKFDEKTQRNAIL--IAQWRETIAQEKNI 254
Query: 373 STGYVLPNRTLIEIA 387
++ N+ L IA
Sbjct: 255 PVRFIFNNKILYTIA 269
>gi|146173426|ref|XP_001018834.2| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|146144882|gb|EAR98589.2| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 634
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 21/261 (8%)
Query: 146 LKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKK 205
L++ D+ N YRSF G C ++IST +D+++D L LR ++ L+E+F D
Sbjct: 108 LRNAGVICWDVHFNTYRSFYGFVCFLEISTIDQDYIIDCLSLRNEIHR-LKEIFLDKQIV 166
Query: 206 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNAN----KE 261
K+ I WL RDFGI N+ ++ S LK E N L ++ + CG N K
Sbjct: 167 KITLDLQEKINWLYRDFGI--LNIVNSIDLSLYLK-ELN-LPSIISYLCGTLLNYPFQKI 222
Query: 262 YQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRS-Y 320
QN D+R RPL + Y R +++ L I I+ + S+ K + L E++ +S
Sbjct: 223 LQNFDYRKRPLSLNEINYLRAFSYFPLRILSILTNNILSIEK------SKLEELFNKSQL 276
Query: 321 DVCRQLYEKE-LLSEN---SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
C L + E LL EN + ++ + N QQ + + +WR A+ +DES Y
Sbjct: 277 ASCLSLKQLENLLQENLIEKHFEMFCI-DRNYNEQQQYFLRKILKWRIQRAKLEDESVEY 335
Query: 377 VLPNRTLIEIAKQLPTTAAKL 397
+ P + + PT++ ++
Sbjct: 336 IFPACIIEKFISVYPTSSQQV 356
>gi|254369642|ref|ZP_04985652.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122601|gb|EDO66730.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
holarctica FSC022]
Length = 364
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 22/255 (8%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
K L + LK+ + AVD E R++ CL+Q++T E F++DTLK ++ L+
Sbjct: 7 KQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK-DLEFKK-LK 64
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE-RNSLEYLLHHFCG 255
E+F+D K++H A DI ++R F + N+FDT A+ L + ++SL+ LL
Sbjct: 65 EIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKTLLKEILD 124
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD---TPL 312
+ KE Q +DWR RPL L Y+ +D YL+ + + ++ +L+ +SE D L
Sbjct: 125 IEIEKESQFSDWRNRPLTQNQLNYSIKDVEYLIQLKEYLQQQLA----KSEYQDFFEQEL 180
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
EV K ++ EN + I +Q Q+ A++ + +WR+ IA+ +
Sbjct: 181 IEVQKTQFNSI----------ENIHAKIGNIQKFDEKTQRNAIL--IAQWRETIAQEKNI 228
Query: 373 STGYVLPNRTLIEIA 387
++ N+ L IA
Sbjct: 229 PVRFIFNNKILYTIA 243
>gi|405355820|ref|ZP_11024932.1| Ribonuclease D [Chondromyces apiculatus DSM 436]
gi|397091092|gb|EJJ21919.1| Ribonuclease D [Myxococcus sp. (contaminant ex DSM 436)]
Length = 378
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 137/299 (45%), Gaps = 25/299 (8%)
Query: 145 KLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTK 204
+L+ E AVDLE + +F C +Q++T E F++DTL+ V V L + DP +
Sbjct: 12 QLEQAREIAVDLEADSMHAFRARLCFLQLATDAEVFLLDTLQPGV-VPDMLAPLMADPAR 70
Query: 205 KKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQN 264
K H A D+ +L + G+ + +FDT +A+ +L + L L GV KE+Q
Sbjct: 71 TKFFHAAQGDLQFLA-EVGVRVQGLFDTHRAATLLGWPKVGLADLARERLGVELPKEHQQ 129
Query: 265 ADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCR 324
+D+ +RPLP M Y D YL +L +++ L EV D R
Sbjct: 130 SDFSIRPLPPGMREYIANDVRYL--------CELGRQVRDACREADILEEVL---LDCVR 178
Query: 325 QLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC--------EWRDVIARADDESTGY 376
E + + L +GLN QL + + EW A ++ G
Sbjct: 179 MCDEAAARPDVGADYKPKLPRSGLNPTQLTLAHAIAQVLHRKRLEW----AEKENVPMGR 234
Query: 377 VLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQK 435
+L N L +IA +LPTT +L R+ + S++ + +L++++ ++ + E+ ++
Sbjct: 235 MLSNMALGDIAAKLPTTQKELARMAGVRGSFVRTHGDELLALVREQLEKSRRGELAPER 293
>gi|118497275|ref|YP_898325.1| ribonuclease D [Francisella novicida U112]
gi|194323578|ref|ZP_03057355.1| ribonuclease D [Francisella novicida FTE]
gi|208779068|ref|ZP_03246414.1| ribonuclease D [Francisella novicida FTG]
gi|118423181|gb|ABK89571.1| ribonuclease D [Francisella novicida U112]
gi|194322433|gb|EDX19914.1| ribonuclease D [Francisella tularensis subsp. novicida FTE]
gi|208744868|gb|EDZ91166.1| ribonuclease D [Francisella novicida FTG]
Length = 364
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 22/255 (8%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
K L + LK+ + AVD E R++ CL+Q++T E F++DTL+ ++ L+
Sbjct: 7 KQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLE-DLEFKK-LK 64
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE-RNSLEYLLHHFCG 255
E+F+D K++H A DI ++R F + N+FDT A+ L + ++SL+ LL
Sbjct: 65 EIFEDKDIIKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKTLLKEILD 124
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD---TPL 312
+ KE Q +DWR RPL L YA +D YL+ + + ++ +L+ +SE D L
Sbjct: 125 IEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLA----KSEYQDFFEQEL 180
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
EV K ++ EN + I +Q Q+ A++ + +WR+ IA+ +
Sbjct: 181 IEVQKTQFNSI----------ENIHAKIGNIQKFDEKTQRNAIL--IAQWRETIAQEKNI 228
Query: 373 STGYVLPNRTLIEIA 387
++ N+ L IA
Sbjct: 229 PVRFIFNNKILYTIA 243
>gi|456877521|gb|EMF92536.1| 3'-5' exonuclease [Leptospira santarosai str. ST188]
Length = 366
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 89/149 (59%), Gaps = 2/149 (1%)
Query: 150 DEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMH 209
D +VD E + Y ++ CL+QIS + +++++D LKLR G L +F++ K+ H
Sbjct: 5 DSLSVDTESSGYYTYFSKVCLIQISAKGKNYILDPLKLRNLDG--LGTLFENKKILKIFH 62
Query: 210 GADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRV 269
A DI L++DFG N+ DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W
Sbjct: 63 SAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEK 122
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKL 298
RPL L+YA DT YL I++ MK +L
Sbjct: 123 RPLEKSQLQYAALDTVYLETIWEKMKDEL 151
>gi|108760811|ref|YP_634116.1| ribonuclease D [Myxococcus xanthus DK 1622]
gi|108464691|gb|ABF89876.1| putative ribonuclease D [Myxococcus xanthus DK 1622]
Length = 389
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 137/294 (46%), Gaps = 17/294 (5%)
Query: 146 LKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKK 205
L++ E AVDLE + +F C +Q++T + F++DTL+ V G L + DP +
Sbjct: 24 LEAAREIAVDLEADSMHAFRARLCFLQLATDDQVFLLDTLQPGVVPG-MLAPLMADPART 82
Query: 206 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNA 265
K H A D+ +L + G+ + +FDT +A+ +L + L L GV KE+Q +
Sbjct: 83 KFFHAAQGDLQFLA-EVGVRVQGLFDTHRAATLLGWPKVGLADLARERLGVELPKEHQQS 141
Query: 266 DWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQ 325
D+ +RPLP M Y D YL +L +++ L EV +C +
Sbjct: 142 DFSIRPLPPGMREYIANDVRYL--------CELGRQVRDACREADILEEVLLDCVRLCDE 193
Query: 326 LYEKELLSENSYLHIYGLQGAGLNAQQL----AVVAGLCEWRDVIARADDESTGYVLPNR 381
+ + + L AGLN Q+ A+ L R A D+ G +L N
Sbjct: 194 AAARPDVGADFK---PKLPRAGLNPTQMTLAHAIAHALHRKRLEWAEKDNVPMGRMLSNM 250
Query: 382 TLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQK 435
L +IA +LPT +L R+ + S+I + +L++++ ++ + E+ ++
Sbjct: 251 ALGDIAVKLPTNPKELARMAGVRGSFIRSHGEELLAVVRELLEKSRRGELAPER 304
>gi|323453102|gb|EGB08974.1| hypothetical protein AURANDRAFT_63530 [Aureococcus anophagefferens]
Length = 549
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 127/298 (42%), Gaps = 52/298 (17%)
Query: 147 KSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKK 206
+ VD F VDLE + S+ + CL+QIST D+VVD L LR ++ L F DP +K
Sbjct: 224 EGVDVFGVDLEAHAEHSYESIACLVQISTADVDYVVDALALRFELRA-LAPAFADPNIRK 282
Query: 207 VMHGADR-DIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL--LHHFCGV------- 256
V H DI LQRDFGI++ N+FDT +A+R + L L+ GV
Sbjct: 283 VFHACQGVDIPRLQRDFGIFVVNVFDTQEAARCAARVLGAPLGLVALYASAGVISTARRD 342
Query: 257 ---NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP-- 311
+ + YQN DWR RPL L YA D +L+ + + +L + P
Sbjct: 343 ELESLKRAYQNCDWRSRPLSPAQLEYAVCDARHLVDLEAYLNRELRHFDPLRDYGLPPGG 402
Query: 312 --------------LTEVYKRSYDVCRQLYEKELLSENSYLHIY------GLQGAGLNAQ 351
D+ Y K S+ + L ++ LQ A +
Sbjct: 403 AARDAPRPPPPPGPREAAGDEEADMVASAYCK---SQRATLCLWRAPRSPRLQAA--RDK 457
Query: 352 QLAVVA--------GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 401
Q A +A L WRD AR DE V P+ L AK+ PTT LR LL
Sbjct: 458 QFAALARDAAPRFSALVAWRDAEARRLDEGPHAVCPSAALAAFAKRWPTT---LRGLL 512
>gi|389581646|ref|ZP_10171673.1| ribonuclease D [Desulfobacter postgatei 2ac9]
gi|389403281|gb|EIM65503.1| ribonuclease D [Desulfobacter postgatei 2ac9]
Length = 404
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 132/267 (49%), Gaps = 17/267 (6%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++ + KDL ++ KL+ + VDLE + F CL+QI+ + +++D +
Sbjct: 31 YQFITTDKDLAQVCLKLEPCEIIGVDLEADSMHCFSEKICLIQIAGPNQAWLLDPFLIN- 89
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
P+ R + ++P KV HG+D D+ L R+ + + N+FDT A R L ++ L L
Sbjct: 90 DFLPFSR-ILENPEIIKVFHGSDFDVRSLDRELSVEIENLFDTEIACRFLNIKERGLGAL 148
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES-ENS 308
L F ++ +K+YQ DW RPL +EM+ Y+ D L+ ++D++K +L + + +
Sbjct: 149 LKSFFDIDVDKKYQKVDWSKRPLKEEMIAYSVGDVATLVDLHDLLKERLEKIGRLAWAEE 208
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIA 367
+ L K + R L+ + +GAG L+ + LAV+ L E R A
Sbjct: 209 EFELQARVKYESNHSRPLFRR-------------FKGAGKLDNRSLAVLEHLLEVRLSEA 255
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTA 394
D ++ N++++ + + PT+
Sbjct: 256 EKKDLPPFKIMSNQSILTMVQHRPTSV 282
>gi|410941522|ref|ZP_11373317.1| 3'-5' exonuclease [Leptospira noguchii str. 2006001870]
gi|410783321|gb|EKR72317.1| 3'-5' exonuclease [Leptospira noguchii str. 2006001870]
Length = 372
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
Query: 146 LKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKK 205
+ + +VD E + Y ++ CL+QIS + +++++D LKL+ G L +F+D
Sbjct: 1 MSQANSISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQNLEG--LGNLFEDKKIL 58
Query: 206 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNA 265
KV H A DI L++DFG N+ DTG +SR+L E+ SL YL+ ++ + +K+ Q +
Sbjct: 59 KVFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKS 118
Query: 266 DWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295
+W RPL L+YA DT YL I++ M+
Sbjct: 119 NWEKRPLEKSQLQYAALDTVYLETIWEKMR 148
>gi|421110867|ref|ZP_15571356.1| 3'-5' exonuclease [Leptospira santarosai str. JET]
gi|410803772|gb|EKS09901.1| 3'-5' exonuclease [Leptospira santarosai str. JET]
Length = 366
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 88/149 (59%), Gaps = 2/149 (1%)
Query: 150 DEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMH 209
D +VD E + Y ++ CL+QIS + +++++D LKLR G L +F++ K+ H
Sbjct: 5 DSLSVDTESSGYYTYFSKVCLIQISAKGKNYILDPLKLRNLDG--LGTLFENKKILKIFH 62
Query: 210 GADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRV 269
A DI L++DFG N+ DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W
Sbjct: 63 SAIDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEK 122
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKL 298
RPL L+YA DT YL I+ MK +L
Sbjct: 123 RPLEKSQLQYAALDTVYLETIWGKMKDEL 151
>gi|338532921|ref|YP_004666255.1| putative ribonuclease D [Myxococcus fulvus HW-1]
gi|337259017|gb|AEI65177.1| putative ribonuclease D [Myxococcus fulvus HW-1]
Length = 378
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 17/295 (5%)
Query: 145 KLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTK 204
KL+ E AVDLE + +F C +Q++T E F++DTL+ V G L + DP +
Sbjct: 12 KLEQAREIAVDLEADSMHAFRARLCFLQLATDDEVFLLDTLQPGVVPG-MLAPLMADPAR 70
Query: 205 KKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQN 264
K H A D+ +L + G+ + +FDT +A+ +L + L + GV KE+Q
Sbjct: 71 TKFFHAAQGDLQFLA-EVGVRVQGLFDTHRAATLLGWPKVGLADIARERLGVELPKEHQQ 129
Query: 265 ADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCR 324
+D+ +RPLP M Y D YL +L +++ L EV +C
Sbjct: 130 SDFSIRPLPPGMREYIANDVRYL--------CELGRQVRDACREADILEEVLLDCARLCD 181
Query: 325 QLYEKELLSENSYLHIYGLQGAGLNAQQL----AVVAGLCEWRDVIARADDESTGYVLPN 380
+ + + + + L AGLN QL A+ L R A ++ G +L N
Sbjct: 182 EAAARPDVGAD---YKPKLPRAGLNPVQLTLAHAIAQALHRKRLEWAEKENVPMGRMLSN 238
Query: 381 RTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQK 435
+ +IA +LPT +L R+ + S+I + +L++++ ++ + E+ ++
Sbjct: 239 MAIGDIAVKLPTNPKELARMAGVRGSFIRAHGEDLLAVVRELLEKSRRGELAPER 293
>gi|350552229|ref|ZP_08921434.1| ribonuclease D [Thiorhodospira sibirica ATCC 700588]
gi|349794882|gb|EGZ48690.1| ribonuclease D [Thiorhodospira sibirica ATCC 700588]
Length = 391
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 134/295 (45%), Gaps = 14/295 (4%)
Query: 131 KLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQ 190
+L++ + L+ L A L+ FA+D E + +++ CL+Q++T + +D L +
Sbjct: 5 ELIDSAEALEALCAHLQQQRWFALDTEFVREKTYYPKLCLIQVATAQQVACIDPLHIS-D 63
Query: 191 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYL 249
+ P+L +P KV+H A +D+ G +FDT A +L ++ L
Sbjct: 64 LSPFL-ACLHNPAITKVLHAASQDLELFYCLDGRVPAPIFDTQLAGALLGYGDQAGYAKL 122
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ GV +K+ DW RPL LRYA +D YL +Y +M +LS +
Sbjct: 123 VSAMLGVELDKDMTRTDWSQRPLSAAQLRYAEDDVRYLAQLYPLMHTQLS---------E 173
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
T E + + E ++ I G Q L QLAV+A L WR+ A
Sbjct: 174 TRRLEWLASDFAALSEARHYESQPAKAWKRIKGHQT--LRGPQLAVLASLASWRESEAMR 231
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 424
+ +++ + L+++A+Q P TA KL R+ + RY G +L+ I Q
Sbjct: 232 ANRPRRWIIADDPLLDMARQQPNTAEKLARIRGVNEGSLRRYEGALLNAIAQGKQ 286
>gi|346310745|ref|ZP_08852758.1| ribonuclease D [Collinsella tanakaei YIT 12063]
gi|345897238|gb|EGX67165.1| ribonuclease D [Collinsella tanakaei YIT 12063]
Length = 377
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 127/271 (46%), Gaps = 23/271 (8%)
Query: 134 EEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGP 193
EE+ E AA+ D AVD E + R++ CL+Q++T E V+D + + + P
Sbjct: 7 EELSAFCERAARF---DAIAVDTEFLRERTYHPRLCLVQVATPDECVVIDVIAID-NLAP 62
Query: 194 YLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLH 251
L + +D KV H +D+ L G +FDT A+ L ER Y ++H
Sbjct: 63 -LAILMRDEGTVKVFHACSQDMEVLNYTLGALPAPIFDTQVAAAFLG-ERMQASYNGMVH 120
Query: 252 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD-- 309
FCGV K DW RPL E + YA +D YL+ YD++ +L + S D
Sbjct: 121 AFCGVTLPKSESLTDWSRRPLTPEQIEYALDDVRYLIKAYDVIMERLDKSGRASWVLDEI 180
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
PLT+ + Y V R++ K + NS L +QLAV L WR+ A
Sbjct: 181 KPLTD--RSHYVVDRRVAFKRVKRVNS-----------LTRRQLAVARELAAWREARAEY 227
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ +++ + LI ++K+ P AA LRR+
Sbjct: 228 SNIPRKWLMSDEVLIALSKRPPHDAASLRRV 258
>gi|404498237|ref|YP_006722343.1| ribonuclease D [Geobacter metallireducens GS-15]
gi|418065969|ref|ZP_12703338.1| 3'-5' exonuclease [Geobacter metallireducens RCH3]
gi|78195834|gb|ABB33601.1| ribonuclease D, putative [Geobacter metallireducens GS-15]
gi|373561476|gb|EHP87711.1| 3'-5' exonuclease [Geobacter metallireducens RCH3]
Length = 382
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 129/276 (46%), Gaps = 20/276 (7%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
++ LA +L A DLE + + CL+Q + +VD L + + P L V
Sbjct: 17 VRRLADRLSREPYVACDLEADSMHHYQEKVCLIQFTVPGLAAIVDPLAV-ADLAP-LAPV 74
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNA 258
F +P+ +KV HGAD DI L RDFGI + N+FDT A + L L +L GV
Sbjct: 75 FANPSIRKVFHGADYDIRSLHRDFGIEVNNLFDTMIACQFLGEREFGLAAVLRKRFGVEL 134
Query: 259 NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDTPLTE 314
+K+YQ ADW RPL M+ YA +DT L+ + ++ +L + E E +
Sbjct: 135 DKQYQRADWSRRPLTAGMIEYAAKDTTLLIELCGRLEAELREKGRIGWVEEECALLARVR 194
Query: 315 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 374
V +RS E +L G + + ++ LAV+ + +RD A+ D
Sbjct: 195 VAQRSD------------GEPMFLRFKG--ASRMASRSLAVLEEILCFRDRRAQQMDVPP 240
Query: 375 GYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 410
VL T+ E+A++ P + A+L + +ER
Sbjct: 241 FKVLGTETVRELAEKKPRSLAELTGITGITERVVER 276
>gi|440793720|gb|ELR14896.1| 3'5' exonuclease domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 317
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 17/267 (6%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEF-AVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLR 188
+ L+ E + ++A + + ++ A+D E N + CL+Q++ V DT+ L
Sbjct: 4 YTLITEPHQVADVAERFVAKAQWLAIDTESNILFVYQPRVCLIQMNVEGVLLVFDTMAL- 62
Query: 189 VQVGPY----LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
+Q P LR +D + HGA D+ +RDF I L +FDT +A+++ L
Sbjct: 63 MQADPLALEPLRPYLEDGQRLIFAHGAANDVSTFKRDFDISLNGLFDTQRAAQLAGLAHT 122
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
+ ++ V+ +K+Y + +W +RP+ E LRYA ED YL + +++ ++ + E
Sbjct: 123 NYGAVVESLLSVSLSKDYTHYNWGLRPIELEPLRYALEDVVYLPQVGHMLRARVQELGVE 182
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWR 363
E + + S+ R+L + L ++ ++G G L+ QL V+ L WR
Sbjct: 183 EELAAVNRMLMAMPSHP--RRLDDLAL--------VHSIRGTGNLDPVQLGVMGALFLWR 232
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQL 390
D AR D G V+ N L++IA+ L
Sbjct: 233 DAKAREFDRPCGSVISNERLVKIARAL 259
>gi|374585390|ref|ZP_09658482.1| 3'-5' exonuclease [Leptonema illini DSM 21528]
gi|373874251|gb|EHQ06245.1| 3'-5' exonuclease [Leptonema illini DSM 21528]
Length = 377
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 125/252 (49%), Gaps = 20/252 (7%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTL-KLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + Y ++ CL+QIST ++ F++DTL KL +Q L +F K+ H
Sbjct: 26 LAVDTESSGYYTYYSELCLIQISTDSQHFIIDTLAKLELQ---RLAHIFAGQNIPKIFHA 82
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
A D+ +R +G N+FDT A+R L+ E SL L+ + GV K+ Q ++W R
Sbjct: 83 AASDMGEFRRQYGWSFANVFDTHMAARYLRHEACSLLALVQRYVGVELEKKEQKSNWMKR 142
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PL L YA DT +Y+Y IM+ M +E E + + E ++ D + + E
Sbjct: 143 PLTKSQLDYAHLDT---VYLYQIMQ----QMKEELERAG--VMEEFQAEMDWMCEGGDDE 193
Query: 331 LLSE-----NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 385
L E N+++ + G L+A A + R+ A+ ++ + ++ NR L
Sbjct: 194 LEIEKPDNPNAWMRVNG--AIRLSASARGRFAAVYALREERAKKENIAAFRLMTNRNLFR 251
Query: 386 IAKQLPTTAAKL 397
+ ++LP T +L
Sbjct: 252 LVEELPETTDEL 263
>gi|196232584|ref|ZP_03131436.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
gi|196223346|gb|EDY17864.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
Length = 352
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 126/261 (48%), Gaps = 18/261 (6%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L++ + L+ + L +D E + + CL+QIS D ++D L
Sbjct: 4 LIDTAEALQAVPPLLAPHPRIPIDTEADSLHCYFEKLCLIQISVPGHDLLIDPL-----A 58
Query: 192 GPYLREVFKD-PTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLL 250
G L+ +F+ K+ ++HGAD D+ L+R +FDT A+R+ +E SL L+
Sbjct: 59 GISLQPLFEAFAGKELIIHGADYDLRLLRRVGFTVTAPVFDTMIAARLCGIEEFSLAALI 118
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
+ V K Q A+W RPL +M YA +DTHYLL I I++ +L+ + +
Sbjct: 119 KRYFDVALTKASQKANWARRPLSPQMADYAVKDTHYLLEIAGILEAELTRLDR------- 171
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA-GLNAQQLAVVAGLCEWRDVIARA 369
E +++S D + + + E ++ + G+ L + A++ L WR+ A+A
Sbjct: 172 --MEWFRQSCD--KAVAASAITKERDPEEVWRITGSKDLRGRASAILRALWHWREAEAQA 227
Query: 370 DDESTGYVLPNRTLIEIAKQL 390
D T ++L + LIE A +L
Sbjct: 228 VDRPTFHILHSEQLIEAAAKL 248
>gi|219118334|ref|XP_002179944.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408997|gb|EEC48930.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 700
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 112/218 (51%), Gaps = 22/218 (10%)
Query: 101 LDNLSVLDFVDKDIGDVE--AVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAV--DL 156
+D++ + +KD+ VE AV S+ ++ + LV+ ++ ++L A+ D+
Sbjct: 203 IDSMDFRIWANKDLSGVEPPAVWDSSMRKSEWTLVDTPSKMRACISELSQSPPLALAFDV 262
Query: 157 EHNQYRSFLGLTCLMQIST-RTEDFVVDTLKLRV--QVGPYLREVFKDPTKKKVMHG-AD 212
E + LTCL+Q+ST +V+D L V +VG L +F DP KV H
Sbjct: 263 ESYNKSKYTQLTCLLQLSTDHGMAYVIDPLAPGVFEEVGG-LAPIFADPDIVKVGHSIGG 321
Query: 213 RDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGV-------NANKEYQNA 265
D+ L RDFGI++ N FDT +A++VL LE + L + H+ G+ + EYQ
Sbjct: 322 LDVRSLHRDFGIFVINAFDTYEAAKVLCLESHGLAAVCEHY-GMKYTDLYKSLKNEYQTC 380
Query: 266 DWRVRPLPDEMLRYAREDTHYL-----LYIYDIMKIKL 298
DWR RPL M++Y R D H+L L I D+ K L
Sbjct: 381 DWRARPLTGPMIQYGRFDVHFLIELRMLMIRDLTKTYL 418
>gi|308234516|ref|ZP_07665253.1| ribonuclease D [Atopobium vaginae DSM 15829]
gi|328944110|ref|ZP_08241575.1| ribonuclease D [Atopobium vaginae DSM 15829]
gi|327492079|gb|EGF23853.1| ribonuclease D [Atopobium vaginae DSM 15829]
Length = 376
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 133/275 (48%), Gaps = 26/275 (9%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
+E + L + D A+D E + ++F CL+Q++TR+E +VD L +
Sbjct: 3 IETYEQLASFCERATKSDVLAIDTEFMREKTFYPKLCLIQLATRSEIVLVDPLSIPDLTD 62
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN---MFDTGQASRVLKLERNSLEY- 248
L ++F D K+ H +D L+ + I+ C +FDT A+ L R + Y
Sbjct: 63 --LCKLFLDKKITKIFHACSQD---LELIYDIFSCLPKPVFDTQVAAAFLG-HRFQIGYG 116
Query: 249 -LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
L+ C V+ K DW RPL +E L YA +D YL +YD + +L KE E
Sbjct: 117 PLVDALCHVHLPKAESLTDWTRRPLAEEQLEYAADDVRYLPRMYDTLLHEL----KEKER 172
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLS--ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
L E++ +VC E ++ + +YLH+ + + L +QLA+ + WRDV
Sbjct: 173 YAWFLEEMH----EVCN---EHHVIKKPQEAYLHMRRI--SSLTRKQLAIAREIGIWRDV 223
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
IA D +V+P+ +I++ K +P T +L R+
Sbjct: 224 IASHKDIPRKWVIPDEIVIDLCKSVPKTMERLERI 258
>gi|337755515|ref|YP_004648026.1| ribonuclease D [Francisella sp. TX077308]
gi|336447120|gb|AEI36426.1| Ribonuclease D [Francisella sp. TX077308]
Length = 364
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 130/261 (49%), Gaps = 16/261 (6%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
+++ K L+++ LK+ E AVD E R++ CL+QI+T E F++DTL+ +
Sbjct: 2 IIDTNKKLEDVVKALKNAKEIAVDTEFYWMRTYYPELCLVQIATENEIFLIDTLE-DLDF 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLL 250
L+++F+D +K++H A DI ++R F + N+FDT A+ L + SL+ LL
Sbjct: 61 SK-LKDIFEDTNIQKIIHSATNDIPIIKRFFDCEVNNIFDTQLAASFLGTQSQISLKALL 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
+ KE Q +DWR RPL + YA +D +L+ I ++ KL+ + +
Sbjct: 120 KDILDIEMEKESQFSDWRKRPLSQKQFDYALKDVEHLIEIKYHLESKLNQTDYKQYFHE- 178
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
L E+ K ++ ++ K I +Q Q+ A++ +WR+ IA+
Sbjct: 179 ELLEIQKTEFNTIDNIHNK----------IGNIQKFNEKTQKNAILVA--QWRESIAQQK 226
Query: 371 DESTGYVLPNRTLIEIAKQLP 391
+ ++ N+ L IA + P
Sbjct: 227 NIPVRFIFDNKILYAIAHKNP 247
>gi|387824213|ref|YP_005823684.1| Ribonuclease D [Francisella cf. novicida 3523]
gi|328675812|gb|AEB28487.1| Ribonuclease D [Francisella cf. novicida 3523]
Length = 364
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 132/257 (51%), Gaps = 18/257 (7%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
K L ++ + + + AVD E R++ CL+QI+T E F++DTLK + L+
Sbjct: 7 KQLNDVIEIISNTSQIAVDTEFYWMRTYYPELCLVQIATENEIFLIDTLK-DLDFSK-LK 64
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE-RNSLEYLLHHFCG 255
++F++ +K++H A DI ++R F + N+FDT A+ L + ++SL+ LL
Sbjct: 65 DIFENKDIQKIIHSATNDIPIIKRFFNCEVNNIFDTQLAAAFLGFQTQSSLKTLLKEILD 124
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN-SDTPLTE 314
+ KE Q +DWR RPL + L YA +D YL+ + + ++ +L + E + + L E
Sbjct: 125 IEMEKESQFSDWRNRPLTQKQLNYAIKDVEYLIQLKEYLQQQL--IKSEYQGFFEQELIE 182
Query: 315 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 374
+ K ++ EN + I +Q Q+ A++ + +WR++IA+ +
Sbjct: 183 IQKTQFNSI----------ENIHTKIGNIQKFDEKTQKNAIL--IAQWREMIAQEKNIPV 230
Query: 375 GYVLPNRTLIEIAKQLP 391
++ N+ L +A + P
Sbjct: 231 RFIFNNKVLYALAHKNP 247
>gi|88800842|ref|ZP_01116397.1| ribonuclease D [Reinekea blandensis MED297]
gi|88776415|gb|EAR07635.1| ribonuclease D [Reinekea sp. MED297]
Length = 380
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 139/295 (47%), Gaps = 17/295 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
F+ ++ L ++A + + A+D E + SF L+Q+ + +++D L++
Sbjct: 5 FQWIDNNAALAQVADEWAAASVIALDTEFVRTDSFYAHLGLIQVGIEDQVWLIDPLQIN- 63
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL-KLERNSLEY 248
P +R V DP KV+H D L G+ L N+FDT A+ L + S
Sbjct: 64 DWAPLVR-VLSDPAIVKVLHALSEDAEVLAHHLGVELQNVFDTQIAAGFLGHPVQMSYAR 122
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ C V KE +DW RPL DE YA D +L +Y +L + +N
Sbjct: 123 LVEAICDVELPKEATRSDWLQRPLADEQCFYAAADVLWLYRVYQHCAAQL-----KEQNR 177
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIA 367
+ E D R + + SY L+GA L ++L V+ LCEWR+ +A
Sbjct: 178 YAWVAE------DSQRMVSNNRPVPPQSYYQ--KLRGAWKLKGERLLVLQLLCEWRENLA 229
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
RA + + G +L ++ LI +A+++PT+ + L++ + I Y ++++I+ +
Sbjct: 230 RATNSNRGRILQDKDLITLAEKMPTSRSMLQKQVNIPSRKIRLYGDELIAMIERA 284
>gi|118395219|ref|XP_001029962.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89284244|gb|EAR82299.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 1087
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 79/141 (56%), Gaps = 10/141 (7%)
Query: 165 LGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGI 224
L C +Q+ST + +FV+D L L V +L+ +F+ P KV HG + D+ L++D
Sbjct: 912 LSFICTLQLSTLSSNFVIDILNLSKSVSVHLKSIFESPKFVKVFHGGETDLKLLKKDLNF 971
Query: 225 YLCNMFDTGQASRVLKLERN------SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLR 278
L N+FDT +A L++N SL L + N +K+YQ +DWR+RPLP ML
Sbjct: 972 NLVNIFDTAKAY----LKQNKGAGSVSLSSLSQQYLNYNVDKQYQTSDWRIRPLPKPMLN 1027
Query: 279 YAREDTHYLLYIYDIMKIKLS 299
YA D+ L ++ +MK +S
Sbjct: 1028 YAMYDSFITLILFFVMKSTIS 1048
>gi|442323525|ref|YP_007363546.1| putative ribonuclease D [Myxococcus stipitatus DSM 14675]
gi|441491167|gb|AGC47862.1| putative ribonuclease D [Myxococcus stipitatus DSM 14675]
Length = 389
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 136/291 (46%), Gaps = 17/291 (5%)
Query: 145 KLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTK 204
KL+ E AVDLE + +F C +Q++T ++ F++DTL+ V+ L + +P +
Sbjct: 23 KLEQARELAVDLEADSMHAFRARLCFLQVATDSDVFLLDTLQPGVEAR-LLAPLMGEPGR 81
Query: 205 KKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQN 264
K H A D+ +L + G+ + +FDT +A+ +L + L + GV KE+Q
Sbjct: 82 TKYFHAAQGDLQFLA-EAGVRVRGLFDTHRAATLLGWPKVGLADIAREKLGVELPKEHQQ 140
Query: 265 ADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCR 324
+D+ +RPLP M Y D YL +L +E+ L EV +C
Sbjct: 141 SDFSLRPLPPGMRDYIANDVRYL--------CELGRQVREATREAGILEEVELDCERLCD 192
Query: 325 QLYEKELLSENSYLHIYGLQGAGLNAQQL----AVVAGLCEWRDVIARADDESTGYVLPN 380
+ + + + L +GL+ Q+ A+ L + R A ++ G +L N
Sbjct: 193 EAVARPDVGADFKPK---LPRSGLSPAQMTLANAIAHALHKKRLEWAEKENVPMGRMLSN 249
Query: 381 RTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEV 431
+ +IA +LP++ L R + S++ + VL+I++ + A N E+
Sbjct: 250 MAIADIATRLPSSPRDLARAAGVRGSFVRTHGDEVLAILREQQEKARNGEL 300
>gi|406573982|ref|ZP_11049722.1| putative ribonuclease D [Janibacter hoylei PVAS-1]
gi|404556583|gb|EKA62045.1| putative ribonuclease D [Janibacter hoylei PVAS-1]
Length = 555
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 102/208 (49%), Gaps = 17/208 (8%)
Query: 203 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 262
T + ++H A +D+ L D G+ +FDT A+R+L L R L ++ H+ G++ KE+
Sbjct: 103 TGEWILHAATQDLPCLG-DLGLRPRQIFDTELAARLLGLPRVGLAAVIEHYLGISLAKEH 161
Query: 263 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 322
DW RPLP+ LRYA D L + ++M I L++ K +E ++ ++
Sbjct: 162 SAVDWSTRPLPEPWLRYAALDVEVLTEVRNLMGIDLAAQDK---------SEWARQEFEA 212
Query: 323 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 382
L + + E+ + GL + LA V L RD IAR D S G V+P+
Sbjct: 213 L--LSWRPAVKEDPWRRTSGLHKI-RQPRVLATVRELWYERDRIARDRDTSPGRVIPDTA 269
Query: 383 LIEIAKQLPTTAAKLRRLLKSKHSYIER 410
L+EIA+ P+ L R H I+R
Sbjct: 270 LVEIAQANPSGPGDLPR----GHRAIQR 293
>gi|395215204|ref|ZP_10400856.1| 3'-5' exonuclease [Pontibacter sp. BAB1700]
gi|394455924|gb|EJF10318.1| 3'-5' exonuclease [Pontibacter sp. BAB1700]
Length = 395
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 137/268 (51%), Gaps = 20/268 (7%)
Query: 124 SLEQ--TPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLT-CLMQIST-RTED 179
SLE+ +LV DL + +L+ E AVDLE +Q R G CL+QI+ +
Sbjct: 5 SLEEDGVAIELVASDADLHQAIQQLEQCGELAVDLEFDQNRFTYGFNLCLIQIADGKGNC 64
Query: 180 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 239
F++D + + P+ ++ +DPT K++H ++ DI+ L + G + + DT A+++L
Sbjct: 65 FIIDPFYID-DLTPFF-QLMEDPTITKIIHHSNNDILLLDK-MGCSVKGIVDTDVAAKIL 121
Query: 240 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
ER+SL +L +K Q+++W RPL ++ LRYA D YL KIK +
Sbjct: 122 NYERSSLATVLKEEFDKEIDKSQQSSNWNKRPLTEDQLRYAAIDVIYL------HKIK-A 174
Query: 300 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 359
+ +E E D ++ + QL E SEN +L + LN Q ++ GL
Sbjct: 175 KLLQEIEKLDR--MHWFEEENHLLEQLKYTE--SENPHLRLK--HSYRLNYYQQYLLKGL 228
Query: 360 CEWRDVIARADDESTGYVLPNRTLIEIA 387
+R+ +AR ++ +V+PN L+E+A
Sbjct: 229 YAFRENMARQFNKPAHFVIPNDALVELA 256
>gi|357404370|ref|YP_004916294.1| ribonuclease D [Methylomicrobium alcaliphilum 20Z]
gi|351717035|emb|CCE22700.1| Ribonuclease D [Methylomicrobium alcaliphilum 20Z]
Length = 386
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 137/292 (46%), Gaps = 28/292 (9%)
Query: 128 TPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKL 187
T + ++ + L EL ++ A+D E + +++ CL+QI+T VD + L
Sbjct: 2 TAIQYIDTPQKLDELCRQIAKESWLALDTEFLREKTYYPKFCLLQIATPEWVACVDPIAL 61
Query: 188 RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SL 246
+G L EV +P KV H +D+ + G +FDT A+ +L + N
Sbjct: 62 D-DLGA-LFEVIYNPKIIKVFHSCRQDLEIFYQLTGKIPQPIFDTQIAAPLLGYQENPGY 119
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK--- 303
L+ F +N +K + DW VRPL L+YA +D YL IY M KL+ + +
Sbjct: 120 AMLVSSFLNINLSKAHTRTDWTVRPLSQAQLQYAADDVIYLCQIYQTMLKKLAELNRLDW 179
Query: 304 -ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEW 362
ES+ + E+Y E+ +N++L I G L +QL++V L EW
Sbjct: 180 LESDFAMLNDPELY-------------EISPKNAWLKIRG--KNKLTGKQLSIVQTLAEW 224
Query: 363 RDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL------LKSKHSYI 408
R+ A+ +D ++L + + E+AKQ P T ++ ++ + SKH I
Sbjct: 225 REQTAQKEDRPRNWLLRDDMMFELAKQQPGTVEEMLKVHNINERMVSKHGKI 276
>gi|167628093|ref|YP_001678593.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25017]
gi|167598094|gb|ABZ88092.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25017]
Length = 366
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 125/256 (48%), Gaps = 16/256 (6%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
K L + LKS + AVD E R++ CL+QI+T E F++DTL+ + L+
Sbjct: 7 KQLNNVIEILKSTSQIAVDTEFYWMRTYYPELCLVQIATENEIFLIDTLE-DLDFSK-LK 64
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHFCG 255
++F+D +K++H A DI ++R F + N+FDT A+ L + SL+ LL
Sbjct: 65 DIFEDTNIQKIIHSATNDIPIIKRFFDCEVNNIFDTQLAASFLGTQSQISLKALLKDILD 124
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 315
+ KE Q +DWR RPL + YA +D +L+ I ++ KL+ + + L E+
Sbjct: 125 IEMEKESQFSDWRKRPLSQKQFDYALKDVKHLIEIKYHLESKLNQTDYKQYFYE-ELLEI 183
Query: 316 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 375
K ++ ++ K I +Q Q+ A++ +WR+ +A+ +
Sbjct: 184 QKTEFNTVENIHNK----------IGNIQKFSEKTQKNAILVA--QWRESMAQQKNIPVR 231
Query: 376 YVLPNRTLIEIAKQLP 391
++ N+ L IA + P
Sbjct: 232 FIFDNKILYAIAHKNP 247
>gi|257784443|ref|YP_003179660.1| ribonuclease D [Atopobium parvulum DSM 20469]
gi|257472950|gb|ACV51069.1| ribonuclease D [Atopobium parvulum DSM 20469]
Length = 379
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 127/270 (47%), Gaps = 24/270 (8%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
++L + K+ AVD E + +++ CL+Q+ST +E +D L + + P L+
Sbjct: 10 EELFAFCERAKTSHILAVDTEFLREKTYFPKLCLVQVSTGSEIAAIDPLLID-DLTP-LK 67
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFC 254
E+ ++P K++H +D+ L +FDT A+ L + R + Y L+ +F
Sbjct: 68 ELLENPEIVKILHACSQDLEVLLEKMDCACAPVFDTQVAAAFLGM-RQQVSYAGLVENFA 126
Query: 255 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES----ENSDT 310
V K DW RPL E L YA +D YL IY+ M KL + + S E
Sbjct: 127 NVKLAKAESLTDWSKRPLDKEQLVYAEDDVRYLPAIYNQMVEKLIKLDRLSWLKPEMDQH 186
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ Y+R +YL + + L +QLA+ +C WR+ IA
Sbjct: 187 TNIDQYRRD-------------PYQAYLRLK--RSGSLTRRQLAIAREVCAWREEIAAKR 231
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
D +VL + +IEI +++PTT+ +LR++
Sbjct: 232 DVPRKWVLSDELIIEICRRVPTTSDRLRKI 261
>gi|39995551|ref|NP_951502.1| ribonuclease D [Geobacter sulfurreducens PCA]
gi|39982314|gb|AAR33775.1| ribonuclease D, putative [Geobacter sulfurreducens PCA]
Length = 381
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 132/292 (45%), Gaps = 13/292 (4%)
Query: 131 KLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQ 190
+++ V ++ LA +L S A DLE + + CL+Q + +VD L
Sbjct: 9 EIITTVDGVRRLADRLGSEPIVACDLEADSMHHYQEKVCLIQFAVPGYAAIVDPLAA-PD 67
Query: 191 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLL 250
+ P L +F + +KV HGAD DI L RDFGI + N+FDT A ++L L L
Sbjct: 68 ISP-LAPLFANAAIRKVFHGADYDIRSLHRDFGIEVNNLFDTMIACQLLGEREFGLAAQL 126
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
GV +K+YQ ADW RPL M+ YA +DT L+ +Y + +L + +
Sbjct: 127 RKRFGVELDKQYQRADWSRRPLTVGMIEYAVKDTTLLIELYRQLVAELEEKGRRGWVEE- 185
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
++ ++ E E +L G + ++ + LAV+ L +RD AR
Sbjct: 186 --------ECELLSRVRVAERGDEPFFLRFKG--ASRMDGRTLAVLEELLLFRDGRARQF 235
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
D VL T+ E+A++ P +L+ + RY +L ++
Sbjct: 236 DVPPFKVLGTDTVRELAERRPRLPEELQGITGLTDKVAARYGEGILRAVERG 287
>gi|254877166|ref|ZP_05249876.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25015]
gi|254843187|gb|EET21601.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25015]
Length = 364
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 125/256 (48%), Gaps = 16/256 (6%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
K L + LKS + AVD E R++ CL+QI+T E F++DTL+ + L+
Sbjct: 7 KQLNNVIEILKSTSQIAVDTEFYWMRTYYPELCLVQIATENEIFLIDTLE-DLDFSK-LK 64
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHFCG 255
++F+D +K++H A DI ++R F + N+FDT A+ L + SL+ LL
Sbjct: 65 DIFEDTNIQKIIHSATNDIPIIKRFFDCEVNNIFDTQLAASFLGTQSQISLKALLKDILD 124
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 315
+ KE Q +DWR RPL + YA +D +L+ I ++ KL+ + + L ++
Sbjct: 125 IEMEKESQFSDWRKRPLSQKQFDYALKDVEHLIEIKYHLESKLNQTDYKQYFYE-ELLDI 183
Query: 316 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 375
K ++ ++ K I +Q Q+ A++ +WR+ +A+ +
Sbjct: 184 QKTEFNTVENIHNK----------IGNIQKFSEKTQKNAILVA--QWRESMAQQKNIPVR 231
Query: 376 YVLPNRTLIEIAKQLP 391
++ N+ L IA + P
Sbjct: 232 FIFDNKILYAIAHKNP 247
>gi|84496254|ref|ZP_00995108.1| putative ribonuclease D [Janibacter sp. HTCC2649]
gi|84383022|gb|EAP98903.1| putative ribonuclease D [Janibacter sp. HTCC2649]
Length = 428
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 25/220 (11%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
++H A +D+ L + G+ +FDT +R+L L R L ++ H+ G+ KE+ D
Sbjct: 120 ILHAATQDLACLA-EVGLRPVQLFDTELGARLLGLPRVGLAAVVEHYLGLALAKEHSAVD 178
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP+ LRYA D L + ++M + L+ K + RQ
Sbjct: 179 WSTRPLPEPWLRYAALDVEVLTELRNLMGVDLARQDKS----------------EWARQE 222
Query: 327 YEKELLSENSYLHIYGLQGAGLNA----QQLAVVAGLCEWRDVIARADDESTGYVLPNRT 382
+E L E + + +GLN + +AVV L RD IAR D S G +LP+
Sbjct: 223 FEALLTWEPTERVDPWRRTSGLNTIRSRRGVAVVRELWYARDDIARDRDTSPGRILPDAG 282
Query: 383 LIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
LI IA + PT+ A L S H I RY ++ +K +
Sbjct: 283 LISIATEAPTSPAD----LPSGHRAISRYGRQWVAAVKRA 318
>gi|347755007|ref|YP_004862571.1| ribonuclease D [Candidatus Chloracidobacterium thermophilum B]
gi|347587525|gb|AEP12055.1| ribonuclease D [Candidatus Chloracidobacterium thermophilum B]
Length = 405
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 122/268 (45%), Gaps = 21/268 (7%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
+ +E + + E A+DLE + L CL+Q+ R VD RV + P L
Sbjct: 7 RAFQEFCHQAYTQTELAIDLEFQGEGRYTPLLCLVQLGLRDRCVAVD--PFRVNLTP-LA 63
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHFCG 255
+ P +K++H +DIV L+R+ ++FDT A+ L E L F
Sbjct: 64 PLLTHPGIRKIVHAGGQDIVLLRRETDAIPVSVFDTQIAAAFLGYGEATGYAALAQRFAK 123
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 315
V+ +K+ Q DW RPL E + YA D YL +YD + +L+ + +D L
Sbjct: 124 VSLSKKQQFTDWTRRPLLPEQIEYALNDVRYLFPVYDGLLEQLA----QHGRTDWVL--- 176
Query: 316 YKRSYDVCRQLYEKELLSENS---YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
D C + + + YL I L ++ ++LAV+ L +WR+ AR+ +
Sbjct: 177 -----DACADAVAQAVRVRETGQEYLKIGKL--GSMSRRELAVLRELYQWREATARSRNR 229
Query: 373 STGYVLPNRTLIEIAKQLPTTAAKLRRL 400
G +L + L +IA LP T LR++
Sbjct: 230 PVGTILHDDVLRQIAYTLPRTETALRQM 257
>gi|147781151|emb|CAN76290.1| hypothetical protein VITISV_007642 [Vitis vinifera]
Length = 782
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 69/112 (61%), Gaps = 13/112 (11%)
Query: 1 MDVSFDEFSKARGENGEGDGNEG-GFQLVYGKNKKKG-------DIVGGSAPASVKVKDR 52
D + +EF R + + + G GFQLV G+ KK G V + ++ VKD+
Sbjct: 104 FDAAAEEFRGLRLKQEQSRIDSGDGFQLVCGRKKKXGQSEMGQDSTVVAHSNVALAVKDK 163
Query: 53 K-----EKSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIH 99
+ + +VPFH+PTI +PQ+E+ I+VNN+NQPFQHVWLQ+S+D RFIH
Sbjct: 164 RTVGPAARPRVPFHIPTIPRPQDEFNILVNNSNQPFQHVWLQRSDDGLRFIH 215
>gi|383458490|ref|YP_005372479.1| putative ribonuclease D [Corallococcus coralloides DSM 2259]
gi|380734173|gb|AFE10175.1| putative ribonuclease D [Corallococcus coralloides DSM 2259]
Length = 381
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 130/291 (44%), Gaps = 19/291 (6%)
Query: 146 LKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGP-YLREVFKDPTK 204
L++ E AVDLE + +F C +Q+ T T+ F+ DTL+ V P L + +DP +
Sbjct: 16 LEAAPEVAVDLEADAMHAFRARLCFLQLGTDTDIFLFDTLQ--PGVDPRLLSPMMEDPAR 73
Query: 205 KKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQN 264
K H A D+ +L + G+ + +FDT +A +L + L L GV KE+Q
Sbjct: 74 TKYFHAAQGDLQFLA-EAGVRVRGLFDTHRAVTLLGWPKVGLADLARERLGVELPKEHQQ 132
Query: 265 ADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCR 324
+D+ +RPLP M Y D YL +L +++ L EV D R
Sbjct: 133 SDFSLRPLPPGMRDYIANDVRYL--------CELGRQVRDACREADILEEVL---LDCER 181
Query: 325 QLYEKELLSENSYLHIYGLQGAGLNAQQ----LAVVAGLCEWRDVIARADDESTGYVLPN 380
E E E + L GL+ Q A+ GL + R A D+ G +L N
Sbjct: 182 MCAEAEARPEVGAEYKPKLSRTGLSTAQYALAYAIAQGLHKLRLEWAEKDNVPMGRMLSN 241
Query: 381 RTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEV 431
+ ++A + P T L R + + + + +L++I++ Q A E+
Sbjct: 242 MAITDLALKQPDTHKDLARAAGVRGAVVRAHGDDILALIRDHQQKATRGEL 292
>gi|223939512|ref|ZP_03631388.1| 3'-5' exonuclease [bacterium Ellin514]
gi|223891784|gb|EEF58269.1| 3'-5' exonuclease [bacterium Ellin514]
Length = 372
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 124/259 (47%), Gaps = 18/259 (6%)
Query: 131 KLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQ 190
K+++ LK L +L S A+D E + ++ CL+QI+T D ++D L +
Sbjct: 16 KVIDSDVTLKNLLGRLSSTPWVALDTEADSLHAYPEKVCLLQITTPLGDELIDPLS-GIN 74
Query: 191 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLL 250
+ P L + F + +MHG+D D+ L++ +FDT ASR+L + L +L+
Sbjct: 75 LDPLL-DTFGG--HELIMHGSDYDLRLLRKHHAFVPKAIFDTMLASRLLGHTQFGLVHLV 131
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
H+ GV K Q ADW RPL M YAR DTHYL ++ D +K SD
Sbjct: 132 AHYLGVTLEKGSQKADWAKRPLTPRMEAYARNDTHYLKHLADRLK------------SDL 179
Query: 311 PLTEVYKRSYDVC-RQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIAR 368
+ ++C R + E E ++ ++G+ L LAV+ + WR+ A
Sbjct: 180 EVKGRLGWHQELCARLIIECSQNPEPDPDLVWRIKGSNRLYRPALAVLREVWRWREAEAI 239
Query: 369 ADDESTGYVLPNRTLIEIA 387
+ +VL + TLI+++
Sbjct: 240 VANRPPYFVLRHETLIDLS 258
>gi|149919604|ref|ZP_01908083.1| ribonuclease D, putative [Plesiocystis pacifica SIR-1]
gi|149819547|gb|EDM78975.1| ribonuclease D, putative [Plesiocystis pacifica SIR-1]
Length = 386
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 142/300 (47%), Gaps = 28/300 (9%)
Query: 138 DLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKL-------RVQ 190
+L LA +++ A+D E N ++ CL+Q++ F+VDTL L R +
Sbjct: 15 ELTALAQRMRDAAWVALDSESNSMFAYRERVCLLQLNVAGALFLVDTLALAGDSGEPRAE 74
Query: 191 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLL 250
L E P+ + +HG + D+ L+RDFGI L +FDT QA+ L R ++
Sbjct: 75 ALAALAEPLASPSLRLWIHGGEYDVACLKRDFGIALGGLFDTQQAASFLGWSRTGYAAVV 134
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE---- 306
C K ++ DW RP+ + LRYA +D +L + ++ ++ + + E
Sbjct: 135 EAVCEQKLPKAHKQHDWGRRPIDAKALRYALDDVVHLPRVGRELEARIGAADLDEELAIA 194
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA-GLNAQQLAVVAGLCEWRDV 365
N+ ++ ++D R ++ L+GA L A++L V+A + WR+
Sbjct: 195 NASVAAAPAHRSAFDPSR---------------MWKLKGARDLPAERLPVLAAIYRWRED 239
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQN 425
R D G ++ N L+ +A++ P AA L+R ++ + +I+ + +L+ I ++
Sbjct: 240 KGRELDHPPGRLIANEPLVHLARRAPRDAAALKR-MRLRRGFIQSHGEGLLAAIAAGLEG 298
>gi|118379200|ref|XP_001022767.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89304534|gb|EAS02522.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 722
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 126/274 (45%), Gaps = 42/274 (15%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ L++ + L++L L +D E + +++ G CL+QIST D+++D L +
Sbjct: 25 YILIDTLNKLQDLIPILLEQTRLGIDTEQSFAKTYEGFLCLIQISTDQNDYLIDVLGINS 84
Query: 190 QVG--PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSL 246
+ G L +VF K+ + +DI+WL+RDF + + N FD + + LK + NSL
Sbjct: 85 KQGINECLSKVFLCKDIIKIFYAGQQDILWLKRDFDLSVVNYFDVKECASFLKKSDDNSL 144
Query: 247 EYLLHHFCGVNAN----KEYQNADWRVRPLPDEMLRYAREDTHYLLYI-YDIMKIKLSSM 301
L+ +C + KE Q ++W RPL E L YA D+HYL+ I Y+++
Sbjct: 145 IQLIDRYCNYKLDKQKKKELQVSEWSNRPLSKEQLDYAALDSHYLIKIRYELL------- 197
Query: 302 PKESENSDTPLTEVYKRSYDVCRQL-------YEKELLSENSYLHIYGLQGAGLNAQQLA 354
+T + +KR+ +V Q+ YEK+ Y + + L Q+L
Sbjct: 198 ------CETIQSVGFKRTIEVINQMQQQTLKKYEKKKF---DYQYFFDLFQKQFKHQELY 248
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 388
++ D +S Y + N IAK
Sbjct: 249 A-----------SQIDKQSEVYRIINVIYCRIAK 271
>gi|254282849|ref|ZP_04957817.1| ribonuclease D [gamma proteobacterium NOR51-B]
gi|219679052|gb|EED35401.1| ribonuclease D [gamma proteobacterium NOR51-B]
Length = 372
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 126/273 (46%), Gaps = 40/273 (14%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++ V+ + L E+ A++ D A+D E + +F L+QI+T + +++D L L
Sbjct: 3 WEWVDSDRGLAEVVAQVIDGDFVAIDTEFRRRDTFWPEVALVQIATADQVWLIDPLPL-T 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEY 248
GP L E+ + T KV+H A D+ Q G+ +FDT +A+ +L S
Sbjct: 62 DTGP-LAELLQKSTLTKVLHSAGEDLEVFQAWLGVLPSPLFDTQKAAALLGYGFGLSYAK 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM------KIKLSSMP 302
L+ C V+ +K+ N+DW VRPL RYA +D YL+ +Y + + +L +
Sbjct: 121 LVEAVCQVSLDKDETNSDWLVRPLTSAQCRYAAQDVTYLVDVYSRLLGDAGTQGRLEWIL 180
Query: 303 KESENSDT----PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 358
+E E PL + ++ ++ L + LAV+ G
Sbjct: 181 EEGEGVSVGGRGPLAK-FRNAWK--------------------------LQPEALAVLYG 213
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
L +WR+ AR D ++L ++ + EI + LP
Sbjct: 214 LLDWREQQARERDRPRNWILHDKVINEIVRALP 246
>gi|310823888|ref|YP_003956246.1| ribonuclease d [Stigmatella aurantiaca DW4/3-1]
gi|309396960|gb|ADO74419.1| ribonuclease D [Stigmatella aurantiaca DW4/3-1]
Length = 389
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 131/296 (44%), Gaps = 17/296 (5%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
V + +E A L + E AVDLE + +F C +Q++T T+ F+ DTL V
Sbjct: 11 VVDASSAQEAARTLATAGELAVDLEADSMHAFRARLCFLQVATPTDIFLFDTLAPGVDAS 70
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L + DP + K H A D+ +L + GI + +FDT +A+ +L + L +
Sbjct: 71 -LLAPLMADPERTKYFHAAQGDLQFLA-EAGIRVRGLFDTHRAATLLGWPKVGLADIARE 128
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPL 312
GV KE+Q +D+ +RPLP EM Y D YL +L +E+ + L
Sbjct: 129 RLGVELPKEHQQSDFSLRPLPPEMREYIANDVRYL--------CELGRQVREACRTAGIL 180
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL----AVVAGLCEWRDVIAR 368
EV +C + + + + L +GL+ QL AV L R A
Sbjct: 181 EEVLLDCDRMCEEAVARPDVGADFK---PKLPRSGLSPVQLTLAHAVAHALHTKRLEWAE 237
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 424
+ G +L N + +IA +LP +L R + ++ + L+I++ ++
Sbjct: 238 KANVPMGRMLSNMAIGDIAVKLPANPKELARAAGVRGGFVREHGEETLAIVRELLE 293
>gi|344943543|ref|ZP_08782830.1| ribonuclease D [Methylobacter tundripaludum SV96]
gi|344260830|gb|EGW21102.1| ribonuclease D [Methylobacter tundripaludum SV96]
Length = 389
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 133/285 (46%), Gaps = 20/285 (7%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L +L ++K A+D E + +++ CL+QI+T +D + L P L +
Sbjct: 14 LVKLCEQIKKEPWLALDTEFLREKTYYPKFCLLQIATPEWVACIDPIAL-----PSLDIL 68
Query: 199 FK---DPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHFC 254
F+ P+ KV H +D+ + G +FDT A+ +L + N L+
Sbjct: 69 FEAIYSPSIVKVFHSCRQDLEIFYQLTGKLPEPLFDTQIAAPLLGFQENPGYAMLVSSLL 128
Query: 255 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 314
VN NK + ADW RPL D ++YA +D YL IY +M KL+ + + +E + E
Sbjct: 129 NVNLNKAHTRADWSKRPLIDAEIQYAADDVIYLCKIYQMMLQKLAELGR-AEWLERDFAE 187
Query: 315 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 374
+ LYE + E ++L I G L +QL++V L EWR+ A+ +D
Sbjct: 188 LANPD------LYEVK--PEKAWLKIKG--KNKLTGRQLSIVQALAEWREKAAQTEDRPK 237
Query: 375 GYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
++L + L ++AK P T ++L + + RY + +I
Sbjct: 238 SWLLRDEMLFDLAKLQPETVSELANVRAINERTVNRYGAELCQLI 282
>gi|254294269|ref|YP_003060292.1| ribonuclease D [Hirschia baltica ATCC 49814]
gi|254042800|gb|ACT59595.1| ribonuclease D [Hirschia baltica ATCC 49814]
Length = 390
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 133/291 (45%), Gaps = 21/291 (7%)
Query: 123 PSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVV 182
PS + KLV + +L + +LK + AVD E ++ +F CL+Q +T D ++
Sbjct: 2 PSNTRDELKLVADTDELIKACEELKKGEFIAVDTEFHRESTFWPKLCLIQAATLEFDCLI 61
Query: 183 DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL- 241
D L + + P+L ++ D ++ KV H A +D+ + G +FD+ A+ L
Sbjct: 62 DPLSPNIDLAPFL-DLMADTSRVKVFHAARQDMEIFTKLIGTPPAPIFDSQVAAMACGLG 120
Query: 242 ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
+ S E L+ +K Q DW+ RPL ++ L YAR D +L + Y +K KL +
Sbjct: 121 DSVSYENLVSQLLKARVDKSSQFTDWQRRPLTEKQLDYARGDVTHLRHCYVKLKAKLEKL 180
Query: 302 PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCE 361
+ + V +YD +N++ ++ LA++A + E
Sbjct: 181 GRMGWIEEETEILVNPDTYDTN---------PKNAWKR---MKIRKPRKDYLALIASVSE 228
Query: 362 WRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL-------LKSKH 405
WR+ +A+ D+ +L + + EIA+Q P + RL KSKH
Sbjct: 229 WREKLAQELDKPRSRILKDDAVQEIAQQKPIDVNAMERLRAVPKGFAKSKH 279
>gi|333985394|ref|YP_004514604.1| ribonuclease D [Methylomonas methanica MC09]
gi|333809435|gb|AEG02105.1| ribonuclease D [Methylomonas methanica MC09]
Length = 385
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 139/300 (46%), Gaps = 22/300 (7%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ ++ + L L ++ A+D E + +++ CL+QI+ VD L +
Sbjct: 3 IQYIDRPEQLPLLCEHIQQEPWIALDTEFLREKTYYPKFCLLQIAAPGWVACVDPLAID- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEY 248
+ P L +V +P KV+H +D+ + G +FDT A+ +L + N
Sbjct: 62 DLSP-LFDVIYNPEIVKVLHSCRQDLEIFFQITGRIPGPIFDTQIAAPLLGFQENPGYAM 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----E 304
L+ F +N +K + DW RPL ++ ++YA +D YL IY M +L + + E
Sbjct: 121 LVSSFLNINLSKAHTRTDWTQRPLSEDQIQYAADDVIYLCKIYTTMCEQLEKLGRLDWLE 180
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
S+ + E+Y+ S EN++L I G L +QL+++ L EWR+
Sbjct: 181 SDFALLNNAELYQLS-------------PENAWLKIRG--KNKLTGRQLSILQSLSEWRE 225
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 424
A+ +++ ++ P+ L+E+AK P T A L ++ + RY + +I + Q
Sbjct: 226 QTAQTENKPRNWLFPDDMLLELAKLQPVTLADLGKIRNINERSVNRYGKTLCELIDVARQ 285
>gi|115372643|ref|ZP_01459950.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1]
gi|115370364|gb|EAU69292.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1]
Length = 379
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 129/289 (44%), Gaps = 17/289 (5%)
Query: 140 KELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVF 199
+E A L + E AVDLE + +F C +Q++T T+ F+ DTL V L +
Sbjct: 8 QEAARTLATAGELAVDLEADSMHAFRARLCFLQVATPTDIFLFDTLAPGVDAS-LLAPLM 66
Query: 200 KDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNAN 259
DP + K H A D+ +L + GI + +FDT +A+ +L + L + GV
Sbjct: 67 ADPERTKYFHAAQGDLQFLA-EAGIRVRGLFDTHRAATLLGWPKVGLADIARERLGVELP 125
Query: 260 KEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRS 319
KE+Q +D+ +RPLP EM Y D YL +L +E+ + L EV
Sbjct: 126 KEHQQSDFSLRPLPPEMREYIANDVRYL--------CELGRQVREACRTAGILEEVLLDC 177
Query: 320 YDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL----AVVAGLCEWRDVIARADDESTG 375
+C + + + + L +GL+ QL AV L R A + G
Sbjct: 178 DRMCEEAVARPDVGADFK---PKLPRSGLSPVQLTLAHAVAHALHTKRLEWAEKANVPMG 234
Query: 376 YVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 424
+L N + +IA +LP +L R + ++ + L+I++ ++
Sbjct: 235 RMLSNMAIGDIAVKLPANPKELARAAGVRGGFVREHGEETLAIVRELLE 283
>gi|297727619|ref|NP_001176173.1| Os10g0437200 [Oryza sativa Japonica Group]
gi|255679435|dbj|BAH94901.1| Os10g0437200 [Oryza sativa Japonica Group]
Length = 89
Score = 90.9 bits (224), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/68 (60%), Positives = 54/68 (79%), Gaps = 3/68 (4%)
Query: 276 MLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN 335
+ RYAREDTHYLLYIYD+M+++L KES + + L EVYKRS ++C QLYEKELL+ +
Sbjct: 8 LFRYAREDTHYLLYIYDLMRLRLV---KESSDENDLLLEVYKRSKEICLQLYEKELLTHS 64
Query: 336 SYLHIYGL 343
SYL+I+G
Sbjct: 65 SYLYIHGF 72
>gi|308049432|ref|YP_003912998.1| ribonuclease D [Ferrimonas balearica DSM 9799]
gi|307631622|gb|ADN75924.1| ribonuclease D [Ferrimonas balearica DSM 9799]
Length = 374
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 136/292 (46%), Gaps = 16/292 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++ ++ DL L + + D A+D E + R+ L+Q+ ++D L+++
Sbjct: 7 WQWIDNDDDLAALCRQCRQKDAVALDTEFVRTRTLHAQLGLIQLYDGETLALIDPLEIQ- 65
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY- 248
+GP L ++ D KV+H A D+ G+ +FDT A +L L ++ Y
Sbjct: 66 DLGP-LWQLIADKNVVKVLHSASEDLEIFAYRGGVIPQPLFDTQVAGVLLNLG-GAMGYG 123
Query: 249 -LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
L+HH+ G+ +K DW RPL ++ L YA D +YLL +Y +M+ + M +
Sbjct: 124 KLIHHYLGLELDKGEARTDWLKRPLSEKQLTYAAADVYYLLQVYRMMRPAIEEMGR---- 179
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
L +++ CR + + +YL + L +QLAV+ L WR +A
Sbjct: 180 ----LDWLWQEGERACRGRLKPD-DPNKAYLKVKN--AWQLKPKQLAVLKALAAWRLGVA 232
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
D + +V+ + L+ +A++ P + A L + I+RY +L +I
Sbjct: 233 EQKDLALSFVVKDAALLNLARRAPRSMAYLANMDCLHEREIQRYGKTLLRVI 284
>gi|221194797|ref|ZP_03567854.1| ribonuclease D [Atopobium rimae ATCC 49626]
gi|221185701|gb|EEE18091.1| ribonuclease D [Atopobium rimae ATCC 49626]
Length = 376
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 131/285 (45%), Gaps = 15/285 (5%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
++L + V AVD E + +++ CL+Q+ST E +D L + + P +R
Sbjct: 7 EELISFCLRAAHVPVLAVDTEFLREKTYYPKLCLVQVSTGEEIAAIDPLSID-DLSPLVR 65
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHFCG 255
+F+D KV+H +D+ L +FDT A+ L + ++ S ++ H+ G
Sbjct: 66 -LFEDQKIVKVIHACSQDLEVLLYGMHCACAPVFDTQLAAAFLGMRQQASYASVVEHYMG 124
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 315
V+ K DW RPL E L YA +D YL IY M +L M P
Sbjct: 125 VHLPKTESLTDWSRRPLDPEQLVYAEDDVRYLPDIYRCMYERL--MKTNRLGWLMPEMNA 182
Query: 316 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 375
Y + R + +YLH+ + L +Q+A+ +C WR+ A +
Sbjct: 183 YTAPENFKRD-------PKEAYLHLK--RSNSLTRRQMALAREICAWREERAAQHNIPRK 233
Query: 376 YVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK 420
+++ + TL+EI K+ P T+ +L+R ++ S + + +L+ IK
Sbjct: 234 WIISDETLVEICKRSPATSERLKR-IRGTESLSQESVASILAAIK 277
>gi|409910998|ref|YP_006889463.1| ribonuclease D [Geobacter sulfurreducens KN400]
gi|298504558|gb|ADI83281.1| ribonuclease D, putative [Geobacter sulfurreducens KN400]
Length = 381
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 124/269 (46%), Gaps = 14/269 (5%)
Query: 123 PSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVV 182
P L +P +++ V ++ LA +L A DLE + + CL+Q + +V
Sbjct: 2 PLLPVSP-EIITTVDGVRRLADRLGREPIVACDLEADSMHHYQEKVCLIQFAVPGYAAIV 60
Query: 183 DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE 242
D L + P L +F + +KV HGAD DI L RDFG+ + N+FDT A ++L
Sbjct: 61 DPLAA-PDISP-LAPLFANAAIRKVFHGADYDIRSLHRDFGMEVNNLFDTMIACQLLGER 118
Query: 243 RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 302
L L GV +K+YQ ADW RPL M+ YA +DT L+ + + L +
Sbjct: 119 EFGLAAQLRKRFGVELDKQYQRADWSRRPLTPGMIEYAVKDTTLLIELCWQLATDLEAKG 178
Query: 303 KESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEW 362
+ + ++ ++ E E +L G + ++ + LAV+ L +
Sbjct: 179 RRGWVEE---------ECELLSRVRVAERGDEPFFLRFKG--ASRMDGRTLAVLEELLAF 227
Query: 363 RDVIARADDESTGYVLPNRTLIEIAKQLP 391
RD AR D VL T+ E+A++ P
Sbjct: 228 RDGRARQVDVPPFKVLGTDTVRELAERRP 256
>gi|90416003|ref|ZP_01223936.1| ribonuclease D [gamma proteobacterium HTCC2207]
gi|90332377|gb|EAS47574.1| ribonuclease D [gamma proteobacterium HTCC2207]
Length = 374
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 139/295 (47%), Gaps = 16/295 (5%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
++ + L EL +L+ E A+D E + +F L+Q+S + +++DT + Q+
Sbjct: 8 IDNSQQLAELCEQLQDATELAIDTEFMRSDTFFAKLALIQLSDGEQCWLIDTPAIE-QLQ 66
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LL 250
P L + P V H D+ L + + +FD+ A+ ++ + S+ Y L+
Sbjct: 67 P-LTALLNGPQLTLVFHSCGEDLEVLDQVLSVRPKKLFDSQVAAGIVNIG-YSMGYARLV 124
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
+ + KE +DW RPL D RYA +D YL IY ++ L ++S ++
Sbjct: 125 ENMLQIELGKEDTRSDWLARPLSDRQKRYAADDVLYLFRIYKLLLELLEQQQRQSWFAEE 184
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
L D+ R E+ + + YL + G L+A LAV+ LCEWR+ ARA
Sbjct: 185 ML--------DLQRVAAERRE-ALDYYLRVKG--AWRLDALSLAVLKRLCEWRERAARAL 233
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQN 425
D+ +++ + L+E+A PT ++L ++ ++R+ VL I N N
Sbjct: 234 DKPRSHIVKDNVLLELANNKPTHMSQLHQIDDWYSRSVKRFGEQVLQEIANVDHN 288
>gi|389585358|dbj|GAB68089.1| 3'-5' exonuclease domain containing protein [Plasmodium cynomolgi
strain B]
Length = 1136
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 91/182 (50%), Gaps = 3/182 (1%)
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKELAAKLK-SVDEFAVDLEHNQYRSFLGLTCLMQISTR 176
E KP L + K++ +L E+ +K + ++ L N ++ G T L+ + T
Sbjct: 460 ELQKPVQLSEKECKIISNEGELVEMVHTIKEKCSKMSLSLVVNYKNTYRGFTSLILVGTE 519
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
D+++DTL + Q+ L EV DP K+++ + +Q+DF IY N+ D S
Sbjct: 520 ECDYIIDTLHMFEQMHE-LNEVTTDPNILKILYKSKNITPVMQKDFSIYFVNIIDISICS 578
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296
L + RNSL YL+H++ V+ N + RPL +M+ R HYL Y+++ +K
Sbjct: 579 DFLSV-RNSLPYLVHNYFHVSVNSAGHGLNALTRPLSPDMVHNLRTPFHYLYYLFEYVKT 637
Query: 297 KL 298
L
Sbjct: 638 DL 639
>gi|119505873|ref|ZP_01627938.1| ribonuclease D [marine gamma proteobacterium HTCC2080]
gi|119458301|gb|EAW39411.1| ribonuclease D [marine gamma proteobacterium HTCC2080]
Length = 380
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 132/282 (46%), Gaps = 42/282 (14%)
Query: 128 TPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKL 187
T + V + L E+ A + AVD E + +F L+Q++ + +++D L L
Sbjct: 7 TSCRWVRDTTALNEMVALISQEAFVAVDTEFRRRDTFYPEVALIQLAAAGQCWLLDPLTL 66
Query: 188 RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLE 247
P L+++F+ K++H A D+ +R G+ M DT +A+ +L L L
Sbjct: 67 D-DTQP-LQKLFRQTDLIKILHSASEDLEVFERWLGVLPRPMIDTQKAAAMLGLG-FGLS 123
Query: 248 Y--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK------LS 299
Y L+H ++ K+ +DW VRPL D YA +D +L + I++ + LS
Sbjct: 124 YRDLVHDLLSIDVAKDETQSDWLVRPLTDAQCHYAMQDVTFLAQCWPILEARAEASGYLS 183
Query: 300 SMPKESENSDT----PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV 355
+ +ES T PL + +K ++ LN+QQLAV
Sbjct: 184 WILEESAAMVTGGRGPLAK-FKSAWK--------------------------LNSQQLAV 216
Query: 356 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
+ L +WR+ AR + ++L ++ ++++AK++PT+ +L
Sbjct: 217 LLDLIDWRESKARDRNRPRNWILHDKVILDLAKRIPTSMPQL 258
>gi|197105155|ref|YP_002130532.1| ribonuclease D [Phenylobacterium zucineum HLK1]
gi|196478575|gb|ACG78103.1| ribonuclease D [Phenylobacterium zucineum HLK1]
Length = 392
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 144/321 (44%), Gaps = 16/321 (4%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
+ +L+ AKLK AVD E + ++ CL+Q + + + V+D L + +
Sbjct: 4 ITTTAELEAFCAKLKGQPFVAVDTEFMRETTYWPKLCLIQAAAPSAEAVIDPLADDIDLS 63
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLH 251
+L ++ +D + +KV H A +D+ + + G +FDT A E+ + + L+
Sbjct: 64 CFL-DILRDESIQKVFHAARQDVE-IFNNLGAMPKPLFDTQVAGMAAGFGEQIAYDALVR 121
Query: 252 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP 311
+ +K + DW RPL D L YA D +L +Y +++ +L + + +D
Sbjct: 122 QMLKIEIDKSSRFTDWARRPLSDSQLTYALADVTHLAKLYPLLRQRLEREGRLAWVTDEM 181
Query: 312 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 371
+YDV EN++ L+ A+ LAV + WR+ A+ D
Sbjct: 182 NDLTDPANYDVE---------PENAWKR---LRPRRHTAKYLAVYRAVAAWRERTAQLRD 229
Query: 372 ESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP-VLSIIKNSMQNAANFE 430
+ G +L + + EIA Q PT A L RL + GP +L+ ++ ++++ +
Sbjct: 230 QPRGRILKDDAIDEIATQTPTDADALDRLRSVPKGFSGSRFGPDLLAAVREALKDPEGYA 289
Query: 431 VIAQKLKEERMEVASEETEVL 451
+ +K ++ A E+L
Sbjct: 290 PVIEKTRQPASPAAGAVVELL 310
>gi|28572529|ref|NP_789309.1| ribonuclease [Tropheryma whipplei TW08/27]
gi|28410661|emb|CAD67047.1| putative ribonuclease [Tropheryma whipplei TW08/27]
Length = 360
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 126/255 (49%), Gaps = 24/255 (9%)
Query: 152 FAVDLEH-NQYRSFLGLTCLMQISTR-TEDFVVDTLKL--RVQVGPYLREVFKDPTKKKV 207
FA+D E N+++ L+Q+ R T F+ DT K+ ++G + +++ V
Sbjct: 8 FAIDTERANRFKYDQEFPWLVQLYRRPTGCFIFDTSKIDNLSKLGDLI------GSEEVV 61
Query: 208 MHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADW 267
+H A DI L+R GI++ N+FDT A R+L + + +L Y+ F V KEY +W
Sbjct: 62 IHAAINDIKSLKR-VGIHITNLFDTEIACRLLNIPKVNLSYVTEKFINVKLRKEYSTVNW 120
Query: 268 RVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLY 327
RPL + L YA D +LL + +K L +EN E + + V + +
Sbjct: 121 SARPLNKKYLEYAEGDVKHLLDLSQALKTAL-----RAENKLEIAKEEFSHVFMVVK--H 173
Query: 328 EKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 387
+ E+ + + H GL+ + Q AV L + RD IAR+ D T +L N+ + +A
Sbjct: 174 QSEIDKLDKFCH--GLE----DDMQRAVAKNLWKARDEIARSKDIFTPRILSNKAIRILA 227
Query: 388 KQLPTTAAKLRRLLK 402
KQ+P L+ LLK
Sbjct: 228 KQVPENLEILKTLLK 242
>gi|305680942|ref|ZP_07403749.1| putative ribonuclease D [Corynebacterium matruchotii ATCC 14266]
gi|305659147|gb|EFM48647.1| putative ribonuclease D [Corynebacterium matruchotii ATCC 14266]
Length = 408
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 116/250 (46%), Gaps = 21/250 (8%)
Query: 153 AVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGP-----YLREVFKDPTKKKV 207
AVD E + CL+QI T+ + V+ P ++ V D V
Sbjct: 40 AVDTERVSGFRYHNRVCLLQIRRAG----AGTMLIDVESDPQATTDFMGRVLTD--TGWV 93
Query: 208 MHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADW 267
+H A D+ +L++ + +FDT A R L R +L ++ H+ GV K + DW
Sbjct: 94 VHAATSDLPYLEQ-LRLRPAQLFDTELAGRFLGFHRVNLAAMVEHYLGVRLRKNHGGEDW 152
Query: 268 RVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLY 327
RP+P E L YA D YLL + D M+ +L+ +P E D ++Y
Sbjct: 153 SRRPIPSEWLDYAALDVEYLLPLADAMRSELT--------QQSPKDEWVAEECDYLTRVY 204
Query: 328 EKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 387
+ S+ + G++ ++QL V L + R+ +A+A D + +LP++TL+ +A
Sbjct: 205 RGYSPTPKSWEDLKGVRRLR-TSKQLQVARWLWQVREKLAQASDTAVSRLLPDKTLVALA 263
Query: 388 KQLPTTAAKL 397
+LPTT K+
Sbjct: 264 TELPTTVPKV 273
>gi|357509029|ref|XP_003624803.1| hypothetical protein MTR_7g087630, partial [Medicago truncatula]
gi|355499818|gb|AES81021.1| hypothetical protein MTR_7g087630, partial [Medicago truncatula]
Length = 106
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 56/79 (70%), Gaps = 3/79 (3%)
Query: 55 KSKVPFHVPTITKPQEEYKIVVNNANQPFQHVWL--QKSEDSGRFIHPLDNLSVLDFVDK 112
K KV FHV T+ K Q Y + V+N+NQ F+HVWL +K+ED RF+HPL+ SVLDFVDK
Sbjct: 28 KKKVSFHVHTLRKLQYHYNLAVDNSNQTFEHVWLEKEKTEDGERFVHPLEYYSVLDFVDK 87
Query: 113 D-IGDVEAVKPPSLEQTPF 130
+ I + VKPP LE TPF
Sbjct: 88 NSIESLVPVKPPPLECTPF 106
>gi|28493361|ref|NP_787522.1| ribonuclease D [Tropheryma whipplei str. Twist]
gi|28476402|gb|AAO44491.1| ribonuclease D [Tropheryma whipplei str. Twist]
Length = 391
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 126/255 (49%), Gaps = 24/255 (9%)
Query: 152 FAVDLEH-NQYRSFLGLTCLMQISTR-TEDFVVDTLKL--RVQVGPYLREVFKDPTKKKV 207
FA+D E N+++ L+Q+ R T F+ DT K+ ++G + +++ V
Sbjct: 39 FAIDTERANRFKYDQEFPWLVQLYRRPTGCFIFDTSKIDNLSKLGDLI------GSEEVV 92
Query: 208 MHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADW 267
+H A DI L+R GI++ N+FDT A R+L + + +L Y+ F V KEY +W
Sbjct: 93 IHAAINDIKSLKR-VGIHITNLFDTEIACRLLNIPKVNLSYVTEKFINVKLRKEYSTVNW 151
Query: 268 RVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLY 327
RPL + L YA D +LL + +K L +EN E + + V + +
Sbjct: 152 SARPLNKKYLEYAEGDVKHLLDLSQALKTAL-----RAENKLEIAKEEFSHVFMVVK--H 204
Query: 328 EKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 387
+ E+ + + H GL+ + Q AV L + RD IAR+ D T +L N+ + +A
Sbjct: 205 QSEIDKLDKFCH--GLE----DDMQRAVAKNLWKARDEIARSKDIFTPRILSNKAIRILA 258
Query: 388 KQLPTTAAKLRRLLK 402
KQ+P L+ LLK
Sbjct: 259 KQVPENLEILKTLLK 273
>gi|294084191|ref|YP_003550949.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322]
gi|292663764|gb|ADE38865.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322]
Length = 409
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 130/283 (45%), Gaps = 20/283 (7%)
Query: 146 LKSVDEF------AVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVF 199
L+ VDEF A+D E + R++ CL+Q+ T+ +D L + + P L +
Sbjct: 38 LRVVDEFRGKPFLAIDTEFMRERTYYPQLCLIQVGDGTKAVAIDPLAKNLNLEP-LWSLM 96
Query: 200 KDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHFCGVNA 258
+D + KV H ++D+ + G ++DT A V ++ + L+ G N
Sbjct: 97 RDESIIKVFHAGNQDMEIFLNEMGGLPSPVYDTQIAGLVCGHGDQIGYDSLVKSILGKNV 156
Query: 259 NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKR 318
+K + DW RPL D + YA +D YL IY IM K++ SEN L E +K+
Sbjct: 157 DKTSRFTDWSKRPLTDRQISYALDDVIYLAQIYPIMLDKIA-----SENRTNWLDEEFKK 211
Query: 319 SYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVL 378
D + + EN++ I + L A L + L WR++ A+ + V+
Sbjct: 212 FSDPATYVTK----PENAWKRI---KIRHLKAPALMRLMRLAAWREIEAQNRNVPRNRVI 264
Query: 379 PNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKN 421
+ TLI++A P T + ++ +++ PVL +I++
Sbjct: 265 RDETLIDLAGTAPNTINEFSKIRNFPGGTDGKFVKPVLKVIQD 307
>gi|269956679|ref|YP_003326468.1| 3'-5' exonuclease [Xylanimonas cellulosilytica DSM 15894]
gi|269305360|gb|ACZ30910.1| 3'-5' exonuclease [Xylanimonas cellulosilytica DSM 15894]
Length = 420
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 12/191 (6%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
++H A +D+ L + G+ ++FDT A+R+L LER L ++ G+ KE+ D
Sbjct: 111 ILHAASQDLPGLA-EHGLRPASVFDTELAARLLGLERVGLAAVVADTLGLGLAKEHSAVD 169
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP + LRYA D L + D++ +L+ K +E + ++ R
Sbjct: 170 WSTRPLPVDWLRYAALDVEVLGEVRDVLAERLADAGK---------SEWAAQEFEAVRT- 219
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
+ + + G + ++LAVV L E RD ARA D + G VLP+R ++
Sbjct: 220 APPPPPRVDPWRRVSGTHTL-RDRRKLAVVRALWEARDASARARDVAPGRVLPDRAIVAA 278
Query: 387 AKQLPTTAAKL 397
A LP TA +L
Sbjct: 279 ANALPRTAGQL 289
>gi|444911412|ref|ZP_21231587.1| Ribonuclease D [Cystobacter fuscus DSM 2262]
gi|444718170|gb|ELW58986.1| Ribonuclease D [Cystobacter fuscus DSM 2262]
Length = 388
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 127/290 (43%), Gaps = 17/290 (5%)
Query: 146 LKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKK 205
L+ E +VD+E + SF C +Q++T T+ F+ DTL+ V L V +DP +
Sbjct: 24 LEQARELSVDVETDAMHSFRARLCFLQLATDTDVFLFDTLQPGVHPS-LLARVMEDPERT 82
Query: 206 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNA 265
K H A D+ +L + G+ + +FDT +A+ +L + L L GV KE+Q +
Sbjct: 83 KFFHAASGDLPFLA-EAGVRVRGLFDTHRAATLLGWPKVGLADLARERLGVELPKEHQQS 141
Query: 266 DWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQ 325
D+ +RPLP M Y D YL ++L +E L EV D R
Sbjct: 142 DFALRPLPPGMRDYIANDVRYL--------VELGRQVREECRKADVLEEVL---LDCQRM 190
Query: 326 LYEKELLSENSYLHIYGLQGAGLNAQQL----AVVAGLCEWRDVIARADDESTGYVLPNR 381
E + L GL QL + L + R A A++ G L N
Sbjct: 191 CDEAAARPDVGAEFKPKLPKGGLTPAQLLLANTIAQALHKKRLEWAEAENVPMGRTLSNM 250
Query: 382 TLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEV 431
+ +IA + P +L R + +++ + V+S+++ ++ + E+
Sbjct: 251 AITDIAIKPPGNPKELARAAGVRGAFVRAHGEEVISLVRELLEKSRQGEL 300
>gi|221059461|ref|XP_002260376.1| 3'-5' exonuclease [Plasmodium knowlesi strain H]
gi|193810449|emb|CAQ41643.1| 3'-5' exonuclease, putative [Plasmodium knowlesi strain H]
Length = 1124
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 93/182 (51%), Gaps = 3/182 (1%)
Query: 118 EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSV-DEFAVDLEHNQYRSFLGLTCLMQISTR 176
E KP L + K++ +L E+ +KS+ + ++ N ++ G T L+ + T
Sbjct: 468 ELKKPLELSEKECKIISTEGELLEMVRTIKSMCTKMSLSPVVNYKNTYRGFTSLILVGTE 527
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
D+++DTL + ++ L ++ DP K+++ + I +Q+DF IY NM D S
Sbjct: 528 ECDYIIDTLYMFEKIHE-LNDITTDPNILKILYKSKNIIPVMQKDFSIYFVNMIDISVCS 586
Query: 237 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296
L + RNSL YL+H++ VN N + RPL +++ R HYL Y+++ +K
Sbjct: 587 DFLSV-RNSLHYLVHNYFHVNVNSAGNGLNALTRPLSPDLVSNLRMPFHYLYYLFEYVKT 645
Query: 297 KL 298
L
Sbjct: 646 DL 647
>gi|355575967|ref|ZP_09045340.1| ribonuclease D [Olsenella sp. oral taxon 809 str. F0356]
gi|354817183|gb|EHF01693.1| ribonuclease D [Olsenella sp. oral taxon 809 str. F0356]
Length = 376
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 116/253 (45%), Gaps = 20/253 (7%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
AVD E + R++ CL+Q++T E VD + + + P LR + +D + KV H
Sbjct: 22 LAVDTEFLRERTYFPRLCLIQVATADESCAVDPILIE-DLTP-LRRLLEDRSVTKVFHAC 79
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRV 269
+D+ + G +FDT A+ L R + Y L+ CGV K DW
Sbjct: 80 TQDLEVILDGMGCVPAPVFDTQLAAAFLG-HRQQIGYGALVEACCGVRLPKAESLTDWSR 138
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES--ENSDTPLTEVYKRSYDVCRQLY 327
RPL E LRYA +D YL IY+ M +L+ + + E LT+ + D
Sbjct: 139 RPLDAEQLRYAEDDVIYLPRIYEQMVSELARRDRLAWLEPEMRSLTDPSRVERD------ 192
Query: 328 EKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 387
++YLH+ + L +QL+V C WR+ A + +V+ + L+E+
Sbjct: 193 -----PRDAYLHLK--RSNSLTRRQLSVAREACAWREREAARRNIPRKWVVSDEVLVELC 245
Query: 388 KQLPTTAAKLRRL 400
K+ P +LRR+
Sbjct: 246 KRAPRGVDRLRRI 258
>gi|210632651|ref|ZP_03297493.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279]
gi|210159428|gb|EEA90399.1| ribonuclease D [Collinsella stercoris DSM 13279]
Length = 377
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 117/265 (44%), Gaps = 20/265 (7%)
Query: 138 DLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLRE 197
DL + + A+D E + R++ CL+Q++T E V+D L + + P L E
Sbjct: 8 DLSAFCGRARCHVAIAIDTEFLRERTYHAKLCLVQVATPDECVVIDPLTID-DLSP-LAE 65
Query: 198 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCG 255
+ D KV H +D+ L G+ +FDT A+ L ER Y L+H FCG
Sbjct: 66 LMADVDTLKVFHACSQDMEVLVHTLGVCPAPIFDTQVAAGFLG-ERAQCSYHNLVHSFCG 124
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD--TPLT 313
V+ K DW RPL + + YA +D YL+ Y +++ KL S+ + + D PL
Sbjct: 125 VSLPKTESLTDWSRRPLSPQQIEYAVDDVRYLIDAYRVIESKLHSLGRTAWVRDEIRPLA 184
Query: 314 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 373
+ D +++ + + +QLAV L WR+ A D
Sbjct: 185 DPAHYRSD-----------PRSAFKRVKRINAC--TRRQLAVARELAAWREHRAEDRDIP 231
Query: 374 TGYVLPNRTLIEIAKQLPTTAAKLR 398
+V+ + L+ + +++P T R
Sbjct: 232 RKWVMSDEVLVALCRRVPKTIEDFR 256
>gi|170782038|ref|YP_001710370.1| ribonuclease [Clavibacter michiganensis subsp. sepedonicus]
gi|169156606|emb|CAQ01757.1| putative ribonuclease [Clavibacter michiganensis subsp.
sepedonicus]
Length = 443
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 195 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 254
L EV +D + V+H A +D+ L R+ G+ +FDT ASR+L L R L ++
Sbjct: 114 LDEVIRD--VEWVLHAASQDLACL-REVGLDPQRIFDTELASRLLGLPRVGLGTVVEELL 170
Query: 255 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDT 310
G++ KE+ ADW RPLP L YA D L+ + D + +L K E E + T
Sbjct: 171 GIHLAKEHSAADWSTRPLPRAWLVYAALDVELLVDVRDEIARRLEEQGKTAIAEQEFAAT 230
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
E + R+L S LH G++G + LAV L E RD AR
Sbjct: 231 IAKEAKPARVEPWRRL---------SGLH--GVRG----GRGLAVAKELWEARDAYAREV 275
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLL----KSKHSYIERYMGPV 415
D S G ++P+ +L+ +A+ LP T L + ++ S I+R+ V
Sbjct: 276 DTSPGRLVPDGSLVAVARILPQTKRDLAAVREFSGRASRSEIDRWWAAV 324
>gi|148272845|ref|YP_001222406.1| putative ribonuclease D [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830775|emb|CAN01715.1| putative ribonuclease D [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 496
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 24/217 (11%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A +D+ L R+ G+ +FDT ASR+L L R L ++ G++ KE+ AD
Sbjct: 177 VLHAASQDLACL-REVGLDPQRIFDTELASRLLGLPRVGLGTVVEELLGIHLAKEHSAAD 235
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDTPLTEVYKRSYDV 322
W RPLP L YA D L+ + D + +L K E E + T E +
Sbjct: 236 WSTRPLPRAWLVYAALDVELLVDVRDEIARRLEEQGKTGIAEQEFAATIAKEAKPARVEP 295
Query: 323 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 382
R+L S LH G++G + LAV L E RD AR D S G ++P+ +
Sbjct: 296 WRRL---------SGLH--GVRG----GRNLAVAKELWEARDAYAREVDTSPGRLVPDGS 340
Query: 383 LIEIAKQLPTTAAKLRRLL----KSKHSYIERYMGPV 415
L+ +A+ LP T L + ++ S I+R+ V
Sbjct: 341 LVAVARVLPQTKRDLAAVREFSGRASRSEIDRWWAAV 377
>gi|350563555|ref|ZP_08932376.1| ribonuclease D [Thioalkalimicrobium aerophilum AL3]
gi|349778690|gb|EGZ33041.1| ribonuclease D [Thioalkalimicrobium aerophilum AL3]
Length = 390
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 144/308 (46%), Gaps = 17/308 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRT-EDFVVDTLKLR 188
F+L+ + L L +LK AVD E + +F L+QI+T T +++D L ++
Sbjct: 3 FQLITDDTALNTLCIELKQHKWLAVDTEFMRQDTFFAQLALIQIATPTLAVYIIDPLSIK 62
Query: 189 VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLE 247
+ L ++F + KV H A +D+ L + +FDT AS L L ++ S
Sbjct: 63 NLIP--LWQLFSNTNITKVFHAARQDLEILYQQAECMPLPIFDTQIASVFLGLGDQASYA 120
Query: 248 YLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
L+ CG N NK+ W RPL DE L YA D +L Y I+ L+ +++
Sbjct: 121 RLIEKLCGENINKDQARTQWLDRPLLDEQLEYAAADVWHLAQAYPILLKSLTPTQRQAIQ 180
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
+D + D LY E ++L + + L+ +QL ++ L WR+ A
Sbjct: 181 AD------FNNLTDPS--LYRTE--PAQAWLRMKP--SSSLSNKQLGLLKHLAAWREEQA 228
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 427
++ +++ + LI++AK+ L +L + I ++ ++ ++ +MQ+A
Sbjct: 229 VTLNQPRKWIVNDEALIQLAKRPVREVQDLHKLNQFDGETIRQHGESLIRVLDKAMQDAE 288
Query: 428 NFEVIAQK 435
N+ V AQK
Sbjct: 289 NWPV-AQK 295
>gi|319784197|ref|YP_004143673.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317170085|gb|ADV13623.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 383
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 126/270 (46%), Gaps = 24/270 (8%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
K+L+ + A + D VD E + +F + CL+Q++ ++D L + + P+ R
Sbjct: 8 KELETVLAAFEKSDFVTVDTEFIRETTFWPILCLIQMAAPGVTALIDPLAPDIDLKPFFR 67
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQASRVLKL-ERNSLEYLL 250
+ + KV H A +DI + ++L ++ FDT A+ V + S + L+
Sbjct: 68 -LMANEAVVKVFHAARQDI-----EIIVHLGDLVPHPVFDTQVAAMVCGFGDSVSYDQLV 121
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G +K + DWR RPL D+ L YA D +L+ +Y + +L E EN
Sbjct: 122 QRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHLSAEL-----ERENRAH 176
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
L E + R+ Y+ E+++ L+ Q+LA+V G+ WR+ AR
Sbjct: 177 WLNE--EMEVLTSRETYDPH--PEDAWKR---LKMRLRKPQELAIVQGVAAWREREARER 229
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
D G VL + + E+A+Q P AA L +L
Sbjct: 230 DVPRGRVLKDDAIYEVAQQAPRDAAALGKL 259
>gi|423712809|ref|ZP_17687107.1| ribonuclease D [Bartonella washoensis Sb944nv]
gi|395410505|gb|EJF77059.1| ribonuclease D [Bartonella washoensis Sb944nv]
Length = 384
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 124/272 (45%), Gaps = 14/272 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
KL+ + KDL+ A L++ D VD E + +F CL+Q+++ ++D + +
Sbjct: 2 MKLITQTKDLETALAALRTSDFVTVDTEFIRETTFWPQLCLIQLASPDTTMLIDPIAPDI 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEY 248
+ P+ ++ D KV H A +DI + GI +FDT A + + S +
Sbjct: 62 DLKPFF-DLMADKKIVKVFHAARQDIETIYHLGGIVPYPLFDTQIAGSICGFGDSISYDQ 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
++ G + +K + DW RPL ++ L YA D YL IY ++K +L +
Sbjct: 121 IVQRCTGHHIDKSSRFTDWSCRPLSEKQLLYALADVTYLRDIYLLLKKQLEKNKRTHWMD 180
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
D + ++YD + E+ + L ++LA++ + WR+ AR
Sbjct: 181 DEIAILLNPKTYD----------MPEDEAWKKVKGKVKKL--RELAILQKIAAWREREAR 228
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ +++ + LIEIA Q PT + L RL
Sbjct: 229 KHNVPRRHIMKDEHLIEIAIQQPTDESALNRL 260
>gi|145509024|ref|XP_001440456.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407673|emb|CAK73059.1| unnamed protein product [Paramecium tetraurelia]
Length = 733
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 7/154 (4%)
Query: 153 AVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV---QVGPYLREVFKDPTKKKVMH 209
VD+EH F G ++QI + +++D +++ V ++ +++F+D KV +
Sbjct: 61 GVDIEHTNDIGFDGQISIVQIKDDEDVYIIDVIEIGVDNQKLINVFKQIFEDDKIIKVFY 120
Query: 210 GADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY----QNA 265
D++WL+RDF I + N FD + + KL + SL +L +C +K Y Q +
Sbjct: 121 AGSTDVLWLKRDFQITIQNFFDIKEVADECKLSKISLIFLWKQYCDHQVSKSYKTNMQTS 180
Query: 266 DWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
DW RPL E L YA D +YL Y+ ++ +LS
Sbjct: 181 DWAERPLTQEQLIYAAYDCYYLPYLRYVLLEELS 214
>gi|331005546|ref|ZP_08328920.1| Ribonuclease D [gamma proteobacterium IMCC1989]
gi|330420648|gb|EGG94940.1| Ribonuclease D [gamma proteobacterium IMCC1989]
Length = 383
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 139/293 (47%), Gaps = 26/293 (8%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L +L L + A+D E + R++ L+QI+ +++D L + P + +V
Sbjct: 27 LADLCQSLSTQSAIALDTEFVRTRTYYPHIGLLQIADENGVYLIDPLAIS-DTQP-MADV 84
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGV 256
++P KV+H D+ Q FG+ ++FDT Q + +S+ Y LL +
Sbjct: 85 LQNPAIVKVVHACSEDLEVFQYAFGVLPESLFDT-QVAAGFAGYGSSIGYANLLREIKRI 143
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
+ K+ +DW RPL D LRYA D YLL IY + KL + L V
Sbjct: 144 DIPKQETRSDWLQRPLSDAQLRYAALDVEYLLEIYRGLVEKLQQQQR--------LLWVE 195
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQ---GAGLNAQQLAVVAGLCEWRDVIARADDES 373
C+++ EK L S+ + Y + L+A+QL V+A +C WR+ A+ +D
Sbjct: 196 AD----CQRMIEK--LRNTSHENTYYTRVKSAWKLDAEQLTVLAAICRWREGQAKKNDVP 249
Query: 374 TGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI----ERYMGPVLSIIKNS 422
+L + +L +IA +LP +L+R+ + ++ + ++G V+ + ++
Sbjct: 250 RSRILKDVSLFDIALKLPMDMQQLKRIQEIPSRFLGELGKEFLGVVIETLNDT 302
>gi|254786713|ref|YP_003074142.1| ribonuclease D [Teredinibacter turnerae T7901]
gi|237686111|gb|ACR13375.1| ribonuclease D [Teredinibacter turnerae T7901]
Length = 393
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 130/277 (46%), Gaps = 14/277 (5%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
L + P + + +LK K + AVD E + +++ +T L+Q++ +++D
Sbjct: 5 LRKQPVQWITTAAELKACCDKWITQRMLAVDTEFMRSQTYYPITGLIQVNDGNTSYLIDP 64
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L P L E+ ++P KV+H D+ R GI +M DT AS + +
Sbjct: 65 LAFD-DFTP-LAELMENPGVLKVLHSCSEDLEVFHRFLGIVPKHMLDTQIASALCGYGFS 122
Query: 245 -SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
L+H G KE +DW RPL + YA D YL + I+ +KL ++ +
Sbjct: 123 VGFGKLVHAVLGEELPKEETRSDWLHRPLSSAQIDYAAIDVEYLYKLASILVLKLKNLGR 182
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
LT V + + RQ + + + +NS I Q L+ +QLA++ L +WR
Sbjct: 183 --------LTWVAEDCEAMLRQFADNQAV-DNSDARIK--QAWRLSQRQLAILKKLAQWR 231
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ +A+ D V+ +L+++A++ P A+LR+L
Sbjct: 232 EEVAQRRDVPRNRVIKEHSLLDLAQRTPDHVAQLRKL 268
>gi|335420266|ref|ZP_08551304.1| ribonuclease D [Salinisphaera shabanensis E1L3A]
gi|334894625|gb|EGM32810.1| ribonuclease D [Salinisphaera shabanensis E1L3A]
Length = 382
Score = 85.9 bits (211), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 119/261 (45%), Gaps = 16/261 (6%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L E AA+++ D A+D E + ++ CL+QI+ E ++D + L + P L +
Sbjct: 18 LAEFAARMRERDWIAIDTEFLRESTYYPELCLVQIADAHEIGLIDVIALD-DLEP-LAAL 75
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGV 256
D + KV H A++D+ L + FG +FDT A+ ++ L+ + + Y L+ +
Sbjct: 76 LTDTSVLKVFHSAEQDLEVLYQRFGTMPAPLFDTQVAAPLVGLD-DQMGYARLIKALLDI 134
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
K + DW RPLP L YA +D YL Y ++ L +E+ D V
Sbjct: 135 ELPKAHTRTDWSKRPLPTGALDYAADDVRYLALAYHVIGNTLVEHEREAWLVDDFEQMVQ 194
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
+DV + + S + LN Q +A + +WR+ A A D +
Sbjct: 195 PERFDVDTSAAWRRIKSWHR-----------LNPAQQQALAEIADWREREAMASDRPRRW 243
Query: 377 VLPNRTLIEIAKQLPTTAAKL 397
+L + +IE+AK+ P A L
Sbjct: 244 ILADDIVIELAKRRPQNADAL 264
>gi|406894045|gb|EKD38950.1| hypothetical protein ACD_75C00553G0006 [uncultured bacterium]
Length = 378
Score = 85.9 bits (211), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 138/308 (44%), Gaps = 40/308 (12%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTED-FVVDTLKLRVQ 190
L++ +L L + K D A+D E R++ L+QI+ ED +++D + V+
Sbjct: 7 LIQTEAELDILVRRAKQTDAVALDTEFVWERTYYPQLGLIQIALSDEDCYLIDPVA--VK 64
Query: 191 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYL 249
L ++ D K++H A +D+ LQR G N+FDT A+ L SL L
Sbjct: 65 NLQALGQLLSDRGVVKILHDAPQDLAILQRATGATPQNIFDTRLAAGFSNLPATLSLGNL 124
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL-----LYIYDIMKIKLSSMPKE 304
+ + +KE +W RPL +E +RYA +D YL L + I+ K+ S +E
Sbjct: 125 VKELLDIELSKEETRTNWLQRPLTEEQVRYALDDVRYLRAVRVLLLSRIIGPKIRSWLQE 184
Query: 305 SEN--------SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVV 356
N TP E Y R ++ L+ LA++
Sbjct: 185 DLNLLNNPATYCGTPADERYLRIRNI-----------------------GTLDRPGLAIL 221
Query: 357 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVL 416
L WRD +A+ D G+++ + L+EIA++ P T +L+ + + + +Y ++
Sbjct: 222 MNLTTWRDGMAKKHDRPRGHIIKDTILLEIARKKPRTLLELKNGSEISDNAMNKYGQNIV 281
Query: 417 SIIKNSMQ 424
+II +++
Sbjct: 282 AIIDTTLK 289
>gi|289207511|ref|YP_003459577.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
gi|288943142|gb|ADC70841.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
Length = 392
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 127/276 (46%), Gaps = 27/276 (9%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+E + L+ + D A+D E + +++ CL+Q +T + +D L+L +Q
Sbjct: 6 LIETPEALQAFLDSIAGTDWIALDTEFLREKTYYPQLCLVQAATLDQLACIDPLRLDIQ- 64
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
L +F+DP KV H A +D+ L R+ G +FDT A+ +L E+ L+
Sbjct: 65 --QLAPLFRDPGITKVFHAASQDMELLYRELGFVPSPVFDTQIAASMLGYGEQVGYANLV 122
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS------MPKE 304
+ +K DW RPL E +RYA +D +L +++ + +L + + E
Sbjct: 123 KTVLERDLDKSQTRTDWSRRPLSAEQIRYAADDVRHLATLFNRLLHELDTHDRMHWLRPE 182
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
E P LYE + E S+ + G++ L ++ V+ + WR+
Sbjct: 183 MEALSNP-------------ALYEPD--PEQSWQRVSGVK--RLKPKERGVLKCVAAWRE 225
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
A++ + +VL + L++IA++ P A LR L
Sbjct: 226 RTAQSSNRPRRWVLSDDLLLDIARRTPADAQGLREL 261
>gi|225021280|ref|ZP_03710472.1| hypothetical protein CORMATOL_01292 [Corynebacterium matruchotii
ATCC 33806]
gi|224946013|gb|EEG27222.1| hypothetical protein CORMATOL_01292 [Corynebacterium matruchotii
ATCC 33806]
Length = 408
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 113/257 (43%), Gaps = 35/257 (13%)
Query: 153 AVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKK------ 206
AVD E + CL+QI R G L +V DP
Sbjct: 40 AVDTERVSGFRYHNRVCLLQIR-------------RAGAGTMLIDVESDPQATTDFMGRV 86
Query: 207 ------VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 260
V+H A D+ +L++ + +FDT A R L R +L ++ ++ GV K
Sbjct: 87 LADTGWVVHAATSDLPYLEQ-LRLRPAQLFDTELAGRFLGFHRVNLAAMVEYYLGVRLRK 145
Query: 261 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSY 320
+ DW RP+P E L YA D YLL + D M+ +L+ +P E
Sbjct: 146 NHGGEDWSRRPIPSEWLDYAALDVEYLLPLADAMRSELT--------QQSPKDEWVAEEC 197
Query: 321 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 380
D ++Y + S+ + G++ ++QL V L + R+ +A+A D + +LP+
Sbjct: 198 DYLTRVYRGYSPTPKSWEDLKGVRRLR-TSKQLQVARWLWQVREKLAQASDTAVSRLLPD 256
Query: 381 RTLIEIAKQLPTTAAKL 397
+TL+ +A +LPTT K+
Sbjct: 257 KTLVALATELPTTVPKV 273
>gi|195328899|ref|XP_002031149.1| GM25820 [Drosophila sechellia]
gi|194120092|gb|EDW42135.1| GM25820 [Drosophila sechellia]
Length = 355
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 101/196 (51%), Gaps = 20/196 (10%)
Query: 33 KKKGDIVGGSAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNNANQ-PF-------- 83
+ +G GS + R S F I +PQ +++ V+N+ Q PF
Sbjct: 157 QTQGTPKAGSWNRTTGTPQRNMVSTRLFTAKNIIRPQTQFREPVDNSAQNPFVPRLKEKP 216
Query: 84 ----QHVWLQKSEDSGR---FIHPLDNLSVLDF--VDKDIGDVEAVKPPSLEQTPFKLVE 134
L + +D+G ++HP + +L F + + + V P + +T +V+
Sbjct: 217 NSLKPLALLPEYDDAGNVQSYLHPYE-FELLKFEPPTEQLQKQKPVLPALMAETELMVVD 275
Query: 135 EVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPY 194
V+ LK+ +L+ + A+D+EH+ YR+F+G+TCL+Q+STR++D++ DTL LR +
Sbjct: 276 TVEKLKQALEELRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKDYIFDTLILRDDMH-I 334
Query: 195 LREVFKDPTKKKVMHG 210
L V DP K K++HG
Sbjct: 335 LNLVLTDPKKLKILHG 350
>gi|85860425|ref|YP_462627.1| ribonuclease D [Syntrophus aciditrophicus SB]
gi|85723516|gb|ABC78459.1| ribonuclease D [Syntrophus aciditrophicus SB]
Length = 339
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 125/282 (44%), Gaps = 16/282 (5%)
Query: 120 VKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTED 179
V + + + V+ ++E L S ++D E++ F CL+Q+
Sbjct: 46 VSSADVIENSWMWVDSEAKVEEAREDLDSSSLISLDTEYDSMHYFREKLCLVQVRASKRT 105
Query: 180 FVVDTLK-LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 238
+V D + +Q +LR F DP KV H D DI L+RD+G N+FDT +A+ +
Sbjct: 106 YVFDPFNGIDLQ---FLRPYFADPRLLKVTHAGDNDIRILKRDYGFEFRNIFDTHRAAHM 162
Query: 239 LKLERNSLEYLLHHFCGVNA--NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296
L + +L ++ + GV K+ Q + W RPL + LRYA +DT YL +Y +
Sbjct: 163 LGSQYLALSSIIEQYLGVEIEKTKKMQRSKWEARPLSEGQLRYAVQDTAYLADLYRHLNE 222
Query: 297 KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVV 356
KL S+ E + V S + ++ L + I G A L A +
Sbjct: 223 KL-SLKGMQERARKVFENVAAVS-------WREKTLDLLGHRRISGY--ASLTADSKGRL 272
Query: 357 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 398
L WR AR + + +LP+ L+ +++ + +LR
Sbjct: 273 KKLYRWRFHKARQTNRAMFLILPDSALLSLSEGNWQSVEELR 314
>gi|223995113|ref|XP_002287240.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976356|gb|EED94683.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 743
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 102/222 (45%), Gaps = 43/222 (19%)
Query: 116 DVEAVKPPSLEQTP------FKLVEEVKDLKEL-----------AAKLKSVDEFAVDLE- 157
D+EA+K L P + LV+ V LK+ A S++E + DLE
Sbjct: 241 DMEALKATDLSSVPTPIGVPWMLVDSVAKLKQCINEIVHGIDNDGASKVSLNELSFDLEM 300
Query: 158 HNQYRSFL----------GL-TCLMQISTRT--EDFVVDTLKLRVQ--VGPYLREVFKDP 202
HN GL TCL+Q++ T +D+V+D L V + YL +F DP
Sbjct: 301 HNHGSGSGGGSSKFPQKGGLRTCLIQMTANTVVKDYVIDPLAPNVWDAIPHYLGPLFSDP 360
Query: 203 TKKKVMHG-ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS---LEYLLHHF---CG 255
K+ HG D L RDFGI + N FDT +AS VL + L L H+ C
Sbjct: 361 RIVKIGHGIGGMDTTSLHRDFGIVIVNAFDTFEASAVLLHGKKGGLGLAKLCKHYGLPCW 420
Query: 256 ---VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
N ++Q +DWR RPL D+ L Y R D +L+ I ++
Sbjct: 421 QDYANLKSQFQCSDWRKRPLCDDALEYGRYDVRFLITIRQLL 462
>gi|254480593|ref|ZP_05093840.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
gi|214039176|gb|EEB79836.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
Length = 373
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 134/298 (44%), Gaps = 24/298 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQI------STRTEDFVVD 183
++LVE L EL D VD E + +F L+Q+ +T T +++D
Sbjct: 3 WQLVESDAALAELMNAAIGCDAVMVDTEFMRRNTFYPQVALVQLCFCGGGATGTA-WMID 61
Query: 184 TLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLER 243
LK+ P L +FKD K++H A D+ QR G+ +FDT +A+ ++ L+
Sbjct: 62 PLKIE-DPAP-LANLFKDAGVIKILHSASEDLEVFQRWLGVLPLPLFDTQKAAALVGLD- 118
Query: 244 NSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
L Y ++ C + K +DW RPL + YA +D +LL Y I+ + SM
Sbjct: 119 FGLGYRSMVLELCNEDLPKGETRSDWLQRPLTESQCHYAAQDVIWLLDAYQIIAERCHSM 178
Query: 302 PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCE 361
+ V + + CR L + S Y I G L ++LA + + E
Sbjct: 179 QRYD--------WVLEDGEEACRGL--ASMSSAQYYRRIKG--AWKLEPRELAALIAISE 226
Query: 362 WRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
WR+ AR D+ +++ ++ +++A+ P LR ++ S + RY +L ++
Sbjct: 227 WRERTAREKDKPRSWIIDDKACLQLAQVGPANMNDLRSKIEMHGSSMRRYGETLLDLV 284
>gi|13476899|ref|NP_108468.1| ribonuclease D [Mesorhizobium loti MAFF303099]
gi|14027660|dbj|BAB53929.1| ribonuclease D [Mesorhizobium loti MAFF303099]
Length = 383
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 126/272 (46%), Gaps = 28/272 (10%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
K+L+ + A + D VD E + +F + CL+Q++ ++D L + + P+ R
Sbjct: 8 KELETVLAAFEKSDFVTVDTEFIRETTFWPILCLIQMAAPGVTALIDPLSPDINLAPFFR 67
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQASRVLKL-ERNSLEYLL 250
+ + KV H A +DI + ++L ++ FDT A+ V + S + L+
Sbjct: 68 -LMANEAVVKVFHAARQDI-----EIIVHLGDLVPHPVFDTQVAAMVCGFGDSVSYDQLV 121
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G +K + DWR RPL D+ L YA D +L+ +Y + +L+ EN
Sbjct: 122 QRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHLSAELA-----RENRAH 176
Query: 311 PLTEVYKRSYDVC--RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
L E DV R+ Y+ E+++ L+ Q+LA+V + WR+ AR
Sbjct: 177 WLNE----EMDVLTSRETYDPH--PEDAWKR---LKMRLRKPQELAIVQAVAAWREREAR 227
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
D G VL + + E+A+Q P AA L +L
Sbjct: 228 ERDVPRGRVLKDDAIYEVAQQAPRDAAALAKL 259
>gi|395779818|ref|ZP_10460287.1| ribonuclease D [Bartonella washoensis 085-0475]
gi|395420193|gb|EJF86478.1| ribonuclease D [Bartonella washoensis 085-0475]
Length = 384
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 123/272 (45%), Gaps = 14/272 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
KL+ + KDL+ L++ D VD E + +F CL+Q+++ ++D + +
Sbjct: 2 MKLITQTKDLETALTALRTSDFVTVDTEFIRETTFWPQLCLIQLASPDTTVLIDPIASDI 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEY 248
+ P+ ++ D KV H A +DI + GI +FDT A + + S +
Sbjct: 62 DLKPFF-DLMADKKIVKVFHAARQDIETIYHLGGIIPYPLFDTQIAGSICGFGDSISYDQ 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
++ G + +K + DW RPL ++ L YA D YL IY ++K +L +
Sbjct: 121 IVQRCTGHHIDKSSRFTDWSCRPLSEKQLLYALADVTYLRDIYLLLKKQLEKNKRTHWMD 180
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
D + ++YD + E+ + L ++LA++ + WR+ AR
Sbjct: 181 DEIAILLNPKTYD----------MPEDEAWKKVKGKVKKL--RELAILQKIAAWREREAR 228
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ +++ + LIEIA Q PT + L RL
Sbjct: 229 KHNVPRRHIMKDEHLIEIAIQQPTDESALNRL 260
>gi|156100329|ref|XP_001615892.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax
Sal-1]
gi|148804766|gb|EDL46165.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax]
Length = 1114
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 3/178 (1%)
Query: 122 PPSLEQTPFKLVEEVKDLKELAAKLKS-VDEFAVDLEHNQYRSFLGLTCLMQISTRTEDF 180
P + + K+V +L ++ +K+ + ++ L N ++ G T L+ + T D+
Sbjct: 453 PVQVNEKECKMVSSEGELIDMVNTIKAGCTKMSLSLVMNYKSTYRGFTSLILVGTEECDY 512
Query: 181 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 240
++D L + Q+ L EV DP K+++ + I +QRDF IY N+ D S L
Sbjct: 513 ILDALHIFEQMHA-LNEVTTDPNILKIVYKSKSIIPVMQRDFSIYFVNIIDISVCSDFLN 571
Query: 241 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298
+ RNSL +L+H++ V+ N Q + RPL + ++ R HYL Y+++ +K L
Sbjct: 572 V-RNSLAFLVHNYFHVSVNSAGQGFNALTRPLSTDAVQNLRMPFHYLYYLFEYVKTDL 628
>gi|261221947|ref|ZP_05936228.1| ribonuclease D [Brucella ceti B1/94]
gi|265997910|ref|ZP_06110467.1| ribonuclease D [Brucella ceti M490/95/1]
gi|260920531|gb|EEX87184.1| ribonuclease D [Brucella ceti B1/94]
gi|262552378|gb|EEZ08368.1| ribonuclease D [Brucella ceti M490/95/1]
Length = 385
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 24/277 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+L+ + L+E + L D VD E + +F CL+Q+++ +VD L +
Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQASRVLKL-ER 243
+ P+ R + D KV H A +DI + +L N+ FDT A+ V +
Sbjct: 61 DLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVAAMVCGFGDA 114
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
S + L+ G + +K + DWR RPL D+ L YA D YL IY +K +L +
Sbjct: 115 ISYDQLMQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGR 174
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
++ +++YD L ++++ + L +LA+V + WR
Sbjct: 175 SEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELAIVQAVAAWR 222
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 223 EREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|183219597|ref|YP_001837593.1| putative ribonuclease D [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189909736|ref|YP_001961291.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167774412|gb|ABZ92713.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167778019|gb|ABZ96317.1| Putative ribonuclease D (RNase D) [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 406
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 93/164 (56%), Gaps = 6/164 (3%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLR- 188
+ LV+ K L L+ ++D E + Y ++ CL+QI++ +++++D LK+
Sbjct: 7 YILVDTAKALDLALINLRQSKIMSIDTESSGYYTYYPKVCLIQINSNGKNYLIDPLKITN 66
Query: 189 -VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLE 247
+GP +F+DP K+ H A DI L+RDFG N DT +SR+L LE++SL
Sbjct: 67 LSALGP----LFEDPNILKIFHSAQDDIKALKRDFGFKFVNTADTMISSRLLSLEQSSLS 122
Query: 248 YLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 291
+++ H+ V +K Q ++W +RPL + L+YA DT YL I+
Sbjct: 123 FVVEHYHKVTLSKVEQKSNWEIRPLQKQQLKYAALDTAYLESIW 166
>gi|403714102|ref|ZP_10940065.1| ribonuclease D [Kineosphaera limosa NBRC 100340]
gi|403211772|dbj|GAB94748.1| ribonuclease D [Kineosphaera limosa NBRC 100340]
Length = 434
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 101/226 (44%), Gaps = 28/226 (12%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
++H A +D+ L + G+ +FDT R+ L R L +L H+ GV KE+ D
Sbjct: 127 ILHAATQDLPCLA-EVGMRPQQLFDTELGGRLAGLPRVGLSAVLEHYLGVRLAKEHSAVD 185
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP+ LRYA D L + D + L K ++ RQ
Sbjct: 186 WSTRPLPEPWLRYAALDVELLAELRDAVAADLREQGK----------------WEWARQE 229
Query: 327 YEKELLS-------ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 379
+E LLS + + G+ + + +V L RD IAR D + G VLP
Sbjct: 230 FEA-LLSFTGPPPRVDPWRRTSGIHKVR-GRRNVGIVRDLWLARDQIARTRDIAAGRVLP 287
Query: 380 NRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQN 425
+ L+++A+ P T+A L + S+H + RY L+ I+ ++
Sbjct: 288 DAVLLQLAQATPRTSADLPSI--SRHKAVGRYGETWLNAIRTGLER 331
>gi|119717898|ref|YP_924863.1| 3'-5' exonuclease [Nocardioides sp. JS614]
gi|119538559|gb|ABL83176.1| 3'-5' exonuclease [Nocardioides sp. JS614]
Length = 442
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 122/275 (44%), Gaps = 19/275 (6%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKS-VDEFAVDLEHNQYRSFLGLTCLMQISTR-TEDFVV 182
L +T ++V+ L E+ ++ + A+D E + L+Q+ + F+V
Sbjct: 38 LRETLPRVVDTEAGLAEVCERIAAGTGPVAIDAERASGYRYSSRAYLIQLRREGSGTFLV 97
Query: 183 DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE 242
D + + P L+E + + ++H A +D+ L + G+ +FDT A R+L
Sbjct: 98 DPIPFVIL--PQLQEALEG--TEWILHAATQDLPCLA-EVGLLPSRLFDTELAGRLLGYP 152
Query: 243 RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 302
R L L+ G KE+ DW RPLP+ L YA D L + D++ +L +
Sbjct: 153 RVGLATLVETLLGSRLAKEHSAVDWSTRPLPEPWLEYAALDVEVLAELRDLLADELETAG 212
Query: 303 KESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEW 362
K E ++ +D R + E + +++ GL + LA V L E
Sbjct: 213 K---------AEWARQEFDALRSFVQAERV--DAWRRTSGLHRVR-GRRALAAVRALWET 260
Query: 363 RDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
RD IA D + G +LP+ ++ A+ +PT A L
Sbjct: 261 RDEIAENRDVTPGRILPDSAIVAAAQAMPTDRATL 295
>gi|453382611|dbj|GAC82906.1| ribonuclease D [Gordonia paraffinivorans NBRC 108238]
Length = 429
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 122/274 (44%), Gaps = 16/274 (5%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+QI R F++D + + P + E + P + V+H
Sbjct: 48 IAVDTERASGYRYSQRAYLIQIKRRGAGSFLLDPIADPDALAPVI-EALRGP--EWVLHA 104
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L R+ G ++DT A R+L L + +L ++ F G+ K + ADW R
Sbjct: 105 ADQDLPCL-RELGFVCVELYDTELAGRLLGLSKVNLAAMVAQFLGLGLVKGHGAADWSRR 163
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLPD+ L YA D L+ + D M L K+ + + +Y + R
Sbjct: 164 PLPDDWLNYAALDVEVLVELRDAMDAALVEAGKDRWARE-------EFAYILSRPPAPPR 216
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+I+ ++ +A+ LA V L R+ +A D + G VLP+ ++ A
Sbjct: 217 TDRWRKTSNIHTVK----SARALAAVRELWTAREQLAERRDIAPGRVLPDAAIVNAATAD 272
Query: 391 PTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 424
P T+A+L RL R G L+ +K + +
Sbjct: 273 PKTSAELTRLPVFGGPRQRRQAGIWLNALKRARE 306
>gi|229815608|ref|ZP_04445935.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
13280]
gi|229808838|gb|EEP44613.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
13280]
Length = 377
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 116/266 (43%), Gaps = 20/266 (7%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
+DL + ++ A+D E + +++ CL+Q++T E V+D L + +GP L
Sbjct: 7 EDLTAFCNRARAFSAIAIDTEFLREKTYHAKLCLVQVATPDECVVIDPLAID-DLGP-LA 64
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFC 254
E+ D KV H +D+ L G +FDT A+ L ER Y L+ FC
Sbjct: 65 ELMTDVDTLKVFHACSQDMEVLCHALGSVPAPIFDTQVAAGFLG-ERAQCSYHNLVSTFC 123
Query: 255 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD--TPL 312
GV+ K DW RPL + + YA +D YL+ Y +++ KL S+ + + D PL
Sbjct: 124 GVSLPKTESLTDWSRRPLSPKQIEYALDDVRYLIDAYRVIESKLHSLGRTAWVRDEIRPL 183
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
+ D ++ + + +QLAV L WR+ A D
Sbjct: 184 ADPAHYRSD-----------PRAAFKRVKRVNAC--TRRQLAVARELASWREQRAETRDI 230
Query: 373 STGYVLPNRTLIEIAKQLPTTAAKLR 398
+V+ + L+ + K+ P T R
Sbjct: 231 PRKWVMSDEVLLALCKRAPQTVEDFR 256
>gi|118340523|gb|ABK80573.1| putative ribonuclease D [uncultured marine Nitrospinaceae
bacterium]
Length = 386
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 159/384 (41%), Gaps = 63/384 (16%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
LK ++S D VD E + R++ T L+Q+ +D + L + P L E+
Sbjct: 9 LKTFCENIQSADVLVVDTEFVRERTYFHRTGLIQVGGGEHFAAIDPIALP-DMTPLL-EL 66
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHFCGVN 257
KDPTK KV H A +D+ L R G + +FDT A+ ++ + S +++ G
Sbjct: 67 LKDPTKVKVFHAARQDLEILVRFCGQVIPPIFDTQIAAALVGWGTQISFAKIVYKALGKK 126
Query: 258 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK------ESENSDTP 311
+K DW RPL D + YA +D YL+ +Y+ + +L M + E + P
Sbjct: 127 IHKSETYTDWCRRPLSDSQIEYAIDDVRYLMPVYNKLIERLKKMGRLDWVQGEVNAWEDP 186
Query: 312 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 371
T Y ++ I L+ L + LAV+ + WR+ A D
Sbjct: 187 KTFALPDPY--------------QRFMKIKNLR--SLRPRNLAVLQEIAAWREGEAVKRD 230
Query: 372 ESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEV 431
++ + TL+EIA++ P A L + + + G +LS I+ +M+
Sbjct: 231 CLAKAIIRDETLLEIARKAPRDAKTLSGIRGFYQKELNKGGGSILSAIERAME------- 283
Query: 432 IAQKLKEERMEVASEETEVLVLDTSSNLKIPNV-GRESVDGVDALVGTTMPHPPAYTQLK 490
L S +++P G + GV+ L+ AY Q++
Sbjct: 284 ---------------------LPESDLVELPESNGHATTRGVEELLS-------AYVQIR 315
Query: 491 QEPPKVGSSVAELDRNGLGSF-AH 513
E K+ SV DR + SF AH
Sbjct: 316 SEELKIEPSVLA-DRKQIHSFVAH 338
>gi|62289703|ref|YP_221496.1| RND, ribonuclease D [Brucella abortus bv. 1 str. 9-941]
gi|148560669|ref|YP_001258731.1| ribonuclease D [Brucella ovis ATCC 25840]
gi|163843022|ref|YP_001627426.1| ribonuclease D [Brucella suis ATCC 23445]
gi|189023953|ref|YP_001934721.1| Rnd, ribonuclease D [Brucella abortus S19]
gi|225627251|ref|ZP_03785288.1| ribonuclease D [Brucella ceti str. Cudo]
gi|237815192|ref|ZP_04594190.1| ribonuclease D [Brucella abortus str. 2308 A]
gi|256369183|ref|YP_003106691.1| ribonuclease D [Brucella microti CCM 4915]
gi|260545541|ref|ZP_05821282.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260757729|ref|ZP_05870077.1| ribonuclease D [Brucella abortus bv. 4 str. 292]
gi|260761554|ref|ZP_05873897.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
gi|260883537|ref|ZP_05895151.1| ribonuclease D [Brucella abortus bv. 9 str. C68]
gi|261213756|ref|ZP_05928037.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya]
gi|261218885|ref|ZP_05933166.1| ribonuclease D [Brucella ceti M13/05/1]
gi|261314491|ref|ZP_05953688.1| ribonuclease D [Brucella pinnipedialis M163/99/10]
gi|261317409|ref|ZP_05956606.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|261321616|ref|ZP_05960813.1| ribonuclease D [Brucella ceti M644/93/1]
gi|261324867|ref|ZP_05964064.1| ribonuclease D [Brucella neotomae 5K33]
gi|261752075|ref|ZP_05995784.1| ribonuclease D [Brucella suis bv. 5 str. 513]
gi|261757962|ref|ZP_06001671.1| ribonuclease D [Brucella sp. F5/99]
gi|265988446|ref|ZP_06101003.1| ribonuclease D [Brucella pinnipedialis M292/94/1]
gi|297248110|ref|ZP_06931828.1| ribonuclease D [Brucella abortus bv. 5 str. B3196]
gi|340790381|ref|YP_004755846.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|376273517|ref|YP_005152095.1| ribonuclease D [Brucella abortus A13334]
gi|423167117|ref|ZP_17153820.1| ribonuclease D [Brucella abortus bv. 1 str. NI435a]
gi|423170507|ref|ZP_17157182.1| ribonuclease D [Brucella abortus bv. 1 str. NI474]
gi|423173412|ref|ZP_17160083.1| ribonuclease D [Brucella abortus bv. 1 str. NI486]
gi|423177302|ref|ZP_17163948.1| ribonuclease D [Brucella abortus bv. 1 str. NI488]
gi|423179938|ref|ZP_17166579.1| ribonuclease D [Brucella abortus bv. 1 str. NI010]
gi|423183070|ref|ZP_17169707.1| ribonuclease D [Brucella abortus bv. 1 str. NI016]
gi|423185988|ref|ZP_17172602.1| ribonuclease D [Brucella abortus bv. 1 str. NI021]
gi|423189128|ref|ZP_17175738.1| ribonuclease D [Brucella abortus bv. 1 str. NI259]
gi|62195835|gb|AAX74135.1| Rnd, ribonuclease D [Brucella abortus bv. 1 str. 9-941]
gi|148371926|gb|ABQ61905.1| ribonuclease D [Brucella ovis ATCC 25840]
gi|163673745|gb|ABY37856.1| ribonuclease D [Brucella suis ATCC 23445]
gi|189019525|gb|ACD72247.1| Rnd, ribonuclease D [Brucella abortus S19]
gi|225617256|gb|EEH14301.1| ribonuclease D [Brucella ceti str. Cudo]
gi|237790029|gb|EEP64239.1| ribonuclease D [Brucella abortus str. 2308 A]
gi|255999343|gb|ACU47742.1| ribonuclease D [Brucella microti CCM 4915]
gi|260096948|gb|EEW80823.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260668047|gb|EEX54987.1| ribonuclease D [Brucella abortus bv. 4 str. 292]
gi|260671986|gb|EEX58807.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
gi|260873065|gb|EEX80134.1| ribonuclease D [Brucella abortus bv. 9 str. C68]
gi|260915363|gb|EEX82224.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya]
gi|260923974|gb|EEX90542.1| ribonuclease D [Brucella ceti M13/05/1]
gi|261294306|gb|EEX97802.1| ribonuclease D [Brucella ceti M644/93/1]
gi|261296632|gb|EEY00129.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|261300847|gb|EEY04344.1| ribonuclease D [Brucella neotomae 5K33]
gi|261303517|gb|EEY07014.1| ribonuclease D [Brucella pinnipedialis M163/99/10]
gi|261737946|gb|EEY25942.1| ribonuclease D [Brucella sp. F5/99]
gi|261741828|gb|EEY29754.1| ribonuclease D [Brucella suis bv. 5 str. 513]
gi|264660643|gb|EEZ30904.1| ribonuclease D [Brucella pinnipedialis M292/94/1]
gi|297175279|gb|EFH34626.1| ribonuclease D [Brucella abortus bv. 5 str. B3196]
gi|340558840|gb|AEK54078.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|363401123|gb|AEW18093.1| ribonuclease D [Brucella abortus A13334]
gi|374540555|gb|EHR12055.1| ribonuclease D [Brucella abortus bv. 1 str. NI474]
gi|374542005|gb|EHR13495.1| ribonuclease D [Brucella abortus bv. 1 str. NI435a]
gi|374542741|gb|EHR14228.1| ribonuclease D [Brucella abortus bv. 1 str. NI486]
gi|374549783|gb|EHR21225.1| ribonuclease D [Brucella abortus bv. 1 str. NI010]
gi|374550302|gb|EHR21741.1| ribonuclease D [Brucella abortus bv. 1 str. NI016]
gi|374550586|gb|EHR22022.1| ribonuclease D [Brucella abortus bv. 1 str. NI488]
gi|374558786|gb|EHR30179.1| ribonuclease D [Brucella abortus bv. 1 str. NI259]
gi|374559376|gb|EHR30764.1| ribonuclease D [Brucella abortus bv. 1 str. NI021]
Length = 385
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 24/277 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+L+ + L+E + L D VD E + +F CL+Q+++ +VD L +
Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQASRVLKL-ER 243
+ P+ R + D KV H A +DI + +L N+ FDT A+ V +
Sbjct: 61 DLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVAAMVCGFGDA 114
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
S + L+ G + +K + DWR RPL D+ L YA D YL IY +K +L +
Sbjct: 115 ISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGR 174
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
++ +++YD L ++++ + L +LA+V + WR
Sbjct: 175 SEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELAIVQAVAAWR 222
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 223 EREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|260754508|ref|ZP_05866856.1| ribonuclease D [Brucella abortus bv. 6 str. 870]
gi|260674616|gb|EEX61437.1| ribonuclease D [Brucella abortus bv. 6 str. 870]
Length = 384
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 24/277 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+L+ + L+E + L D VD E + +F CL+Q+++ +VD L +
Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQASRVLKL-ER 243
+ P+ R + D KV H A +DI + +L N+ FDT A+ V +
Sbjct: 61 DLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVAAMVCGFGDA 114
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
S + L+ G + +K + DWR RPL D+ L YA D YL IY +K +L +
Sbjct: 115 ISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGR 174
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
++ +++YD L ++++ + L +LA+V + WR
Sbjct: 175 SEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELAIVQAVAAWR 222
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 223 EREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|152985900|ref|YP_001349451.1| ribonuclease D [Pseudomonas aeruginosa PA7]
gi|150961058|gb|ABR83083.1| ribonuclease D [Pseudomonas aeruginosa PA7]
Length = 393
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 128/277 (46%), Gaps = 23/277 (8%)
Query: 123 PSLEQTPFKLVEEVKDLKELAAKLKSVDEF------AVDLEHNQYRSFLGLTCLMQISTR 176
P L + F E++ +++ A+ + E+ A+D E + +F L+Q+
Sbjct: 12 PHLTKEMFVTAPEIQWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDG 71
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
++++D L +R GP+ E+ +DP KV+H D+ R G +FDT A+
Sbjct: 72 RREWLIDPLLVR-DWGPF-AELLEDPRVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAA 129
Query: 237 RVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L +Y +
Sbjct: 130 AYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLAL 188
Query: 295 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 354
+LS E L + + ++CR+ +E E G L QQLA
Sbjct: 189 DARLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRLRPQQLA 236
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
V+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 237 VLRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 273
>gi|17987486|ref|NP_540120.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M]
gi|225852267|ref|YP_002732500.1| ribonuclease D [Brucella melitensis ATCC 23457]
gi|256264225|ref|ZP_05466757.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
gi|260563791|ref|ZP_05834277.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|265990860|ref|ZP_06103417.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
gi|265994696|ref|ZP_06107253.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
gi|384211128|ref|YP_005600210.1| ribonuclease D [Brucella melitensis M5-90]
gi|384408226|ref|YP_005596847.1| ribonuclease D [Brucella melitensis M28]
gi|384444837|ref|YP_005603556.1| ribonuclease D [Brucella melitensis NI]
gi|17983183|gb|AAL52384.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M]
gi|225640632|gb|ACO00546.1| ribonuclease D [Brucella melitensis ATCC 23457]
gi|260153807|gb|EEW88899.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|262765809|gb|EEZ11598.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
gi|263001644|gb|EEZ14219.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
gi|263094471|gb|EEZ18293.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
gi|326408773|gb|ADZ65838.1| ribonuclease D [Brucella melitensis M28]
gi|326538491|gb|ADZ86706.1| ribonuclease D [Brucella melitensis M5-90]
gi|349742833|gb|AEQ08376.1| ribonuclease D [Brucella melitensis NI]
Length = 385
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 24/277 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+L+ + L+E + L D VD E + +F CL+Q+++ +VD L +
Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQASRVLKL-ER 243
+ P+ R + D KV H A +DI + +L N+ FDT A+ V +
Sbjct: 61 DLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVAAMVCGFGDA 114
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
S + L+ G + +K + DWR RPL D+ L YA D YL IY +K +L +
Sbjct: 115 ISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGR 174
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
++ +++YD L ++++ + L +LA+V + WR
Sbjct: 175 SEWVNEEIAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELAIVQAVAAWR 222
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 223 EREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|265983854|ref|ZP_06096589.1| ribonuclease D [Brucella sp. 83/13]
gi|306837628|ref|ZP_07470498.1| ribonuclease D [Brucella sp. NF 2653]
gi|264662446|gb|EEZ32707.1| ribonuclease D [Brucella sp. 83/13]
gi|306407277|gb|EFM63486.1| ribonuclease D [Brucella sp. NF 2653]
Length = 385
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 24/277 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+L+ + L+E + L D VD E + +F CL+Q+++ +VD L +
Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQASRVLKL-ER 243
+ P+ R + D KV H A +DI + +L N+ FDT A+ V +
Sbjct: 61 DLAPFFR-LMADEKIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVAAMVCGFGDA 114
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
S + L+ G + +K + DWR RPL D+ L YA D YL IY +K +L +
Sbjct: 115 ISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGR 174
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
++ +++YD L ++++ + L +LA+V + WR
Sbjct: 175 SEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELAIVQAVAAWR 222
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 223 EREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|306842001|ref|ZP_07474675.1| ribonuclease D [Brucella sp. BO2]
gi|306843696|ref|ZP_07476296.1| ribonuclease D [Brucella inopinata BO1]
gi|306276006|gb|EFM57715.1| ribonuclease D [Brucella inopinata BO1]
gi|306287929|gb|EFM59346.1| ribonuclease D [Brucella sp. BO2]
Length = 385
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 24/277 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+L+ + L+E + L D VD E + +F CL+Q+++ +VD L +
Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQASRVLKL-ER 243
+ P+ R + D KV H A +DI + +L N+ FDT A+ V +
Sbjct: 61 DLAPFFR-LMADEKIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVAAMVCGFGDA 114
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
S + L+ G + +K + DWR RPL D+ L YA D YL IY +K +L +
Sbjct: 115 ISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGR 174
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
++ +++YD L ++++ + L +LA+V + WR
Sbjct: 175 SEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELAIVQAVAAWR 222
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 223 EREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|359773330|ref|ZP_09276728.1| putative ribonuclease, partial [Gordonia effusa NBRC 100432]
gi|359309527|dbj|GAB19506.1| putative ribonuclease, partial [Gordonia effusa NBRC 100432]
Length = 427
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 137/299 (45%), Gaps = 22/299 (7%)
Query: 108 DFVDKDIGDVEAVKPPSL----EQTPFKLVEEVKDLKELAAKLKS-VDEFAVDLEHNQYR 162
D + + GDVE ++P L + P L++ D + AA+L + AVD E
Sbjct: 14 DTAEGNTGDVEVIEPTPLPAPRDGIPAVLLQP-GDFADAAARLATGTGPIAVDTERASGY 72
Query: 163 SFLGLTCLMQIS-TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRD 221
+ L+Q+ T + F++D ++ +GP + E P + ++H AD+D+ L R+
Sbjct: 73 KYSARAYLIQLRRTGSGSFLIDPIEHPEALGPII-EALDGP--EWILHAADQDLPCL-RE 128
Query: 222 FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAR 281
+ ++DT A R+L L R +L ++ HF G+ K + ADW RPLP + L YA
Sbjct: 129 LDFHCAALYDTELAGRLLGLPRVNLAAMIAHFLGLGLAKGHGAADWSRRPLPADWLNYAA 188
Query: 282 EDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIY 341
D L+ + + + +L++ K S+ + V R R + S +H
Sbjct: 189 LDVEVLVELREAIADELAATGK-SDWAAQEFDYVLHRPPSPPR----TDRWRRTSNIHSI 243
Query: 342 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
Q + LA V L R+ +A D + G VLP+ ++ A P + ++L L
Sbjct: 244 KTQ------RGLATVRELWTAREDMAARRDIAPGRVLPDSAIVTAATADPKSMSELTGL 296
>gi|328955332|ref|YP_004372665.1| ribonuclease D [Coriobacterium glomerans PW2]
gi|328455656|gb|AEB06850.1| ribonuclease D [Coriobacterium glomerans PW2]
Length = 377
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 121/266 (45%), Gaps = 20/266 (7%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L L +S A+D E + R++ CL+Q++T +VD L++ + P L +
Sbjct: 9 LAALCDAARSFSIVAIDTEFLRERTYHPRLCLVQVATPEVSALVDPLEIE-DLSP-LAAL 66
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGV 256
D +K+ H +D+ L + +FDT A+ L ER + Y L+ FCGV
Sbjct: 67 MADEGTRKIFHACSQDMEVLLNALDVLPNPIFDTQVAAAFLG-ERVQMSYDGLVKAFCGV 125
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD--TPLTE 314
+ K DW RPL E + YA +D YL+ Y++M +L + S D PL +
Sbjct: 126 SLPKTASLTDWSHRPLTAEQMDYAEDDVRYLICAYEVMAERLEQRGRMSWALDEMRPLAD 185
Query: 315 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 374
+D R+L K + S +QL V L WR+ A + D
Sbjct: 186 ESHYRHD--RRLAYKRVKRIGS-----------CTRRQLGVARELAAWREGRAESHDIPR 232
Query: 375 GYVLPNRTLIEIAKQLPTTAAKLRRL 400
+++ + L+ +AK+ P + A+LR++
Sbjct: 233 KWIMSDEVLLALAKRAPHSVAELRQV 258
>gi|297626438|ref|YP_003688201.1| ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922203|emb|CBL56771.1| Ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 445
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 144/318 (45%), Gaps = 34/318 (10%)
Query: 110 VDKDIGDVEAVKP----PSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFL 165
+D+D G P P L +P L ++ L A+D E Q +
Sbjct: 19 IDQDTGMPILAMPHEGLPELVDSPEALTRCIEALA------SGTGPVAIDTERAQSFRYT 72
Query: 166 GLTCLMQIS-TRTEDFVVDTLKLRVQVGPY-----LREVFKDPTKKKVMHGADRDIVWLQ 219
L+Q T + +++D + G LRE + + ++H A +D+ L
Sbjct: 73 ARAYLLQFRRTDSGTWLIDPQAFQPSDGSLADFSALREAIA--SAEWIIHAATQDLPCLV 130
Query: 220 RDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRY 279
+ G+Y +FDT A R+L R SL ++ GV+ KE+ ADW RPLP + + Y
Sbjct: 131 -EIGLYPSRLFDTELAGRLLGFPRVSLGTMIEQHFGVHLLKEHSAADWSRRPLPPDWIAY 189
Query: 280 AREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLH 339
A D L+ + +++ +L + K+ E +D E + DV R ++ + + H
Sbjct: 190 AALDVELLIELRNLVADELVAAGKK-EWAD----EEFAHLVDVYRHPQQR---PGDPWRH 241
Query: 340 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT------T 393
G + + LA+V L E RD IAR D++ G ++P++ + E+A ++ T
Sbjct: 242 TSGSHHVR-SRRGLALVRALWEQRDEIARELDKAPGKIVPDKAISELASEVTKDSEKMPT 300
Query: 394 AAKLRRLLKSKHSYIERY 411
A + +++ + +Y +RY
Sbjct: 301 ARDMNKIMGFRRTYAKRY 318
>gi|82699633|ref|YP_414207.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
gi|82615734|emb|CAJ10730.1| HRDC domain:3'-5' exonuclease:Ribonuclease D [Brucella melitensis
biovar Abortus 2308]
Length = 385
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 24/277 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+L+ + L+E + L D VD E + +F CL+Q+++ +VD L +
Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDELAPGL 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQASRVLKL-ER 243
+ P+ R + D KV H A +DI + +L N+ FDT A+ V +
Sbjct: 61 DLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVAAMVCGFGDA 114
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
S + L+ G + +K + DWR RPL D+ L YA D YL IY +K +L +
Sbjct: 115 ISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGR 174
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
++ +++YD L ++++ + L +LA+V + WR
Sbjct: 175 SEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELAIVQAVAAWR 222
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 223 EREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|302335597|ref|YP_003800804.1| ribonuclease D [Olsenella uli DSM 7084]
gi|301319437|gb|ADK67924.1| ribonuclease D [Olsenella uli DSM 7084]
Length = 376
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 112/257 (43%), Gaps = 28/257 (10%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
A+D E + R++ CL+Q +T E +D + + + P R + D + KV H
Sbjct: 22 LAIDTEFLRERTYFPRLCLIQAATPDESAAIDPILID-DLSPLAR-LLTDESITKVFHAC 79
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRV 269
+D+ + +FDT A+ L R + Y L+ CGV K DW
Sbjct: 80 SQDLEVIYDALHCVPGPIFDTQLAAAFLG-HRQQIGYGALVDACCGVRLPKAESLTDWSR 138
Query: 270 RPLPDEMLRYAREDTHYLLYIYD------IMKIKLSSMPKESENSDTPLTEVYKRSYDVC 323
RPL E L YA +D YL IYD IM+ +L + E +P + R
Sbjct: 139 RPLDAEQLAYAEDDVRYLPGIYDQMMAELIMRDRLPWLAPEMAELVSPAH--FMR----- 191
Query: 324 RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 383
+ E +YLH+ + L +QLA+ +C WR+ A D +V+ + +
Sbjct: 192 --------VPEEAYLHLR--RSGSLTRRQLAIAREVCAWRESAAARRDVPRKWVVSDELI 241
Query: 384 IEIAKQLPTTAAKLRRL 400
+E K+ P T +LRR+
Sbjct: 242 VEACKRAPRTLDRLRRI 258
>gi|441508350|ref|ZP_20990274.1| putative ribonuclease [Gordonia aichiensis NBRC 108223]
gi|441447378|dbj|GAC48235.1| putative ribonuclease [Gordonia aichiensis NBRC 108223]
Length = 432
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 114/250 (45%), Gaps = 16/250 (6%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQIS-TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+Q+ T F++D + + P + E P + V+H
Sbjct: 57 IAVDTERASGYRYSQRAYLIQLRRTGAGSFLLDPISEPEALAPVI-EALDGP--EWVLHA 113
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L R+ G + +FDT A R+L + +L ++ G+ K + ADW R
Sbjct: 114 ADQDLPCL-RELGFHCETVFDTELAGRLLGEPKVNLAAMVATHLGLGLQKGHGAADWSRR 172
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLPD+ L YA D L+ + D ++ L K+ E + V R R +
Sbjct: 173 PLPDDWLNYAALDVEVLVELRDAVQAALIEAGKD-EWARQEFQHVLDRPAPPPR----ID 227
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+ + +H N + LA V LC R+ +A+ D + G +LP+ ++ A +
Sbjct: 228 RWRKTANVHTVK------NGRSLAAVRELCSAREELAQRRDVAPGRILPDSAIVTAANAM 281
Query: 391 PTTAAKLRRL 400
PT+ A+L RL
Sbjct: 282 PTSVAELTRL 291
>gi|311742288|ref|ZP_07716097.1| ribonuclease D [Aeromicrobium marinum DSM 15272]
gi|311313916|gb|EFQ83824.1| ribonuclease D [Aeromicrobium marinum DSM 15272]
Length = 411
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 105/237 (44%), Gaps = 27/237 (11%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
++H A +D+ L + G+ +FDT A R+L L R L L+ HF G + KE+ AD
Sbjct: 104 ILHAATQDLPCLA-EIGLRPRALFDTEHAGRLLNLPRVGLATLVEHFLGRSLAKEHSAAD 162
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP+ L YA D L+ + D++ D L E KR + Q
Sbjct: 163 WSTRPLPEPWLVYAALDVEVLVELRDLL--------------DAELREAGKREW--AAQD 206
Query: 327 YEKELLS-------ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 379
+E LLS + G+ + LA+V L RD IA D + G +LP
Sbjct: 207 FEA-LLSFTGPPEKTERWRRTSGMHRVR-GRRTLALVRALWLTRDEIAEHRDTTPGRILP 264
Query: 380 NRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ-NAANFEVIAQK 435
+ L+EIA P A L+ L + RY+ ++N++ A+ + Q+
Sbjct: 265 DAALVEIATAAPQDMATLKGLRGLRGQGPRRYLSQWHDAVENALALPEADLPTVGQR 321
>gi|342179232|sp|A6V8R6.2|RND_PSEA7 RecName: Full=Ribonuclease D; Short=RNase D
Length = 376
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 17/242 (7%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
A+D E + +F L+Q+ ++++D L +R GP+ E+ +DP KV+H
Sbjct: 30 LALDTEFMRVDTFYPAAGLVQVGDGRREWLIDPLLVR-DWGPF-AELLEDPRVVKVLHAC 87
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRV 269
D+ R G +FDT A+ L + +S+ Y L+ ++ K+ +DW
Sbjct: 88 SEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQ 146
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
RPL + +RYA +D +L +Y + +LS E L + + ++CR+ +
Sbjct: 147 RPLTEMQMRYAADDVQHLAQVYLALDARLSE-----EKRAWLLEDGAELVANLCRESDPR 201
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
E E G L QQLAV+ LC WR+ AR + +VL RTL +A+
Sbjct: 202 EAYREVKL-------GWRLRPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARL 254
Query: 390 LP 391
LP
Sbjct: 255 LP 256
>gi|187735079|ref|YP_001877191.1| 3'-5' exonuclease [Akkermansia muciniphila ATCC BAA-835]
gi|187425131|gb|ACD04410.1| 3'-5' exonuclease [Akkermansia muciniphila ATCC BAA-835]
Length = 352
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 116/258 (44%), Gaps = 17/258 (6%)
Query: 134 EEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGP 193
EE+ + ++ AA + +DLE + + CL+Q + T ++D L + +GP
Sbjct: 6 EELLEWRKRAAA-QPAGRVVLDLEADSLHRYQEKICLIQYADETGSCLIDPLSIE-DMGP 63
Query: 194 YLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHF 253
+ + + MHGAD D+ Q + ++DT A+R+L + L L+ HF
Sbjct: 64 FYNWL---KETEVWMHGADYDMSLFQNAWETLPAMIWDTQTAARLLGFRQFGLAALVEHF 120
Query: 254 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT 313
G+ +K Q ADW RPL M+ YA D +Y+L + D + L +
Sbjct: 121 HGITLSKSSQKADWARRPLSPTMVTYALNDVNYMLDMADKLTAALRKKGRMGW-----FE 175
Query: 314 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIARADDE 372
E+ + S + R E+ L + +QG G LN + LA + + WRD A+ D+
Sbjct: 176 EICRHSMERAR---ERHLAGHQD---PWRIQGCGKLNRKGLAALREMWTWRDAEAKTWDK 229
Query: 373 STGYVLPNRTLIEIAKQL 390
V N LI+ + L
Sbjct: 230 PAFMVCSNADLIQWSVAL 247
>gi|423713103|ref|ZP_17687363.1| ribonuclease D [Bartonella vinsonii subsp. arupensis OK-94-513]
gi|395424729|gb|EJF90909.1| ribonuclease D [Bartonella vinsonii subsp. arupensis OK-94-513]
Length = 384
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 123/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + DL+ A L+S D VD E + +F CL+Q+++ ++D + + +
Sbjct: 4 LITQTTDLESAIAALRSSDFVTVDTEFIRETTFWPQLCLIQLASPDVTVLIDPIAQDINL 63
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
+ ++ D KV H A +DI + G+ +FDT A + + S + ++
Sbjct: 64 HAFF-DLMVDKKITKVFHAARQDIETIYHLGGVIPYPLFDTQIAGSICGFGDSISYDQIV 122
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G + +K + DW RPL ++ L YA D YL +Y ++K +L + D
Sbjct: 123 QRCTGHHIDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKQLEENERTHWMDDE 182
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ ++YD+ K+ ++G ++LAV+ + WR+ AR
Sbjct: 183 IAILLTPKTYDMPEDEAWKK------------VKGKVQKPRELAVLQKIAAWRERKARRY 230
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ +++ + +LIEIA Q P A L+RL
Sbjct: 231 NTPRRHIMKDESLIEIAIQQPKDEAALKRL 260
>gi|430003114|emb|CCF18897.1| Ribonuclease D (RNase D) [Rhizobium sp.]
Length = 381
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 122/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E L++ AKL D +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTAALEDACAKLAQSDFITIDTEFLRETTFWPQLCLIQMASPTMEVLVDPLAKGLDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ E+ D KV H A +DI + + +FDT A+ V + S + L+
Sbjct: 61 KPFF-ELMADRKVIKVFHAARQDIEIIHHLGNLVPHPIFDTQVAAMVCGFGDSVSYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G + +K + DW RPL D+ L YA D +L +Y +K +L E E
Sbjct: 120 QRTTGAHIDKTSRFTDWSRRPLSDKQLEYALADVTHLRDVYAALKAQL-----EREGRAG 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
LTE + ++ ++++L L+ +LA+V + WR+ AR+
Sbjct: 175 WLTE----EMAILESANTYDIHPDDAWLR---LKARLRKPTELAIVKFVAAWREREARSR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P L RL
Sbjct: 228 NVPRSRVLKDDAIYEIAQQQPKDTDALSRL 257
>gi|375101467|ref|ZP_09747730.1| ribonuclease D [Saccharomonospora cyanea NA-134]
gi|374662199|gb|EHR62077.1| ribonuclease D [Saccharomonospora cyanea NA-134]
Length = 413
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 133/300 (44%), Gaps = 22/300 (7%)
Query: 107 LDFVDKDIGDVEAVKPPSL----EQTPFKLVEEVKDLKELAAKL-KSVDEFAVDLEHNQY 161
+D D+ G A P L E TP ++ + L+ A+L + AVD E
Sbjct: 1 MDNADQGSGTPGASAPLPLTEPAEGTP-DVIADPGTLRAACARLAEGSGALAVDTERASG 59
Query: 162 RSFLGLTCLMQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQR 220
+ L+QI F++D + LR + P L EV KD + V+H A +D+ L
Sbjct: 60 YRYWPKAYLVQIRREGAGTFLIDPIPLRDDLAP-LAEVMKD--AEWVLHAASQDLPCLA- 115
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
+ G++ +FDT A R+ +R +L L+ G K + ADW RPLP + L YA
Sbjct: 116 ELGLHPPALFDTELAGRLAGYQRVALGTLVEELLGYRLEKGHSAADWSRRPLPVDWLNYA 175
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 340
D L+ + D ++ +L++ K E + ++ R SE +
Sbjct: 176 ALDVELLVPLRDKLEAELAASGK---------LEWALQEFEAVRTAEPPGPRSE-PWRRT 225
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
G+ A+ LA V L E RD +AR D + G +LP+ +I P + A L++L
Sbjct: 226 SGIHKI-RTARGLAAVRALWEARDELARKRDRAPGRILPDSAIINAVLADPRSPADLQKL 284
>gi|23501637|ref|NP_697764.1| ribonuclease D [Brucella suis 1330]
gi|261754734|ref|ZP_05998443.1| ribonuclease D [Brucella suis bv. 3 str. 686]
gi|376280430|ref|YP_005154436.1| ribonuclease D [Brucella suis VBI22]
gi|384224424|ref|YP_005615588.1| ribonuclease D [Brucella suis 1330]
gi|23347555|gb|AAN29679.1| ribonuclease D [Brucella suis 1330]
gi|261744487|gb|EEY32413.1| ribonuclease D [Brucella suis bv. 3 str. 686]
gi|343382604|gb|AEM18096.1| ribonuclease D [Brucella suis 1330]
gi|358258029|gb|AEU05764.1| ribonuclease D [Brucella suis VBI22]
Length = 385
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 124/277 (44%), Gaps = 24/277 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+L+ + L+E L D VD E + +F CL+Q+++ +VD L +
Sbjct: 1 MQLITTTEALEEAVFALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQASRVLKL-ER 243
+ P+ R + D KV H A +DI + +L N+ FDT A+ V +
Sbjct: 61 DLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVAAMVCGFGDA 114
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
S + L+ G + +K + DWR RPL D+ L YA D YL IY +K +L +
Sbjct: 115 ISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGR 174
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
++ +++YD L ++++ + L +LA+V + WR
Sbjct: 175 SEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELAIVQAVAAWR 222
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 223 EREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|161618719|ref|YP_001592606.1| ribonuclease D [Brucella canis ATCC 23365]
gi|260566676|ref|ZP_05837146.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|376274500|ref|YP_005114939.1| ribonuclease D [Brucella canis HSK A52141]
gi|161335530|gb|ABX61835.1| ribonuclease D [Brucella canis ATCC 23365]
gi|260156194|gb|EEW91274.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|363403067|gb|AEW13362.1| ribonuclease D [Brucella canis HSK A52141]
Length = 382
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 124/277 (44%), Gaps = 24/277 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+L+ + L+E L D VD E + +F CL+Q+++ +VD L +
Sbjct: 1 MQLITTTEALEEAVFALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQASRVLKL-ER 243
+ P+ R + D KV H A +DI + +L N+ FDT A+ V +
Sbjct: 61 DLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVAAMVCGFGDA 114
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
S + L+ G + +K + DWR RPL D+ L YA D YL IY +K +L +
Sbjct: 115 ISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGR 174
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
++ +++YD L ++++ + L +LA+V + WR
Sbjct: 175 SEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELAIVQAVAAWR 222
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 223 EREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|395786188|ref|ZP_10465915.1| ribonuclease D [Bartonella tamiae Th239]
gi|423716919|ref|ZP_17691109.1| ribonuclease D [Bartonella tamiae Th307]
gi|395422486|gb|EJF88682.1| ribonuclease D [Bartonella tamiae Th239]
gi|395428993|gb|EJF95068.1| ribonuclease D [Bartonella tamiae Th307]
Length = 386
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 127/302 (42%), Gaps = 47/302 (15%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
KL+ + DL A L+ VD E + +F CL+QIS+ ++D L +
Sbjct: 1 MKLITQTDDLNTAIAILRQSQFVTVDTEFIRETTFWPELCLIQISSDELSVLIDPLSENI 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEY 248
+ + + D KV H A +DI + + G+ +FDT A+ + E S +
Sbjct: 61 DLSSFF-TLISDTQVVKVFHSARQDIEIIYKMAGLIPTPLFDTQIAAAICGYGETISYDQ 119
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS--------- 299
+++ G +K + DW RPL + L YA D YL +Y ++ +L
Sbjct: 120 IVNRITGDTIDKTSRFTDWSARPLSENQLSYALADVTYLRQVYRVLNEELEKKGRSDWLN 179
Query: 300 ---SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVV 356
S+ K + D P E +K+ ++G +++LAV+
Sbjct: 180 EEMSVLKTPKTYDLPEDEAWKK------------------------VKGRLRKSRELAVL 215
Query: 357 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP---TTAAKLRRLLK------SKHSY 407
+ WR+ A+ + G VL + LIEIA Q P + AKLR + K S HS
Sbjct: 216 QKIAAWREREAKMRNIPRGRVLKDEALIEIATQQPKDEASLAKLRTITKGWERSSSAHSL 275
Query: 408 IE 409
+E
Sbjct: 276 LE 277
>gi|354617195|ref|ZP_09034673.1| 3'-5' exonuclease, partial [Saccharomonospora paurometabolica YIM
90007]
gi|353218454|gb|EHB83215.1| 3'-5' exonuclease, partial [Saccharomonospora paurometabolica YIM
90007]
Length = 282
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 122/280 (43%), Gaps = 39/280 (13%)
Query: 132 LVEEVKDLKELAAKLKS-VDEFAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLRV 189
++ +V L+E A+L + AVD E + L+Q+ T +VD + L
Sbjct: 29 VITDVAGLREACARLAAGSGPIAVDTERASGYRYWPKAYLVQLRREGTGTLLVDPIPLDG 88
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
++ P L EV + V+H A +D+ L + G++ +FDT A R+ ER +L L
Sbjct: 89 ELAP-LAEVLG--AHEWVLHAASQDLPCLA-ELGLHPPALFDTELAGRLAGYERVALGTL 144
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK------ 303
+ G K + ADW RPLP E L YA D L+ + ++ +L+ K
Sbjct: 145 VETLLGYRLEKGHSAADWSRRPLPAEWLNYAALDVELLVPLRGKLEAELAGQGKLDWAHQ 204
Query: 304 ESENSDT-----PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 358
E E + T P E ++R+ S +H A+ LA V
Sbjct: 205 EFEAARTAGPPAPRAEPWRRT----------------SGIHKIK------TARGLAAVRA 242
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 398
L E RD +AR D + G VLP+ ++ P T A+LR
Sbjct: 243 LWEERDALARGRDRAPGRVLPDSAIVNAVLADPRTDAELR 282
>gi|402849302|ref|ZP_10897541.1| Ribonuclease D [Rhodovulum sp. PH10]
gi|402500432|gb|EJW12105.1| Ribonuclease D [Rhodovulum sp. PH10]
Length = 406
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 126/286 (44%), Gaps = 27/286 (9%)
Query: 119 AVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTE 178
A PS+E TP + + + L + ++ + VD E + ++ L C+ Q++ E
Sbjct: 15 ATAAPSIE-TPIEPITTTEALAAVCERMSAHPFVTVDTEFLRESTYYPLLCVAQMACVGE 73
Query: 179 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 238
VVD L + + P+ + D KV H A +DI + G+ +FDT A+ V
Sbjct: 74 AVVVDALADGIDLSPFW-ALMADQRVVKVFHAARQDIEIVWHMAGLIPQPLFDTQVAAMV 132
Query: 239 LKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 297
L + S + L+ CG N +K ++ DW RPL + YA D +L +Y +
Sbjct: 133 LGYGDAISYDQLVQRVCGTNLDKSHRFTDWSRRPLTPAQIMYATSDVTHLRDVYVALSAD 192
Query: 298 LSS------MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 351
L+ + +E E +P T Y E E ++ L+ +
Sbjct: 193 LAKRGRANWVDEEMEVLTSPST-------------YRAE--PETAWER---LKSRVRKPK 234
Query: 352 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
+LA++ + WR+ A+A D G VL + + EIA Q PTT +L
Sbjct: 235 ELAILIEVAAWREREAQARDVPRGRVLKDDVIGEIALQAPTTPERL 280
>gi|375264824|ref|YP_005022267.1| ribonuclease D [Vibrio sp. EJY3]
gi|369840148|gb|AEX21292.1| ribonuclease D [Vibrio sp. EJY3]
Length = 388
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 134/300 (44%), Gaps = 15/300 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+K++ + KDL+++ A+ + D +D E + R+F L+Q+ ++D +L
Sbjct: 19 YKIIIKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGNNLSLIDPTEL-T 77
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
+ P++ E+ KD + KV+H D+ Q FG M DT + L ++
Sbjct: 78 DMSPFV-ELLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFAT 136
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ + GV +K DW RPL + L YA D HYLL +Y+I+ K+ +
Sbjct: 137 LVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEILLDKV---------T 187
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
+ ++ D+ +E+ EN+YL I G L +LAV+ L WR A
Sbjct: 188 EAGWWHAVQQESDLLVSKRIREVNEENAYLDIKG--AWQLKPAELAVLKPLATWRYRQAI 245
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 428
D + +V L+ +A+ L T+ K + R+ + I+K + Q A+
Sbjct: 246 KRDLALNFVFKEGDLLTVAR-LGLTSFKKMEAEGIDIRAVNRHGAKIADIVKKAKQTPAD 304
>gi|395793332|ref|ZP_10472737.1| ribonuclease D [Bartonella vinsonii subsp. arupensis Pm136co]
gi|395431646|gb|EJF97664.1| ribonuclease D [Bartonella vinsonii subsp. arupensis Pm136co]
Length = 384
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 123/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + DL+ A L+S D VD E + +F CL+Q+++ ++D + + +
Sbjct: 4 LITQTTDLESAIAALRSSDFVTVDTEFIRETTFWPQLCLIQLASPDVTVLIDPIAQDINL 63
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
+ ++ D KV H A +DI + G+ +FDT A + + S + ++
Sbjct: 64 HAFF-DLMVDKKITKVFHAARQDIETIYHLGGVIPYPLFDTQIAGSICGFGDSISYDQIV 122
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G + +K + DW RPL ++ L YA D YL +Y ++K +L + D
Sbjct: 123 QRCTGHHIDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKQLEENERTHWMDDE 182
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ ++YD + E E + ++G ++LAV+ + WR+ AR
Sbjct: 183 IAILLTPKTYD----MPEDEAWKK--------VKGKVQKPRELAVLQKIAAWRERKARRY 230
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ +++ + LIEIA Q P A L+RL
Sbjct: 231 NTPRRHIMKDECLIEIAIQQPKDEAALKRL 260
>gi|407974482|ref|ZP_11155391.1| ribonuclease D [Nitratireductor indicus C115]
gi|407430171|gb|EKF42846.1| ribonuclease D [Nitratireductor indicus C115]
Length = 392
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 120/270 (44%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + KDL+ A LK D VD E + +F CL+Q++T +VD L + +
Sbjct: 3 LITKQKDLEAAIAALKKSDFVTVDTEFIRETTFWPELCLIQMATADITVLVDPLASDIDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ E+ D KV H A +DI + G+ +FD+ A+ V + S + L+
Sbjct: 63 KPFF-ELMADENVVKVFHAARQDIEIIHHLGGLIPHPVFDSQVAATVCGFGDSVSYDQLV 121
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G + +K + DWR RPL D+ L YA D +L+ +Y ++ +L + ++
Sbjct: 122 SKITGAHIDKSSRFTDWRRRPLTDKQLSYAAADVTHLIDVYKHLREELQREGRAHWLNEE 181
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ +YD K L L I +LAV+ + WR+ AR
Sbjct: 182 MAVLTARETYDPHPDDAWKRL-----KLRIK-------KPIELAVLQQVAAWREREARER 229
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ G VL + + E+A+Q P L RL
Sbjct: 230 NVPRGRVLKDDAIYEVAQQQPKDTEALGRL 259
>gi|296536446|ref|ZP_06898543.1| ribonuclease D [Roseomonas cervicalis ATCC 49957]
gi|296263225|gb|EFH09753.1| ribonuclease D [Roseomonas cervicalis ATCC 49957]
Length = 394
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 125/275 (45%), Gaps = 26/275 (9%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + L EL A+L++ VD E + R++ C++Q++ + V+D + +
Sbjct: 14 LITTTEALAELCARLRTEPFVTVDTEFMRERTYWPELCVVQLAGAEDVAVIDAQAEGLDL 73
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P L E+ DP KV H A +D+ FG +FDT A+ V ++ S + L+
Sbjct: 74 AP-LGELLADPKVTKVFHAARQDVEICILRFGAPPRPLFDTQIAAMVAGFGDQASYDSLV 132
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM------KIKLSSMPKE 304
G +K ++ +DW RPL + YA D +L +Y + + +LS + +E
Sbjct: 133 RALAGAQIDKAHRFSDWAARPLSPAQINYAAADVTHLRRVYTALVERLTQEGRLSWVAEE 192
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
P T Y++ + +E+ L+ N + LA V L WR+
Sbjct: 193 MAELTDPAT--YRQDPETA---WER-------------LKPRSSNRRFLAAVQALAAWRE 234
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 399
A+ + ++ + TL+EIA P+TAA+L R
Sbjct: 235 REAQRVNIPRQRLVRDETLMEIAATSPSTAAELSR 269
>gi|433775810|ref|YP_007306277.1| ribonuclease D [Mesorhizobium australicum WSM2073]
gi|433667825|gb|AGB46901.1| ribonuclease D [Mesorhizobium australicum WSM2073]
Length = 383
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 125/272 (45%), Gaps = 28/272 (10%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
K+L+ + A + D VD E + +F + CL+Q++ ++D L + + P+ R
Sbjct: 8 KELETVLAAFEKSDFVTVDTEFIRETTFWPILCLIQMAAPGVTALIDPLSPDIDLAPFFR 67
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQASRVLKL-ERNSLEYLL 250
+ + KV H A +DI + ++L ++ FDT A+ V + S + L+
Sbjct: 68 -LMANEAVVKVFHAARQDI-----EIIVHLGDLVPHPVFDTQVAAMVCGFGDSVSYDQLV 121
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G +K + DWR RPL D+ L YA D +L+ +Y + +L+ EN
Sbjct: 122 QRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHLNAELA-----RENRAH 176
Query: 311 PLTEVYKRSYDVC--RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
L E DV R+ Y+ E+++ L+ Q+LA+V + WR+ AR
Sbjct: 177 WLNE----EMDVLTSRETYDPH--PEDAWKR---LKMRLRKPQELAIVQAVAAWREREAR 227
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
D G VL + + EIA+Q P A L +L
Sbjct: 228 ERDVPRGRVLKDDAIYEIAQQGPRDAPALAKL 259
>gi|374623203|ref|ZP_09695717.1| ribonuclease D [Ectothiorhodospira sp. PHS-1]
gi|373942318|gb|EHQ52863.1| ribonuclease D [Ectothiorhodospira sp. PHS-1]
Length = 381
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 137/296 (46%), Gaps = 18/296 (6%)
Query: 131 KLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQ 190
+ ++ + L+ L L+S A+D E + +++ CL+Q++T +D L L
Sbjct: 5 RFIDTPEALEALCRDLESCAWLALDTEFIREKTYYPQLCLIQVATPDLVACIDPLALE-D 63
Query: 191 VGPYLREVFKDPTKKKVMHGADRDI-VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY- 248
+ P L + + P KV+H A +D+ ++ RD G +FDT A+ +L + + Y
Sbjct: 64 LAP-LDRLLRRPDLLKVLHAAGQDLEIFYHRD-GTVPAPIFDTQVAASLLG-HGDQIGYG 120
Query: 249 -LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
L+ GV K + DW RPL E L YA +D YL Y +++ L E
Sbjct: 121 KLIQAVLGVELEKGHSRTDWARRPLDPEQLTYAADDVRYLAQAYPLIRDAL-----ERSG 175
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
T L E ++R D YE + + + G+ L QLA+ L WR+ A
Sbjct: 176 RLTWLEEDFRRLADPTG--YEPA--PDAMWRRLKGINT--LRGIQLAIARELARWREQEA 229
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 423
D ++L + ++++A++ P+T A L R+ + + R+ +L +++ +
Sbjct: 230 MRADRPRRWLLQDEVILDLARRKPSTPADLERIRGLQEQTLRRHGQTLLDLVRTGL 285
>gi|357029287|ref|ZP_09091290.1| ribonuclease D [Mesorhizobium amorphae CCNWGS0123]
gi|355535902|gb|EHH05184.1| ribonuclease D [Mesorhizobium amorphae CCNWGS0123]
Length = 383
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 123/269 (45%), Gaps = 24/269 (8%)
Query: 138 DLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLRE 197
+L+ + A + D VD E + +F + CL+Q++ ++D L + + P+ R
Sbjct: 9 ELENVVAAFEKSDFVTVDTEFIRETTFWPILCLIQMAAPGVTALIDPLSPDIDLKPFFR- 67
Query: 198 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQASRVLKL-ERNSLEYLLH 251
+ + KV H A +DI + ++L ++ FDT A+ V + S + L+
Sbjct: 68 LMANEAVVKVFHAARQDI-----EIIVHLGDLVPHPVFDTQVAAMVCGFGDSVSYDQLVQ 122
Query: 252 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP 311
G +K + DWR RPL D+ L YA D +L+ +Y + +L EN
Sbjct: 123 RITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHLSAELV-----RENRAHW 177
Query: 312 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 371
L E + R+ Y+ E+++ L+ Q+LA+V + WR+ AR D
Sbjct: 178 LNE--EMEVLTSRETYDPH--PEDAWKR---LKMRLRKPQELAIVQAVAAWREREARERD 230
Query: 372 ESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
G VL + + E+A+Q P AA L RL
Sbjct: 231 VPRGRVLKDDAIYEVAQQAPRDAAGLGRL 259
>gi|402829193|ref|ZP_10878069.1| ribonuclease D [Slackia sp. CM382]
gi|402284174|gb|EJU32677.1| ribonuclease D [Slackia sp. CM382]
Length = 397
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 120/262 (45%), Gaps = 18/262 (6%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
+ + K L+E A ++ D A+D E + R + CL+Q+ T VVD LK+R +
Sbjct: 3 ITDTKQLEEFVAFARTCDVVAIDTEFLRERCYWAKLCLIQLGTDERSVVVDPLKVR-DLS 61
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL-KLERNSLEYLLH 251
P LR++ D + KV H A +D+ L + + +FDT A+ +L + + L+
Sbjct: 62 P-LRDLMVDTSVVKVFHAATQDLDILFHELDVMPDPIFDTQVAAALLGQTVQVGYGTLVL 120
Query: 252 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES--ENSD 309
+ CGV K DW RPL + YA ED YL IY + +L ++ + S E+
Sbjct: 121 NECGVRLKKADSFTDWARRPLSSSQINYALEDVVYLPRIYRQLTERLEALGRASWLEHDF 180
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
L + + D EN + H+ + L+ +QLA + WR+ A
Sbjct: 181 AELVDPSRYRVD-----------PENRWRHLKNVN--QLSGRQLACAKHVAAWRERKAME 227
Query: 370 DDESTGYVLPNRTLIEIAKQLP 391
+ VL + ++E+ ++ P
Sbjct: 228 RNIPRKAVLSDVQIVEMCRREP 249
>gi|257068547|ref|YP_003154802.1| ribonuclease D [Brachybacterium faecium DSM 4810]
gi|256559365|gb|ACU85212.1| ribonuclease D [Brachybacterium faecium DSM 4810]
Length = 399
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 118/260 (45%), Gaps = 29/260 (11%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTE-DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+Q+ T ++D L + LR + + ++ V+H
Sbjct: 42 VAVDAERASSYRYSSRAYLVQLRTEAAGTALIDPLAFTMPA--TLRSLLAE--REWVLHA 97
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
A +D+ L + G+ +FDT A+R+L +ER L ++ G+ KE+ ADW R
Sbjct: 98 AGQDLPSLA-EIGLEPGGLFDTELAARLLGMERVGLGAVVEDTLGLRLAKEHSAADWSRR 156
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLP+ L YA D L+ + D+++ +L KE D RQ +E E
Sbjct: 157 PLPEGWLTYAALDVEVLVEVRDVLRERLREACKE----------------DWARQEFEHE 200
Query: 331 LLSEN------SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 384
+ E+ S+ ++GL G +QLA + + RD IA +D S V+ +R L+
Sbjct: 201 RVREHGPTRSSSWRGLHGLGGLR-TPRQLAAAREMWQRRDEIAAGEDLSPHRVIKDRDLV 259
Query: 385 EIAKQLPTTAAKLRRLLKSK 404
AK+ P R L +K
Sbjct: 260 AGAKEAPRGREAFDRALPAK 279
>gi|83645396|ref|YP_433831.1| ribonuclease D [Hahella chejuensis KCTC 2396]
gi|83633439|gb|ABC29406.1| ribonuclease D [Hahella chejuensis KCTC 2396]
Length = 398
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 143/325 (44%), Gaps = 28/325 (8%)
Query: 117 VEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTR 176
+ A+ PP E + ++ L+E +L+ D AVD E + +F L+Q+ R
Sbjct: 7 LSAIYPPDYES---RWIDTPAALQEALLRLEKTDWLAVDTEFIRGTTFYPAPALLQLYDR 63
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYL-CNMFDTGQA 235
++VD LK+ G + +F+ KV+H D+ L G+ C + DT A
Sbjct: 64 QCVYLVDMLKITDWSG--VSRLFESRDILKVVHACSEDLE-LFNCVGLSQPCGLIDTQVA 120
Query: 236 SRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
+ +L E N L+ L+ G+ K +DW RPL D+ ++YA+ED L +Y +
Sbjct: 121 NALLDGELNEGLQSLVRQNLGIELEKHATRSDWTQRPLTDKQIQYAQEDVVVLWPLYQKL 180
Query: 295 --KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 352
++LS + + + D+ R YL + G AQQ
Sbjct: 181 AEALRLSGKYEIALEEGEAMRLAAAGVQDMGR-----------YYLKLRGGWRLRKGAQQ 229
Query: 353 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 412
L +A L WR+ AR D + P+ LI IA++ P T +L + + + + RY
Sbjct: 230 L--LAKLAAWREQEARGRDIPRKKICPDDELIAIAQRRPRTLGQLTEITSIQGAGLRRYG 287
Query: 413 GPVLSIIKNSMQNAAN-----FEVI 432
++ +++ M+ + FE+I
Sbjct: 288 AELVGMVREHMKADGDEPETGFEMI 312
>gi|153009869|ref|YP_001371084.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188]
gi|404320174|ref|ZP_10968107.1| ribonuclease D [Ochrobactrum anthropi CTS-325]
gi|151561757|gb|ABS15255.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188]
Length = 385
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 121/270 (44%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + L+E + L D VD E + +F CL+Q+++ +VD L + +
Sbjct: 3 LITTTQALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ R + D T KV H A +DI + + +FD+ A+ V + S + L+
Sbjct: 63 APFFR-LMADETIVKVFHAARQDIEIVFHLGDLIPSPVFDSQVAAMVCGFGDAISYDQLV 121
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G +K + DWR RPL D+ L YA D YL IY +K +L + ++
Sbjct: 122 QKVTGKQIDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELEKEGRSEWVNEE 181
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ +YD + ++++ + L +LA+V + WR+ AR
Sbjct: 182 MAVLTSRETYD---------MHPDDAWRRVKARVRKPL---ELAIVQAVAAWREREARER 229
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ G ++ + T+ EIA+Q P A L RL
Sbjct: 230 NVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|408791723|ref|ZP_11203333.1| 3'-5' exonuclease [Leptospira meyeri serovar Hardjo str. Went 5]
gi|408463133|gb|EKJ86858.1| 3'-5' exonuclease [Leptospira meyeri serovar Hardjo str. Went 5]
Length = 406
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 6/164 (3%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLR- 188
+ LV+ K L L+ ++D E + Y ++ CL+QI++ +++++D LK+
Sbjct: 7 YILVDTAKALDLALINLRQSKIMSIDTESSGYYTYYPKVCLIQINSNGKNYLIDPLKITN 66
Query: 189 -VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLE 247
+GP +FKD K+ H A DI L+RDFG N DT +SR+L LE++SL
Sbjct: 67 LSALGP----LFKDENILKIFHSAQDDIKALKRDFGFEFVNTADTMISSRLLSLEQSSLS 122
Query: 248 YLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 291
+++ H+ V +K Q ++W +RPL + L+YA DT YL I+
Sbjct: 123 HVVEHYHKVTLSKVEQKSNWEIRPLQKQQLKYAALDTAYLESIW 166
>gi|312196135|ref|YP_004016196.1| 3'-5' exonuclease [Frankia sp. EuI1c]
gi|311227471|gb|ADP80326.1| 3'-5' exonuclease [Frankia sp. EuI1c]
Length = 440
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 126/280 (45%), Gaps = 23/280 (8%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVD-EFAVDLEHNQYRSFLGLTCLMQISTR-TEDFVV 182
+E TP ++ + + L ++A +L + D A D E + L+Q+ R + ++
Sbjct: 19 VEGTP-PVITDARALADVAERLAAGDGPVAFDAERASGYRYSQRAYLVQVRRRGSGTALI 77
Query: 183 DTLKLRVQVGPYLREVFKDPTK--KKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 240
D + L P L V +D + V+H A +D+ L + G+ +FDT A R+L
Sbjct: 78 DPVAL-----PDL-SVIQDKVGGVEWVLHAASQDLPCLA-ELGLRPTTLFDTELAGRLLG 130
Query: 241 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300
ER L ++ G K + ADW RPLP+ LRYA D L+ + D + ++L+
Sbjct: 131 YERVGLGMMVERVLGFGLEKGHSAADWSTRPLPEPWLRYAALDVELLVELRDALAVELAE 190
Query: 301 MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 360
K + + + +E +E + G+ A + +QLA V +
Sbjct: 191 TGK---------LDFAHQEFAAIVAAPPREPRAE-PWRRTSGIHRA-RSRRQLAAVRAMW 239
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
RD IAR D + G VLP+ +I+ P A +L +L
Sbjct: 240 SARDKIARTRDIAPGRVLPDSAIIDAVLNAPADATELVKL 279
>gi|294852115|ref|ZP_06792788.1| ribonuclease D [Brucella sp. NVSL 07-0026]
gi|294820704|gb|EFG37703.1| ribonuclease D [Brucella sp. NVSL 07-0026]
Length = 385
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 124/277 (44%), Gaps = 24/277 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+L+ + L+E + L D VD E + +F CL+Q+++ +VD L +
Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQASRVLKL-ER 243
+ P+ R + D KV H A +DI + +L N+ FDT A+ V +
Sbjct: 61 DLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVAAMVCGFGDA 114
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
S + L+ + +K + DWR RPL D+ L YA D YL IY +K +L +
Sbjct: 115 ISYDQLVQKVTSKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGR 174
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
++ +++YD L ++++ + L +LA+V + WR
Sbjct: 175 SEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELAIVQAVAAWR 222
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 223 EREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|395766735|ref|ZP_10447273.1| ribonuclease D [Bartonella doshiae NCTC 12862]
gi|395415347|gb|EJF81781.1| ribonuclease D [Bartonella doshiae NCTC 12862]
Length = 383
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 125/272 (45%), Gaps = 14/272 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
KL+ + DL+ A L++ D VD E + +F CL+QI++ ++D + +
Sbjct: 1 MKLITKTTDLEIALATLRTSDFVTVDTEFIRETTFWPQLCLIQIASPDITMLIDPMASDI 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEY 248
+ P+ ++ D KV H A +DI + GI +FDT A + + S E
Sbjct: 61 DLKPFF-DLMIDKRIVKVFHAARQDIEIIYHLGGIIPYPLFDTQIAGSICGFGDSISYEQ 119
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
++ G + +K + DW RPL ++ L YA D YL +Y ++K KL +
Sbjct: 120 IVQRCTGHHLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKQKLEKNKRTHWMD 179
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
D + +YD+ ++++ ++G ++LAV+ + WR+ A+
Sbjct: 180 DEIAILLTPGTYDIA---------EDDAW---KKVKGKVKKKRELAVLQKIAAWREREAK 227
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
++ +++ + LIEIA Q P L+RL
Sbjct: 228 KNNVPRRHIMKDECLIEIAIQQPKDEFALKRL 259
>gi|328543996|ref|YP_004304105.1| ribonuclease d protein [Polymorphum gilvum SL003B-26A1]
gi|326413740|gb|ADZ70803.1| Probable ribonuclease d protein [Polymorphum gilvum SL003B-26A1]
Length = 394
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 119/269 (44%), Gaps = 26/269 (9%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L + ++L S D VD E + +F C++Q++ + +VD L + + P+L ++
Sbjct: 10 LADACSRLASHDYVTVDTEFLRETTFWPKLCVIQMAGPDDAVIVDALADGLDLAPFL-DL 68
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHFCGVN 257
++ KV H A +DI + G+ +FDT A+ V + S + L+ G
Sbjct: 69 MRNERVTKVFHAARQDIEIVYHLGGLIPHPLFDTQVAAMVCGFGDSISYDQLVQRITGAR 128
Query: 258 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYK 317
+K + DW RPL + L YA D YL +Y +K L+ + D
Sbjct: 129 IDKSSRFTDWARRPLTQKQLDYALADVTYLRDVYRFLKANLAEQDRSHWVED-------- 180
Query: 318 RSYDVCRQLYEKELL-SENSYLH--IYGLQGAGLNAQ---QLAVVAGLCEWRDVIARADD 371
E E+L SE +Y + Q + + +LAV+ + WR++ A++ D
Sbjct: 181 ----------EMEILTSEGTYRTEPVNAWQRLKMRVRKPVELAVLMEVAAWREIEAQSRD 230
Query: 372 ESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
VL + + EIA Q P TA L RL
Sbjct: 231 VPRSRVLKDDAIYEIAAQQPQTAEALSRL 259
>gi|163868507|ref|YP_001609716.1| hypothetical protein Btr_1359 [Bartonella tribocorum CIP 105476]
gi|161018163|emb|CAK01721.1| Ribonuclease D [Bartonella tribocorum CIP 105476]
Length = 384
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 129/286 (45%), Gaps = 14/286 (4%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + DL+ L++ D VD E + +F CL+Q+++ ++D + + +
Sbjct: 4 LITQTTDLEIALNALRNSDFVTVDTEFIRETTFWPQLCLIQLASPDVTVLIDPIAPDIDL 63
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ ++ D KV H A +DI + G+ +FDT A + + S + ++
Sbjct: 64 QPFF-DLMIDKKIVKVFHSARQDIETIYYLGGVIPSPLFDTQIAGSICGFGDSISYDQIV 122
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
H G + +K + DW RPL ++ L YA D YL +Y ++K +L + D
Sbjct: 123 QHCTGHHLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKRLEKNQRTHWMDDE 182
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ ++YD + E E + G ++LAV+ + WR+ AR
Sbjct: 183 VTILLNPKTYD----MPEDEAWKKVK--------GKVKKPRELAVLQKIAAWREREARKY 230
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVL 416
+ +++ + LIEIA Q P + L+RL ++ +R + P L
Sbjct: 231 NMPRRHLMKDECLIEIAIQQPKDESALKRLRSLNKNWDKRSIAPSL 276
>gi|139437245|ref|ZP_01771405.1| Hypothetical protein COLAER_00384 [Collinsella aerofaciens ATCC
25986]
gi|133776892|gb|EBA40712.1| ribonuclease D [Collinsella aerofaciens ATCC 25986]
Length = 377
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 116/264 (43%), Gaps = 20/264 (7%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L + + + D AVD E + R+F CL+QI+T E VD L + + P L E+
Sbjct: 9 LLDFCQRAREFDAIAVDTEFLRERTFHPRLCLVQIATPAESVAVDPLVID-DLSP-LAEL 66
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGV 256
D + KV H +D+ + G+ +FDT A+ L ER + Y L+ FCGV
Sbjct: 67 MADESVTKVFHACSQDMEVMLHTVGVLPRPIFDTQVAAAFLG-ERQQISYGALVQTFCGV 125
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD--TPLTE 314
+ K DW RPL D+ + YA +D YL+ Y M +L + + D PL +
Sbjct: 126 SLPKTESLTDWSRRPLTDKQIEYAIDDVKYLIVAYTEMMSRLRELGRVDWVLDELRPLAD 185
Query: 315 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 374
+ Y R +++ NS + QL + L WR+ A +
Sbjct: 186 --ESHYRADRHEAFRKVKRINS-----------CSRHQLGIARELAAWREDRAERRNIPR 232
Query: 375 GYVLPNRTLIEIAKQLPTTAAKLR 398
+V+ + TL+ + K+ P + R
Sbjct: 233 KWVMSDDTLLALVKRNPVRVEEFR 256
>gi|269215504|ref|ZP_06159358.1| ribonuclease D [Slackia exigua ATCC 700122]
gi|269130991|gb|EEZ62066.1| ribonuclease D [Slackia exigua ATCC 700122]
Length = 399
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 119/262 (45%), Gaps = 18/262 (6%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
+ + K L+E A ++ D A+D E + R + CL+Q+ T VVD LK+ +
Sbjct: 5 ITDTKQLEEFVAFARTCDVVAIDTEFLRERCYWAKLCLIQLGTDERSVVVDPLKVH-DLS 63
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL-KLERNSLEYLLH 251
P LR++ D + KV H A +D+ L + + +FDT A+ +L + + L+
Sbjct: 64 P-LRDLMVDTSVVKVFHAATQDLDILFHELDVMPDPIFDTQVAAALLGQTVQVGYGTLVL 122
Query: 252 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES--ENSD 309
+ CGV K DW RPL + YA ED YL IY + +L ++ + S E+
Sbjct: 123 NECGVRLKKADSFTDWARRPLSSSQINYALEDVVYLPRIYRQLTERLEALGRASWLEHDF 182
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
L + + D EN + H+ + L+ +QLA + WR+ A
Sbjct: 183 AELVDPSRYRVD-----------PENRWRHLKNVN--QLSGRQLACAKHVAAWRERKAME 229
Query: 370 DDESTGYVLPNRTLIEIAKQLP 391
+ VL + ++EI ++ P
Sbjct: 230 RNIPRKAVLSDVQIVEICRREP 251
>gi|337269427|ref|YP_004613482.1| ribonuclease D [Mesorhizobium opportunistum WSM2075]
gi|336029737|gb|AEH89388.1| ribonuclease D [Mesorhizobium opportunistum WSM2075]
Length = 383
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 125/272 (45%), Gaps = 28/272 (10%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
K+L+ A + D VD E + +F + CL+Q++ ++D L + + P+ +
Sbjct: 8 KELETALAAFEKSDFVTVDTEFIRETTFWPILCLIQMAAPGVTALIDPLSSDIDLRPFFK 67
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQASRVLKL-ERNSLEYLL 250
+ + KV H A +DI + ++L ++ FDT A+ V + S + L+
Sbjct: 68 -LMANEAVVKVFHAARQDI-----EIIVHLGDLVPHPVFDTQVAAMVCGFGDSVSYDQLV 121
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G +K + DWR RPL D+ L YA D +L+ +Y + +L+ EN
Sbjct: 122 QRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHLNAELA-----RENRAH 176
Query: 311 PLTEVYKRSYDVC--RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
L E DV R+ Y+ E+++ L+ Q+LA+V + WR+ AR
Sbjct: 177 WLNE----EMDVLTSRETYDPH--PEDAWKR---LKMRLRKPQELAIVQAVAAWREREAR 227
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
D G VL + + E+A+Q P AA L +L
Sbjct: 228 ERDVPRGRVLKDDAIYEVAQQAPRDAAALAKL 259
>gi|407647033|ref|YP_006810792.1| ribonuclease D [Nocardia brasiliensis ATCC 700358]
gi|407309917|gb|AFU03818.1| ribonuclease D [Nocardia brasiliensis ATCC 700358]
Length = 417
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 111/256 (43%), Gaps = 28/256 (10%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+Q+ + F++D + + + P L D + V+H
Sbjct: 46 LAVDAERASGFRYSARAYLIQLRRKGAGTFLIDPIPVTDALAP-LAAAIND--LEWVLHS 102
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L + G+ +FDT R+ ER L ++ + G K + ADW R
Sbjct: 103 ADQDLPGLA-ELGLRPQRLFDTELGGRLAGFERVGLAAMVENLLGHALRKGHGAADWSTR 161
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK------ESENSDTPLTEVYKRSYDVCR 324
PLPDE L YA D LL + D + +L + K E E+ T TE D R
Sbjct: 162 PLPDEWLNYAALDVELLLELRDAVAAELDAQGKSDWAAQEFEHVRT--TEPPAPKADRWR 219
Query: 325 QLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 384
+ S +H A+QLAVV L RD +ARA D + +LP+ +I
Sbjct: 220 R---------TSGIHTL------RRARQLAVVRELWTTRDGLARARDVAPARILPDAAII 264
Query: 385 EIAKQLPTTAAKLRRL 400
P T A+LR L
Sbjct: 265 AAVTADPKTIAQLRGL 280
>gi|269794953|ref|YP_003314408.1| ribonuclease D [Sanguibacter keddieii DSM 10542]
gi|269097138|gb|ACZ21574.1| ribonuclease D [Sanguibacter keddieii DSM 10542]
Length = 437
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 12/194 (6%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A +D+ L + +FDT A+R+L +ER L ++ G+ KE+ D
Sbjct: 115 VLHAASQDLPGLAEQH-LVPSAVFDTELAARILGMERVGLAAVVAEVLGLGLAKEHSAVD 173
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLPD L YA D L+ + D M +L + K TE ++ ++ R L
Sbjct: 174 WSTRPLPDAWLLYAALDVEVLVELRDRMAERLEAAGK---------TEWARQEFEAVR-L 223
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
+ + G A+QLAVV L RD AR D + G VLP+R ++
Sbjct: 224 TGPAAPRVEPWRRVSGSHTL-RQARQLAVVRELWLTRDENARKRDIAPGRVLPDRAIVAA 282
Query: 387 AKQLPTTAAKLRRL 400
A+ +P T L +L
Sbjct: 283 AQAMPRTVPALTKL 296
>gi|397603830|gb|EJK58534.1| hypothetical protein THAOC_21330 [Thalassiosira oceanica]
Length = 452
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 76/157 (48%), Gaps = 10/157 (6%)
Query: 276 MLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN 335
M YA DT YLL IYD ++++L + + D + V RS VC Y+KE +
Sbjct: 1 MRTYALSDTRYLLDIYDQLRLELDT----HSSPDVSIEVVLDRSKQVCLVRYDKEPFQPS 56
Query: 336 SYLHIY--GLQGAG----LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
+Y I G +G L +Q A + L +WRD AR +DES +V PN +L+ IA
Sbjct: 57 AYKSIINKGRRGGKVVTQLTQKQDASLKALYDWRDATARKEDESIFFVCPNASLVRIASN 116
Query: 390 LPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 426
P T L+RLL + R +L + + NA
Sbjct: 117 HPKTVNALQRLLNPTPPLVMRRSQEILDALSSLAANA 153
>gi|424890947|ref|ZP_18314546.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393173165|gb|EJC73210.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2012]
Length = 381
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 123/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E DL +L D +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ E+ DP KV H A +DI + + +FDT A+ V + S + L+
Sbjct: 61 APFF-ELMADPKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVCGFGDSVSYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V+ +K + DW RPL D+ L YA D +L +Y +K +L + E +
Sbjct: 120 SRIKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAEL-----DREGRTS 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
L+E D+ ++ ++++ L+ Q+LA++ + WR+ ARA
Sbjct: 175 WLSE----EMDILEARETYDMHPDDAWQR---LKMRLRKPQELAILKYVAAWREREARAR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P L RL
Sbjct: 228 NVPRSRVLKDDAIYEIAQQQPKDTEALGRL 257
>gi|429730644|ref|ZP_19265290.1| putative ribonuclease D [Corynebacterium durum F0235]
gi|429147082|gb|EKX90112.1| putative ribonuclease D [Corynebacterium durum F0235]
Length = 397
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 126/271 (46%), Gaps = 16/271 (5%)
Query: 132 LVEEVKDLKELAAKLKSVD-EFAVDLEHNQYRSFLGLTCLMQISTRTEDFVV-DTLKLRV 189
L E E A+L++ + A+D E + L+QI V+ D + R
Sbjct: 15 LCESPDQFHEALARLEAGNGPLAIDTERASGIRYGNRAFLVQIRRAGCGTVLFDAEQHRT 74
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
++G L+ + T V+H A D+ LQ +FG + +FDT A R+ +R +L +
Sbjct: 75 ELGEILKPLLNSTTW--VLHAAVSDLPSLQ-NFGWFPTRLFDTEVAGRLAGFDRVNLAAM 131
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ G++ K +DW RP+P L YA D LL + D M L++ K
Sbjct: 132 VEKVLGLHLAKGLAQSDWSRRPIPAAWLTYAALDVEVLLELADSMAAILTADGK------ 185
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
T ++ ++ R L ++ +E+++ + G+ QLAV L R+ IA
Sbjct: 186 ---TAWAEQEFEHIR-LQARQPQAESTWQDMKGI-SVLTRPPQLAVAQALWTTREAIALR 240
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
D S G VL NR L+++A+ LPT+ +L ++
Sbjct: 241 KDLSPGRVLRNRVLLDVARTLPTSPVELAKI 271
>gi|424894461|ref|ZP_18318035.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393178688|gb|EJC78727.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 381
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 123/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E DL +L D +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ E+ DP KV H A +DI + + +FDT A+ V + S + L+
Sbjct: 61 APFF-ELMADPKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVCGFGDSVSYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V+ +K + DW RPL D+ L YA D +L +Y +K +L + E +
Sbjct: 120 SRIKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAEL-----DREGRTS 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
L+E D+ ++ ++++ L+ Q+LA++ + WR+ ARA
Sbjct: 175 WLSE----EMDILEARETYDMHPDDAWQR---LKMRLRKPQELAILKYVAAWREREARAR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P L RL
Sbjct: 228 NVPRSRVLKDDAIYEIAQQQPKDTEALGRL 257
>gi|392943949|ref|ZP_10309591.1| ribonuclease D [Frankia sp. QA3]
gi|392287243|gb|EIV93267.1| ribonuclease D [Frankia sp. QA3]
Length = 520
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 117/273 (42%), Gaps = 19/273 (6%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLR-VQVGPYLREVFKDPTKKKVMH 209
A D E + L+QI R +VD + L + V ++E D + V+H
Sbjct: 46 VAFDAERASGYRYSQRAYLVQIRRRGAGSLLVDPIPLGDLSV---IQEAVGD--AEWVLH 100
Query: 210 GADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRV 269
A +D+ L + G+ +FDT A R+L ER L ++ G K + ADW
Sbjct: 101 AASQDLPCLA-ELGLRPSLLFDTELAGRLLGYERVGLGMMVERVLGYGLEKGHSAADWST 159
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
RPLP+ LRYA D L+ + D ++ +L K E ++ + +
Sbjct: 160 RPLPEPWLRYAALDVELLVELRDALEAELIEQDK---------IEFARQEFAAIAAAPPR 210
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
E +E + G+ A + +QLA V + RD +ARA D + G VLP+ +++
Sbjct: 211 EPRAE-PWRRTSGIHRA-RSRRQLAAVRAMWTARDRMARARDVAPGRVLPDSAIMDAVLN 268
Query: 390 LPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
P A L RL I R L ++++
Sbjct: 269 APADTAALIRLPIFSGPRIRRTASTWLDALRSA 301
>gi|254514489|ref|ZP_05126550.1| ribonuclease D [gamma proteobacterium NOR5-3]
gi|219676732|gb|EED33097.1| ribonuclease D [gamma proteobacterium NOR5-3]
Length = 372
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 133/298 (44%), Gaps = 24/298 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ LVE + L E L + E AVD E + ++ L+Q+ + +++D LK+
Sbjct: 3 WTLVESDEALAEALDALSNASEIAVDTEFMRRNTYYPHIALLQLCSDDHAWLIDPLKVTD 62
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY- 248
G LR + D KV+H D+ + G+ + DT +A+ +L + L Y
Sbjct: 63 LDG--LRALMTDTGCWKVLHSCSEDLEVFRHWLGVVPSPLIDTQRATALLG-KGFGLGYR 119
Query: 249 -LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK-IKLSS--MPKE 304
L+ GV +K +DW RPL D YA D L+ + I+K + LS M
Sbjct: 120 ALIELLLGVELDKGETRSDWLKRPLSDSQCHYAALDVLKLVPAWKILKDLALSQGRMEWI 179
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
+ + + + +R D+ R++ + L+ +QL + LCEWR+
Sbjct: 180 LDEGEEAIRLLNERDRDIYRRVK----------------SASRLSPRQLDALRRLCEWRE 223
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
+AR+ D+ G+++ ++ I IA+ +P L L S I + +L+ ++ +
Sbjct: 224 ALARSVDKPRGWIVEDKACIAIAQSMPADIEALTDLDVLPASVIRKQGDTLLACVRGA 281
>gi|209548705|ref|YP_002280622.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209534461|gb|ACI54396.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 381
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 123/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E DL +L D +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ E+ DP KV H A +DI + + +FDT A+ V + S + L+
Sbjct: 61 APFF-ELMADPKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVCGFGDSVSYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V+ +K + DW RPL D+ L YA D +L +Y +K +L + E +
Sbjct: 120 SRIKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAEL-----DREGRTS 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
L+E D+ +L ++++ L+ Q+LA++ + WR+ AR+
Sbjct: 175 WLSE----EMDILEARETYDLHPDDAWQR---LKMRLRKPQELAILKFVAAWREREARSR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P L RL
Sbjct: 228 NVPRSRVLKDDAIYEIAQQQPKDTEALGRL 257
>gi|386775372|ref|ZP_10097750.1| ribonuclease D [Brachybacterium paraconglomeratum LC44]
Length = 452
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 125/271 (46%), Gaps = 17/271 (6%)
Query: 143 AAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTE-DFVVDTLKLRVQVGPYLREVFKD 201
AA + AVD E + L+Q+ T ++D L + LR + +
Sbjct: 86 AAASDPTEPVAVDAERASSYRYSSRAYLVQLRTEAAGTALIDPLAF--TMPGTLRTLLAE 143
Query: 202 PTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKE 261
++ V+H A +D+ L + G++ +FDT A+R+L +ER L ++ G+ KE
Sbjct: 144 --REWVLHAAGQDLPSLA-ELGLHPGGLFDTELAARLLGMERVGLGAVVEDTLGLRLAKE 200
Query: 262 YQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYD 321
+ ADW RPLP+ L YA D L+ + D++ +L +E+ +D E +++
Sbjct: 201 HSAADWSKRPLPESWLVYAALDVEVLVQVRDVLAQRL----EEAGKADWAAREF---AHE 253
Query: 322 VCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNR 381
R E +S+ ++GL GA +QLA + RD +A D S V+ +R
Sbjct: 254 RTR---EHGPTRSSSWRGLHGL-GALRTVRQLAAAREMWTRRDELASEADLSPHRVIKDR 309
Query: 382 TLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 412
L+ AK+ P R L SK + +R+
Sbjct: 310 DLVAAAKEAPRGREAFDRALPSKMRHKDRWW 340
>gi|88856896|ref|ZP_01131548.1| ribonuclease [marine actinobacterium PHSC20C1]
gi|88813864|gb|EAR23734.1| ribonuclease [marine actinobacterium PHSC20C1]
Length = 418
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 20/218 (9%)
Query: 204 KKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 263
++ ++H A +D+ L R+ G+Y +FDT +R+ L R L ++ HF G++ KE+
Sbjct: 96 EEWILHAATQDLTCL-REVGLYPTRLFDTELGARIAGLPRVGLGTVVEHFLGIHLAKEHS 154
Query: 264 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYD-- 321
+ADW RPLP L YA D L+ + + + L S K ++ ++ +D
Sbjct: 155 SADWSTRPLPQAWLVYAALDVELLVDLREALGELLDSADKH---------DIAQQEFDSV 205
Query: 322 VCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNR 381
+ R L ++ + + G+ + LAV L RD A+ D + G ++P+
Sbjct: 206 LARDLI---IVRAEPWRRLSGVHSVR-GGKNLAVARELWVARDAYAQEVDTAPGRLVPDS 261
Query: 382 TLIEIAKQLPTTAAKLRRLL----KSKHSYIERYMGPV 415
L+ A+ LP T +L L ++ + ++R+ +
Sbjct: 262 ALVAAARVLPETKRQLSALKEFSGRASRTQLDRWWAAI 299
>gi|378754805|gb|EHY64834.1| hypothetical protein NERG_02237 [Nematocida sp. 1 ERTm2]
Length = 471
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 128/284 (45%), Gaps = 24/284 (8%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
VD++ +++RS+ G TC +Q++T ++ D ++LR L + +P+ KV + A
Sbjct: 209 IGVDIKTHKFRSYSGFTCYIQVATLESVYIFDMIELRNHSK--LLTFWSEPSIVKVFYKA 266
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRP 271
I WL++D + + D + +L + + G K+ Q DWR +P
Sbjct: 267 SEKIAWLRKDLQYTVVSYIDLLSLHGYPEEPIRNLGRAVFYSTGRQVRKKLQLMDWRYKP 326
Query: 272 LPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL 331
+ DEM E YLL L++ S ++ YK + +E
Sbjct: 327 VSDEMYTDLTEQVGYLL---------LAAAGMISRCTEKEFVSGYKYGVEAV-----QEP 372
Query: 332 LSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
L+ +L G++ + L + L RD IA+ +DES +++ +R L+ K+ P
Sbjct: 373 LTPEEFLLAKGIEP----TESLVKIVML---RDFIAKQEDESPQFLMTDRQLVRFIKEQP 425
Query: 392 TTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQK 435
++ ++ L K + M ++++ +S +++F +IA K
Sbjct: 426 SSPEQIFSLFKKISPLFKANMNNFVNLL-HSKHKSSSFNMIALK 468
>gi|418295976|ref|ZP_12907820.1| ribonuclease D [Agrobacterium tumefaciens CCNWGS0286]
gi|355539408|gb|EHH08646.1| ribonuclease D [Agrobacterium tumefaciens CCNWGS0286]
Length = 386
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 123/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E L E +L + +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTAALAEACTELAKSEFITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P L E+ +P KV H A +DI + G+ +FDT A+ V + S + L+
Sbjct: 61 TP-LFELMANPDVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVCGFGDSISYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V +K + DW RPL ++ L YA D +L +Y +K +L E E
Sbjct: 120 QKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLALKAQL-----EREGRSL 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
LTE D+ ++ ++++L L+ +LA++ + WR+ AR+
Sbjct: 175 WLTE----EMDILESRDTYDMHPDDAWLR---LKSRLRKPTELAILKFVAAWREREARSR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P A L RL
Sbjct: 228 NVPRSRVLKDDAIFEIAQQQPKDAEALSRL 257
>gi|421615623|ref|ZP_16056645.1| ribonuclease D [Pseudomonas stutzeri KOS6]
gi|409782427|gb|EKN61988.1| ribonuclease D [Pseudomonas stutzeri KOS6]
Length = 359
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 119/264 (45%), Gaps = 17/264 (6%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L L A+ + + AVD E + +F + L+Q+ +++D L +R V
Sbjct: 14 LARLCAEWRQLPYVAVDTEFMRVDTFYPIAGLVQVGDGRRAYLIDPLAVRNWTA--FAGV 71
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGV 256
+DP KV+H D+ L R G +FDT A+ L + S+ Y L+ G+
Sbjct: 72 LQDPAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIG-FSMGYSRLVQAVLGI 130
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
K +DW RPL + +RYA ED +L +Y+ + +PK SE+ L E
Sbjct: 131 ELPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEAL------LPKLSEDKRAWLLE-- 182
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
++ L ++E E +Y + Q L QQLAV+ L WR+ ARA ++
Sbjct: 183 -DGAELVANL-QRESDPEEAYREVK--QAWRLKPQQLAVLKALTAWRERQARARNQPRNR 238
Query: 377 VLPNRTLIEIAKQLPTTAAKLRRL 400
VL +L +A+ P L R+
Sbjct: 239 VLREASLWPLARTQPRDLVTLARI 262
>gi|395766197|ref|ZP_10446774.1| ribonuclease D [Bartonella sp. DB5-6]
gi|395409707|gb|EJF76293.1| ribonuclease D [Bartonella sp. DB5-6]
Length = 384
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 121/270 (44%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + DL+ A L++ D VD E + +F CL+Q+++ ++D + + +
Sbjct: 4 LITQTTDLEIALATLRTSDFITVDTEFIRETTFWPQLCLIQLASPDTTVLIDPISQDIDL 63
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ ++ D KV H A +DI + GI +FDT A + + S + ++
Sbjct: 64 QPFF-DLMVDKKVVKVFHAARQDIETIYHLGGIIPSPLFDTQIAGSICGFGDSISYDQIV 122
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G +K + DW RPL ++ L YA D YL IY ++K +L + D
Sbjct: 123 QRCTGHQLDKSSRFTDWSYRPLSEKQLLYALADVTYLRDIYLLLKKQLEKNKRIHWMDDE 182
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ ++YD L E E + G ++LAV+ + WR+ AR
Sbjct: 183 IAILLSPKTYD----LPEDEAWKKVK--------GKVKKPRELAVLQKIAAWRERKARKY 230
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ +++ + LIEIA Q P + L+RL
Sbjct: 231 NIPRRHIMKDECLIEIATQQPKDESSLKRL 260
>gi|340776383|ref|ZP_08696326.1| ribonuclease D [Acetobacter aceti NBRC 14818]
Length = 408
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 131/296 (44%), Gaps = 15/296 (5%)
Query: 131 KLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQ 190
+L+ DL E +L++ VD E + +++ CL+QI+ E ++D + +
Sbjct: 13 RLITSTTDLAETVERLRNETFVTVDTEFMREKTYWPELCLLQIAGEKEVVLIDAVAPDID 72
Query: 191 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYL 249
+ P L +F D + KV H A +D+ F +FDT A+ V ++ + L
Sbjct: 73 LTP-LTALFDDQSVVKVFHAARQDLEIFLHLFDRLPQPLFDTQVAAMVAGYGDQVGYDNL 131
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ G + +K ++ DW VRPL L YA D YL +Y+ + L + +E ++
Sbjct: 132 VGAVTGASIDKSHRFTDWSVRPLSPAQLTYAAADVTYLRLVYESL---LKQLEREGRSAW 188
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
+ D R EK+ L+ N + L ++ + WR+ A+
Sbjct: 189 VSAEQAALSDPDRLRVDPEKQW---------EKLRARTNNRRMLGILRAIAAWREREAQN 239
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP-VLSIIKNSMQ 424
+ +L + +L+EIA +P L R+ + E G +L++I++++Q
Sbjct: 240 ANIPRQRMLKDESLLEIAATVPGNTDDLARVRGVSRGFAEGRAGQDLLAVIQDAVQ 295
>gi|261414901|ref|YP_003248584.1| 3'-5' exonuclease [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|385789866|ref|YP_005820989.1| putative ribonuclease D [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371357|gb|ACX74102.1| 3'-5' exonuclease [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|302327506|gb|ADL26707.1| putative ribonuclease D [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 386
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 6/170 (3%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ LV+ + L L A L+ D AVD E + + CL+QI+ ++VD L
Sbjct: 7 YILVDSEESLANLLADLELYDMAAVDTEADSMYHYTARLCLIQITIGEHHYIVDPL---- 62
Query: 190 QVGPYLREVFKD-PTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
G L +FK + + HGAD D+ L + +G ++FDT A+++L + L
Sbjct: 63 -CGLDLAPLFKARAMQTLIFHGADYDLRLLWQTYGFSPKSIFDTMLAAKILGEQHLGLAD 121
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298
L+ + G KE Q ADW +RPL +M YA DT YL + I+ KL
Sbjct: 122 LVKEYFGDELKKENQRADWTIRPLSLDMCEYAIHDTFYLHELCAILAEKL 171
>gi|88705065|ref|ZP_01102777.1| ribonuclease D [Congregibacter litoralis KT71]
gi|88700760|gb|EAQ97867.1| ribonuclease D [Congregibacter litoralis KT71]
Length = 370
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 129/297 (43%), Gaps = 18/297 (6%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ LVE L+ A L DE AVD E + S+ L+Q+ T +++D L +
Sbjct: 3 WTLVENDDSLRGALASLAGADEIAVDTEFMRRNSYYPHIALLQLCTDDHAWLIDPLTISN 62
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY- 248
G LR + D KV+H D+ + G+ + DT +A+ +L + L Y
Sbjct: 63 LDG--LRALLTDSACIKVLHSCSEDLEVFRHWLGVLPSPLVDTQRATALLG-KGFGLGYR 119
Query: 249 -LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
L+ GV +K +DW RPL + YA D L+ + I++ E
Sbjct: 120 ALVKELLGVELDKGETRSDWLKRPLSESQCHYAALDVLELVPAWRILR--------ELAE 171
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
+ V + R L ++ + ++ + L+ +QL + LCEWR+ +A
Sbjct: 172 EQGRMQWVLDEGEEAIRLLKDR-----DGQIYRRVKSASRLSRRQLEALRRLCEWREDLA 226
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 424
RA D+ G+++ ++ + IA +P L L S + + +L+ ++ ++Q
Sbjct: 227 RAVDKPRGWIVEDKAFLAIAMAIPEDHDALAELDVLPASVLRKQGDSLLACVEQALQ 283
>gi|441517701|ref|ZP_20999435.1| putative ribonuclease D [Gordonia hirsuta DSM 44140 = NBRC 16056]
gi|441455575|dbj|GAC57396.1| putative ribonuclease D [Gordonia hirsuta DSM 44140 = NBRC 16056]
Length = 396
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 111/261 (42%), Gaps = 38/261 (14%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQIS-TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+Q+ T + F++D + + P + E + P + ++H
Sbjct: 31 IAVDTERASGYRYSQRAYLIQLKRTGSGSFLIDPIANPEALDPVI-EALRGP--EWILHA 87
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L + G +FDT A R+L L + +L ++ F + K + ADW R
Sbjct: 88 ADQDLPCLT-ELGFECTTLFDTELAGRLLNLPKVNLAAMVAEFLQLGLAKGHGAADWSHR 146
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLPD+ L YA D L+ + D M L K ++ RQ + E
Sbjct: 147 PLPDDWLNYAALDVEVLVELRDAMHSALDEAGK----------------FEWARQEFAYE 190
Query: 331 L-----------LSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 379
L S +H N +QLA+V L R+ IA D + G VLP
Sbjct: 191 LTKPPAPPRPDRWRRTSNIHTLR------NQRQLAIVRELWTAREEIAARRDVAPGRVLP 244
Query: 380 NRTLIEIAKQLPTTAAKLRRL 400
+ +I A PTT ++L L
Sbjct: 245 DSAIITAAVAAPTTESELTSL 265
>gi|256372386|ref|YP_003110210.1| 3'-5' exonuclease [Acidimicrobium ferrooxidans DSM 10331]
gi|256008970|gb|ACU54537.1| 3'-5' exonuclease [Acidimicrobium ferrooxidans DSM 10331]
Length = 396
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 119/262 (45%), Gaps = 18/262 (6%)
Query: 138 DLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQ-VGPYLR 196
DL EL V A+D E ++ R++ L+Q++ +++D L++ + + +
Sbjct: 29 DLDELVGVGLGVPRIAIDTEFHRERTYYPRLALVQVAIDRRVWLIDPLRVDLSPIAAWFD 88
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGV 256
EV + V H AD+D+ ++R G +FDT A L SL LL + GV
Sbjct: 89 EV------ELVFHAADQDLEIIERAVGARPRRIFDTQVAGGFLGAGHASLGALLDRYLGV 142
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
+ +K + +DW RPL L YA D YL + D + +L + +E V
Sbjct: 143 SISKAERTSDWLRRPLEPGQLAYAANDVRYLAALADRLLEELHARGREDWARSEMARLVE 202
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
+R D+ E EL ++ I +G +++A A + WR+ A+ DD
Sbjct: 203 RRRRDI-----EPEL----AWTRIRECRGLDPTGRRIA--ASVAAWRERTAQRDDVPVRT 251
Query: 377 VLPNRTLIEIAKQLPTTAAKLR 398
VL + + +AK P++ +LR
Sbjct: 252 VLSDLAVASVAKARPSSLTELR 273
>gi|49475730|ref|YP_033771.1| ribonuclease D [Bartonella henselae str. Houston-1]
gi|81647819|sp|Q6G329.1|RND_BARHE RecName: Full=Ribonuclease D; Short=RNase D
gi|49238537|emb|CAF27773.1| Ribonuclease D [Bartonella henselae str. Houston-1]
Length = 406
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 123/272 (45%), Gaps = 14/272 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
KL+ + DL+ A L++ D +D E + +F CL+Q+++ ++D + +
Sbjct: 24 MKLITQTTDLEIALATLRNSDFVTIDTEFIRETTFWPQLCLIQLASPDTTVLIDPISQDI 83
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEY 248
+ P+ ++ + KV H A +DI + G+ +FDT A + + S +
Sbjct: 84 DLKPFF-DLMVNKKIVKVFHAARQDIETIYHLGGVIPSPLFDTQIAGSICGFGDSISYDQ 142
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
++ G +K + DW RPL ++ L YA D YL +Y ++K +L +
Sbjct: 143 IVQRCTGYQLDKSSRFTDWSFRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRTHWMD 202
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
D + ++YD + EN ++G ++LAV+ + WR+ AR
Sbjct: 203 DEIAVLLEPKTYD----------MPENEAWK--KVKGKIKKPRELAVLQKIAAWRERKAR 250
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ +++ + LIEIA Q P A L+RL
Sbjct: 251 QYNIPRRHIIKDECLIEIAIQQPKDEADLKRL 282
>gi|381162216|ref|ZP_09871446.1| ribonuclease D [Saccharomonospora azurea NA-128]
gi|379254121|gb|EHY88047.1| ribonuclease D [Saccharomonospora azurea NA-128]
Length = 413
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 112/256 (43%), Gaps = 28/256 (10%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+QI F++D + LR + P L EV D + V+H
Sbjct: 50 LAVDTERASGYRYWPRAYLVQIRREGAGTFLIDPIPLRDHLAP-LAEVMND--VEWVLHA 106
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
A +D+ L + G+ ++FDT A R+ +R +L L+ G K + ADW R
Sbjct: 107 ASQDLPCLA-ELGLRPPSLFDTELAGRLAGHQRVALGTLVEELLGYRLEKGHSAADWSRR 165
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLP + L YA D L+ + + ++ +L++ K D RQ +E
Sbjct: 166 PLPVDWLNYAALDVELLVPLREKLEAELAASGK----------------LDWARQEFEAV 209
Query: 331 LLSE------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 384
+E + G+ A+ LA V L E RD +AR D + G +LP+ +I
Sbjct: 210 RTAEPPRPRSEPWRRTSGIHKIR-TARGLAAVRALWEARDELARKRDRAPGRILPDSAII 268
Query: 385 EIAKQLPTTAAKLRRL 400
P T +L++L
Sbjct: 269 NAVLAAPRTVTELQQL 284
>gi|424914689|ref|ZP_18338053.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM597]
gi|392850865|gb|EJB03386.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 381
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 123/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E DL +L D +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ E+ DP KV H A +DI + + +FDT A+ V + S + L+
Sbjct: 61 TPFF-ELMADPKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVCGFGDSVSYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V+ +K + DW RPL D+ L YA D +L +Y +K +L + E +
Sbjct: 120 SRIKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAEL-----DREGRTS 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
L+E D+ +L ++++ L+ Q+LA++ + WR+ AR+
Sbjct: 175 WLSE----EMDILEARETYDLHPDDAWQR---LKMRLRKPQELAILKFVAAWREREARSR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P L RL
Sbjct: 228 NVPRSRVLKDDAIYEIAQQQPKDTEALGRL 257
>gi|399043184|ref|ZP_10737609.1| ribonuclease D [Rhizobium sp. CF122]
gi|398058431|gb|EJL50329.1| ribonuclease D [Rhizobium sp. CF122]
Length = 381
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 126/270 (46%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E DL+ +L + +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTADLEAACKELAKSEFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGLDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ E+ +P KV H A +DI + G+ +FDT A+ V + S + L+
Sbjct: 61 KPFF-ELMANPAVLKVFHAARQDIEIIYNRGGLIPHPIFDTQVAAMVCGFGDSVSYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
+ GV +K + DW RPL ++ L YA D +L +Y +K +L E E +
Sbjct: 120 NRTKGVQIDKSSRFTDWSRRPLSEKQLDYALADVTHLRDVYLYLKAEL-----EREGRSS 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
L E D+ ++ ++++ L+ Q+LA++ + WR+ AR+
Sbjct: 175 WLRE----EMDILEARETYDMHPDDAWQR---LKMRLRKPQELAILKYVAAWREREARSR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + E+A+Q P A L RL
Sbjct: 228 NVPRSRVLKDDAIYEVAQQQPKDAEALGRL 257
>gi|358460925|ref|ZP_09171099.1| 3'-5' exonuclease [Frankia sp. CN3]
gi|357074601|gb|EHI84090.1| 3'-5' exonuclease [Frankia sp. CN3]
Length = 438
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 96/216 (44%), Gaps = 12/216 (5%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A +D+ L + G+ +FDT A R+L ER L ++ G K + AD
Sbjct: 98 VLHAASQDLPCLA-ELGLRPTRLFDTELAGRLLGYERVGLGMMVERVLGFGLEKGHSAAD 156
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP+ LRYA D L+ + D + +L+ E+ + L E + R+
Sbjct: 157 WSTRPLPEPWLRYAALDVELLVELRDALTAELT----ETGKLEFALQEFAAIAAAPPRE- 211
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
E S +H + +QLA V + RD IAR D + G VLP+ +I+
Sbjct: 212 PRAEPWRRTSGIH------RARSRRQLAAVRSMWTARDKIARVRDIAPGRVLPDSAIIDA 265
Query: 387 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
P AA+L +L + R G ++ + +
Sbjct: 266 VLSAPADAAELVKLPVFSGPRLRRSAGVWMTALTQA 301
>gi|288917119|ref|ZP_06411489.1| 3'-5' exonuclease [Frankia sp. EUN1f]
gi|288351488|gb|EFC85695.1| 3'-5' exonuclease [Frankia sp. EUN1f]
Length = 525
Score = 79.3 bits (194), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 92/201 (45%), Gaps = 26/201 (12%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A +D+ L + G++ ++FDT A R+L ER L ++ G K + AD
Sbjct: 133 VLHAASQDLPCLA-ELGLHPTSLFDTELAGRLLGYERVGLGAMVERVLGFALEKGHSAAD 191
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP+ LRYA D L+ + D ++ +L V + D RQ
Sbjct: 192 WSTRPLPEPWLRYAALDVELLVELRDRLEAEL----------------VERDKIDFARQE 235
Query: 327 YE-------KELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 379
+ +E +E + G+ A +QLA V + + RD +AR D + G VLP
Sbjct: 236 FAAIAAAPPREPRAE-PWRRTSGIHRARTR-RQLAAVRAMWQARDKVARTRDLAPGRVLP 293
Query: 380 NRTLIEIAKQLPTTAAKLRRL 400
+ +++ + P A L RL
Sbjct: 294 DGAIMDAVLKAPADIAALTRL 314
>gi|417860412|ref|ZP_12505468.1| ribonuclease D [Agrobacterium tumefaciens F2]
gi|338823476|gb|EGP57444.1| ribonuclease D [Agrobacterium tumefaciens F2]
Length = 386
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 123/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E L E +L + +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTAALAEACTELAKSEFITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGLDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P L E+ +P KV H A +DI + G+ +FDT A+ V + S + L+
Sbjct: 61 TP-LFELMANPNVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVCGFGDSISYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V +K + DW RPL ++ L YA D +L +Y +K +L E E
Sbjct: 120 QKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLALKAQL-----EREGRSL 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
LTE D+ ++ ++++L L+ +LA++ + WR+ AR+
Sbjct: 175 WLTE----EMDILESRDTYDMHPDDAWLR---LKSRLRKPTELAILKFVAAWREREARSR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P A L RL
Sbjct: 228 NVPRSRVLKDDAIFEIAQQQPKDAEALSRL 257
>gi|111221533|ref|YP_712327.1| ribonuclease D [Frankia alni ACN14a]
gi|111149065|emb|CAJ60747.1| Putative ribonuclease D (partial match) [Frankia alni ACN14a]
Length = 545
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 17/272 (6%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
A D E + L+QI R ++D + L ++E D + V+H
Sbjct: 65 VAFDAERASGYRYSQRAYLVQIRRRGAGSLLIDPVPLGDLT--VIQEAVGD--AEWVLHA 120
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
A +D+ L + G+ +FDT A R+L ER L ++ G K + ADW R
Sbjct: 121 ASQDLPCLA-ELGLRPALLFDTELAGRLLGYERVGLGMMVERVLGYGLEKGHSAADWSTR 179
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLP+ LRYA D L+ + D ++ +L K E ++ + +E
Sbjct: 180 PLPEPWLRYAALDVELLVELRDALEAELIEQDK---------LEFARQEFAAIVAAPPRE 230
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+E + G+ A + +QLA V + RD +AR D + G VLP+ +++
Sbjct: 231 PRAE-PWRRTSGIHRA-RSRRQLAAVRAMWTARDRMARTRDVAPGRVLPDSAIMDAVLNA 288
Query: 391 PTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
P A L RL I R L ++++
Sbjct: 289 PADTAALIRLPIFSGPRIRRTASTWLDALRSA 320
>gi|408788884|ref|ZP_11200598.1| ribonuclease D [Rhizobium lupini HPC(L)]
gi|408485322|gb|EKJ93662.1| ribonuclease D [Rhizobium lupini HPC(L)]
Length = 386
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 123/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E L E +L + +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTAALAEACTELAKSEFITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGLDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P L E+ +P KV H A +DI + G+ +FDT A+ V + S + L+
Sbjct: 61 TP-LFELMANPGVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVCGFGDSISYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V +K + DW RPL ++ L YA D +L +Y +K +L E E
Sbjct: 120 QKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLSLKAQL-----EREGRSL 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
LTE D+ ++ ++++L L+ +LA++ + WR+ AR+
Sbjct: 175 WLTE----EMDILESRDTYDMHPDDAWLR---LKSRLRKPTELAILKFIAAWREREARSR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P A L RL
Sbjct: 228 NVPRSRVLKDDAIFEIAQQQPKDAEALSRL 257
>gi|190891177|ref|YP_001977719.1| ribonuclease III protein [Rhizobium etli CIAT 652]
gi|190696456|gb|ACE90541.1| ribonuclease III protein [Rhizobium etli CIAT 652]
Length = 381
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 126/270 (46%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E DL +L D +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ E+ D KV H A +DI + + +FDT A+ V + S + L+
Sbjct: 61 APFF-ELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVCGFGDSVSYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V+ +K + DW RPL D+ L YA D +L +Y +K +L + E +
Sbjct: 120 SRIKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAEL-----DREGRTS 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
LTE + + R+ Y ++ ++++ L+ Q+LA++ + WR+ ARA
Sbjct: 175 WLTE--EMNILEARETY--DMHPDDAWQR---LKMRLRKPQELAILKYVAAWREREARAR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P A L RL
Sbjct: 228 NVPRSRVLKDDAIYEIAQQQPKDAEALGRL 257
>gi|152996550|ref|YP_001341385.1| ribonuclease D [Marinomonas sp. MWYL1]
gi|150837474|gb|ABR71450.1| ribonuclease D [Marinomonas sp. MWYL1]
Length = 384
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 111/246 (45%), Gaps = 22/246 (8%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
AVD E + ++ +T L+QIS + ++D L + + P LR + DP+ KV H
Sbjct: 37 IAVDTEFIRRTTYFPITGLIQISEGDKAVLIDPLSID-EWEP-LRNLMVDPSVMKVFHAC 94
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRV 269
D+ R G+ +DT Q + SL Y L+H + + K+ +DW
Sbjct: 95 SEDLDVFDRLLGVLPTPFYDT-QIGEAYASAQWSLSYVKLIHEYLQIEVAKDETRSDWVQ 153
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
RPL D RYA D YL +Y + +L E++N + E D + Y+
Sbjct: 154 RPLTDAQKRYAALDVVYLAKVYPMQIARL-----EAKNMLGWVME----DCDSLKWQYQM 204
Query: 330 ELLSENSYLHI---YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
E ++ I + L AGL +L + WRD AR +D G +L +RTL +
Sbjct: 205 NSDPEQNWDGIKTAWRLTPAGLTLLRLLFI-----WRDGQARKEDVPKGQILKDRTLWSL 259
Query: 387 AKQLPT 392
AK LPT
Sbjct: 260 AKTLPT 265
>gi|451942118|ref|YP_007462755.1| ribonuclease D [Bartonella vinsonii subsp. berkhoffii str. Winnie]
gi|451901505|gb|AGF75967.1| ribonuclease D [Bartonella vinsonii subsp. berkhoffii str. Winnie]
Length = 384
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 122/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + DL+ A L++ D VD E + +F CL+Q+++ ++D + + +
Sbjct: 4 LITQTTDLEIAIAALRNSDFVTVDTEFIRETTFWPQLCLIQLASPDVTILIDPIAQDINL 63
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
+ ++ D KV H A +DI + GI +FDT A + + S + ++
Sbjct: 64 QAFF-DLMVDKKIIKVFHAARQDIETIYHLGGIIPYPLFDTQIAGSICGFGDSISYDQIV 122
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G + +K + DW RPL ++ L YA D YL +Y ++K +L + D
Sbjct: 123 QRCTGHHIDKSSRFTDWSYRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRTHWMDDE 182
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ ++YD + E E ++G ++LAV+ + WR+ AR
Sbjct: 183 IAVLLAPKTYD----MPEDEAWKR--------VKGKVQKQRELAVLQKIAAWRERKARRY 230
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ +++ + LIEIA Q P A L+RL
Sbjct: 231 NIPRRHIMKDECLIEIAIQQPKDEAALKRL 260
>gi|424910030|ref|ZP_18333407.1| ribonuclease D [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392846061|gb|EJA98583.1| ribonuclease D [Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 386
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 123/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E L E +L + +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTAALAEACTELAKSEFITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGLDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P L E+ +P KV H A +DI + G+ +FDT A+ V + S + L+
Sbjct: 61 TP-LFELMANPDVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVCGFGDSISYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V +K + DW RPL ++ L YA D +L +Y +K +L E E
Sbjct: 120 QKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLSLKAQL-----EREGRSL 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
LTE D+ ++ ++++L L+ +LA++ + WR+ AR+
Sbjct: 175 WLTE----EMDILESRDTYDMHPDDAWLR---LKSRLRKPTELAILKFVAAWREREARSR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P A L RL
Sbjct: 228 NVPRSRVLKDDAIFEIAQQQPKDAEALSRL 257
>gi|359790885|ref|ZP_09293762.1| ribonuclease D, partial [Mesorhizobium alhagi CCNWXJ12-2]
gi|359253146|gb|EHK56314.1| ribonuclease D, partial [Mesorhizobium alhagi CCNWXJ12-2]
Length = 355
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 121/264 (45%), Gaps = 14/264 (5%)
Query: 138 DLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLRE 197
+L+ A L+ VD E + ++ CL+Q++ +VD L L + + P+
Sbjct: 9 ELETAIAALEKSSFVTVDTEFIRETTYWPELCLIQMAAPGVSALVDPLSLDIDLAPFF-A 67
Query: 198 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHFCGV 256
+ + KV H A +DI + G+ +FDT A+ V + S + L+ G
Sbjct: 68 LMANEAVTKVFHAARQDIEIVFHLGGLLPHPVFDTQVAAMVCGFGDSVSYDQLVQRITGA 127
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
+ +K + DWR RPL D+ L YA D +L+ +Y +K +L E +N L E
Sbjct: 128 HLDKSSRFTDWRHRPLSDKQLEYALADVTHLIEVYQHLKTQL-----ERDNRAHWLNE-- 180
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
+ R+ Y+ ++++ L+ +LAVV + WR+ AR + G
Sbjct: 181 EMEILTSRETYDPH--PDDAWKR---LKMRLRKPVELAVVQAVAAWREREARDRNVPRGR 235
Query: 377 VLPNRTLIEIAKQLPTTAAKLRRL 400
VL + + E+A+Q P AA L RL
Sbjct: 236 VLKDDAIYEVAQQQPRDAAALARL 259
>gi|444432003|ref|ZP_21227163.1| putative ribonuclease [Gordonia soli NBRC 108243]
gi|443887177|dbj|GAC68884.1| putative ribonuclease [Gordonia soli NBRC 108243]
Length = 431
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 118/272 (43%), Gaps = 16/272 (5%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQIS-TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+QI T + F++D + V + P + +V P + V+H
Sbjct: 63 IAVDTERASGYRYSQRAYLIQIRRTGSGSFLLDPIDEPVALRPVI-DVLDGP--EWVLHA 119
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L R+ ++DT A R+L L + +L ++ F G+ K + ADW R
Sbjct: 120 ADQDLPCL-RELDFVCAEVYDTELAGRLLGLPKVNLAAMVAEFLGLGLAKGHGAADWSRR 178
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLPD+ L YA D L+ + D + L K+ + ++ D +
Sbjct: 179 PLPDDWLNYAALDVEVLVELRDAIDAALVDAGKDDWAR-----QEFRHILDRPPTPPRTD 233
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+ S +H N + LA V L R+ IA D + G VLP+ ++ A
Sbjct: 234 RWRKTSNIHTVK------NVRALAGVRELWTAREEIAARRDIAPGRVLPDSAMVTAATAA 287
Query: 391 PTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
P+T +L RL R G L+ ++ +
Sbjct: 288 PSTIDELTRLPVFGGPRQRRLAGTWLTALQRA 319
>gi|367467634|ref|ZP_09467558.1| Ribonuclease D [Patulibacter sp. I11]
gi|365817309|gb|EHN12283.1| Ribonuclease D [Patulibacter sp. I11]
Length = 388
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 120/278 (43%), Gaps = 20/278 (7%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV----VDTLKLRVQVGPY 194
+ ELAA + +D E + L CL QI+ + + +D L P
Sbjct: 9 VHELAAAARETGRLGIDTEFVGEGRYRPLLCLAQIAVDAPNGIRIELLDPLVDEFDPTP- 67
Query: 195 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHH 252
L EV DP + V+H A +D+ L+R + + +FDT A+ L R + Y LL
Sbjct: 68 LAEVLADPEIEIVLHAARQDVALLKRTWKTEVRGVFDTQVAAGFAGL-RAQMGYDALLRE 126
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPL 312
V K W RPL +E RYA ED +LL + + L + ES + +
Sbjct: 127 MLRVKLQKSASFTRWEQRPLSEEQRRYAAEDVQHLLQ----LAVALQNRLVESGRLEWAV 182
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
E CR L E + + L + L+ Q AV L EWR+ A D
Sbjct: 183 EE--------CRALEEVHDSRDPADLFPRLPRIDRLDPAQRAVAYALLEWREETAEQVDR 234
Query: 373 STGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 410
VL ++TL+E+AK+ PT+ +L+++ + + R
Sbjct: 235 PPSTVLQDQTLVELAKRRPTSRERLKQIRGLSEATLHR 272
>gi|383831224|ref|ZP_09986313.1| ribonuclease D [Saccharomonospora xinjiangensis XJ-54]
gi|383463877|gb|EID55967.1| ribonuclease D [Saccharomonospora xinjiangensis XJ-54]
Length = 413
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 123/291 (42%), Gaps = 35/291 (12%)
Query: 126 EQTPFKLVEE-------VKDLKELAAKLKSVDE----FAVDLEHNQYRSFLGLTCLMQIS 174
E P L E + D EL A + E AVD E + L+QI
Sbjct: 13 ESAPLPLTEPAEGTPDVIADSGELRAACARLAEGSGALAVDTERASGYRYWPKAYLVQIR 72
Query: 175 TR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG 233
F++D + LR Q+ P L EV + + V+H A +D+ L + G+ ++FDT
Sbjct: 73 REGAGTFLIDPIPLRDQLAP-LAEVMN--SVEWVLHAASQDLPCLA-ELGLRPPSLFDTE 128
Query: 234 QASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDI 293
A R+ +R +L L+ G K + ADW RPLP E L YA D L+ +
Sbjct: 129 LAGRLAGYQRVALGTLVESLLGYRLEKGHSAADWSRRPLPVEWLNYAALDVELLVPLRAK 188
Query: 294 MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLY----EKELLSENSYLHIYGLQGAGLN 349
++ +L++ K L Y+ ++ R E S +H
Sbjct: 189 LEAELAASGK--------LDWAYQ-EFEAVRTAEPPGPRAEPWRRTSGIHKI------RT 233
Query: 350 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
A+ LA V L E RD +AR D + G +LP+ ++ P T A+L +L
Sbjct: 234 ARGLAAVRALWEERDELARRRDRAPGRILPDSAIVNAVLADPRTPAELSKL 284
>gi|86749614|ref|YP_486110.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
gi|86572642|gb|ABD07199.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
Length = 382
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 119/271 (43%), Gaps = 16/271 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + L +L S VD E + ++ L C++Q+++R E VVDTL + +
Sbjct: 3 LISTTEQLASACTRLASHPVITVDTEFLRETTYYPLLCVVQMASRDEAVVVDTLAPGIDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--L 249
P+ ++ + KV H A +DI + GI +FDT A+ VL +S+ Y L
Sbjct: 63 KPFF-DLMANENVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVLGYG-DSIAYDQL 120
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ G +K ++ DW RPL DE L YA D +L ++ + L + S+
Sbjct: 121 VERITGHRPDKTHRFTDWSRRPLTDEQLHYAVSDVTHLRDVFAALDADLKQRGRSDWVSE 180
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
++YD + E E L+ ++LAV+ + WR+ A+
Sbjct: 181 EMEVLTSPKTYD-----FHPESAWER-------LKTRVRKPKELAVLMEVAAWREQEAQT 228
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
D VL + L +IA PT+ +L L
Sbjct: 229 RDVPRSRVLKDDALGDIATHAPTSLERLANL 259
>gi|409436727|ref|ZP_11263897.1| Ribonuclease D [Rhizobium mesoamericanum STM3625]
gi|408751651|emb|CCM75051.1| Ribonuclease D [Rhizobium mesoamericanum STM3625]
Length = 381
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 126/270 (46%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E DL+ +L + +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTADLEAACKELAKSEFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGLDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ E+ +P KV H A +DI + G+ +FDT A+ V + S + L+
Sbjct: 61 KPFF-ELMANPAVLKVFHAARQDIEIIYNRGGLIPHPIFDTQVAAMVCGFGDSVSYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
GV +K + DW RPL ++ L YA D +L +Y +K +L+ +E +S
Sbjct: 120 SRTKGVQIDKSSRFTDWSRRPLSEKQLDYALADVTHLRDVYLYLKAELA---REGRSS-- 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ D+ ++ ++++ L+ Q+LA++ + WR+ AR+
Sbjct: 175 ----WLREEMDILEARDTYDMHPDDAWQR---LKMRLRKPQELAILKFVAAWREREARSR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P A L RL
Sbjct: 228 NVPRSRVLKDDAIYEIAQQQPKDAEALGRL 257
>gi|431805515|ref|YP_007232416.1| ribonuclease D [Liberibacter crescens BT-1]
gi|430799490|gb|AGA64161.1| Ribonuclease D [Liberibacter crescens BT-1]
Length = 383
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 125/288 (43%), Gaps = 41/288 (14%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++ +L+ A+L + VD E + +F CL+QI+T ++D L + +
Sbjct: 3 IITSTLELELACAELTKSNFVTVDTEFLRDVTFWPQLCLIQIATPKMGIIIDPLDSEINL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--L 249
+ + +P+ KV H A +DI + +FDT A+ V R S+ Y L
Sbjct: 63 SAFFN-LMLNPSIVKVFHAARQDIEIIFHMSRQIPTPIFDTQVAAMVCGF-RESISYDTL 120
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS---------- 299
+ G +K + +W RPL + L YA D YL IY I+K +L
Sbjct: 121 VRKLLGQQIDKSSRFTNWHQRPLSSKQLDYALADVTYLCEIYTILKAELEQTKRSEWLKE 180
Query: 300 --SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVA 357
S+ + + + P E++KR + ++ Q+LAV+
Sbjct: 181 EMSILENPQTYNLPPEEIWKRIKNRLKK------------------------PQELAVLK 216
Query: 358 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 405
+ WR+ AR+ + ++ + TLIEIA+Q P T+ + + L+S H
Sbjct: 217 YITTWREHEARSQNVPRNRIIKDETLIEIAQQQPRTSKDIEK-LRSIH 263
>gi|378549176|ref|ZP_09824392.1| hypothetical protein CCH26_03785 [Citricoccus sp. CH26A]
Length = 385
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 91/202 (45%), Gaps = 34/202 (16%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
++H A +D+ L + G++ +FDT A R+L L R L +L GV KE+ AD
Sbjct: 70 ILHAATQDLPCLS-ELGMWPDRLFDTELAGRILGLPRVGLASVLEQLLGVTLAKEHSAAD 128
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIM------KIKLSSMPKESENSDT-----PLTEV 315
W RPLP++ LRYA D L+ + M KL +E E T P T+
Sbjct: 129 WSKRPLPEDWLRYAALDVELLVELRAAMVGMLEASGKLDWAEEEFEAIRTTPLPGPRTDP 188
Query: 316 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 375
++R+ S +H QQLAVV L E R+ +AR D + G
Sbjct: 189 WRRT----------------SGMHKLR------RPQQLAVVRELWEAREALARNRDTAPG 226
Query: 376 YVLPNRTLIEIAKQLPTTAAKL 397
++P+ ++ A P+T L
Sbjct: 227 RLIPDSAIVSAAAAQPSTVPAL 248
>gi|418054044|ref|ZP_12692100.1| ribonuclease D [Hyphomicrobium denitrificans 1NES1]
gi|353211669|gb|EHB77069.1| ribonuclease D [Hyphomicrobium denitrificans 1NES1]
Length = 384
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 120/270 (44%), Gaps = 16/270 (5%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
+ +L L L D AVD E + ++F L CL+Q++ + +VD L + +
Sbjct: 4 ITTTSELAALCETLSRSDYVAVDTEFLREQTFWPLLCLIQLAGPEAEAIVDPLAPGIDLA 63
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LL 250
P+ ++ D + KV H A +DI + G+ +FD+ A+ V +S+ Y L+
Sbjct: 64 PFY-QLMADTSTVKVFHAARQDIEIVFLKSGVVPTPVFDSQVAAMVCGFG-DSISYVNLV 121
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G + +K + DW RPL + L YA D YL +Y ++ L + +
Sbjct: 122 KKTTGTDLDKSSRFTDWSRRPLSPKQLDYALADVTYLRDVYVRLRQTLDKTERTPWLQEE 181
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+YD EN++ + L+ G A L V+ L WR+ +A++
Sbjct: 182 MAVLTNPATYDTS---------PENAWQRL-KLRVKGRKA--LGVLVELAAWRERLAQSL 229
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
D G VL + L +IA Q+P + L +L
Sbjct: 230 DVPRGRVLRDDALYDIANQMPVSTEALGQL 259
>gi|404421224|ref|ZP_11002947.1| ribonuclease D [Mycobacterium fortuitum subsp. fortuitum DSM 46621]
gi|403659237|gb|EJZ13893.1| ribonuclease D [Mycobacterium fortuitum subsp. fortuitum DSM 46621]
Length = 420
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 91/196 (46%), Gaps = 14/196 (7%)
Query: 203 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 262
T + V+H AD+D+ L + G+ ++DT A R+ ER +L ++ G+ K +
Sbjct: 108 TDEWVLHAADQDLPCLS-EIGLRPGKLYDTELAGRLAGFERVNLAAMVQRLLGLQLMKGH 166
Query: 263 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV-YKRSYD 321
ADW RPLP E L YA D LL ++ ++++ +E +D E Y R+Y
Sbjct: 167 GAADWSKRPLPPEWLNYAALDVEVLLE----LRHAVAAVLEEQGKTDWAAQEFEYLRTY- 221
Query: 322 VCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNR 381
Q ++ S +H N Q LA V L RD IAR D + G +LP+
Sbjct: 222 -VAQPTRRDRWRRTSGIHKV------RNPQALAAVRELWTTRDTIARGRDIAPGRILPDS 274
Query: 382 TLIEIAKQLPTTAAKL 397
+I A P T +L
Sbjct: 275 AIINAATTDPKTVEEL 290
>gi|320103484|ref|YP_004179075.1| ribonuclease D [Isosphaera pallida ATCC 43644]
gi|319750766|gb|ADV62526.1| ribonuclease D [Isosphaera pallida ATCC 43644]
Length = 396
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 129/294 (43%), Gaps = 14/294 (4%)
Query: 131 KLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQ 190
+L+ + L++LA L++ F D E S+ + CL+Q++T ++ V+D L
Sbjct: 8 QLITGNQALRDLADHLRAEGRFGFDTEFVAEESYEPILCLIQVATASKLVVIDALAFS-D 66
Query: 191 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYL 249
+ P+ V DP + V+H D+ + G +FD A+ L SL L
Sbjct: 67 LSPFWDAVL-DPKLEVVVHAGGEDLRICKIKTGRLPERVFDVQLAAGFTGLSYPLSLTNL 125
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
GV DWR RPL + YA ED +LL + D ++ KL M + D
Sbjct: 126 AREVLGVQLVGGESRTDWRKRPLSVAQMNYALEDVRHLLDLADALRSKLERMGR----LD 181
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
+ E D+ + +++ + + GL LN + L + L EWR A+
Sbjct: 182 WVIEETRAFLDDISQNQD-----ADDRWRRLPGLHQ--LNRRGLEIARRLAEWRMEDAQI 234
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 423
++ +++ + L+ IAK+ P L L Y+ R G +++++K +M
Sbjct: 235 QNKPLRFLMKDDLLVAIAKRQPKDKRDLEALRDFNKPYLLRRSGEIIAVVKEAM 288
>gi|372269240|ref|ZP_09505288.1| ribonuclease D [Alteromonas sp. S89]
Length = 386
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 116/262 (44%), Gaps = 18/262 (6%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L EL A+ ++ A+D E + R+F L+Q+ +++D L + V L+E+
Sbjct: 31 LAELCARWRTQSAIALDTEFMRSRTFYPQPALVQVGDGKHCYLIDNLAIDNLVP--LKEL 88
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGV 256
+D K+MH D+ L+R G+ +FDT A+ + + L Y + +
Sbjct: 89 LQDTRVVKIMHSCSEDLETLERLLGVIPDPIFDTQIAAAISGMG-AGLGYAATVSQLLQI 147
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
+ K +DW RPL D YA D +L +Y I+ +L +E + D
Sbjct: 148 DLPKSETRSDWLQRPLSDSQKNYAALDVVWLPLVYGILVKRL----REQDRLDW------ 197
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIARADDESTG 375
++ C + E L+ ++GA L QLAV+ LC WR+ ARA D
Sbjct: 198 --LWEDCTAMVAAARQPEPPALYYRKVKGAWRLRQNQLAVLQDLCAWREREARARDMPRN 255
Query: 376 YVLPNRTLIEIAKQLPTTAAKL 397
+++ + +A+ +P A L
Sbjct: 256 HLIKENVCMALAQHMPKYLATL 277
>gi|240850739|ref|YP_002972139.1| ribonuclease D [Bartonella grahamii as4aup]
gi|240267862|gb|ACS51450.1| ribonuclease D [Bartonella grahamii as4aup]
Length = 384
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 122/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + DL+ L++ D VD E + +F CL+Q+++ ++D + + +
Sbjct: 4 LITQTTDLEIALNALRTSDFVTVDTEFIRETTFWPQLCLIQLASPDVTVLIDPIAPDIDL 63
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ ++ D KV H A +DI + G+ +FDT A + + S + ++
Sbjct: 64 QPFF-DLMIDKKVVKVFHAARQDIETIYHLGGVIPSPLFDTQIAGSICGFGDSISYDQIV 122
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G + +K + DW RPL ++ L YA D YL +Y ++K +L + D
Sbjct: 123 QRCTGHHLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKRLEKNQRAHWMDDE 182
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ ++YD+ K+ ++G ++LAV+ + WR+ AR
Sbjct: 183 LTILLNPKTYDMPEDEAWKK------------VKGQIKKPRELAVLQKIAAWREREARRY 230
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ +++ + LIEIA Q P + L+RL
Sbjct: 231 NMPRRHIIKDECLIEIATQQPKDESALKRL 260
>gi|405379973|ref|ZP_11033818.1| ribonuclease D [Rhizobium sp. CF142]
gi|397323588|gb|EJJ27981.1| ribonuclease D [Rhizobium sp. CF142]
Length = 383
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E DL +L D +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTVEVLVDPLAKDIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ E+ +P KV H A +DI + + +FDT A+ V + S + L+
Sbjct: 61 APFF-ELMANPNVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVCGFGDSVSYDQLI 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V+ +K + DW RPL D+ L YA D +L Y +K +L E E +
Sbjct: 120 SRTKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDAYLYLKTEL-----EREGRAS 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
L E D+ ++ ++++ L+ Q+LA++ + WR+ AR+
Sbjct: 175 WLRE----EMDILESRETYDIHPDDAWQR---LKLRLRKPQELAILKYVAAWREREARSR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P A L RL
Sbjct: 228 NVPRSRVLKDDAIYEIAQQQPKDAEALGRL 257
>gi|417095218|ref|ZP_11958232.1| ribonuclease III protein [Rhizobium etli CNPAF512]
gi|327194287|gb|EGE61150.1| ribonuclease III protein [Rhizobium etli CNPAF512]
Length = 381
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 126/270 (46%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E DL +L D +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ E+ D KV H A +DI + + +FDT A+ V + S + L+
Sbjct: 61 APFF-ELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVCGFGDSVSYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V+ +K + DW RPL D+ L YA D +L +Y +K +L + E +
Sbjct: 120 SRIKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAEL-----DREGRTS 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
LTE + + R+ Y ++ ++++ L+ Q+LA++ + WR+ ARA
Sbjct: 175 WLTE--EMNILEARETY--DMHPDDAWQR---LKMRLRKPQELAILKYVAAWREREARAR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + E+A+Q P A L RL
Sbjct: 228 NVPRSRVLKDDAIYEVAQQQPKDAEALGRL 257
>gi|379057275|ref|ZP_09847801.1| 3'-5' exonuclease [Serinicoccus profundi MCCC 1A05965]
Length = 421
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 14/193 (7%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A +DI L + G+ +FDT +R+ L R L +L ++ GV KE+ D
Sbjct: 100 VLHAATQDIPCLA-ELGLRPRALFDTELGARLAGLPRVGLSAVLEYYLGVTLAKEHSAVD 158
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK--ESENSDTPLTEVYKRSYDVCR 324
W RPLP+ LRYA D L+ + D M+ L K +E L E +
Sbjct: 159 WSTRPLPEPWLRYAALDVELLVELRDRMERDLREQGKLDWAEQEFAALCEFTGPAGS--- 215
Query: 325 QLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 384
E E + +H + LA + L + RD IA+ D G VLP+ TL+
Sbjct: 216 --EEPEAWRRTTGVHRLR------KRRSLAALRELWQTRDTIAQERDVPPGRVLPDGTLL 267
Query: 385 EIAKQLPTTAAKL 397
++A+++P AA L
Sbjct: 268 DLAQRMPRQAAAL 280
>gi|260433597|ref|ZP_05787568.1| ribonuclease D [Silicibacter lacuscaerulensis ITI-1157]
gi|260417425|gb|EEX10684.1| ribonuclease D [Silicibacter lacuscaerulensis ITI-1157]
Length = 424
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 133/307 (43%), Gaps = 30/307 (9%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTED----FVVDTL 185
K +E+ D LAA V VD E + R++ CL+Q++ +ED +VD L
Sbjct: 43 LKTTQELADFCRLAANFPYV---TVDTEFLRERTYYSKLCLIQMAVPSEDEDSAVLVDPL 99
Query: 186 KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERN 244
+ + P L E+F++ KV H A +D+ + GI+ +FDT A+ V E+
Sbjct: 100 ADGLSLDP-LYELFQNEDVVKVFHAARQDLEIFWVEAGIFPKPLFDTQVAAMVCGFGEQV 158
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
E L+ C +K + DW RPL D YA D +L IY+ + +L +
Sbjct: 159 GYETLVRKICKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELEKTGRS 218
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
++ +YD+ E ++ + +G + LAVV L ++R+
Sbjct: 219 RWVAEELRVLTNPETYDI---------RPEEAWRRVKTRTNSG---KFLAVVRELAKFRE 266
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKL---RRLLKSKHSYIERYMGPVLSIIKN 421
A+ ++ V + LIE+A P T A L R LL+ E GP+ I
Sbjct: 267 GYAQENNIPRNRVFKDDALIELASTKPRTHADLGGSRLLLR------EARKGPIADGILE 320
Query: 422 SMQNAAN 428
+++ N
Sbjct: 321 AVKRGVN 327
>gi|410624162|ref|ZP_11334969.1| ribonuclease D [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410156244|dbj|GAC30343.1| ribonuclease D [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 388
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 143/303 (47%), Gaps = 22/303 (7%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
F+ ++ + L + A++ + D A+D E + R+ + L+Q+ ++D + L
Sbjct: 3 FEYIDTPEALSDYCARIATADALAIDTEFVRTRTLVPQLGLIQVYDGEHLGLIDPVALDD 62
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY- 248
E+ +P+ KV+H D+ L + + +FD+ A+ +L + + +L Y
Sbjct: 63 LSA--FNEILVNPSIIKVLHSCSEDLDALWFNLKVIPAPLFDSQFAANLLDMGQ-TLGYA 119
Query: 249 -LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK-ESE 306
L+ V+ +K DW RPL E L+YA D YLL +Y + K+ + + E
Sbjct: 120 NLVEQMLNVHVDKGESRTDWIARPLSVEQLKYAAADVFYLLPVYRQLAAKIQEIGQTEWV 179
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
+++ + KR+ E+ S+ +YL I G ++Q + + WR
Sbjct: 180 FAESDFLSLKKRA----------EVPSDLAYLSIKNNWKIGAQSRQ--ALKEIASWRLQQ 227
Query: 367 ARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL--LKSKHSYIERYMGPVLSIIKNSMQ 424
A+ D + +VL + ++E+A +LP AKL +L + K + I + +L +++N++
Sbjct: 228 AQKRDMAINFVLREQGMLEVAMKLPENKAKLFQLESITPKEARI--HTDTLLELVQNALN 285
Query: 425 NAA 427
AA
Sbjct: 286 TAA 288
>gi|405983331|ref|ZP_11041637.1| ribonuclease D [Slackia piriformis YIT 12062]
gi|404388937|gb|EJZ84018.1| ribonuclease D [Slackia piriformis YIT 12062]
Length = 382
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 122/263 (46%), Gaps = 24/263 (9%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
K LKE A K AVD E + +++ CL+Q++T VD +++ + P +
Sbjct: 7 KQLKEFVAHAKQSSVLAVDTEFLREKTYWPKLCLIQLATEEVSVAVDPFEIK-DLTPLI- 64
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY----LLHH 252
++F D + K+ H A +D+ + G+ +FDT A+ +L ++L+ L+
Sbjct: 65 DLFVDESITKLFHAAVQDMELIVHALGVVPKPVFDTQVAASLLG---DTLQIGYGALVMS 121
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES--ENSDT 310
CGV K DW RPL D + YA +D YL +Y MK KL + + S +
Sbjct: 122 ECGVRLKKADSFTDWSRRPLTDSQIEYALDDVIYLPMLYRSMKKKLEELGRLSWLDRDFD 181
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
L+++ R Y V + K L N L+++QL+ + WR+ +A
Sbjct: 182 DLSDI--RRYTVDPRTRFKRLKRVNQ-----------LSSKQLSAAREIAAWREELAMKR 228
Query: 371 DESTGYVLPNRTLIEIAKQLPTT 393
+ ++L + +IEI K+ P +
Sbjct: 229 NIPRKWILSDEQVIEICKREPRS 251
>gi|377561634|ref|ZP_09791077.1| ribonuclease D [Gordonia otitidis NBRC 100426]
gi|377521196|dbj|GAB36242.1| ribonuclease D [Gordonia otitidis NBRC 100426]
Length = 436
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 128/291 (43%), Gaps = 23/291 (7%)
Query: 116 DVEAVKPPSLEQTPFKLVEEV----KDLKELAAKLKS-VDEFAVDLEHNQYRSFLGLTCL 170
+ EAV P L TP V V + E+A +L + AVD E + L
Sbjct: 22 EAEAVVEPLL--TPVDGVPPVLSHATEFAEVAERLAAGTGPIAVDTERASGYRYSQRAYL 79
Query: 171 MQIS-TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 229
+Q+ + F++D + + P + E P + V+H AD+D+ L R+ G +
Sbjct: 80 VQLRRAGSGSFLLDPISEPDALAPVI-EALDGP--EWVLHAADQDLPCL-RELGFRCETV 135
Query: 230 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 289
FDT A R+L + + +L ++ F G+ K + ADW RPLPD+ L YA D L+
Sbjct: 136 FDTELAGRLLGVPKVNLAAMVSTFLGLGLQKGHGAADWSRRPLPDDWLNYAALDVEVLVE 195
Query: 290 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 349
+ D ++ L K D E ++ D + + +H +
Sbjct: 196 LRDAVQQALLEAGK-----DEWAREEFRYVLDRPAPAPRTDRWRRTANVHTVK------S 244
Query: 350 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ LA V L R+ +A+ D + G VLP+ ++ A +PT+ A L RL
Sbjct: 245 PRSLAAVRELWTAREELAQRRDVAPGRVLPDSAIVTAANAMPTSIADLTRL 295
>gi|54025710|ref|YP_119952.1| RNase D [Nocardia farcinica IFM 10152]
gi|54017218|dbj|BAD58588.1| putative RNase D [Nocardia farcinica IFM 10152]
Length = 424
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 109/256 (42%), Gaps = 28/256 (10%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQIS-TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+Q+ F+VD + + +GP L E D + V+H
Sbjct: 51 LAVDAERASGFRYSARAYLIQLRRAGAGTFLVDPIPVADALGP-LAEAIND--LEWVLHS 107
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L + G+ +FDT R+ ER L ++ G K + ADW R
Sbjct: 108 ADQDLPGLA-ELGLRPARLFDTELGGRLAGFERVGLAAMVERLLGRTLRKGHGAADWSTR 166
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK------ESENSDTPLTEVYKRSYDVCR 324
PLP E L YA D LL + D + +L K E E+ T TE D R
Sbjct: 167 PLPAEWLNYAALDVELLLELRDAVAAELQRQGKSDWAAQEFEHVRT--TEPPAPKADRWR 224
Query: 325 QLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 384
+ S +H +QLA+V L RD +AR+ D + +LP+ ++
Sbjct: 225 R---------TSGIHTL------RKPRQLAIVRELWTTRDTLARSRDIAPARILPDGAIV 269
Query: 385 EIAKQLPTTAAKLRRL 400
A P + A+LR L
Sbjct: 270 AAAAADPRSIAQLRAL 285
>gi|158316934|ref|YP_001509442.1| 3'-5' exonuclease [Frankia sp. EAN1pec]
gi|158112339|gb|ABW14536.1| 3'-5' exonuclease [Frankia sp. EAN1pec]
Length = 499
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 12/194 (6%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A +D+ L + G+ +FDT A R+L ER L ++ G K + AD
Sbjct: 137 VLHAASQDLPCLA-ELGLRPKTLFDTELAGRLLGYERVGLGAMVERVLGFGLEKGHSAAD 195
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP+ LRYA D L+ + D ++ +L + K + ++ +D
Sbjct: 196 WSNRPLPEPWLRYAALDVELLVELRDQLESELVAQNKMA---------FARQEFDAIAAA 246
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
+E +E + G+ A + +QLA V + + RD +AR D + G VLP+ +++
Sbjct: 247 PPREPRAE-PWRRTSGIHRA-RSRRQLAAVRSMWQARDRVARTRDIAPGRVLPDIAIMDA 304
Query: 387 AKQLPTTAAKLRRL 400
+ P AA L RL
Sbjct: 305 VLKAPEDAAALTRL 318
>gi|402486257|ref|ZP_10833089.1| ribonuclease D [Rhizobium sp. CCGE 510]
gi|401814913|gb|EJT07243.1| ribonuclease D [Rhizobium sp. CCGE 510]
Length = 381
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 122/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E DL +L D +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ E+ D KV H A +DI + + +FDT A+ V + S + L+
Sbjct: 61 SPFF-ELMADSKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVCGFGDSVSYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V+ +K + DW RPL D+ L YA D +L +Y +K +L + E +
Sbjct: 120 SRIKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAQL-----DREGRTS 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
L+E DV ++ ++++ L+ Q+LAV+ + WR+ ARA
Sbjct: 175 WLSE----EMDVLEARETYDMHPDDAWQR---LKMRLRKPQELAVLKYVAAWREREARAR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P L RL
Sbjct: 228 NVPRSRVLKDDAIYEIAQQQPKDTEALGRL 257
>gi|325292526|ref|YP_004278390.1| Ribonuclease D [Agrobacterium sp. H13-3]
gi|418406679|ref|ZP_12979998.1| ribonuclease D [Agrobacterium tumefaciens 5A]
gi|325060379|gb|ADY64070.1| Ribonuclease D [Agrobacterium sp. H13-3]
gi|358007172|gb|EHJ99495.1| ribonuclease D [Agrobacterium tumefaciens 5A]
Length = 386
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E L E +L + +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTAALAEACTELAKSEFITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGLDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P L E+ +P KV H A +DI + G+ +FDT A+ V + S + L+
Sbjct: 61 TP-LFELMANPDVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVCGFGDSISYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V +K + DW RPL ++ L YA D +L +Y +K +L E E
Sbjct: 120 QRIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLALKAQL-----EREGRSL 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
LTE D+ ++ ++++L L+ +LA++ + WR+ AR+
Sbjct: 175 WLTE----EMDILESRETYDMHPDDAWLR---LKSRLRKPTELAILKFVAAWREREARSR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P L RL
Sbjct: 228 NVPRSRVLKDDAIFEIAQQQPKDTEALSRL 257
>gi|212715679|ref|ZP_03323807.1| hypothetical protein BIFCAT_00579 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661046|gb|EEB21621.1| hypothetical protein BIFCAT_00579 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 431
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 102/232 (43%), Gaps = 34/232 (14%)
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
D G+ +FDT A+R+L ++R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 108 DLGLKPQRLFDTEIAARLLGMKRFGLAAVTEHYLGLTLAKEHSAADWSYRPLPRDWRNYA 167
Query: 281 REDTHYLLYIYDIMKIKLSSMPK---ESENSDTPLTE--VYKRSYDVCRQLYEKELLSEN 335
D L+ + IM+ +L K E D L E ++ + V
Sbjct: 168 ALDVELLIELETIMRAELRRQGKIEWAEEEFDYALREGTAPRKEHPV------------- 214
Query: 336 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 395
+L I + + Q LAV L RD +AR D S +L +RT+IE+A++ P AA
Sbjct: 215 PWLRISHITEIMKDRQALAVAKALWTKRDELARQYDISPTLLLADRTIIEVAERKPHNAA 274
Query: 396 KLRRLLK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKL 436
+ R + + ERY P+ IK SM ++I Q L
Sbjct: 275 QFRAVRSINERVRIQADAEQEKMFERY-APIQRKIKPSMWK----KIIQQAL 321
>gi|418463537|ref|ZP_13034542.1| ribonuclease D [Saccharomonospora azurea SZMC 14600]
gi|359732844|gb|EHK81852.1| ribonuclease D [Saccharomonospora azurea SZMC 14600]
Length = 395
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 112/256 (43%), Gaps = 28/256 (10%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+QI F++D + LR + P L EV D + V+H
Sbjct: 32 LAVDTERASGYRYWPRAYLVQIRREGAGTFLIDPIPLRDHLAP-LAEVMND--VEWVLHA 88
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
A +D+ L + G+ ++FDT A R+ +R +L L+ G K + ADW R
Sbjct: 89 ASQDLPCLA-ELGLRPPSLFDTELAGRLAGHQRVALGTLVEELLGYRLEKGHSAADWSRR 147
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLP + L YA D L+ + + ++ +L++ K D RQ +E
Sbjct: 148 PLPVDWLNYAALDVELLVPLREKLEAELAASGK----------------LDWARQEFEAV 191
Query: 331 LLSE------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 384
+E + G+ A+ LA V L E RD +AR D + G +LP+ +I
Sbjct: 192 RTAEPPRPRSEPWRRTSGIHKIR-TARGLAAVRALWEARDELARKRDRAPGRILPDSAII 250
Query: 385 EIAKQLPTTAAKLRRL 400
P T +L++L
Sbjct: 251 NAVLADPRTVTELQQL 266
>gi|335035213|ref|ZP_08528556.1| ribonuclease D [Agrobacterium sp. ATCC 31749]
gi|333793644|gb|EGL64998.1| ribonuclease D [Agrobacterium sp. ATCC 31749]
Length = 388
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 122/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E L E +L + +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTAALAEACTELAKSEFITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P E+ +P KV H A +DI + G+ +FDT A+ V + S + L+
Sbjct: 61 TPMF-ELMANPNVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVCGFGDSISYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V +K + DW RPL ++ L YA D +L +Y +K +L E E
Sbjct: 120 QKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLALKAQL-----EREGRSL 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
LTE ++ ++ ++++L L+ +LA++ + WR+ AR+
Sbjct: 175 WLTE----EMNILESRDTYDMHPDDAWLR---LKSRLRKPTELAILKFVAAWREREARSR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P A L RL
Sbjct: 228 NVPRSRVLKDDGIFEIAQQQPKDAEALSRL 257
>gi|427390129|ref|ZP_18884535.1| hypothetical protein HMPREF9233_00038 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425733144|gb|EKU95950.1| hypothetical protein HMPREF9233_00038 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 409
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 149/343 (43%), Gaps = 35/343 (10%)
Query: 137 KDLKELAAKLKS-VDEFAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLRVQVGPY 194
+D+ A+L + FA+D E + L+QI F+VD + + ++G
Sbjct: 28 QDIDAAVARLAAGTGAFAIDTERAMGIRYSARAYLIQIRREGAGTFLVDPVNIEDRLGG- 86
Query: 195 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 254
L E+ T + ++H AD+D+ L + G+ N+FDT A +L E SL++ L
Sbjct: 87 LTELLA--TDQWILHAADQDLPSLY-ELGLRCTNLFDTEIAGMILGFEHLSLQWELEELL 143
Query: 255 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 314
GV+ KE+ N+DW RPL E+ YA D L+ ++ + + T E
Sbjct: 144 GVHLAKEHANSDWSARPLAPELRSYAALDVELLI------PLRDRLLELLDDAGRTAWCE 197
Query: 315 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL-NAQQLAVVAGLCEWRDVIARADDES 373
C + + AG+ + + LA++ L RD +AR D +
Sbjct: 198 ------QECEHIRTAPPKKPKPDPWRKPAKAAGIRDRRTLAILRELWFARDEVARTMDIA 251
Query: 374 TGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIA 433
TG V+P++ L +A + P + A + K + +RY P+ + + N E+ A
Sbjct: 252 TGKVIPDKALGALAARRPRSLADVENTPTLKRAGRKRYARPLWKGVARAW-NLDEAELPA 310
Query: 434 QKLKE------------ERMEVASEETEVL---VLDTSSNLKI 461
+L + EVA+E E++ VL+ ++ L I
Sbjct: 311 ARLPRSSSYPSSTQNWNKHNEVAAERWEIIRPAVLERAAELGI 353
>gi|319405613|emb|CBI79236.1| Ribonuclease D [Bartonella sp. AR 15-3]
Length = 383
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 123/279 (44%), Gaps = 14/279 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+L+ DL+ A L+ + VD E + +F CL+Q+++ ++D + +
Sbjct: 1 MRLITNTIDLEIAIAALRKSNFVTVDTEFIRETTFWPQLCLIQVASSDVTILIDPMAQDI 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEY 248
+ P+ ++ D KV H A +DI + G+ +FDT A + + S +
Sbjct: 61 NLQPFF-DLMIDKKIVKVFHAARQDIEIIYHLGGVIPSPLFDTQVAGSICGFGDSISYDQ 119
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
++ G + +K + DW RPL ++ L YA D YL +Y ++K +L + +
Sbjct: 120 IVQRCTGHHLDKSSRFTDWSCRPLSEKQLLYALADVTYLREVYLVLKKQLEEKKRTHWMN 179
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
D + +YD+ EN ++G ++LAV+ + WR+ A
Sbjct: 180 DEMAILLTPTTYDI----------PENEAWK--KIKGKITKKRELAVLQKIAAWREREAH 227
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 407
+ +++ + LIEIA Q P A L+RL S+
Sbjct: 228 KYNTPRRHIMKDECLIEIAIQQPKNEAALKRLRSINKSW 266
>gi|384566551|ref|ZP_10013655.1| ribonuclease D [Saccharomonospora glauca K62]
gi|384522405|gb|EIE99600.1| ribonuclease D [Saccharomonospora glauca K62]
Length = 413
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 119/268 (44%), Gaps = 24/268 (8%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+QI F++D + LR + P L EV KD + V+H
Sbjct: 50 LAVDTERASGYRYWPKAYLVQIRREGAGTFLIDPIALRNDLAP-LAEVMKD--VEWVLHA 106
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
A +D+ L + G+ ++FDT A R+ +R L L+ G K + ADW R
Sbjct: 107 ASQDLPCLA-ELGLRPPSLFDTELAGRLAGHQRVGLGTLVEELLGYRLEKGHSAADWSRR 165
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLP + L YA D L+ + D ++ +L++ K E + ++ R
Sbjct: 166 PLPIDWLNYAALDVELLVPLRDKLEAELAAAGK---------LEWALQEFEAVRTAEPPA 216
Query: 331 LLSENSYLH--IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 388
E I+ ++ + LA V L E RD +AR D + G +LP+ +I A
Sbjct: 217 PRPEPWRRTSGIHKIR----TPRGLAAVRALWEARDELARKRDRAPGRILPDSAIINAAL 272
Query: 389 QLPTTAAKLRRLL----KSKHSYIERYM 412
P + A+L++L + + Y R++
Sbjct: 273 ADPRSPAELQKLPVFGGRVQRRYTTRWL 300
>gi|433647366|ref|YP_007292368.1| ribonuclease D [Mycobacterium smegmatis JS623]
gi|433297143|gb|AGB22963.1| ribonuclease D [Mycobacterium smegmatis JS623]
Length = 422
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 91/198 (45%), Gaps = 12/198 (6%)
Query: 203 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 262
T + V+H AD+D+ L + GI ++DT A R+ +R +L ++ G+ K +
Sbjct: 108 TDEWVLHAADQDLPCLA-EIGIRPPKLYDTELAGRLAGYDRVNLAAMVQRLLGLQLMKGH 166
Query: 263 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 322
ADW RPLPDE L YA D LL + D + L+ K T+ + ++
Sbjct: 167 GAADWSKRPLPDEWLNYAALDVEVLLDLRDAIADVLAEQGK---------TDWAAQEFEF 217
Query: 323 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 382
R YE + + G+ N + LA V L + RD IAR D + G +LP+
Sbjct: 218 VRT-YEATPTRRDRWRRTSGIHKVR-NPRALAAVRELWQTRDHIARRRDIAPGRILPDAA 275
Query: 383 LIEIAKQLPTTAAKLRRL 400
+I A P + KL L
Sbjct: 276 IINAATVNPDSIEKLTEL 293
>gi|182412681|ref|YP_001817747.1| 3'-5' exonuclease [Opitutus terrae PB90-1]
gi|177839895|gb|ACB74147.1| 3'-5' exonuclease [Opitutus terrae PB90-1]
Length = 391
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 6/173 (3%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ L+++ L L A L VDE A+D E + + CL+Q E F+VD L
Sbjct: 25 YVLIDQPGQLAPLLAALDRVDEVALDTEADNMFHYRTRVCLLQFLVGREIFLVDVLAPLP 84
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLC-NMFDTGQASRVLKLERNSLEY 248
G + R K +MHG+D D+ L DF + ++FDT A++++ R L
Sbjct: 85 FEGLWARLA----EKNLIMHGSDFDLRLLH-DFCRFRPKSIFDTMLAAQLINRPRIGLAS 139
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
LL GV +KE Q A+W RPL +ML YA D +L + DI+ +L+ +
Sbjct: 140 LLEDHFGVKLSKESQKANWSKRPLTKKMLDYAALDVFHLPALRDILTRELTKL 192
>gi|225156183|ref|ZP_03724663.1| 3'-5' exonuclease [Diplosphaera colitermitum TAV2]
gi|224803073|gb|EEG21316.1| 3'-5' exonuclease [Diplosphaera colitermitum TAV2]
Length = 389
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 9/181 (4%)
Query: 121 KPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDF 180
+PP+ ++L+++ L A L V E A+D E + + CL+Q E +
Sbjct: 25 RPPT-----YQLIDQPAQLAPFLAALDRVKEVALDTEADNMYHYQTRVCLLQFLIDGEVW 79
Query: 181 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 240
+VD L + + P ++ TK VMHG+D D+ L G ++FDT A+++L
Sbjct: 80 LVD-LMTPLPLKPLWEKL---ATKHLVMHGSDFDLRLLHDLCGFRPKSLFDTMLAAQLLN 135
Query: 241 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300
+R L LL GV +K Q A+W RPL ++L YA D +L + DI+ +LS
Sbjct: 136 RQRIGLAALLSEHFGVTLDKGGQKANWSKRPLTPKLLDYASLDVWHLPALRDILTRELSR 195
Query: 301 M 301
+
Sbjct: 196 L 196
>gi|392550649|ref|ZP_10297786.1| RNase D, processing tRNA s [Pseudoalteromonas spongiae
UST010723-006]
Length = 375
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 137/328 (41%), Gaps = 30/328 (9%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVD-TLKLR 188
+ + E ++L A + AVD E + R+ L+QI ++D TL L
Sbjct: 3 YSFITEQQELDSAVASYNNKSVLAVDTEFMRRRTLYPELALLQIYDGDRICLIDPTLDLD 62
Query: 189 VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
+ ++ ++P KV+H D+ R +FDT A +L ERN + +
Sbjct: 63 LSS---FWQLMENPNIIKVLHSPSEDLEVFARHGNCTPAPLFDTQFALSLLG-ERNCVGF 118
Query: 249 --LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++ +K +W RPL L YA D YL+ ++I+K KL
Sbjct: 119 ANMVEMLLEEQIDKSESRTNWLQRPLTKAQLDYAAADVFYLMPCFNIIKEKL-------- 170
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
N D + + ++ YE L E +YL I LN +QLAV+ L WR
Sbjct: 171 NDDKQGIVFGESAVIANKRKYETPL--ELAYLDIKN--AWQLNPKQLAVLQQLAAWRLNR 226
Query: 367 ARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK------ 420
AR + + +++ L EIAK PT L+RL + + RY +L+++K
Sbjct: 227 AREKNLALNFIVKEHILFEIAKTQPTHFGALKRLCEGDQGLLNRYGKTLLNLVKIGLDKD 286
Query: 421 -----NSMQNAANFEVIAQKLKEERMEV 443
+Q +F + LKE R E+
Sbjct: 287 EAEHPEKIQRLIDFHGYKKTLKELRAEL 314
>gi|319407179|emb|CBI80818.1| Ribonuclease D [Bartonella sp. 1-1C]
Length = 383
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 122/279 (43%), Gaps = 14/279 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+L+ DL+ A L+ + VD E + +F CL+Q++++ ++D + +
Sbjct: 1 MELITNTIDLEISIAALRKSNFVTVDTEFIRETTFWPQLCLIQVASQDITILIDPMVQDI 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEY 248
+ P+ ++ D KV H A +DI + GI +FDT A + + S +
Sbjct: 61 NLQPFF-DLMIDKKVVKVFHAARQDIEIIYHLGGIIPSPLFDTQVAGSICGFGDSISYDQ 119
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
++ G + +K + DW RPL ++ L YA D YL +Y +K +L +
Sbjct: 120 IVQRCTGHHLDKSSRFTDWSCRPLSEKQLLYAVSDVTYLRDVYLALKKQLEEKKRTHWMH 179
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
D + +YD+ EN ++G ++LAV+ + WR+ AR
Sbjct: 180 DEMTLLLTPTTYDI----------PENEAWK--KVKGRITKKRELAVLQKIAAWREREAR 227
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 407
+ +++ + LIEIA Q P A L RL S+
Sbjct: 228 QYNVPRRHIMKDECLIEIAIQQPKDEAALYRLRSINKSW 266
>gi|159184639|ref|NP_354170.2| ribonuclease D [Agrobacterium fabrum str. C58]
gi|159139937|gb|AAK86955.2| ribonuclease D [Agrobacterium fabrum str. C58]
Length = 388
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 122/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E L E +L + +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTAALAEACTELAKSEFITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P E+ +P KV H A +DI + G+ +FDT A+ V + S + L+
Sbjct: 61 TPMF-ELMANPNVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVCGFGDSISYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V +K + DW RPL ++ L YA D +L +Y +K +L E E
Sbjct: 120 QKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLSLKAQL-----EREGRSL 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
LTE ++ ++ ++++L L+ +LA++ + WR+ AR+
Sbjct: 175 WLTE----EMNILESRDTYDMHPDDAWLR---LKSRLRKPTELAILKFVAAWREREARSR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P A L RL
Sbjct: 228 NVPRSRVLKDDGIFEIAQQQPKDAEALSRL 257
>gi|365870911|ref|ZP_09410452.1| hypothetical protein MMAS_28540 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|397679858|ref|YP_006521393.1| ribonuclease D [Mycobacterium massiliense str. GO 06]
gi|414584634|ref|ZP_11441774.1| ribonuclease III [Mycobacterium abscessus 5S-1215]
gi|418247873|ref|ZP_12874259.1| 3'-5' exonuclease [Mycobacterium abscessus 47J26]
gi|420878742|ref|ZP_15342109.1| ribonuclease III [Mycobacterium abscessus 5S-0304]
gi|420885673|ref|ZP_15349033.1| ribonuclease III [Mycobacterium abscessus 5S-0421]
gi|420889577|ref|ZP_15352925.1| ribonuclease III [Mycobacterium abscessus 5S-0422]
gi|420896274|ref|ZP_15359613.1| ribonuclease III [Mycobacterium abscessus 5S-0708]
gi|420899545|ref|ZP_15362877.1| ribonuclease III [Mycobacterium abscessus 5S-0817]
gi|420906083|ref|ZP_15369401.1| ribonuclease III [Mycobacterium abscessus 5S-1212]
gi|420932091|ref|ZP_15395366.1| ribonuclease III [Mycobacterium massiliense 1S-151-0930]
gi|420938975|ref|ZP_15402244.1| ribonuclease III [Mycobacterium massiliense 1S-152-0914]
gi|420942348|ref|ZP_15405605.1| ribonuclease III [Mycobacterium massiliense 1S-153-0915]
gi|420946622|ref|ZP_15409872.1| ribonuclease III [Mycobacterium massiliense 1S-154-0310]
gi|420952608|ref|ZP_15415852.1| ribonuclease III [Mycobacterium massiliense 2B-0626]
gi|420956777|ref|ZP_15420014.1| ribonuclease III [Mycobacterium massiliense 2B-0107]
gi|420961845|ref|ZP_15425070.1| ribonuclease III [Mycobacterium massiliense 2B-1231]
gi|420972953|ref|ZP_15436146.1| ribonuclease III [Mycobacterium abscessus 5S-0921]
gi|420992736|ref|ZP_15455883.1| ribonuclease III [Mycobacterium massiliense 2B-0307]
gi|420998587|ref|ZP_15461724.1| ribonuclease III [Mycobacterium massiliense 2B-0912-R]
gi|421003024|ref|ZP_15466148.1| ribonuclease III [Mycobacterium massiliense 2B-0912-S]
gi|421049988|ref|ZP_15512982.1| ribonuclease III [Mycobacterium massiliense CCUG 48898 = JCM 15300]
gi|353452366|gb|EHC00760.1| 3'-5' exonuclease [Mycobacterium abscessus 47J26]
gi|363994714|gb|EHM15932.1| hypothetical protein MMAS_28540 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|392081436|gb|EIU07262.1| ribonuclease III [Mycobacterium abscessus 5S-0421]
gi|392083651|gb|EIU09476.1| ribonuclease III [Mycobacterium abscessus 5S-0304]
gi|392087325|gb|EIU13147.1| ribonuclease III [Mycobacterium abscessus 5S-0422]
gi|392095586|gb|EIU21381.1| ribonuclease III [Mycobacterium abscessus 5S-0708]
gi|392100892|gb|EIU26683.1| ribonuclease III [Mycobacterium abscessus 5S-0817]
gi|392103987|gb|EIU29773.1| ribonuclease III [Mycobacterium abscessus 5S-1212]
gi|392119786|gb|EIU45554.1| ribonuclease III [Mycobacterium abscessus 5S-1215]
gi|392136850|gb|EIU62587.1| ribonuclease III [Mycobacterium massiliense 1S-151-0930]
gi|392144490|gb|EIU70215.1| ribonuclease III [Mycobacterium massiliense 1S-152-0914]
gi|392149775|gb|EIU75489.1| ribonuclease III [Mycobacterium massiliense 1S-153-0915]
gi|392153652|gb|EIU79358.1| ribonuclease III [Mycobacterium massiliense 1S-154-0310]
gi|392157920|gb|EIU83617.1| ribonuclease III [Mycobacterium massiliense 2B-0626]
gi|392165845|gb|EIU91531.1| ribonuclease III [Mycobacterium abscessus 5S-0921]
gi|392185520|gb|EIV11169.1| ribonuclease III [Mycobacterium massiliense 2B-0307]
gi|392186399|gb|EIV12046.1| ribonuclease III [Mycobacterium massiliense 2B-0912-R]
gi|392194482|gb|EIV20102.1| ribonuclease III [Mycobacterium massiliense 2B-0912-S]
gi|392238591|gb|EIV64084.1| ribonuclease III [Mycobacterium massiliense CCUG 48898]
gi|392249310|gb|EIV74785.1| ribonuclease III [Mycobacterium massiliense 2B-1231]
gi|392253676|gb|EIV79144.1| ribonuclease III [Mycobacterium massiliense 2B-0107]
gi|395458123|gb|AFN63786.1| Ribonuclease D [Mycobacterium massiliense str. GO 06]
Length = 400
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 111/253 (43%), Gaps = 16/253 (6%)
Query: 146 LKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVV-DTLKLRVQVGPYLREVFKDPTK 204
L FAVD E + L+QI R V+ D + +GP + + D
Sbjct: 38 LSGTGAFAVDAERASGFRYSNRAYLIQIRRRGAGTVLLDPTNVPGSLGPIVEALGAD--- 94
Query: 205 KKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQN 264
+ ++H AD+D+ L + + +++DT A R+ E+ +L ++H G+ K +
Sbjct: 95 EWILHAADQDLPCLA-ELDMKPPSLYDTELAGRLAGFEKVNLASMVHRLLGLGLAKGHGA 153
Query: 265 ADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCR 324
ADW RPLPD+ L YA D L+ + D + L+ K +E + + R
Sbjct: 154 ADWSKRPLPDDWLNYAALDVEVLVELRDKIAEVLAEQGK-TEWARQEFEHLAHTPVPATR 212
Query: 325 QLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 384
++ S +H G QLA V L RD +ARA D + G LP+ ++
Sbjct: 213 ----RDNWRRTSGIHKVRKPG------QLAAVRELWLSRDELARARDVAPGRTLPDSAIV 262
Query: 385 EIAKQLPTTAAKL 397
E A P T A+L
Sbjct: 263 EAALADPKTRAEL 275
>gi|189096244|pdb|3CYM|A Chain A, Crystal Structure Of Protein Bad_0989 From Bifidobacterium
Adolescentis
Length = 440
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 43/243 (17%)
Query: 214 DIVWLQRD----------FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 263
D VW+ D G+ +FDT A+R+L L+R L + HF G+ KE+
Sbjct: 93 DAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLGLKRFGLAAVTEHFLGLTLAKEHS 152
Query: 264 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL---SSMPKESENSDTPLTEVYKRSY 320
ADW RPLP + YA D L+ + M+ +L M E D L E
Sbjct: 153 AADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGP-- 210
Query: 321 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 380
KE L ++H+ + + Q LA+V L RD +AR D + +L +
Sbjct: 211 -------RKEHLI--PWMHVSHITEVMRDRQALAIVRALWTRRDELAREYDIAPTLLLSD 261
Query: 381 RTLIEIAKQLPTTAAKLRRL-----------------LKSKHSYIERYMGPVLSIIKNSM 423
++IE+AK+ P AA+ R + + +++ I+R + P S+ KN +
Sbjct: 262 SSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRKIKP--SMWKNII 319
Query: 424 QNA 426
Q+A
Sbjct: 320 QDA 322
>gi|171910647|ref|ZP_02926117.1| ribonuclease D, putative [Verrucomicrobium spinosum DSM 4136]
Length = 381
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 120/274 (43%), Gaps = 26/274 (9%)
Query: 130 FKLVEEVKDLKELAAKLKSV------DEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVD 183
+ ++ + L+ LAA L S+ +D E + F CL+Q++ ++D
Sbjct: 14 YYWIDTEEQLRGLAADLNSLITRGELTRVYLDTEADSLHHFQEKLCLIQLAANGIYALID 73
Query: 184 TLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLER 243
L L +GP L V + H AD D+ L+R ++ DT A+R+
Sbjct: 74 PLVLS-DLGPLLEVV---DNAEVWFHSADYDLTLLKRTCNWTPTHLKDTQVAARLTGHRT 129
Query: 244 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
L L+ CGV K Q DW +RPLP +M YA +D YL + DI L + +
Sbjct: 130 FGLAALVEQHCGVTLCKSSQKEDWSLRPLPAKMQAYAVDDVRYLGRLVDIFMTDLVAKDR 189
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLS--ENSYLHIYGLQGAG-LNAQQLAVVAGLC 360
+++S + R +++LS E + + G+G L LA++ +
Sbjct: 190 ---------VTWFEQSCESLR----RDVLSRQEKDRDEAWRISGSGRLRPAGLAILREVW 236
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 394
WRD IAR D VL N+ ++ +A + T+
Sbjct: 237 NWRDGIAREKDVPPFRVLNNQQMLTMATEFETSG 270
>gi|262202194|ref|YP_003273402.1| 3'-5' exonuclease [Gordonia bronchialis DSM 43247]
gi|262085541|gb|ACY21509.1| 3'-5' exonuclease [Gordonia bronchialis DSM 43247]
Length = 447
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 112/250 (44%), Gaps = 16/250 (6%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+QI R F++D + + P + + + P + V+H
Sbjct: 71 VAVDTERASGYRYSQRAYLIQIRRRGAGTFLLDPIDEPDALAPVI-DALRGP--EWVLHA 127
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L R+ G ++DT A R+L L + +L ++ F G+ K + ADW R
Sbjct: 128 ADQDLPCL-RELGFVCAELYDTELAGRLLGLAKVNLAAMVAEFLGLGLRKGHGAADWSRR 186
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLPD+ L YA D L+ + D M L++ K D E + + +
Sbjct: 187 PLPDDWLNYAALDVEVLVELRDAMDAALAAAGK-----DRWAREEFAYVLNRPPAPPRPD 241
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
S +H +A+ LA V L R+ IA D + G VLP+ ++ A
Sbjct: 242 RWRRTSNIHTIK------SARTLAAVRELWTTRESIAERRDVAPGRVLPDSAIVNAATAN 295
Query: 391 PTTAAKLRRL 400
PT+ A+L RL
Sbjct: 296 PTSIAELTRL 305
>gi|91977418|ref|YP_570077.1| ribonuclease D [Rhodopseudomonas palustris BisB5]
gi|91683874|gb|ABE40176.1| ribonuclease D [Rhodopseudomonas palustris BisB5]
Length = 392
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 120/271 (44%), Gaps = 16/271 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + L ++ +L S VD E + ++ L C++Q+++ E VVDTL + +
Sbjct: 3 LISTTEQLADVCTRLASHPVITVDTEFLRETTYYPLLCVVQMASPDEAVVVDTLAPGIDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--L 249
P+ ++ + KV H A +DI + GI +FDT A+ VL +S+ Y L
Sbjct: 63 KPFF-DLMANENVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVLGYG-DSIAYDQL 120
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ G +K ++ DW RPL DE L YA D +L ++ + L + S+
Sbjct: 121 VERITGHRPDKTHRFTDWSRRPLTDEQLHYAVSDVTHLRDVFAALDADLKKRDRSDWVSE 180
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
++YD + E E L+ ++LAV+ + WR+ A+
Sbjct: 181 EMEILTSPKTYD-----FHPESAWER-------LKTRVRKPKELAVLMEVAAWREQEAQT 228
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
D VL + L +IA PT+ +L L
Sbjct: 229 RDVPRSRVLKDDALGDIATHAPTSLERLATL 259
>gi|119026007|ref|YP_909852.1| hypothetical protein BAD_0989 [Bifidobacterium adolescentis ATCC
15703]
gi|118765591|dbj|BAF39770.1| hypothetical protein BAD_0989 [Bifidobacterium adolescentis ATCC
15703]
Length = 431
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 43/243 (17%)
Query: 214 DIVWLQRD----------FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 263
D VW+ D G+ +FDT A+R+L L+R L + HF G+ KE+
Sbjct: 91 DAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLGLKRFGLAAVTEHFLGLTLAKEHS 150
Query: 264 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL---SSMPKESENSDTPLTEVYKRSY 320
ADW RPLP + YA D L+ + M+ +L M E D L E
Sbjct: 151 AADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGP-- 208
Query: 321 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 380
KE L ++H+ + + Q LA+V L RD +AR D + +L +
Sbjct: 209 -------RKEHLI--PWMHVSHITEVMRDRQALAIVRALWTRRDELAREYDIAPTLLLSD 259
Query: 381 RTLIEIAKQLPTTAAKLRRL-----------------LKSKHSYIERYMGPVLSIIKNSM 423
++IE+AK+ P AA+ R + + +++ I+R + P S+ KN +
Sbjct: 260 SSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRKIKP--SMWKNII 317
Query: 424 QNA 426
Q+A
Sbjct: 318 QDA 320
>gi|379709831|ref|YP_005265036.1| putative RNase D [Nocardia cyriacigeorgica GUH-2]
gi|374847330|emb|CCF64400.1| putative RNase D [Nocardia cyriacigeorgica GUH-2]
Length = 446
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 113/269 (42%), Gaps = 20/269 (7%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQIS-TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+Q+ F++D + + + P L E D + V+H
Sbjct: 66 LAVDAERASGFRYSARAYLIQLRRAGAGTFLIDPIPVADDLTP-LAEAIND--LEWVLHS 122
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L + G+ +FDT R+ +R L ++ G K + ADW R
Sbjct: 123 ADQDLPGLAQ-LGLRPARLFDTELGGRLAGFDRVGLAAMVERLLGRALRKGHGAADWSTR 181
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLP+ L YA D LL + + + I L K TE + ++ R L E
Sbjct: 182 PLPEAWLNYAALDVELLLELRESVAIALHQQGK---------TEWAAQEFEHVR-LTEPA 231
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+ + G+ A+QLA V L RD +AR D + +LP+ +I A
Sbjct: 232 PPKADRWRRTSGIHTL-RRARQLATVRELWTTRDELARQRDIAPSRILPDSAIIAAANAE 290
Query: 391 PTTAAKLRRLL----KSKHSYIERYMGPV 415
P T A+LR L + Y ++G V
Sbjct: 291 PRTIAQLRELPVFGGPRQRRYSREWLGAV 319
>gi|154488712|ref|ZP_02029561.1| hypothetical protein BIFADO_02019 [Bifidobacterium adolescentis
L2-32]
gi|154082849|gb|EDN81894.1| 3'-5' exonuclease [Bifidobacterium adolescentis L2-32]
Length = 431
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 43/243 (17%)
Query: 214 DIVWLQRD----------FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 263
D VW+ D G+ +FDT A+R+L L+R L + HF G+ KE+
Sbjct: 91 DAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLGLKRFGLAAVTEHFLGLTLAKEHS 150
Query: 264 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL---SSMPKESENSDTPLTEVYKRSY 320
ADW RPLP + YA D L+ + M+ +L M E D L E
Sbjct: 151 AADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGP-- 208
Query: 321 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 380
KE L ++H+ + + Q LA+V L RD +AR D + +L +
Sbjct: 209 -------RKEHLI--PWMHVSHITEVMRDRQALAIVRALWTRRDELAREYDIAPTLLLSD 259
Query: 381 RTLIEIAKQLPTTAAKLRRL-----------------LKSKHSYIERYMGPVLSIIKNSM 423
++IE+AK+ P AA+ R + + +++ I+R + P S+ KN +
Sbjct: 260 SSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRKIKP--SMWKNII 317
Query: 424 QNA 426
Q+A
Sbjct: 318 QDA 320
>gi|271967979|ref|YP_003342175.1| ribonuclease D-like protein [Streptosporangium roseum DSM 43021]
gi|270511154|gb|ACZ89432.1| Ribonuclease D-like protein [Streptosporangium roseum DSM 43021]
Length = 408
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 34/202 (16%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A +D+ L + G + +FDT A R+L ER L ++ + G+ K + AD
Sbjct: 93 VLHAASQDLPCLA-ELGFHPRELFDTELAGRLLGYERVGLGMMVENVLGLKLEKGHSAAD 151
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE-----------NSDTPLTEV 315
W RPLP++ LRYA D L+ + D++ +L + K + S P ++
Sbjct: 152 WSTRPLPEDWLRYAALDVEVLVELRDVLHEELKTSGKLAWAQEEFASVLAYKSPAPRSDP 211
Query: 316 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 375
++R+ + + + L+G LAVV L RD AR D + G
Sbjct: 212 WRRTSGIHK---------------VRSLRG-------LAVVRELWTLRDEFARESDIAPG 249
Query: 376 YVLPNRTLIEIAKQLPTTAAKL 397
VLP+ ++ A +LP T L
Sbjct: 250 RVLPDSAIVTAALELPRTTKAL 271
>gi|399073593|ref|ZP_10750582.1| ribonuclease D [Caulobacter sp. AP07]
gi|398041375|gb|EJL34440.1| ribonuclease D [Caulobacter sp. AP07]
Length = 389
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 126/293 (43%), Gaps = 16/293 (5%)
Query: 145 KLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTK 204
+LK AVD E + ++ CL+Q+++ + +D L + + P L ++ +DP
Sbjct: 16 ELKGAPFIAVDTEFMRETTYWPKLCLIQVASPDTEACIDPLAEGLDLAPLL-DILRDPAV 74
Query: 205 KKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQ 263
KV H A +D+ + + +FDT A E+ + + L+ + +K +
Sbjct: 75 LKVFHAARQDVE-IFNNLNAMPTPLFDTQVAGMAAGFGEQIAYDALVRQMLKIELDKSSR 133
Query: 264 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC 323
DW RPL + L YA D +L ++ I++ +L + + + +YDV
Sbjct: 134 FTDWARRPLSEAQLTYAVADVTHLATLFPILRERLEKAGRLAWVEEEMKALNDPAAYDVD 193
Query: 324 RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 383
+ + L + + LAV + WR+ A+ D+ G +L + +
Sbjct: 194 PEKAWRRLRPRKT------------APKYLAVFKAVAAWRERTAQTRDQPRGRILKDEAI 241
Query: 384 IEIAKQLPTTAAKLRRLLKSKHSYIERYMGP-VLSIIKNSMQNAANFEVIAQK 435
E+A Q PT+ L L + GP +L+ IK+++ + + + +K
Sbjct: 242 DELATQAPTSLEGLNTLRSVPKGFGGSKFGPDLLAAIKSALADPEGYAPVLEK 294
>gi|154253761|ref|YP_001414585.1| ribonuclease D [Parvibaculum lavamentivorans DS-1]
gi|154157711|gb|ABS64928.1| ribonuclease D [Parvibaculum lavamentivorans DS-1]
Length = 427
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 119/267 (44%), Gaps = 28/267 (10%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L+ +L + VD E + +F + CL+Q++ +++ +VD L + + P+ +
Sbjct: 53 LRAACDRLSTAGFVTVDTEFMRDATFWPILCLIQLAGPSDELIVDPLAPDLDLAPFY-AL 111
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHFCGVN 257
K+ KV H A +DI + +FDT A+ V + E L+ G +
Sbjct: 112 MKNRNVVKVFHAARQDIEIFCHEGKAIPDPLFDTQVAAMVCGFGDSVGYETLVRKLAGGS 171
Query: 258 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYK 317
+K + DW RPL D+ L+YA D YL IY+++ +L+ K
Sbjct: 172 VDKSSRFTDWSRRPLSDKQLQYAMADVTYLRTIYEVLAKRLTHT---------------K 216
Query: 318 RSYDVCRQLYEKE------LLSENSYLHIYGLQGAGLNAQQ-LAVVAGLCEWRDVIARAD 370
R++ V ++ + + EN++ + A Q+ LAV+ + WR+ A+
Sbjct: 217 RAHWVAEEMAVLQDPETYAMRPENAWKRV----KARFRGQRGLAVLVEVAAWRERQAQER 272
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKL 397
D V+ + L EIA Q+P T + L
Sbjct: 273 DLPRSRVMKDDALAEIATQIPRTISDL 299
>gi|315500006|ref|YP_004088809.1| ribonuclease d [Asticcacaulis excentricus CB 48]
gi|315418018|gb|ADU14658.1| ribonuclease D [Asticcacaulis excentricus CB 48]
Length = 382
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 124/275 (45%), Gaps = 25/275 (9%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L + AK+ S VD E + ++ CL+Q ++ ++D L + + P+L ++
Sbjct: 10 LTDFCAKIASAPFITVDTEFMRETTYWPKLCLIQAASEEHAGIIDPLSPDLDLKPFL-DL 68
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHFCGVN 257
DP KV H +D+ + + G +FDT A+ ++ + + L+ V+
Sbjct: 69 LTDPAILKVFHACRQDVE-IFNNLGAMPAPVFDTQVAAMAAGFGDQVAYDSLVRQVIKVD 127
Query: 258 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDTPLT 313
+K + DW RPL ++ L+YA D +L +Y + KL + + +E +D
Sbjct: 128 IDKGSRFTDWSRRPLSEQQLQYALGDVTHLARLYPKLVEKLKAQNRYEWVAAEMADLTDP 187
Query: 314 EVYKRSYD-VCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
++Y S D R+L ++ + + +AV + WR+ +A+ D+
Sbjct: 188 KLYNTSPDDAWRRLRPRKP-----------------SLKYMAVFKEVAAWRERVAQERDQ 230
Query: 373 STGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 407
G +L + + EIA QLPT AA RL + +
Sbjct: 231 PRGRILKDEGVDEIATQLPTDAAAFDRLRSTPKGF 265
>gi|220933694|ref|YP_002512593.1| ribonuclease D [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219995004|gb|ACL71606.1| ribonuclease D [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 396
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 138/298 (46%), Gaps = 22/298 (7%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ ++ + L ++ A+D E + +++ CL+Q++T +D + L
Sbjct: 14 IRFIDTAEGLAAFCGEIAGAQWIALDTEFVREKTYYPRLCLVQVATPDALACIDPIAL-P 72
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY- 248
+GP L + DP KV+H A +D+ L + G +FDT A +L + + Y
Sbjct: 73 DLGP-LAALLHDPAVTKVVHAAHQDMEILLQSTGRVPTPVFDTQVAVSLLG-HGDQIGYA 130
Query: 249 -LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
++ + + +K + DW RPL LRYA +D +L +Y ++ L E +
Sbjct: 131 RMVQIYLDLELDKGHTRTDWSQRPLETAQLRYAADDVRHLARVYPMILKDL-----EEKG 185
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYG---LQGAGLNAQQLAVVAGLCEWRD 364
L+E + + R L + +N++ I G L+GA QLAV+ L WR+
Sbjct: 186 RLDWLSEDFAAISEESRYLPD----PDNAWRRIKGQKYLKGA-----QLAVLQALAAWRE 236
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
A D ++L + L E++++ PT A L ++ + ++R+ +L++++ +
Sbjct: 237 RQAMEKDLPKRWILSDDVLTELSQRSPTDLASLAKVRGLEDKTLQRHGETLLALVREA 294
>gi|404446630|ref|ZP_11011735.1| ribonuclease D [Mycobacterium vaccae ATCC 25954]
gi|403650123|gb|EJZ05402.1| ribonuclease D [Mycobacterium vaccae ATCC 25954]
Length = 442
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 116/275 (42%), Gaps = 30/275 (10%)
Query: 135 EVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVV--------DTLK 186
E+ D EL A FAVD E + L+QI V+ D L+
Sbjct: 59 EIADAAELLASGHG--PFAVDAERASGFRYSNRAYLVQIRRAGAGTVLIDPVSHGGDPLQ 116
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
+ V L E + V+H AD+D+ L + G++ +++DT A R+ +R +L
Sbjct: 117 VLAPVADVLSEA------EWVLHAADQDLPCLA-EIGMHPPSLYDTELAGRLANYDRVNL 169
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++ G+ K + ADW RPLP E L YA D LL + D + L +E
Sbjct: 170 AAMVQRLLGLQLTKGHGAADWSKRPLPAEWLNYAALDVEVLLELRDAVDAVL----QEQG 225
Query: 307 NSDTPLTEV-YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
+D E Y R+ + ++ S +H + + LA V L + RD
Sbjct: 226 KADWAAQEFEYLRTAEATPT--RRDRWRRTSGIHKV------RDPRTLAAVRELWQTRDQ 277
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
IAR D + G +LP+ +I A P T KL L
Sbjct: 278 IARRRDIAPGRILPDSAIISAATANPDTVEKLTAL 312
>gi|429758726|ref|ZP_19291239.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 181 str. F0379]
gi|429172940|gb|EKY14477.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 181 str. F0379]
Length = 412
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 139/309 (44%), Gaps = 27/309 (8%)
Query: 123 PSLEQTPFKLVEEVKDLK---ELAAKLKSVDEF--AVDLEHNQYRSFLGLTCLMQISTRT 177
P L P + E+ D + E AA+ SV AVD+E Q + L+Q+ R
Sbjct: 17 PELIAFPRDGIPEIIDTQSALEQAAEDLSVSSLPVAVDVERAQGFRYGSSPYLLQL--RR 74
Query: 178 ED---FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
ED F++DT L P+L + ++H A +D+ L R+ G+ + +FDT
Sbjct: 75 EDVGSFLIDTAAL-----PHLECLQASMNSTWILHDASQDLPNL-RELGLEIPALFDTQV 128
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
ASR+L + L + G+ K++Q ++W VRPLP + LRYA D L + D +
Sbjct: 129 ASRLLGMTHFGLSAVCEQVLGLTLVKDHQASNWSVRPLPKDWLRYAVLDVELLTALKDSL 188
Query: 295 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 354
+ +L + + S + + + L +K + + I G+ G + + LA
Sbjct: 189 EERLDDLGRTSWAQ-----QEFSHIAEAAPPLPKK-----DRWRSISGI-GKLTSKRALA 237
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 414
+ L RD IAR D + G ++ N +I A++ P T L + + + RY
Sbjct: 238 IARELWIERDAIAREIDLAPGRLVRNSGIIHAAQRPPRTRHNLLSIAEFRSPQARRYAQH 297
Query: 415 VLSIIKNSM 423
L + ++
Sbjct: 298 FLDAVTRAL 306
>gi|342179231|sp|A7HYE5.2|RND_PARL1 RecName: Full=Ribonuclease D; Short=RNase D
Length = 384
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 119/267 (44%), Gaps = 28/267 (10%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L+ +L + VD E + +F + CL+Q++ +++ +VD L + + P+ +
Sbjct: 10 LRAACDRLSTAGFVTVDTEFMRDATFWPILCLIQLAGPSDELIVDPLAPDLDLAPFY-AL 68
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHFCGVN 257
K+ KV H A +DI + +FDT A+ V + E L+ G +
Sbjct: 69 MKNRNVVKVFHAARQDIEIFCHEGKAIPDPLFDTQVAAMVCGFGDSVGYETLVRKLAGGS 128
Query: 258 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYK 317
+K + DW RPL D+ L+YA D YL IY+++ +L+ K
Sbjct: 129 VDKSSRFTDWSRRPLSDKQLQYAMADVTYLRTIYEVLAKRLTHT---------------K 173
Query: 318 RSYDVCRQLYEKE------LLSENSYLHIYGLQGAGLNAQQ-LAVVAGLCEWRDVIARAD 370
R++ V ++ + + EN++ + A Q+ LAV+ + WR+ A+
Sbjct: 174 RAHWVAEEMAVLQDPETYAMRPENAWKRV----KARFRGQRGLAVLVEVAAWRERQAQER 229
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKL 397
D V+ + L EIA Q+P T + L
Sbjct: 230 DLPRSRVMKDDALAEIATQIPRTISDL 256
>gi|418421090|ref|ZP_12994266.1| hypothetical protein MBOL_28120 [Mycobacterium abscessus subsp.
bolletii BD]
gi|363997557|gb|EHM18768.1| hypothetical protein MBOL_28120 [Mycobacterium abscessus subsp.
bolletii BD]
Length = 400
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 16/247 (6%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVV-DTLKLRVQVGPYLREVFKDPTKKKVMHG 210
FAVD E + L+QI R V+ D + +GP + + D + ++H
Sbjct: 44 FAVDAERASGFRYSNRAYLIQIRRRGAGTVLLDPTNVPGSLGPIVDALGAD---EWILHA 100
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L + + +++DT A R+ E+ +L ++H G+ K + ADW R
Sbjct: 101 ADQDLPCLA-ELAMKPPSLYDTELAGRLAGFEKVNLASMVHRLLGLGLAKGHGAADWSKR 159
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLPD+ L YA D L+ + D + L+ K +E + + R ++
Sbjct: 160 PLPDDWLNYAALDVEVLVELRDKIAEVLAKQGK-TEWARQEFEHLAHTPVPATR----RD 214
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
S +H G QLA V L RD +ARA D + G LP+ ++E A
Sbjct: 215 NWRRTSGIHKVRKPG------QLAAVRELWLSRDELARARDVAPGRTLPDSAIVEAALAD 268
Query: 391 PTTAAKL 397
P T A+L
Sbjct: 269 PKTRAEL 275
>gi|309811737|ref|ZP_07705515.1| 3'-5' exonuclease [Dermacoccus sp. Ellin185]
gi|308434349|gb|EFP58203.1| 3'-5' exonuclease [Dermacoccus sp. Ellin185]
Length = 459
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 12/185 (6%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A +D+ L + G+ +FDT SR+ L R L + HF GV KE+ D
Sbjct: 131 VLHAATQDLPCL-KALGLRPRKLFDTELGSRLAGLPRVGLAAVTEHFVGVTLAKEHSAVD 189
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP + L YA D L+ + D + L E++ + ++ D
Sbjct: 190 WSTRPLPHDWLVYAALDVERLVEVRDALAADL-----EAQGKAEWARQEFEALLDFEGPT 244
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
+KE S LH A + +QLA V L + R+ IA+ D + G VLP+ +I++
Sbjct: 245 PKKEPWRRTSGLH------ALRDLRQLARVRALWQTREDIAQRRDTTPGRVLPDALIIDL 298
Query: 387 AKQLP 391
A++ P
Sbjct: 299 ARRNP 303
>gi|86147639|ref|ZP_01065948.1| ribonuclease D [Vibrio sp. MED222]
gi|85834550|gb|EAQ52699.1| ribonuclease D [Vibrio sp. MED222]
Length = 397
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 123/261 (47%), Gaps = 16/261 (6%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ +VKDL+ + + + D +D E + R++ L+Q+ ++D + L
Sbjct: 28 YQIITQVKDLERVCQQAREADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIALD- 86
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
++ P++ + KD + KV+H D+ Q FG M DT + L ++
Sbjct: 87 EMTPFV-GLLKDTSVLKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFLGHGLSTGFAA 145
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD-IMKIKLSSMPKESEN 307
L+ F GV+ +K DW RPL + L YA D HYL+ +Y+ I++ + + E+
Sbjct: 146 LVSEFVGVDLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKILEKVMEAGWWEAAQ 205
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
++ L +V KR ++ +N+YL I G L QQLA++ L WR A
Sbjct: 206 QESDL-QVAKRI---------RKANPDNAYLDIKG--AWQLKPQQLAILRPLATWRLKEA 253
Query: 368 RADDESTGYVLPNRTLIEIAK 388
D + +V + L +A+
Sbjct: 254 IKRDLALNFVFKEQDLWAVAR 274
>gi|169630071|ref|YP_001703720.1| hypothetical protein MAB_2988 [Mycobacterium abscessus ATCC 19977]
gi|420910597|ref|ZP_15373909.1| ribonuclease III [Mycobacterium abscessus 6G-0125-R]
gi|420917049|ref|ZP_15380353.1| ribonuclease III [Mycobacterium abscessus 6G-0125-S]
gi|420922214|ref|ZP_15385511.1| ribonuclease III [Mycobacterium abscessus 6G-0728-S]
gi|420927876|ref|ZP_15391158.1| ribonuclease III [Mycobacterium abscessus 6G-1108]
gi|420967485|ref|ZP_15430689.1| ribonuclease III [Mycobacterium abscessus 3A-0810-R]
gi|420978216|ref|ZP_15441394.1| ribonuclease III [Mycobacterium abscessus 6G-0212]
gi|420983601|ref|ZP_15446768.1| ribonuclease III [Mycobacterium abscessus 6G-0728-R]
gi|421007806|ref|ZP_15470917.1| ribonuclease III [Mycobacterium abscessus 3A-0119-R]
gi|421013569|ref|ZP_15476650.1| ribonuclease III [Mycobacterium abscessus 3A-0122-R]
gi|421018518|ref|ZP_15481576.1| ribonuclease III [Mycobacterium abscessus 3A-0122-S]
gi|421025191|ref|ZP_15488235.1| ribonuclease III [Mycobacterium abscessus 3A-0731]
gi|421029834|ref|ZP_15492866.1| ribonuclease III [Mycobacterium abscessus 3A-0930-R]
gi|421035103|ref|ZP_15498123.1| ribonuclease III [Mycobacterium abscessus 3A-0930-S]
gi|169242038|emb|CAM63066.1| Conserved hypothetical protein (putative exonuclease)
[Mycobacterium abscessus]
gi|392112591|gb|EIU38360.1| ribonuclease III [Mycobacterium abscessus 6G-0125-R]
gi|392121189|gb|EIU46955.1| ribonuclease III [Mycobacterium abscessus 6G-0125-S]
gi|392132050|gb|EIU57796.1| ribonuclease III [Mycobacterium abscessus 6G-0728-S]
gi|392135109|gb|EIU60850.1| ribonuclease III [Mycobacterium abscessus 6G-1108]
gi|392166490|gb|EIU92175.1| ribonuclease III [Mycobacterium abscessus 6G-0212]
gi|392168597|gb|EIU94275.1| ribonuclease III [Mycobacterium abscessus 6G-0728-R]
gi|392199259|gb|EIV24869.1| ribonuclease III [Mycobacterium abscessus 3A-0119-R]
gi|392201917|gb|EIV27515.1| ribonuclease III [Mycobacterium abscessus 3A-0122-R]
gi|392208393|gb|EIV33967.1| ribonuclease III [Mycobacterium abscessus 3A-0122-S]
gi|392211988|gb|EIV37554.1| ribonuclease III [Mycobacterium abscessus 3A-0731]
gi|392224586|gb|EIV50106.1| ribonuclease III [Mycobacterium abscessus 3A-0930-R]
gi|392225835|gb|EIV51350.1| ribonuclease III [Mycobacterium abscessus 3A-0930-S]
gi|392249992|gb|EIV75466.1| ribonuclease III [Mycobacterium abscessus 3A-0810-R]
Length = 400
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 16/247 (6%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVV-DTLKLRVQVGPYLREVFKDPTKKKVMHG 210
FAVD E + L+QI R V+ D + +GP + + D + ++H
Sbjct: 44 FAVDAERASGFRYSNRAYLIQIRRRGAGTVLLDPTNVPGSLGPIVDALGAD---EWILHA 100
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L + + +++DT A R+ E+ +L ++H G+ K + ADW R
Sbjct: 101 ADQDLPCLA-ELAMKPPSLYDTELAGRLAGFEKVNLASMVHRLLGLGLAKGHGAADWSKR 159
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLPD+ L YA D L+ + D + L+ K +E + + R ++
Sbjct: 160 PLPDDWLNYAALDVEVLVELRDKIAEVLAEQGK-TEWARQEFEHLAHTPVPATR----RD 214
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
S +H G QLA V L RD +ARA D + G LP+ ++E A
Sbjct: 215 NWRRTSGIHKVRKPG------QLAAVRELWLSRDELARARDVAPGRTLPDSAIVEAALAD 268
Query: 391 PTTAAKL 397
P T A+L
Sbjct: 269 PKTRAEL 275
>gi|118467912|ref|YP_887109.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155]
gi|399987123|ref|YP_006567472.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155]
gi|118169199|gb|ABK70095.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155]
gi|399231684|gb|AFP39177.1| Putative ribonuclease D [Mycobacterium smegmatis str. MC2 155]
Length = 415
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H AD+D+ L + G+ ++DT A R+ ER +L ++ G+ K + AD
Sbjct: 107 VLHAADQDLPCLA-EIGLRPGKLYDTELAGRLAGFERVNLAAMVQRLLGLQLMKGHGAAD 165
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLPDE L YA D LL + + L K TE + ++ R
Sbjct: 166 WSKRPLPDEWLNYAALDVEVLLELRHAIAAVLEEQGK---------TEWAAQEFEHLRT- 215
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
Y + + + G+ N + LA V L RD IAR+ D + G +LP+ +I
Sbjct: 216 YVAQPTRRDRWRRTSGIHKV-RNPRALAAVRELWTTRDNIARSRDIAPGRILPDAAIINA 274
Query: 387 AKQLPTTAAKLRRL 400
A P T A+L L
Sbjct: 275 ATVDPKTTAELTAL 288
>gi|424880950|ref|ZP_18304582.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WU95]
gi|392517313|gb|EIW42045.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WU95]
Length = 381
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 122/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E DL +L D +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ E+ D KV H A +DI + + +FDT A+ V + S + L+
Sbjct: 61 APFF-ELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVCGFGDSVSYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V+ +K + DW RPL D+ L YA D +L +Y +K +L + E +
Sbjct: 120 SRIKNVHIDKSSRFTDWSRRPLSDKQLDYALADVTHLRDVYLSLKAEL-----DREGRTS 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
L+E D+ ++ ++++ L+ Q+LA++ + WR+ ARA
Sbjct: 175 WLSE----EMDILESRETYDMHPDDAWQR---LKMRLRKPQELAILKYVAAWREREARAR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P L RL
Sbjct: 228 NVPRSRVLKDDAIYEIAQQQPKDTEALGRL 257
>gi|419709773|ref|ZP_14237241.1| 3'-5' exonuclease [Mycobacterium abscessus M93]
gi|419716748|ref|ZP_14244143.1| 3'-5' exonuclease [Mycobacterium abscessus M94]
gi|420864384|ref|ZP_15327774.1| ribonuclease III [Mycobacterium abscessus 4S-0303]
gi|420869175|ref|ZP_15332557.1| ribonuclease III [Mycobacterium abscessus 4S-0726-RA]
gi|420873619|ref|ZP_15336996.1| ribonuclease III [Mycobacterium abscessus 4S-0726-RB]
gi|420989830|ref|ZP_15452986.1| ribonuclease III [Mycobacterium abscessus 4S-0206]
gi|421040139|ref|ZP_15503148.1| ribonuclease III [Mycobacterium abscessus 4S-0116-R]
gi|421043974|ref|ZP_15506975.1| ribonuclease III [Mycobacterium abscessus 4S-0116-S]
gi|382940309|gb|EIC64633.1| 3'-5' exonuclease [Mycobacterium abscessus M94]
gi|382943654|gb|EIC67968.1| 3'-5' exonuclease [Mycobacterium abscessus M93]
gi|392068645|gb|EIT94492.1| ribonuclease III [Mycobacterium abscessus 4S-0726-RA]
gi|392071359|gb|EIT97205.1| ribonuclease III [Mycobacterium abscessus 4S-0303]
gi|392072647|gb|EIT98488.1| ribonuclease III [Mycobacterium abscessus 4S-0726-RB]
gi|392184109|gb|EIV09760.1| ribonuclease III [Mycobacterium abscessus 4S-0206]
gi|392225231|gb|EIV50750.1| ribonuclease III [Mycobacterium abscessus 4S-0116-R]
gi|392237826|gb|EIV63320.1| ribonuclease III [Mycobacterium abscessus 4S-0116-S]
Length = 400
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 16/247 (6%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVV-DTLKLRVQVGPYLREVFKDPTKKKVMHG 210
FAVD E + L+QI R V+ D + +GP + + D + ++H
Sbjct: 44 FAVDAERASGFRYSNRAYLIQIRRRGAGTVLLDPTNVPGSLGPIVDALGAD---EWILHA 100
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L + + +++DT A R+ E+ +L ++H G+ K + ADW R
Sbjct: 101 ADQDLPCLA-ELAMKPPSLYDTELAGRLAGFEKVNLASMVHRLLGLGLAKGHGAADWSKR 159
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLPD+ L YA D L+ + D K++ + E ++ E ++ ++
Sbjct: 160 PLPDDWLNYAALDVEVLVELRD----KIAEVLAEQGKTEWARQEFEHLAHTPV-PATRRD 214
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
S +H G QLA V L RD +ARA D + G LP+ ++E A
Sbjct: 215 NWRRTSGIHKVRKPG------QLAAVRELWLSRDELARARDVAPGRTLPDSAIVEAALAD 268
Query: 391 PTTAAKL 397
P T A+L
Sbjct: 269 PKTRAEL 275
>gi|424874663|ref|ZP_18298325.1| ribonuclease D [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393170364|gb|EJC70411.1| ribonuclease D [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 381
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 122/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E DL +L D +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ E+ D KV H A +DI + + +FDT A+ V + S + L+
Sbjct: 61 APFF-ELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVCGFGDSVSYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V+ +K + DW RPL D+ L YA D +L +Y +K +L + E +
Sbjct: 120 SRIKNVHIDKSSRFTDWSRRPLSDKQLDYALADVTHLRDVYLSLKAEL-----DREGRTS 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
L+E D+ ++ ++++ L+ Q+LA++ + WR+ ARA
Sbjct: 175 WLSE----EMDILESRETYDMHPDDAWQR---LKMRLRKPQELAILKYVAAWREREARAR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P L RL
Sbjct: 228 NVPRSRVLKDDAIYEIAQQQPKDTEALGRL 257
>gi|407715500|ref|YP_006836780.1| ribonuclease D [Cycloclasticus sp. P1]
gi|407255836|gb|AFT66277.1| Ribonuclease D [Cycloclasticus sp. P1]
Length = 383
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 123/261 (47%), Gaps = 27/261 (10%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L E +K+ A+D E + +++ + L+QI+T ++D + + P L ++
Sbjct: 13 LSEFCNTIKNEPWLAIDTEFQREKTYRSILALIQIATADIVAIIDPIA--CDIKPLL-DI 69
Query: 199 FKDPTKKKVMHGA--DRDIVWLQRDFGIYLCNMFDTGQASRVL-KLERNSLEYLLHHFCG 255
+ KV H A D++I + R G L +FDT A+ +L E+ L+ G
Sbjct: 70 LYNQNILKVFHAARQDQEIFYDLR--GKPLAPVFDTQIAAPILGHPEQAGYARLVDDILG 127
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 315
V +K + DW RPL +E + YA +D YL +Y +++ +L K+ N P
Sbjct: 128 VQLSKAHSRTDWLRRPLSEEQITYAADDVIYLAKLYPLLENQLKE--KDRLNWLAPAFA- 184
Query: 316 YKRSYDVCR-QLYEKELLSENSYLHIYG---LQGAGLNAQQLAVVAGLCEWRDVIARADD 371
D+C+ LY E ++ I L+G L+A Q L EWR+ +A+ D
Sbjct: 185 -----DLCKPSLYSNP--PELAWKRIRAAKRLKGGALSALQ-----KLAEWREDLAQQKD 232
Query: 372 ESTGYVLPNRTLIEIAKQLPT 392
G+++ + LIE+AK PT
Sbjct: 233 IPRGWIIKDDILIEVAKLKPT 253
>gi|395781686|ref|ZP_10462104.1| ribonuclease D [Bartonella rattimassiliensis 15908]
gi|395421119|gb|EJF87377.1| ribonuclease D [Bartonella rattimassiliensis 15908]
Length = 383
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 125/276 (45%), Gaps = 17/276 (6%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + DLK L++ D VD E + +F CL+Q+++ ++D + + +
Sbjct: 3 LITQTTDLKIALNALRTSDFVTVDTEFIRETTFWPQLCLIQLASPDVTVLIDPIASDIDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--L 249
P+ ++ D KV H A +DI + GI +FDT A NS+ Y +
Sbjct: 63 QPFF-DLMIDKKVVKVFHAARQDIEMIYHLGGIIPFPLFDTQIAGSFCGFG-NSISYDQI 120
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ H G + +K + DW RPL + L YA D YL +Y ++K KL + D
Sbjct: 121 VQHCTGHHLDKSSRFTDWSCRPLSKKQLLYALADVTYLRDVYLLLKKKLEKNQRTHWMDD 180
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
+ ++YD+ EN ++G ++LAV+ + WR+ AR
Sbjct: 181 EITILLNPKTYDI----------PENEAW--KKVKGKVKKPRELAVLQKITAWREREARK 228
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 405
+ +++ + LIEIA Q P + L+R L+S H
Sbjct: 229 HNMPRRHIMKDECLIEIATQQPKDESALKR-LRSLH 263
>gi|148653524|ref|YP_001280617.1| 3'-5' exonuclease [Psychrobacter sp. PRwf-1]
gi|148572608|gb|ABQ94667.1| 3'-5' exonuclease [Psychrobacter sp. PRwf-1]
Length = 431
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 135/311 (43%), Gaps = 46/311 (14%)
Query: 129 PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLR 188
P V + L+ L++ D A+D E + ++ + L+QI+T +++D KL
Sbjct: 46 PVHWVADFDALEACLDDLETCDRVALDTEFIKRNTYFPILALVQINTGKAIYLIDAPKL- 104
Query: 189 VQVGPYLREVFKDPTKKKVMHGADRDIVW--LQRDFGIY--------LCNMFDTGQASRV 238
D T+ V+ ++W D GI+ L N+FDT A
Sbjct: 105 ------------DLTEFWVVLEEMPLMIWHACGEDLGIFYLLSESPALTNVFDTQIALSY 152
Query: 239 LKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 297
L + + + L V+ K +DW RPL E YA +D YLL +YDI++ +
Sbjct: 153 LTGQLQMGYQQALSQELDVHVEKAESQSDWLARPLSHEQENYAIDDVRYLLNLYDILQQQ 212
Query: 298 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS------ENSYLHIYGLQGAGLNAQ 351
LS LT+ + + C QLY KEL + +YL + +
Sbjct: 213 LSKQ---------GLTD---KVVEDC-QLYAKELYESANIEDDATYL---AMADFRYTPE 256
Query: 352 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 411
QLAV+ + WR+ +ARA ++ +VL + + ++ ++PT+ +L + S + Y
Sbjct: 257 QLAVLQAVSSWREALARATNQPKTFVLKKQAVRDLVVEMPTSIKQLTQKTTMHRSIVRLY 316
Query: 412 MGPVLSIIKNS 422
++ +I +
Sbjct: 317 GDELIQVINQA 327
>gi|58039094|ref|YP_191058.1| ribonuclease D [Gluconobacter oxydans 621H]
gi|58001508|gb|AAW60402.1| Ribonuclease D [Gluconobacter oxydans 621H]
Length = 396
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 130/289 (44%), Gaps = 19/289 (6%)
Query: 128 TPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKL 187
TP L+ +++ + KL++ +D E + R++ CL+Q++ + ++DTL
Sbjct: 10 TPV-LLTSSEEVARICEKLQNEPFVTIDTEFVRERTYWPELCLVQLAGTEDVVLIDTLAP 68
Query: 188 RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSL 246
+ + P L + P KV H A +D+ F ++FDT A+ V ++
Sbjct: 69 GIDLAP-LGALLAKPDCTKVFHAARQDLEIFLHIFDRLPASVFDTQVAAMVAGFGDQVGY 127
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK--E 304
+ L+ G + +K ++ +DW RPL + YA D +L +YD ++ +L+ +
Sbjct: 128 DSLVGAITGRSIDKAHRFSDWSARPLSKAQIAYAATDVTHLRTVYDALRKQLAEQDRLHW 187
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
+++ LTE D R+L+EK L+ N + L ++ + WR+
Sbjct: 188 ADSEQAILTEEKTFRPD-PRRLWEK-------------LKARTSNRRMLGILREVTAWRE 233
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 413
A+ D V+ + +L+EIA P T L R+ + E MG
Sbjct: 234 QEAQNADIPRQRVIRDESLLEIAAVHPDTVEALSRIRGVTRGFAEGKMG 282
>gi|319404161|emb|CBI77754.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498]
Length = 383
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 121/279 (43%), Gaps = 14/279 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+L+ DL+ A L+ + VD E + +F CL+Q+++ ++D + +
Sbjct: 1 MELITNTIDLEISIAALRKSNFVTVDTEFIRKTTFWPQLCLIQVASPDITILIDPMAQDI 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEY 248
+ P+ ++ D KV H A +DI + GI +FDT A + + S +
Sbjct: 61 NLQPFF-DLMIDKKVVKVFHAARQDIEIIYHLGGIIPSPLFDTQVAGSICGFGDSISYDQ 119
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
++ G + +K + DW RPL ++ L YA D YL +Y +K +L +
Sbjct: 120 IVQRCTGHHLDKSSRFTDWSCRPLSEKQLLYAVSDVTYLRDVYLALKKQLEEKKRTHWMH 179
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
D + +YD+ K+ ++G ++LAV+ + WR+ AR
Sbjct: 180 DEMALLLTPTTYDIPENEAWKK------------VKGRITKKRELAVLQKIAAWREREAR 227
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 407
+ +++ + LIEIA Q P A L RL S+
Sbjct: 228 QYNVPRRHIMKDECLIEIAIQQPKDEAALYRLRSINKSW 266
>gi|304321318|ref|YP_003854961.1| ribonuclease D [Parvularcula bermudensis HTCC2503]
gi|303300220|gb|ADM09819.1| ribonuclease D [Parvularcula bermudensis HTCC2503]
Length = 383
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 118/278 (42%), Gaps = 26/278 (9%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+V + +DL L +L D VD E + R++ CL+Q+++ E ++D L +
Sbjct: 1 MHIVTQTQDLTALCGRLAKHDFVTVDTEFMRERTYYPKLCLIQVASTEEAAIIDPLAAAL 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEY 248
+ P+L E+ DP+ KV H A +D+ + G +FDT A+ ++ E
Sbjct: 61 DLAPFL-ELLADPSVLKVFHAARQDLEIFYKLMGKVPAPLFDTQIAAMACGHGDQVGYEA 119
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM------KIKLSSMP 302
L+ G +K + DW RPL D+ L YA D +L+ Y + K +L +
Sbjct: 120 LIREVTGAQVDKGSRFTDWAKRPLSDKQLTYALGDVTHLVDAYQALITELEEKGRLEWIH 179
Query: 303 KESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEW 362
E + P T Y + R++ + L + A++ + W
Sbjct: 180 AEMTQLNDP-TLYYTDPDEAWRRIKVRNLKQRDR-----------------ALLKAVAAW 221
Query: 363 RDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
R+ A A D V+ + L+EI + P A +L L
Sbjct: 222 REREAIARDTPRNRVMKDDGLMEIVRTKPKDAQELAAL 259
>gi|86740037|ref|YP_480437.1| 3'-5' exonuclease [Frankia sp. CcI3]
gi|86566899|gb|ABD10708.1| 3'-5' exonuclease [Frankia sp. CcI3]
Length = 427
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 12/194 (6%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A +D+ L + G+ +FDT A R+L ER L ++ G K + AD
Sbjct: 98 VLHAASQDLPCLS-ELGLRPSLLFDTELAGRLLGYERVGLGIMVERVLGYGLEKGHSAAD 156
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP+ LRYA D L+ + D ++ +L K E ++ +
Sbjct: 157 WSTRPLPEPWLRYAALDVELLVELRDALEAELIEQNK---------IEFARQEFAAIVAA 207
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
+E +E + G+ A + +QLA V + RD +AR D + G VLP+ +++
Sbjct: 208 PPREPRAE-PWRRTSGIHRAR-SRRQLAAVRAMWTARDRLARTRDVAPGRVLPDSAIMDA 265
Query: 387 AKQLPTTAAKLRRL 400
PT AA L RL
Sbjct: 266 VLNAPTDAAALVRL 279
>gi|392420519|ref|YP_006457123.1| ribonuclease D [Pseudomonas stutzeri CCUG 29243]
gi|390982707|gb|AFM32700.1| ribonuclease D [Pseudomonas stutzeri CCUG 29243]
Length = 374
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 119/264 (45%), Gaps = 17/264 (6%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L L A+ + + AVD E + +F + L+Q+ +++D L +R +
Sbjct: 14 LTRLCAEWRQLPYVAVDTEFMRVDTFYPIAGLIQVGDGRRAYLIDPLSVRDWSA--FAAL 71
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGV 256
+DP KV+H D+ L R G +FDT A+ L + S+ Y L+ G+
Sbjct: 72 LQDPAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIG-FSMGYSRLVQAVLGI 130
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
K +DW RPL D +RYA ED +L +Y+ + +PK SE+ V
Sbjct: 131 ELPKGETRSDWLQRPLSDMQVRYAAEDAQHLAELYEAL------LPKLSEDKR---AWVL 181
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
+ ++ L ++E + +Y + Q L QQLAV+ L WR+ ARA ++
Sbjct: 182 EDGAELVANL-QRESDPDEAYRDVK--QAWRLKPQQLAVLKVLAAWRERQARARNQPRNR 238
Query: 377 VLPNRTLIEIAKQLPTTAAKLRRL 400
VL +L +A+ P L R+
Sbjct: 239 VLREASLWPLARTQPRDLVTLARI 262
>gi|441207706|ref|ZP_20973646.1| ribonuclease III [Mycobacterium smegmatis MKD8]
gi|440627889|gb|ELQ89694.1| ribonuclease III [Mycobacterium smegmatis MKD8]
Length = 405
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H AD+D+ L + G+ ++DT A R+ ER +L ++ G+ K + AD
Sbjct: 97 VLHAADQDLPCLA-EIGLRPGKLYDTELAGRLAGFERVNLAAMVQRLLGLQLMKGHGAAD 155
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLPDE L YA D LL + + L K TE + ++ R
Sbjct: 156 WSKRPLPDEWLNYAALDVEVLLELRHAIAAVLEEQGK---------TEWAAQEFEHLRT- 205
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
Y + + + G+ N + LA V L RD IAR+ D + G +LP+ +I
Sbjct: 206 YVAQPTRRDRWRRTSGIHKVR-NPRALAAVRELWTTRDNIARSRDIAPGRILPDAAIINA 264
Query: 387 AKQLPTTAAKLRRL 400
A P T A+L L
Sbjct: 265 ATVDPKTTAELTAL 278
>gi|418594535|ref|ZP_13158323.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P2]
gi|375043331|gb|EHS35959.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P2]
Length = 393
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 125/277 (45%), Gaps = 23/277 (8%)
Query: 123 PSLEQTPFKLVEEVKDLKELAAKLKSVDEF------AVDLEHNQYRSFLGLTCLMQISTR 176
P L + F E++ +++ A+ + E+ A+D E + +F L+Q+
Sbjct: 12 PHLTKEMFVTAPEIQWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDG 71
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
+++++D L +Q E+ +D KV+H D+ R G +FDT A+
Sbjct: 72 RQEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAA 129
Query: 237 RVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L +Y +
Sbjct: 130 AYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLAL 188
Query: 295 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 354
+LS E L + + ++CR+ +E E G L QQLA
Sbjct: 189 DTRLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRLRPQQLA 236
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
V+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 237 VLRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 273
>gi|15596491|ref|NP_249985.1| ribonuclease D [Pseudomonas aeruginosa PAO1]
gi|9947230|gb|AAG04683.1|AE004559_2 ribonuclease D [Pseudomonas aeruginosa PAO1]
Length = 374
Score = 75.9 bits (185), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 17/242 (7%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
A+D E + +F L+Q+ +++++D L +Q E+ +D KV+H
Sbjct: 28 LALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHAC 85
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRV 269
D+ R G +FDT A+ L + +S+ Y L+ ++ K+ +DW
Sbjct: 86 SEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQ 144
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
RPL + +RYA +D +L +Y + +LS E L + + ++CR+ +
Sbjct: 145 RPLTEMQMRYAADDVQHLAQVYLALDTRLSE-----EKRAWLLEDGAELVANLCRESDPR 199
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
E E G L QQLAV+ LC WR+ AR + +VL RTL +A+
Sbjct: 200 EAYREVKL-------GWRLRPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARL 252
Query: 390 LP 391
LP
Sbjct: 253 LP 254
>gi|110633474|ref|YP_673682.1| ribonuclease D [Chelativorans sp. BNC1]
gi|110284458|gb|ABG62517.1| ribonuclease D [Chelativorans sp. BNC1]
Length = 392
Score = 75.9 bits (185), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 125/273 (45%), Gaps = 20/273 (7%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L++ +L+ A L++ D VD E + +F CL+Q++ +VD L + +
Sbjct: 3 LIKSRSELENAVAALENSDFVTVDTEFIRETTFWPELCLIQMAAPGVTALVDPLADGMDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--L 249
P+ R + + KV H A +DI + G+ +FDT A+ V +S+ Y L
Sbjct: 63 APFFR-LMGNEQVVKVFHAARQDIEIIYNRGGLIPHPIFDTQVAAMVCGFG-DSISYDQL 120
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ G + +K + DWR RPL ++ LRYA D +L+ +Y + +L +E
Sbjct: 121 VLRITGEHIDKTSRFTDWRHRPLSEKQLRYALADVTHLIPVYAHLTTELQRGGREG---- 176
Query: 310 TPLTEVYKRSYDV--CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
K DV R+ Y+ ++++ L+ +LA++ + WR+ A
Sbjct: 177 -----WLKEEMDVLTARETYDPH--PDDAWKR---LKMRARKPVELAILQRIAAWREREA 226
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
R + G ++ + L E+A+Q P A L RL
Sbjct: 227 RERNVPRGRIMKDDALYEVAQQQPRDIAALSRL 259
>gi|397565072|gb|EJK44464.1| hypothetical protein THAOC_36991 [Thalassiosira oceanica]
Length = 735
Score = 75.9 bits (185), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 44/217 (20%)
Query: 121 KPPSLEQTPFKLVEEVKDLKELAAKLK------------SVDEFAVDLEHNQY------- 161
K P +QTP+ LV+ ++ LK +LK + E A DLE +
Sbjct: 247 KVPGPDQTPWMLVDSIEKLKVCVHELKFGLGGDHEGRRPIISELAFDLEMHSVGDGRTTS 306
Query: 162 RSFLGLTCLMQISTRT------------EDFVVDTLKLRVQ--VGPYLREVFKDPTKKKV 207
+S + TCL+Q+++ +DFV+D L V + L +F DP+ K+
Sbjct: 307 QSAI-RTCLIQLTSSVFDEEGGTTRDLGKDFVIDPLAPGVWDAIPSILGPIFADPSVVKI 365
Query: 208 MHG-ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS---LEYLLHHFCGVNANK--- 260
H D L +DFGI + N FDT ++ RVL R+ L L + + K
Sbjct: 366 GHAIGGMDTKSLHQDFGILVVNAFDTYESCRVLMGARDGGLGLAKLCRRYGLPDWEKYQA 425
Query: 261 ---EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
YQ +DWR+RPL D L Y R D YL + ++
Sbjct: 426 LKNRYQKSDWRMRPLDDGALTYGRYDVRYLCALRRLL 462
>gi|110834629|ref|YP_693488.1| ribonuclease D [Alcanivorax borkumensis SK2]
gi|110647740|emb|CAL17216.1| ribonuclease D [Alcanivorax borkumensis SK2]
Length = 357
Score = 75.9 bits (185), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 123/265 (46%), Gaps = 27/265 (10%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ E+ K++ E A L + +D E + R+F L+Q+ ++DT ++
Sbjct: 3 YLWCEDNKEISEWQASLAAGSRLYLDTEFMRERTFWPQLALVQVHDGVRIRLIDTTEVD- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY- 248
GP L VF++ T VMH D+ + G Y + DT Q + L E Y
Sbjct: 62 --GPTLLPVFQNHTL--VMHACSEDLEAIATFTGQYPAAIEDT-QIAAALSGEDMQWGYQ 116
Query: 249 -LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
++ GV+ K +W RPL DE L YA +D YL + I+ +L + + +
Sbjct: 117 KVVQMLLGVDLPKGATRTNWLKRPLSDEQLHYAEDDVKYLPEVAGILAERLDGLGRRAWW 176
Query: 308 SDTPLTEVYKRSYDVCRQLYEK---ELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWR 363
+ C +L ++ ++L ++++ ++ +GAG L + LAV+A L WR
Sbjct: 177 EEE------------CARLLKQARSQVLPQDAWRNV---KGAGLLQGESLAVLAALAPWR 221
Query: 364 DVIARADDESTGYVLPNRTLIEIAK 388
D +AR D +VL + L+++A+
Sbjct: 222 DQMARERDLPKSFVLKDAQLLDLAR 246
>gi|107100745|ref|ZP_01364663.1| hypothetical protein PaerPA_01001773 [Pseudomonas aeruginosa PACS2]
gi|421515925|ref|ZP_15962611.1| ribonuclease D [Pseudomonas aeruginosa PAO579]
gi|404349653|gb|EJZ75990.1| ribonuclease D [Pseudomonas aeruginosa PAO579]
Length = 380
Score = 75.9 bits (185), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 17/242 (7%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
A+D E + +F L+Q+ +++++D L +Q E+ +D KV+H
Sbjct: 34 LALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHAC 91
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRV 269
D+ R G +FDT A+ L + +S+ Y L+ ++ K+ +DW
Sbjct: 92 SEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQ 150
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
RPL + +RYA +D +L +Y + +LS E L + + ++CR+ +
Sbjct: 151 RPLTEMQMRYAADDVQHLAQVYLALDTRLSE-----EKRAWLLEDGAELVANLCRESDPR 205
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
E E G L QQLAV+ LC WR+ AR + +VL RTL +A+
Sbjct: 206 EAYREVKL-------GWRLRPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARL 258
Query: 390 LP 391
LP
Sbjct: 259 LP 260
>gi|392377579|ref|YP_004984738.1| ribonuclease D [Azospirillum brasilense Sp245]
gi|356879060|emb|CCC99956.1| ribonuclease D [Azospirillum brasilense Sp245]
Length = 388
Score = 75.9 bits (185), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 118/298 (39%), Gaps = 19/298 (6%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
L+ +DL L VD VD E + +++ CL+Q+ +D L +
Sbjct: 1 MTLITTTEDLDAFCRSLAGVDYITVDTEFLREKTYWPQLCLVQVGAPNGAVAIDPLAEGI 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEY 248
+ P R V DP KV H A +D+ G +FDT A+ V E E
Sbjct: 61 DLAPLFR-VMVDPAILKVFHAARQDVEIFWHLSGQIPHPLFDTQVAAMVCGFGESVGYET 119
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL--SSMPKESE 306
L+ G +K + DW RPL + L YA D +L Y+ +K +L S E
Sbjct: 120 LVTKLAGARIDKSSRFTDWSQRPLTERQLTYALSDVIHLRPAYEKLKRRLVRSGRAHWLE 179
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
LT+ D ++S+L L+ + +AV+ L WR+
Sbjct: 180 EEMAVLTDPATYQVD-----------PDSSWLR---LKVRTNKPRFMAVLKELAAWRERE 225
Query: 367 ARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP-VLSIIKNSM 423
A+ D VL + L+EIA PT+ L R + E G VL+ ++ +
Sbjct: 226 AQRRDLPRSRVLRDEALLEIAAHAPTSVDDLARTRGMGRGFAEGRQGAEVLACVQKGL 283
>gi|453046792|gb|EME94507.1| ribonuclease D [Pseudomonas aeruginosa PA21_ST175]
Length = 393
Score = 75.9 bits (185), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 125/277 (45%), Gaps = 23/277 (8%)
Query: 123 PSLEQTPFKLVEEVKDLKELAAKLKSVDEF------AVDLEHNQYRSFLGLTCLMQISTR 176
P L + F E++ +++ A+ + E+ A+D E + +F L+Q+
Sbjct: 12 PHLTKEMFVTAPEIQWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDG 71
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 236
+++++D L +Q E+ +D KV+H D+ R G +FDT A+
Sbjct: 72 RQEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAA 129
Query: 237 RVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L +Y +
Sbjct: 130 AYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLAL 188
Query: 295 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 354
+LS E L + + ++CR+ +E E G L QQLA
Sbjct: 189 DARLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRLRPQQLA 236
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
V+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 237 VLRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 273
>gi|403737804|ref|ZP_10950532.1| ribonuclease D [Austwickia chelonae NBRC 105200]
gi|403191916|dbj|GAB77302.1| ribonuclease D [Austwickia chelonae NBRC 105200]
Length = 479
Score = 75.9 bits (185), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 124/283 (43%), Gaps = 26/283 (9%)
Query: 123 PSLEQTPFKLVEEVKD----LKELAAKLK-SVDEFAVDLEHNQYRSFLGLTCLMQISTR- 176
P L P + + EV D L E+AA L+ AVD E + L+Q+
Sbjct: 87 PRLIDFPAEGIPEVVDDEQGLAEVAAALRRGAGPIAVDAERASGYRYGQRAYLVQLRREG 146
Query: 177 TEDFVVDTLKL--RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 234
F++D + + P L + + V+H A +D+ L + G++ +FDT
Sbjct: 147 AGSFLIDPVACPDLTPLNPTLADA------EWVLHAATQDLPCLA-ELGLHPTRLFDTEL 199
Query: 235 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 294
+R+ R L +L H+ GV KE+ DW RPLP+ LRYA D L+ + D +
Sbjct: 200 GARLAGQPRVGLAAVLEHYLGVTLAKEHSAVDWSTRPLPEPWLRYAVLDVEVLVTLRDAV 259
Query: 295 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 354
+ L K +E ++ + + + + + GL + + +A
Sbjct: 260 EKDLHDQGK---------SEWARQEFHALTS-FAGPARRVDPWRRLSGLHKIR-DRRTMA 308
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
V L RD +AR+ D S V+P+ L++IA LP + +++
Sbjct: 309 VARELWFARDDVARSRDISPSRVIPDAALLDIAHALPQSLSEV 351
>gi|218892602|ref|YP_002441471.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
gi|254239667|ref|ZP_04932989.1| ribonuclease D [Pseudomonas aeruginosa 2192]
gi|386059670|ref|YP_005976192.1| ribonuclease D [Pseudomonas aeruginosa M18]
gi|421181719|ref|ZP_15639210.1| ribonuclease D [Pseudomonas aeruginosa E2]
gi|126193045|gb|EAZ57108.1| ribonuclease D [Pseudomonas aeruginosa 2192]
gi|218772830|emb|CAW28624.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
gi|347305976|gb|AEO76090.1| ribonuclease D [Pseudomonas aeruginosa M18]
gi|404543287|gb|EKA52574.1| ribonuclease D [Pseudomonas aeruginosa E2]
Length = 374
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 17/242 (7%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
A+D E + +F L+Q+ +++++D L +Q E+ +D KV+H
Sbjct: 28 LALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHAC 85
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRV 269
D+ R G +FDT A+ L + +S+ Y L+ ++ K+ +DW
Sbjct: 86 SEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQ 144
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
RPL + +RYA +D +L +Y + +LS E L + + ++CR+ +
Sbjct: 145 RPLTEMQMRYAADDVQHLAQVYLALDARLSE-----EKRAWLLEDGAELVANLCRESDPR 199
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
E E G L QQLAV+ LC WR+ AR + +VL RTL +A+
Sbjct: 200 EAYREVKL-------GWRLRPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARL 252
Query: 390 LP 391
LP
Sbjct: 253 LP 254
>gi|418583147|ref|ZP_13147217.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P1]
gi|375047367|gb|EHS39913.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P1]
Length = 376
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 17/242 (7%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
A+D E + +F L+Q+ +++++D L +Q E+ +D KV+H
Sbjct: 30 LALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHAC 87
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRV 269
D+ R G +FDT A+ L + +S+ Y L+ ++ K+ +DW
Sbjct: 88 SEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQ 146
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
RPL + +RYA +D +L +Y + +LS E L + + ++CR+ +
Sbjct: 147 RPLTEMQMRYAADDVQHLAQVYLALDTRLSE-----EKRAWLLEDGAELVANLCRESDPR 201
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
E E G L QQLAV+ LC WR+ AR + +VL RTL +A+
Sbjct: 202 EAYREVKL-------GWRLRPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARL 254
Query: 390 LP 391
LP
Sbjct: 255 LP 256
>gi|116049246|ref|YP_791951.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
gi|296390324|ref|ZP_06879799.1| ribonuclease D [Pseudomonas aeruginosa PAb1]
gi|416873541|ref|ZP_11917580.1| ribonuclease D [Pseudomonas aeruginosa 152504]
gi|421175630|ref|ZP_15633306.1| ribonuclease D [Pseudomonas aeruginosa CI27]
gi|115584467|gb|ABJ10482.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
gi|334844716|gb|EGM23287.1| ribonuclease D [Pseudomonas aeruginosa 152504]
gi|404532027|gb|EKA41953.1| ribonuclease D [Pseudomonas aeruginosa CI27]
Length = 374
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 17/242 (7%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
A+D E + +F L+Q+ +++++D L +Q E+ +D KV+H
Sbjct: 28 LALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHAC 85
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRV 269
D+ R G +FDT A+ L + +S+ Y L+ ++ K+ +DW
Sbjct: 86 SEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQ 144
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
RPL + +RYA +D +L +Y + +LS E L + + ++CR+ +
Sbjct: 145 RPLTEMQMRYAADDVQHLAQVYLALDARLSE-----EKRAWLLEDGAELVANLCRESDPR 199
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
E E G L QQLAV+ LC WR+ AR + +VL RTL +A+
Sbjct: 200 EAYREVKL-------GWRLRPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARL 252
Query: 390 LP 391
LP
Sbjct: 253 LP 254
>gi|13195121|gb|AAK13017.1| RNase D [Agrobacterium tumefaciens]
Length = 388
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 121/270 (44%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E L E +L + D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTAALAEACTELAKSEFITTDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P E+ +P KV H A +DI + G+ +FDT A+ V + S + L+
Sbjct: 61 TPMF-ELMANPNVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVCGFGDSISYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V +K + DW RPL ++ L YA D +L +Y +K +L E E
Sbjct: 120 QKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLSLKAQL-----EREGRSL 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
LTE ++ ++ ++++L L+ +LA++ + WR+ AR+
Sbjct: 175 WLTE----EMNILESRDTYDMHPDDAWLR---LKSRLRKPTELAILKFVAAWREREARSR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P A L RL
Sbjct: 228 NVPRSRVLKDDGIFEIAQQQPKDAEALSRL 257
>gi|416856557|ref|ZP_11912131.1| ribonuclease D [Pseudomonas aeruginosa 138244]
gi|420140701|ref|ZP_14648441.1| ribonuclease D [Pseudomonas aeruginosa CIG1]
gi|421161990|ref|ZP_15620882.1| ribonuclease D [Pseudomonas aeruginosa ATCC 25324]
gi|424940506|ref|ZP_18356269.1| ribonuclease D [Pseudomonas aeruginosa NCMG1179]
gi|451988440|ref|ZP_21936569.1| Ribonuclease D [Pseudomonas aeruginosa 18A]
gi|334841819|gb|EGM20440.1| ribonuclease D [Pseudomonas aeruginosa 138244]
gi|346056952|dbj|GAA16835.1| ribonuclease D [Pseudomonas aeruginosa NCMG1179]
gi|403246543|gb|EJY60259.1| ribonuclease D [Pseudomonas aeruginosa CIG1]
gi|404537329|gb|EKA46933.1| ribonuclease D [Pseudomonas aeruginosa ATCC 25324]
gi|451753938|emb|CCQ89092.1| Ribonuclease D [Pseudomonas aeruginosa 18A]
Length = 374
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 17/242 (7%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
A+D E + +F L+Q+ +++++D L +Q E+ +D KV+H
Sbjct: 28 LALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHAC 85
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRV 269
D+ R G +FDT A+ L + +S+ Y L+ ++ K+ +DW
Sbjct: 86 SEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQ 144
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
RPL + +RYA +D +L +Y + +LS E L + + ++CR+ +
Sbjct: 145 RPLTEMQMRYAADDVQHLAQVYLALDARLSE-----EKRAWLLEDGAELVANLCRESDPR 199
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
E E G L QQLAV+ LC WR+ AR + +VL RTL +A+
Sbjct: 200 EAYREVKL-------GWRLRPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARL 252
Query: 390 LP 391
LP
Sbjct: 253 LP 254
>gi|313106280|ref|ZP_07792525.1| ribonuclease D [Pseudomonas aeruginosa 39016]
gi|355645431|ref|ZP_09054144.1| ribonuclease D [Pseudomonas sp. 2_1_26]
gi|386065119|ref|YP_005980423.1| ribonuclease D [Pseudomonas aeruginosa NCGM2.S1]
gi|421155212|ref|ZP_15614693.1| ribonuclease D [Pseudomonas aeruginosa ATCC 14886]
gi|421169151|ref|ZP_15627193.1| ribonuclease D [Pseudomonas aeruginosa ATCC 700888]
gi|310879027|gb|EFQ37621.1| ribonuclease D [Pseudomonas aeruginosa 39016]
gi|348033678|dbj|BAK89038.1| ribonuclease D [Pseudomonas aeruginosa NCGM2.S1]
gi|354828894|gb|EHF12994.1| ribonuclease D [Pseudomonas sp. 2_1_26]
gi|404520842|gb|EKA31492.1| ribonuclease D [Pseudomonas aeruginosa ATCC 14886]
gi|404527609|gb|EKA37756.1| ribonuclease D [Pseudomonas aeruginosa ATCC 700888]
Length = 374
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 17/242 (7%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
A+D E + +F L+Q+ +++++D L +Q E+ +D KV+H
Sbjct: 28 LALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHAC 85
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRV 269
D+ R G +FDT A+ L + +S+ Y L+ ++ K+ +DW
Sbjct: 86 SEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQ 144
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
RPL + +RYA +D +L +Y + +LS E L + + ++CR+ +
Sbjct: 145 RPLTEMQMRYAADDVQHLAQVYLALDARLSE-----EKRAWLLEDGAELVANLCRESDPR 199
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
E E G L QQLAV+ LC WR+ AR + +VL RTL +A+
Sbjct: 200 EAYREVKL-------GWRLRPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARL 252
Query: 390 LP 391
LP
Sbjct: 253 LP 254
>gi|392985222|ref|YP_006483809.1| ribonuclease D [Pseudomonas aeruginosa DK2]
gi|419751377|ref|ZP_14277789.1| ribonuclease D [Pseudomonas aeruginosa PADK2_CF510]
gi|384402151|gb|EIE48502.1| ribonuclease D [Pseudomonas aeruginosa PADK2_CF510]
gi|392320727|gb|AFM66107.1| ribonuclease D [Pseudomonas aeruginosa DK2]
Length = 376
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 17/242 (7%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
A+D E + +F L+Q+ +++++D L +Q E+ +D KV+H
Sbjct: 30 LALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHAC 87
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRV 269
D+ R G +FDT A+ L + +S+ Y L+ ++ K+ +DW
Sbjct: 88 SEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQ 146
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
RPL + +RYA +D +L +Y + +LS E L + + ++CR+ +
Sbjct: 147 RPLTEMQMRYAADDVQHLAQVYLALDARLSE-----EKRAWLLEDGAELVANLCRESDPR 201
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
E E G L QQLAV+ LC WR+ AR + +VL RTL +A+
Sbjct: 202 EAYREVKL-------GWRLRPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARL 254
Query: 390 LP 391
LP
Sbjct: 255 LP 256
>gi|433657124|ref|YP_007274503.1| Ribonuclease D [Vibrio parahaemolyticus BB22OP]
gi|432507812|gb|AGB09329.1| Ribonuclease D [Vibrio parahaemolyticus BB22OP]
Length = 388
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 121/269 (44%), Gaps = 14/269 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ + KDL+++ A+ + D +D E + R+F L+Q+ ++D +L
Sbjct: 19 YQIITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDPTEL-T 77
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
+ ++ E+ KD + KV+H D+ Q FG M DT + L ++
Sbjct: 78 DMTSFI-ELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFAT 136
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ + GV +K DW RPL + L YA D HYLL +Y+ + K+ +
Sbjct: 137 LVEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKV---------T 187
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
+ E ++ D+ +E EN+YL I G L +LAV+ L WR A
Sbjct: 188 EAGWWEAVQQESDLLVSKRIRETNEENAYLDIKG--AWQLKPSELAVLKPLATWRYREAI 245
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
D + ++ L+ +A+ T+ K+
Sbjct: 246 KRDLALNFIFKEGDLLTVARLGLTSFKKM 274
>gi|392545413|ref|ZP_10292550.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
rubra ATCC 29570]
Length = 377
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 127/296 (42%), Gaps = 24/296 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++ ++ +L AKL D A+D E + R+ L+Q+ ++D L
Sbjct: 3 YQFIQHQTELDAFTAKLADSDVLAIDTEFMRRRTLYPEIALIQVYNGEHLALIDPLSELD 62
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY- 248
G L + +D KV+H DI Q+ G +FDT A ++L E N + +
Sbjct: 63 FSG--LWHLLRDEQIVKVLHSPSEDIEVFQKFAGFVPAPLFDTQFALQLLG-EGNCVGFA 119
Query: 249 -LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
++ V +K DW RPL L YA D YLL Y+ + K++ E
Sbjct: 120 NMVKMMLDVELDKSMSRTDWLKRPLQASQLEYAAADVFYLLPCYESLSKKIA----EKGL 175
Query: 308 SDTPLTE----VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
SD ++E KR++ + ++YL++ L + LAV+ L WR
Sbjct: 176 SDIVISESQLIAQKRAFR-----------TPDAYLYLSVKNVWQLKPRDLAVLRELASWR 224
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
A + + +VL + ++EIAK+ P++ LR + + + R +L+ I
Sbjct: 225 QSKAEKKNLALNFVLKEQNMVEIAKRRPSSLNSLRNVPGVEQMEVNRSGKEILACI 280
>gi|218710187|ref|YP_002417808.1| Ribonuclease D [Vibrio splendidus LGP32]
gi|218323206|emb|CAV19383.1| Ribonuclease D [Vibrio splendidus LGP32]
Length = 397
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 123/261 (47%), Gaps = 16/261 (6%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ +VKDL+ + + + D +D E + R++ L+Q+ ++D + L
Sbjct: 28 YQIITQVKDLERVCQQAREADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIALD- 86
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
++ P++ + KD + KV+H D+ Q FG M DT + L ++
Sbjct: 87 EMTPFV-GLLKDTSVLKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFLGHGLSTGFAA 145
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD-IMKIKLSSMPKESEN 307
L+ F GV+ +K DW RPL + L YA D HYL+ +Y+ +++ + + E+
Sbjct: 146 LVSEFVGVDLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAAQ 205
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
++ L +V KR ++ +N+YL I G L QQLA++ L WR A
Sbjct: 206 QESDL-QVAKRI---------RKANPDNAYLDIKG--AWQLKPQQLAILRPLATWRLKEA 253
Query: 368 RADDESTGYVLPNRTLIEIAK 388
D + +V + L +A+
Sbjct: 254 IKRDLALNFVFKEQDLWAVAR 274
>gi|296129572|ref|YP_003636822.1| 3'-5' exonuclease [Cellulomonas flavigena DSM 20109]
gi|296021387|gb|ADG74623.1| 3'-5' exonuclease [Cellulomonas flavigena DSM 20109]
Length = 417
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 12/194 (6%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A +D+ L + G+ +FDT A+R+L +ER L ++ G+ KE+ D
Sbjct: 107 VLHAASQDLPGLA-EQGMRPSRVFDTELAARLLGMERVGLAAVVADTLGLGLAKEHSAVD 165
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP E LRYA D L+ + ++ +L+ K E ++ ++ R
Sbjct: 166 WSTRPLPTEWLRYAALDVEVLVEVRQVLAERLAVSGK---------AEWARQEFEAVRT- 215
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
+ + GL +A++LAVV L RD AR D S G VLP+ ++
Sbjct: 216 APPPAPRAEPWRRVSGLHNV-RDARRLAVVRELYATRDRNARERDISPGRVLPDAAIVAA 274
Query: 387 AKQLPTTAAKLRRL 400
A+ LP T +L L
Sbjct: 275 AQALPRTVGQLTAL 288
>gi|260878202|ref|ZP_05890557.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
gi|308090210|gb|EFO39905.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
Length = 372
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 118/269 (43%), Gaps = 14/269 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ + KDL+++ A+ + D +D E + R+F L+Q+ ++D +L
Sbjct: 19 YQIITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDPTELTD 78
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
E+ KD + KV+H D+ Q FG M DT + L ++
Sbjct: 79 MTS--FIELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFAT 136
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ + GV +K DW RPL + L YA D HYLL +Y+ + K+ +
Sbjct: 137 LVEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKV---------T 187
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
+ E ++ D+ +E EN+YL I G L +LAV+ L WR A
Sbjct: 188 EAGWWEAVQQESDLLVSKRIRETNEENAYLDIKG--AWQLKPSELAVLKPLATWRYREAI 245
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
D + ++ L+ +A+ T+ K+
Sbjct: 246 KRDLALNFIFKEGDLLTVARLGLTSFKKM 274
>gi|116251369|ref|YP_767207.1| ribonuclease D [Rhizobium leguminosarum bv. viciae 3841]
gi|115256017|emb|CAK07098.1| putative ribonuclease D [Rhizobium leguminosarum bv. viciae 3841]
Length = 381
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 122/270 (45%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
+++ DL +L D +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIQTTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ E+ D KV H A +DI + + +FDT A+ V + S + L+
Sbjct: 61 APFF-ELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVCGFGDSVSYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V+ +K + DW RPL D+ L YA D +L +Y +K +L + E +
Sbjct: 120 SRIKNVHIDKSSRFTDWSRRPLSDKQLDYALADVTHLRDVYLSLKAEL-----DREGRSS 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
L+E D+ ++ ++++ L+ Q+LA++ + WR+ ARA
Sbjct: 175 WLSE----EMDILESRETYDMHPDDAWQR---LKMRLRKPQELAILKYVAAWREREARAR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P L RL
Sbjct: 228 NVPRSRVLKDDAIYEIAQQQPKDTEALGRL 257
>gi|90020985|ref|YP_526812.1| ribonuclease D [Saccharophagus degradans 2-40]
gi|89950585|gb|ABD80600.1| ribonuclease D [Saccharophagus degradans 2-40]
Length = 386
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 128/296 (43%), Gaps = 21/296 (7%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
L + P + V++L+E + +S AVD E + +++ + L+Q++ ++++D
Sbjct: 5 LVKQPIHWISTVEELEECCERWQSKKLLAVDTEFMRSQTYYPIAGLIQVNDGEANYLLDP 64
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
+ P+ E+ D K +H D+ FG +FDT A + L +
Sbjct: 65 TTID-DFSPF-AEILVDDDIIKAIHSCSEDLEVFYHSFGFLPQRLFDTQIAGAFVNLGYS 122
Query: 245 -SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
++ GV K +DW RPL YA D YL ++ KL + K
Sbjct: 123 MGFARMVQGVLGVELPKTETRSDWLQRPLSVAQKHYAALDVEYLY----LLAGKLLTELK 178
Query: 304 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
E D V+ + + + L + SYL + LNA+QLA+ LCEWR
Sbjct: 179 AKERLDW----VFGEGKTIVKN-FSDNLDPKLSYLRVKN--AWKLNAKQLAIFQNLCEWR 231
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR-------RLLKSKHSYIERYM 412
++ A+ D+ ++ TL +A + P ++LR R++++ Y+ R +
Sbjct: 232 ELTAQKRDKPRNRIVKENTLFAMALKRPKHISQLRNYEGMSDRVIRTDGEYLLRLI 287
>gi|453070952|ref|ZP_21974179.1| ribonuclease D [Rhodococcus qingshengii BKS 20-40]
gi|452760035|gb|EME18378.1| ribonuclease D [Rhodococcus qingshengii BKS 20-40]
Length = 429
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 108/252 (42%), Gaps = 20/252 (7%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+Q+ F++D + + P L EV + V+H
Sbjct: 49 LAVDAERASGFRYSARAYLIQLRREGAGSFLLDPIPTAQDLQP-LAEVIN--PLQWVLHS 105
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L + G+ +FDT A R+ ER L ++ V K + ADW R
Sbjct: 106 ADQDLPGLA-ELGLTPAELFDTELAGRLAGFERVGLAAIVERTLRVELRKGHGAADWSTR 164
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLPD L YA D LL + D M+ +L S K E K ++ R +
Sbjct: 165 PLPDAWLNYAALDVEVLLELRDAMEAELESQGK---------LEWAKEEFEYIRLAGPPK 215
Query: 331 LLSE--NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 388
+ HI L+ +QLA V L + R+ +AR D S VLP+ +I+ A
Sbjct: 216 PKPDRWRRTSHITSLK----TTRQLAAVRALWQAREDLARKRDVSPSRVLPDSAIIDAAL 271
Query: 389 QLPTTAAKLRRL 400
+ P + LR L
Sbjct: 272 KDPRSLDALRSL 283
>gi|28897645|ref|NP_797250.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
gi|417320410|ref|ZP_12106956.1| ribonuclease D [Vibrio parahaemolyticus 10329]
gi|28805858|dbj|BAC59134.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
gi|328473373|gb|EGF44221.1| ribonuclease D [Vibrio parahaemolyticus 10329]
Length = 388
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 121/269 (44%), Gaps = 14/269 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ + KDL+++ A+ + D +D E + R+F L+Q+ ++D +L
Sbjct: 19 YQIITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDPTEL-T 77
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
+ ++ E+ KD + KV+H D+ Q FG M DT + L ++
Sbjct: 78 DMTSFI-ELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFAT 136
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ + GV +K DW RPL + L YA D HYLL +Y+ + K+ +
Sbjct: 137 LVEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKV---------T 187
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
+ E ++ D+ +E EN+YL I G L +LAV+ L WR A
Sbjct: 188 EAGWWEAVQQESDLLVSKRIRETNEENAYLDIKG--AWQLKPSELAVLKPLATWRYREAI 245
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
D + ++ L+ +A+ T+ K+
Sbjct: 246 KRDLALNFIFKEGDLLTVARLGLTSFKKM 274
>gi|336177812|ref|YP_004583187.1| 3'-5' exonuclease [Frankia symbiont of Datisca glomerata]
gi|334858792|gb|AEH09266.1| 3'-5' exonuclease [Frankia symbiont of Datisca glomerata]
Length = 474
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 20/198 (10%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A++D+ L + G+ +FDT A R+L ER L ++ G K + AD
Sbjct: 109 VLHAANQDLPCLA-EVGLRPSRLFDTELAGRLLGYERVGLGIMVEKVLGFTLEKGHSAAD 167
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP+ LRYA D L+ + D ++ +L + K + + +
Sbjct: 168 WSTRPLPEPWLRYAALDVELLVELRDALETELETQGKLA---------FAREEFAAIAAA 218
Query: 327 YEKE----LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 382
+E L S +H N +QLA V + RD IAR D + G VLP+
Sbjct: 219 PPREPRPGLWRRTSGIHRV------RNRRQLAAVRSMWTTRDRIARERDIAPGRVLPDSA 272
Query: 383 LIEIAKQLPTTAAKLRRL 400
+IE P L RL
Sbjct: 273 IIEAVLAAPADIEALTRL 290
>gi|302383325|ref|YP_003819148.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
gi|302193953|gb|ADL01525.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
Length = 382
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 117/268 (43%), Gaps = 25/268 (9%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L + + + S AVD E + ++ CL+Q +T T + ++D + + P+L ++
Sbjct: 10 LVQFCSDVASAPFIAVDTEFMRETTYWPKLCLIQAATPTHEAIIDPQADGLDLTPFL-DI 68
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHFCGVN 257
+DP KV H A +D + G MFDT A+ ++ + + L+ ++
Sbjct: 69 LRDPAIVKVFHAARQDTEIFVK-LGAMPKPMFDTQVAAMAAGFGDQVAYDGLVRQMLKID 127
Query: 258 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDTPLT 313
+K + DW RPL D L YA D +L +Y ++ +L+ + SE D
Sbjct: 128 LDKGSRFTDWSRRPLSDAQLTYAIGDVTHLAALYPKLRDRLAREGRLDWVTSEMEDLVNP 187
Query: 314 EVYKRSYD-VCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
E+Y + D ++L K+ NA+ LA WR+ A+ D+
Sbjct: 188 ELYDTTPDKAWKRLKPKKY-----------------NAKYLAAFKATAVWREQAAQDRDQ 230
Query: 373 STGYVLPNRTLIEIAKQLPTTAAKLRRL 400
G +L + + EIA Q+PT RL
Sbjct: 231 PRGRILKDEAIDEIATQVPTDVEAFNRL 258
>gi|53803525|ref|YP_114794.1| ribonuclease D [Methylococcus capsulatus str. Bath]
gi|53757286|gb|AAU91577.1| ribonuclease D [Methylococcus capsulatus str. Bath]
Length = 388
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 128/292 (43%), Gaps = 29/292 (9%)
Query: 141 ELAAKLKSVD---EFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLRE 197
ELAA +S+ AVD E + +++ CL+QI+ T+ +D L + LRE
Sbjct: 17 ELAAFCRSIGGSPWIAVDTEFMRDKTYYPKFCLLQIANGTQAACIDPLAIE-----DLRE 71
Query: 198 V---FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL-KLERNSLEYLLHHF 253
V + KV H A +D+ F +FDT A+ ++ E+ L+
Sbjct: 72 VECLLFNRAITKVFHAARQDLEIFFHRFRAVPAPIFDTQLAAPLVGHPEQVGYASLVSAM 131
Query: 254 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT 313
GV +KE+ DW RPL YA D +L +Y M+ +L + +
Sbjct: 132 LGVTVDKEHTRTDWSQRPLSAAQKEYAANDVIHLAALYPRMREQLERLGR---------- 181
Query: 314 EVYKRSYDVCRQLYEKELL---SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
Y D L E +L E+++ I GL L +Q A+ L WR+ A+ +
Sbjct: 182 --YAWLVDEFAALEEPDLYVNRPEDAWQRIGGLDR--LKPEQFALAVRLAAWRENTAQQN 237
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
D ++L + L+EIA + P L+ L ++RY ++++++++
Sbjct: 238 DLPRNWILRDEALLEIALRRPRNRDALQALRGIDSRMVQRYGDAMIALVQDA 289
>gi|338740923|ref|YP_004677885.1| ribonuclease D (RNase D) [Hyphomicrobium sp. MC1]
gi|337761486|emb|CCB67319.1| ribonuclease D (RNase D) [Hyphomicrobium sp. MC1]
Length = 421
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 127/281 (45%), Gaps = 16/281 (5%)
Query: 122 PPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV 181
P ++ +++ +L L L + AVD E + ++F L CL+Q++ + V
Sbjct: 30 PCAIGVALMRMITTTSELSALCDVLAKSEYVAVDTEFLREQTFWPLLCLIQLAGPEAEAV 89
Query: 182 VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL 241
VD L + + P+ + + + KV H A +DI + + +FD+ A+ V
Sbjct: 90 VDPLSPGIDLTPFY-NLMANESVVKVFHAARQDIEIVYLKSQVVPTPVFDSQVAAMVCGY 148
Query: 242 ERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
+S+ Y L+ GV+ +K + DW RPL D+ L YA D +L +Y +K L
Sbjct: 149 G-DSISYVNLVKKTTGVDLDKSSRFTDWSRRPLSDKQLDYALADVTHLRDVYVRLKQMLE 207
Query: 300 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 359
+ + + +YD EN++ + L+ G + LAV+ L
Sbjct: 208 KTGRTPWLQEEMEVLISPSTYDAK---------PENAWQRL-KLRVKG--RKSLAVLIEL 255
Query: 360 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
WR+ +A+ D G VL + L +IA QLP +A L +L
Sbjct: 256 AAWRERMAQQLDVPRGRVLRDDALYDIANQLPASADALGQL 296
>gi|153840116|ref|ZP_01992783.1| ribonuclease D, partial [Vibrio parahaemolyticus AQ3810]
gi|149746274|gb|EDM57352.1| ribonuclease D [Vibrio parahaemolyticus AQ3810]
Length = 341
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 118/269 (43%), Gaps = 14/269 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ + KDL+++ A+ + D +D E + R+F L+Q+ ++D +L
Sbjct: 19 YQIITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDPTELTD 78
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
E+ KD + KV+H D+ Q FG M DT + L ++
Sbjct: 79 MTS--FIELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFAT 136
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ + GV +K DW RPL + L YA D HYLL +Y+ + K+ +
Sbjct: 137 LVEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKV---------T 187
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
+ E ++ D+ +E EN+YL I G L +LAV+ L WR A
Sbjct: 188 EAGWWEAVQQESDLLVSKRIRETNEENAYLDIKG--AWQLKPSELAVLKPLATWRYREAI 245
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
D + ++ L+ +A+ T+ K+
Sbjct: 246 KRDLALNFIFKEGDLLTVARLGLTSFKKM 274
>gi|260901199|ref|ZP_05909594.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
gi|308106837|gb|EFO44377.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
Length = 354
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 118/269 (43%), Gaps = 14/269 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ + KDL+++ A+ + D +D E + R+F L+Q+ ++D +L
Sbjct: 19 YQIITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDPTELTD 78
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
E+ KD + KV+H D+ Q FG M DT + L ++
Sbjct: 79 MTS--FIELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFAT 136
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ + GV +K DW RPL + L YA D HYLL +Y+ + K+ +
Sbjct: 137 LVEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKV---------T 187
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
+ E ++ D+ +E EN+YL I G L +LAV+ L WR A
Sbjct: 188 EAGWWEAVQQESDLLVSKRIRETNEENAYLDIKG--AWQLKPSELAVLKPLATWRYREAI 245
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
D + ++ L+ +A+ T+ K+
Sbjct: 246 KRDLALNFIFKEGDLLTVARLGLTSFKKM 274
>gi|147772956|emb|CAN67183.1| hypothetical protein VITISV_007528 [Vitis vinifera]
Length = 1587
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 315 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVA 357
VYKRS+D+C QLYEKELL+++SYL+ YGLQGA NAQQLA+VA
Sbjct: 1504 VYKRSFDICMQLYEKELLTDSSYLYTYGLQGAHFNAQQLAIVA 1546
>gi|229491276|ref|ZP_04385102.1| ribonuclease D [Rhodococcus erythropolis SK121]
gi|229321815|gb|EEN87610.1| ribonuclease D [Rhodococcus erythropolis SK121]
Length = 431
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 108/252 (42%), Gaps = 20/252 (7%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+Q+ F++D + + P L EV + V+H
Sbjct: 51 LAVDAERASGFRYSARAYLIQLRREGAGSFLLDPIPTAQDLQP-LAEVIN--PLQWVLHS 107
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L + G+ +FDT A R+ ER L ++ V K + ADW R
Sbjct: 108 ADQDLPGLA-ELGLTPAELFDTELAGRLAGFERVGLAAIVERTLRVELRKGHGAADWSTR 166
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLPD L YA D LL + D M+ +L S K E K ++ R +
Sbjct: 167 PLPDAWLNYAALDVEVLLELRDAMEAELESQGK---------LEWAKEEFEYIRLAGPPK 217
Query: 331 LLSE--NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 388
+ HI L+ +QLA V L + R+ +AR D S VLP+ +I+ A
Sbjct: 218 PKPDRWRRTSHITSLK----TTRQLAAVRALWQAREDLARKRDVSPSRVLPDSAIIDAAL 273
Query: 389 QLPTTAAKLRRL 400
+ P + LR L
Sbjct: 274 KDPRSLDALRSL 285
>gi|254419933|ref|ZP_05033657.1| ribonuclease D [Brevundimonas sp. BAL3]
gi|196186110|gb|EDX81086.1| ribonuclease D [Brevundimonas sp. BAL3]
Length = 383
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 114/263 (43%), Gaps = 15/263 (5%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L + A+L + VD E + ++ CL+Q ++ ++D + + + P+L ++
Sbjct: 10 LADFCARLATAPFITVDTEFMRETTYWPRLCLIQAASADHAGIIDPMAEGLDLEPFL-DL 68
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHFCGVN 257
+DP KV H +D+ R G MFDT A+ E+ + + L+ V
Sbjct: 69 LRDPKIIKVFHACRQDVEIFVR-LGAMPRPMFDTQVAAMAAGFGEQVAYDSLVRQMLRVE 127
Query: 258 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYK 317
+K + DW RPL D L YA D +L +Y ++ +L K+ D ++E+
Sbjct: 128 LDKGSRFTDWARRPLSDSQLVYALGDVTHLAALYPKLRDRL----KKEGRLDWVMSEM-- 181
Query: 318 RSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYV 377
L + L N L+ +A+ LA + WR+ A+ D+ G +
Sbjct: 182 ------ESLIDPALYDTNPENAWKRLKPKKFSAKYLAAFKAVAVWRERAAQERDQPRGRI 235
Query: 378 LPNRTLIEIAKQLPTTAAKLRRL 400
L + + E+A+Q PT RL
Sbjct: 236 LKDEGIDEVAQQTPTDPEAFNRL 258
>gi|333369485|ref|ZP_08461599.1| ribonuclease D [Psychrobacter sp. 1501(2011)]
gi|332971116|gb|EGK10083.1| ribonuclease D [Psychrobacter sp. 1501(2011)]
Length = 437
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 138/311 (44%), Gaps = 46/311 (14%)
Query: 129 PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLR 188
P V + + L+ L++ D A+D E + ++ + L+QI+T +++D KL
Sbjct: 49 PVHWVSDFEALEACLDDLETRDRVALDTEFIKRSTYFPILALVQINTGECIYLIDAPKL- 107
Query: 189 VQVGPYLREVFKDPTKKKVMHGADRDIVW--LQRDFGIY--------LCNMFDTGQASRV 238
D T+ V+ ++W D GI+ L N+FDT A
Sbjct: 108 ------------DLTEFWVVLEEMPLMIWHACGEDLGIFYLLSESPALTNVFDTQIALSY 155
Query: 239 LKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 297
L + + + L V+ +K +DW RPL E YA +D YLL +YDI++ +
Sbjct: 156 LTGQLQMGYQQALSQELDVHVDKGESQSDWLARPLTHEQESYAIDDVRYLLNLYDILQQQ 215
Query: 298 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGLQGAGLNAQ 351
L+ K+S + + + C QLY KEL + +YL + + G +
Sbjct: 216 LT---KQS---------LLDKVIEDC-QLYTKELYEAANIEDDATYLAMADFRYTG---E 259
Query: 352 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 411
Q+AV+ + WR+ +ARA ++ ++L + + ++ + P + +L + S I Y
Sbjct: 260 QMAVLQAVSSWREALARATNQPKTFILKKQAVRDVVVEFPKSVKQLTQKTTMHRSMIHLY 319
Query: 412 MGPVLSIIKNS 422
++ II +
Sbjct: 320 GEELIDIINKA 330
>gi|420242846|ref|ZP_14746836.1| ribonuclease D [Rhizobium sp. CF080]
gi|398065160|gb|EJL56813.1| ribonuclease D [Rhizobium sp. CF080]
Length = 381
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 121/270 (44%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
+++ L+E +L D +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIQTTAALEEACIQLAQSDFITIDTEFLRETTFWPELCLIQMASPTVEVLVDPLAKGLSL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ E+ +P KV H A +DI + + +FDT A+ V + S + L+
Sbjct: 61 KPFF-ELMANPAVIKVFHAARQDIEIIHHLGNLVPHPIFDTQVAAMVCGFGDSVSYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V+ +K + DW RPL D+ L YA D +L +Y +K +L E E
Sbjct: 120 SRIKDVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLFLKAQL-----EREGRAL 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
LTE V +L ++++ L+ +LAV+ + WR+ AR+
Sbjct: 175 WLTE----EMAVLESPGTYDLHPDDAWAR---LKSRLRKPTELAVLKYVAAWREREARSR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P + RL
Sbjct: 228 NVPRSRVLKDDAIYEIAQQQPKDVEAMSRL 257
>gi|359407673|ref|ZP_09200148.1| ribonuclease D [SAR116 cluster alpha proteobacterium HIMB100]
gi|356677306|gb|EHI49652.1| ribonuclease D [SAR116 cluster alpha proteobacterium HIMB100]
Length = 387
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 159/376 (42%), Gaps = 50/376 (13%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ +DL A + D AVD E + ++ CL+Q+ + +D L + +
Sbjct: 7 LITSTEDLVSALADMAGADFVAVDTEFMRETTYYPKLCLVQLCANEKTVCIDPLAEGIDL 66
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
L + ++P KV H +D+ G ++DT A+ V L ++ + L+
Sbjct: 67 SA-LYALMQNPNIVKVFHAGRQDLEIFVHLTGSVPQPVYDTQIAAMVCGLGDQVGYDKLV 125
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
H+ G + +K + +W RPL D ++YA +D YL IY ++ E+ ++
Sbjct: 126 QHYTGKSIDKSSRFTNWAERPLTDRQIKYAADDVIYLAEIYP----RIVDYLNETTRTNW 181
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYL----HIY-GLQGAGLNAQQLAVVAGLCEWRDV 365
+E+ L E YL I+ L+ G + +A L EWR+
Sbjct: 182 VESEL-------------NLLTDETIYLPDPATIWRRLKFRGGRPDMVNRLAKLAEWRET 228
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQN 425
++ D G +L + TLI++A P TA + R++ + + PVL I+K + +
Sbjct: 229 ESQRRDVPRGRLLRDDTLIDLAGSNPKTAPEFRKIRGFPGGETGKLVKPVLQILKQAAET 288
Query: 426 ------------------AANFEVIAQKLKE--ERMEVA------SEETEVLVLDTSSNL 459
A E++ LK E+ EVA ++E E L LD ++++
Sbjct: 289 PKEEYPHLELPEKQVKPPQAVIELLRVLLKHVSEQHEVAPRLIANADELERLALDDTADI 348
Query: 460 KIPNVGRESVDGVDAL 475
+ + R + G AL
Sbjct: 349 AVLSGWRHEIFGKLAL 364
>gi|441513674|ref|ZP_20995502.1| ribonuclease D [Gordonia amicalis NBRC 100051]
gi|441451620|dbj|GAC53463.1| ribonuclease D [Gordonia amicalis NBRC 100051]
Length = 424
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 120/274 (43%), Gaps = 16/274 (5%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+QI R F++D + + P + + + P + V+H
Sbjct: 51 IAVDTERASGYRYSQRAYLIQIKRRGAGSFLLDPIADPGALAPVI-DALRGP--EWVLHA 107
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L R+ G ++DT A R+L L + +L ++ F G+ K + ADW R
Sbjct: 108 ADQDLPCL-RELGFECVELYDTELAGRLLGLAKVNLAAMVAQFLGLGLLKGHGAADWSRR 166
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLPDE L YA D L+ + D M L+ K+ + V R R +
Sbjct: 167 PLPDEWLNYAALDVEVLVELRDAMDAALAESGKDGWAREE-FAYVLSRPPAPPR----TD 221
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+ S +H +A+ LA V L R+ +A D + G VLP+ ++ A
Sbjct: 222 RWRKTSNIHTVK------SARALAAVRELWMAREELAERRDVAPGRVLPDTAIVNAATAD 275
Query: 391 PTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 424
P + ++L RL R G LS ++ + +
Sbjct: 276 PRSNSELTRLPIFGGPRQRRQAGIWLSALQRARE 309
>gi|254502050|ref|ZP_05114201.1| ribonuclease D [Labrenzia alexandrii DFL-11]
gi|222438121|gb|EEE44800.1| ribonuclease D [Labrenzia alexandrii DFL-11]
Length = 392
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 121/276 (43%), Gaps = 22/276 (7%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+++ + KDL +L + D VD E + +F C++Q++ F+VD L +
Sbjct: 1 MEVITKTKDLAAACQRLATNDYVTVDTEFLRETTFWPKLCVIQMAGTEMAFIVDALAEGL 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEY 248
+ P+ ++ +D + KV H A +DI + G+ +FDT A+ V + S +
Sbjct: 61 DLEPFF-DLMRDDSVTKVFHAARQDIEIIYHLGGLIPAPLFDTQVAAMVCGFGDSISYDQ 119
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L++ G +K + DW RPL + L YA D +L + +K L+ +
Sbjct: 120 LVYKVTGARIDKSSRFTDWARRPLTAKQLDYALADVTHLRDAFQFLKANLAEQNRTHWVQ 179
Query: 309 D--TPLTEV--YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
D T LT V Y+ D Q +++ L + +LAV+ + WR+
Sbjct: 180 DEMTVLTSVATYRADPD---QAWKRLKLRVRKPV-------------ELAVMMEVAAWRE 223
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
A+ D V+ + + E+A Q P T L RL
Sbjct: 224 TEAQNRDVPRSRVIKDDAIYELAAQQPVTTEALGRL 259
>gi|403530625|ref|YP_006665154.1| ribonuclease D [Bartonella quintana RM-11]
gi|403232696|gb|AFR26439.1| ribonuclease D [Bartonella quintana RM-11]
Length = 419
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 121/272 (44%), Gaps = 14/272 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+L+ + DL+ A L+ D VD E + +F CL+Q+++ ++D + +
Sbjct: 37 MRLITQTTDLEIALAALRPSDFVTVDTEFIRETTFWPQLCLIQLASPDVTMLIDPMAQDM 96
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEY 248
+ P+ ++ D KV H A +DI + G+ +FDT A + + S +
Sbjct: 97 DLKPFF-DLMVDEKIVKVFHAARQDIEIIYHLGGVIPYPLFDTQIAGSICGFGDSISYDQ 155
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
++ G +K + DW RPL ++ L YA D YL +Y ++K +L +
Sbjct: 156 IVQRCTGHQLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRMHWMD 215
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
D T ++YD+ EN ++G ++LAV+ + WR+ AR
Sbjct: 216 DEITTLSTPKTYDI----------PENEAWK--KVKGKIKKPRELAVLQKIAAWREREAR 263
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ +++ + LIEIA Q P + L RL
Sbjct: 264 RYNVPRRHIMKDECLIEIAIQQPKDESALNRL 295
>gi|452749487|ref|ZP_21949248.1| ribonuclease D [Pseudomonas stutzeri NF13]
gi|452006600|gb|EMD98871.1| ribonuclease D [Pseudomonas stutzeri NF13]
Length = 374
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 118/264 (44%), Gaps = 17/264 (6%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L L A+ + + AVD E + +F + L+Q+ +++D L +R +
Sbjct: 14 LTRLCAEWRQLPYVAVDTEFMRVDTFYPIAGLIQVGDGRRAYLIDPLSVRDWSS--FAAL 71
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGV 256
+DP KV+H D+ L R G +FDT A+ L + S+ Y L+ G+
Sbjct: 72 LQDPAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIG-FSMGYSRLVQAVLGI 130
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
K +DW RPL D +RYA ED +L +Y+ + +PK SE+ V
Sbjct: 131 ELPKGETRSDWLQRPLSDMQVRYAAEDAQHLAELYEAL------LPKLSEDKR---AWVL 181
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
+ ++ L ++E +Y + Q L QQLAV+ L WR+ ARA ++
Sbjct: 182 EDGAELVTNL-QRESDPNEAYRDVK--QAWRLKPQQLAVLKVLTAWRERQARARNQPRNR 238
Query: 377 VLPNRTLIEIAKQLPTTAAKLRRL 400
VL +L +A+ P L R+
Sbjct: 239 VLREASLWPLARTQPRDLVTLARI 262
>gi|403512793|ref|YP_006644431.1| 3'-5' exonuclease family protein [Nocardiopsis alba ATCC BAA-2165]
gi|402802886|gb|AFR10296.1| 3'-5' exonuclease family protein [Nocardiopsis alba ATCC BAA-2165]
Length = 444
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 12/220 (5%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A +D+ L + + +FDT A R+L +R L +++ + KE+ D
Sbjct: 132 VLHAAHQDLPCLA-EVNLRPGRLFDTELAGRLLGYQRVGLGFMVERLLDIRLAKEHSAVD 190
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP++ LRYA D L+ + D ++ +L K E + +
Sbjct: 191 WSQRPLPEDWLRYAALDVEILIELRDRLEAELEEAGK---------LEWAREEFAAILAA 241
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
KE + + + G+ + LA V L RD IAR D S G VLP+ ++E
Sbjct: 242 PPKEPRT-DPWRRTSGIHKV-RKQRSLAAVRELWYERDRIARERDTSPGRVLPDAAIVEA 299
Query: 387 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 426
A +P A +L R+ + RY L I + A
Sbjct: 300 ATTMPRDANELNRIRQFGIKLARRYPATWLKAIDRARDMA 339
>gi|297561776|ref|YP_003680750.1| 3'-5' exonuclease [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
gi|296846224|gb|ADH68244.1| 3'-5' exonuclease [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
Length = 421
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 46/223 (20%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A +D+ L + + ++FDT A R+L +R L +++ + KE+ D
Sbjct: 109 VLHAAHQDLPCLS-EINLRPRSLFDTELAGRLLGYQRVGLGFMVERLLHLRLAKEHSAVD 167
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIK-----------------LSSMPKESENSD 309
W RPLP++ LRYA D L+ + D ++++ LS+ PKE
Sbjct: 168 WSQRPLPEDWLRYAALDVEILIDLRDSLEVELEETGKLEWAREEFAAVLSAPPKE----- 222
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
P T+ ++R+ + R N + LA V L RD IA+
Sbjct: 223 -PRTDPWRRTSGIHRV----------------------RNQRALAAVRELWYERDRIAQE 259
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 412
D S G VLP+ ++E A +P T +L ++ + RY+
Sbjct: 260 RDISPGRVLPDAAIVEAATAMPRTTTELAKIRQFGIKLARRYL 302
>gi|256822615|ref|YP_003146578.1| ribonuclease D [Kangiella koreensis DSM 16069]
gi|256796154|gb|ACV26810.1| ribonuclease D [Kangiella koreensis DSM 16069]
Length = 384
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 123/275 (44%), Gaps = 29/275 (10%)
Query: 133 VEEVKD---LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
VE V D L+EL ++ E AVD E ++ ++ L+QI E +++D L
Sbjct: 15 VETVSDPERLQELCQSWLALKELAVDTEFDRTNTYFHRLALIQIYDGKEIYLIDPLAFDD 74
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY- 248
L E+F + K +H D+ L +G +FDT A+ + + S+ Y
Sbjct: 75 LSA--LTELFASTSVVKALHSCSEDLEALYHQYGFEFNQVFDTQIAASLDGIGL-SVGYG 131
Query: 249 -LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY-----DIMKIKLSSMP 302
++ HF V +KE+ DW RPL E YA +D YL+ +Y +++ L
Sbjct: 132 NIVEHFLSVVLDKEHTKTDWLQRPLSQEQRVYAAQDVQYLMPVYYRLRDSLLEKGLFECV 191
Query: 303 KESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEW 362
E NS + + + + +E +YL + G LN QL + L +W
Sbjct: 192 IEDVNS-------------IFAAIIQADDYAE-AYLKVKG--AFRLNQFQLNRLQKLAQW 235
Query: 363 RDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
R+ +AR ++ +V + LIE++++ T+ L
Sbjct: 236 RETLARDNNIPKTFVFRDHHLIEVSQKEKTSIGDL 270
>gi|226185448|dbj|BAH33552.1| putative ribonuclease D [Rhodococcus erythropolis PR4]
Length = 429
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 88/196 (44%), Gaps = 16/196 (8%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H AD+D+ L + G+ +FDT A R+ ER L ++ V K + AD
Sbjct: 102 VLHSADQDLPGLA-ELGLTPAELFDTELAGRLAGFERVGLAAIVERTLRVELRKGHGAAD 160
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLPD L YA D LL + D M+ +L S K E K ++ R
Sbjct: 161 WSTRPLPDAWLNYAALDVEVLLELRDAMEAELESQGK---------LEWAKEEFEYIRLA 211
Query: 327 YEKELLSE--NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 384
+ + HI L+ +QLA V L + R+ +AR D S VLP+ +I
Sbjct: 212 GPPKPKPDRWRRTSHITSLK----TTRQLAAVRALWQAREDLARKRDVSPSRVLPDSAII 267
Query: 385 EIAKQLPTTAAKLRRL 400
+ A + P + LR L
Sbjct: 268 DAALKDPQSLDALRSL 283
>gi|260895639|ref|ZP_05904135.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
gi|308088174|gb|EFO37869.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
Length = 325
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 118/269 (43%), Gaps = 14/269 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ + KDL+++ A+ + D +D E + R+F L+Q+ ++D +L
Sbjct: 19 YQIITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDPTELTD 78
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
E+ KD + KV+H D+ Q FG M DT + L ++
Sbjct: 79 MTS--FIELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFAT 136
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ + GV +K DW RPL + L YA D HYLL +Y+ + K+ +
Sbjct: 137 LVEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKV---------T 187
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
+ E ++ D+ +E EN+YL I G L +LAV+ L WR A
Sbjct: 188 EAGWWEAVQQESDLLVSKRIRETNEENAYLDIKG--AWQLKPSELAVLKPLATWRYREAI 245
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
D + ++ L+ +A+ T+ K+
Sbjct: 246 KRDLALNFIFKEGDLLTVARLGLTSFKKM 274
>gi|444311740|ref|ZP_21147342.1| ribonuclease D [Ochrobactrum intermedium M86]
gi|443484862|gb|ELT47662.1| ribonuclease D [Ochrobactrum intermedium M86]
Length = 385
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 120/270 (44%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + L+E + L D VD E + +F CL+Q+++ +VD L + +
Sbjct: 3 LITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ R + D KV H A +DI + + +FD+ A+ V + S + L+
Sbjct: 63 APFFR-LMADEKVVKVFHAARQDIEIVFHLGDLIPSPVFDSQVAAMVCGFGDAISYDQLV 121
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G + +K + DWR RPL ++ L YA D YL IY +K +L + ++
Sbjct: 122 QKVTGKHIDKSSRFTDWRRRPLSEKQLDYALADVTYLRDIYLYLKQELEKEGRSEWVNEE 181
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ +YD L ++++ + + + A+V + WR+ AR
Sbjct: 182 MAVLTSRETYD---------LHPDDAWRRV---KARVRKPIEQAIVQAVAAWREREARER 229
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ G ++ + T+ EIA+Q P A L RL
Sbjct: 230 NVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|85712692|ref|ZP_01043738.1| Ribonuclease D [Idiomarina baltica OS145]
gi|85693542|gb|EAQ31494.1| Ribonuclease D [Idiomarina baltica OS145]
Length = 367
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 123/266 (46%), Gaps = 18/266 (6%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L E + + FA+D E + +++ L+Q++ E F++D L + + + L ++
Sbjct: 2 LTEFCQRARLAGSFAIDTEFVRRKTYFANLGLVQLNVDGETFIIDPL-IDIDLTA-LWQL 59
Query: 199 FKDPTKKKVMHGADRDI-VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY---LLHHFC 254
DP V+H DI ++ + G +FDT A+ + + +SL Y + F
Sbjct: 60 IADPDVVTVLHAGGEDIELFYHQSNGQKPRAVFDTQIAAGFIGMG-SSLGYASLVEQLFD 118
Query: 255 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 314
GV +K DW RPL +E L YA D YL +Y + +++ + +
Sbjct: 119 GVTLDKSQSRTDWLKRPLSEEQLTYAAADVSYLNSMYPWLVEQVAQAHVADIVVEESQLQ 178
Query: 315 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 374
V KR+ + R L L+++ LN +QL V+ L WR A +++
Sbjct: 179 VSKRTQVIPRHL-----------LYLFVGNAWQLNQKQLQVMKALAAWRLDKAMSENMPL 227
Query: 375 GYVLPNRTLIEIAKQLPTTAAKLRRL 400
G++ + L+E+A+++P + + L ++
Sbjct: 228 GFIFKDGVLLELARKMPQSKSDLYKI 253
>gi|426401752|ref|YP_007020724.1| ribonuclease D [Candidatus Endolissoclinum patella L2]
gi|425858420|gb|AFX99456.1| ribonuclease D [Candidatus Endolissoclinum patella L2]
Length = 386
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 155/336 (46%), Gaps = 35/336 (10%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
KL+ + + L + ++ A+D E + +++ CL+Q++ + +DTL +
Sbjct: 1 MKLITDTQTLSAVCERIAKEPYVAIDTEFLRDKTYYSKLCLVQLAGEHDVVAIDTLAPDI 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN-----MFDTGQASRVLKLERN 244
P L ++ + KV H A +D + ++L + +FDT A V N
Sbjct: 61 NPMP-LFDLMANHNVLKVFHAARQD-----TEIFVHLTSQVPVPIFDTQIAGMVCGFG-N 113
Query: 245 SLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 302
++ Y ++ GV +K Y+ DW RPL + + YA +D +L Y+ + +L+
Sbjct: 114 AVSYDRMVRAITGVTIDKSYRFTDWSRRPLSKQQIDYALDDVIHLRPCYECLSNRLTQTD 173
Query: 303 --KESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 360
K E LT++ +Y + + Y K + + ++ ++ L V+ L
Sbjct: 174 RLKWLEEEMAILTDI--STYIIKPEEYWKRIKTHSNKQNV------------LVVLRALA 219
Query: 361 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL--RRLLKSKHSYIERYMGPVLSI 418
WR++ A+ D Y+L + L+ IA QLPT++A+L R K + + +L +
Sbjct: 220 AWRELKAQKIDIPRNYILRDNALVSIASQLPTSSAELSCSRFFNQKFAN-SIIIKEILEV 278
Query: 419 IKNSMQNAANF--EVIAQKLKEERMEVASEETEVLV 452
I+ ++++ N +VI + K + + +E +VL+
Sbjct: 279 IQTALKSPKNTWPQVIHHQGKTRKRQPIAEMLQVLL 314
>gi|381165928|ref|ZP_09875147.1| Ribonuclease D (RNase D) [Phaeospirillum molischianum DSM 120]
gi|380684912|emb|CCG39959.1| Ribonuclease D (RNase D) [Phaeospirillum molischianum DSM 120]
Length = 399
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 118/284 (41%), Gaps = 16/284 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++ + + L +LK+ VD E + +++ + CL+Q+ E V+D L + +
Sbjct: 3 MISDTESLAAFCQRLKTASFVTVDTEFMREKTYWPILCLVQVGGPDEAHVIDPLAPGIDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P L E+ D + KV H A +D+ G +FDT A+ V + S E L
Sbjct: 63 AP-LFELMADTSVLKVFHAARQDVEIFLHIAGALPNPLFDTQVAAMVCGFGDAVSYETLA 121
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
+K + DW +RPL D+ ++YA D +L Y+ + KL + ++
Sbjct: 122 SQLAKARIDKSLRFTDWSIRPLSDKQIQYALADVTHLRVAYEKLVRKLERNGRLEWLAEE 181
Query: 311 PLTEVYKRSYDV-CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
+Y V Q + + NS + L+V+ L WR+ A+
Sbjct: 182 MAILADPATYRVDPAQAWRRLKPRSNS-------------PRFLSVLKELAAWREHEAQD 228
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 413
D VL + TL EIA P A+L R+ +E MG
Sbjct: 229 RDLPRQRVLRDETLTEIAAHHPRDTAELARMRGIGKGLVEGRMG 272
>gi|452750774|ref|ZP_21950521.1| Ribonuclease D [alpha proteobacterium JLT2015]
gi|451961968|gb|EMD84377.1| Ribonuclease D [alpha proteobacterium JLT2015]
Length = 387
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 123/272 (45%), Gaps = 15/272 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++ + + LK+L +L+ VD E + ++ CL+Q+++ E VD K +
Sbjct: 4 YQFITDTASLKDLCQRLERAPFVTVDTEFMRESTYYPDLCLIQVASPDEAAAVDP-KADM 62
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEY 248
+ P L ++ KVMH A +D+ + G +FDT A+ L L E+ S
Sbjct: 63 DLSPLL-DLITRAEVLKVMHAAGQDVEIIYNRTGETPWPLFDTQIAAMALGLGEQVSYAT 121
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ H+ G +K + DW RPL L YA D +L I+ M L K++
Sbjct: 122 LVSHYLGHTLDKGARFTDWGRRPLDQRQLDYAIADVTHLAEIFPKMLEGL----KQTGRG 177
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
D L E +R D + Y E EN++ + + G NA+ L + L WR+ A+
Sbjct: 178 DW-LDEDMQRLTDP--KNYANE--PENAWQRV---KFPGRNAEALGRLKALAAWREREAQ 229
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
A D G ++ + TL ++A P L R+
Sbjct: 230 AKDLPRGRIVKDETLADLAGHPPKDQQALSRV 261
>gi|84393455|ref|ZP_00992211.1| ribonuclease D, partial [Vibrio splendidus 12B01]
gi|84375883|gb|EAP92774.1| ribonuclease D, partial [Vibrio splendidus 12B01]
Length = 313
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 123/261 (47%), Gaps = 16/261 (6%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ +VKDL+ + + + D +D E + R++ L+Q+ ++D + L
Sbjct: 28 YQIITQVKDLERVCQQAREADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIALD- 86
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
++ P++ + KD + KV+H D+ Q FG M DT + L ++
Sbjct: 87 EMTPFV-GLLKDTSVLKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFLGHGLSTGFAA 145
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD-IMKIKLSSMPKESEN 307
L+ F GV+ +K DW RPL + L YA D HYL+ +Y+ +++ + + E+
Sbjct: 146 LVSEFVGVDLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAAQ 205
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
++ L +V KR ++ +N+YL I G L QQLA++ L WR A
Sbjct: 206 QESDL-QVAKRI---------RKANPDNAYLDIKG--AWQLKPQQLAILRPLATWRLKEA 253
Query: 368 RADDESTGYVLPNRTLIEIAK 388
D + +V + L +A+
Sbjct: 254 IKRDLALNFVFKEQDLWAVAR 274
>gi|388599678|ref|ZP_10158074.1| ribonuclease D [Vibrio campbellii DS40M4]
Length = 372
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 130/300 (43%), Gaps = 15/300 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++++ KDL+E+ A + D +D E + R++ L+Q+ + ++D +L
Sbjct: 3 YQIIKKNKDLEEVCALAREADVVMLDTEFVRIRTYYPQLGLIQLFDGKQLSLIDPTELTD 62
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
E+ KD + KV+H D+ Q FG M DT + L ++
Sbjct: 63 MTS--FVELLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFAT 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ + GV +K DW RPL + L YA D HYL+ +Y+ + K+ +
Sbjct: 121 LVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKV---------N 171
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
+ E ++ D+ + + EN+YL I G L A +LA++ L WR A
Sbjct: 172 EAGWWEAVQQESDLLVSKRIRNVNEENAYLDIKG--AWQLRASELAILKPLATWRYREAI 229
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 428
D + ++ L+ +A+ L T K I R+ + I+K + Q A+
Sbjct: 230 KRDLALNFIFKEGDLLTVAR-LGLTGFKKMEAEGIDIRAINRHGAKIAGIVKQAKQTPAD 288
>gi|83593408|ref|YP_427160.1| ribonuclease D [Rhodospirillum rubrum ATCC 11170]
gi|386350145|ref|YP_006048393.1| ribonuclease D [Rhodospirillum rubrum F11]
gi|83576322|gb|ABC22873.1| Ribonuclease D [Rhodospirillum rubrum ATCC 11170]
gi|346718581|gb|AEO48596.1| ribonuclease D [Rhodospirillum rubrum F11]
Length = 386
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 120/283 (42%), Gaps = 14/283 (4%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ KDL + A+L + VD E + +++ CL+Q++ TE VD L + +
Sbjct: 3 LISTTKDLADFCARLSTESFVTVDTEFMREKTYWPKLCLIQLAGTTEAHCVDPLAPDIDM 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P L + + + KV H A +D+ + G +FDT A+ V + E L+
Sbjct: 63 AP-LFALMANESVLKVFHAARQDLEIFLHESGHLPKPIFDTQVAAMVCGFGDSVGYETLV 121
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
+K + DW RPL D L YA D +L +Y+ + L++ +
Sbjct: 122 AKLAKARIDKSMRFTDWARRPLNDRQLVYAAGDVTHLRVVYERLAETLAANGR------- 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
T + + + E++++ I + +A+ LA++ L WR+ A+
Sbjct: 175 --TAWLDQEMAILTDPAHYRVEPEDAWMRI---KARSRSARFLALLQELAAWRERTAQER 229
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 413
D V+ + L+EIA PTT L +L E MG
Sbjct: 230 DLPRNRVMRDEGLLEIAASAPTTPDALSQLRSVSKGMAEGTMG 272
>gi|386395739|ref|ZP_10080517.1| ribonuclease D [Bradyrhizobium sp. WSM1253]
gi|385736365|gb|EIG56561.1| ribonuclease D [Bradyrhizobium sp. WSM1253]
Length = 383
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 116/271 (42%), Gaps = 16/271 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ DL ++L VD E + ++ L C++Q+++ E V+DTL + +
Sbjct: 3 LITTTADLAAACSRLAKHPVITVDTEFLRETTYYPLLCVVQMASAEEAIVIDTLAAGIDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--L 249
P+ E+ + KV H A +DI + GI +FDT A+ VL +S+ Y L
Sbjct: 63 KPFF-ELMANEAVLKVFHAARQDIEIIWHQAGIIPHPVFDTQVAAMVLGYG-DSIAYDAL 120
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ G +K ++ DW RPL E + YA D +L ++ + L + S
Sbjct: 121 VEKVTGHRPDKTHRFTDWSRRPLTKEQMHYAVSDVTHLRDVFAALDADLKKRRRSEWVSI 180
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
++YD + E E L+ + LAV+ + WR+ A++
Sbjct: 181 EMEVLTSPKTYD-----FHPERAWER-------LKTRVRKPKDLAVLMEVAAWREQEAQS 228
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
D G VL + + +IA P T KL L
Sbjct: 229 RDVPRGRVLRDEAVSDIATHAPNTIEKLANL 259
>gi|145224502|ref|YP_001135180.1| 3'-5' exonuclease [Mycobacterium gilvum PYR-GCK]
gi|145216988|gb|ABP46392.1| 3'-5' exonuclease [Mycobacterium gilvum PYR-GCK]
Length = 424
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 12/198 (6%)
Query: 203 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 262
T + V+H AD+D+ L + G+ ++DT A R+ +R +L ++ G+ K +
Sbjct: 108 TDEWVLHAADQDLPCLA-EIGMRPTALYDTELAGRLANFDRVNLAAMVQRLLGLQLTKGH 166
Query: 263 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 322
ADW RPLPDE L YA D L + + + L K E ++ ++
Sbjct: 167 GAADWSKRPLPDEWLNYAALDVEVLTDLREAIAAVLDEQGK---------AEWARQEFEY 217
Query: 323 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 382
R +E + + G+ + + LA V L RD IAR D + G +LP+
Sbjct: 218 LRT-FEGSPTRRDRWRRTSGIHKVR-DPRALAAVRELWTTRDQIARRRDIAPGRILPDSA 275
Query: 383 LIEIAKQLPTTAAKLRRL 400
+I A P T KL L
Sbjct: 276 IISAATANPDTIEKLTAL 293
>gi|49474343|ref|YP_032385.1| ribonuclease D [Bartonella quintana str. Toulouse]
gi|49239847|emb|CAF26240.1| Ribonuclease D [Bartonella quintana str. Toulouse]
Length = 404
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 120/272 (44%), Gaps = 14/272 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+L+ + DL+ A L+ D VD E + +F CL+Q+++ ++D + +
Sbjct: 22 MRLITQTTDLEIALAALRPSDFVTVDTEFIRETTFWPQLCLIQLASPDVTMLIDPMAQDM 81
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEY 248
+ P+ ++ D KV H A +DI + G+ +FDT A + + S +
Sbjct: 82 DLKPFF-DLMVDEKIVKVFHAARQDIEIIYHLGGVIPYPLFDTQIAGSICGFGDSISYDQ 140
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
++ G +K + DW RPL ++ L YA D YL +Y ++K +L +
Sbjct: 141 IVQRCTGHQLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRMHWMD 200
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
D T ++YD+ EN ++G ++ AV+ + WR+ AR
Sbjct: 201 DEITTLSTPKTYDI----------PENEAWK--KVKGKIKKPREFAVLQKIAAWREREAR 248
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ +++ + LIEIA Q P + L RL
Sbjct: 249 RYNVPRRHIMKDECLIEIAIQQPKDESALNRL 280
>gi|296117768|ref|ZP_06836352.1| putative ribonuclease D [Corynebacterium ammoniagenes DSM 20306]
gi|295969499|gb|EFG82740.1| putative ribonuclease D [Corynebacterium ammoniagenes DSM 20306]
Length = 411
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 24/204 (11%)
Query: 204 KKKVMHGADRDIV---WLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 260
+K V+H A D+ WL G+Y ++FDT A R+L ++ +L + F G+ +K
Sbjct: 87 EKWVVHAAVTDLTSLAWL----GLYPGSLFDTEVAGRLLGIQNPNLASVTEEFLGIELDK 142
Query: 261 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSY 320
Y DW PL L YA D LL + D M +L K +E + + K+
Sbjct: 143 GYGATDWSRFPLSKAQLIYAALDVDTLLELADEMAYELEQEDK-TEWAQEEFAVIVKQFA 201
Query: 321 DVC----RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
++ R YE S IY Q LAV L + R+ A D + G
Sbjct: 202 NISAPAPRHWYES-----RSLRGIY-------EPQSLAVAKALWQEREKEALDSDIAPGQ 249
Query: 377 VLPNRTLIEIAKQLPTTAAKLRRL 400
+L N TL+E+AK++P + +LRR+
Sbjct: 250 ILSNTTLVELAKRIPRSVNQLRRI 273
>gi|257056403|ref|YP_003134235.1| ribonuclease D [Saccharomonospora viridis DSM 43017]
gi|256586275|gb|ACU97408.1| ribonuclease D [Saccharomonospora viridis DSM 43017]
Length = 413
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 111/250 (44%), Gaps = 16/250 (6%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+QI F++D + LR P L EV + V+H
Sbjct: 50 LAVDTERASGYRYWPKAYLIQIRREGAGTFLIDPIPLRDHFTP-LAEVMNQ--VEWVLHA 106
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
A +D+ L + G++ ++FDT A R+ +R +L L+ G K + ADW R
Sbjct: 107 ASQDLPCLA-ELGLHPPSLFDTELAGRLAGYQRVALGTLVESLLGYQLEKGHSAADWSRR 165
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLP + L YA D LL + + ++ +L++ K E ++ ++ R
Sbjct: 166 PLPLDWLNYAALDVELLLPLREKLEEELAASGK---------LEWARQEFEAVRTAKPPA 216
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+E + G+ A+ LA V L E RD +AR D + G +LP+ +I
Sbjct: 217 PRAE-PWRRTSGIHKVR-TARGLAAVRALWEARDELARRRDRAPGRILPDSAIINAVLAD 274
Query: 391 PTTAAKLRRL 400
T+A L +L
Sbjct: 275 ARTSADLEKL 284
>gi|256375684|ref|YP_003099344.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827]
gi|255919987|gb|ACU35498.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827]
Length = 414
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 93/220 (42%), Gaps = 20/220 (9%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A +D+ L + G+ +FDT A R+ ER +L L+ G K + AD
Sbjct: 103 VLHAASQDLPCLA-ELGLTPSALFDTELAGRLAGFERVALGTLVELLLGYRLEKGHGAAD 161
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP + L YA D L+ + D+++ +L K E +D R
Sbjct: 162 WSRRPLPADWLNYAALDVELLVQLRDVLEEELRQQGK---------LEWALEEFDAARTA 212
Query: 327 ----YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 382
E S +H + +QLA V L E RD +AR D + G VLP+
Sbjct: 213 PLPKPRAEPWRRTSGIHRI------RSTRQLAAVRSLWETRDALARERDLAPGRVLPDSA 266
Query: 383 LIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
L++ A + P A L L + R G + ++ +
Sbjct: 267 LVDAATRNPADEAALLALPVFRGRAQRRMAGTWMGALRKA 306
>gi|300024345|ref|YP_003756956.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888]
gi|299526166|gb|ADJ24635.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888]
Length = 384
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 115/269 (42%), Gaps = 24/269 (8%)
Query: 138 DLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLRE 197
+L L L D AVD E + ++F L CL+Q++ + +VD L + + P+
Sbjct: 9 ELAALCETLSRSDYVAVDTEFLREQTFWPLLCLIQLAGPEAEAIVDPLAPGLDLAPFY-H 67
Query: 198 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCG 255
+ D + KV H A +DI + G+ +FD+ A+ V +S+ Y L+ G
Sbjct: 68 LMADTSTVKVFHAARQDIEIVFLKSGVVPTPVFDSQVAAMVCGFG-DSISYVNLVKKTTG 126
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 315
+ +K + DW RPL + L YA D YL +Y ++ L + +
Sbjct: 127 ADLDKSSRFTDWSRRPLSPKQLDYALADVTYLRDVYQRLRQTLDKTGRTPWLQEEMGVLT 186
Query: 316 YKRSYDVCRQLYEKELLSENSY----LHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 371
+YD EN++ L + G + G V+ L WR+ +A+ D
Sbjct: 187 SPATYDTS---------PENAWQRLRLRVKGRKSLG-------VLVELAAWRERLAQQLD 230
Query: 372 ESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
G VL + L +IA Q+P L +L
Sbjct: 231 VPRGRVLRDDALYDIANQIPVNVEALGQL 259
>gi|315444833|ref|YP_004077712.1| ribonuclease D [Mycobacterium gilvum Spyr1]
gi|315263136|gb|ADT99877.1| ribonuclease D [Mycobacterium gilvum Spyr1]
Length = 424
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 12/198 (6%)
Query: 203 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 262
T + V+H AD+D+ L + G+ ++DT A R+ +R +L ++ G+ K +
Sbjct: 108 TDEWVLHAADQDLPCLA-EIGMRPTALYDTELAGRLANFDRVNLAAMVQRLLGLQLTKGH 166
Query: 263 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 322
ADW RPLPDE L YA D L + + + L K E ++ ++
Sbjct: 167 GAADWSKRPLPDEWLNYAALDVEVLTDLREAIAAILDEQGK---------AEWARQEFEY 217
Query: 323 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 382
R +E + + G+ + + LA V L RD IAR D + G +LP+
Sbjct: 218 LRT-FEGSPTRRDRWRRTSGIHKVR-DPRALAAVRELWTTRDQIARRRDIAPGRILPDSA 275
Query: 383 LIEIAKQLPTTAAKLRRL 400
+I A P T KL L
Sbjct: 276 IISAATANPDTIEKLTAL 293
>gi|56697032|ref|YP_167394.1| ribonuclease D [Ruegeria pomeroyi DSS-3]
gi|56678769|gb|AAV95435.1| ribonuclease D [Ruegeria pomeroyi DSS-3]
Length = 385
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 123/273 (45%), Gaps = 24/273 (8%)
Query: 141 ELAAKLKSVDEFA---VDLEHNQYRSFLGLTCLMQISTRTED----FVVDTLKLRVQVGP 193
ELAA K+ A VD E + R++ CL+Q++ ED +VD L +++ P
Sbjct: 9 ELAAFCKAAASHAYVTVDTEFLRERTYYSKLCLIQLAYPGEDADSAVLVDPLAEGLELEP 68
Query: 194 YLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHH 252
L +F+D + KV H A +D+ D G++ +FDT A+ V E+ E L+
Sbjct: 69 -LYTLFRDTSVVKVFHAARQDLEIFWVDAGVFPEPLFDTQVAAMVCGFGEQVGYETLVRK 127
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPL 312
C +K + DW RPL D YA D +L IY+ + L+ + ++
Sbjct: 128 ICRQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLAADLAKTGRSHWVAEELR 187
Query: 313 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 372
T +YD+ E ++ I +G + LAVV L ++R+ A+ ++
Sbjct: 188 TLTDPATYDI---------RPEEAWRRIKTRTNSG---KFLAVVRELAQFRESYAQDNNV 235
Query: 373 STGYVLPNRTLIEIAKQLPTTAAKL---RRLLK 402
V + LIE+A P T A L R LL+
Sbjct: 236 PRNRVFKDDALIELASTKPRTHADLGGSRLLLR 268
>gi|363420406|ref|ZP_09308498.1| ribonuclease D [Rhodococcus pyridinivorans AK37]
gi|359735648|gb|EHK84605.1| ribonuclease D [Rhodococcus pyridinivorans AK37]
Length = 417
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 123/276 (44%), Gaps = 25/276 (9%)
Query: 131 KLVEEVKDLKELAAKL-KSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVV-DTLKLR 188
K+V + + + AA L + AVD E + G L+Q+ V+ D + R
Sbjct: 29 KVVTTARGVADAAAMLAQGHGPLAVDAERASGYRYSGRAYLVQLRRDGAGTVLLDPIPTR 88
Query: 189 VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
+ P L EV D + V+H AD+D+ L + G+ ++DT A R+ R L
Sbjct: 89 DDLAP-LTEVIND--LEWVLHSADQDLPGLA-ELGLRPAKLYDTELAGRLAGFPRVGLAA 144
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
++ G+ K + ADW RPLPD L YA D L+ + D M +L E +N
Sbjct: 145 IVAETLGLELRKGHGAADWSTRPLPDSWLNYAALDVEPLVELRDAMAREL-----ERQNK 199
Query: 309 DTPLTEVYKRSYDVCR----QLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
TE + ++ R + + S +H A + ++LA+V L RD
Sbjct: 200 ----TEWAAQEFEHIRLAGPPAPKPDRWRRTSKIH------AIKDRRRLAIVRELWTTRD 249
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
IA D + G +LP+ +I A+ PT+ +L+ L
Sbjct: 250 EIAARRDIAPGRILPDSAIIAAAEANPTSVEQLQEL 285
>gi|16125948|ref|NP_420512.1| ribonuclease D [Caulobacter crescentus CB15]
gi|221234713|ref|YP_002517149.1| ribonuclease D [Caulobacter crescentus NA1000]
gi|13423116|gb|AAK23680.1| ribonuclease D [Caulobacter crescentus CB15]
gi|220963885|gb|ACL95241.1| ribonuclease D [Caulobacter crescentus NA1000]
Length = 389
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 134/310 (43%), Gaps = 20/310 (6%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
KL+ +L L AVD E + ++ CL+Q+++ T++ V+D L +
Sbjct: 1 MKLITTTAELAAFCNGLAGEPFVAVDTEFMRETTYWPKLCLIQVASPTQEAVIDPLADNI 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEY 248
+ P L V +D KV H A +D+ + + +FDT A E+ + +
Sbjct: 61 DLEPLL-VVMRDERILKVFHAARQDVE-IFNNLKAMPKPLFDTQVAGMAAGFGEQIAYDA 118
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES--E 306
L+ + +K + DW RPL D L YA D +L ++ I++ +L + + + E
Sbjct: 119 LVRQMLRIEIDKSSRFTDWARRPLTDAQLSYALADVTHLAKLFPILRERLETSGRLAWVE 178
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
T +++ +YDV E ++ + + A + LAV + WR+
Sbjct: 179 EEMTAISD--PAAYDVD---------PEKAWRRLRPRKTA---PKYLAVFKAVAAWRERT 224
Query: 367 ARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP-VLSIIKNSMQN 425
A+ D+ G +L + + E+A Q P L L + GP +L+ IK+++ +
Sbjct: 225 AQNRDQPRGRILKDEAIDELATQTPGNLEALNNLRGVPKGFGGSKFGPDLLAAIKDALAD 284
Query: 426 AANFEVIAQK 435
+ + K
Sbjct: 285 PEGYAPVVDK 294
>gi|409397310|ref|ZP_11248230.1| ribonuclease D [Pseudomonas sp. Chol1]
gi|409398328|ref|ZP_11249142.1| ribonuclease D [Pseudomonas sp. Chol1]
gi|409117258|gb|EKM93693.1| ribonuclease D [Pseudomonas sp. Chol1]
gi|409118194|gb|EKM94598.1| ribonuclease D [Pseudomonas sp. Chol1]
Length = 405
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 148/338 (43%), Gaps = 31/338 (9%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L L A+ + + A+D E + +F + L+QI +++D L ++ P+ +
Sbjct: 44 LARLCAEWRQLPFVALDTEFMRVDTFYPIAGLVQIGDGRCAYLIDPLTVK-DWQPFA-AL 101
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGV 256
+D KV+H D+ L R G +FDT A L L S+ Y L+H G+
Sbjct: 102 LQDTAVVKVLHACGEDLEVLSRLTGQLPAPLFDTQLAGGYLNLG-FSMGYSRLVHAVLGL 160
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
+ K+ +DW RPL + +RYA ED +L +Y + +P+ SE+ + E
Sbjct: 161 DLPKDETRSDWLQRPLSEMQMRYAAEDVQHLAELYAAL------LPRLSEDKRRWVVE-- 212
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
++ L ++E + +Y + Q L QQLAV+ L WR+ ARA ++
Sbjct: 213 -DGAELVANL-QRETDPDEAYREVK--QAWRLRPQQLAVLRVLTAWRERQARARNQPRNR 268
Query: 377 VLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKL 436
+L +L +A+ P L R ++ H R G L E+I Q
Sbjct: 269 ILREASLWPLARTQPKDLVALAR-IEDMHPRTVRQDGETL------------LELIRQAA 315
Query: 437 KEERMEVASEETEVLVLDTSSNL-KIPNVGRESVDGVD 473
E + E L L+ +S L K+ VG+ + + +D
Sbjct: 316 ALPAQEWPAALPEPLPLEAASVLKKLRAVGQRTANELD 353
>gi|241203984|ref|YP_002975080.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240857874|gb|ACS55541.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 381
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 121/270 (44%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E DL +L D +D E + +F CL+Q+++ + +VD L + +
Sbjct: 1 MIETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPRTEVLVDPLAKGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ E+ D KV H A +DI + + +FDT A+ V + S + L+
Sbjct: 61 APFF-ELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVCGFGDSVSYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
V+ +K + DW RPL D+ L YA D +L +Y +K +L + E +
Sbjct: 120 SRIKNVHIDKSSRFTDWSRRPLSDKQLDYALADVTHLRDVYLSLKAEL-----DREGRSS 174
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
L+E D+ ++ ++++ L+ Q+LA++ + WR+ ARA
Sbjct: 175 WLSE----EMDILESRETYDMHPDDAWQR---LKMRLRKPQELAILKYVAAWREREARAR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P L RL
Sbjct: 228 NVPRSRVLKDDAIYEIAQQQPKDTEALGRL 257
>gi|400974698|ref|ZP_10801929.1| ribonuclease [Salinibacterium sp. PAMC 21357]
Length = 418
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 132/302 (43%), Gaps = 33/302 (10%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDE----FAVDLEHNQYRSFLGLTCLMQISTR-TEDFV 181
Q P V + D E A + ++ E +D E + L+QI R F+
Sbjct: 18 QAPHAPVNVIDDRDEYLAAVAAIAEGHGPIGIDAERASGYRYSQRAYLIQIFRRGAGTFL 77
Query: 182 VDTLKLRVQVGPY--LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 239
D +G + L ++ D ++ ++H A +D+ L R+ G++ +FDT +R+
Sbjct: 78 FDP----PAIGDFVELNDLIAD--EEWILHAATQDLTCL-REVGLHPSRLFDTELGARLA 130
Query: 240 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
L R L ++ H G++ KE+ +ADW RPLP L YA D L+ + + + L
Sbjct: 131 GLPRVGLGTVVEHLLGIHLAKEHSSADWSTRPLPQAWLVYAALDVELLVDLREALGELLD 190
Query: 300 SMPKESENSDTPLTEVYKRSYD--VCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVA 357
S K ++ ++ +D + R L ++ L+G + LA+
Sbjct: 191 SADKH---------DIAQQEFDSVLSRDLSNVRAEPWRRLSGVHSLRG----GKNLAIAR 237
Query: 358 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL----KSKHSYIERYMG 413
L RD A+ D + G ++P+ L+ A+ LP + +L + ++ + I+R+
Sbjct: 238 ELWLARDAYAQEVDTAPGRLVPDSALLAAARFLPESKRQLSAMKEFSGRASRTQIDRWWD 297
Query: 414 PV 415
+
Sbjct: 298 AI 299
>gi|430376817|ref|ZP_19430950.1| 3'-5' exonuclease [Moraxella macacae 0408225]
gi|429539954|gb|ELA07983.1| 3'-5' exonuclease [Moraxella macacae 0408225]
Length = 408
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 130/290 (44%), Gaps = 44/290 (15%)
Query: 121 KPPS------LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIS 174
+PP+ L P ++ + L+ L +L ++D A+D E + +F L+QI+
Sbjct: 5 QPPTAHELQILNDLPTVWIKTDEQLERLLDELDTLDIIALDTEFIKRDTFFPRLALLQIN 64
Query: 175 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIY--------L 226
T T +++D KL + + + + PT V+H D+ GIY L
Sbjct: 65 TGTVIYLLDAPKL--DLYDFWQVIGDIPTM--VLHACGEDL-------GIYYLLSELPAL 113
Query: 227 CNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 284
N+FDT L E SL Y L + ++ NK +DW RPL E +YA +D
Sbjct: 114 TNVFDTQIGLGFLTGEL-SLGYQTALLNTLDIHVNKGESQSDWLKRPLTFEQEQYASDDV 172
Query: 285 HYLLYIYDIMKIKLSSMPKES---ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIY 341
YLL +Y+ +K +L+ ++ TE+Y S QLY
Sbjct: 173 RYLLALYNALKQQLNQQNLWQYAKQDCQDYSTELYNLSQITDDQLY-------------L 219
Query: 342 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 391
+ N +QLA++ LCEWR+ +AR+ + Y+L + L E+ ++ P
Sbjct: 220 NVANFNYNREQLAILQALCEWREQLARSINRPRTYILRPKALQELVEKPP 269
>gi|395787746|ref|ZP_10467338.1| ribonuclease D [Bartonella birtlesii LL-WM9]
gi|395410368|gb|EJF76923.1| ribonuclease D [Bartonella birtlesii LL-WM9]
Length = 420
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 119/270 (44%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + DL+ A L++ D VD E + +F CL+Q+++ ++D + + +
Sbjct: 40 LITKTTDLETALAILRTSDFVTVDTEFIRETTFWPQLCLIQLASPHTTVLIDPMSQEIDL 99
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ ++ D KV H A +DI + G+ +FDT A + + S + ++
Sbjct: 100 QPFF-DLMLDKKIVKVFHAARQDIETIYHLGGVIPSPLFDTQIAGSICGFGDSISYDQIV 158
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G +K + DW RPL ++ L YA D YL +Y ++K +L + D
Sbjct: 159 QRCTGHKLDKSSRFTDWSCRPLSEKQLLYALADVTYLREVYLLLKKQLEKNKRTHWMDDE 218
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ ++YD + E E + G ++LA++ + WR+ AR
Sbjct: 219 IAILLSPKTYD----MPEDEAWKKVK--------GKVKKQRELAILQKIAAWRERKARKY 266
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ +++ + LIEIA Q P L+ L
Sbjct: 267 NIPRRHIMKDECLIEIATQQPKDETALKHL 296
>gi|56460926|ref|YP_156207.1| ribonuclease D [Idiomarina loihiensis L2TR]
gi|56179936|gb|AAV82658.1| Ribonuclease D [Idiomarina loihiensis L2TR]
Length = 390
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 133/287 (46%), Gaps = 28/287 (9%)
Query: 122 PPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFV 181
P S++Q ++LV DL++L + FA+D E + R++ L+QI V
Sbjct: 8 PESVQQ--YRLVTTTDDLQDLCQQAVKCGWFAIDSEFVRERTYYAQLGLLQIHANGTTAV 65
Query: 182 VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDI-VWLQRDFGIYLCNMFDTGQASRVLK 240
+D L + + P + + D + V+H DI ++ Q+ G +FD+ A+
Sbjct: 66 IDPLA-DIDLEPLWQLISGDEVET-VLHAGGEDIELFFQQSSGRQPKQIFDSQIAAGFCG 123
Query: 241 LERNSLEY---LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 297
L +S+ Y + F GV +K +W RPL DE L YA D YL +Y +K
Sbjct: 124 LG-DSMGYARLVDALFDGVELDKSLSRTNWLKRPLSDEQLDYAAADASYLAIMYPYLK-- 180
Query: 298 LSSMPKESENSDTPLTEVYKRSYDVCR---QLYEKELLSENSYLHIYGLQGAG-LNAQQL 353
++ +E D VY+ S R Q + +LL YL G+ A LN +QL
Sbjct: 181 --ALCEEKGVLDI----VYEESQIQVRKRTQSWPDDLL----YL---GVGNAWQLNPRQL 227
Query: 354 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
A + L WR AR D G++ + L+E+A+++P +L R+
Sbjct: 228 AALKILTPWRLHKARERDIPLGFIAKDGVLLELARRMPKNDDELSRI 274
>gi|257454439|ref|ZP_05619701.1| 3'-5' exonuclease [Enhydrobacter aerosaccus SK60]
gi|257448205|gb|EEV23186.1| 3'-5' exonuclease [Enhydrobacter aerosaccus SK60]
Length = 403
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 143/320 (44%), Gaps = 50/320 (15%)
Query: 120 VKPPSLEQT---PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTR 176
+ P L+Q P V+ L L L+ VD A+D E + +F + L+QI+T
Sbjct: 7 LSPAQLQQLHDLPIHWVKTQDALFALLDDLEQVDTIALDTEFIKRDTFFPILALIQINTG 66
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKD-PTKKKVMHGADRDIVWLQRDFGIY--------LC 227
+++D KL ++ EV D PT V+H D+ GIY L
Sbjct: 67 KAIYLIDAPKLYLE---EFWEVLADIPTV--VLHACGEDL-------GIYYLLSNLPALR 114
Query: 228 NMFDTGQASRVLKLERNSLEYL--LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTH 285
N+FDT L E NSL Y L V+ +K +DW RPL E YA +D
Sbjct: 115 NVFDTQIGLGFLTGE-NSLGYQKSLQETIAVHVDKGESQSDWLQRPLTPEQESYAVDDVR 173
Query: 286 YLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLH 339
YLL ++ +K +L +++ + + C Q Y +E+ + + YL
Sbjct: 174 YLLPMFVAIKTQLIEQ------------GLWQYAVEDC-QSYTQEIFANFTTPDNALYLS 220
Query: 340 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 399
+ + N +QLA++ LCEWR+ +A++ + ++L + L EI ++ P + +L
Sbjct: 221 VADYRD---NREQLAMLQTLCEWREQLAKSINRPRTFILRPQALREIIEKPPFSMKQL-S 276
Query: 400 LLKSKHSYIERYMGPVLSII 419
K + I Y +L++I
Sbjct: 277 FTSIKPNVIRMYGQEILTLI 296
>gi|269468831|gb|EEZ80435.1| ribonuclease D [uncultured SUP05 cluster bacterium]
Length = 345
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 24/259 (9%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
+++ L++ +K E A+D E + ++ + CL+QI+T+ +D L L +
Sbjct: 1 MIQTPTQLRDFLHSIKDETELAIDTEFKRVNTYYPVLCLVQIATKKNTDCIDVLTLD-DL 59
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLC-----NMFDTGQASRVLKL-ERNS 245
P ++++D ++H A +DI L YL +FDT A+ ++ + S
Sbjct: 60 SPLFDKLYQDDCLW-IVHSARQDIEALH-----YLSKQLPKQLFDTQIAASLVNYPAQIS 113
Query: 246 LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES 305
+ L V+ K Y DW +RPLPDE + YA +D YLL Y +K +L E
Sbjct: 114 YQALTESLQNVHLEKAYTRLDWTIRPLPDEAIEYALDDVRYLLKNYRQLKTQL-----EV 168
Query: 306 ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
E T + E K D+ LY ++ ++++ + G Q A A L WR+
Sbjct: 169 EEKSTWIEEEGKSLLDI--NLYNPDI--KDAWQRVKGFSRLAKKYQLKA--AQLSAWREY 222
Query: 366 IARADDESTGYVLPNRTLI 384
A+ ++ ++L + LI
Sbjct: 223 QAKKKNKPRKWILSDDKLI 241
>gi|108799177|ref|YP_639374.1| 3'-5' exonuclease [Mycobacterium sp. MCS]
gi|119868292|ref|YP_938244.1| 3'-5' exonuclease [Mycobacterium sp. KMS]
gi|126434785|ref|YP_001070476.1| 3'-5' exonuclease [Mycobacterium sp. JLS]
gi|108769596|gb|ABG08318.1| 3'-5' exonuclease [Mycobacterium sp. MCS]
gi|119694381|gb|ABL91454.1| 3'-5' exonuclease [Mycobacterium sp. KMS]
gi|126234585|gb|ABN97985.1| 3'-5' exonuclease [Mycobacterium sp. JLS]
Length = 428
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 12/198 (6%)
Query: 203 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 262
T + V+H AD+D+ L + G+ ++DT A R+ L R +L ++ G+ K +
Sbjct: 113 TDEWVLHAADQDLPCLA-ELGMRPPKLYDTELAGRLAGLARVNLATMVSELLGLQLMKGH 171
Query: 263 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 322
ADW RPLPD+ L YA D LL + D + L K T+ + ++
Sbjct: 172 GAADWSKRPLPDDWLNYAALDVEVLLELRDAVAAVLDDQGK---------TDWAIQEFEH 222
Query: 323 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 382
R YE + + G+ N + LA V L RD IAR D + G +LP+
Sbjct: 223 LRT-YEAAPTRRDRWRRTSGIHKVR-NPRALAAVRELWTTRDHIARRRDIAPGRILPDAA 280
Query: 383 LIEIAKQLPTTAAKLRRL 400
+I A P + KL L
Sbjct: 281 IINAATADPDSVEKLTAL 298
>gi|257063921|ref|YP_003143593.1| ribonuclease D [Slackia heliotrinireducens DSM 20476]
gi|256791574|gb|ACV22244.1| ribonuclease D [Slackia heliotrinireducens DSM 20476]
Length = 392
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 112/248 (45%), Gaps = 16/248 (6%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
A+D E + +++ CL+Q++T VD L+L L +F+D K+ H +
Sbjct: 21 LAIDTEFMREKTYWPKLCLIQLATPERAVAVDPLRLHDLSA--LNVLFQDENILKLFHAS 78
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRV 269
+D+ + + G +FDT A+ +L + Y L+ + GV+ K DW
Sbjct: 79 RQDLEIINIEMGCLPAPIFDTQIAAALLG-HTTQIGYGPLVMNELGVHLKKADSYTDWSR 137
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
RPL L+YA +D YL +YD M KL + N L ++ D YEK
Sbjct: 138 RPLTKSQLQYALDDVIYLPKLYDSMSRKLKKL-----NRMDWLASDFRDLSDPSN--YEK 190
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
E +LH+ + LN QQLA + WR+ A + +VL + L+EI K+
Sbjct: 191 P--PEERFLHLKRVN--QLNQQQLACARNVAAWRERKAMKRNIPRKWVLTDEQLVEICKR 246
Query: 390 LPTTAAKL 397
P + +L
Sbjct: 247 EPQSIDEL 254
>gi|325672651|ref|ZP_08152347.1| ribonuclease III [Rhodococcus equi ATCC 33707]
gi|325556528|gb|EGD26194.1| ribonuclease III [Rhodococcus equi ATCC 33707]
Length = 413
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 117/275 (42%), Gaps = 25/275 (9%)
Query: 132 LVEEVKDLKELAAKLKS-VDEFAVDLEHNQYRSFLGLTCLMQIS-TRTEDFVVDTLKLRV 189
++E +++ A +L + AVD E + L+Q+ F++D +
Sbjct: 23 VIETAAGVRDAAERLAAGTGPLAVDAERASGFRYSSRAYLVQLRRAGAGSFLLDPIPTAE 82
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
+ P LR+ + V+H AD+D+ L + G+ +FDT A R+ ER L +
Sbjct: 83 DLEP-LRDAING--LEWVLHSADQDLPCLA-ELGLEPAALFDTELAGRLAGFERVGLAAI 138
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ G+ K + ADW RPLPD L YA D LL + + M +L++ K
Sbjct: 139 VERTLGLELRKGHGAADWSTRPLPDAWLNYAALDVEVLLELREAMATELAAQGK------ 192
Query: 310 TPLTEVYKRSYDVCRQL----YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
TE + ++ R + + S +H + +QLA V L RD
Sbjct: 193 ---TEWAAQEFEHVRLAGPPQPKPDRWRRTSQIHSLK------SPRQLAAVRELWTTRDE 243
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
IAR D S +LP+ ++ A P + LR L
Sbjct: 244 IARKRDISPSRILPDSAIVTAASADPKSIDTLRAL 278
>gi|374299652|ref|YP_005051291.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay]
gi|332552588|gb|EGJ49632.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay]
Length = 409
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 137/326 (42%), Gaps = 26/326 (7%)
Query: 107 LDFVDKDIGDVEAVKP--PSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSF 164
+D D G E P P + + LV+ + L EL ++L+ D +D E + R++
Sbjct: 1 MDRGDMSAGGYEGPAPELPGVVDSEAILVQSAEALGELCSRLRGCDAVGMDTEFVRSRTY 60
Query: 165 LGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGI 224
L+Q+ F+VD L + + P L E+ DP K+ H D+ L
Sbjct: 61 FPTLGLIQLVADGGVFLVDPLGVD-DLSP-LVEILADPRLIKIFHSCQEDLEAL-----Y 113
Query: 225 YLCN-----MFDTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLR 278
YLC +FDT A+ L + L+ GV +K+ ++W RPL + L
Sbjct: 114 YLCGFAPGPVFDTQVAASFLGYGFQPGYGSLVKALFGVELDKDETRSNWIKRPLSESQLI 173
Query: 279 YAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYL 338
YA +D YL +Y I+ L+ + S + + ++ Y YL
Sbjct: 174 YAAQDVRYLPAMYSILGQALTEQGRLSWAREECAALEGEARFETDAACY---------YL 224
Query: 339 HIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 398
+ L + ++LA + L WR+ A + D +VL +++L + + P A L
Sbjct: 225 RMRSLW--QFDRRELAALRDLSAWREHEAMSRDLPRSFVLDDKSLRAVVRDWPGKLADLA 282
Query: 399 RLLKSKHSYIERYMGPVLSIIKNSMQ 424
+ + + R +L++++ + Q
Sbjct: 283 AVEGMRPQVVRRSGKVILAMLRQARQ 308
>gi|312113633|ref|YP_004011229.1| ribonuclease D [Rhodomicrobium vannielii ATCC 17100]
gi|311218762|gb|ADP70130.1| ribonuclease D [Rhodomicrobium vannielii ATCC 17100]
Length = 404
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 120/283 (42%), Gaps = 21/283 (7%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++ + DLK L L VD E + ++ CL+Q++ + VVD L + +
Sbjct: 28 VITSITDLKTLCDALAGQPYVTVDTEFMRQTTYRPKLCLIQMAAPGIEAVVDPLP-NLDL 86
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--L 249
P+ + + KV H A +DI + ++ G+ +FDT A+ L +++ Y L
Sbjct: 87 SPFY-ALMANTAVVKVFHAARQDIEIVWQEAGVIPMPLFDTQIAAMALG-HGDAISYGAL 144
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES--EN 307
+ N +K YQ DW RPL + L YA D YL +Y +K +L +E E
Sbjct: 145 VKKLLKKNHDKTYQAIDWCQRPLGPKQLEYALGDVTYLRDVYAKLKQRLEQTGREPWLEE 204
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
LT+ ++D +L G + +++ L WR+ A
Sbjct: 205 EVAVLTDPKTYAFDPADAWKRLKL--------------GGKSRTARSIIMELAAWRERAA 250
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 410
+ ++ G VL + + E+AK P T L RL + S R
Sbjct: 251 QDENVPRGRVLKDEAIYEVAKHAPRTLETLSRLRSVRDSVRSR 293
>gi|27379246|ref|NP_770775.1| ribonuclease D [Bradyrhizobium japonicum USDA 110]
gi|27352397|dbj|BAC49400.1| ribonuclease D [Bradyrhizobium japonicum USDA 110]
Length = 382
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 116/271 (42%), Gaps = 16/271 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ DL ++L VD E + ++ L C++Q+++ E V+DTL + + +
Sbjct: 3 LITTTADLAAACSRLAKHPVITVDTEFLRETTYYPLLCVVQMASPEEAIVIDTLAVGIDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--L 249
P+ E+ + KV H A +DI + I +FDT A+ VL +S+ Y L
Sbjct: 63 KPFF-ELMGNEAVLKVFHAARQDIEIIWHQANIIPHPVFDTQVAAMVLGYG-DSIAYDQL 120
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ G +K ++ DW RPL E + YA D +L ++ + L + S
Sbjct: 121 VEKVTGHRPDKTHRFTDWSRRPLTKEQMHYAVSDVTHLRDVFAALDADLKKRRRSEWVSI 180
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
R+YD + E E L+ + LAV+ + WR+ A++
Sbjct: 181 EMEVLTSPRTYD-----FHPERAWER-------LKTRVRKPKDLAVLMEVAAWREQEAQS 228
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
D G VL + + +IA P T KL L
Sbjct: 229 RDVPRGRVLRDEAVSDIATHAPNTLEKLAHL 259
>gi|86357133|ref|YP_469025.1| RNase D protein [Rhizobium etli CFN 42]
gi|86281235|gb|ABC90298.1| RNase D protein [Rhizobium etli CFN 42]
Length = 381
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 122/271 (45%), Gaps = 16/271 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E DL +L D +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTMEVLVDPLAKGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ E+ D KV H A +DI + + +FDT A+ V + S + L+
Sbjct: 61 APFF-ELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVCGFGDSVSYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS-MPKESENSD 309
V+ +K + DW RPL ++ L YA D +L +Y + LSS + +E S
Sbjct: 120 SRIKNVHIDKSSRFTDWSRRPLSEKQLEYALADVTHLRDVY----LSLSSQLDREGRTS- 174
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
+ D+ ++ ++++ L+ Q+LAV+ + WR+ ARA
Sbjct: 175 -----WLREEMDILEARETYDMHPDDAWQR---LKMRLRKPQELAVLKYVAAWREREARA 226
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + E+A+Q P + L RL
Sbjct: 227 RNVPRSRVLKDDAIYEVAQQQPRDSEALGRL 257
>gi|391232023|ref|ZP_10268229.1| ribonuclease D [Opitutaceae bacterium TAV1]
gi|391221684|gb|EIQ00105.1| ribonuclease D [Opitutaceae bacterium TAV1]
Length = 375
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 9/181 (4%)
Query: 121 KPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDF 180
+PPS F+L+++ L L A + VDE A+D E + + CL+Q + +
Sbjct: 9 RPPS-----FQLIDQPAQLAPLLAAIDRVDEVALDTEADNMYHYHTRVCLLQFLVDGDVY 63
Query: 181 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 240
+VD + + K K VMHG+D D+ L ++FDT A+++L
Sbjct: 64 LVDLMPPLPLAPLW----EKLSKKHLVMHGSDFDLRLLHDLCEFRPKSLFDTMLAAQLLN 119
Query: 241 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300
+R L LL GV +K Q A+W RPL ++L YA D +L + DI+ +L+
Sbjct: 120 RKRIGLAALLSDHFGVTLDKGGQKANWSRRPLTAKLLDYASLDVWHLFELRDILTRELAR 179
Query: 301 M 301
+
Sbjct: 180 L 180
>gi|291436577|ref|ZP_06575967.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672]
gi|291339472|gb|EFE66428.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672]
Length = 432
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 118 VLHAATQDLPCL-REIGMLPTRLFDTELAGRLAGFPRVGLGAMVENVLGYVLEKGHSAVD 176
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP+ LRYA D L+ + + ++ +L K E ++ +D
Sbjct: 177 WSTRPLPEPWLRYAALDVELLVDLRNALEKELDRQGK---------LEWARQEFDAIASA 227
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
E ++ + G+ +Q+AVV L + RD IAR D S G VLP+ ++E
Sbjct: 228 PPPE-PRKDPWRRTSGMHKV-RRRRQMAVVRELWQTRDRIARRRDLSPGKVLPDAAIVEA 285
Query: 387 AKQLPTTAAKLRRL 400
A LP A L L
Sbjct: 286 ALALPADARALAAL 299
>gi|417840732|ref|ZP_12486840.1| Ribonuclease D [Haemophilus haemolyticus M19501]
gi|341950543|gb|EGT77130.1| Ribonuclease D [Haemophilus haemolyticus M19501]
Length = 382
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 125/272 (45%), Gaps = 18/272 (6%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
F+++ + L E+ + A+D E + ++ L+Q+ ++D L +
Sbjct: 11 FRVIADNAALLEVCNLAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLAI-T 69
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
P++ + +P KV+H D++ ++F C M DT +R L L ++ L
Sbjct: 70 DFSPFI-ALLANPKVLKVLHSCSEDLLVFLQEFDQLPCPMIDTQIMARFLGLGTSAGLAK 128
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES--- 305
L + V +K +W RPL D L+YA D YLL +Y I++ +L+ P E
Sbjct: 129 LAQQYLNVEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVR 188
Query: 306 ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
++ + L + +K L E++ SE +YL I LN +L+ + L +WR
Sbjct: 189 DDCELILAKTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAQWRQN 236
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
+A D + Y++ + L ++AK P +++
Sbjct: 237 VAIERDLALSYIVKSEHLWKVAKNNPRNTSEM 268
>gi|402819435|ref|ZP_10869003.1| hypothetical protein IMCC14465_02370 [alpha proteobacterium
IMCC14465]
gi|402511582|gb|EJW21843.1| hypothetical protein IMCC14465_02370 [alpha proteobacterium
IMCC14465]
Length = 383
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 120/278 (43%), Gaps = 14/278 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ +L + A+ ++ +D E + ++F CL+QI+ + ++D L + +
Sbjct: 3 LLTTTSELNQACARFETSRYVTIDTEFLREKTFWPQLCLVQIAMPDFEVLIDPLAENIDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
L E+ K+ KVMHG +DI ++ GI + DT + V + S E L+
Sbjct: 63 SA-LFEILKNQNIIKVMHGCRQDIEIFHKEAGIIPTPLMDTQVMAMVCGYGDSISYEALV 121
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
+K + DW RPL D+ L YA D YL I++ ++ +L++ + S+
Sbjct: 122 KRIPQGTIDKGSRFTDWSRRPLNDDQLTYALADVTYLRDIFENLENELATTGRLEWLSEE 181
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+Y+ ++ K L ++ HI G V+ L +WR++ A+
Sbjct: 182 MDILTNPETYNQSPEIAWKRLKFQDKRPHIMG------------VIIELAKWREIQAQTR 229
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 408
D +L + + EIA Q P R+ +I
Sbjct: 230 DVPRNRILKDDAIREIALQNPKKPEDFDRMRSVPRGFI 267
>gi|289706235|ref|ZP_06502598.1| putative ribonuclease D [Micrococcus luteus SK58]
gi|289557074|gb|EFD50402.1| putative ribonuclease D [Micrococcus luteus SK58]
Length = 416
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 12/231 (5%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
++H A +D+ L + G+ +FDT A+RV L R L +L GV KE+ AD
Sbjct: 100 ILHAASQDLPCLA-EQGLRPDRLFDTELAARVAGLPRVGLAAVLEELLGVTLAKEHSAAD 158
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W VRPLP+ ML YA D L+ + + + +L +D L + V +
Sbjct: 159 WSVRPLPEAMLAYAALDVELLVPLREALIARL--------EADGKLAWAEQEFEHV--RT 208
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
++ + G Q Q+ AV+ L E R+ +AR D + G ++P+R+++
Sbjct: 209 APPPAPKKHPWRGTSGSQTLRRPVQR-AVLKRLWEAREDLARHRDVAPGRLIPDRSIVAA 267
Query: 387 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLK 437
A LP T LR+ R ++ I+ +++A + A +++
Sbjct: 268 AAALPRTVPALRQTSGFHGRAASREAPRWIAAIRAGVEDAERGDAPAAQIR 318
>gi|256395899|ref|YP_003117463.1| 3'-5' exonuclease [Catenulispora acidiphila DSM 44928]
gi|256362125|gb|ACU75622.1| 3'-5' exonuclease [Catenulispora acidiphila DSM 44928]
Length = 443
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 20/202 (9%)
Query: 207 VMHGADRDIVWLQRDFGIY--------LCNMFDTGQASRVLKLERNSLEYLLHHFCGVNA 258
V+H A +D+ L + G++ +FDT +R+ ER L L+ +
Sbjct: 115 VLHAASQDLACLA-EVGMHPPARRPDGTGGLFDTELGARLGGHERVGLGPLVAEVLKLEL 173
Query: 259 NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKR 318
K + +DW RPLP+ LRYA D L+ + DI++ +L K + ++
Sbjct: 174 EKGHSASDWSTRPLPEAWLRYAALDVEVLVEVRDIIEDELRGAGK---------LDWARQ 224
Query: 319 SYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVL 378
+D + +E + GL +QLAVV L E RD +AR D + VL
Sbjct: 225 EFDAVASAPPPKPRAE-PWRRTSGLHKV-RRPRQLAVVRALWESRDELARRRDMTPTRVL 282
Query: 379 PNRTLIEIAKQLPTTAAKLRRL 400
P++ +I+ A LP TAA++R +
Sbjct: 283 PDQAIIDSALSLPGTAAQMRTI 304
>gi|313140484|ref|ZP_07802677.1| ribonuclease D [Bifidobacterium bifidum NCIMB 41171]
gi|421735613|ref|ZP_16174522.1| ribonuclease D [Bifidobacterium bifidum IPLA 20015]
gi|313132994|gb|EFR50611.1| ribonuclease D [Bifidobacterium bifidum NCIMB 41171]
gi|407297096|gb|EKF16569.1| ribonuclease D [Bifidobacterium bifidum IPLA 20015]
Length = 428
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 83/180 (46%), Gaps = 8/180 (4%)
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
D G+ +FDT A+R+L L R L + H+ GV KE+ ADW RPLP + YA
Sbjct: 108 DIGLTPQALFDTEIAARMLGLHRFGLAAVTEHYLGVTLAKEHSAADWSYRPLPRDWRNYA 167
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 340
D L+ + M+ +L S K+ +D + R+ +L I
Sbjct: 168 ALDVELLIELRRKMQRELKSQGKDGW-ADEEFRYALQTGMGPRRE-------HPVPWLRI 219
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ + Q LAV L E RD +ARA D + G +L + +++E A + P A + R +
Sbjct: 220 SHINTVSQDHQGLAVAKALWEKRDELARAYDIAPGLLLSDDSIVEAASRKPRNAREFRMI 279
>gi|170723061|ref|YP_001750749.1| ribonuclease D [Pseudomonas putida W619]
gi|169761064|gb|ACA74380.1| ribonuclease D [Pseudomonas putida W619]
Length = 377
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 126/289 (43%), Gaps = 19/289 (6%)
Query: 137 KDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLR 196
+ L EL + +++ A+D E + +F L+QI +++D L L V P L
Sbjct: 12 QTLAELCQRWRTLPFVALDTEFMRVDTFYPKAGLIQIGDGERAYLIDPL-LIVDWQP-LG 69
Query: 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFC 254
E+ +D KV+H D+ L R G +FDT A+ L L S+ Y L+
Sbjct: 70 ELLEDAGVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLG-FSMGYSRLVQEVL 128
Query: 255 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 314
G+ K +DW RPL D + YA ED +L ++ ++ P+ S++ + E
Sbjct: 129 GLELPKGETRSDWLQRPLSDTQVSYAAEDAVHLAELFAALR------PRLSDDKYAWVLE 182
Query: 315 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 374
R+ E E L + L L QQLAV+ LC WR+ AR+ D
Sbjct: 183 DGAELVAALRREVEPETLYRDVKL------AWKLGRQQLAVLRELCAWREREARSRDVPR 236
Query: 375 GYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVL-SIIKNS 422
+L +L +AK P + L + + H R GP L +IK +
Sbjct: 237 NRILKEHSLWPMAKNQPDNLSALAK-IDEMHPRTIRQDGPFLIELIKRA 284
>gi|326384419|ref|ZP_08206099.1| 3'-5' exonuclease [Gordonia neofelifaecis NRRL B-59395]
gi|326196764|gb|EGD53958.1| 3'-5' exonuclease [Gordonia neofelifaecis NRRL B-59395]
Length = 407
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 113/255 (44%), Gaps = 16/255 (6%)
Query: 147 KSVDEFAVDLEHNQYRSFLGLTCLMQIS-TRTEDFVVDTLKLRVQVGPYLREVFKDPTKK 205
+ AVD E + L+Q+ + F++D + + P + + P +
Sbjct: 45 RGTGPIAVDTERASGYRYSQRAYLVQLKRAGSGSFLIDPISHPDALSPLI-DALDGP--E 101
Query: 206 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNA 265
++H AD+D+ L R+ G +FDT A R+L + + +L ++ F + K + A
Sbjct: 102 WILHAADQDLPCL-RELGFTPTTLFDTELAGRLLNIPKVNLAAMVAEFLHLGLAKGHGAA 160
Query: 266 DWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQ 325
DW RPLPD+ L YA D L+ + D + LS ++ + + +Y + R
Sbjct: 161 DWSRRPLPDDWLNYAALDVEVLVELRDAVADALSEAGRDEWAAQ-------EFAYVLARP 213
Query: 326 LYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 385
+ +I+ L+ +A+QLAVV L R+ +A D + G VLP+ +I
Sbjct: 214 PSAPKPDRWRRTSNIHDLR----SARQLAVVRELWTAREELAALRDVAPGRVLPDSAIIT 269
Query: 386 IAKQLPTTAAKLRRL 400
A P L RL
Sbjct: 270 AATANPVDGKALTRL 284
>gi|395789430|ref|ZP_10468950.1| ribonuclease D [Bartonella taylorii 8TBB]
gi|395429973|gb|EJF96025.1| ribonuclease D [Bartonella taylorii 8TBB]
Length = 384
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 118/269 (43%), Gaps = 14/269 (5%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
+ + DL+ A L++ D VD E + +F CL+Q+++ ++D + + +
Sbjct: 5 ITQTTDLEIALATLRTSDFITVDTEFIRETTFWPQLCLIQLASPDTTVLIDPMSQDIDLQ 64
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLH 251
+ ++ D KV H A +DI + GI +FDT A + + S + ++
Sbjct: 65 AFF-DLMVDNKIVKVFHAARQDIETIYHLGGIIPSPLFDTQIAGSICGFGDSISYDQIVQ 123
Query: 252 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP 311
G +K + DW RPL ++ L YA D YL IY ++K +L + D
Sbjct: 124 RCTGHQLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDIYLLLKKQLEKNKRIHWMDDEI 183
Query: 312 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 371
+ ++YD + E E + G ++LAV+ + WR+ AR +
Sbjct: 184 AILLSPKTYD----MPEDEAWKKVK--------GKVKKPRELAVLQKIAAWRERKARKYN 231
Query: 372 ESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+++ + LIEIA Q P L+RL
Sbjct: 232 IPRRHIMKDECLIEIATQQPKDETALKRL 260
>gi|389877692|ref|YP_006371257.1| Ribonuclease D [Tistrella mobilis KA081020-065]
gi|388528476|gb|AFK53673.1| Ribonuclease D [Tistrella mobilis KA081020-065]
Length = 422
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 126/270 (46%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++ + + L++L +LK+ VD E + +++ CL+Q++ VD L + +
Sbjct: 1 MITDTQSLRQLVDELKAEPFVTVDTEFMREKTYWPKLCLVQLAGAQRAAAVDPLADGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P L E+ DP+ KV H A +D+ FG MFDT A+ V E E L+
Sbjct: 61 AP-LGELLADPSVLKVFHAARQDVEIFLLLFGNVPRPMFDTQVAAMVCGFGESVGYETLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
+ + +K + DW RPL + + YA D +L +Y +KL+ + ++S +
Sbjct: 120 NKLAKASIDKSSRFTDWSRRPLTPKQIAYALADVTHLRTVY----LKLAKLLEDSGREEW 175
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
E+ + + YE E ++ I + L+ + L +V L WR+ A++
Sbjct: 176 LDEEMATLN---APETYESR--PEAAWERI---RTRSLDRRFLGLVRELAAWRERQAQSR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ ++ + TL+E+A P +A L+R+
Sbjct: 228 NVPRTFISKDETLLEMASSQPRSAEDLKRV 257
>gi|395790953|ref|ZP_10470412.1| ribonuclease D [Bartonella alsatica IBS 382]
gi|395409249|gb|EJF75848.1| ribonuclease D [Bartonella alsatica IBS 382]
Length = 384
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 120/270 (44%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + DL+ A L++ D VD E + +F CL+Q+++ ++D + + +
Sbjct: 4 LITQTIDLEIALATLRTSDFVTVDTEFIRETTFWPQLCLIQLASPDATVLIDPMSQDIDL 63
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
+ ++ D KV H A +DI + GI +FDT A + + S + ++
Sbjct: 64 KSFF-DLMVDEKIVKVFHAARQDIEIIYHLGGIIPTPLFDTQIAGSICGFGDSISYDQIV 122
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G +K + DW RPL ++ L YA D YL +Y ++K +L + D
Sbjct: 123 QRCTGHQLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRIHWMDDE 182
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ ++YD + E+ + L ++LAV+ + WR+ AR
Sbjct: 183 IAILLAPKTYD----------MPEDEAWKKVKGKVKKL--RELAVLQKIAAWRERKARKY 230
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ +++ + LIEIA Q P + L+RL
Sbjct: 231 NIPRRHIMKDECLIEIAIQQPKDESALKRL 260
>gi|419967866|ref|ZP_14483740.1| ribonuclease D [Rhodococcus opacus M213]
gi|414566760|gb|EKT77579.1| ribonuclease D [Rhodococcus opacus M213]
Length = 429
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 109/268 (40%), Gaps = 30/268 (11%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFV-VDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+Q+ V VD + + P L EV + ++H
Sbjct: 55 LAVDAERASGFRYSARAYLVQLRREGAGTVLVDPIPTAADLAP-LAEVIN--PLEWILHS 111
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L + G+ +FDT A R+ ER L ++ G+ K + ADW R
Sbjct: 112 ADQDLPGLA-EIGLAPATLFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAADWSKR 170
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE----SENSDTPLTEVYKRSYDVCRQL 326
PLPD L YA D L+ + ++M +L K E L K D R+
Sbjct: 171 PLPDSWLNYAALDVEVLVELRNVMAAELDEQGKSEWAAQEFEHIRLAGPPKPKADRWRRT 230
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
HI L+ +QLA L + R+ +AR D S VLP+ +I+
Sbjct: 231 S-----------HITSLK----TQRQLAAARSLWQAREDLARKRDVSPSRVLPDSAIIDA 275
Query: 387 AKQLPTTAAKLRRL------LKSKHSYI 408
A + P LR L + +HS I
Sbjct: 276 ATKDPRGIEALRALPVFGGPRQRRHSRI 303
>gi|94500848|ref|ZP_01307374.1| ribonuclease D [Bermanella marisrubri]
gi|94426967|gb|EAT11949.1| ribonuclease D [Oceanobacter sp. RED65]
Length = 382
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 122/278 (43%), Gaps = 22/278 (7%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKL-- 187
K ++ DL + + A+D E + +F L+QI+ +E ++VD +++
Sbjct: 1 MKYIDTHIDLASACEHWNTCNRIALDSEFMRVDTFYPKLALIQINDGSETYLVDPVRINR 60
Query: 188 ------RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL 241
R +V L EV + KV+H D + G+ + DT A+ + +
Sbjct: 61 AHRGEPREEVWGPLIEVLSNQNVVKVLHSPSEDFDAFYSNLGVVPSPIIDTQWAAAMASI 120
Query: 242 E-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300
+ + L+ ++ K +DW RPL DE + YA +D +LL I ++ +L +
Sbjct: 121 DGIMGYQKLVKQLLDIDLEKGATRSDWLQRPLTDEQIHYAADDVEHLLEITKRLETQLVT 180
Query: 301 MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGL 359
+ + + C ++ E L+ + I ++ A L +QL + L
Sbjct: 181 QGR------------WTWLLEDCERMVEDWLIGQEQGYGIERIKKAWMLKPKQLFTLEKL 228
Query: 360 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
WR+ R ++ G++L + L+++A +LPT+ +L
Sbjct: 229 LAWRERRCRTVNKPRGHILNDSLLVDLAMRLPTSTKQL 266
>gi|373853941|ref|ZP_09596739.1| 3'-5' exonuclease [Opitutaceae bacterium TAV5]
gi|372471808|gb|EHP31820.1| 3'-5' exonuclease [Opitutaceae bacterium TAV5]
Length = 375
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 86/181 (47%), Gaps = 9/181 (4%)
Query: 121 KPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDF 180
+PPS F+L+++ L L A + VDE A+D E + + CL+Q + +
Sbjct: 9 RPPS-----FQLIDQPAQLAPLLAAIDRVDEVALDTEADNMYHYHTRVCLLQFLVDGDVY 63
Query: 181 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 240
+VD + + K K VMHG+D D+ L ++FDT A+++L
Sbjct: 64 LVDLMPPLPLAPLW----EKLSKKHLVMHGSDFDLRLLHDLCEFRPKSLFDTMLAAQLLN 119
Query: 241 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300
+R L LL GV +K Q A+W RPL ++L YA D +L + DI+ +L
Sbjct: 120 RKRIGLAALLSDHFGVTLDKGGQKANWSRRPLTAKLLDYASLDVWHLFELRDILTRELGR 179
Query: 301 M 301
+
Sbjct: 180 L 180
>gi|209964842|ref|YP_002297757.1| ribonuclease D [Rhodospirillum centenum SW]
gi|209958308|gb|ACI98944.1| ribonuclease D, putative [Rhodospirillum centenum SW]
Length = 385
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 120/294 (40%), Gaps = 15/294 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ DL +LK + VD E + +++ CL+Q++ E +D L + +
Sbjct: 3 LITTTADLAAFVTRLKGAEYVTVDTEFMREKTYWPQLCLVQVAGPDEAAAIDPLAEGMDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P L E+ DP KV H A +D+ G +FDT A+ V + E L+
Sbjct: 63 TP-LFELLHDPGVLKVFHAARQDVEIFVHLTGAVPAPLFDTQIAAMVCGFGDSVGYETLI 121
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
+K + DW RPL + L YA D +L Y+ ++ +L+ +E +
Sbjct: 122 TKLTSARIDKSSRFTDWSQRPLTERQLSYALSDVTHLRPAYEKLRRRLAKTGREHWLDEE 181
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ +Y V + + L + LAV+ + WR+ A+
Sbjct: 182 NVILADPATYRVDPEEAWRRLKVRTE------------KPRFLAVLKEVAAWREREAQRK 229
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE-RYMGPVLSIIKNSM 423
D VL + ++EIA PTT L R S + RY VL+ I+ ++
Sbjct: 230 DIPRNRVLRDEAIVEIAAHAPTTVEDLARTRGLGASLAQGRYGTEVLAAIQTAL 283
>gi|33152538|ref|NP_873891.1| ribonuclease D [Haemophilus ducreyi 35000HP]
gi|33148762|gb|AAP96280.1| ribonuclease D [Haemophilus ducreyi 35000HP]
Length = 373
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 16/248 (6%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
A+D E + RS+ L+Q+ + ++D + P++ ++ +P KV+H
Sbjct: 29 IALDTEFIRTRSYYPKFGLIQLFDGEQTSLIDPTTIS-DFLPFI-DLLANPNIVKVLHAC 86
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVR 270
D+ Q F L + DT + L + L++H+ + +K DW R
Sbjct: 87 SEDLEIFQHQFNQALTPLIDTQIMAAFSGLGLSIGFAKLVNHYLNIELDKGASRTDWLAR 146
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSM-PKESENSDTPLTEVYKRSYDVCRQLYEK 329
PL + L+YA D +YLL IY ++ +L+ +E+ N + L V KR+ + L
Sbjct: 147 PLTETQLQYAAADVYYLLPIYQKLQAELAQTNWQEAVNQECQLL-VNKRN----KTLELN 201
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
+ E SY L QQLA++ L +WR AR D + +V+ ++LIEIAK
Sbjct: 202 DAYKEISY-------AWTLTRQQLAILKLLAKWRIEEARKRDLALNFVIKEQSLIEIAKS 254
Query: 390 LPTTAAKL 397
P ++L
Sbjct: 255 QPKHTSQL 262
>gi|390937080|ref|YP_006394639.1| 3'-5' exonuclease [Bifidobacterium bifidum BGN4]
gi|389890693|gb|AFL04760.1| 3'-5' exonuclease [Bifidobacterium bifidum BGN4]
Length = 456
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 8/178 (4%)
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
D G+ +FDT A+R+L L R L + H+ GV KE+ ADW RPLP + YA
Sbjct: 136 DIGLTPQALFDTEIAARMLGLHRFGLAAVTEHYLGVTLAKEHSAADWSYRPLPRDWRNYA 195
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 340
D L+ + M+ +L S K+ +D + R+ +L I
Sbjct: 196 ALDVELLIELRRKMQRELKSQGKDGW-ADEEFRYALQTGMGPRRE-------HPVPWLRI 247
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 398
+ + Q LAV L E RD +ARA D + G +L + +++E A + P A + R
Sbjct: 248 SHINTVSQDHQGLAVAKALWEKRDELARAYDIAPGLLLSDDSIVEAASRKPRNAREFR 305
>gi|312139461|ref|YP_004006797.1| rnase d [Rhodococcus equi 103S]
gi|311888800|emb|CBH48112.1| putative RNase D [Rhodococcus equi 103S]
Length = 445
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 117/275 (42%), Gaps = 25/275 (9%)
Query: 132 LVEEVKDLKELAAKLKS-VDEFAVDLEHNQYRSFLGLTCLMQIS-TRTEDFVVDTLKLRV 189
++E +++ A +L + AVD E + L+Q+ F++D +
Sbjct: 55 VIETAAGVRDAAERLAAGTGPLAVDAERASGFRYSSRAYLVQLRRAGAGSFLLDPIPTAE 114
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
+ P LR+ + V+H AD+D+ L + G+ +FDT A R+ ER L +
Sbjct: 115 DLEP-LRDAING--LEWVLHSADQDLPCLA-ELGLEPAALFDTELAGRLAGFERVGLAAI 170
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ G+ K + ADW RPLPD L YA D LL + + M +L++ K
Sbjct: 171 VERTLGLELRKGHGAADWSTRPLPDAWLNYAALDVEVLLELREAMATELAAQGK------ 224
Query: 310 TPLTEVYKRSYDVCRQL----YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
TE + ++ R + + S +H + +QLA V L RD
Sbjct: 225 ---TEWAAQEFEHVRLAGPPQPKPDRWRRTSQIHSLK------SPRQLAAVRELWTTRDE 275
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
IAR D S +LP+ ++ A P + LR L
Sbjct: 276 IARKRDISPSRILPDSAIVTAASADPKSIDTLRAL 310
>gi|162146523|ref|YP_001600982.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
gi|209543478|ref|YP_002275707.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
gi|342179222|sp|A9H9B7.1|RND_GLUDA RecName: Full=Ribonuclease D; Short=RNase D
gi|161785098|emb|CAP54642.1| putative Ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
gi|209531155|gb|ACI51092.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
Length = 393
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 120/279 (43%), Gaps = 14/279 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ +DL + +L+ ++D E + R++ CL+Q++ + E VVDTL + +
Sbjct: 14 LITTTEDLTGVVERLRREPFVSIDTEFVRERTYWPELCLVQLAGQDEVVVVDTLAPGIDL 73
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P L + DP KV H A +D+ FG +FDT A+ V ++ + L+
Sbjct: 74 AP-LGVLLDDPEVVKVFHAARQDLEIFLYLFGHLPAALFDTQVAAMVAGFGDQVGYDNLV 132
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G + +K ++ +DW RPL + + YA D +L +Y ++ +L E E
Sbjct: 133 ASLTGAHIDKAHRFSDWSARPLSEAQIAYAAADVTHLRTVYQLLLERL-----EREGRLD 187
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ D + E L E ++ N + L V+ + WR+ A+
Sbjct: 188 WVASDLAVLSDPATFRPDPETLWER-------MRPRTSNRRMLGVLRAITAWREREAQRV 240
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 409
+ +L + +L+EIA P L R+ + E
Sbjct: 241 NVPRQRLLKDESLLEIAATAPADVDALARIRGVSRGFAE 279
>gi|332667981|ref|YP_004450769.1| 3'-5' exonuclease [Haliscomenobacter hydrossis DSM 1100]
gi|332336795|gb|AEE53896.1| 3'-5' exonuclease [Haliscomenobacter hydrossis DSM 1100]
Length = 395
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 113/254 (44%), Gaps = 20/254 (7%)
Query: 149 VDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVM 208
++ D E + F CL+Q++TR F++D L+ + P+L E+ ++P KV
Sbjct: 23 IEWMCFDSEFVGEKRFTTRLCLIQVATRHGLFLIDPFPLK-NLDPFL-EMIENPNIVKVT 80
Query: 209 HGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNAD 266
H + D L FG N FDT A+ L R L + L+ +N NK + AD
Sbjct: 81 HAGENDYRLLYASFGTIPKNTFDTQIAAGFLGY-RYPLAFKKLVETELKINMNKSFTVAD 139
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM--PKESENSDTPLTEVYKRSYDVCR 324
W RP L+YA +D L YD+ K++ + + K ++ + + SY
Sbjct: 140 WEARPFNQNQLKYAIQDIEPL---YDLWKMQEADLLRKKRLHWAEEEFKVLERESYYAKE 196
Query: 325 QLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 384
YE + NS L LN ++ + L EWR A + S VLP++ +
Sbjct: 197 PHYE----ALNSDLM------KSLNKRERLFLLRLFEWRRNTAEDKNYSKEMVLPSKFMS 246
Query: 385 EIAKQLPTTAAKLR 398
+I + + + A LR
Sbjct: 247 QIVRSMRSGRAGLR 260
>gi|407782079|ref|ZP_11129294.1| ribonuclease D [Oceanibaculum indicum P24]
gi|407206552|gb|EKE76503.1| ribonuclease D [Oceanibaculum indicum P24]
Length = 390
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 122/283 (43%), Gaps = 14/283 (4%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + K L L + VD E + +++ CL+Q++ +D L + +
Sbjct: 4 LITDTKTLDVFCRGLAKAEYITVDTEFMREKTYYPQLCLIQLAGPDTAAAIDPLAPGIDL 63
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P ++ DP KV H A +DI + G+ +FDT A+ V + E L
Sbjct: 64 KPVF-DLLADPGILKVFHAARQDIEIFYQLTGVVPAPLFDTQVAAMVCGFGDSVGYETLA 122
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
+K + DW RPL L YA D +L IYD KLS+M +++ +
Sbjct: 123 TKLVNARIDKSSRFTDWSHRPLAPHQLDYALADVTHLRIIYD----KLSAMLEKNGRASW 178
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
E+ S Y+ + + +S+ L+ + + LA++ + WR++ AR
Sbjct: 179 LTEEMAVLSNPAT---YDADPM--DSWRR---LKPRTNSTKFLAILREIAAWREIEARKR 230
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 413
D +L + L+EIA ++P A +L ++ + E MG
Sbjct: 231 DLPRNRLLRDEALLEIAARVPNNADELAKIRALSKGFAEGPMG 273
>gi|343924647|ref|ZP_08764191.1| ribonuclease D [Gordonia alkanivorans NBRC 16433]
gi|343765447|dbj|GAA11117.1| ribonuclease D [Gordonia alkanivorans NBRC 16433]
Length = 428
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 121/274 (44%), Gaps = 16/274 (5%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+QI R + F++D + + P + + + P + V+H
Sbjct: 56 IAVDTERASGYRYSQRAYLIQIKRRGSGSFLLDPIADPEALAPVI-DALRGP--EWVLHA 112
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L R+ G ++DT A R+L L + +L ++ F G+ K + ADW R
Sbjct: 113 ADQDLPCL-RELGFECVELYDTELAGRLLGLAKVNLAAMVAQFLGLGLLKGHGAADWSRR 171
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLPD+ L YA D L+ + D M L+ K+ + V R R +
Sbjct: 172 PLPDDWLNYAALDVEVLVELRDAMDAALAESGKDGWAREE-FAYVLSRPPAPPR----TD 226
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+ S +H +A+ LA V L R+ +A D + G VLP+ ++ A
Sbjct: 227 RWRKTSNIHTVK------SARALAAVRELWTAREELAERRDVAPGRVLPDTAIVNAATVD 280
Query: 391 PTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 424
P + ++L RL R G LS ++ + +
Sbjct: 281 PKSNSELTRLPVFGGPRQRRQAGIWLSALQRARE 314
>gi|407777000|ref|ZP_11124271.1| ribonuclease D [Nitratireductor pacificus pht-3B]
gi|407301165|gb|EKF20286.1| ribonuclease D [Nitratireductor pacificus pht-3B]
Length = 392
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 24/275 (8%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + KDL+ A+L D VD E + +F CL+Q++ +VD L + +
Sbjct: 3 LITKQKDLEAAIAELSKSDFVTVDTEFIRETTFWPELCLIQMAAPGVTALVDPLSADIDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ ++ + KV H A +DI + G+ +FD+ A+ V + S + L+
Sbjct: 63 KPFF-DLMANERVTKVFHAARQDIEIIFHLGGLIPHPVFDSQVAATVCGFGDSISYDQLV 121
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G + +K + DWR RPL D+ L YA D +L+ +Y +K +L+ + ++
Sbjct: 122 SRITGAHIDKSSRFTDWRRRPLTDKQLSYALADVTHLIDVYAHLKEELTREGRAHWLNEE 181
Query: 311 PLTEVYKRSY-----DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
+ +Y D R+L L I + AV+ + WR+
Sbjct: 182 MALLTARETYDPHPDDAWRRL----------KLRIK-------KPIEFAVLQQVATWREY 224
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
AR + G V+ + + E+A+Q P A L RL
Sbjct: 225 EARERNVPRGRVIKDDAIYEVAQQQPRDAEALGRL 259
>gi|386390385|ref|ZP_10075174.1| ribonuclease D [Haemophilus paraphrohaemolyticus HK411]
gi|385693110|gb|EIG23765.1| ribonuclease D [Haemophilus paraphrohaemolyticus HK411]
Length = 372
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 132/309 (42%), Gaps = 36/309 (11%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSF---LGLTCLM---QIS----TRTED 179
+ VE + L E+ + V A+D E + R+F LGL L Q+S T ED
Sbjct: 7 YLWVENEQQLAEVCQNARQVPAVALDTEFIRERTFYPKLGLIQLFDGKQVSLIDPTTIED 66
Query: 180 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 239
F P++ + D KV+H D+ + F + DT + L
Sbjct: 67 F-----------SPFI-ALLADQNVIKVLHACSEDLEVFECSFNQLPTPLVDTQVMANFL 114
Query: 240 KLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298
L + L+ H+ + +K DW RPL + L+YA D YLL IY M+ +L
Sbjct: 115 NLGISVGFAKLVLHYLDIELDKGASRTDWLARPLSETQLQYATADVWYLLPIYQKMQTEL 174
Query: 299 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 358
+ ++ ++ + KR E+E + +Y+ I L QQLAV+
Sbjct: 175 AQTNWQNAVNEECSAFLTKR---------EREDDLDKAYIKISN--AWRLEPQQLAVLKL 223
Query: 359 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 418
L +WR AR+ + + +V+ +L EIA+ LP ++L + + R+ +L +
Sbjct: 224 LAKWRVEEARSRNLALNFVVKEASLYEIARILPKNPSQLLDFMHPNE--VRRHGKKILRL 281
Query: 419 IKNSMQNAA 427
++ M A
Sbjct: 282 VEQGMNTPA 290
>gi|90419527|ref|ZP_01227437.1| ribonuclease D [Aurantimonas manganoxydans SI85-9A1]
gi|90336464|gb|EAS50205.1| ribonuclease D [Aurantimonas manganoxydans SI85-9A1]
Length = 385
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 116/264 (43%), Gaps = 14/264 (5%)
Query: 138 DLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLRE 197
+L E ++L + + VD E + +F CL+Q+++ +VD L + + P+ +
Sbjct: 11 ELSEACSRLAAAEFVTVDTEFIRETTFWPELCLIQMASDDLAVLVDPLADGLDLAPFF-D 69
Query: 198 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHFCGV 256
+ +D KV H A +D+ + + I +FDT A+ V E + + L+
Sbjct: 70 LMRDERIVKVFHAARQDVEIIHKLGDIIPVPLFDTQVAAMVCGFGESIAYDQLVARTTDG 129
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
+K + DWR RPL D+ L YA D YL +Y + +L+ + +
Sbjct: 130 RIDKTSRFTDWRRRPLSDQQLAYALADVTYLRDVYRFLSAQLAEKGRTRWVDEEMAVLTD 189
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
+YD L ++++ + + Q L VA WR+ AR D+ G
Sbjct: 190 PATYD---------LHPDDAWRRLKLRVRKPIELQILKEVAA---WREREAREADKPRGR 237
Query: 377 VLPNRTLIEIAKQLPTTAAKLRRL 400
+L + + EIA+Q PT L RL
Sbjct: 238 ILKDDAIYEIAQQAPTDEQSLSRL 261
>gi|359298919|ref|ZP_09184758.1| ribonuclease D [Haemophilus [parainfluenzae] CCUG 13788]
gi|402305636|ref|ZP_10824695.1| ribonuclease D [Haemophilus sputorum HK 2154]
gi|400376749|gb|EJP29636.1| ribonuclease D [Haemophilus sputorum HK 2154]
Length = 370
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 115/274 (41%), Gaps = 20/274 (7%)
Query: 128 TPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKL 187
P+ V+ + L+E+ + A+D E + R+F L+Q+ ++D K
Sbjct: 3 IPYLWVDSNEKLREVCEAARQKKVVALDTEFIRIRTFYPQLGLIQLFDGQTVSLIDPKK- 61
Query: 188 RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SL 246
+Q + D KV+H D+ Q F M DT + L L +
Sbjct: 62 -IQDFSAFCHLLADEQVIKVLHACSEDLEVFQHRFQQLPTPMIDTQIMAGFLGLGASIGF 120
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
L+ H+ + +K DW RPL + L YA D YLL IY M+ + E
Sbjct: 121 AKLVAHYLEIELDKGASRTDWLARPLSEVQLDYAAADVWYLLPIYQKMQEAM------QE 174
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSEN---SYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
N P + C QL +K + N +YL I Q L QQLAV+ L +WR
Sbjct: 175 NRWMPAVR------EECEQLLQKRQKTVNPNKAYLDIS--QAWQLTPQQLAVLQVLAKWR 226
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
A+ D + +V+ ++L EIAK P ++L
Sbjct: 227 LEEAQKRDLALNFVVKEQSLFEIAKTQPKHTSEL 260
>gi|403727735|ref|ZP_10947771.1| ribonuclease D [Gordonia rhizosphera NBRC 16068]
gi|403203798|dbj|GAB92102.1| ribonuclease D [Gordonia rhizosphera NBRC 16068]
Length = 426
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 111/250 (44%), Gaps = 16/250 (6%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQIS-TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+QI T F++D + + P + E K P + V+H
Sbjct: 57 IAVDTERASGYRYSQRAYLIQIRRTGAGTFLLDPIAEPEGLAPVI-EALKGP--EWVLHA 113
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L R+ G +FDT A R+L + +L ++ F G K + ADW R
Sbjct: 114 ADQDLPCL-RELGFVCDTLFDTELAGRLLGAGKVNLAAMVADFLGFGLVKGHGAADWSRR 172
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLPDE L YA D L+ + + L+ K+ + +Y + R
Sbjct: 173 PLPDEWLNYAALDVEVLVDLRHAVHAALTEAGKDEWARQ-------EFAYILDRPPTPPR 225
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+I+ ++ +++ LA V L R+ +A+ D + G +LP+ ++ A
Sbjct: 226 PDRWRKTSNIHAVK----SSRALAAVRELWTAREELAQRRDVAPGRILPDSAIVTAATAN 281
Query: 391 PTTAAKLRRL 400
P +A +L RL
Sbjct: 282 PKSADELTRL 291
>gi|424852269|ref|ZP_18276666.1| ribonuclease III [Rhodococcus opacus PD630]
gi|356666934|gb|EHI47005.1| ribonuclease III [Rhodococcus opacus PD630]
Length = 429
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 105/254 (41%), Gaps = 24/254 (9%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVV-DTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+Q+ V+ D + + P L EV + ++H
Sbjct: 55 LAVDAERASGFRYSARAYLVQLRREGAGTVLLDPIPTAADLAP-LAEVIN--PLEWILHS 111
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L + G+ +FDT A R+ ER L ++ G+ K + ADW R
Sbjct: 112 ADQDLPGLA-EIGLAPATLFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAADWSKR 170
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES----ENSDTPLTEVYKRSYDVCRQL 326
PLPD L YA D L+ + ++M +L K E L K D R+
Sbjct: 171 PLPDSWLNYAALDVEVLVELRNVMAAELDEQGKSGWAAQEFEHIRLAGPPKPKADRWRRT 230
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
HI L+ +QLA L + R+ +AR D S VLP+ +I+
Sbjct: 231 S-----------HITSLK----TQRQLAAARSLWQAREDLARKRDVSPSRVLPDSAIIDA 275
Query: 387 AKQLPTTAAKLRRL 400
A + P + LR L
Sbjct: 276 ATKDPRSIEALRAL 289
>gi|419839681|ref|ZP_14363087.1| ribonuclease D [Haemophilus haemolyticus HK386]
gi|386909259|gb|EIJ73935.1| ribonuclease D [Haemophilus haemolyticus HK386]
Length = 380
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 125/272 (45%), Gaps = 18/272 (6%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
F ++ + L E+ + A+D E + ++ L+Q+ ++D L +
Sbjct: 11 FTVITDNTSLLEICNLAQQQSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLAI-T 69
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
P++ + +P KV+H D++ ++F +M DT +R L L ++ L
Sbjct: 70 DFSPFV-ALLSNPKVLKVLHSCSEDLLVFLQEFDQLPHSMIDTQIMARFLGLGTSAGLAK 128
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES--- 305
L H + V +K +W RPL D L+YA D YLL +Y I++ +L+ P E
Sbjct: 129 LAHQYLNVEIDKGATRTNWIKRPLSDIQLKYAAGDVWYLLPLYHILEKELAKTPWEQAVR 188
Query: 306 ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
++ + L + +K L E++ SE +YL I LN +L+ + L +WR
Sbjct: 189 DDCELALAKTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAQWRQN 236
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
+A D + Y++ + L ++AK P +++
Sbjct: 237 VAIERDLALSYIVKSDNLWKVAKNNPRNTSEM 268
>gi|213964497|ref|ZP_03392697.1| ribonuclease D [Corynebacterium amycolatum SK46]
gi|213952690|gb|EEB64072.1| ribonuclease D [Corynebacterium amycolatum SK46]
Length = 433
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 125/295 (42%), Gaps = 37/295 (12%)
Query: 116 DVEAVKPPSLEQTPFKLVEEVKDLKELAAKL-KSVDEFAVDLEHNQYRSFLGLTCLMQIS 174
DVE P+ E TP +++ ++ D+ + +L K AVD E + L+Q
Sbjct: 10 DVEVRLAPA-EGTP-RVLSDIDDIIDAGEQLAKGHGWLAVDTERASAYRYDDRAFLLQFR 67
Query: 175 TR-TEDFVVDTLKLRVQVGPYLREVFKDPTKK--KVMHGADRDIVWLQRDFGIYLCNMFD 231
R F++D + G VF ++H A D+ L G+Y + D
Sbjct: 68 RRGAGTFLIDP-----EDGRKAMAVFGSSVNNLTWIIHAAHSDLPCLA-ALGLYPTKVID 121
Query: 232 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 291
T A R+L LER +L L GV K + DW RPLP + L YA D L+ +
Sbjct: 122 TELAGRLLGLERVNLAALTERLLGVGLAKGHGREDWSTRPLPADWLDYAALDVELLIELA 181
Query: 292 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYL------HIY-GLQ 344
+++ L+ + + + Q E+EL YL H + GL+
Sbjct: 182 EVLCQALTELDR----------------LEWLEQECERELAINRKYLDGLHVGHSWQGLK 225
Query: 345 GAG--LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
G G +QL V L RD IA+ D S +V+ + L IA+QLP T +L
Sbjct: 226 GIGKLRTPEQLHVARALWTERDEIAQQRDVSPTHVMGHSVLRTIAEQLPGTQREL 280
>gi|114326875|ref|YP_744031.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
gi|114315049|gb|ABI61109.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
Length = 429
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 116/267 (43%), Gaps = 14/267 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + +DL L L+ +D E + R++ C++Q+ V+DTL + +
Sbjct: 48 LITKSEDLAALCTTLRREPYVTIDTEFMRERTYWPELCVVQLGGADCVAVIDTLAPELDL 107
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P + E+ DP KV H +DI FG MFDT A+ V ++ + L+
Sbjct: 108 AP-VGELLADPAVIKVFHACRQDIEIFLLRFGSIPQPMFDTQVAAMVAGFGDQVGYDTLV 166
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G + +K ++ +DW RPL + YA D +L +Y+ ++ +L E E
Sbjct: 167 SSLTGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRL-----EKEGRLA 221
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
++E D + + E L+ N + L ++ +C WR+V A+
Sbjct: 222 WVSEEMAVLNDPATYRTDPVTMWER-------LRPRTNNRRYLGLLRAICAWREVEAQRL 274
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKL 397
+ ++ + +L+EIA P A L
Sbjct: 275 NIPRQRLIKDESLLEIAATSPADAESL 301
>gi|239831578|ref|ZP_04679907.1| ribonuclease D [Ochrobactrum intermedium LMG 3301]
gi|239823845|gb|EEQ95413.1| ribonuclease D [Ochrobactrum intermedium LMG 3301]
Length = 385
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 119/270 (44%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + L+E + L D VD E + +F CL+Q+++ +VD L + +
Sbjct: 3 LITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPNHTALVDALAPGLDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ + D KV H A +DI + + +FD+ A+ V + S + L+
Sbjct: 63 APFF-SLMADEKVVKVFHAARQDIEIVFHLGDLIPSPVFDSQVAAMVCGFGDAISYDQLV 121
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G + +K + DWR RPL ++ L YA D YL IY +K +L + ++
Sbjct: 122 QKVTGKHIDKSSRFTDWRRRPLSEKQLDYALADVTYLRDIYLYLKQELEKEGRSEWVNEE 181
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ +YD L ++++ + + + A+V + WR+ AR
Sbjct: 182 MAVLTSRETYD---------LHPDDAWRRV---KARVRKPIEQAIVQAVAAWREREARER 229
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ G ++ + T+ EIA+Q P A L RL
Sbjct: 230 NVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|378717672|ref|YP_005282561.1| putative ribonuclease D [Gordonia polyisoprenivorans VH2]
gi|375752375|gb|AFA73195.1| putative ribonuclease D [Gordonia polyisoprenivorans VH2]
Length = 428
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 105/230 (45%), Gaps = 16/230 (6%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQIS-TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
A+D E + L+QI T F++D ++ + P + + +P + ++H
Sbjct: 54 VALDTERASGYRYSQRAYLIQIRRTGAGSFLLDPIEEPEALRPVI-DALAEP--EWILHA 110
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L R+ G + +FDT A R+L L + +L ++ F G K + ADW R
Sbjct: 111 ADQDLPCL-RELGFHATTLFDTELAGRLLGLTKVNLAAMVEQFLGFGLQKGHGAADWSKR 169
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLP E L YA D L+ + D M L +++ SD E +Y + R
Sbjct: 170 PLPAEWLNYAALDVEVLIELRDAMDAAL----RDAGKSDWAAEEF---AYVLRRPPSPPR 222
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 380
+I+ ++ A+ LA V L R+ IA+ D + G VLP+
Sbjct: 223 TDRWRRTANIHTVK----TARGLAAVRELWSAREEIAQRRDVAPGRVLPD 268
>gi|218461991|ref|ZP_03502082.1| RNase D protein [Rhizobium etli Kim 5]
Length = 293
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 121/271 (44%), Gaps = 16/271 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
++E DL +L D +D E + +F CL+Q+++ T + +VD L + +
Sbjct: 1 MIETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ E+ D KV H A +DI + + +FDT A+ V + S + L+
Sbjct: 61 APFF-ELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVCGFGDSVSYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS-MPKESENSD 309
V+ +K + DW RPL D+ L YA D +L +Y + LSS + +E S
Sbjct: 120 SRSKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVY----LSLSSQLDREGRTS- 174
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
+ DV ++ ++++ L+ Q+LA++ + WR+ ARA
Sbjct: 175 -----WLREEMDVLEARETYDMHPDDAWQR---LKMRLRKPQELAILKYVAAWREREARA 226
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ VL + + EIA+Q P L RL
Sbjct: 227 RNVPRSRVLKDDAIYEIAQQQPKDTEALGRL 257
>gi|146281747|ref|YP_001171900.1| ribonuclease D [Pseudomonas stutzeri A1501]
gi|145569952|gb|ABP79058.1| ribonuclease D [Pseudomonas stutzeri A1501]
Length = 401
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 117/264 (44%), Gaps = 17/264 (6%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L L A+ + + AVD E + +F + L+Q+ +++D L +R P+ +
Sbjct: 41 LARLCAEWRQLPFVAVDTEFMRVDTFYPIAGLVQVGDGRRAYLIDPLAVR-DWHPFA-TL 98
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGV 256
D KV+H D+ L R G +FDT A+ L + S+ Y L+ G+
Sbjct: 99 LDDAAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIG-FSMGYSRLVQAVLGI 157
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
K +DW RPL + +RYA ED +L +Y+ + KL SD V
Sbjct: 158 ELPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEALLPKL---------SDDKRAWVL 208
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
+ ++ L ++E E +Y + Q L QQLAV+ L WR+ ARA ++
Sbjct: 209 EDGAELVANL-QRESDPEEAYREVK--QAWRLKPQQLAVLKVLTAWRERQARARNQPRNR 265
Query: 377 VLPNRTLIEIAKQLPTTAAKLRRL 400
VL +L +A+ P L R+
Sbjct: 266 VLREASLWPLARTQPCDLVTLARI 289
>gi|88607542|ref|YP_504762.1| putative ribonuclease D [Anaplasma phagocytophilum HZ]
gi|88598605|gb|ABD44075.1| putative ribonuclease D [Anaplasma phagocytophilum HZ]
Length = 381
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 23/226 (10%)
Query: 169 CLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 228
CL+QI+ + V+D L + + P L+E+F + KV H +D+ L F
Sbjct: 42 CLLQIAYENKQCVIDALAEGIDLTP-LQEIFDNTQIFKVFHDCRQDLDALSLLFESLPRP 100
Query: 229 MFDTGQASRVLKLERNSLEY--LLHHFCGVNANKE-YQNADWRVRPLPDEMLRYAREDTH 285
+FDT A+ + + NS+ Y L+ F GV NK ++ DW RPL + +RYA +D
Sbjct: 101 IFDTQIAAMLCEYHENSVGYSKLVEQFLGVKLNKMPFKRVDWSKRPLTESEVRYALDDVI 160
Query: 286 YLLYIYDIMKIKLSSMPKES---ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYG 342
YL +Y I++ L+S + S E D + V Y L S Y
Sbjct: 161 YLYKLYGILRDILTSKGRLSWYMEEMDCIVDSVSDN--------YTTILESMECY----- 207
Query: 343 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 388
A L Q+ + + EWR+ +AR + + ++ R ++ I K
Sbjct: 208 ---ADLTEQEANIARSVVEWRERVARLLNINRNIIMNARDVLNITK 250
>gi|56416471|ref|YP_153545.1| ribonuclease D [Anaplasma marginale str. St. Maries]
gi|56387703|gb|AAV86290.1| ribonuclease D [Anaplasma marginale str. St. Maries]
Length = 401
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 29/229 (12%)
Query: 169 CLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 228
CL+Q++ + VVD L R+ + P L+E+F D KV H +D+ L + F
Sbjct: 46 CLLQMAYQGGQCVVDVLDERLDLSP-LQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRP 104
Query: 229 MFDTGQASRVLKLERNSLEY--LLHHFCGVNANKE-YQNADWRVRPLPDEMLRYAREDTH 285
+FDT AS + + NS+ Y L+ F GV NK ++ DW RPL + +RYA +D
Sbjct: 105 IFDTQTASMLCEYHDNSVGYSKLVEQFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVT 164
Query: 286 YLLYIYDIM------KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLH 339
YL +Y+++ K +L+ +E EN + E + +YD LL +
Sbjct: 165 YLHELYEVLLGILTAKERLTWFLEEMEN----IAEAFVDNYD--------SLLEGMDFF- 211
Query: 340 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 388
L + + + EWR+ +AR + + V+ +++++ K
Sbjct: 212 ------PELGESEAIIARSIIEWREKVARLFNVNRNIVMHSKSVLLATK 254
>gi|326332250|ref|ZP_08198530.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
gi|325949956|gb|EGD42016.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
Length = 422
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 21/210 (10%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
++H A +D+ L D G++ +FDT A R+L R L L+ G KE+ AD
Sbjct: 106 ILHAATQDLPCLS-DLGLHPAALFDTELAGRLLGYPRVGLGTLVETVLGFTMLKEHSAAD 164
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLPD L YA D L+ + + + +L + K++ ++ +D R
Sbjct: 165 WSTRPLPDAWLEYAALDVEVLVELREALAAELVAQGKDAWA---------RQEFDWLRGF 215
Query: 327 ---YEKELLSENSYLH-IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 382
+ S +H + G +G LA V L RD IA+ D + ++P+
Sbjct: 216 EAPVRTDAWRRTSGMHRVRGRRG-------LAAVRELWTERDRIAQQRDVTPSRIIPDAA 268
Query: 383 LIEIAKQLPTTAAKLRRLLKSKHSYIERYM 412
++ A+ LP A L L ERY+
Sbjct: 269 IVAAAQDLPQDKAALLGLKGFHGRGAERYV 298
>gi|111023812|ref|YP_706784.1| ribonuclease III [Rhodococcus jostii RHA1]
gi|397737347|ref|ZP_10504019.1| 3'-5' exonuclease family protein [Rhodococcus sp. JVH1]
gi|110823342|gb|ABG98626.1| probable ribonuclease III [Rhodococcus jostii RHA1]
gi|396926786|gb|EJI94023.1| 3'-5' exonuclease family protein [Rhodococcus sp. JVH1]
Length = 429
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 105/254 (41%), Gaps = 24/254 (9%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVV-DTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+Q+ V+ D + + P L EV + ++H
Sbjct: 55 LAVDAERASGFRYSARAYLVQLRREGAGTVLLDPIPTAADLAP-LAEVIN--PLEWILHS 111
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L + G+ +FDT A R+ ER L ++ G+ K + ADW R
Sbjct: 112 ADQDLPGLA-EIGLAPATLFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAADWSKR 170
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE----SENSDTPLTEVYKRSYDVCRQL 326
PLPD L YA D L+ + ++M +L K E L K D R+
Sbjct: 171 PLPDSWLNYAALDVEVLVELRNVMAAELDEQGKSEWAAQEFEHIRLAGPPKPKADRWRRT 230
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
HI L+ +QLA L + R+ +AR D S VLP+ +I+
Sbjct: 231 S-----------HITSLK----TQRQLAAARSLWQAREDLARKRDVSPSRVLPDAAIIDA 275
Query: 387 AKQLPTTAAKLRRL 400
A + P + LR L
Sbjct: 276 ATKDPRSIEALRAL 289
>gi|357384625|ref|YP_004899349.1| ribonuclease D [Pelagibacterium halotolerans B2]
gi|351593262|gb|AEQ51599.1| ribonuclease D [Pelagibacterium halotolerans B2]
Length = 386
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 119/280 (42%), Gaps = 16/280 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+++ + L+ + D VD E + ++ CL+Q +T ++D L +
Sbjct: 1 MQVITSTRALEAFCKDAATYDFVTVDTEFLRETTYWPKLCLIQAATADRAVIIDPLADDI 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY- 248
+ P+ E+ D KV H A +DI + FG+ +FDT A+ V +S+ Y
Sbjct: 61 DLAPFA-ELLADRHVTKVFHAARQDIEIFVKLFGVVPHPIFDTQVAASVCG-HGDSVSYD 118
Query: 249 -LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
L+ G +K + DW RPL ++ L YA D +L IY ++ ++ + +
Sbjct: 119 NLVRSVVGEQIDKSSRFTDWSHRPLTEKQLNYALADVTHLRDIYGQLRTEIDKTRRGAWV 178
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
+D +Y + ++ K + + + + LA + + WR+ A
Sbjct: 179 ADEMAVLESVDTYVIQPEVAWKRVKARVN------------KPRDLAALQAIAAWRERRA 226
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 407
+ +D+ G +L + + E+A Q PTT +L Y
Sbjct: 227 QENDQPRGRILKDDAIAELAIQRPTTPDAFEKLRAVPRGY 266
>gi|365824673|ref|ZP_09366747.1| hypothetical protein HMPREF0045_00383 [Actinomyces graevenitzii
C83]
gi|365259733|gb|EHM89718.1| hypothetical protein HMPREF0045_00383 [Actinomyces graevenitzii
C83]
Length = 424
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 32/226 (14%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
++H AD+D+ L + G+ +FDT A+R+L E+ L +L+ G + KE+ AD
Sbjct: 94 ILHAADQDMPCLAK-LGMRPDALFDTELAARILGREKRGLGHLIEDTLGWHLAKEHSAAD 152
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIM--------KIKLSSMPKESENSDTPLTEVYKR 318
W VRPLP L YA D L+ + + K++ + E E + P E
Sbjct: 153 WSVRPLPTSWLNYAALDVELLIDLRSALLTELELAGKLQWALAEFEFERTAPPRPE---- 208
Query: 319 SYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVL 378
+ + H++G G A+ A++ L R+ IA+A D VL
Sbjct: 209 --------------RVDPWRHMHG-AGRVTTARGRAILRNLWLTREEIAKAQDLPPVKVL 253
Query: 379 PNRTLIEIAKQLPTTAAKLR--RLLKSK--HSYIERYMGPVLSIIK 420
P+ ++ +AK++P + +LR R + S+ +Y+E++ V S +K
Sbjct: 254 PHYAIVAVAKRMPNSRKQLRAIREMSSRDARAYMEQWWKAVDSAMK 299
>gi|315604318|ref|ZP_07879384.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310]
gi|315314024|gb|EFU62075.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310]
Length = 414
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 127/293 (43%), Gaps = 42/293 (14%)
Query: 123 PSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTED--- 179
P++ TP L + K L A + A+D+E Q + L+QI R ED
Sbjct: 28 PAIVDTPSGLDDAAKALALGRAPV------ALDVERAQGFRYGSDPYLVQI--RREDVGT 79
Query: 180 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 239
F++DT L P L + ++H +D+ L R G+ ++FDT A+R++
Sbjct: 80 FLIDTHAL-----PDLSALAPGVDDVWLLHDCLQDLPNL-RQVGLVPSSLFDTEIAARLV 133
Query: 240 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
LER L + G+ K++Q +DW +RPLP E LRYA D L +Y + +L
Sbjct: 134 GLERFGLAAVAEQVLGLGLVKDHQASDWSLRPLPPEWLRYAALDVELLTELYYRLSKRLD 193
Query: 300 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYL---HIYGLQGAG--LNAQQLA 354
M + ++ +Q + L S L GAG + + LA
Sbjct: 194 QMGR----------------WEWAQQEFSHALSVRPSPAKPDRWRSLPGAGKVRSRRGLA 237
Query: 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 407
V+ L E R+ IAR D S G ++ N L+ A P RR L S + +
Sbjct: 238 VLQALWETREEIARRVDISPGRLVRNAALVRAASAPPRN----RRALMSINEF 286
>gi|311064600|ref|YP_003971325.1| ribonuclease D [Bifidobacterium bifidum PRL2010]
gi|310866919|gb|ADP36288.1| Ribonuclease D [Bifidobacterium bifidum PRL2010]
Length = 428
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 8/180 (4%)
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
D G+ +FDT A+R+L L R L + H+ GV KE+ ADW RPLP + YA
Sbjct: 108 DIGLTPQALFDTEIAARMLGLHRFGLAAVTEHYLGVTLAKEHSAADWSYRPLPRDWRNYA 167
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 340
D L+ + M+ +L + K+ +D + R+ +L I
Sbjct: 168 ALDVELLIELRRKMQRELKAQGKDGW-ADEEFRYALQTGMGPRRE-------HPVPWLRI 219
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ + Q LAV L E RD +ARA D + G +L + +++E A + P A + R +
Sbjct: 220 SHINTVSQDHQGLAVAKALWEKRDELARAYDIAPGLLLSDDSIVEAASRKPRNAREFRMI 279
>gi|171742685|ref|ZP_02918492.1| hypothetical protein BIFDEN_01799 [Bifidobacterium dentium ATCC
27678]
gi|283456244|ref|YP_003360808.1| ribonuclease D [Bifidobacterium dentium Bd1]
gi|171278299|gb|EDT45960.1| 3'-5' exonuclease [Bifidobacterium dentium ATCC 27678]
gi|283102878|gb|ADB09984.1| Ribonuclease D [Bifidobacterium dentium Bd1]
Length = 433
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 102/238 (42%), Gaps = 34/238 (14%)
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
D G+ ++FDT A+R+L + R L + HF G+ KE+ ADW RPLP + YA
Sbjct: 111 DLGMEPHHLFDTEIAARLLGMHRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYA 170
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE-----KELLSEN 335
D L+ + M+ +L K + + L+E KE
Sbjct: 171 ALDVELLIELEQRMRTELKRQGKRDWAEE-----------EFAYALHEGMGPRKE--HPV 217
Query: 336 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 395
+L I + + Q LAV L E RD +AR D + +L + ++IE AK+ P AA
Sbjct: 218 PWLRISRITEIAKDRQALAVAKALWEKRDELARRFDIAPALLLSDFSIIEAAKRKPHNAA 277
Query: 396 KLRRLLK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 442
+ R + ++ ERY P+ +K S+ + VI Q L R E
Sbjct: 278 QFRAIRSINERVRIQSDAAQEKMFERY-APIQRKVKPSLWKS----VIQQALDMPRSE 330
>gi|260366009|ref|ZP_05778494.1| ribonuclease D [Vibrio parahaemolyticus K5030]
gi|308111259|gb|EFO48799.1| ribonuclease D [Vibrio parahaemolyticus K5030]
Length = 292
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 121/269 (44%), Gaps = 14/269 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ + KDL+++ A+ + D +D E + R+F L+Q+ ++D +L
Sbjct: 19 YQIITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDPTEL-T 77
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
+ ++ E+ KD + KV+H D+ Q FG M DT + L ++
Sbjct: 78 DMTSFI-ELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFAT 136
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ + GV +K DW RPL + L YA D HYLL +Y+ + K+ +
Sbjct: 137 LVEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKV---------T 187
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
+ E ++ D+ +E EN+YL I G L +LAV+ L WR A
Sbjct: 188 EAGWWEAVQQESDLLVSKRIRETNEENAYLDIKG--AWQLKPSELAVLKPLATWRYREAI 245
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
D + ++ L+ +A+ T+ K+
Sbjct: 246 KRDLALNFIFKEGDLLTVARLGLTSFKKM 274
>gi|167646508|ref|YP_001684171.1| ribonuclease D [Caulobacter sp. K31]
gi|167348938|gb|ABZ71673.1| ribonuclease D [Caulobacter sp. K31]
Length = 389
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 145 KLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTK 204
+LK AVD E + ++ CL+Q+++ + +D L + + P L E+ +DP
Sbjct: 16 ELKGQPFIAVDTEFMRETTYWPKLCLIQVASPDIEACIDPLAEGMDLEPLL-EILRDPGV 74
Query: 205 KKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQ 263
KV H A +D+ + + +FDT A E+ + + L+ + +K +
Sbjct: 75 LKVFHAARQDVE-IFNNLNAMPTPLFDTQVAGMAAGFGEQIAYDALVRQMLKIELDKSSR 133
Query: 264 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC 323
DW RPL D L YA D +L ++ I++ +L + + + +YDV
Sbjct: 134 FTDWARRPLSDAQLTYAVADVTHLATLFPILRERLEKAGRLAWVEEEMKALNDPAAYDVD 193
Query: 324 RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 383
+ + L + ++ LAV + WR+ A+ D+ G +L + +
Sbjct: 194 PEKAWRRLRPRKT------------GSKYLAVFKAVAAWRERTAQTRDQPRGRILKDEAI 241
Query: 384 IEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 414
E+A Q PT+ L L + GP
Sbjct: 242 DELATQAPTSLEGLNTLRSVPKGFGGSKFGP 272
>gi|385652990|ref|ZP_10047543.1| ribonuclease D [Leucobacter chromiiresistens JG 31]
Length = 396
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 117/270 (43%), Gaps = 23/270 (8%)
Query: 153 AVDLEHNQYRSFLGLTCLMQISTRTE--DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + G L+Q+ R E F++D + + P R + + + H
Sbjct: 36 AVDAERASGFRYGGEAYLVQVH-RAEAGTFLIDPIGI-PDFSPLQRAIGD---AEWIFHA 90
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
A +D+ L G+ +FDT A+R+L ER L ++ G+ K + ADW R
Sbjct: 91 ASQDLPCLA-SIGLVPSRIFDTELAARLLGFERVGLGAIVEMLLGIALEKAHSAADWSQR 149
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLP E L YA D L + ++ +L K TE + ++ R EK
Sbjct: 150 PLPAEWLEYAALDVVLLPELRSVIAEQLDEQGK---------TEFAAQEFEAVRLRPEKP 200
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
E + + G A + LA+ L E RD +AR D + G ++P+ +++ +
Sbjct: 201 -RPEEPWRKLSG-SHALKTPRALALARELWEARDALARERDTAPGRLIPDSSIVAASIAN 258
Query: 391 PTTAAKLRRLL----KSKHSYIERYMGPVL 416
P + L RL ++ S ++R+ +L
Sbjct: 259 PRSPGDLARLRDFKGRASRSELKRWWAAIL 288
>gi|381404322|ref|ZP_09929006.1| ribonuclease D [Pantoea sp. Sc1]
gi|380737521|gb|EIB98584.1| ribonuclease D [Pantoea sp. Sc1]
Length = 373
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 123/282 (43%), Gaps = 24/282 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ L+++ L ++ K + A+D E + R++ L+Q+ + ++D L +R
Sbjct: 3 YSLIDQDDQLADVCQKARQHAAVALDTEFVRTRTYYPQLGLIQLFDDEQLVLIDPLNIR- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDI-VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
P++ + D K +H D+ V+L R FG+ M DT Q + S +
Sbjct: 62 DWSPFV-ALLTDTAVTKFLHAGGEDLEVFLHR-FGVLPTPMIDT-QILAAFSGQPLSWGF 118
Query: 249 --LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++ HF V +K DW RPL + YA D HYLL I + + +E+
Sbjct: 119 AAMVAHFTQVELDKSESRTDWLARPLTERQCVYAAADVHYLLPIARQLMVN----TEEAG 174
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLS---ENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
N L+E C L ++ L S E ++ I L +QLA + L WR
Sbjct: 175 NMAAALSE--------CDNLCQRRLDSLAPEEAWRDITN--AWQLRPRQLAALQRLAAWR 224
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 405
+AR D + +V+ L ++A+ +P + +L L S H
Sbjct: 225 LTLAREKDMAVNFVVREENLWKVARFMPGSLGELDHLGLSGH 266
>gi|409390093|ref|ZP_11241864.1| ribonuclease D [Gordonia rubripertincta NBRC 101908]
gi|403199920|dbj|GAB85098.1| ribonuclease D [Gordonia rubripertincta NBRC 101908]
Length = 427
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 120/274 (43%), Gaps = 16/274 (5%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+QI R + F++D + + P + + + P + V+H
Sbjct: 55 IAVDTERASGYRYSQRAYLIQIKRRGSGSFLLDPIGDPEALAPVI-DALRGP--EWVLHA 111
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L R+ G ++DT A R+L L + +L ++ F G+ K + ADW R
Sbjct: 112 ADQDLPCL-RELGFECVELYDTELAGRLLGLAKVNLAAMVAQFLGLGLLKGHGAADWSRR 170
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLPD+ L YA D L+ + D M L+ K+ + V R R +
Sbjct: 171 PLPDDWLNYAALDVEVLVELRDAMDAALAESGKDGWAREE-FAYVLSRPPAPPR----TD 225
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+ S +H +A+ LA V L R+ +A D + G VLP+ ++ A
Sbjct: 226 RWRKTSNIHTVK------SARALAAVRELWTAREELAERRDVAPGRVLPDTAIVNAATVD 279
Query: 391 PTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 424
P + +L RL R G LS ++ + +
Sbjct: 280 PKSNNELTRLPIFGGPRQRRQAGIWLSALQRARE 313
>gi|303232226|ref|ZP_07318925.1| ribonuclease D [Atopobium vaginae PB189-T1-4]
gi|302481636|gb|EFL44697.1| ribonuclease D [Atopobium vaginae PB189-T1-4]
Length = 437
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 120/265 (45%), Gaps = 16/265 (6%)
Query: 138 DLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLRE 197
+LK A + A+D E + +++ CL+Q++T T+ VVD L L
Sbjct: 69 ELKAFCAHVAQEGCVAIDTEFIREKTYYPQLCLIQMATHTQSAVVDPLACSSLCD--LAC 126
Query: 198 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCG 255
+ +D + KV +DI L G+ N+FD A+ L R L Y L+ G
Sbjct: 127 LLEDKSIIKVFFACSQDIEVLYDALGVVPKNVFDAQLAAAFLGY-RYQLGYGALVEAMVG 185
Query: 256 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 315
V+ K DW +RPL +E L+YA +D Y +Y ++ +L+ N T
Sbjct: 186 VHLPKTQALTDWSLRPLTEEQLKYAADDVIYQPQMYTLLVRELT-----RTNRYAWFTHE 240
Query: 316 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 375
K++ D L ++ ++ HI + L +QLA+ + WRD +AR +
Sbjct: 241 MKQTLD--DMLQRRD--PAQAFRHIKRVN--NLTRKQLAIAKEVALWRDDVARGRNVPRK 294
Query: 376 YVLPNRTLIEIAKQLPTTAAKLRRL 400
++L + +IE+ K PTT + R+
Sbjct: 295 WILSDEVVIELCKLAPTTKNRALRI 319
>gi|342179229|sp|B8EN54.2|RND_METSB RecName: Full=Ribonuclease D; Short=RNase D
Length = 399
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 117/272 (43%), Gaps = 20/272 (7%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
L+ + L E+ +L S VD E + +F C++Q+++ E VD L +
Sbjct: 1 MSLITTTEALAEVCQRLASHAFVTVDTEFLRETTFWPKLCVVQLASADEAVAVDALASGL 60
Query: 190 QVGPYLREVFKDPTKKKVMHGA--DRDIVW-LQRDFGIYLCNMFDTGQASRVLKL-ERNS 245
+ P L E+ DP KV H A D +IVW L + I +FDT A+ V ++ S
Sbjct: 61 DLAP-LFELMADPAVVKVFHAARQDLEIVWNLAK---IIPAPLFDTQVAAMVCGFGDQVS 116
Query: 246 LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES 305
L+ C V+ +K + DW RPL + YA D YL IY I++ KL +
Sbjct: 117 YGDLVQTVCKVSLDKSSRFTDWSRRPLLPAQVDYAIADVTYLRDIYAILQDKLKETGRLG 176
Query: 306 ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
SD +Y E +N++ + + L V+ + WR+
Sbjct: 177 WLSDEMALLTSPATY---------EQHPDNAWER---FRNRVRKPRDLGVLMEVAGWREA 224
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
A+A D +L + LIE+A P +A L
Sbjct: 225 EAQARDVPRSRILKDDVLIELALAAPRSADAL 256
>gi|346992816|ref|ZP_08860888.1| ribonuclease D [Ruegeria sp. TW15]
Length = 385
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 126/274 (45%), Gaps = 24/274 (8%)
Query: 140 KELAAKLKSVDEF---AVDLEHNQYRSFLGLTCLMQISTRTED----FVVDTLKLRVQVG 192
+ELAA + ++ VD E + R++ CL+Q++ +ED +VD L + +
Sbjct: 8 QELAAFCTAAAQYPYVTVDTEFLRERTYYSKLCLVQLAVPSEDEGSAVLVDPLAEDLSLE 67
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLH 251
P L ++F++ + KV H A +D+ D G++ +FDT A+ V E+ E L+
Sbjct: 68 P-LYDLFRNESVVKVFHAARQDLEIFWVDAGVFPTPLFDTQVAAMVCGFGEQVGYETLVR 126
Query: 252 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP 311
C +K + DW RPL D YA D +L IY+ + +L + ++ +
Sbjct: 127 KICREGVDKTSRFTDWSRRPLTDAQKTYALADVTHLRKIYEHLSTELKNSKRDHWVVEEL 186
Query: 312 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 371
+YD+ + + + + + +A+ LAVV L ++R+ A+ ++
Sbjct: 187 RILTRPETYDIRPEEAWRRVKTRTN------------SAKFLAVVKELAQFREAHAQENN 234
Query: 372 ESTGYVLPNRTLIEIAKQLPTTAAKL---RRLLK 402
V + LIE+A P T + L R LL+
Sbjct: 235 VPRSRVFKDDALIEMASTKPKTPSDLGGSRLLLR 268
>gi|306822549|ref|ZP_07455927.1| ribonuclease D [Bifidobacterium dentium ATCC 27679]
gi|304554094|gb|EFM42003.1| ribonuclease D [Bifidobacterium dentium ATCC 27679]
Length = 433
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 102/238 (42%), Gaps = 34/238 (14%)
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
D G+ ++FDT A+R+L + R L + HF G+ KE+ ADW RPLP + YA
Sbjct: 111 DLGMEPHHLFDTEIAARLLGMHRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYA 170
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE-----KELLSEN 335
D L+ + M+ +L K + + L+E KE
Sbjct: 171 ALDVELLIELEQRMRTELKRQGKRDWAEE-----------EFTYALHEGMGPRKE--HPV 217
Query: 336 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 395
+L I + + Q LAV L E RD +AR D + +L + ++IE AK+ P AA
Sbjct: 218 PWLRISRITEIAKDRQALAVAKALWEKRDELARRFDIAPALLLSDFSIIEAAKRKPHNAA 277
Query: 396 KLRRLLK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 442
+ R + ++ ERY P+ +K S+ + VI Q L R E
Sbjct: 278 QFRAIRSINERVRIQADAAQEKMFERY-APIQRKVKPSLWKS----VIQQALDMPRSE 330
>gi|365538247|ref|ZP_09363422.1| ribonuclease D [Vibrio ordalii ATCC 33509]
Length = 371
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 134/301 (44%), Gaps = 17/301 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ + DL+ + D +D E + R+F L+Q+ ++D L
Sbjct: 3 YQIITQPNDLQRACLAARDADVVMLDTEFVRVRTFYPQLGLIQLYDGENLSLIDPLAFD- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
+ P++ E+ +D + KV+H D+ FG M DT + L ++
Sbjct: 62 DMAPFV-ELLQDTSVLKVLHACGEDLEVFHNAFGCTPFPMVDTQVMAAFLGHGLSTGFAA 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM-PKESEN 307
L++ F G+ +K DW RPL + L YA D YLL IY+ + K++ ++
Sbjct: 121 LVNEFLGIEVDKSESRTDWLARPLSQKQLDYAAADVFYLLPIYEKLLDKVTQAGWWQAAQ 180
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
++ L V KR K+ + +YL I G L Q+LA++ L WR A
Sbjct: 181 QESELLSV-KRI---------KQTHPDLAYLDIKG--AWQLTPQELAILKPLATWRYEEA 228
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 427
D + +V+ L+ IA+ T+A+++ S I+R+ +++++K Q A
Sbjct: 229 VRRDLALNFVVKETDLLTIARLGLTSASRMIDAGADPRS-IQRHSAKIIALVKAGQQTPA 287
Query: 428 N 428
+
Sbjct: 288 D 288
>gi|325277926|ref|ZP_08143467.1| ribonuclease D [Pseudomonas sp. TJI-51]
gi|324096941|gb|EGB95246.1| ribonuclease D [Pseudomonas sp. TJI-51]
Length = 377
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 28/273 (10%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L E +D ++L AVD E + +F L+QI F++D L +
Sbjct: 14 LAEHCRDWQQLPF-------VAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLL----I 62
Query: 192 GPY--LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY- 248
G + L E+ ++ KV+H D+ L R G +FDT A+ L L S+ Y
Sbjct: 63 GNWQPLAELLENSGVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLG-FSMGYS 121
Query: 249 -LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
L+ G++ K +DW RPL D + YA ED +L ++ +++ P+ S++
Sbjct: 122 RLVQEVLGIDLPKGETRSDWLQRPLSDTQVSYAAEDAVHLAELFTVLR------PRLSDD 175
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
+ E R+ E L + L L QQLAV+ LC WR+ A
Sbjct: 176 KYAWVLEDGAELVAALRREVEPATLYRDVKL------AWKLAPQQLAVLRELCAWRERTA 229
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
R+ D VL +L IAK P+ + L ++
Sbjct: 230 RSRDVPRNRVLKEHSLWPIAKNQPSNLSALAKV 262
>gi|319408646|emb|CBI82301.1| Ribonuclease D [Bartonella schoenbuchensis R1]
Length = 383
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 14/278 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
K++ + +L+ A L + D VD E + +F CL+Q+++ ++D + +
Sbjct: 1 MKVITQTTELEIAIAALSNSDFVTVDTEFIRETTFWPQLCLIQLASPNVTMLIDPMVPDI 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEY 248
+ + ++ D KV H A +DI + GI +FDT A + + S +
Sbjct: 61 DLQSFF-DLMVDEKIVKVFHAARQDIETIYHLGGIIPYPLFDTQIAGSICGFGDSISYDQ 119
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
++ G + +K + DW RPL ++ L YA D YL +Y +K KL +
Sbjct: 120 IVQRCTGHHLDKSSRFTDWSHRPLSEKQLLYALADVTYLRDVYLSLKKKLEKNKRTHWMD 179
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
D + +YD+ E+++ + G A ++LAV+ + WR+ AR
Sbjct: 180 DELEILLTPTTYDIP---------EEDAWKKVKGKVKA---PRELAVLQKVAAWREREAR 227
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 406
+ +++ + LIE+A Q P +L+RL K S
Sbjct: 228 KHNVPRRHIMKDECLIELAIQQPKDELELKRLRSLKKS 265
>gi|152965548|ref|YP_001361332.1| 3'-5' exonuclease [Kineococcus radiotolerans SRS30216]
gi|151360065|gb|ABS03068.1| 3'-5' exonuclease [Kineococcus radiotolerans SRS30216]
Length = 427
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 12/187 (6%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A++D+ L + G+ +FDT SR+ L R L ++ G+ KE+ D
Sbjct: 104 VLHAANQDLPCLA-EVGMRPTRLFDTELGSRIAGLPRVGLGAVVEELLGLRLAKEHSAVD 162
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP+ L YA D L+ + D + +L++ K E + D +
Sbjct: 163 WSTRPLPEPWLTYAALDVEVLVQVRDALAERLAAQGKLEWA-----LEEFAAVADAPAPV 217
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
E S LH A + +QLAVV L + RD AR D S G +LP+ ++
Sbjct: 218 PPAEPWRRVSGLH------AVRSRRQLAVVRALWQARDEEARRRDTSPGRLLPDSAIVAA 271
Query: 387 AKQLPTT 393
A+ P T
Sbjct: 272 ARATPRT 278
>gi|433603682|ref|YP_007036051.1| 3'-5' exonuclease [Saccharothrix espanaensis DSM 44229]
gi|407881535|emb|CCH29178.1| 3'-5' exonuclease [Saccharothrix espanaensis DSM 44229]
Length = 428
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 100/234 (42%), Gaps = 38/234 (16%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A +D+ L + + +FDT A R+ ER +L L+ G K + AD
Sbjct: 103 VLHAASQDLPCLA-ELDLRPSVLFDTELAGRLAGFERVALGTLVERLLGYRLEKGHGAAD 161
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK------ESENSDT-----PLTEV 315
W RPLP + L YA D L+ + D+++ +L K E E + T P E
Sbjct: 162 WSRRPLPADWLNYAALDVELLVELRDVLEAELKKQGKLEWALEEFEAARTAPLPKPRAEP 221
Query: 316 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 375
++R+ + R + +QLA V L E RD +AR D + G
Sbjct: 222 WRRTSGIHRI----------------------RSPRQLAAVRSLWETRDALARERDIAPG 259
Query: 376 YVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANF 429
VLP+ L+E A + P A L L + R ++++ ++Q AA
Sbjct: 260 RVLPDSALVEAAVRNPPDEAGLLALPVFRGRAQRR----MVAVWLGALQRAAAL 309
>gi|359767832|ref|ZP_09271614.1| putative ribonuclease [Gordonia polyisoprenivorans NBRC 16320]
gi|359314748|dbj|GAB24447.1| putative ribonuclease [Gordonia polyisoprenivorans NBRC 16320]
Length = 428
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 105/230 (45%), Gaps = 16/230 (6%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQIS-TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
A+D E + L+QI T F++D ++ + P + + +P + ++H
Sbjct: 54 VALDTERASGYRYSQRAYLIQIRRTGAGSFLLDPIEEPEALRPVI-DALAEP--EWILHA 110
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L R+ G + +FDT A R+L L + +L ++ F G K + ADW R
Sbjct: 111 ADQDLPCL-RELGFHATTLFDTELAGRLLGLTKVNLAAMVEQFLGFGLQKGHGAADWSKR 169
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLP E L YA D L+ + D M L +++ SD E +Y + R
Sbjct: 170 PLPAEWLNYAALDVEVLIELRDAMDAAL----RDAGKSDWAAEEF---AYVLRRPPSPPR 222
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 380
+I+ ++ A+ LA V L R+ IA+ D + G VLP+
Sbjct: 223 TDRWRRTANIHTVK----TARGLAAVRELWSAREEIAQRRDVAPGRVLPD 268
>gi|309801464|ref|ZP_07695591.1| 3'-5' exonuclease [Bifidobacterium dentium JCVIHMP022]
gi|308221979|gb|EFO78264.1| 3'-5' exonuclease [Bifidobacterium dentium JCVIHMP022]
Length = 430
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 102/238 (42%), Gaps = 34/238 (14%)
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
D G+ ++FDT A+R+L + R L + HF G+ KE+ ADW RPLP + YA
Sbjct: 108 DLGMEPHHLFDTEIAARLLGMHRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYA 167
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE-----KELLSEN 335
D L+ + M+ +L K + + L+E KE
Sbjct: 168 ALDVELLIELEQRMRTELKRQGKRDWAEE-----------EFTYALHEGMGPRKE--HPV 214
Query: 336 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 395
+L I + + Q LAV L E RD +AR D + +L + ++IE AK+ P AA
Sbjct: 215 PWLRISRITEIAKDRQALAVAKALWEKRDELARRFDIAPALLLSDFSIIEAAKRKPHNAA 274
Query: 396 KLRRLLK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 442
+ R + ++ ERY P+ +K S+ + VI Q L R E
Sbjct: 275 QFRAIRSINERVRIQADAAQEKMFERY-APIQRKVKPSLWKS----VIQQALDMPRSE 327
>gi|410089289|ref|ZP_11285915.1| ribonuclease D [Pseudomonas viridiflava UASWS0038]
gi|409763576|gb|EKN48536.1| ribonuclease D [Pseudomonas viridiflava UASWS0038]
Length = 377
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 123/273 (45%), Gaps = 20/273 (7%)
Query: 133 VEEVKDLKELA---AKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ ++D LA A+ +++ A+D E + +F + L+QI + +++D L +
Sbjct: 5 IHWIRDDDSLALHCAQWQTLPFVALDTEFMRVDTFYPIAALLQIGDGSRAWLIDPLLIND 64
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY- 248
L + ++P KV+H D+ L R G +FDT A+ L L S+ Y
Sbjct: 65 WTP--LSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLG-FSMGYS 121
Query: 249 -LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
L+ ++ K +DW RPL + + YA ED +L ++ I++ +LS E
Sbjct: 122 RLVQEVLNIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFTILRPRLS-----DEK 176
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
L + + ++ R++ E+ E L+ QLAV+ GLC WR+V A
Sbjct: 177 FAWLLEDGAELVANLRREIDPYEVYREAKL-------AWKLSRAQLAVLRGLCAWREVQA 229
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
RA + ++ +L +AK P L R+
Sbjct: 230 RARNVPRNRIVREHSLWPLAKTQPDNLGALARI 262
>gi|291456557|ref|ZP_06595947.1| ribonuclease D [Bifidobacterium breve DSM 20213 = JCM 1192]
gi|291381834|gb|EFE89352.1| ribonuclease D [Bifidobacterium breve DSM 20213 = JCM 1192]
Length = 433
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
D G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 DLGLQPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 340
D L+ + ++M+ L + K+ E ++ T R+ + +L I
Sbjct: 172 ALDVEVLIELENLMRRDLRAAGKD-EWAEEEFTHALSEGL-APRKPHPV------PWLRI 223
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ + Q LA+ L + RD +AR D + +L + ++IE A + P AA+ R L
Sbjct: 224 SRITQLSRDPQGLAIAKSLWQERDKLARQHDIAPSLLLSDSSIIEAATRKPHNAAQFRAL 283
>gi|417943263|ref|ZP_12586515.1| Ribonuclease D [Bifidobacterium breve CECT 7263]
gi|376165800|gb|EHS84740.1| Ribonuclease D [Bifidobacterium breve CECT 7263]
Length = 433
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
D G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 DLGLQPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 340
D L+ + ++M+ L + K+ E ++ T R+ + +L I
Sbjct: 172 ALDVEVLIELENLMRRDLRAAGKD-EWAEEEFTHALSEGL-APRKPHPV------PWLRI 223
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ + Q LA+ L + RD +AR D + +L + ++IE A + P AA+ R L
Sbjct: 224 SRITQLSRDPQGLAIAKSLWQERDKLARQHDIAPSLLLSDSSIIEAATRKPHNAAQFRAL 283
>gi|163803649|ref|ZP_02197513.1| cell division topological specificity factor MinE [Vibrio sp. AND4]
gi|159172559|gb|EDP57420.1| cell division topological specificity factor MinE [Vibrio sp. AND4]
Length = 372
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 131/301 (43%), Gaps = 17/301 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++++ KDL+E+ A + D +D E + R+F L+Q+ + ++D +L
Sbjct: 3 YQIIKKNKDLEEVCALAREADVVMLDTEFVRIRTFYPQLGLIQLFDGKQLSLIDPTELTD 62
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
E+ +D + KV+H D+ Q FG M DT + L ++
Sbjct: 63 MTS--FVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFAT 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM-PKESEN 307
L+ + GV +K DW RPL + L YA D HYL+ +Y+ + K++ E+
Sbjct: 121 LVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVNQAGWWEAVQ 180
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
++ L V KR D+ EN YL I G L +LA++ L WR A
Sbjct: 181 QESDLL-VSKRIRDIN---------DENVYLDIKG--AWQLRPAELAILKPLATWRYREA 228
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 427
D + ++ L+ +A+ T K+ S I R+ + I+K + Q A
Sbjct: 229 IKRDLALNFIFKEGDLLTVARLGLTGFQKMEAEGMDVRS-INRHGAKIAGIVKQAKQTPA 287
Query: 428 N 428
+
Sbjct: 288 D 288
>gi|339479014|gb|ABE95475.1| Ribonuclease D [Bifidobacterium breve UCC2003]
Length = 433
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
D G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 DLGLQPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 340
D L+ + ++M+ L + K+ E ++ T R+ + +L I
Sbjct: 172 ALDVEVLIELENLMRRDLRAAGKD-EWAEEEFTHALSEGL-APRKPHPV------PWLRI 223
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ + Q LA+ L + RD +AR D + +L + ++IE A + P AA+ R L
Sbjct: 224 SRITQLSRDPQGLAIAKSLWQERDKLARQHDIAPSLLLSDSSIIEAATRKPHNAAQFRAL 283
>gi|39936108|ref|NP_948384.1| ribonuclease D [Rhodopseudomonas palustris CGA009]
gi|39649962|emb|CAE28486.1| ribonuclease D [Rhodopseudomonas palustris CGA009]
Length = 392
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 119/272 (43%), Gaps = 18/272 (6%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + L + A+L VD E + +F L C++Q+++ E V+D L + +
Sbjct: 3 LISTSEQLADACARLARHPVITVDTEFLRETTFYPLLCVVQMASAEEALVIDALADGIDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--L 249
P+ ++ + KV H A +DI + GI +FDT A+ VL +S+ Y L
Sbjct: 63 KPFF-DLMANEQVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVLGYG-DSIAYDQL 120
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ G +K ++ DW RPL E + YA D +L ++ + L + S+
Sbjct: 121 VERITGHRPDKTHRFTDWSRRPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDWVSE 180
Query: 310 TPLTEVYKRSYDVC-RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
+YDV + +E+ L+ ++LAV+ + WR+ A+
Sbjct: 181 EMEVLTSPSTYDVHPERAWER-------------LKTRVRKPKELAVLMEIAAWREQEAQ 227
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ D VL + L +IA PT+ KL L
Sbjct: 228 SRDVPRSRVLKDDALGDIATHAPTSLEKLANL 259
>gi|192291826|ref|YP_001992431.1| ribonuclease D [Rhodopseudomonas palustris TIE-1]
gi|192285575|gb|ACF01956.1| ribonuclease D [Rhodopseudomonas palustris TIE-1]
Length = 392
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 119/272 (43%), Gaps = 18/272 (6%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + L + A+L VD E + +F L C++Q+++ E V+D L + +
Sbjct: 3 LISTSEQLADACARLARHPVITVDTEFLRETTFYPLLCVVQMASAEEALVIDALADGIDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--L 249
P+ ++ + KV H A +DI + GI +FDT A+ VL +S+ Y L
Sbjct: 63 KPFF-DLMANEQVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVLGYG-DSIAYDQL 120
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ G +K ++ DW RPL E + YA D +L ++ + L + S+
Sbjct: 121 VERITGHRPDKTHRFTDWSRRPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDWVSE 180
Query: 310 TPLTEVYKRSYDVC-RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
+YDV + +E+ L+ ++LAV+ + WR+ A+
Sbjct: 181 EMEVLTSPSTYDVHPERAWER-------------LKTRVRKPKELAVLMEIAAWREQEAQ 227
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ D VL + L +IA PT+ KL L
Sbjct: 228 SRDVPRSRVLKDDALGDIATHAPTSLEKLANL 259
>gi|114704849|ref|ZP_01437757.1| probable ribonuclease d protein [Fulvimarina pelagi HTCC2506]
gi|114539634|gb|EAU42754.1| probable ribonuclease d protein [Fulvimarina pelagi HTCC2506]
Length = 383
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 112/248 (45%), Gaps = 14/248 (5%)
Query: 154 VDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADR 213
VD E + +F CL+Q+++ + +VD L + + P+ + D + KV H A +
Sbjct: 25 VDTEFIRETTFWPELCLIQMASDDTEVLVDPLAKGLSLDPFF-ALMADESVVKVFHAARQ 83
Query: 214 DIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPL 272
D+ + + + +FDT A+ V E + + L+ +K + DWR RPL
Sbjct: 84 DLEIVYKLGAVIPKPLFDTQIAAMVCGFGESIAYDQLVARLTDGRIDKSSRFTDWRHRPL 143
Query: 273 PDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL 332
D+ L YA D +L +Y +K +L + S + ++YD L
Sbjct: 144 SDKQLTYALADVTHLRDVYKALKAQLEETSRHSWLDEEMAILADPQTYD---------LH 194
Query: 333 SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 392
++++ + + Q L VA WR+ AR++D G +L + + EIA+Q P
Sbjct: 195 PDDAWRRMKMRVKKPIELQILKEVAA---WREREARSNDRPRGRILKDDAIYEIAQQKPA 251
Query: 393 TAAKLRRL 400
+ A L RL
Sbjct: 252 SEADLGRL 259
>gi|421734277|ref|ZP_16173355.1| ribonuclease D [Bifidobacterium bifidum LMG 13195]
gi|407077784|gb|EKE50612.1| ribonuclease D [Bifidobacterium bifidum LMG 13195]
Length = 428
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 8/180 (4%)
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
D G+ +FDT A+R+L L R L + H+ GV KE+ ADW RPLP + YA
Sbjct: 108 DIGLTPQALFDTEIAARMLGLHRFGLAAVTEHYLGVTLAKEHSAADWSYRPLPRDWRNYA 167
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 340
D L+ + M+ +L + K+ +D + R+ +L I
Sbjct: 168 ALDVELLIELRRKMQRELKAQGKDGW-ADEEFRYALQTGMGPRRE-------HPVPWLRI 219
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ + Q LAV L E RD +ARA D + G +L + +++E A + P A R +
Sbjct: 220 SHINTVSQDHQGLAVAKALWEKRDELARAYDIAPGLLLSDDSIVEAASRKPRNARAFRMI 279
>gi|386020022|ref|YP_005938046.1| ribonuclease D [Pseudomonas stutzeri DSM 4166]
gi|327479994|gb|AEA83304.1| ribonuclease D [Pseudomonas stutzeri DSM 4166]
Length = 374
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 117/264 (44%), Gaps = 17/264 (6%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L L A+ + + AVD E + +F + L+Q+ +++D L +R P+ +
Sbjct: 14 LARLCAEWRQLPFVAVDTEFMRVDTFYPIAGLVQVGDGRRAYLIDPLAVR-DWHPF-ATL 71
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGV 256
D KV+H D+ L R G +FDT A+ L + S+ Y L+ G+
Sbjct: 72 LDDAAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIG-FSMGYSRLVQAVLGI 130
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
K +DW RPL + +RYA ED +L +Y+ + KL SD V
Sbjct: 131 ELPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEALLPKL---------SDDKRAWVL 181
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
+ ++ L ++E E +Y + Q L QQLAV+ L WR+ ARA ++
Sbjct: 182 EDGAELVANL-QRESDPEEAYREVK--QAWRLKPQQLAVLKVLTAWRERQARARNQPRNR 238
Query: 377 VLPNRTLIEIAKQLPTTAAKLRRL 400
VL +L +A+ P L R+
Sbjct: 239 VLREASLWPLARTQPCDLVTLARI 262
>gi|395778089|ref|ZP_10458602.1| ribonuclease D [Bartonella elizabethae Re6043vi]
gi|423715652|ref|ZP_17689876.1| ribonuclease D [Bartonella elizabethae F9251]
gi|395418398|gb|EJF84725.1| ribonuclease D [Bartonella elizabethae Re6043vi]
gi|395429779|gb|EJF95840.1| ribonuclease D [Bartonella elizabethae F9251]
Length = 384
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 126/286 (44%), Gaps = 14/286 (4%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + DL+ L++ D VD E + +F CL+Q+++ ++D + + +
Sbjct: 4 LITQTTDLEIALNALRTSDFVTVDTEFIRETTFWPQLCLIQLASPDVTVLIDPIAPDIDL 63
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
+ ++ D KV H A +DI + G+ +FDT A + + S + ++
Sbjct: 64 QAFF-DLMIDKKIVKVFHSARQDIETIYYLGGVIPSPLFDTQIAGSICGFGDSISYDQIV 122
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G + +K + DW RPL ++ L YA D +L +Y ++K +L + D
Sbjct: 123 QRCTGHHLDKSSRFTDWSCRPLSEKQLLYAVADVTHLRDVYLLLKKRLEKNQRTHWMDDE 182
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ ++YD + E E + G ++LAV+ + WR+ AR
Sbjct: 183 ITILLNPKTYD----MPEDEAWKKVK--------GKVKKPRELAVLQKIAAWREREARKH 230
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVL 416
+ +++ + LIEIA Q P + L+RL ++ +R M L
Sbjct: 231 NMPRRHIMKDECLIEIATQQPKDESALKRLRSLNKNWDKRSMTSSL 276
>gi|222474840|ref|YP_002563255.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
gi|222418976|gb|ACM48999.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
Length = 386
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 29/229 (12%)
Query: 169 CLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 228
CL+Q++ + VVD L R+ + P L+E+F D KV H +D+ L + F
Sbjct: 46 CLLQMAYQGGQCVVDVLDERLDLSP-LQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRP 104
Query: 229 MFDTGQASRVLKLERNSLEY--LLHHFCGVNANKE-YQNADWRVRPLPDEMLRYAREDTH 285
+FDT AS + + NS+ Y L+ F GV NK ++ DW RPL + +RYA +D
Sbjct: 105 IFDTQTASMLCEYHDNSVGYSKLVEQFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVT 164
Query: 286 YLLYIYDIM------KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLH 339
YL +Y+++ K +L+ +E EN + E + +YD LL +
Sbjct: 165 YLHELYEVLLGILTAKERLTWFLEEMEN----IAEAFVDNYD--------SLLEGMDFF- 211
Query: 340 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 388
L + + + EWR+ +AR + + V+ +++++ K
Sbjct: 212 ------PELGESEAIIARSIIEWREKVARLFNVNRNIVMHSKSVLLATK 254
>gi|16272339|ref|NP_438552.1| ribonuclease D [Haemophilus influenzae Rd KW20]
gi|1173094|sp|P44442.1|RND_HAEIN RecName: Full=Ribonuclease D; Short=RNase D
gi|1573361|gb|AAC22048.1| ribonuclease D (rnd) [Haemophilus influenzae Rd KW20]
Length = 399
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 135/300 (45%), Gaps = 24/300 (8%)
Query: 103 NLSVLDFVDKDIGDV-EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQY 161
N+ L F +K I + E PP F++V + L E+ + A+D E +
Sbjct: 7 NIPFLFFSNKKITMIKECQNPPH-----FRVVTDNTALLEVCNLAQQKSAVALDTEFMRV 61
Query: 162 RSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRD 221
++ L+Q+ ++D L + P++ + +P K++H D++ ++
Sbjct: 62 STYFPKLGLIQLYDGEHVSLIDPLAI-TDFSPFV-ALLANPKVLKILHSCSEDLLVFLQE 119
Query: 222 FGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
F M DT +R L L ++ L L + V +K +W RPL D L+YA
Sbjct: 120 FDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNVEIDKGATRTNWIKRPLSDIQLQYA 179
Query: 281 REDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLTEVYKRSYDVCRQLYEKELLSENSY 337
D YLL +Y I++ +L+ P E ++ + L + +K L E++ SE +Y
Sbjct: 180 AGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAKTHK--------LQERD--SEKAY 229
Query: 338 LHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
L I LN +L+ + L +WR +A D + Y++ + L ++AK P +++
Sbjct: 230 LDIPN--AWKLNPLELSRLRVLAQWRQNVAIERDLALSYIVKSEHLWKVAKNNPRNTSEM 287
>gi|384100730|ref|ZP_10001787.1| ribonuclease D [Rhodococcus imtechensis RKJ300]
gi|383841636|gb|EID80913.1| ribonuclease D [Rhodococcus imtechensis RKJ300]
Length = 429
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 104/254 (40%), Gaps = 24/254 (9%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVV-DTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+Q+ V+ D + + P L EV + ++H
Sbjct: 55 LAVDAERASGFRYSARAYLVQLRREGAGTVLLDPIPTAADLAP-LAEVIN--PLEWILHS 111
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L + G+ +FDT A R+ ER L ++ G+ K + ADW R
Sbjct: 112 ADQDLPGLA-EIGLAPATLFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAADWSKR 170
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE----SENSDTPLTEVYKRSYDVCRQL 326
PLPD L YA D L+ + ++M +L K E L K D R+
Sbjct: 171 PLPDSWLNYAALDVEVLVELRNVMAAELDEQGKSEWAAQEFEHIRLAGPPKPKADRWRRT 230
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
HI L+ +QLA L + R+ +AR D S VLP+ +I+
Sbjct: 231 S-----------HITSLK----TQRQLAAARSLWQAREDLARKRDVSPSRVLPDSAIIDA 275
Query: 387 AKQLPTTAAKLRRL 400
A + P LR L
Sbjct: 276 ATKDPRGIEALRAL 289
>gi|444428716|ref|ZP_21224024.1| ribonuclease D [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444238052|gb|ELU49683.1| ribonuclease D [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 372
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 128/300 (42%), Gaps = 15/300 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ + KDL+E+ A + D +D E + R++ L+Q+ + ++D +L
Sbjct: 3 YQIISKNKDLEEVCALAREADVVMLDTEFVRIRTYYPQLGLIQLFDGKQLSLIDPTELTD 62
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
E+ KD + KV+H D+ Q FG M DT + L ++
Sbjct: 63 MTS--FVELLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFAT 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ + GV +K DW RPL + L YA D HYL+ +Y+ + K+ +
Sbjct: 121 LVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKV---------N 171
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
+ E ++ D+ + + EN+YL I G L +LA++ L WR A
Sbjct: 172 EAGWWEAVQQESDLLVSKRIRSVNEENAYLDIKG--SWQLRPAELAILKPLATWRYREAI 229
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 428
D + ++ L+ +A+ L T K I R+ + I+K + Q A+
Sbjct: 230 KRDLALNFIFKEGDLLTVAR-LGLTGFKKMEAEGIDIRAINRHGAKIAGIVKQAKQTPAD 288
>gi|260580546|ref|ZP_05848374.1| ribonuclease D [Haemophilus influenzae RdAW]
gi|260092888|gb|EEW76823.1| ribonuclease D [Haemophilus influenzae RdAW]
Length = 399
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 135/300 (45%), Gaps = 24/300 (8%)
Query: 103 NLSVLDFVDKDIGDV-EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQY 161
N+ L F +K I + E PP F++V + L E+ + A+D E +
Sbjct: 7 NIPFLFFSNKKITMIKECQNPPH-----FRVVTDNTALLEVCNLAQQKSAVALDTEFMRV 61
Query: 162 RSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRD 221
++ L+Q+ ++D L + P++ + +P K++H D++ ++
Sbjct: 62 STYFPKLGLIQLYDGEHVSLIDPLAI-TDFSPFV-ALLANPKVLKILHSCSEDLLVFLQE 119
Query: 222 FGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
F M DT +R L L ++ L L + V +K +W RPL D L+YA
Sbjct: 120 FDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNVEIDKGATRTNWIKRPLSDIQLQYA 179
Query: 281 REDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLTEVYKRSYDVCRQLYEKELLSENSY 337
D YLL +Y I++ +L+ P E ++ + L + +K L E++ SE +Y
Sbjct: 180 AGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAKTHK--------LQERD--SEKAY 229
Query: 338 LHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
L I LN +L+ + L +WR +A D + Y++ + L ++AK P +++
Sbjct: 230 LDIPN--AWKLNPLELSRLRVLAQWRQNVAIERDLALSYIVKSEHLWKVAKNNPRNTSEM 287
>gi|254994696|ref|ZP_05276886.1| ribonuclease D (rnd) [Anaplasma marginale str. Mississippi]
Length = 386
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 29/229 (12%)
Query: 169 CLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 228
CL+Q++ + VVD L R+ + P L+E+F D KV H +D+ L + F
Sbjct: 46 CLLQMAYQGGQCVVDVLDERLDLSP-LQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRP 104
Query: 229 MFDTGQASRVLKLERNSLEY--LLHHFCGVNANKE-YQNADWRVRPLPDEMLRYAREDTH 285
+FDT AS + + NS+ Y L+ F GV NK ++ DW RPL + +RYA +D
Sbjct: 105 IFDTQTASMLCEYHDNSVGYSKLVEQFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVT 164
Query: 286 YLLYIYDIM------KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLH 339
YL +Y+++ K +L+ +E EN + E + +YD LL +
Sbjct: 165 YLHELYEVLLGILTAKGRLTWFLEEMEN----IAEAFVDNYD--------SLLEGMDFF- 211
Query: 340 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 388
L + + + EWR+ +AR + + V+ +++++ K
Sbjct: 212 ------PELGESEAIIARSIIEWREKVARLFNVNRNIVMHSKSVLLATK 254
>gi|90423836|ref|YP_532206.1| ribonuclease D [Rhodopseudomonas palustris BisB18]
gi|90105850|gb|ABD87887.1| ribonuclease D [Rhodopseudomonas palustris BisB18]
Length = 384
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 118/268 (44%), Gaps = 16/268 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ L + +L VD E + ++ L C++Q+++ + VVDTL + +
Sbjct: 3 LITTTDQLAAVCDRLAKHPAITVDTEFLRETTYYPLLCVVQMASAEDAVVVDTLAPGIDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--L 249
P+ ++ + KV H A +DI + GI +FDT A+ VL +S+ Y L
Sbjct: 63 KPFF-DLMANDDVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVLGYG-DSIAYDQL 120
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ G +K ++ DW RPL DE L YA D +L ++ + L + S+
Sbjct: 121 VERITGHRPDKTHRFTDWARRPLTDEQLHYAVSDVTHLRDVFAALDADLKKRGRSDWVSE 180
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
++YD + E E L+ ++LAV+ + WR+ A++
Sbjct: 181 EMEVLTSPKTYD-----FHPERAWER-------LKTRVRKPKELAVLMEVAAWREQEAQS 228
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKL 397
D VL + T+ +IA PT+ +L
Sbjct: 229 RDVPRSRVLKDDTVGDIATHAPTSLERL 256
>gi|383772368|ref|YP_005451434.1| ribonuclease D [Bradyrhizobium sp. S23321]
gi|381360492|dbj|BAL77322.1| ribonuclease D [Bradyrhizobium sp. S23321]
Length = 383
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 115/271 (42%), Gaps = 16/271 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ DL ++L VD E + ++ L C++Q+++ E V+DTL + +
Sbjct: 3 LITTTADLAAACSRLAKHPVITVDTEFLRETTYYPLLCVVQMASAEEAIVIDTLAAGIDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--L 249
P+ E+ + KV H A +DI + I +FDT A+ VL +S+ Y L
Sbjct: 63 KPFF-ELMANEAVLKVFHAARQDIEIIWHQANIIPHPVFDTQVAAMVLGYG-DSIAYDAL 120
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ G +K ++ DW RPL E + YA D +L ++ + L + S
Sbjct: 121 VEKVTGHRPDKTHRFTDWSRRPLTKEQMHYAVSDVTHLRDVFAALDADLKKRRRSEWVSI 180
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
++YD + E E L+ + LAV+ + WR+ A++
Sbjct: 181 EMEVLTSPKTYD-----FHPERAWER-------LKTRVRKPKDLAVLMEVAAWREQEAQS 228
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
D G VL + + +IA P T KL L
Sbjct: 229 RDVPRGRVLRDEAVSDIATHAPNTIEKLANL 259
>gi|254234416|ref|ZP_04927739.1| ribonuclease D [Pseudomonas aeruginosa C3719]
gi|126166347|gb|EAZ51858.1| ribonuclease D [Pseudomonas aeruginosa C3719]
Length = 374
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 17/242 (7%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
A+D E + + L+Q+ +++++D L +Q E+ +D KV+H
Sbjct: 28 LALDTEFMRVDTSYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHAC 85
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRV 269
D+ R G +FDT A+ L + +S+ Y L+ ++ K+ +DW
Sbjct: 86 SEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQ 144
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
RPL + +RYA +D +L +Y + +LS E L + + ++CR+ +
Sbjct: 145 RPLTEMQMRYAADDVQHLAQVYLALDARLSE-----EKRAWLLEDGAELVANLCRESDPR 199
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
E E G L QQLAV+ LC WR+ AR + +VL RTL +A+
Sbjct: 200 EAYREVKL-------GWRLRPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARL 252
Query: 390 LP 391
LP
Sbjct: 253 LP 254
>gi|389865548|ref|YP_006367789.1| 3'-5' exonuclease [Modestobacter marinus]
gi|388487752|emb|CCH89314.1| 3'-5' exonuclease [Modestobacter marinus]
Length = 435
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 24/197 (12%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A++D+ L + G+ +FDT A+R+ L R L ++ G++ K + AD
Sbjct: 126 VLHAANQDLPCLA-ELGLVPTRLFDTELAARLAGLPRVGLGAVVESLLGLSLQKGHSAAD 184
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP++ L YA D L+ + D + L E T + RQ
Sbjct: 185 WSTRPLPEDWLVYAALDVEVLVELRDALAAIL------DEQGKT----------EWARQE 228
Query: 327 YEKELLSE------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 380
+E L + + + G+ G + +QL ++ L + RD +AR D + G VLP+
Sbjct: 229 FEAILAAGPPAPKVDPWRKTSGMHGLR-SRRQLGMLRALWQARDELARRRDIAPGRVLPD 287
Query: 381 RTLIEIAKQLPTTAAKL 397
++ + PTT A L
Sbjct: 288 TAMVSAVQADPTTEAAL 304
>gi|306836261|ref|ZP_07469243.1| ribonuclease D [Corynebacterium accolens ATCC 49726]
gi|304567853|gb|EFM43436.1| ribonuclease D [Corynebacterium accolens ATCC 49726]
Length = 406
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 119/275 (43%), Gaps = 20/275 (7%)
Query: 131 KLVEEVKDLKELAAKLKS-VDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK-LR 188
K++ + E AA+L++ FA+D E + L+QI R ++ + R
Sbjct: 14 KVLSTPAEFAEAAARLQAGTGAFAIDTERASGYRYDDRAFLIQIRRRGAGTMLFAPEGHR 73
Query: 189 VQVGPYLREVFKDPTKKKVMHGADRDIV---WLQRDFGIYLCNMFDTGQASRVLKLERNS 245
++ L V + ++H A D+ WL G++ +FDT A+R R +
Sbjct: 74 AELAQALAPVLNG--QHWIIHAAPSDLPSLGWL----GLFPGTLFDTELAARFTGFPRTN 127
Query: 246 LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES 305
L ++ V K + + DW + L +EM YA D LL + ++ L+ K
Sbjct: 128 LGAIIAELFDVQLGKGHGDDDWSIPQLSEEMRAYAALDVELLLELATTLRDILAEQEKLE 187
Query: 306 ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
+ V K ++D Q S+ I G+ N Q A L RD
Sbjct: 188 WMLEECAAIVAKHAHDTSPQ--------PGSWRDIKGVSSLK-NGNQRAAAQSLWNLRDD 238
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
I+R D + G VLPN+ L+EIA+ LP+T +L R+
Sbjct: 239 ISRRTDTAPGRVLPNKVLVEIARVLPSTQPQLTRI 273
>gi|217976404|ref|YP_002360551.1| ribonuclease D [Methylocella silvestris BL2]
gi|217501780|gb|ACK49189.1| ribonuclease D [Methylocella silvestris BL2]
Length = 405
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 117/272 (43%), Gaps = 20/272 (7%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
L+ + L E+ +L S VD E + +F C++Q+++ E VD L +
Sbjct: 7 MSLITTTEALAEVCQRLASHAFVTVDTEFLRETTFWPKLCVVQLASADEAVAVDALASGL 66
Query: 190 QVGPYLREVFKDPTKKKVMHGA--DRDIVW-LQRDFGIYLCNMFDTGQASRVLKL-ERNS 245
+ P L E+ DP KV H A D +IVW L + I +FDT A+ V ++ S
Sbjct: 67 DLAP-LFELMADPAVVKVFHAARQDLEIVWNLAK---IIPAPLFDTQVAAMVCGFGDQVS 122
Query: 246 LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES 305
L+ C V+ +K + DW RPL + YA D YL IY I++ KL +
Sbjct: 123 YGDLVQTVCKVSLDKSSRFTDWSRRPLLPAQVDYAIADVTYLRDIYAILQDKLKETGRLG 182
Query: 306 ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
SD +Y E +N++ + + L V+ + WR+
Sbjct: 183 WLSDEMALLTSPATY---------EQHPDNAWER---FRNRVRKPRDLGVLMEVAGWREA 230
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
A+A D +L + LIE+A P +A L
Sbjct: 231 EAQARDVPRSRILKDDVLIELALAAPRSADAL 262
>gi|392416035|ref|YP_006452640.1| ribonuclease D [Mycobacterium chubuense NBB4]
gi|390615811|gb|AFM16961.1| ribonuclease D [Mycobacterium chubuense NBB4]
Length = 435
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H AD+D+ L + G+ +++DT A R+ +R +L ++ G+ K + AD
Sbjct: 126 VLHAADQDLPCLA-EIGMRPTSLYDTELAGRLANYDRVNLAAMVQRLLGLQLTKGHGAAD 184
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP + L YA D L + D + L+ K TE ++ ++ R
Sbjct: 185 WSKRPLPHDWLNYAALDVEVLAELRDAIDAVLAEQGK---------TEWARQEFEFLRT- 234
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
+E + + G+ + + LA V L RD IAR D + G +LP+ ++
Sbjct: 235 FEGSPTRRDRWRRTSGIHKV-RDPRALAAVRELWMTRDQIARRRDIAPGRILPDSAIVNA 293
Query: 387 AKQLPTTAAKLRRL 400
A P T KL L
Sbjct: 294 ATTDPDTVEKLTAL 307
>gi|149915004|ref|ZP_01903533.1| ribonuclease D [Roseobacter sp. AzwK-3b]
gi|149811192|gb|EDM71029.1| ribonuclease D [Roseobacter sp. AzwK-3b]
Length = 385
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 119/275 (43%), Gaps = 18/275 (6%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIS---TRTEDFV-VDTL 185
K + + L++ + + D VD E + R++ CL+Q++ T ED V VD L
Sbjct: 1 MKTLTTTEQLEQFCTRARQFDYVTVDTEFLRERTYYSKLCLVQLAVPGTGAEDAVLVDPL 60
Query: 186 KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERN 244
+ + P L ++F+D + KV H A +D+ D G+ +FDT + V E+
Sbjct: 61 AGDLSMAP-LYDLFRDESVVKVFHAARQDLEIFFVDAGVIPAPLFDTQVTAMVCGFGEQV 119
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
E L+ +K + DW RPL D +YA D +L IY+ + KL+ ++
Sbjct: 120 GYETLVRKIAKEQLDKTSRFTDWSRRPLTDAQKKYALADVTHLRDIYEFLARKLAQSDRQ 179
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
++ +Y V K + + N+ + + LA+V L +R+
Sbjct: 180 KWVTEELQVLTAPETYRVSPDEAWKRVKTRNA------------SGRFLAIVRELARFRE 227
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 399
A+A D V + L+E+A P T L R
Sbjct: 228 EYAQARDVPRSRVYKDDALVELASTKPATHEDLSR 262
>gi|404214776|ref|YP_006668971.1| Ribonuclease D [Gordonia sp. KTR9]
gi|403645575|gb|AFR48815.1| Ribonuclease D [Gordonia sp. KTR9]
Length = 425
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 121/272 (44%), Gaps = 16/272 (5%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+QI R + F++D + + P + + P + V+H
Sbjct: 52 IAVDTERASGYRYSQRAYLIQIKRRGSGSFLLDPIGDPAALAPVI-GALRGP--EWVLHA 108
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L R+ G ++DT A R+L L + +L ++ F G+ K + ADW R
Sbjct: 109 ADQDLPCL-RELGFECVELYDTELAGRLLGLAKVNLAAMVAEFLGLGLLKGHGAADWSRR 167
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLPDE L YA D L+ + D M L+ +E D E + +Y + R
Sbjct: 168 PLPDEWLNYAALDVEVLVELRDAMDAALA-----AEGKDGWAREEF--AYILTRPPAPPR 220
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+I+ ++ + + LA V L R+ +A+ D + G VLP+ ++ A
Sbjct: 221 TDRWRKTSNIHTVK----STRALAAVRELWTAREELAQRRDVAPGRVLPDTAIVNAATVN 276
Query: 391 PTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
P + A L +L R G LS ++ +
Sbjct: 277 PESIADLTKLPVFGGPRQRRQAGIWLSALQRA 308
>gi|229844446|ref|ZP_04464586.1| ribonuclease D [Haemophilus influenzae 6P18H1]
gi|229812695|gb|EEP48384.1| ribonuclease D [Haemophilus influenzae 6P18H1]
Length = 399
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 136/300 (45%), Gaps = 24/300 (8%)
Query: 103 NLSVLDFVDKDIGDV-EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQY 161
N+ L F++K I + E PP F+++ + L E+ + A+D E +
Sbjct: 7 NIPFLFFLNKKITMIKECQNPPH-----FRVISDNAALLEICNLAQQQSAVALDTEFMRV 61
Query: 162 RSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRD 221
++ L+Q+ ++D L + P++ + +P K++H D++ ++
Sbjct: 62 STYFPKLGLIQLYDGERVSLIDPLAI-TDFSPFV-ALLANPKVLKILHSCSEDLLVFLQE 119
Query: 222 FGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
F M DT +R L L ++ L L + + +K +W RPL D L+YA
Sbjct: 120 FDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNIEIDKGATLTNWIKRPLSDIQLQYA 179
Query: 281 REDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLTEVYKRSYDVCRQLYEKELLSENSY 337
D YLL +Y I++ +L+ P E ++ + L + +K L E++ SE +Y
Sbjct: 180 AGDVWYLLPLYHILEKELAKTPWEQAVRDDCELALAKTHK--------LQERD--SEKAY 229
Query: 338 LHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
L I LN +L+ + L +WR +A D + Y++ + L ++AK P +++
Sbjct: 230 LDIPN--AWKLNPLELSRLRILAKWRQNVAIERDLALSYIVKSEHLWKVAKNNPRNTSEM 287
>gi|304391965|ref|ZP_07373907.1| ribonuclease D [Ahrensia sp. R2A130]
gi|303296194|gb|EFL90552.1| ribonuclease D [Ahrensia sp. R2A130]
Length = 383
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 121/273 (44%), Gaps = 16/273 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
K++E ++L D VD E + +F + CL+QI+ ++ +VD + +
Sbjct: 1 MKIIETTQELATACKDFAQHDYVTVDTEFLRETTFWPILCLIQIAGPDDECIVDPMADGI 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY- 248
+ P+ E+ D + KV H A +D+ + G+ +FDT A+ V +S+ Y
Sbjct: 61 DLQPFF-ELMADTSVVKVFHAARQDVEIVYHLGGLVPKPLFDTQVAAMVCGYG-DSVAYN 118
Query: 249 -LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
L+ G +K + DW RPL + L YA D +L +Y +K L E +N
Sbjct: 119 ALVSRITGGVIDKSSRFTDWARRPLTTKQLDYALADVTHLRDVYQSLKADL-----EKKN 173
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
+ E DV +L E ++ L+ ++LAV+ + +WR+ A
Sbjct: 174 RKHWVDE----EMDVLTNPETYDLPVEKAWSR---LKMRVRKPRELAVMKFVAQWREEQA 226
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
R D G V+ + + EIA+Q P L RL
Sbjct: 227 RDRDVPRGRVVKDDAIYEIAQQQPRDEKALSRL 259
>gi|145628753|ref|ZP_01784553.1| ribonuclease D [Haemophilus influenzae 22.1-21]
gi|144979223|gb|EDJ88909.1| ribonuclease D [Haemophilus influenzae 22.1-21]
Length = 399
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 28/302 (9%)
Query: 103 NLSVLDFVDKDIGDV-EAVKPPSLEQTPFKLVEEVKDLKELA--AKLKSVDEFAVDLEHN 159
N+ L F +K I + E PP F+++ + L E+ A++KS A+D E
Sbjct: 7 NIPFLFFSNKKITMIKECQNPPH-----FRVITDNAALLEICNLAQMKSA--VALDTEFM 59
Query: 160 QYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQ 219
+ ++ L+Q+ +VD L + P++ + +P K++H D++
Sbjct: 60 RVSTYFPKLGLIQLYDGERVSLVDPLAI-TDFSPFV-ALLSNPKVLKILHSCSEDLLVFL 117
Query: 220 RDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLR 278
++F M DT +R L L ++ L L + V +K +W RPL D L+
Sbjct: 118 QEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNVEIDKGATRTNWIKRPLSDIQLQ 177
Query: 279 YAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLTEVYKRSYDVCRQLYEKELLSEN 335
YA D YLL +Y I++ +L+ P E ++ + L + +K L E++ SE
Sbjct: 178 YAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAKTHK--------LQERD--SEK 227
Query: 336 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 395
+YL I LN +L+ + L +WR +A D + Y++ + L ++AK P +
Sbjct: 228 AYLDIPN--AWKLNPLELSRLRVLAQWRQNVAIERDLALSYIVKSEHLWKVAKNNPRNTS 285
Query: 396 KL 397
++
Sbjct: 286 EM 287
>gi|342179228|sp|Q0BVP4.2|RND_GRABC RecName: Full=Ribonuclease D; Short=RNase D
Length = 395
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 116/267 (43%), Gaps = 14/267 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + +DL L L+ +D E + R++ C++Q+ V+DTL + +
Sbjct: 14 LITKSEDLAALCTTLRREPYVTIDTEFMRERTYWPELCVVQLGGADCVAVIDTLAPELDL 73
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P + E+ DP KV H +DI FG MFDT A+ V ++ + L+
Sbjct: 74 AP-VGELLADPAVIKVFHACRQDIEIFLLRFGSIPQPMFDTQVAAMVAGFGDQVGYDTLV 132
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G + +K ++ +DW RPL + YA D +L +Y+ ++ +L E E
Sbjct: 133 SSLTGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRL-----EKEGRLA 187
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
++E D + + E L+ N + L ++ +C WR+V A+
Sbjct: 188 WVSEEMAVLNDPATYRTDPVTMWER-------LRPRTNNRRYLGLLRAICAWREVEAQRL 240
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKL 397
+ ++ + +L+EIA P A L
Sbjct: 241 NIPRQRLIKDESLLEIAATSPADAESL 267
>gi|374575044|ref|ZP_09648140.1| ribonuclease D [Bradyrhizobium sp. WSM471]
gi|374423365|gb|EHR02898.1| ribonuclease D [Bradyrhizobium sp. WSM471]
Length = 383
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 115/271 (42%), Gaps = 16/271 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ DL ++L VD E + ++ L C++Q+++ E V+DTL + +
Sbjct: 3 LITTTADLAAACSRLAKHPVITVDTEFLRETTYYPLLCVVQMASAEEAIVIDTLAAGIDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--L 249
P+ E+ + KV H A +DI + I +FDT A+ VL +S+ Y L
Sbjct: 63 KPFF-ELMANEAVLKVFHAARQDIEIIWHQANIIPHPVFDTQVAAMVLGYG-DSIAYDAL 120
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ G +K ++ DW RPL E + YA D +L ++ + L + S
Sbjct: 121 VEKVTGHRPDKTHRFTDWSRRPLTKEQMHYAVSDVTHLRDVFAALDADLKKRRRSEWVSI 180
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
++YD + E E L+ + LAV+ + WR+ A++
Sbjct: 181 EMEVLTSPKTYD-----FHPERAWER-------LKTRVRKPKDLAVLMEVAAWREQEAQS 228
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
D G VL + + +IA P T KL L
Sbjct: 229 RDVPRGRVLRDEAVSDIATHAPNTIEKLANL 259
>gi|154508933|ref|ZP_02044575.1| hypothetical protein ACTODO_01449 [Actinomyces odontolyticus ATCC
17982]
gi|153798567|gb|EDN80987.1| putative ribonuclease D [Actinomyces odontolyticus ATCC 17982]
Length = 414
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 120/270 (44%), Gaps = 35/270 (12%)
Query: 132 LVEEVKDLKELAAKLKSVDE-FAVDLEHNQYRSFLGLTCLMQISTRTED---FVVDTLKL 187
+++ KDL+ A L + A+D+E Q + L+QI R ED F++DT L
Sbjct: 30 VIDTQKDLEAAARALSTGSAPIALDVERAQGFRYGSDPYLVQI--RREDVGTFLIDTHAL 87
Query: 188 RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLE 247
P L + ++H +D+ L R G+ +FDT A+R++ LER L
Sbjct: 88 -----PDLSVLQPGVEDVWLLHDCLQDLPNL-RQVGLRPSTLFDTEIAARLIGLERFGLA 141
Query: 248 YLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
++ G+ K++Q +DW VRPLP E LRYA D L +Y + +L M +
Sbjct: 142 AVVEQVLGLGLVKDHQASDWSVRPLPKEWLRYAALDVELLTELYYRLSKRLDEMGR---- 197
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGLQGAGLNAQQLAVVAGLCE 361
++ +Q + L + + I G G + + LAV+ L E
Sbjct: 198 ------------WEWAQQEFGYALSVTPPGPKPDRWRSIPG-AGKIRSRRGLAVLKALWE 244
Query: 362 WRDVIARADDESTGYVLPNRTLIEIAKQLP 391
R+ IAR D S G ++ N L+ A P
Sbjct: 245 TRESIARRIDLSPGRLVRNAALVRAASNPP 274
>gi|254492081|ref|ZP_05105256.1| ribonuclease D [Methylophaga thiooxidans DMS010]
gi|224462633|gb|EEF78907.1| ribonuclease D [Methylophaga thiooxydans DMS010]
Length = 379
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 138/299 (46%), Gaps = 28/299 (9%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ ++ LK+L +L A+D E ++ +++ CL+Q++ VD LK+
Sbjct: 3 IQFIDSSAGLKDLCEQLAESTWLAIDTEFHREKTYYPQLCLIQVANDDVIACVDPLKID- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGA--DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLE 247
+ P L +VF V H A D ++++L RD +FDT A+ VL + +
Sbjct: 62 DLSP-LMDVFYRTDMTLVFHAARQDLELLFLLRD--ALPQQVFDTQLAATVLGYG-DQIG 117
Query: 248 Y--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK-- 303
Y L+ V+ +K + DWR RPL E + YA +D YL +Y ++ KL +
Sbjct: 118 YGNLVKQCLNVDLDKAHARTDWRQRPLSPEQIDYAADDVRYLRELYHQLEAKLVDTGRIN 177
Query: 304 --ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCE 361
+ + + TE Y+ + E+S+L I G L + QLAV+ L
Sbjct: 178 WLKEDFATLSATETYQSN-------------PESSWLRIKG--SGRLKSSQLAVLQQLGV 222
Query: 362 WRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK 420
WR+ A + +++ + ++++A+ P++ + ++ + I+R+ +L I+
Sbjct: 223 WREQRAIKQNLPRRWIIKDDVMLDLARFSPSSLDAMNKIRGLESRDIDRHGQAILKAIE 281
>gi|404258462|ref|ZP_10961781.1| ribonuclease D [Gordonia namibiensis NBRC 108229]
gi|403402976|dbj|GAC00191.1| ribonuclease D [Gordonia namibiensis NBRC 108229]
Length = 426
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 120/274 (43%), Gaps = 16/274 (5%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+QI R + F++D + + P + + + P + V+H
Sbjct: 55 IAVDTERASGYRYSQRAYLIQIKRRGSGSFLLDPIADPEALAPVI-DALRGP--EWVLHA 111
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L R+ G ++DT A R+L L + +L ++ F G+ K + ADW R
Sbjct: 112 ADQDLPCL-RELGFECVELYDTELAGRLLGLAKVNLAAMVAQFLGLGLLKGHGAADWSRR 170
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLPD+ L YA D L+ + D M L+ K+ + V R R +
Sbjct: 171 PLPDDWLNYAALDVEVLVELRDAMDAALAESGKDGWAREE-FAYVLARPPAPPR----TD 225
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
+ S +H +A+ LA V L R+ +A D + G VLP+ ++ A
Sbjct: 226 RWRKTSNIHTVK------SARALAAVRELWTAREELAERRDVAPGRVLPDTAIVNAATVD 279
Query: 391 PTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 424
P + +L RL R G LS ++ + +
Sbjct: 280 PKSNNELTRLPIFGGPRQRRQAGIWLSALQRARE 313
>gi|192361069|ref|YP_001982899.1| ribonuclease D [Cellvibrio japonicus Ueda107]
gi|190687234|gb|ACE84912.1| ribonuclease D [Cellvibrio japonicus Ueda107]
Length = 378
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 125/296 (42%), Gaps = 18/296 (6%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
+E L EL + AVD E + +F + L+QI +++D L +
Sbjct: 10 IERADQLAELCVGWRQQGAIAVDTEFMRTDTFYPIAGLLQIGDGKGCYLIDPLAI-ADWQ 68
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LL 250
P LRE+ D KV+H D+ QR + +FDT + L L Y L+
Sbjct: 69 P-LRELLLDGKVIKVLHSCSEDLEVFQRWLDLVPSPLFDTQIGAAFANLG-FGLGYANLV 126
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY-DIMKIKLSSMPKESENSD 309
G+ K+ +DW RPL L+YA D ++L +Y +++I +S E SD
Sbjct: 127 KTLLGIEIPKDETRSDWLQRPLSQSQLKYAALDVAHMLVVYGKLLQILKTSQRLEWVKSD 186
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
R+ D Y+K + L Q+LAV+ LC WR+ AR
Sbjct: 187 CADLVEQARAPDHFDDAYQKVGFAWK------------LRPQELAVLRQLCIWRETQARQ 234
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQN 425
D ++ +L +IA++ P +L+++ + +L+I K+ +++
Sbjct: 235 RDIPRNRLIKEPSLWDIARKKPRDLQQLQQIADIPQRTLRNDGETLLAITKSQLES 290
>gi|421600132|ref|ZP_16043201.1| ribonuclease D [Bradyrhizobium sp. CCGE-LA001]
gi|404267757|gb|EJZ32368.1| ribonuclease D [Bradyrhizobium sp. CCGE-LA001]
Length = 382
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 115/271 (42%), Gaps = 16/271 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ DL ++L VD E + ++ L C++Q+++ E V+DTL + +
Sbjct: 3 LITTTADLAAACSRLAKHPVITVDTEFLRETTYYPLLCVVQMASPEEAVVIDTLAEGIDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--L 249
P+ E+ + KV H A +DI + I +FDT A+ VL +S+ Y L
Sbjct: 63 KPFF-ELMGNEGVLKVFHAARQDIEIIWHQANIIPHPVFDTQVAAMVLGYG-DSIAYDQL 120
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ G +K ++ DW RPL E + YA D +L ++ + L + S
Sbjct: 121 VEKVTGHRPDKTHRFTDWSRRPLTKEQMHYAVSDVTHLRDVFAALDADLKKRRRSEWVSI 180
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
R+YD + E E L+ + LAV+ + WR+ A++
Sbjct: 181 EMEVLTSPRTYD-----FHPERAWER-------LKTRVRKPKDLAVLMEVAAWREQEAQS 228
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
D G VL + + +IA P T KL L
Sbjct: 229 RDVPRGRVLRDEAITDIATHAPNTLEKLANL 259
>gi|421504183|ref|ZP_15951127.1| ribonuclease D [Pseudomonas mendocina DLHK]
gi|400345284|gb|EJO93650.1| ribonuclease D [Pseudomonas mendocina DLHK]
Length = 377
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 116/264 (43%), Gaps = 17/264 (6%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L E A +++ A+D E + +F + L+Q+S + +++D L + L E+
Sbjct: 14 LAEHCAAWRALPFVALDTEFMRVDTFYPIAGLLQVSGGDKAYLIDPLC--IDDWRPLAEL 71
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGV 256
+ T KV+H D+ R G +FDT A+ L L S+ Y L+ G+
Sbjct: 72 LQAQTVVKVLHSCSEDLEVFLRLTGSLPVPLFDTQVAAGYLNLG-FSMGYSRLVQTLLGI 130
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
K +DW RPL + YA ED +L+ +Y ++ +LS +E L +
Sbjct: 131 ELPKGETRSDWLQRPLSATQISYAAEDVLHLVEVYQVLTQRLS-----AEKHAWVLEDGA 185
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
+ + R++ EL E L+ QQ AV+ LC WR+ ARA ++
Sbjct: 186 ELVAALSREVDPDELWREAKL-------AWKLSRQQQAVLRALCAWRERQARARNQPRNR 238
Query: 377 VLPNRTLIEIAKQLPTTAAKLRRL 400
+L +L +A+ P L R+
Sbjct: 239 ILREHSLWPLARTQPDNLVALARI 262
>gi|417842935|ref|ZP_12489013.1| Ribonuclease D [Haemophilus haemolyticus M21127]
gi|341950811|gb|EGT77396.1| Ribonuclease D [Haemophilus haemolyticus M21127]
Length = 399
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 139/302 (46%), Gaps = 28/302 (9%)
Query: 103 NLSVLDFVDKDIGDV-EAVKPPSLEQTPFKLVEEVKDLKELA--AKLKSVDEFAVDLEHN 159
N+ L F +K I + E PP F ++ + L E+ A++KS A+D E
Sbjct: 7 NIPFLFFSNKKITMIKECQNPPH-----FTVITDNTSLLEICNLAQMKST--VALDTEFM 59
Query: 160 QYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQ 219
+ ++ L+Q+ ++D L + P++ E+ +P K++H D++
Sbjct: 60 RVSTYFPKLGLIQLYDGERVSLIDPLAI-TDFSPFV-ELLVNPNVLKILHSCSEDLLVFL 117
Query: 220 RDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLR 278
++F M DT +R L L ++ L L + V +K +W RPL D L+
Sbjct: 118 QEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNVEIDKGATRTNWIKRPLSDIQLQ 177
Query: 279 YAREDTHYLLYIYDIMKIKLSSMPKE---SENSDTPLTEVYKRSYDVCRQLYEKELLSEN 335
YA D YLL +Y I++ +L+ P E ++ + L++ +K L E++ SE
Sbjct: 178 YAAGDVWYLLPLYHILEKELAKTPWERAVRDDCELALSKTHK--------LQERD--SEK 227
Query: 336 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 395
+YL I LN +L+ + L +WR + D + Y++ + L ++AK P +
Sbjct: 228 AYLDIPN--AWKLNPLELSRLRILAQWRQNVGIERDLALSYIVKSDNLWKVAKNNPRNTS 285
Query: 396 KL 397
++
Sbjct: 286 EM 287
>gi|407070822|ref|ZP_11101660.1| ribonuclease D [Vibrio cyclitrophicus ZF14]
Length = 372
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 123/261 (47%), Gaps = 16/261 (6%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ ++KDL+ + + + D +D E + R++ L+Q+ ++D + L
Sbjct: 3 YQIITQLKDLERVCQQAREADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIALG- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
++ P++ + KD + KV+H D+ Q FG M DT + L ++
Sbjct: 62 EMTPFV-GLLKDASVLKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFLGHGLSTGFAA 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD-IMKIKLSSMPKESEN 307
L+ F GV+ +K DW RPL + L YA D HYL+ +Y+ +++ + + E+
Sbjct: 121 LVSEFVGVDLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAAQ 180
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
++ L +V KR ++ +++YL I G L +QLA++ L WR A
Sbjct: 181 QESDL-QVAKRI---------RKANPDSAYLDIKG--AWQLKPKQLAILRPLATWRLKEA 228
Query: 368 RADDESTGYVLPNRTLIEIAK 388
D + +V + L +A+
Sbjct: 229 IKRDLALNFVFKEQDLWAVAR 249
>gi|427429224|ref|ZP_18919260.1| Ribonuclease D [Caenispirillum salinarum AK4]
gi|425880904|gb|EKV29598.1| Ribonuclease D [Caenispirillum salinarum AK4]
Length = 390
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 119/287 (41%), Gaps = 22/287 (7%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + L+ L +L + VD E + R++ CL+Q++ E + +D L + +
Sbjct: 3 LIADSDALRALCDRLSKAEYITVDTEFMRDRTYWPGLCLIQVAGPDEAWCIDPLAPGMDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P L ++ +D + KV H A +D+ R G + +FDT A+ V + E L
Sbjct: 63 TP-LFDLMRDESVLKVFHAARQDLEIFYRAMGAFPKPLFDTQIAAMVCGFGDSVGYETLA 121
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE---SEN 307
+K + DW RPL ++ L YA D +L +YD ++ +L + +E
Sbjct: 122 TKLAKARIDKSMRFTDWGRRPLTEKQLNYALADVTHLRVVYDKLRKRLEKTGRAHWLTEE 181
Query: 308 SDTPLT-EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
D + E Y D Q + S LAV+ + WR+
Sbjct: 182 MDALVAPEKYTFDPDAAWQRMKPRTKSPRF----------------LAVLKEVAAWRERE 225
Query: 367 ARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 413
A+ D VL + ++EIA P T +L R+ + E +G
Sbjct: 226 AQTKDMPRQRVLKDEAILEIAAHGPKTVEELARVRALTRNTAEGRLG 272
>gi|384197155|ref|YP_005582899.1| 3'-5' exonuclease [Bifidobacterium breve ACS-071-V-Sch8b]
gi|333110648|gb|AEF27664.1| 3'-5' exonuclease [Bifidobacterium breve ACS-071-V-Sch8b]
Length = 415
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
D G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 94 DLGLQPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 153
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 340
D L+ + ++M+ L + K+ E ++ T R+ + +L I
Sbjct: 154 ALDVEVLIELENLMRRDLRAAGKD-EWAEEEFTHALSEGL-APRKPHPV------PWLRI 205
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ + Q LA+ L + RD +AR D + +L + ++IE A + P AA+ R L
Sbjct: 206 SRITQLSRDPQGLAIAKSLWQERDKLARQHDIAPSLLLSDSSIIEAATRKPHNAAQFRAL 265
>gi|83858515|ref|ZP_00952037.1| ribonuclease D [Oceanicaulis sp. HTCC2633]
gi|83853338|gb|EAP91190.1| ribonuclease D [Oceanicaulis sp. HTCC2633]
Length = 384
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 126/275 (45%), Gaps = 19/275 (6%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ + + + L + AKL+ + AVD E + +F CL+Q + + ++D L +
Sbjct: 1 MEWIADTESLAQACAKLRQAEYVAVDTEFMRESTFWPQLCLIQAAGDDTEVLIDPLAEGL 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDI-VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
+ P+ ++ D KV H +D+ ++ GI +FD+ A+ + L +S+ Y
Sbjct: 61 DLQPFY-DLLTDQNVIKVFHACRQDLEIFFHEGGGIIPKPLFDSQIAAMAVGLG-DSISY 118
Query: 249 --LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
L+ VN +K + DW RPL D+ YA D +L ++ I++ KL+ + +E+
Sbjct: 119 DNLVRALVKVNLDKGSRFTDWSRRPLSDKQKEYALADVTHLRDLFPILREKLAKVGREAW 178
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKEL-LSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
++ T +Y++ + K L L + + + GL+ A L WR+
Sbjct: 179 LAEEMKTLTDPATYEMHPEDAWKRLKLRKTTAKWLAGLKAAAL-------------WRET 225
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
A+ D ++ + L E+A PT+ L+ L
Sbjct: 226 EAQTRDIPRSRIIKDDGLYELAHAAPTSLDDLKGL 260
>gi|431928090|ref|YP_007241124.1| ribonuclease D [Pseudomonas stutzeri RCH2]
gi|431826377|gb|AGA87494.1| ribonuclease D [Pseudomonas stutzeri RCH2]
Length = 374
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 117/264 (44%), Gaps = 17/264 (6%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L L A+ + + AVD E + +F + L+Q+ +++D L V V
Sbjct: 14 LTHLCAEWRQLPYVAVDTEFMRVDTFYPIAGLVQVGDGRRAYLIDPLA--VHDWSAFAAV 71
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGV 256
+D KV+H D+ L R G +FDT A+ L + S+ Y L+ G+
Sbjct: 72 LQDNAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIG-FSMGYSRLVQAVLGI 130
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
K +DW RPL D ++YA ED +L +Y+ + +PK SE+ V
Sbjct: 131 ELPKGETRSDWLQRPLSDMQVQYAAEDAQHLAELYEAL------LPKLSEDKR---AWVL 181
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
+ ++ L ++E E +Y + Q L QQLAV+ L WR+ ARA ++
Sbjct: 182 EDGAELVANL-QRESDPEEAYREVK--QAWRLKPQQLAVLKVLTAWRERQARARNQPRNR 238
Query: 377 VLPNRTLIEIAKQLPTTAAKLRRL 400
VL +L +A+ P L R+
Sbjct: 239 VLREASLWPLARTQPRDLVTLARI 262
>gi|390434792|ref|ZP_10223330.1| ribonuclease D [Pantoea agglomerans IG1]
Length = 373
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 127/293 (43%), Gaps = 26/293 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ L+++ L ++ K + A+D E + R++ L+Q+ + ++D L +R
Sbjct: 3 YSLIDQDDQLADVCQKARQHAAVALDTEFVRTRTYYPQLGLIQLFDDQQLVLIDPLNIR- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDI-VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
P++ + D + K +H D+ V+L R FG+ M DT Q + S +
Sbjct: 62 DWSPFI-ALLTDTSVTKFLHAGGEDLEVFLHR-FGVLPTPMIDT-QILAAFSGQPLSWGF 118
Query: 249 --LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++ HF V +K DW RPL YA D HYLL I + I +E+
Sbjct: 119 ASMVAHFTQVELDKSESRTDWLARPLTQRQCEYAAADVHYLLPIARQLMIN----TEEAG 174
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLS---ENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
N L+E C L ++ L S + ++ I L +QLA + L WR
Sbjct: 175 NMAAALSE--------CDNLCQRRLDSLSPDEAWRDITN--AWQLRPRQLAALQRLAAWR 224
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVL 416
+AR D + +V+ L ++A+ +P + +L L S H R+ G L
Sbjct: 225 LKLAREKDMAVNFVVREEHLWKVARFMPGSLGELDHLGLSGHEI--RFHGKAL 275
>gi|440701120|ref|ZP_20883331.1| putative ribonuclease D [Streptomyces turgidiscabies Car8]
gi|440276236|gb|ELP64529.1| putative ribonuclease D [Streptomyces turgidiscabies Car8]
Length = 429
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 88/206 (42%), Gaps = 12/206 (5%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A +D+ L R+ G+ +FDT A R+ R L ++ G K + D
Sbjct: 118 VLHAATQDLPCL-REIGMIPTQLFDTELAGRLAGFPRVGLGAMVEGVLGFVLEKGHSAVD 176
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP+ LRYA D L+ + D ++ +L K E ++ +D
Sbjct: 177 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWARQEFDAIASA 227
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
E ++ + G+ +QLAVV L E RD IA+ D S G VL + ++E
Sbjct: 228 PPPE-PRKDPWRRTSGMHKV-RRRRQLAVVRELWETRDRIAQRRDVSPGKVLSDAAIVEA 285
Query: 387 AKQLPTTAAKLRRLLKSKHSYIERYM 412
A +P L L H R +
Sbjct: 286 ALAVPVNVNALAALTGFGHRMGRRQL 311
>gi|339493381|ref|YP_004713674.1| ribonuclease D [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|338800753|gb|AEJ04585.1| ribonuclease D [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
Length = 374
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 117/264 (44%), Gaps = 17/264 (6%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L L A+ + + AVD E + +F + L+Q+ +++D L +R P+ +
Sbjct: 14 LARLCAEWRQLPFVAVDTEFMRVDTFYPIAGLVQVGDGRRAYLIDPLAVR-DWRPF-ATL 71
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGV 256
D KV+H D+ L R G +FDT A+ L + S+ Y L+ G+
Sbjct: 72 LDDAAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIG-FSMGYSRLVQAVLGI 130
Query: 257 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 316
K +DW RPL + +RYA ED +L +Y+ + KL SD V
Sbjct: 131 ELPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEALLPKL---------SDDKRAWVL 181
Query: 317 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 376
+ ++ L ++E E +Y + Q L QQLAV+ L WR+ ARA ++
Sbjct: 182 EDGAELVANL-QRESDPEEAYREVK--QAWRLKPQQLAVLKVLTAWRERQARARNQPRNR 238
Query: 377 VLPNRTLIEIAKQLPTTAAKLRRL 400
VL +L +A+ P L R+
Sbjct: 239 VLREASLWPLARTQPRDLVTLARI 262
>gi|59712314|ref|YP_205090.1| ribonuclease D [Vibrio fischeri ES114]
gi|59480415|gb|AAW86202.1| ribonuclease D [Vibrio fischeri ES114]
Length = 373
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 117/260 (45%), Gaps = 14/260 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
F++V + + L E+ + + +D E + R+ L+Q+ +VD +++
Sbjct: 3 FEIVTQSQRLAEICQQASTKPFLMLDTEFVRTRTLYARLGLIQMFDGETLALVDPVEID- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
+ P L ++ K+ + KV+H D+ Q G M DT + L ++
Sbjct: 62 DLTP-LWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFLGYGLSTGFAK 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ + G+ +K DW RPL D+ L YA D HYLL +++ ++ +LS E
Sbjct: 121 LVSDYLGIELDKGEARTDWMARPLSDKQLHYAAADVHYLLPLFEKLQAELSQTQWEDAAY 180
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
V KR EK+ +E +YL I LN +QLA++ +WR AR
Sbjct: 181 QESALAVKKR---------EKQPDAEKAYLDIKN--AWQLNPKQLAILKMAAKWRLEEAR 229
Query: 369 ADDESTGYVLPNRTLIEIAK 388
D + +V+ +L ++A+
Sbjct: 230 KRDLAVNFVVKELSLWKLAR 249
>gi|308187080|ref|YP_003931211.1| RNase D [Pantoea vagans C9-1]
gi|308057590|gb|ADO09762.1| RNase D, processes tRNA precursor [Pantoea vagans C9-1]
Length = 373
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 128/293 (43%), Gaps = 26/293 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ L+++ + L ++ K + A+D E + R++ L+Q+ + ++D L +R
Sbjct: 3 YSLIDQDEQLADVCQKARQHAAVALDTEFVRTRTYYPQLGLIQLFDDHQLVLIDPLNIR- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDI-VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
P++ + D + K +H D+ V+L R FG+ M DT Q + S +
Sbjct: 62 DWSPFI-ALLTDTSVTKFLHAGGEDLEVFLHR-FGVLPTPMIDT-QILAAFSGQPLSWGF 118
Query: 249 --LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++ HF V +K DW RPL YA D HYLL I + I +E+
Sbjct: 119 ASMVAHFTQVELDKSESRTDWLARPLTQRQCEYAAADVHYLLPIARQLMIN----TEEAG 174
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLS---ENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
N L+E C L ++ L S + ++ I L +QLA + L WR
Sbjct: 175 NMAAALSE--------CDNLCQRRLDSVAPDEAWRDITN--AWQLRPRQLAALQRLAAWR 224
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVL 416
+AR D + +V+ L ++A+ +P + +L L S H R+ G L
Sbjct: 225 LKLAREKDMAVNFVVREEHLWKVARFMPGSLGELDHLGLSGHEI--RFHGKTL 275
>gi|375094980|ref|ZP_09741245.1| ribonuclease D [Saccharomonospora marina XMU15]
gi|374655713|gb|EHR50546.1| ribonuclease D [Saccharomonospora marina XMU15]
Length = 402
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 119/271 (43%), Gaps = 16/271 (5%)
Query: 132 LVEEVKDLKELAAKLKS-VDEFAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLRV 189
+V E + L+ +L + A+D E + L+Q+ + ++D + LR
Sbjct: 17 VVSEPEQLRRACDRLAAGSGSIAIDTERASGYRYWPRAYLVQLRREGSGTLLIDPIPLRD 76
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL 249
+ P L V D + V+H A +D+ L D G+ ++FDT A R+ ER +L L
Sbjct: 77 HLEP-LGAVLAD--TEWVLHAASQDLPCLA-DLGLRPPSLFDTELAGRLAGHERVALGTL 132
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ + G K + ADW RPLP + L YA D L+ + + ++ +L++ K
Sbjct: 133 VENLLGYKLEKGHSAADWSKRPLPTDWLNYAALDVELLVPLREKLEAELAAQGK------ 186
Query: 310 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 369
E ++ ++ R + + G+ A+ LA V L + RD +AR
Sbjct: 187 ---LEWARQEFEWVRTSGGQPAPRSEPWRRTSGIHKVR-TARGLAAVRALWQARDELARK 242
Query: 370 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
D + +LP+ +I P T A L+ L
Sbjct: 243 RDRAPSRILPDSAIINAVLADPRTTADLQAL 273
>gi|311739578|ref|ZP_07713413.1| ribonuclease D [Corynebacterium pseudogenitalium ATCC 33035]
gi|311305394|gb|EFQ81462.1| ribonuclease D [Corynebacterium pseudogenitalium ATCC 33035]
Length = 414
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 96/201 (47%), Gaps = 24/201 (11%)
Query: 207 VMHGADRDIV---WLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 263
++H A D+ WL G++ ++FDT A+R+ ER +L ++ V K Y
Sbjct: 90 IIHAAHSDLPCLGWL----GLFPGSIFDTELAARLAGFERPNLGTMVGELFDVELEKGYG 145
Query: 264 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE----VYKRS 319
+ADW L +E+ YA D LL + D ++ L+ E + D L E V + S
Sbjct: 146 DADWSTPQLSEELKAYAALDVELLLELADALRDILA----EQDKMDWALEEFSAIVQEHS 201
Query: 320 YDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 379
D Q + L S L + +QLA L RD IAR D + G VL
Sbjct: 202 GDFAPQPHTWRDLKGISSLR---------SGRQLAAARELWFKRDAIARRTDTAPGRVLA 252
Query: 380 NRTLIEIAKQLPTTAAKLRRL 400
N+TL+EIA+ LPTTA +L R+
Sbjct: 253 NKTLVEIARTLPTTAGELARV 273
>gi|378767004|ref|YP_005195469.1| ribonuclease D [Pantoea ananatis LMG 5342]
gi|365186482|emb|CCF09432.1| Ribonuclease D [Pantoea ananatis LMG 5342]
Length = 373
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 24/282 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ L++ L E+ K + A+D E + R++ L+Q+ + ++D L +R
Sbjct: 3 YSLIDNDDRLAEVCNKARQHTAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLPVR- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDI-VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
P++ E+ D K +H D+ V+L R F + M DT Q + S +
Sbjct: 62 DWSPFI-ELLTDTRVTKFLHAGGEDLEVFLHR-FAVLPQPMIDT-QILAAFSGQPLSWGF 118
Query: 249 --LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++ HF V +K DW RPL + +YA D HYLL I +L +++
Sbjct: 119 ASMVAHFTQVELDKSEARTDWLARPLTERQCQYAAADVHYLLPIAH----QLMQQVEQAG 174
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLS---ENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
N L+E C L ++ L S E+++ I L +QLA + L WR
Sbjct: 175 NMAAALSE--------CENLCQRRLDSLAPEDAWRDITN--AWQLRPRQLAALQRLAAWR 224
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 405
+AR D + +V+ L ++A+ +P + +L L S H
Sbjct: 225 LKVAREKDMAVNFVVREENLWKVARFMPGSQGELDHLGLSGH 266
>gi|302846316|ref|XP_002954695.1| hypothetical protein VOLCADRAFT_106481 [Volvox carteri f.
nagariensis]
gi|300260114|gb|EFJ44336.1| hypothetical protein VOLCADRAFT_106481 [Volvox carteri f.
nagariensis]
Length = 1044
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 29/136 (21%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTED---------- 179
V K L L +L+ + +D E + + G CL+Q+S +
Sbjct: 201 LHWVSSPKQLYWLGQRLRQERQIGLDTEASPLLCYHGRVCLIQLSVWDDTASPCDGGDDG 260
Query: 180 -------------------FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQR 220
++VD L LR VG L + DP KV+HG D+VWLQR
Sbjct: 261 GSSGCSSGSGGSGGGGGHVWLVDALALRGHVGAALGGLMADPRVVKVLHGGGNDVVWLQR 320
Query: 221 DFGIYLCNMFDTGQAS 236
DF +YL N+FDT +AS
Sbjct: 321 DFRVYLVNVFDTEKAS 336
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 222 FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY---QNADWRVRPLPDEMLR 278
F ++C +VL E +L LL G++ E Q ADWR RPLP +LR
Sbjct: 384 FEAHMCGPACFWLFLKVLGYENRALASLLSRIVGLDVGAEKAAGQRADWRRRPLPPALLR 443
Query: 279 YAREDTHYLLYIYDIMKIKLSSM 301
YA D YL Y+ D+++ +L+++
Sbjct: 444 YAAADVAYLPYLADVLRRELAAL 466
>gi|226366248|ref|YP_002784031.1| ribonuclease [Rhodococcus opacus B4]
gi|226244738|dbj|BAH55086.1| putative ribonuclease [Rhodococcus opacus B4]
Length = 428
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 107/251 (42%), Gaps = 18/251 (7%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVV-DTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+Q+ V+ D + + P L EV + ++H
Sbjct: 55 LAVDAERASGFRYSARAYLVQLRREGAGTVLLDPIPTAADLAP-LAEVIN--PLEWILHS 111
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
AD+D+ L + G+ +FDT A R+ ER L ++ G K + ADW R
Sbjct: 112 ADQDLPGLA-EIGLAPATLFDTELAGRLAGFERVGLAAIVERTLGFELRKGHGAADWSKR 170
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV-YKRSYDVCRQLYEK 329
PLPD L YA D L+ + + M +L E SD E + R R ++
Sbjct: 171 PLPDTWLNYAALDVEVLVELRNAMAAELG----EQGKSDWAAQEFEHIRLAGPPRPKPDR 226
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
+ HI L+ +QLA V L + R+ +AR D S VLP+ +I+ A +
Sbjct: 227 WRRTS----HITSLK----TQRQLAAVRSLWQAREDLARKRDVSPSRVLPDSAIIDAATK 278
Query: 390 LPTTAAKLRRL 400
P + LR L
Sbjct: 279 DPRSIEALRAL 289
>gi|386079174|ref|YP_005992699.1| ribonuclease D Rnd [Pantoea ananatis PA13]
gi|354988355|gb|AER32479.1| ribonuclease D Rnd [Pantoea ananatis PA13]
Length = 373
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 24/282 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ L++ L E+ K + A+D E + R++ L+Q+ + ++D L +R
Sbjct: 3 YSLIDNDDRLAEVCNKARQHTAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLPVR- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDI-VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
P++ E+ D K +H D+ V+L R F + M DT Q + S +
Sbjct: 62 DWSPFI-ELLTDTRVTKFLHAGGEDLEVFLHR-FAVLPQPMIDT-QILAAFSGQPLSWGF 118
Query: 249 --LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++ HF V +K DW RPL + +YA D HYLL I +L +++
Sbjct: 119 ASMVAHFTQVELDKSEARTDWLARPLTERQCQYAAADVHYLLPIAH----QLMQQVEQAG 174
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLS---ENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
N L+E C L ++ L S E+++ I L +QLA + L WR
Sbjct: 175 NMAAALSE--------CENLCQRRLDSLAPEDAWRDITN--AWQLRPRQLAALQRLAAWR 224
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 405
+AR D + +V+ L ++A+ +P + +L L S H
Sbjct: 225 LKVAREKDMAVNFVVREENLWKVARFMPGSQGELDHLGLSGH 266
>gi|291617685|ref|YP_003520427.1| Rnd [Pantoea ananatis LMG 20103]
gi|291152715|gb|ADD77299.1| Rnd [Pantoea ananatis LMG 20103]
Length = 373
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 24/282 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ L++ L E+ K + A+D E + R++ L+Q+ + ++D L +R
Sbjct: 3 YSLIDNDDRLAEVCNKARQHTAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLPVR- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDI-VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
P++ E+ D K +H D+ V+L R F + M DT Q + S +
Sbjct: 62 DWSPFI-ELLTDTRVTKFLHAGGEDLEVFLHR-FAVLPQPMIDT-QILAAFSGQPLSWGF 118
Query: 249 --LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++ HF V +K DW RPL + +YA D HYLL I +L +++
Sbjct: 119 ASMVAHFTQVELDKSEARTDWLARPLTERQCQYAAADVHYLLPIAH----QLMQQVEQAG 174
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLS---ENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
N L+E C L ++ L S E+++ I L +QLA + L WR
Sbjct: 175 NMAAALSE--------CENLCQRRLDSLAPEDAWRDITN--AWQLRPRQLAALQRLAAWR 224
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 405
+AR D + +V+ L ++A+ +P + +L L S H
Sbjct: 225 LKVAREKDMAVNFVVREENLWKVARFMPGSQGELDHLGLSGH 266
>gi|15964944|ref|NP_385297.1| ribonuclease D protein [Sinorhizobium meliloti 1021]
gi|384528902|ref|YP_005712990.1| ribonuclease D [Sinorhizobium meliloti BL225C]
gi|384536902|ref|YP_005720987.1| ribonuclease D protein [Sinorhizobium meliloti SM11]
gi|433612962|ref|YP_007189760.1| ribonuclease D [Sinorhizobium meliloti GR4]
gi|15074123|emb|CAC45770.1| Probable ribonuclease D [Sinorhizobium meliloti 1021]
gi|333811078|gb|AEG03747.1| ribonuclease D [Sinorhizobium meliloti BL225C]
gi|336033794|gb|AEH79726.1| ribonuclease D protein [Sinorhizobium meliloti SM11]
gi|429551152|gb|AGA06161.1| ribonuclease D [Sinorhizobium meliloti GR4]
Length = 383
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 119/270 (44%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
+++ DL+ +L +D E + +F + CL+Q+++ +VD + + +
Sbjct: 1 MIQTTADLEAACRELARSSYITIDTEFLRETTFWPVLCLIQMASPEMAVIVDPMAPGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ + +P KV H A +DI + + +FDT A+ V + S + L+
Sbjct: 61 APFF-ALMSNPDVVKVFHAARQDIEIIHHLGNLIPHPIFDTQVAAMVCGFGDSVSYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
+ +K + DW RPL D+ L YA D +L IY + +L + S ++
Sbjct: 120 NRIKNEQIDKSSRFTDWSRRPLTDKQLDYALADVTHLRDIYQYLTKELDREGRSSWLAEE 179
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ +YD L +N++ L+ +LAV+ + WR+ ARA
Sbjct: 180 MAILESRETYD---------LHPDNAWQR---LKMRVKKPIELAVLQKVAAWREREARAR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ G ++ + + EIA+Q P A L RL
Sbjct: 228 NVPRGRIIKDDAIYEIAQQQPKDAEALGRL 257
>gi|385674396|ref|ZP_10048324.1| ribonuclease D [Amycolatopsis sp. ATCC 39116]
Length = 407
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 116/263 (44%), Gaps = 16/263 (6%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFV-VDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD E + L+Q+ V VD + L ++GP L++V ++ V+H
Sbjct: 44 IAVDTERASGYRYWPKAYLVQLRREGSGTVLVDPIALEGRLGP-LQDVLNG--EEWVLHA 100
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
A +D+ L + + ++FDT A R+ ER +L L+ G + K + ADW R
Sbjct: 101 ASQDLPCLA-ELDLVPGSLFDTELAGRLAGYERVALGTLVEKLLGYHLEKGHSAADWSKR 159
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLP + L YA D L+ + + ++ +L + K + ++ ++ R +
Sbjct: 160 PLPVDWLNYAALDVELLIPLREKLEAELDAQGK---------LDWARQEFEAVRTAPQPP 210
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
SE + G+ A+ LA V L E RD +AR D + VLP+ ++
Sbjct: 211 PRSE-PWRRTSGIHKVR-TARGLAAVRALWEARDELARKRDRAPSRVLPDSAIVNAVLAE 268
Query: 391 PTTAAKLRRLLKSKHSYIERYMG 413
P + A+L+ L RY G
Sbjct: 269 PKSVAELQALPVFGGRVQRRYTG 291
>gi|392397230|ref|YP_006433831.1| ribonuclease D [Flexibacter litoralis DSM 6794]
gi|390528308|gb|AFM04038.1| ribonuclease D [Flexibacter litoralis DSM 6794]
Length = 449
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 4/174 (2%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGL-TCLMQISTRTEDFVVDTLKLRVQV 191
++ ++L++ A K ++ A+D E + ++ G CL+QI + + +++DT+KL +
Sbjct: 57 IKTFEELEKAALKWNKCNQIAIDTEFDDNNNYYGRHLCLVQIYDKDKIYLIDTVKLEGNI 116
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS--LEYL 249
P L V ++P +K+ H D++ + + N+ DT R L N L+ L
Sbjct: 117 NPLL-AVLENPNVEKIFHSCSSDLIVVGDVCNCAIKNIQDTALMYRFLLKSHNDIGLQSL 175
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303
+ + K+ Q +DW RPL L YA D YL +++I+K +L + +
Sbjct: 176 VEEKLNIELEKQEQVSDWAKRPLSKSQLIYAATDVIYLFELFEILKKELQELER 229
>gi|255325116|ref|ZP_05366222.1| ribonuclease D [Corynebacterium tuberculostearicum SK141]
gi|255297681|gb|EET76992.1| ribonuclease D [Corynebacterium tuberculostearicum SK141]
Length = 414
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 95/201 (47%), Gaps = 24/201 (11%)
Query: 207 VMHGADRDIV---WLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 263
++H A D+ WL G++ ++FDT A+R+ ER +L ++ V K Y
Sbjct: 90 IIHAAHSDLPCLGWL----GLFPGSIFDTELAARLAGFERPNLGTMVAELFDVELEKGYG 145
Query: 264 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE----VYKRS 319
+ADW L +E+ YA D LL + D ++ L+ E + D L E V + S
Sbjct: 146 DADWSTPQLSEELKAYAALDVELLLELADALRDILA----EQDKMDWALEEFSAIVQEHS 201
Query: 320 YDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 379
D Q + L S L + QLA L RD IAR D + G VL
Sbjct: 202 GDFAPQPHTWRDLKGISSLR---------SGSQLAAARELWFKRDAIARRTDTAPGRVLA 252
Query: 380 NRTLIEIAKQLPTTAAKLRRL 400
N+TL+EIA+ LPTTA +L R+
Sbjct: 253 NKTLVEIARTLPTTAGELARV 273
>gi|310287702|ref|YP_003938960.1| ribonuclease D [Bifidobacterium bifidum S17]
gi|309251638|gb|ADO53386.1| Ribonuclease D [Bifidobacterium bifidum S17]
Length = 428
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 8/180 (4%)
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
D G+ +FDT A+R+L L R L + H+ GV KE+ ADW RPLP + YA
Sbjct: 108 DIGLAPQALFDTEIAARMLGLHRFGLAAVTEHYLGVTFAKEHSAADWSYRPLPRDWRNYA 167
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 340
D L+ + M+ +L K+ +D + R+ +L I
Sbjct: 168 ALDVELLIELRRKMQRELKVQGKDGW-ADEEFRYALQTGMGPRRE-------HPVPWLRI 219
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ + Q LAV L E RD +ARA D + G +L + +++E A + P A + R +
Sbjct: 220 SHINTVSQDHQGLAVAKALWEKRDELARAYDIAPGLLLSDDSIVEAASRKPRNAREFRMI 279
>gi|398989100|ref|ZP_10692585.1| ribonuclease D [Pseudomonas sp. GM24]
gi|399012536|ref|ZP_10714856.1| ribonuclease D [Pseudomonas sp. GM16]
gi|398115369|gb|EJM05153.1| ribonuclease D [Pseudomonas sp. GM16]
gi|398148360|gb|EJM37041.1| ribonuclease D [Pseudomonas sp. GM24]
Length = 377
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 125/295 (42%), Gaps = 23/295 (7%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
+ + + L + A+ + + A+D E + +F + L+Q+ +++D L +
Sbjct: 8 IRDNESLAQFCAEWQQLPFVALDTEFMRVDTFYPIAGLLQVGDGKRAYLIDPLT--INAW 65
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LL 250
L + ++P KV+H D+ L R G MFDT A+ L L S+ Y L+
Sbjct: 66 QPLAALLENPAVLKVLHACSEDLEVLLRLTGSLPAPMFDTQLAAAYLNLG-FSMGYSRLV 124
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G+ K +DW RPL D + YA ED +L ++ ++ KL SD
Sbjct: 125 QEVLGIELPKGETRSDWLQRPLSDTQISYAAEDAVHLAEVFVQLRPKL---------SDD 175
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIY--GLQGAGLNAQQLAVVAGLCEWRDVIAR 368
V + ++ L E +Y L+ QLAV+ LC WR+ AR
Sbjct: 176 KFAWVLEDGAELVANLRR-----ETDPYEVYREAKLAWKLSRAQLAVLRELCAWRETEAR 230
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP-VLSIIKNS 422
A D ++ +L +A+ P A L + ++ H R G +L +IK S
Sbjct: 231 ARDLPRNRIVREHSLWPLARTQPDNLAALGK-IEDMHPRTVRQDGQFLLDLIKRS 284
>gi|345002758|ref|YP_004805612.1| 3'-5' exonuclease [Streptomyces sp. SirexAA-E]
gi|344318384|gb|AEN13072.1| 3'-5' exonuclease [Streptomyces sp. SirexAA-E]
Length = 424
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 87/206 (42%), Gaps = 12/206 (5%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
++H A +D+ L RD G+ ++FDT A R+ R L ++ + G K + D
Sbjct: 114 ILHAATQDLPCL-RDIGMVPTSLFDTELAGRLAGFPRVGLGAIVENLLGYALEKGHSAVD 172
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLPD LRYA D L+ + D ++ +L E + E +
Sbjct: 173 WSTRPLPDPWLRYAALDVELLVDLRDALEAEL-----ERQGKLEWALEEFDAIASAPPAP 227
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
K+ S +H +Q+AVV L RD +A+ D S G VL + +IE
Sbjct: 228 PRKDPWRRTSGMHKV------RRRRQIAVVRELWTARDQVAQRRDISPGKVLGDAAIIEA 281
Query: 387 AKQLPTTAAKLRRLLKSKHSYIERYM 412
A +P A L L H R +
Sbjct: 282 ALAMPVNAHALTALPGFGHRMGRRQL 307
>gi|334315734|ref|YP_004548353.1| ribonuclease D [Sinorhizobium meliloti AK83]
gi|407720134|ref|YP_006839796.1| ribonuclease D [Sinorhizobium meliloti Rm41]
gi|418401289|ref|ZP_12974820.1| ribonuclease D [Sinorhizobium meliloti CCNWSX0020]
gi|334094728|gb|AEG52739.1| ribonuclease D [Sinorhizobium meliloti AK83]
gi|359504807|gb|EHK77338.1| ribonuclease D [Sinorhizobium meliloti CCNWSX0020]
gi|407318366|emb|CCM66970.1| Ribonuclease D [Sinorhizobium meliloti Rm41]
Length = 383
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 119/270 (44%), Gaps = 14/270 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
+++ DL+ +L +D E + +F + CL+Q+++ +VD + + +
Sbjct: 1 MIQTTADLEAACRELARSSYITIDTEFLRETTFWPVLCLIQMASPEMAVIVDPMAPGIDL 60
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P+ + +P KV H A +DI + + +FDT A+ V + S + L+
Sbjct: 61 APFF-ALMSNPDVVKVFHAARQDIEIIHHLGNLIPHPIFDTQVAAMVCGFGDSVSYDQLV 119
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
+ +K + DW RPL D+ L YA D +L IY + +L + S ++
Sbjct: 120 NRIKNEQIDKSSRFTDWSRRPLTDKQLDYALADVTHLRDIYQYLTKELDREGRSSWLAEE 179
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ +YD L +N++ L+ +LAV+ + WR+ ARA
Sbjct: 180 MAILESRETYD---------LHPDNAWQR---LKMRVKKPIELAVLQKVAAWREREARAR 227
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ G ++ + + EIA+Q P A L RL
Sbjct: 228 NVPRGRIIKDDAIYEIAQQQPKDAEALGRL 257
>gi|268589713|ref|ZP_06123934.1| ribonuclease D [Providencia rettgeri DSM 1131]
gi|291314943|gb|EFE55396.1| ribonuclease D [Providencia rettgeri DSM 1131]
Length = 373
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 119/272 (43%), Gaps = 14/272 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++LV +L ++ + + A+D E + R++ L+Q+ + ++D L L
Sbjct: 3 YRLVTTDSELAQVCQEASNAPWLALDTEFVRTRTYYPQLGLLQLYDGKQVSLIDPL-LMT 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
P+ + + +P + K +H D+ DF M DT + L +
Sbjct: 62 DFSPF-KALLTNPEQLKFLHAGSEDLEVFMHDFDCVPEPMIDTQVVAAFLGYPISCGFAS 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ G+ +K DW RPL ++ YA D YLL + +I+ K++ +
Sbjct: 121 LVAEHLGIELDKSESRTDWLARPLSEKQCDYAAADVLYLLPLAEILMEKVTEAGYLEDAK 180
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
D V +R +K L E +Y++I+ L +QLA + L EWR A+
Sbjct: 181 DECQRVVARR---------QKALKPEKAYMNIHN--AWQLRDEQLACLQLLAEWRLNQAK 229
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
A D + +V+ L ++A+ LP++ +L L
Sbjct: 230 ARDMAVNFVVKEEHLWKVARYLPSSLGELDAL 261
>gi|260768989|ref|ZP_05877923.1| ribonuclease D [Vibrio furnissii CIP 102972]
gi|260617019|gb|EEX42204.1| ribonuclease D [Vibrio furnissii CIP 102972]
Length = 397
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 132/301 (43%), Gaps = 19/301 (6%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+++++++ DL+ + + + D +D E + R+F L+Q+ ++D L +
Sbjct: 29 YQIIDQLNDLERVCSLARDADVVMLDTEFVRTRTFYPQLGLIQLFDGENLSLIDPLAMD- 87
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
++ P++ E+ +D + KV+H DI + FG M DT + L ++
Sbjct: 88 EMTPFV-ELLQDTSVLKVLHACGEDIEVFKTSFGCVPFPMVDTQIMAAFLGYGLSTGFAA 146
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD--IMKIKLSSMPKESE 306
L H V +K DW RPL + L YA D YL+ +Y+ + K+ + + ++
Sbjct: 147 LAHDLLNVELDKSESRTDWLARPLSQKQLEYAAADVFYLMPMYEQLLEKVTQAGWWEAAQ 206
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
E R+ D E YL I G L ++LA++ L WR
Sbjct: 207 QESELQVEKRTRTTD-----------PEMVYLDIKG--AWQLKPKELAILKPLATWRYQE 253
Query: 367 ARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 426
A D + +V+ L+ IA+ + ++ H+ I R+ +++I+K ++Q
Sbjct: 254 AMNRDLALNFVIRENDLLTIARLALRSPKRMEEEGIDPHA-IRRHSTKMINIVKAALQTP 312
Query: 427 A 427
A
Sbjct: 313 A 313
>gi|257791482|ref|YP_003182088.1| ribonuclease D [Eggerthella lenta DSM 2243]
gi|317490632|ref|ZP_07949102.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
gi|325831419|ref|ZP_08164673.1| ribonuclease D [Eggerthella sp. HGA1]
gi|257475379|gb|ACV55699.1| ribonuclease D [Eggerthella lenta DSM 2243]
gi|316910256|gb|EFV31895.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
gi|325486673|gb|EGC89121.1| ribonuclease D [Eggerthella sp. HGA1]
Length = 381
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 113/260 (43%), Gaps = 48/260 (18%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTED-----FVVDTLKLRVQVGPYLREVFKDPTKKK 206
A+D E + +++ CL+Q++T E F VD LK+ L V ++ K
Sbjct: 22 LAIDTEFLREKTYYAKLCLIQLATDDETAIVDPFAVDDLKV-------LAPVLRNENVMK 74
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL-KLERNSLEYLLHHFCGVNANKEYQNA 265
+ H ++D+ L R+ G+ +FDT A+ +L ++ L+H CGV K
Sbjct: 75 LFHAGNQDLEILLREVGVLPHPLFDTQVAAALLGHTQQIGYAALVHAECGVTLKKIDSFT 134
Query: 266 DWRVRPLPDEMLRYAREDTHYLLYIYDIMKI------KLSSMPKESENSDTPL------T 313
DW RPL D L YA +D YL +Y+ M+ +LS + ++ E+ P
Sbjct: 135 DWSRRPLSDSQLEYAADDVVYLPRMYERMRAQLVELGRLSWLDRDFEDLADPARYAANER 194
Query: 314 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 373
E YKR V + L+ +QL+ + WR++ A+ D
Sbjct: 195 ERYKRLKRV-----------------------SQLSRRQLSAAREVAAWRELEAQRRDVP 231
Query: 374 TGYVLPNRTLIEIAKQLPTT 393
+V+ + ++E K+ P +
Sbjct: 232 RKWVVTDEQIVEACKREPRS 251
>gi|417845412|ref|ZP_12491441.1| Ribonuclease D [Haemophilus haemolyticus M21639]
gi|341955248|gb|EGT81709.1| Ribonuclease D [Haemophilus haemolyticus M21639]
Length = 380
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 122/272 (44%), Gaps = 18/272 (6%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
F ++ + L E+ + A+D E + ++ L+Q+ ++D L +
Sbjct: 11 FTVITDNTSLLEICNLAQQQSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLAI-T 69
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
P++ + +P KV+H D++ + F C M DT +R L L ++ L
Sbjct: 70 DFSPFV-ALLSNPKVLKVLHSCSEDLLVFLQKFDQLPCPMIDTQIMARFLGLGTSAGLAK 128
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES--- 305
L + + +K +W RPL D L+YA D YLL +Y I++ +L+ P E
Sbjct: 129 LAQQYLNIEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVI 188
Query: 306 ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
++ + L + +K L E++ SE +YL I LN +L+ + L +WR
Sbjct: 189 DDCELALAKTHK--------LQERD--SEKAYLDIPN--AWKLNLLELSRLRILAQWRQN 236
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
+ D + Y++ + L ++AK P +++
Sbjct: 237 VGIERDLALSYIVKSDNLWKVAKNNPRNTSEM 268
>gi|197335934|ref|YP_002156528.1| ribonuclease D [Vibrio fischeri MJ11]
gi|423686479|ref|ZP_17661287.1| ribonuclease D [Vibrio fischeri SR5]
gi|197317424|gb|ACH66871.1| ribonuclease D [Vibrio fischeri MJ11]
gi|371494547|gb|EHN70145.1| ribonuclease D [Vibrio fischeri SR5]
Length = 373
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 117/260 (45%), Gaps = 14/260 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
F++V + + L E+ + + +D E + R+ L+Q+ +VD +++
Sbjct: 3 FEIVTQSQRLAEICQQASTKPFLMLDTEFVRTRTLYARLGLIQMFDGETLALVDPVEID- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
+ P L ++ K+ + KV+H D+ Q G M DT + L ++
Sbjct: 62 DLTP-LWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFLGYGLSTGFAK 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ + G+ +K DW RPL D+ L YA D HYLL +++ ++ +LS E
Sbjct: 121 LVSDYLGIELDKGEARTDWMARPLSDKQLHYAAADVHYLLPLFEKLQAELSQTQWEDAAY 180
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
V KR EK+ +E +YL I LN +QLA++ +WR AR
Sbjct: 181 QESTLAVKKR---------EKQPDAEKAYLDIKN--AWQLNPKQLAILKMAAKWRLEEAR 229
Query: 369 ADDESTGYVLPNRTLIEIAK 388
D + +V+ +L ++A+
Sbjct: 230 KRDLAVNFVVKELSLWKLAR 249
>gi|387592700|gb|EIJ87724.1| hypothetical protein NEQG_02271 [Nematocida parisii ERTm3]
gi|387595329|gb|EIJ92954.1| hypothetical protein NEPG_02353 [Nematocida parisii ERTm1]
Length = 471
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 124/286 (43%), Gaps = 33/286 (11%)
Query: 154 VDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADR 213
VD++ +++RS+ G TC +Q++T ++ D ++LR L + +P+ KV + A
Sbjct: 212 VDIKTHKFRSYSGFTCYIQVATLESIYLFDMIELR--NNSELLTFWSNPSVVKVFYKATE 269
Query: 214 DIVWLQRDFGIYLCNMFDT----GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRV 269
+ WL++D + D G V L R + + G K+ Q DWR
Sbjct: 270 KVYWLKKDLQYTVKAYVDLLSIYGYPEEVTNLGRAVM-----YATGRKLRKQLQLMDWRY 324
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
+P+ EM E YLL + ++ M K+ E + Y+ + E
Sbjct: 325 KPISVEMCTDLTEQVGYLL-------LSVAGMAKKCTE------EQFVSGYNYKAKKIES 371
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
+L E L N + + L RD IA+ +DES +++ ++ L+ K+
Sbjct: 372 DLSPEEFLL--------SKNIEPAEISVKLHMLRDFIAKQEDESPQFLMTDKQLVRFIKE 423
Query: 390 LPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQK 435
PTT ++ L K+ + + ++++ +S ++F + A K
Sbjct: 424 QPTTQEQVFSLFKNISPLFKANLNNFINLL-HSTHKTSSFNMTALK 468
>gi|372277826|ref|ZP_09513862.1| ribonuclease D [Pantoea sp. SL1_M5]
Length = 373
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 126/293 (43%), Gaps = 26/293 (8%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ L+++ L ++ K + A+D E + R++ L+Q+ + ++D L +R
Sbjct: 3 YSLIDQDDQLADVCQKARQHAAVALDTEFVRTRTYYPQLGLIQLFDDQQLVLIDPLNIR- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDI-VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
P++ + D K +H D+ V+L R FG+ M DT Q + S +
Sbjct: 62 DWSPFI-ALLTDTRVTKFLHAGGEDLEVFLHR-FGVLPTPMIDT-QILAAFSGQPLSWGF 118
Query: 249 --LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++ HF V +K DW RPL YA D HYLL I + I +E+
Sbjct: 119 ASMVAHFTQVELDKSESRTDWLARPLTQRQCEYAAADVHYLLPIARQLMIN----TEEAG 174
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLS---ENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
N L+E C L ++ L S + ++ I L +QLA + L WR
Sbjct: 175 NMSAALSE--------CDNLCQRRLDSLSPDEAWRDITN--AWQLRPRQLAALQRLAAWR 224
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVL 416
+AR D + +V+ L ++A+ +P + +L L S H R+ G L
Sbjct: 225 LKLAREKDMAVNFVVREEHLWKVARFMPGSLGELDHLGLSGHEI--RFHGKAL 275
>gi|209694623|ref|YP_002262551.1| ribonuclease D (rnase d) [Aliivibrio salmonicida LFI1238]
gi|208008574|emb|CAQ78749.1| ribonuclease D (rnase d) [Aliivibrio salmonicida LFI1238]
Length = 374
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 117/260 (45%), Gaps = 14/260 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
F++V+ + L E+ + + +D E + R+ L+Q+ +VD +++
Sbjct: 3 FEIVKHSQRLAEICQQASNKPFLMLDTEFVRTRTLYARLGLIQMFDGETLALVDPVEID- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
+ P L ++ K+ + KV+H D+ Q G M DT + L ++
Sbjct: 62 DLTP-LWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFLGYGLSTGFAK 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ + GV+ +K DW RPL D+ L YA D HYLL +++ ++ +L+ E
Sbjct: 121 LVSDYLGVDLDKGESRTDWMARPLSDKQLDYAAADVHYLLPLFEKLQAELAQTEWEKAAY 180
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
L V KR EK+ E +YL I LN +QLA++ +WR AR
Sbjct: 181 QESLLAVKKR---------EKQPDPEKAYLDIKN--AWQLNGKQLAILKMAAQWRLEEAR 229
Query: 369 ADDESTGYVLPNRTLIEIAK 388
D + +V+ L ++A+
Sbjct: 230 KRDLAVNFVVQELNLWKLAR 249
>gi|388543349|ref|ZP_10146640.1| ribonuclease D [Pseudomonas sp. M47T1]
gi|388278661|gb|EIK98232.1| ribonuclease D [Pseudomonas sp. M47T1]
Length = 377
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 135/296 (45%), Gaps = 22/296 (7%)
Query: 133 VEEVKDLKELA---AKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ ++D + LA A+ + + A+D E + +F + L+QI +++D L ++
Sbjct: 5 IHWIRDDESLARHCAEWQRLPYVALDTEFMRVDTFYPIAGLIQIGDGACAWLIDPLSIK- 63
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY- 248
Q P R + +DP KV+H D+ L R G +FDT A+ L L S+ Y
Sbjct: 64 QWQPLAR-LLEDPGVIKVVHACSEDLEVLVRLTGSLPAPLFDTQLAAAYLNLG-FSMGYS 121
Query: 249 -LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
L+ + K +DW RPL D + YA ED +L +Y+ ++ +LS
Sbjct: 122 RLVQAVLDIELPKGETRSDWLQRPLSDTQISYAAEDAVHLAEVYEKLRPQLS-------- 173
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
D T V + ++ QL + + L+ L+ QQL V+ LC WR+ A
Sbjct: 174 -DERYTWVLEDGAELVAQLRRE---VDPYELYRDAKLAWKLSRQQLGVLRELCAWREREA 229
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP-VLSIIKNS 422
RA D ++ +L +A+ P A L + ++ H R G +L++IK++
Sbjct: 230 RARDLPRNRIVREHSLWPLARTQPDNLAALAK-IEDMHPRTVRQDGELLLNLIKDA 284
>gi|357021611|ref|ZP_09083842.1| 3'-5' exonuclease [Mycobacterium thermoresistibile ATCC 19527]
gi|356479359|gb|EHI12496.1| 3'-5' exonuclease [Mycobacterium thermoresistibile ATCC 19527]
Length = 437
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 90/211 (42%), Gaps = 20/211 (9%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H AD+D+ L + G+ ++DT A R+ R +L ++ G+ K + AD
Sbjct: 125 VLHAADQDLPCLA-ELGMRPPRLYDTELAGRLAGFARVNLATMVQQLLGLQLMKGHGAAD 183
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP E L YA D LL + + L K E ++ R
Sbjct: 184 WSKRPLPAEWLNYAALDVEVLLELRAAIAEVLDDQGK---------AEWAAEEFEYLRT- 233
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
YE + + G+ N + LA V L RD IAR D + G +LP+ +I+
Sbjct: 234 YEAPPTRRDRWRRTSGIHKV-RNGRALAAVRELWVTRDQIARRRDIAPGRILPDSAIIDA 292
Query: 387 AKQLPTTAAKLRRL--------LKSKHSYIE 409
A P T ++L L +S H ++E
Sbjct: 293 ATTDPKTISELTALPVFGGAKQRRSAHIWLE 323
>gi|149191139|ref|ZP_01869398.1| ribonuclease D [Vibrio shilonii AK1]
gi|148835067|gb|EDL52045.1| ribonuclease D [Vibrio shilonii AK1]
Length = 289
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 118/260 (45%), Gaps = 14/260 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+++V E+ +L+ + K + D +D E + R+F L+Q+ + ++D L +
Sbjct: 3 YQIVTELAELESVCNKARESDVVMLDTEFVRIRTFYPKLGLIQLYDGEQLSLIDPLTIS- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
P++ E+ +D + KV+H D+ FG M DT + L ++
Sbjct: 62 DFTPFI-ELLQDASVLKVLHACGEDLEVFVNSFGCMPFPMVDTQIMAAFLGHGLSTGFAA 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ + GV +K ADW RPL D+ L YA D +YL +Y KL + + +
Sbjct: 121 LVDEYLGVELDKSESRADWVARPLTDKQLDYAAADVYYLWPLY----FKLFAQVEAKDWW 176
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
D ++ D+ Q K +++YL I G+ L +QLA++ L WR A
Sbjct: 177 DAA-----QQESDLLMQKRGKTPNPDSAYLDIKGVW--QLKRKQLAILKPLATWRMNEAL 229
Query: 369 ADDESTGYVLPNRTLIEIAK 388
D + +V+ + L IA+
Sbjct: 230 KRDLALNFVIKEQELWSIAR 249
>gi|333907899|ref|YP_004481485.1| ribonuclease D [Marinomonas posidonica IVIA-Po-181]
gi|333477905|gb|AEF54566.1| ribonuclease D [Marinomonas posidonica IVIA-Po-181]
Length = 380
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 110/244 (45%), Gaps = 18/244 (7%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
AVD E + ++ +T L+QIS + ++D L + P L+ + + KV H
Sbjct: 32 IAVDTEFIRRTTYFPITGLIQISEGEKAVLIDPLGID-DWAP-LKALMVNTAVMKVFHAC 89
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRV 269
D+ R G+ +DT Q + SL Y L+H + + K+ +DW
Sbjct: 90 SEDLDVFDRLLGVLPTPFYDT-QVGEAYVSAQWSLSYVKLIHEYLRIEVAKDETRSDWTQ 148
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
RPL D RYA D YL +Y + +L K+ + D L + C L +
Sbjct: 149 RPLTDAQKRYAALDVVYLAKVYPMQVARL----KDKKMLDWALED--------CDTLKWQ 196
Query: 330 ELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 388
++ + + G++ A L+ + L ++ L WRD AR +D G +L +RTL IAK
Sbjct: 197 YQMNSDPEQNWAGVKTAWRLSPEGLTLLRLLFLWRDEQARKEDVPKGQILKDRTLWSIAK 256
Query: 389 QLPT 392
LPT
Sbjct: 257 ILPT 260
>gi|213969693|ref|ZP_03397828.1| ribonuclease D [Pseudomonas syringae pv. tomato T1]
gi|301383544|ref|ZP_07231962.1| ribonuclease D [Pseudomonas syringae pv. tomato Max13]
gi|302062110|ref|ZP_07253651.1| ribonuclease D [Pseudomonas syringae pv. tomato K40]
gi|302130100|ref|ZP_07256090.1| ribonuclease D [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|213925501|gb|EEB59061.1| ribonuclease D [Pseudomonas syringae pv. tomato T1]
Length = 377
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 129/302 (42%), Gaps = 26/302 (8%)
Query: 133 VEEVKDLKELA---AKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+ ++D LA A+ +S+ A+D E + +F + L+QI +++D L +
Sbjct: 5 IHWIRDDDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN- 63
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY- 248
P L + ++P KV+H D+ L R G +FDT A+ L L S+ Y
Sbjct: 64 DWAP-LSALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLG-FSMGYS 121
Query: 249 -LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
L+ ++ K +DW RPL D + YA ED +L ++ I++ +LS
Sbjct: 122 RLVQEVLNIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAELFAILRPRLSDDKYAWLL 181
Query: 308 SD-TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
D L +R D + +L L+ QLAV+ LC WR+V
Sbjct: 182 DDGAELVANLRREVDPYEVYRDAKL-------------AWKLSRAQLAVLRELCAWREVQ 228
Query: 367 ARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 426
ARA + ++ +L +AK P L R ++ H R+ G + +Q A
Sbjct: 229 ARARNLPRNRIIREHSLWPLAKTQPDNLGALAR-IEDMHPRTVRHDG---EFLLELIQTA 284
Query: 427 AN 428
AN
Sbjct: 285 AN 286
>gi|381397371|ref|ZP_09922783.1| 3'-5' exonuclease [Microbacterium laevaniformans OR221]
gi|380775356|gb|EIC08648.1| 3'-5' exonuclease [Microbacterium laevaniformans OR221]
Length = 398
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 121/269 (44%), Gaps = 21/269 (7%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTED-FVVDTLKLRVQVGPYLREVFKDPTKKKVMHG 210
AVD+E + L+Q+ R F+VD + + P L+E D T ++H
Sbjct: 27 VAVDVERASGFRYSQRAYLIQVYRRGAGVFLVDPPAVG-DLSP-LQEAIGDITW--ILHA 82
Query: 211 ADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 270
A +D+ L R+ + +FDT A+R+L ER L ++ G+ K + ADW R
Sbjct: 83 ASQDLPSL-REENLEPPQIFDTELAARLLGHERVGLGAVVEDTLGITLAKAHSAADWSTR 141
Query: 271 PLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 330
PLP L YA D +L+ ++++++ +L K T++ + ++ R K
Sbjct: 142 PLPQPWLEYAALDVLHLVDVFEVLRDELEEQGK---------TDIAAQEFETVRTRPVKP 192
Query: 331 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390
E + + GL + LA+ L R+ AR D S G ++P+R L+ +
Sbjct: 193 -PREEPWRRLSGLHTVR-GRRALAIARALWIAREEYAREQDTSPGRLVPDRALVAVVIAD 250
Query: 391 PTTAAKLRRLL----KSKHSYIERYMGPV 415
P T L R+ ++ S ++R+ +
Sbjct: 251 PKTKQDLARVKDFTGRASRSQLDRWWAAI 279
>gi|336124579|ref|YP_004566627.1| ribonuclease D [Vibrio anguillarum 775]
gi|335342302|gb|AEH33585.1| Ribonuclease D [Vibrio anguillarum 775]
Length = 372
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 135/301 (44%), Gaps = 17/301 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ + DL+ + + D +D E + R+F L+Q+ ++D L
Sbjct: 3 YQIITQPNDLQRVCLAARDADVVMLDTEFVRVRTFYPQLGLIQLYDGENLSLIDPLAFD- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
+ P++ E+ +D + KV+H D+ FG M DT + L ++
Sbjct: 62 DMAPFV-ELLQDTSVLKVLHACGEDLEVFHNAFGCTPFPMVDTQVMAAFLGHGLSTGFAA 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM-PKESEN 307
L++ F G+ +K DW RPL + L YA D YLL IY+ + K++ ++
Sbjct: 121 LVNEFLGIEIDKSESRTDWLARPLSQKQLDYAAADVFYLLPIYEKLLDKVTQAGWWQAAQ 180
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
++ L V KR K+ + +YL I G L Q+LA++ L WR A
Sbjct: 181 QESELLSV-KRI---------KQTNPDLAYLDIKG--AWQLIPQELAILKPLATWRYEEA 228
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 427
D + +V+ L+ IA+ T+A+++ S I+R+ +++++K Q A
Sbjct: 229 VRRDLALNFVVKETDLLTIARLGLTSASRMIDEGADPRS-IQRHSAKIIALVKAGQQTPA 287
Query: 428 N 428
+
Sbjct: 288 D 288
>gi|414071398|ref|ZP_11407368.1| ribonuclease D [Pseudoalteromonas sp. Bsw20308]
gi|410806239|gb|EKS12235.1| ribonuclease D [Pseudoalteromonas sp. Bsw20308]
Length = 376
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 126/276 (45%), Gaps = 22/276 (7%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++L+E L ++K+ A+D E + R+ L+Q+ ++D L
Sbjct: 3 YQLIETQNQLNTFVEQIKNKPILAIDTEFMRRRTLYPEVALIQVFDGEHLALIDPL---A 59
Query: 190 QVGPY-LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
++ + ++ KDPT KV+H DI Q+ G +FDT A ++L E N + +
Sbjct: 60 ELSLFDFWQILKDPTVLKVLHSPSEDIEVFQKYAGFVPAPLFDTQFALQLLG-EGNCMGF 118
Query: 249 --LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM--KIKLSSMPKE 304
++ G+ +K +W RPL + L YA DT +LL + ++ +IK + +
Sbjct: 119 ALMVKELLGIEIDKSESRTNWLQRPLTTKQLDYAAADTFHLLPCFKLIIERIKAADLFDI 178
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
N + KR++ +L K++ +N++ L +LAV+ L WR
Sbjct: 179 VINESELIAN--KRAFQTPDELLYKDI--KNAW---------QLKPHELAVLKELAVWRR 225
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
A + + +VL + EIAK+ P++ LR++
Sbjct: 226 NKAIRKNLALNFVLKEHNMTEIAKRGPSSLNALRQI 261
>gi|302846314|ref|XP_002954694.1| hypothetical protein VOLCADRAFT_106479 [Volvox carteri f.
nagariensis]
gi|300260113|gb|EFJ44335.1| hypothetical protein VOLCADRAFT_106479 [Volvox carteri f.
nagariensis]
Length = 756
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 29/137 (21%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTED---------- 179
V K L L +L+ + +D E + + G CL+Q+S +
Sbjct: 201 LHWVSSPKQLYWLGQRLRQERQIGLDTEASPLLCYHGRVCLIQLSVWDDTASPCDGGDDG 260
Query: 180 -------------------FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQR 220
++VD L LR VG L + DP KV+HG D+VWLQR
Sbjct: 261 GSSGCSSGSGGSGGGGGHVWLVDALALRGHVGAALGGLMADPRVVKVLHGGGNDVVWLQR 320
Query: 221 DFGIYLCNMFDTGQASR 237
DF +YL N+FDT +AS+
Sbjct: 321 DFRVYLVNVFDTEKASQ 337
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 222 FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY---QNADWRVRPLPDEMLR 278
F ++C +VL E +L LL G++ E Q ADWR RPLP +LR
Sbjct: 384 FEAHMCGPACFWLFLKVLGYENRALASLLSRIVGLDVGAEKAAGQRADWRRRPLPPALLR 443
Query: 279 YAREDTHYLLYIYDIMKIKLSSM 301
YA D YL Y+ D+++ +L+++
Sbjct: 444 YAAADVAYLPYLADVLRRELAAL 466
>gi|289768333|ref|ZP_06527711.1| ribonuclease [Streptomyces lividans TK24]
gi|289698532|gb|EFD65961.1| ribonuclease [Streptomyces lividans TK24]
Length = 428
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 12/194 (6%)
Query: 207 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 118 VLHAATQDLPCL-REIGMVPTRIFDTELAGRLAGFPRVGLGAMVENVLGFVLEKGHSAVD 176
Query: 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 326
W RPLP+ LRYA D L+ + D ++ +L K E ++ +D
Sbjct: 177 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWARQEFDAIASA 227
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
E ++ + G+ +QLAVV L + RD IA+ D S G VL + ++E
Sbjct: 228 PPAE-PRKDPWRRTSGMHKV-RRRRQLAVVRELWQARDRIAQRRDVSPGKVLGDAAIVEA 285
Query: 387 AKQLPTTAAKLRRL 400
A LP A L L
Sbjct: 286 ALALPPNAHALAAL 299
>gi|316933724|ref|YP_004108706.1| ribonuclease D [Rhodopseudomonas palustris DX-1]
gi|315601438|gb|ADU43973.1| ribonuclease D [Rhodopseudomonas palustris DX-1]
Length = 387
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 119/272 (43%), Gaps = 18/272 (6%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + L + A+L VD E + +F L C++Q+++ + V+D L + +
Sbjct: 3 LISTSEQLADACARLARHPVITVDTEFLRETTFYPLLCVVQMASAEDALVIDALADGIDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--L 249
P+ ++ + KV H A +DI + GI +FDT A+ VL +S+ Y L
Sbjct: 63 KPFF-DLMANEQVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVLGYG-DSIAYDQL 120
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 309
+ G +K ++ DW RPL E + YA D +L ++ + L + S+
Sbjct: 121 VERITGHRPDKTHRFTDWSRRPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDWVSE 180
Query: 310 TPLTEVYKRSYDVC-RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
+YDV + +E+ L+ ++LAV+ + WR+ A+
Sbjct: 181 EMEVLTSPSTYDVHPERAWER-------------LKTRVRKPKELAVLMEIAAWREQEAQ 227
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ D VL + L +IA PT+ KL L
Sbjct: 228 SRDVPRSRVLKDDALGDIATHAPTSLEKLANL 259
>gi|414341731|ref|YP_006983252.1| ribonuclease D [Gluconobacter oxydans H24]
gi|411027066|gb|AFW00321.1| ribonuclease D [Gluconobacter oxydans H24]
gi|453329592|dbj|GAC88242.1| ribonuclease D [Gluconobacter thailandicus NBRC 3255]
Length = 400
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 126/287 (43%), Gaps = 22/287 (7%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
+V +++ L KLK +D E + +++ CL+Q++ + V+DTL + +
Sbjct: 13 IVTSSEEVARLCNKLKQEPFVTIDTEFVREKTYWPELCLVQLAGEEDVAVIDTLAPGIDL 72
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P L E+ +P KV H A +D+ F ++FDT A+ V ++ + L+
Sbjct: 73 AP-LGELLDEPGCIKVFHAARQDLEIFLHIFDRLPQSLFDTQVAAMVAGFGDQVGYDSLV 131
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESE 306
G +K ++ +DW RPL + YA D +L +Y ++ +L + ++E
Sbjct: 132 GAITGQAIDKAHRFSDWSARPLTKAQIAYAAADVTHLRTVYLALRQQLEDEGRLRWADAE 191
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
+ E ++ R+L+EK L+ N + L ++ + WR+
Sbjct: 192 QAVLTSEETFRPDP---RRLWEK-------------LKARTNNRRMLGILREIVAWREQE 235
Query: 367 ARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 413
A+ D V+ + +L+EIA P + L R+ + E MG
Sbjct: 236 AQNADIPRQRVIRDESLLEIAAIKPNSIEALARVRGVTRGFAEGKMG 282
>gi|213692580|ref|YP_002323166.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|384199780|ref|YP_005585523.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|213524041|gb|ACJ52788.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|320458732|dbj|BAJ69353.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
Length = 433
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 8/180 (4%)
Query: 221 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 281 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 340
D L+ + +M+ L + K+ ++ + S+ + L ++ L +L I
Sbjct: 172 ALDVEVLIELETLMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-LHPIPWLRI 223
Query: 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 224 SRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLTDSSIIEAATNKPHNAAQFRAL 283
>gi|383819190|ref|ZP_09974466.1| 3'-5' exonuclease [Mycobacterium phlei RIVM601174]
gi|383337161|gb|EID15542.1| 3'-5' exonuclease [Mycobacterium phlei RIVM601174]
Length = 420
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 131/307 (42%), Gaps = 31/307 (10%)
Query: 109 FVDKDIGDVEAVKPPSLEQTPF--------KLVEEVKDLKELAAKLKSVD-EFAVDLEHN 159
VD + D E + E TP L V +++ +A L S FAVD E
Sbjct: 1 MVDAEPADSEQAQTSEPEPTPLLAPRDGMPALSVSVDEIRRVAELLDSGHGPFAVDAERA 60
Query: 160 QYRSFLGLTCLMQISTRTEDFV-VDTLK-----LRVQVGPYLREVFKDPTKKKVMHGADR 213
+ L+QI V +D + +RV +GP + EV + T + ++H AD+
Sbjct: 61 SGFRYSNRAYLVQIRREGAGTVLIDPVSHGGDPVRV-LGP-VAEVLR--TDEWILHAADQ 116
Query: 214 DIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLP 273
D+ L + G+ ++DT A R+ E+ +L ++ G+ K + ADW RPLP
Sbjct: 117 DLPCLA-ELGMRPTRLYDTELAGRLAGYEKVNLAAMVQRLLGLQLMKGHGAADWSKRPLP 175
Query: 274 DEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS 333
DE L YA D L+ + + L K + ++ ++ R +E
Sbjct: 176 DEWLNYAALDVEVLIDLRHAVAAVLEEQGKSAWAAE---------EFEHLRT-FEPTPTR 225
Query: 334 ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 393
+ + G+ N + LA V L RD IA+ D + G +LP+ +I+ A P T
Sbjct: 226 RDRWRRTSGIHKVR-NQRALAAVRELWITRDQIAQRRDIAPGRILPDSAIIQAATADPDT 284
Query: 394 AAKLRRL 400
+L L
Sbjct: 285 VERLTAL 291
>gi|121601718|ref|YP_989156.1| ribonuclease D [Bartonella bacilliformis KC583]
gi|421760967|ref|ZP_16197774.1| ribonuclease D [Bartonella bacilliformis INS]
gi|120613895|gb|ABM44496.1| ribonuclease D [Bartonella bacilliformis KC583]
gi|411173800|gb|EKS43841.1| ribonuclease D [Bartonella bacilliformis INS]
Length = 391
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 124/286 (43%), Gaps = 29/286 (10%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
+L+ + KDL+ A L++ D VD E + +F CL+Q+++ ++D + +
Sbjct: 1 MELITKTKDLEIAIATLRNSDFVTVDTEFIRETTFWPQLCLIQLASPNSTALIDPMVPDI 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEY 248
+ P+ ++ D KV H A +DI + I +FDT A + + S +
Sbjct: 61 DLQPFF-DLMIDKNIVKVFHAARQDIEIIYHLGRIIPFPLFDTQIAGAICGFGDSISYDQ 119
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS------MP 302
+++H G + +K + DW RPL ++ + YA D YL +Y +K +L M
Sbjct: 120 IVYHCTGQHLDKSSRFTDWSCRPLSEKQILYALADVTYLRDVYLSLKKQLEESKRFHWMD 179
Query: 303 KESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEW 362
E TP T YD+ K++ +G + A++ + W
Sbjct: 180 GEMAILSTPTT------YDIPEDEAWKKV------------KGRVKKPCEFAILQKIAAW 221
Query: 363 RDVIARADDESTGYVLPNRTLIEIAKQLP---TTAAKLRRLLKSKH 405
R+ AR + +++ + LIEIA Q P LR + KS H
Sbjct: 222 REHEARKYNVPRRHIIKDECLIEIAIQKPKDEYALKCLRNINKSWH 267
>gi|156973677|ref|YP_001444584.1| ribonuclease D [Vibrio harveyi ATCC BAA-1116]
gi|156525271|gb|ABU70357.1| hypothetical protein VIBHAR_01380 [Vibrio harveyi ATCC BAA-1116]
Length = 382
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 128/300 (42%), Gaps = 15/300 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ + KDL+E+ A + D +D E + R++ L+Q+ + ++D +L
Sbjct: 13 YQIITKNKDLEEVCALAREADVVMLDTEFVRIRTYYPQLGLIQLFDGKQLSLIDPTELTD 72
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 248
E+ KD + KV+H D+ Q FG M DT + L ++
Sbjct: 73 MTS--FVELLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFAT 130
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ + GV +K DW RPL + L YA D HYL+ +Y+ + K+ +
Sbjct: 131 LVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKV---------N 181
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
+ E ++ D+ + + EN+YL I G L +LA++ L WR A
Sbjct: 182 EAGWWEAVQQESDLLVSKRIRNVNEENAYLDIKG--AWQLRPTELAILKPLATWRYREAI 239
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 428
D + ++ L+ +A+ L T K I R+ + I+K + Q A+
Sbjct: 240 KRDLALNFIFKEGDLLTVAR-LGLTGFKKMEAEGIDIRAINRHGARIAGIVKQAKQTPAD 298
>gi|374291597|ref|YP_005038632.1| Ribonuclease D [Azospirillum lipoferum 4B]
gi|357423536|emb|CBS86395.1| Ribonuclease D [Azospirillum lipoferum 4B]
Length = 396
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 110/273 (40%), Gaps = 18/273 (6%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
L+ L+ L + VD E + +++ CL+Q+ +D L +
Sbjct: 1 MTLITTTDALQAFCQSLAGAEYITVDTEFLREKTYWPQLCLVQVGGPDGAVAIDPLAEGI 60
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEY 248
+ P L + DP+ KV H A +D+ G +FDT A+ V E E
Sbjct: 61 DLAP-LFALMSDPSVLKVFHAARQDVEIFWHLSGQIPHPLFDTQVAAMVCGFGESVGYET 119
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES--E 306
L+ G +K + DW RPL + L YA D +L Y+ +K +L+ + E
Sbjct: 120 LVTKLAGARIDKSSRFTDWSHRPLTERQLTYALSDVIHLRPAYEKLKRRLARSGRSHWLE 179
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
LT+ D E+SY+ L+ + +A++ L WR+
Sbjct: 180 EEMAILTDPATYQVD-----------PESSYMR---LKVRTNKPRFMAILKELAAWRERE 225
Query: 367 ARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 399
A+ D+ VL + L+EIA PTT L R
Sbjct: 226 AQRRDQPRSRVLRDEALLEIAAHAPTTVDDLAR 258
>gi|416249475|ref|ZP_11636572.1| ribonuclease D [Moraxella catarrhalis CO72]
gi|326575647|gb|EGE25570.1| ribonuclease D [Moraxella catarrhalis CO72]
Length = 407
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 135/298 (45%), Gaps = 27/298 (9%)
Query: 129 PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLR 188
P V+ DL L ++ + D A+D E + ++ + L+QI+T +++D KL
Sbjct: 22 PTIWVQNDDDLYALIDEIDASDVVALDTEFIKRTTYYPILALIQINTGNAIYLIDAPKL- 80
Query: 189 VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT--GQASRVLKLERNSL 246
+ + + + + PT G D I +L L N+FD G A KL+
Sbjct: 81 -DLTEFWQALAEVPTMVWYACGEDLGIFYLLAKCPP-LTNIFDVQIGVAYLSGKLQAGYS 138
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
+ L+ G+ +K ++W RPL E YA D YLL +Y++++ +L+
Sbjct: 139 Q-ALNEMLGIEIDKGESQSNWLARPLSYEQETYAANDVRYLLKLYEVVRTELA------- 190
Query: 307 NSDTPLTEVYKRSYDVCRQLYE-----KELLSENSYLHIYGLQGAGLNAQQLAVVAGLCE 361
+ L V + S R+L+ E+L + IY N +QL V+ L
Sbjct: 191 -ARGILNCVLEDSNHYARELHTIQNQPDEMLYLDLLAPIY-------NRRQLGVLQQLTI 242
Query: 362 WRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
WR+ +ARA +E +++ + L EI + +P + L R ++ + + RY ++ II
Sbjct: 243 WREALARATNEPRSFIISKQALREIVQDMPDSIKLLARTTINR-AVLRRYGNEIVRII 299
>gi|359452611|ref|ZP_09241954.1| ribonuclease D [Pseudoalteromonas sp. BSi20495]
gi|358050322|dbj|GAA78203.1| ribonuclease D [Pseudoalteromonas sp. BSi20495]
Length = 376
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 126/276 (45%), Gaps = 22/276 (7%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++L+E L ++K+ A+D E + R+ L+Q+ ++D L
Sbjct: 3 YQLIETQNQLNTFVEQIKNKPILAIDTEFMRRRTLYPEVALIQVFDGEHLALIDPL---A 59
Query: 190 QVGPY-LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 248
++ + ++ KDPT KV+H DI Q+ G +FDT A ++L E N + +
Sbjct: 60 ELSLFDFWQILKDPTVLKVLHSPSEDIEVFQKYAGFVPAPLFDTQFALQLLG-EGNCMGF 118
Query: 249 --LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM--KIKLSSMPKE 304
++ G+ +K +W RPL + L YA DT +LL + ++ +IK + +
Sbjct: 119 ALMVKELLGIEIDKSESRTNWLQRPLTTKQLDYAAADTFHLLPCFKLIIERIKAADLFDI 178
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
N + KR++ +L K++ +N++ L +LAV+ L WR
Sbjct: 179 VINESELIAN--KRAFQTPDELLYKDI--KNAW---------QLKPHELAVLKELAVWRR 225
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
A + + +VL + EIAK+ P++ LR++
Sbjct: 226 NKAIRKNLALNFVLKEHNMTEIAKRGPSSLNALRQI 261
>gi|296113063|ref|YP_003627001.1| ribonuclease D [Moraxella catarrhalis RH4]
gi|416235897|ref|ZP_11630366.1| ribonuclease D [Moraxella catarrhalis 12P80B1]
gi|295920757|gb|ADG61108.1| ribonuclease D [Moraxella catarrhalis BBH18]
gi|326563584|gb|EGE13838.1| ribonuclease D [Moraxella catarrhalis 12P80B1]
Length = 407
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 135/298 (45%), Gaps = 27/298 (9%)
Query: 129 PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLR 188
P V+ DL L ++ + D A+D E + ++ + L+QI+T +++D KL
Sbjct: 22 PTIWVQNDDDLYALIDEIDASDVVALDTEFIKRTTYYPILALIQINTGNAIYLIDAPKL- 80
Query: 189 VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT--GQASRVLKLERNSL 246
+ + + + + PT G D I +L L N+FD G A KL+
Sbjct: 81 -DLTEFWQALAEVPTMVWYACGEDLGIFYLLAKCPP-LTNIFDVQIGVAYLSGKLQAGYS 138
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
+ L+ G+ +K ++W RPL E YA D YLL +Y++++ +L+
Sbjct: 139 Q-ALNEMLGIEIDKGESQSNWLARPLSYEQETYAANDVRYLLKLYEVVRTELA------- 190
Query: 307 NSDTPLTEVYKRSYDVCRQLYE-----KELLSENSYLHIYGLQGAGLNAQQLAVVAGLCE 361
+ L V + S R+L+ E+L + IY N +QL V+ L
Sbjct: 191 -ARGILNCVLEDSNHYARELHTIQNQPDEMLYLDLLAPIY-------NRRQLGVLQQLTI 242
Query: 362 WRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
WR+ +ARA +E +++ + L EI + +P + L R ++ + + RY ++ II
Sbjct: 243 WREALARATNEPRSFIISKQALREIVQDMPDSIKLLARTTINR-AVLRRYGNEIVRII 299
>gi|383765490|ref|YP_005444471.1| putative ribonuclease [Phycisphaera mikurensis NBRC 102666]
gi|381385758|dbj|BAM02574.1| putative ribonuclease [Phycisphaera mikurensis NBRC 102666]
Length = 375
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 126/298 (42%), Gaps = 26/298 (8%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
LV +L +L A L+ FA D E ++F + CL+Q++T ++D L V +
Sbjct: 8 LVTTDGELLDLVATLREAGAFAFDTEFIGEQNFFPIFCLLQVATIQTATLIDPLA-GVDL 66
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLER-NSLEYLL 250
P L E+ DP + ++H +D+ ++R G ++DT A+ L+ SL L
Sbjct: 67 LP-LWELIADPAVETLVHAGLQDLEPVERLTGRPPAAIYDTQIAAGFAGLDYPCSLRKLT 125
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
+ +++ DWR RPL + YA D YL + E D
Sbjct: 126 DALTDADLGADHKFTDWRKRPLTGDKREYAANDVRYLALL--------------RERID- 170
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLH--IYG---LQGA-GLNAQQLAVVAGLCEWRD 364
EV KR + + L + +++ + G QG G++ + AV+ L WR
Sbjct: 171 --EEVAKRGHTAKVPEENRRLCAPGAFVSDPLSGRLKAQGTRGMSRRTRAVLDALLHWRQ 228
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422
A +D L ++ L+++A P AA LR E Y + ++ K++
Sbjct: 229 AEAIRNDVPVRMFLADQVLVDLALHPPADAAALRGFKGVPRPVKEHYAAEIPAVCKDA 286
>gi|295689658|ref|YP_003593351.1| ribonuclease D [Caulobacter segnis ATCC 21756]
gi|295431561|gb|ADG10733.1| ribonuclease D [Caulobacter segnis ATCC 21756]
Length = 389
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 116/265 (43%), Gaps = 19/265 (7%)
Query: 153 AVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGAD 212
AVD E + ++ CL+Q+++ T + V+D L + + P L V +D KV H A
Sbjct: 24 AVDTEFMRETTYWPKLCLIQVASPTHEAVIDPLADDIDLEPLL-AVMRDERILKVFHAAR 82
Query: 213 RDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRP 271
+D+ + + +FDT A E+ + + L+ + +K + DW RP
Sbjct: 83 QDVE-IFNNLKAMPKPLFDTQVAGMAAGFGEQIAYDALVRQMLRIELDKSSRFTDWARRP 141
Query: 272 LPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES--ENSDTPLTEVYKRSYDVCRQLYEK 329
L + L YA D +L ++ I++ +L + + + E T +++ +YDV + +
Sbjct: 142 LTEAQLTYALADVTHLAALFPILRERLETSGRLAWVEEEMTAISD--PAAYDVDPEKAWR 199
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
L + A+ LAV + WR+ A+ D+ G +L + + E+A Q
Sbjct: 200 RLRPRKT------------QAKYLAVFKAVAAWRERTAQNRDQPRGRILKDEAIDELATQ 247
Query: 390 LPTTAAKLRRLLKSKHSYIERYMGP 414
PT+ L L + GP
Sbjct: 248 APTSLEALNNLRGVPKGFGGSKFGP 272
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,157,129,246
Number of Sequences: 23463169
Number of extensions: 584515665
Number of successful extensions: 1385535
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 2149
Number of HSP's that attempted gapping in prelim test: 1378696
Number of HSP's gapped (non-prelim): 5169
length of query: 821
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 670
effective length of database: 8,816,256,848
effective search space: 5906892088160
effective search space used: 5906892088160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 81 (35.8 bits)