BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003416
(821 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SAF|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
pdb|3SAF|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
pdb|3SAG|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
pdb|3SAG|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
Length = 428
Score = 293 bits (750), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 142/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAV+LEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 105 IEETPCHFISSLDELVELNEKLLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTEDFIIDT 164
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 165 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 223
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++ M +
Sbjct: 224 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE---MWER 280
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 281 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 340
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 341 KTARREDESYGYVLPNHMMLKIAEELP 367
>pdb|3SAH|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
pdb|3SAH|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
Length = 428
Score = 291 bits (745), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 142/267 (53%), Positives = 187/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 105 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 164
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 165 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 223
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML AR+DTHYLLYIYD M+++ M +
Sbjct: 224 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSAARDDTHYLLYIYDKMRLE---MWER 280
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 281 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 340
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 341 KTARREDESYGYVLPNHMMLKIAEELP 367
>pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain
pdb|2HBK|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn
pdb|2HBL|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn, Zn, And Amp
pdb|2HBM|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn, Zn, And Ump
Length = 410
Score = 202 bits (514), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 172/309 (55%), Gaps = 23/309 (7%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
V+ +L+ + LK+ E AVDLEH+ YRS+ G+ CLMQISTR D++VDTLKLR +
Sbjct: 90 VDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLH 149
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT AS+ + L R+SL YLL +
Sbjct: 150 -ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLEN 208
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD------IMKIKLSSMPKESE 306
F +K+YQ ADWR+RPL M AR DTH+LL IYD I KL+ + ES
Sbjct: 209 FANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNKLAGVLYESR 268
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI-------YGLQGAGLNAQQLAVVAGL 359
N V KR ++ + Y S Y I + + ++ +V L
Sbjct: 269 N-------VAKRRFEYSK--YRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVREL 319
Query: 360 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
+WRD+IAR DDES +V+PN+ L + PT + L ++ + + ++I
Sbjct: 320 YQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLI 379
Query: 420 KNSMQNAAN 428
+++++N N
Sbjct: 380 RDALRNIKN 388
>pdb|3CYM|A Chain A, Crystal Structure Of Protein Bad_0989 From Bifidobacterium
Adolescentis
Length = 440
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 43/243 (17%)
Query: 214 DIVWLQRD----------FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 263
D VW+ D G+ +FDT A+R+L L+R L + HF G+ KE+
Sbjct: 93 DAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLGLKRFGLAAVTEHFLGLTLAKEHS 152
Query: 264 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL---SSMPKESENSDTPLTEVYKRSY 320
ADW RPLP + YA D L+ + M+ +L M E D L E
Sbjct: 153 AADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGP-- 210
Query: 321 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 380
KE L ++H+ + + Q LA+V L RD +AR D + +L +
Sbjct: 211 -------RKEHLI--PWMHVSHITEVMRDRQALAIVRALWTRRDELAREYDIAPTLLLSD 261
Query: 381 RTLIEIAKQLPTTAAKLRRL-----------------LKSKHSYIERYMGPVLSIIKNSM 423
++IE+AK+ P AA+ R + + +++ I+R + P S+ KN +
Sbjct: 262 SSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRKIKP--SMWKNII 319
Query: 424 QNA 426
Q+A
Sbjct: 320 QDA 322
>pdb|2CPR|A Chain A, Solution Structure Of The Hrdc Domain Of Human Exosome
Component 10
Length = 124
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 329 KELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 388
K + ++ SYL +Y Q LN QQL L WRD AR +DES GYVLPN +++IA+
Sbjct: 8 KPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAE 67
Query: 389 QLP 391
+LP
Sbjct: 68 ELP 70
>pdb|1YT3|A Chain A, Crystal Structure Of Escherichia Coli Rnase D, An
Exoribonuclease Involved In Structured Rna Processing
Length = 375
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 116/275 (42%), Gaps = 20/275 (7%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ L L +++ A+D E + R++ L+Q+ ++D L +
Sbjct: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-T 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG-QASRVLKLERNSLEY 248
P L+ + +DP+ K +H D+ FG + DT A+ +
Sbjct: 62 DWSP-LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
++ + GV +K DW RPL + YA D YLL I + + E+E S
Sbjct: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMV-------ETEAS 173
Query: 309 DTPLTEVYKRSYDVCR--QLYEKELLS-ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
+ D CR Q+ +E+++ E+++ I L +QLA + L +WR
Sbjct: 174 GW-----LPAALDECRLMQMRRQEVVAPEDAWRDITN--AWQLRTRQLACLQLLADWRLR 226
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
AR D + +V+ L +A+ +P + +L L
Sbjct: 227 KARERDLAVNFVVREEHLWSVARYMPGSLGELDSL 261
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 318 RSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG-- 375
R+YD+ L +L + Y H+ + G +A QLA ++ + A D+ TG
Sbjct: 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIV 140
Query: 376 YVLPNRTLIE--IAKQLPTTAAKLRRLLK 402
Y TL + +Q+ T+ K RL+K
Sbjct: 141 YFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 318 RSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG-- 375
R+YD+ L +L + Y H+ + G +A QLA ++ + A D+ TG
Sbjct: 72 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIV 131
Query: 376 YVLPNRTLIE--IAKQLPTTAAKLRRLLK 402
Y TL + +Q+ T+ K RL+K
Sbjct: 132 YFTDVSTLYDDRGVQQIMDTSDKTGRLIK 160
>pdb|2G7U|A Chain A, 2.3 A Structure Of Putative Catechol Degradative Operon
Regulator From Rhodococcus Sp. Rha1
pdb|2G7U|B Chain B, 2.3 A Structure Of Putative Catechol Degradative Operon
Regulator From Rhodococcus Sp. Rha1
pdb|2G7U|C Chain C, 2.3 A Structure Of Putative Catechol Degradative Operon
Regulator From Rhodococcus Sp. Rha1
pdb|2G7U|D Chain D, 2.3 A Structure Of Putative Catechol Degradative Operon
Regulator From Rhodococcus Sp. Rha1
Length = 257
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 52/215 (24%), Positives = 83/215 (38%), Gaps = 34/215 (15%)
Query: 379 PNRTLIEIAKQLPTTAAKLRRLLKS--KHSYIERYMG------PVLSIIKNSMQNAANFE 430
PN TL E+A + + +RR+L + K Y+ G VLSI ++ ++ A E
Sbjct: 28 PNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQHYSESHALIE 87
Query: 431 VIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMP--------- 481
+L E E E + VLD + + V + ++ VGT +P
Sbjct: 88 AAXPRLLEV-AEKTQESASLGVLDGADVVYAARVPVRRIXSINVSVGTRVPAYATSXGRA 146
Query: 482 -----------HPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHIST 530
A + ++ P+ + AEL+R L G A+ SE E IS
Sbjct: 147 LLAWAPADVVERVVAESTFQKLGPETIGTAAELERE-LAKVREQGFALTSEELEKGLISL 205
Query: 531 LS----SSGQSRDLNACKSPSPRVTEAAVQALKKP 561
+ + G + AC + S R T A + P
Sbjct: 206 AAPVHDAGGTVVGVVACSTSSARNTPAQFREQAVP 240
>pdb|1K42|A Chain A, The Solution Structure Of The Cbm4-2 Carbohydrate Binding
Module From A Thermostable Rhodothermus Marinus
Xylanase.
pdb|1K45|A Chain A, The Solution Structure Of The Cbm4-2 Carbohydrate Binding
Module From A Thermostable Rhodothermus Marinus Xylanase
Length = 168
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 467 ESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIA 519
E V+G D VG+++ +PP + L+ G+ V + NG+G+ EA A
Sbjct: 23 EGVEGWDLNVGSSVTNPPVFEVLETSDAPEGNKVLAVTVNGVGNNPWDIEATA 75
>pdb|3JXS|A Chain A, Crystal Structure Of Xg34, An Evolved Xyloglucan Binding
Cbm
pdb|3JXS|B Chain B, Crystal Structure Of Xg34, An Evolved Xyloglucan Binding
Cbm
pdb|3JXS|C Chain C, Crystal Structure Of Xg34, An Evolved Xyloglucan Binding
Cbm
Length = 174
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 467 ESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGS 510
E V+G D VG+++ +PP + L+ G+ V + NG+G+
Sbjct: 23 EGVEGWDLNVGSSVTNPPVFEVLETSDAPEGNKVLAVTVNGVGN 66
>pdb|2Y64|A Chain A, Xylopentaose Binding Mutated (X-2 L110f) Cbm4-2
Carbohydrate Binding Module From A Thermostable
Rhodothermus Marinus Xylanase
pdb|2Y6G|A Chain A, Cellopentaose Binding Mutated (X-2 L110f) Cbm4-2
Carbohydrate Binding Module From A Thermostable
Rhodothermus Marinus Xylanase
pdb|2Y6H|A Chain A, X-2 L110f Cbm4-2 Carbohydrate Binding Module From A
Thermostable Rhodothermus Marinus Xylanase
Length = 167
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 467 ESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGS 510
E V+G D VG+++ +PP + L+ G+ V + NG+G+
Sbjct: 23 EGVEGWDLNVGSSVTNPPVFEVLETSDAPEGNKVLAVTVNGVGN 66
>pdb|2Y6J|A Chain A, X-2 Engineered Mutated Cbm4-2 Carbohydrate Binding Module
From A Thermostable Rhodothermus Marinus Xylanase
pdb|2Y6K|A Chain A, Xylotetraose Bound To X-2 Engineered Mutated Cbm4-2
Carbohydrate Binding Module From A Thermostable
Rhodothermus Marinus Xylanase
pdb|2Y6L|A Chain A, Xylopentaose Binding X-2 Engineered Mutated Cbm4-2
Carbohydrate Binding Module From A Thermostable
Rhodothermus Marinus Xylanase
Length = 167
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 467 ESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGS 510
E V+G D VG+++ +PP + L+ G+ V + NG+G+
Sbjct: 23 EGVEGWDLNVGSSVTNPPVFEVLETSDAPEGNKVLAVTVNGVGN 66
>pdb|2E6L|A Chain A, Structure Of Mouse Wrn Exonuclease Domain
pdb|2E6M|A Chain A, Structure Of Mouse Werner Exonuclease Domain
Length = 208
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 195 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD-TGQASRVLKL-ERNSLEYLLHH 252
L+ + ++ + KK G + D L RDF + L + + T A+ LK E SL L+ H
Sbjct: 88 LKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETWSLNGLVKH 147
Query: 253 FCG--VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 291
G + +K + ++W PL ++ YA D + L IY
Sbjct: 148 VLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIY 188
>pdb|1F0K|A Chain A, The 1.9 Angstrom Crystal Structure Of E. Coli Murg
pdb|1F0K|B Chain B, The 1.9 Angstrom Crystal Structure Of E. Coli Murg
pdb|1NLM|A Chain A, Crystal Structure Of Murg:glcnac Complex
pdb|1NLM|B Chain B, Crystal Structure Of Murg:glcnac Complex
Length = 364
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 92/247 (37%), Gaps = 50/247 (20%)
Query: 334 ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES---------TGYVLPNRTLI 384
E ++ I GL+G G+ A A + WR ARA ++ GYV L
Sbjct: 57 EIDFIRISGLRGKGIKALIAAPLRIFNAWRQ--ARAIMKAYKPDVVLGMGGYVSGPGGLA 114
Query: 385 EIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA------ANFEVIAQKLKE 438
+ +P + + + ++ + V+ + NA +V+A L +
Sbjct: 115 AWSLGIPVVLHEQNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGNPVRTDVLALPLPQ 174
Query: 439 ERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGS 498
+R+ VLV+ S +I N TMP Q K+G
Sbjct: 175 QRLAGREGPVRVLVVGGSQGARILN--------------QTMP---------QVAAKLGD 211
Query: 499 SVAELDRNGLGS-------FAHPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVT 551
SV ++G GS +A G+ ++K I ++++ D+ C+S + V+
Sbjct: 212 SVTIWHQSGKGSQQSVEQAYAEAGQ---PQHKVTEFIDDMAAAYAWADVVVCRSGALTVS 268
Query: 552 EAAVQAL 558
E A L
Sbjct: 269 EIAAAGL 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,440,211
Number of Sequences: 62578
Number of extensions: 982163
Number of successful extensions: 1820
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1794
Number of HSP's gapped (non-prelim): 29
length of query: 821
length of database: 14,973,337
effective HSP length: 107
effective length of query: 714
effective length of database: 8,277,491
effective search space: 5910128574
effective search space used: 5910128574
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)