BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003416
(821 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P56960|EXOSX_MOUSE Exosome component 10 OS=Mus musculus GN=Exosc10 PE=1 SV=2
Length = 887
Score = 303 bits (775), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 188/265 (70%), Gaps = 4/265 (1%)
Query: 127 QTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLK 186
+TP LV + +L EL KL EFAVDLEH+ YRSFLGLTCLMQISTRTEDF+VDTL+
Sbjct: 285 ETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLE 344
Query: 187 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 246
LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+SL
Sbjct: 345 LRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSL 403
Query: 247 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE 306
++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++L +
Sbjct: 404 DHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELW---ERGN 460
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 366
+ L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L WRD
Sbjct: 461 HQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDKT 520
Query: 367 ARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 521 ARREDESYGYVLPNHMMLKIAEELP 545
>sp|Q01780|EXOSX_HUMAN Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2
Length = 885
Score = 300 bits (767), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 188/267 (70%), Gaps = 4/267 (1%)
Query: 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDT 184
+E+TP + + +L EL KL + EFAVDLEH+ YRSFLGLTCLMQISTRTEDF++DT
Sbjct: 283 IEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDT 342
Query: 185 LKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN 244
L+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT QA+R+L L R+
Sbjct: 343 LELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRH 401
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 304
SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD M+++ M +
Sbjct: 402 SLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE---MWER 458
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD
Sbjct: 459 GNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRD 518
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLP 391
AR +DES GYVLPN +++IA++LP
Sbjct: 519 KTARREDESYGYVLPNHMMLKIAEELP 545
>sp|Q10146|RRP6_SCHPO Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp6 PE=3 SV=2
Length = 777
Score = 235 bits (599), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 147/405 (36%), Positives = 218/405 (53%), Gaps = 49/405 (12%)
Query: 54 EKSKVPF---HVPTITKPQEEYKIVVNNANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFV 110
+K K+P+ H +TKPQ +++ NN+ + VW K + + PL+ + +
Sbjct: 120 KKEKLPYKVIHAAHLTKPQLRFRVQPNNSRE---FVWSWKLTEKPHSLVPLEKIIAQVKL 176
Query: 111 DKDIGDV----------EAVKPP------------SLEQTPFKLVEEVKDLKELAAKLKS 148
D + + +V PP S+++T V L ++ +L++
Sbjct: 177 DPSLKNSLPHPYEPEIQNSVYPPWVSEMSNPIDTGSVDETEPIWVSTESQLSDMLKELQN 236
Query: 149 VDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVM 208
E AVDLEH+ YRSF G CLMQIS R +D++VDTL+LR ++ L VF +P KV
Sbjct: 237 SKEIAVDLEHHDYRSFRGFVCLMQISNREKDWIVDTLELREELEA-LNVVFTNPNIIKVF 295
Query: 209 HGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWR 268
HGA DI+WLQRDFG+Y+ N+FDT A++VL E + L +LL +C +A+K YQ ADWR
Sbjct: 296 HGATMDIIWLQRDFGLYVVNLFDTYYATKVLGFEGHGLAFLLQKYCDYDADKRYQMADWR 355
Query: 269 VRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE 328
+RPLP EML+YA+ DTHYLLYI+D ++ +L S K +E + + V+ S + + YE
Sbjct: 356 IRPLPREMLKYAQSDTHYLLYIWDHLRNELIS--KSAERKENLMQSVFNSSKQISLRKYE 413
Query: 329 KELLSENSYLHIYGLQGAG-------------LNAQQLAVVAGLCEWRDVIARADDESTG 375
E Y IYGL G + + L + L +WRD +AR +DES
Sbjct: 414 LE-----PYDPIYGLGTDGWRNVLTKFGSSKIIGREALMIYRALHDWRDSVARKEDESVR 468
Query: 376 YVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK 420
YVLPNR LI IA P AA + + K Y+ ++ +++
Sbjct: 469 YVLPNRLLIAIAASKPVEAADVFSISKQLTPIARMYVEDIVKVVQ 513
>sp|Q12149|RRP6_YEAST Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP6 PE=1 SV=1
Length = 733
Score = 210 bits (535), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 190/347 (54%), Gaps = 32/347 (9%)
Query: 133 VEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVG 192
V+ +L+ + LK+ E AVDLEH+ YRS+ G+ CLMQISTR D++VDTLKLR +
Sbjct: 216 VDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLH 275
Query: 193 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 252
L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT AS+ + L R+SL YLL +
Sbjct: 276 -ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLEN 334
Query: 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK------ESE 306
F +K+YQ ADWR+RPL M YAR DTH+LL IYD ++ KL K ES
Sbjct: 335 FANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESR 394
Query: 307 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI-------YGLQGAGLNAQQLAVVAGL 359
N V KR ++ + Y S Y I + + ++ +V L
Sbjct: 395 N-------VAKRRFEYSK--YRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVREL 445
Query: 360 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 419
+WRD+IAR DDES +V+PN+ L + PT + L ++ + + ++I
Sbjct: 446 YQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLI 505
Query: 420 KNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDTSSNLKIPNV 464
+++++N N EE + S ET+ ++L+T S +I +V
Sbjct: 506 RDALRNIKN-------TNEEATPIPSSETKADGILLETISVPQIRDV 545
>sp|A6V8R6|RND_PSEA7 Ribonuclease D OS=Pseudomonas aeruginosa (strain PA7) GN=rnd PE=3
SV=2
Length = 376
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 17/242 (7%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
A+D E + +F L+Q+ ++++D L +R GP+ E+ +DP KV+H
Sbjct: 30 LALDTEFMRVDTFYPAAGLVQVGDGRREWLIDPLLVR-DWGPF-AELLEDPRVVKVLHAC 87
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRV 269
D+ R G +FDT A+ L + +S+ Y L+ ++ K+ +DW
Sbjct: 88 SEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQ 146
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 329
RPL + +RYA +D +L +Y + +LS E L + + ++CR+ +
Sbjct: 147 RPLTEMQMRYAADDVQHLAQVYLALDARLSE-----EKRAWLLEDGAELVANLCRESDPR 201
Query: 330 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 389
E E G L QQLAV+ LC WR+ AR + +VL RTL +A+
Sbjct: 202 EAYREVKL-------GWRLRPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARL 254
Query: 390 LP 391
LP
Sbjct: 255 LP 256
>sp|Q6G329|RND_BARHE Ribonuclease D OS=Bartonella henselae (strain ATCC 49882 / Houston
1) GN=rnd PE=3 SV=1
Length = 406
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 123/272 (45%), Gaps = 14/272 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
KL+ + DL+ A L++ D +D E + +F CL+Q+++ ++D + +
Sbjct: 24 MKLITQTTDLEIALATLRNSDFVTIDTEFIRETTFWPQLCLIQLASPDTTVLIDPISQDI 83
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEY 248
+ P+ ++ + KV H A +DI + G+ +FDT A + + S +
Sbjct: 84 DLKPFF-DLMVNKKIVKVFHAARQDIETIYHLGGVIPSPLFDTQIAGSICGFGDSISYDQ 142
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
++ G +K + DW RPL ++ L YA D YL +Y ++K +L +
Sbjct: 143 IVQRCTGYQLDKSSRFTDWSFRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRTHWMD 202
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
D + ++YD + EN ++G ++LAV+ + WR+ AR
Sbjct: 203 DEIAVLLEPKTYD----------MPENEAWK--KVKGKIKKPRELAVLQKIAAWRERKAR 250
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
+ +++ + LIEIA Q P A L+RL
Sbjct: 251 QYNIPRRHIIKDECLIEIAIQQPKDEADLKRL 282
>sp|A7HYE5|RND_PARL1 Ribonuclease D OS=Parvibaculum lavamentivorans (strain DS-1 / DSM
13023 / NCIMB 13966) GN=rnd PE=3 SV=2
Length = 384
Score = 76.3 bits (186), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 119/267 (44%), Gaps = 28/267 (10%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L+ +L + VD E + +F + CL+Q++ +++ +VD L + + P+ +
Sbjct: 10 LRAACDRLSTAGFVTVDTEFMRDATFWPILCLIQLAGPSDELIVDPLAPDLDLAPFY-AL 68
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHFCGVN 257
K+ KV H A +DI + +FDT A+ V + E L+ G +
Sbjct: 69 MKNRNVVKVFHAARQDIEIFCHEGKAIPDPLFDTQVAAMVCGFGDSVGYETLVRKLAGGS 128
Query: 258 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYK 317
+K + DW RPL D+ L+YA D YL IY+++ +L+ K
Sbjct: 129 VDKSSRFTDWSRRPLSDKQLQYAMADVTYLRTIYEVLAKRLTHT---------------K 173
Query: 318 RSYDVCRQLYEKE------LLSENSYLHIYGLQGAGLNAQQ-LAVVAGLCEWRDVIARAD 370
R++ V ++ + + EN++ + A Q+ LAV+ + WR+ A+
Sbjct: 174 RAHWVAEEMAVLQDPETYAMRPENAWKRV----KARFRGQRGLAVLVEVAAWRERQAQER 229
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKL 397
D V+ + L EIA Q+P T + L
Sbjct: 230 DLPRSRVMKDDALAEIATQIPRTISDL 256
>sp|A9H9B7|RND_GLUDA Ribonuclease D OS=Gluconacetobacter diazotrophicus (strain ATCC
49037 / DSM 5601 / PAl5) GN=rnd PE=3 SV=1
Length = 393
Score = 73.2 bits (178), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 120/279 (43%), Gaps = 14/279 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ +DL + +L+ ++D E + R++ CL+Q++ + E VVDTL + +
Sbjct: 14 LITTTEDLTGVVERLRREPFVSIDTEFVRERTYWPELCLVQLAGQDEVVVVDTLAPGIDL 73
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P L + DP KV H A +D+ FG +FDT A+ V ++ + L+
Sbjct: 74 AP-LGVLLDDPEVVKVFHAARQDLEIFLYLFGHLPAALFDTQVAAMVAGFGDQVGYDNLV 132
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G + +K ++ +DW RPL + + YA D +L +Y ++ +L E E
Sbjct: 133 ASLTGAHIDKAHRFSDWSARPLSEAQIAYAAADVTHLRTVYQLLLERL-----EREGRLD 187
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
+ D + E L E ++ N + L V+ + WR+ A+
Sbjct: 188 WVASDLAVLSDPATFRPDPETLWER-------MRPRTSNRRMLGVLRAITAWREREAQRV 240
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 409
+ +L + +L+EIA P L R+ + E
Sbjct: 241 NVPRQRLLKDESLLEIAATAPADVDALARIRGVSRGFAE 279
>sp|B8EN54|RND_METSB Ribonuclease D OS=Methylocella silvestris (strain BL2 / DSM 15510 /
NCIMB 13906) GN=rnd PE=3 SV=2
Length = 399
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 117/272 (43%), Gaps = 20/272 (7%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
L+ + L E+ +L S VD E + +F C++Q+++ E VD L +
Sbjct: 1 MSLITTTEALAEVCQRLASHAFVTVDTEFLRETTFWPKLCVVQLASADEAVAVDALASGL 60
Query: 190 QVGPYLREVFKDPTKKKVMHGA--DRDIVW-LQRDFGIYLCNMFDTGQASRVLKL-ERNS 245
+ P L E+ DP KV H A D +IVW L + I +FDT A+ V ++ S
Sbjct: 61 DLAP-LFELMADPAVVKVFHAARQDLEIVWNLAK---IIPAPLFDTQVAAMVCGFGDQVS 116
Query: 246 LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES 305
L+ C V+ +K + DW RPL + YA D YL IY I++ KL +
Sbjct: 117 YGDLVQTVCKVSLDKSSRFTDWSRRPLLPAQVDYAIADVTYLRDIYAILQDKLKETGRLG 176
Query: 306 ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
SD +Y E +N++ + + L V+ + WR+
Sbjct: 177 WLSDEMALLTSPATY---------EQHPDNAWER---FRNRVRKPRDLGVLMEVAGWREA 224
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
A+A D +L + LIE+A P +A L
Sbjct: 225 EAQARDVPRSRILKDDVLIELALAAPRSADAL 256
>sp|P44442|RND_HAEIN Ribonuclease D OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnd PE=3 SV=1
Length = 399
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 135/300 (45%), Gaps = 24/300 (8%)
Query: 103 NLSVLDFVDKDIGDV-EAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQY 161
N+ L F +K I + E PP F++V + L E+ + A+D E +
Sbjct: 7 NIPFLFFSNKKITMIKECQNPPH-----FRVVTDNTALLEVCNLAQQKSAVALDTEFMRV 61
Query: 162 RSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRD 221
++ L+Q+ ++D L + P++ + +P K++H D++ ++
Sbjct: 62 STYFPKLGLIQLYDGEHVSLIDPLAI-TDFSPFV-ALLANPKVLKILHSCSEDLLVFLQE 119
Query: 222 FGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 280
F M DT +R L L ++ L L + V +K +W RPL D L+YA
Sbjct: 120 FDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNVEIDKGATRTNWIKRPLSDIQLQYA 179
Query: 281 REDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLTEVYKRSYDVCRQLYEKELLSENSY 337
D YLL +Y I++ +L+ P E ++ + L + +K L E++ SE +Y
Sbjct: 180 AGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAKTHK--------LQERD--SEKAY 229
Query: 338 LHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
L I LN +L+ + L +WR +A D + Y++ + L ++AK P +++
Sbjct: 230 LDIPN--AWKLNPLELSRLRVLAQWRQNVAIERDLALSYIVKSEHLWKVAKNNPRNTSEM 287
>sp|Q0BVP4|RND_GRABC Ribonuclease D OS=Granulibacter bethesdensis (strain ATCC BAA-1260
/ CGDNIH1) GN=rnd PE=3 SV=2
Length = 395
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 116/267 (43%), Gaps = 14/267 (5%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + +DL L L+ +D E + R++ C++Q+ V+DTL + +
Sbjct: 14 LITKSEDLAALCTTLRREPYVTIDTEFMRERTYWPELCVVQLGGADCVAVIDTLAPELDL 73
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P + E+ DP KV H +DI FG MFDT A+ V ++ + L+
Sbjct: 74 AP-VGELLADPAVIKVFHACRQDIEIFLLRFGSIPQPMFDTQVAAMVAGFGDQVGYDTLV 132
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
G + +K ++ +DW RPL + YA D +L +Y+ ++ +L E E
Sbjct: 133 SSLTGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRL-----EKEGRLA 187
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
++E D + + E L+ N + L ++ +C WR+V A+
Sbjct: 188 WVSEEMAVLNDPATYRTDPVTMWER-------LRPRTNNRRYLGLLRAICAWREVEAQRL 240
Query: 371 DESTGYVLPNRTLIEIAKQLPTTAAKL 397
+ ++ + +L+EIA P A L
Sbjct: 241 NIPRQRLIKDESLLEIAATSPADAESL 267
>sp|A5G127|RND_ACICJ Ribonuclease D OS=Acidiphilium cryptum (strain JF-5) GN=rnd PE=3
SV=1
Length = 392
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 118/276 (42%), Gaps = 26/276 (9%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+E + L L +L + VD E + +++ C++Q+ + V+D + +
Sbjct: 12 LIETTEALAALCDRLAAEPFVTVDTEFMREKTYFPELCVVQLGGANDVAVIDAQAEGLDL 71
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P L +F +P KV H +DI FG +FDT A+ V ++ + L+
Sbjct: 72 AP-LGALFANPAVTKVFHACRQDIEIFLLKFGAVPAPLFDTQVAAMVAGFGDQVGYDTLV 130
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS------MPKE 304
G +K ++ +DW RPL + YA D +L +Y+ ++ +L+ + +E
Sbjct: 131 SSLAGGRIDKAHRFSDWSARPLSRAQIAYAAADVTWLRPVYEGLRARLTREGRLDWVAEE 190
Query: 305 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 364
+ P T Y E E+++ L+ G N +QLA+V + WR+
Sbjct: 191 AAVLADPAT-------------YRTE--PEDAWRR---LKLRGGNRRQLALVKAIAAWRE 232
Query: 365 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
A + ++ + + E+A P A L R+
Sbjct: 233 REAMRVNVPRQRIVRDEQIPELAALAPADAEGLTRV 268
>sp|C6C608|RND_DICDC Ribonuclease D OS=Dickeya dadantii (strain Ech703) GN=rnd PE=3 SV=2
Length = 374
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 117/272 (43%), Gaps = 20/272 (7%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++L+ L E+ ++ + + + A+D E + R++ L+Q+ ++D L + V
Sbjct: 3 YQLITTDDGLSEVCSQARRMPQVALDTEFVRTRTYYPQLGLIQLFDGERLSLIDPLSITV 62
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL-KLERNSLEY 248
P+ ++ DP K +H D+ FG+ DT L K
Sbjct: 63 W-QPFC-DLLLDPAVTKYLHAGSEDLEVFLNAFGLLPTPFVDTQILVAFLGKPLSYGFAA 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ + V +K DW RPL ++ +YA D +YLL M I+L
Sbjct: 121 LVADYMQVTLDKSESRTDWLARPLSEKQCQYAAADVYYLL----PMAIRLV--------E 168
Query: 309 DTPLTEVYKRSYDVCRQLYEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
+T ++ + D CRQL +++ L E +Y I L + LA + L +WR
Sbjct: 169 ETTSAGWWEAALDECRQLCQRKQDVLAPEQAYREIGN--AWQLKGRHLACLQKLADWRLR 226
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKL 397
AR D + +++ L ++A+ LP + +L
Sbjct: 227 KARERDSAVNFIVREEHLGQVARYLPGSLGEL 258
>sp|Q1QLI8|RND_NITHX Ribonuclease D OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
GN=rnd PE=3 SV=2
Length = 382
Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 119/273 (43%), Gaps = 20/273 (7%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ +L + A+L + VD E + ++ L C++Q+++ E VVD L + +
Sbjct: 3 LITTTAELASVCARLANYPVVTVDTEFLRETTYYPLLCVVQMASPDEAVVVDALAEGIDL 62
Query: 192 GPYLREVFKDPTKKKVMHGADRD--IVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY- 248
P+ ++ + KV H A +D IVW Q GI +FDT A+ VL +S+ Y
Sbjct: 63 KPFF-DLMSNERVLKVFHAARQDIEIVWHQ--AGIIPHPIFDTQVAAMVLGYG-DSIAYD 118
Query: 249 -LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
L+ G +K ++ DW RPL + L YA D +L ++ + L +
Sbjct: 119 ALVERVNGHRPDKTHRFTDWSRRPLTKDQLEYAVADVTHLRDVFAALDADLKKRGRGDWV 178
Query: 308 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367
S+ ++YD + E E L+ + LAV+ + WR+ A
Sbjct: 179 SEEMEVLTSPKTYD-----FHPERAWER-------LKTRVRKPKDLAVMMEVAAWREQEA 226
Query: 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
++ + VL + + +IA P T +L L
Sbjct: 227 QSRNIPRSRVLKDDAVGDIAIHAPATPERLATL 259
>sp|Q28RA7|RND_JANSC Ribonuclease D OS=Jannaschia sp. (strain CCS1) GN=rnd PE=3 SV=1
Length = 386
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 111/259 (42%), Gaps = 25/259 (9%)
Query: 154 VDLEHNQYRSFLGLTCLMQIST----RTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMH 209
VD E + R++ CL+Q++ T+ ++D L + + P L E+F++ KV H
Sbjct: 26 VDTEFLRERTYFAQLCLVQVAMPGTDDTDAVLIDPLAEGLSLEP-LYELFRNVNVVKVFH 84
Query: 210 GADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWR 268
A +D+ + G+ +FDT A+ V ++ E L+ N +K + DW
Sbjct: 85 AARQDLEIFFVEGGLVPTPLFDTQVAAMVCGFGDQVGYETLVRRIAKANLDKSSRFTDWS 144
Query: 269 VRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES--ENSDTPLTEVYKRSYDVCRQL 326
RPL D YA D YL IY+ + +L+ + E LT D
Sbjct: 145 RRPLSDAQKVYALADVTYLREIYEYLSAELARTDRTHWLEEELAQLTNADAYVVD----- 199
Query: 327 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 386
EN++ + +G + +A+ L +R+ A+ + VL + L+E+
Sbjct: 200 ------PENAWKRLKLRSNSG---RVVAIAQQLAAFRETYAQEKNVPRNRVLKDDALLEL 250
Query: 387 AKQLPTTAAKL---RRLLK 402
A P T A L R LL+
Sbjct: 251 AGTKPKTVADLGKSRLLLR 269
>sp|Q6AJF4|RND_DESPS Ribonuclease D OS=Desulfotalea psychrophila (strain LSv54 / DSM
12343) GN=rnd PE=3 SV=1
Length = 374
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 119/269 (44%), Gaps = 26/269 (9%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTED-FVVDTLKLRVQ 190
++ +DLK++ K +D +D E R++ L+QI+ E+ + +D L ++
Sbjct: 6 IISTTEDLKKIVNKALKLDAVGLDTEFVWERTYYPQLGLIQIALSDEECYAIDPLSIK-D 64
Query: 191 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL-KLERNSLEYL 249
+ P L E+ D K++H A +D++ + + G N+FDT A+ + SL L
Sbjct: 65 LSP-LGELLADRNTIKILHDAPQDLIIMSQATGATPQNIFDTRLAAGFAGSISTISLLQL 123
Query: 250 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL-----LYIYDIMKIKLSSMPKE 304
+ +K +W RPL ++ L Y+ D YL + + I+ K+ S +E
Sbjct: 124 VSEQLETELDKSETRTNWLKRPLTEKQLSYSLNDVRYLRATRVILLSKIIGPKIKSWLQE 183
Query: 305 SENS-DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
N + P Y D E+ Y + G+ L+ + + V + WR
Sbjct: 184 ELNLLNNPAN--YSTIAD------------ESRYKKVKGVNK--LDRKSIGVAQEIATWR 227
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPT 392
+ AR + G+V+ + L+EIA PT
Sbjct: 228 EQKARELNRPRGHVIKDDILLEIAAIRPT 256
>sp|O67779|DPO1_AQUAE DNA polymerase I OS=Aquifex aeolicus (strain VF5) GN=polA PE=3 SV=1
Length = 574
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 5/135 (3%)
Query: 170 LMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 229
L+QI +V+D +++ + P LR++ + + V H D+ +L R +GI+
Sbjct: 38 LVQIGDEENTYVIDLYEIQ-DIEP-LRKLINE--RGIVGHNLKFDLKYLYR-YGIFPSAT 92
Query: 230 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 289
FDT AS +L ER+SL +++ + G + +K YQ +DW L D L+YA D L
Sbjct: 93 FDTMIASYLLGYERHSLNHIVSNLLGYSMDKSYQTSDWGASVLSDAQLKYAANDVIVLRE 152
Query: 290 IYDIMKIKLSSMPKE 304
++ M+ L+ + E
Sbjct: 153 LFPKMRDMLNELDAE 167
>sp|D4Z694|RND_SPHJU Ribonuclease D OS=Sphingobium japonicum (strain NBRC 101211 /
UT26S) GN=rnd PE=3 SV=2
Length = 388
Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 113/263 (42%), Gaps = 13/263 (4%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + K L + A++ AVD E + S+ CL+Q++ E +D + +
Sbjct: 6 LITDSKTLAQFCARIAKSPYIAVDTEFMRENSYWPDLCLVQVADEHEAAAIDPKAPGLDL 65
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P L + + KV H +D+ + G +FDT A+ L L E+ L+
Sbjct: 66 SPLLDLMVDNEDVLKVFHAGGQDLEIIYNLTGKTPHPLFDTQIAAMALGLGEQIGYGNLV 125
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
+ GV +K + DW RPL + YA D YL+ I+ M +L + + D
Sbjct: 126 DAWLGVQLDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIFPKMLEEL----RRTGRGDW 181
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
L + +R D YE + E ++ + + A A L + L WR++ A+
Sbjct: 182 -LDQEMERISDPSN--YENK--PEEAWQRV---RIASRKADVLGRLKALAAWREMEAQDK 233
Query: 371 DESTGYVLPNRTLIEIAKQLPTT 393
+ G ++ + TL +IA P T
Sbjct: 234 NLPRGRIVKDETLADIASHPPRT 256
>sp|P09155|RND_ECOLI Ribonuclease D OS=Escherichia coli (strain K12) GN=rnd PE=1 SV=1
Length = 375
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 116/275 (42%), Gaps = 20/275 (7%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++++ L L +++ A+D E + R++ L+Q+ ++D L +
Sbjct: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-T 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG-QASRVLKLERNSLEY 248
P L+ + +DP+ K +H D+ FG + DT A+ +
Sbjct: 62 DWSP-LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
++ + GV +K DW RPL + YA D YLL I + + E+E S
Sbjct: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMV-------ETEAS 173
Query: 309 DTPLTEVYKRSYDVCR--QLYEKELLS-ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 365
+ D CR Q+ +E+++ E+++ I L +QLA + L +WR
Sbjct: 174 GW-----LPAALDECRLMQMRRQEVVAPEDAWRDITN--AWQLRTRQLACLQLLADWRLR 226
Query: 366 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
AR D + +V+ L +A+ +P + +L L
Sbjct: 227 KARERDLAVNFVVREEHLWSVARYMPGSLGELDSL 261
>sp|Q5NPM2|RND_ZYMMO Ribonuclease D OS=Zymomonas mobilis subsp. mobilis (strain ATCC
31821 / ZM4 / CP4) GN=rnd PE=3 SV=1
Length = 390
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 108/261 (41%), Gaps = 13/261 (4%)
Query: 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQV 191
L+ + L L ++L D A+D E + S+ CL+QI+ E +D L + +
Sbjct: 6 LITDSATLAALCSRLSRADFIAIDTEFIRENSYWPELCLIQIADDKEAAAIDPLAPGLDM 65
Query: 192 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLL 250
P + + KV H +D+ + G +FDT A+ L + E+ L+
Sbjct: 66 TPLTDLLVNNEDILKVFHAGGQDLEIILHHTGKMPFPLFDTQIAAMALGVGEQVGYSNLV 125
Query: 251 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 310
+ + +K + DW RPL L YA D +L ++ ++ +L +
Sbjct: 126 ERYLSIKLDKGARFTDWSHRPLDRRQLDYAIADVTHLATLFPMLLKEL-----RDKGRGA 180
Query: 311 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 370
L + +R D + + + E S+L I + A L + L WR++ A+
Sbjct: 181 WLDQEMERLADPSQYIND----PEKSWLRI---RMPNRKADILGRLKALAAWREIEAQNR 233
Query: 371 DESTGYVLPNRTLIEIAKQLP 391
+ G + + TL ++A P
Sbjct: 234 NIPRGRIAKDETLADLAIHPP 254
>sp|A8GFH0|RND_SERP5 Ribonuclease D OS=Serratia proteamaculans (strain 568) GN=rnd PE=3
SV=2
Length = 373
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 115/272 (42%), Gaps = 14/272 (5%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
++L+ L+++ + K + A+D E + R++ L+Q+ + ++D L ++
Sbjct: 3 YQLITTDAGLQQVCDQAKKHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPIK- 61
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG-QASRVLKLERNSLEY 248
Q P++ E+ + K +H D+ F M DT A+ +
Sbjct: 62 QWQPFI-ELLSNTQVVKFLHAGSEDLEVFLNAFKTLPTPMVDTQILAAFTGRPMSCGFAT 120
Query: 249 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 308
L+ + V +K DW RPL ++ YA D YLL + + + + S
Sbjct: 121 LVAEYMEVELDKSEARTDWLARPLTEKQCVYAAADVFYLLPMAKRLVQETEEAGWTAAAS 180
Query: 309 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 368
+ L +RS + +L +E+ N++ L +QL + L EWR AR
Sbjct: 181 NECLLLCQRRSETLAPELAYREI--TNAW---------QLRPRQLGCLQKLAEWRLRQAR 229
Query: 369 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
D + +V+ L ++A+ +PT+ +L L
Sbjct: 230 ERDLAVNFVVREENLWQVARHMPTSLGELDSL 261
>sp|C9XUE4|RND_CROTZ Ribonuclease D OS=Cronobacter turicensis (strain DSM 18703 / LMG
23827 / z3032) GN=rnd PE=3 SV=2
Length = 369
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 107/263 (40%), Gaps = 20/263 (7%)
Query: 139 LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV 198
L L ++ A+D E + R++ L+Q+ ++D L + + P+ + +
Sbjct: 8 LAALCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLTI-TEWAPF-QAL 65
Query: 199 FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG-QASRVLKLERNSLEYLLHHFCGVN 257
+D K +H D+ Q FG+ DT AS V L+ H GV
Sbjct: 66 LQDQNITKFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFVGHPLSCGFATLVEHHTGVA 125
Query: 258 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYK 317
+K DW RPL + YA D YLL I KL +E+ + E
Sbjct: 126 LDKSESRTDWLARPLTERQCDYAAADVWYLLPIAH----KLMEQVREAGWLTAAINE--- 178
Query: 318 RSYDVCRQLYEK--ELLS-ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 374
CR + ++ E+L + ++ I L +QLA + L WR AR D +
Sbjct: 179 -----CRLMTQRRGEVLDPDEAWREITN--AWQLRPRQLACLKLLAGWRLRKARERDMAV 231
Query: 375 GYVLPNRTLIEIAKQLPTTAAKL 397
+V+ L ++A+ +P + +L
Sbjct: 232 NFVVREENLWKVARHMPGSLGEL 254
>sp|Q5GZ75|RND_XANOR Ribonuclease D OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 /
KXO85) GN=rnd PE=3 SV=2
Length = 363
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 5/150 (3%)
Query: 152 FAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA 211
+D E + R++ L+Q++ E ++D L + L+E KVMH A
Sbjct: 23 IGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMNAA--LKEWLTATDIVKVMHSA 80
Query: 212 DRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRV 269
D+V + G+ +FDT Q + L + Y L+ G K +DW
Sbjct: 81 SEDLVTFKCACGVLPRPLFDT-QIAAALAGVGGGMGYQKLVQEVTGTLLTKGETRSDWMR 139
Query: 270 RPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299
RPL L YA +D YL I+D + +L+
Sbjct: 140 RPLSPSQLEYAADDVRYLFAIHDELTRRLT 169
>sp|A0KXU5|RND_SHESA Ribonuclease D OS=Shewanella sp. (strain ANA-3) GN=rnd PE=3 SV=1
Length = 388
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 120/293 (40%), Gaps = 32/293 (10%)
Query: 119 AVKPPSLEQ--TPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTR 176
+ P LE+ + F+ V + L L A+ + +D E + R++ L+Q
Sbjct: 10 VLNPQELEKNLSVFQYVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLIQAYDG 69
Query: 177 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIY----LCNMFDT 232
++D + L + + +P K++H D+ F Y +FD+
Sbjct: 70 KTLALIDPVALPDLSAFW--SLLDNPNIIKLVHSCSEDL----EVFAHYGQRQPTPLFDS 123
Query: 233 GQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 290
A+ + + + L Y L+ G +K DW RPL + L YA D YL +
Sbjct: 124 QIAASLCGMG-HGLGYAKLVETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQL 182
Query: 291 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS---ENSYLHIYGLQGAG 347
Y + KL + + L +Y+ ++ E L + + +YL +
Sbjct: 183 YPQLADKLKAQDR--------LGWLYEEG----ERMTEGRLATPDMDTAYLRVKN--AFQ 228
Query: 348 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 400
L QLA + L +WR A A D + G+V+ + LI +AK+ P + L +L
Sbjct: 229 LTEHQLAYLKVLAKWRLEKALARDLALGFVIKDHGLIALAKKQPKSMGDLLKL 281
>sp|A1SVE6|RND_PSYIN Ribonuclease D OS=Psychromonas ingrahamii (strain 37) GN=rnd PE=3
SV=1
Length = 369
Score = 41.2 bits (95), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 114/270 (42%), Gaps = 27/270 (10%)
Query: 130 FKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRV 189
F+++ L + A L ++D E + R++ L+QIS T+ ++D +
Sbjct: 3 FEIITTTAQLHDFIATLDG-SPISLDTEFVRTRTYAANLGLLQISQNTQITLIDP----I 57
Query: 190 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY- 248
VG K ++H + D+ ++ G +FDT A L + SL Y
Sbjct: 58 AVGDLSSFWQAIDNKNIILHASSEDLEIIRDHKGDLNFTLFDTQIACSFLNMGA-SLGYA 116
Query: 249 -LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 307
++ V +K DW RPL ++ + YA D YL + L + ++ EN
Sbjct: 117 KMVETLEAVIVDKGESRTDWCARPLSEKQINYAGVDVLYL-------QPCLEKLQQQLEN 169
Query: 308 SDT-PLTEVYKRSYDVCRQLYEKELLSEN---SYLHIYGLQGAGLNAQQLAVVAGLCEWR 363
P E C+ + ++++ ++ +Y + L L+ Q LA++ L +WR
Sbjct: 170 KKMFPFFE------QECQSVLAQKMVKQDPDKAYKLLNNL--FKLDRQGLAIIKALAKWR 221
Query: 364 DVIARADDESTGYVLPNRTLIEIAKQLPTT 393
+ A+ + + +V+ L +A PT+
Sbjct: 222 LLTAQERNLALNFVVKADHLWLLAYYQPTS 251
>sp|O94615|PPR8_SCHPO Pentatricopeptide repeat-containing protein 8, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ppr8 PE=4 SV=1
Length = 481
Score = 40.4 bits (93), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 106 VLDFVDKDIGDVEAVKPP-SLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSF 164
+ F++K + DV+ KP S T F + +KD+K L+A +D++ + H YRS
Sbjct: 349 ITTFINK-MSDVKEFKPSISTANTLFSIASRLKDVKWLSAGFDMIDKYGLKPTHVTYRSL 407
Query: 165 LGLTCLM 171
L CL+
Sbjct: 408 LKAYCLL 414
>sp|Q2JB35|LIPB_FRASC Octanoyltransferase OS=Frankia sp. (strain CcI3) GN=lipB PE=3 SV=1
Length = 221
Score = 39.3 bits (90), Expect = 0.13, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 466 RESVDGVDALVGTTMPHPPAYTQLKQEPPK------VGSSVAELDRNGLGSFAHPGEAIA 519
RE +DGV + HPP YT K+ PP+ +G V E +R GL ++ PG+ +
Sbjct: 9 RERIDGVRPDTLWFLSHPPVYTVGKRTPPEHRPLAGLGIPVHETNRGGLLTYHAPGQLVG 68
>sp|Q8CDF7|EXD1_MOUSE Exonuclease 3'-5' domain-containing protein 1 OS=Mus musculus
GN=Exd1 PE=2 SV=1
Length = 570
Score = 36.2 bits (82), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 31/147 (21%)
Query: 166 GLTCLMQISTRTEDFVVDTLKLRVQV-GPYLREVFKDPTKKKVMHGADRDIVWLQ----R 220
G C +Q++T + ++ D L + L+ + +D KV+H D WL
Sbjct: 171 GKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMILEDKRILKVIH----DCRWLSDCLSH 226
Query: 221 DFGIYLCNMFDTGQASRVLKLERNS-----------LEYLLHH---------FCGVNANK 260
+GI L N+FDT Q + VL+ + E L+ H F +
Sbjct: 227 QYGIMLNNVFDT-QVADVLQFSMETGGFLPNCISTLQESLIRHLKVAPRYLFFLEERQKR 285
Query: 261 EYQNAD-WRVRPLPDEMLRYAREDTHY 286
+N + W RPLP +L+ +T Y
Sbjct: 286 IQENPEIWLTRPLPPSLLKILALETTY 312
>sp|Q179T2|MUT7_AEDAE Probable exonuclease mut-7 homolog OS=Aedes aegypti GN=AAEL005527
PE=3 SV=1
Length = 719
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 245 SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 301
+L L+ G +K Q ++W RPL E LRYA D LL IYD ++ +L+ +
Sbjct: 575 NLANLVRLCLGKKLDKSNQFSNWAQRPLRKEQLRYAALDAFCLLEIYDAIEKQLTHI 631
>sp|P74933|DPO1_TREPA DNA polymerase I OS=Treponema pallidum (strain Nichols) GN=polA
PE=3 SV=2
Length = 997
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 11/138 (7%)
Query: 195 LREVFKDPTKKKVMHGADRDIVWLQRDFGIY---LCNMFDTGQASRVLKLERNS--LEYL 249
LR ++ D T VMH D + R G++ CN+FDT A+ +L +R + ++ L
Sbjct: 478 LRRLWNDETLTLVMHNGKFDYHVMHRA-GVFEHCACNIFDTMVAAWLLDPDRGTYGMDVL 536
Query: 250 LHHFCGVNA--NKEYQNADWRVRPLPDEM-LRYAREDTHYLLYIYDIMKIKLSSMPKES- 305
F + +E +P E +RYA ED +Y +K++L + S
Sbjct: 537 AASFFQIRTITFEEVVAKGQTFAHVPYECAVRYAAEDADITFRLYHYLKLRLETAGLLSV 596
Query: 306 -ENSDTPLTEVYKRSYDV 322
E + PL + R +V
Sbjct: 597 FETIEMPLLPILARMEEV 614
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 316,531,540
Number of Sequences: 539616
Number of extensions: 14248330
Number of successful extensions: 34752
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 34526
Number of HSP's gapped (non-prelim): 275
length of query: 821
length of database: 191,569,459
effective HSP length: 126
effective length of query: 695
effective length of database: 123,577,843
effective search space: 85886600885
effective search space used: 85886600885
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)