Query 003416
Match_columns 821
No_of_seqs 492 out of 1973
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 00:27:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3saf_A Exosome component 10; e 100.0 6.6E-65 2.3E-69 567.1 34.8 369 64-436 1-412 (428)
2 2hbj_A Exosome complex exonucl 100.0 9.7E-61 3.3E-65 531.2 32.0 352 64-426 2-386 (410)
3 1yt3_A Ribonuclease D, RNAse D 100.0 1.5E-53 5E-58 467.3 34.7 349 129-494 2-374 (375)
4 3cym_A Uncharacterized protein 100.0 2.4E-49 8.2E-54 443.4 24.4 354 121-493 10-435 (440)
5 2e6m_A Werner syndrome ATP-dep 99.9 1.5E-26 5.1E-31 232.7 16.2 173 129-302 16-199 (208)
6 1vk0_A Hypothetical protein; h 99.9 1.5E-26 5.2E-31 235.7 13.5 164 131-296 22-205 (206)
7 2kfn_A Klenow fragment of DNA 99.8 2.7E-17 9.3E-22 190.8 23.2 173 126-300 3-195 (605)
8 3pv8_A DNA polymerase I; DNA p 99.7 1.2E-16 4.1E-21 185.0 15.8 168 125-302 12-185 (592)
9 1wud_A ATP-dependent DNA helic 99.5 2.5E-14 8.5E-19 127.7 7.0 76 350-425 10-85 (89)
10 1x9m_A DNA polymerase; DNA plo 99.5 4.7E-14 1.6E-18 166.3 9.0 148 151-302 1-187 (698)
11 2rhf_A DNA helicase RECQ; HRDC 99.4 1.4E-13 4.8E-18 119.4 8.3 72 352-423 4-75 (77)
12 2kv2_A Bloom syndrome protein; 99.4 7.1E-13 2.4E-17 117.2 8.8 74 350-423 4-77 (85)
13 2rrd_A BLM HRDC domain, HRDC d 99.4 8E-13 2.7E-17 120.8 9.2 73 350-422 19-91 (101)
14 4dfk_A DNA polymerase I, therm 99.3 3.5E-12 1.2E-16 146.5 12.9 118 150-298 11-128 (540)
15 2e1f_A Werner syndrome ATP-dep 99.3 3E-12 1E-16 117.4 8.4 72 351-423 13-84 (103)
16 2dgz_A Werner syndrome protein 99.3 3.4E-12 1.2E-16 119.0 8.5 73 351-424 20-92 (113)
17 3v9w_A Ribonuclease T; DEDD nu 98.3 3.8E-06 1.3E-10 85.7 11.4 156 132-303 20-226 (235)
18 1bgx_T TAQ DNA polymerase; DNA 98.2 2.9E-06 1E-10 102.1 10.3 117 149-299 304-421 (832)
19 2f96_A Ribonuclease T; RNAse, 97.1 0.0047 1.6E-07 62.5 13.5 85 203-303 126-218 (224)
20 2p1j_A POLIII, DNA polymerase 96.9 0.0055 1.9E-07 60.3 11.1 134 147-299 10-177 (186)
21 3mxm_B Three prime repair exon 96.8 0.006 2.1E-07 63.0 11.1 91 193-299 106-216 (242)
22 1wlj_A Interferon stimulated g 96.6 0.02 7E-07 56.4 12.9 136 149-302 5-173 (189)
23 1y97_A Three prime repair exon 96.4 0.035 1.2E-06 56.3 13.3 91 193-299 101-211 (238)
24 3u3y_B Three prime repair exon 96.2 0.032 1.1E-06 60.3 12.4 90 194-299 107-216 (314)
25 2gui_A DNA polymerase III epsi 95.9 0.13 4.3E-06 50.5 14.2 85 194-295 88-182 (194)
26 1d8b_A SGS1 RECQ helicase; fiv 94.9 0.089 3.1E-06 46.2 8.1 67 355-421 8-76 (81)
27 2qxf_A Exodeoxyribonuclease I; 94.4 0.3 1E-05 55.5 13.2 134 146-296 6-199 (482)
28 1zbh_A 3'-5' exonuclease ERI1; 92.7 0.96 3.3E-05 47.9 12.8 89 194-298 159-263 (299)
29 1w0h_A 3'-5' exonuclease ERI1; 91.1 1.6 5.6E-05 42.7 11.6 88 195-298 92-195 (204)
30 1qht_A Protein (DNA polymerase 78.9 18 0.0006 43.4 14.1 146 148-296 134-328 (775)
31 2igi_A Oligoribonuclease; RNAs 77.4 13 0.00045 35.5 10.3 81 194-299 87-178 (180)
32 2xri_A ERI1 exoribonuclease 3; 76.9 12 0.00042 37.5 10.3 84 194-296 110-212 (224)
33 3cg7_A CRN-4, cell death-relat 76.2 6.3 0.00022 41.9 8.3 85 195-297 102-208 (308)
34 1zbu_A ERI-1 homolog, 3'-5' ex 72.6 11 0.00036 41.1 9.1 89 194-298 209-313 (349)
35 2gbz_A Oligoribonuclease; ORN, 64.3 40 0.0014 32.9 10.5 83 195-299 92-182 (194)
36 3ikm_A DNA polymerase subunit 62.7 5.4 0.00019 49.3 4.6 97 204-301 195-350 (1172)
37 3cym_A Uncharacterized protein 61.1 20 0.00067 40.1 8.5 72 350-421 360-434 (440)
38 2rhf_A DNA helicase RECQ; HRDC 44.6 3.5 0.00012 35.0 -0.8 57 430-489 5-70 (77)
39 2py5_A DNA polymerase; protein 39.8 2E+02 0.0069 33.1 12.6 132 149-294 6-180 (575)
40 1s5j_A DNA polymerase I; repli 38.8 2.1E+02 0.0072 34.6 13.1 99 190-292 259-387 (847)
41 4gmj_B CCR4-NOT transcription 36.5 63 0.0022 34.3 7.1 85 200-300 147-247 (285)
42 2a1r_A Poly(A)-specific ribonu 31.6 63 0.0021 36.0 6.4 99 197-300 275-399 (430)
43 3d45_A Poly(A)-specific ribonu 29.2 65 0.0022 36.7 6.2 100 197-299 270-393 (507)
44 2d5r_A CCR4-NOT transcription 27.8 1E+02 0.0035 32.1 6.8 85 199-299 136-236 (252)
45 1go3_F DNA-directed RNA polyme 26.6 51 0.0017 30.0 3.8 42 378-421 64-105 (107)
46 2kv2_A Bloom syndrome protein; 25.8 12 0.00043 32.3 -0.4 58 431-491 8-74 (85)
47 1noy_A Protein (DNA polymerase 22.3 71 0.0024 34.8 4.7 64 229-294 267-335 (388)
48 1yt3_A Ribonuclease D, RNAse D 22.0 52 0.0018 35.6 3.4 41 350-390 301-341 (375)
49 2rrd_A BLM HRDC domain, HRDC d 21.3 18 0.00061 32.6 -0.3 58 431-491 23-89 (101)
50 2e1f_A Werner syndrome ATP-dep 21.1 28 0.00094 31.5 0.9 44 430-474 15-61 (103)
No 1
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=100.00 E-value=6.6e-65 Score=567.10 Aligned_cols=369 Identities=43% Similarity=0.726 Sum_probs=334.9
Q ss_pred CCCCcccccCCCCCCCCCCCcccccccc----------------------C--------------------CCCCCCCCC
Q 003416 64 TITKPQEEYKIVVNNANQPFQHVWLQKS----------------------E--------------------DSGRFIHPL 101 (821)
Q Consensus 64 ~i~kPQ~~F~~~vdNs~~pf~~~~~~~~----------------------~--------------------~~~~~~hPy 101 (821)
.|.|||+.|+++||||++||+|++.+|+ + +...|.|||
T Consensus 1 ~i~~pq~~f~~~~dn~~~p~~p~~~~kp~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hpy 80 (428)
T 3saf_A 1 SIIRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPY 80 (428)
T ss_dssp CCCCGGGGCSSCCCCSSSCCCCCCCCCTTCSSCCCGGGSGGGC-----------------------------CCSSSCTT
T ss_pred CCCCchhccCCCCCCCCCCCCCccCCCCcccCCHHHHhhhhhhcccccCcccccccchhhhccccccccccCCCCCCCCh
Confidence 5899999999999999999999875442 1 123588999
Q ss_pred Cc-cccccccccccCCCCCCCCCCCCCCCcEEecCHHHHHHHHHHHhcCCeeEEEeeecccccCCCcEEEEEEEeCCceE
Q 003416 102 DN-LSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDF 180 (821)
Q Consensus 102 e~-~~~~~~~~~~~~~~~p~~~~~l~~t~~~lIdT~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~LcLIQISt~~~~y 180 (821)
++ |..++|+++++...+|+++.+++.++|.+|+|.++|..+|+.+.....||||+|+++.++|++.+|+|||++.+.+|
T Consensus 81 ~~ei~~~~~~~~~~~~~~~~~~~p~~~~~y~~I~t~e~L~~~l~~L~~~~~vavDtE~~~~~~~~~~l~lIQLa~~~~~~ 160 (428)
T 3saf_A 81 QYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTEDF 160 (428)
T ss_dssp HHHHHTCCCCHHHHSCCCCCCCCCGGGSCEEEECSHHHHHHHHHHHTTCSEEEEEEEEECTTCSSCEEEEEEEECSSCEE
T ss_pred HHHHhcCCCCHHHhCcCCCCCCCCCCCCCcEEECCHHHHHHHHHHHhcCCeEEEEEEecCCCCCCCeEEEEEEEeCCcEE
Confidence 96 88999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcchhhhHHHHHhhcCCCceEEEecchhcHHHHHHHhCCCcCccchhHHHHHhhCCCCCcHHHHHHHHcCCCCcc
Q 003416 181 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 260 (821)
Q Consensus 181 LID~Lal~~~L~~~L~eLLeDp~IvKV~H~aK~DL~~L~rd~GI~~~nlFDTqLAAyLLg~~~~SLa~LvekyLgv~LdK 260 (821)
+||++.++..+ ..|+++|+|++|.||+|++++|+.+|++.+|+.+.++||||+|+|+|+++++||+.|+++|||+.++|
T Consensus 161 lidpl~l~~~l-~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~~~~gL~~Lv~~~Lg~~l~K 239 (428)
T 3saf_A 161 IIDTLELRSDM-YILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNK 239 (428)
T ss_dssp EEETTTTGGGG-GGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTCSCCSHHHHHHHHHCCCCCC
T ss_pred EEEeccchhhH-HHHHHHHcCCCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCCCCCCHHHHHHHHcCCCCCc
Confidence 99999875344 46899999999999999999999999889999999999999999999998899999999999999999
Q ss_pred ccccccccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHhhccCChhhHHHH
Q 003416 261 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 340 (821)
Q Consensus 261 ~~Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eLee~G~~~~~~~~~l~ev~~rs~e~~l~~yek~~~~e~~~~~i 340 (821)
+.+.+||..|||+++|+.||+.||+|+++||+.|..+|.+.|+. ..+|+..++.++..+|++.|+++...+..|.++
T Consensus 240 ~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (428)
T 3saf_A 240 QYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNG---QPVQLQVVWQRSRDICLKKFIKPIFTDESYLEL 316 (428)
T ss_dssp TTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTS---CSHHHHHHHHHHHHHTTCCCCCCCCCTTGGGHH
T ss_pred cccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---cccHHHHHHHHHHHHHHHhhcCCCCCcccHHHH
Confidence 99999999999999999999999999999999999999987631 235899999999999988887766667778777
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhHHHHHHHHH
Q 003416 341 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK 420 (821)
Q Consensus 341 ~~l~~~~l~~~qlavlraL~aWRD~iAR~~Dep~~~VL~D~~LleLA~~~P~t~~eL~~l~g~~~~~vrr~g~eIL~iI~ 420 (821)
.+...+.++++|+++|++|++||+++||++|+|+++||+|++|++||+.+|+|..+|.+|+|++...+++||++|+++|+
T Consensus 317 ~~~~~~~l~~~~l~l~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~L~~i~g~~~~~~r~~g~~~l~~I~ 396 (428)
T 3saf_A 317 YRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQ 396 (428)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCSSHHHHHTTCSSCCHHHHHTHHHHHHHHH
T ss_pred HHHhccCCChHHHHHHHHHHHHHHHHHHHcCCCcCEEECHHHHHHHHHHCCCCHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 54334589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhcccchHHHHHHH
Q 003416 421 NSMQNAANFEVIAQKL 436 (821)
Q Consensus 421 ~a~~~~~~~~al~elL 436 (821)
++.+.+.....+...+
T Consensus 397 ~a~~~p~~~~~~~~~~ 412 (428)
T 3saf_A 397 QAREMPLLKSEVAAGV 412 (428)
T ss_dssp HHHTSCCCHHHHCC--
T ss_pred HHHhCCCcCcchhhhh
Confidence 9999998876654443
No 2
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=100.00 E-value=9.7e-61 Score=531.21 Aligned_cols=352 Identities=35% Similarity=0.604 Sum_probs=312.5
Q ss_pred CCCCcccccCCCCCCCC-CCCcccccccc-----------------CCCCCCCCCCCc-cccccccccccCCCCCCCCCC
Q 003416 64 TITKPQEEYKIVVNNAN-QPFQHVWLQKS-----------------EDSGRFIHPLDN-LSVLDFVDKDIGDVEAVKPPS 124 (821)
Q Consensus 64 ~i~kPQ~~F~~~vdNs~-~pf~~~~~~~~-----------------~~~~~~~hPye~-~~~~~~~~~~~~~~~p~~~~~ 124 (821)
+|+|||+.|+++||||+ +||+|++.+|+ ++..++.|||++ |..+.|+++++...+|+++.+
T Consensus 2 ~~~~pq~~f~~~~dn~~~~~f~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~hpy~~ei~~~~~~~~~~~~~~~~~~~~ 81 (410)
T 2hbj_A 2 MVEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSKS 81 (410)
T ss_dssp CCCCGGGGCSSCCCCCCCSSCCCCCCCCTTCSSCHHHHSSCCCCCSSSCSCCCCTTHHHHHHSCCCGGGSSCCCCCCCCC
T ss_pred CCCCchhhcCCCCCCCCCCCCccccccCCcccCCHHHHhccCcccccCCccCCCCcHHHHhhCCCCHHHhccCCCCCCCC
Confidence 79999999999999997 79999876554 234568999996 788899999999999999999
Q ss_pred CCCCCcEEecCHHHHHHHHHHHhcCCeeEEEeeecccccCCCcEEEEEEEeCCceEEEecCCcchhhhHHHHHhhcCCCc
Q 003416 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTK 204 (821)
Q Consensus 125 l~~t~~~lIdT~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~LcLIQISt~~~~yLID~Lal~~~L~~~L~eLLeDp~I 204 (821)
++.+.+.+|++.++|..+++.|.....|+||+|++++++|.+.+|+|||++.+.+||||++.+...+ ..|+++|+|++|
T Consensus 82 ~~~~~~~~I~t~~~L~~~~~~L~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~ylid~l~l~~~l-~~L~~lL~d~~i 160 (410)
T 2hbj_A 82 WDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENL-HILNEVFTNPSI 160 (410)
T ss_dssp GGGCCCEEECSHHHHHHHHHHHTTCSEEEEEEEEECSSSSSCEEEEEEEECSSCEEEEETTTTTTTG-GGGHHHHTCTTS
T ss_pred cCCCCcEEeCCHHHHHHHHHHHhhCCceEEEeeecCCcCCCCcEEEEEEEECCcEEEEechhhhhhH-HHHHHHHcCCCc
Confidence 9999999999999999999999888899999999998889999999999998889999986653223 468999999999
Q ss_pred eEEEecchhcHHHHHHHhCCCcCccchhHHHHHhhCCCCCcHHHHHHHHcCCCCccccccccccCCCCCHHHHHHHHHhh
Q 003416 205 KKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 284 (821)
Q Consensus 205 vKV~H~aK~DL~~L~rd~GI~~~nlFDTqLAAyLLg~~~~SLa~LvekyLgv~LdK~~Q~SDW~~RPLs~eql~YAA~DA 284 (821)
.||+|++++|+.+|++++|+.+.++|||++|+|+|+++++||++|+++|||+.++|+.+.+||..|||+++|+.||+.||
T Consensus 161 ~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~~~~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL~~~q~~YAa~Da 240 (410)
T 2hbj_A 161 VKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADT 240 (410)
T ss_dssp EEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCSCCSHHHHHHHHSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHH
T ss_pred eEEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHhCCCccCHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHH
Confidence 99999999999999888999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHhh--------------ccCChhhHHHHhcccCCCCCH
Q 003416 285 HYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK--------------ELLSENSYLHIYGLQGAGLNA 350 (821)
Q Consensus 285 ~yLL~Lyd~L~~eLee~G~~~~~~~~~l~ev~~rs~e~~l~~yek--------------~~~~e~~~~~i~~l~~~~l~~ 350 (821)
++++.||+.|..+|.+.| ...|+.+ .+..+|.+.|+. ...++..|.++.+. +.+++
T Consensus 241 ~~ll~L~~~L~~~L~~~g-----~~~~~~~---e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~ 310 (410)
T 2hbj_A 241 HFLLNIYDQLRNKLIESN-----KLAGVLY---ESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKILMYQ--YNIPP 310 (410)
T ss_dssp HTHHHHHHHHHHHHHHTT-----CHHHHHH---HHHHHHHCEECCGGGCCSSCCSSEECCCCSSSSSSSCSSC--SCCCS
T ss_pred HHHHHHHHHHHHHHHhcC-----chHhHHH---HHHHHHHHHhhhccccccccccccccCCchhHHHHHHhhh--cCCCH
Confidence 999999999999999865 3356554 455667765532 11234557777653 56888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhHHHHHHHHHHhHhcc
Q 003416 351 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 426 (821)
Q Consensus 351 ~qlavlraL~aWRD~iAR~~Dep~~~VL~D~~LleLA~~~P~t~~eL~~l~g~~~~~vrr~g~eIL~iI~~a~~~~ 426 (821)
+++++|++|++||+++||++|+|+++||+|++|++||+.+|+|.++|.+++|++...+++||++|+++|+++++.+
T Consensus 311 ~~~~l~~~L~~wR~~~Ar~~d~p~~~V~~D~~L~~iA~~~P~~~~~L~~i~g~~~~~~~~~g~~~l~~I~~~~~~~ 386 (410)
T 2hbj_A 311 EREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRNI 386 (410)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCCSHHHHHTCTTCCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcEEECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996644
No 3
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=100.00 E-value=1.5e-53 Score=467.31 Aligned_cols=349 Identities=19% Similarity=0.266 Sum_probs=306.6
Q ss_pred CcEEecCHHHHHHHHHHHhcCCeeEEEeeecccccCCCcEEEEEEEeCCceEEEecCCcchhhhHHHHHhhcCCCceEEE
Q 003416 129 PFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVM 208 (821)
Q Consensus 129 ~~~lIdT~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~LcLIQISt~~~~yLID~Lal~~~L~~~L~eLLeDp~IvKV~ 208 (821)
+|.+|++.+++..+++.+.....|+||+|+.+.++|.+.+|+|||++++.+|+||+..+. .+ ..|+++|+|++|.||+
T Consensus 2 ~~~~I~t~~~l~~~~~~l~~~~~va~D~E~~~~~~~~~~l~liqla~~~~~~lid~~~l~-~~-~~L~~ll~d~~i~Kv~ 79 (375)
T 1yt3_A 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DW-SPLKAILRDPSITKFL 79 (375)
T ss_dssp CCEEECSHHHHHHHHHHHTTSSEEEEEEEEECCSCSSCEEEEEEEECSSCEEEECGGGCS-CC-HHHHHHHHCTTSEEEE
T ss_pred CeEEeCCHHHHHHHHHHHcCCCeEEEEeeecCCCcCCCceEEEEEecCCcEEEEeCCCCC-Ch-HHHHHHHcCCCceEEE
Confidence 578899999999999999888899999999999899999999999998889999976542 23 5689999999999999
Q ss_pred ecchhcHHHHHHHhCCCcCccchhHHHHHhhCCC-CCcHHHHHHHHcCCCCccccccccccCCCCCHHHHHHHHHhhHHH
Q 003416 209 HGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL 287 (821)
Q Consensus 209 H~aK~DL~~L~rd~GI~~~nlFDTqLAAyLLg~~-~~SLa~LvekyLgv~LdK~~Q~SDW~~RPLs~eql~YAA~DA~yL 287 (821)
|++++|+.+|++++|+.+.++|||++|+|+|+++ ++||+.|+++|||+.++|+.+.+||..|||+++|+.||+.||+++
T Consensus 80 h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l 159 (375)
T 1yt3_A 80 HAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYL 159 (375)
T ss_dssp SSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTH
T ss_pred eeHHHHHHHHHHHcCCCCCcEEEcHHHHHHcCCCCChhHHHHHHHHcCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999888999999999999999999997 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHhhccCChhhHHHHhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 003416 288 LYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 367 (821)
Q Consensus 288 L~Lyd~L~~eLee~G~~~~~~~~~l~ev~~rs~e~~l~~yek~~~~e~~~~~i~~l~~~~l~~~qlavlraL~aWRD~iA 367 (821)
+.||+.|..+|.+.| ...|+.+. +...+...+. ...++..|.++++. +.++++++++|++|++||+++|
T Consensus 160 ~~L~~~L~~~L~~~g-----~~~l~~~e---~E~pl~~~~~-~~~~~~~~~~~~~~--~~l~~~~~~~~~~L~~wR~~~A 228 (375)
T 1yt3_A 160 LPITAKLMVETEASG-----WLPAALDE---CRLMQMRRQE-VVAPEDAWRDITNA--WQLRTRQLACLQLLADWRLRKA 228 (375)
T ss_dssp HHHHHHHHHHHHHTT-----CHHHHHHH---HHHHHHHHHC-CCCGGGGGGGSTTG--GGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-----cHHHHHHH---HHHHHhhccc-CCCchHHHHhccCc--ccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999865 23453332 2333333332 23456678888663 5689999999999999999999
Q ss_pred HHcCCCCccccCHHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhHHHHHHHHHHhHhcccch--------------HHHH
Q 003416 368 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANF--------------EVIA 433 (821)
Q Consensus 368 R~~Dep~~~VL~D~~LleLA~~~P~t~~eL~~l~g~~~~~vrr~g~eIL~iI~~a~~~~~~~--------------~al~ 433 (821)
|++|+|+++||+|++|++||+.+|+|.++|.++ |++...+++||+.|+++|+++++.+++. .++.
T Consensus 229 ~~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~i-g~~~~~~~~~g~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 307 (375)
T 1yt3_A 229 RERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAF 307 (375)
T ss_dssp HHHTCCGGGTSCHHHHHHHHHHCCCSHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHSCGGGSCCCCCCGGGSTTHHHHH
T ss_pred HHhCCCcceEECHHHHHHHHHHCCCCHHHHHhc-CCChHHHHHHHHHHHHHHHHHHhCCHhhCCCCCCCCCCChhHHHHH
Confidence 999999999999999999999999999999999 9999999999999999999998876543 3556
Q ss_pred HHH---HHHHHhhhcccchhhccCchhhccccCC-----CCCCCcc-ccccccccCCCcchhhhccCCCC
Q 003416 434 QKL---KEERMEVASEETEVLVLDTSSNLKIPNV-----GRESVDG-VDALVGTTMPHPPAYTQLKQEPP 494 (821)
Q Consensus 434 elL---lk~~~e~~~va~~~lia~~~dl~~ia~~-----~~~~v~a-l~gwr~~~fg~~~~a~~l~~g~~ 494 (821)
+.| ++.+|+++||+ +.+|++.++|++|+.+ +..++|. |.|||+++|| +..++++.|.+
T Consensus 308 ~~l~~~~~~~a~~~~~~-~~~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~Wr~~~~~--~~l~~~l~~~~ 374 (375)
T 1yt3_A 308 KAIKSLITDVSETHKIS-AELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMA--EALHNLLQEYP 374 (375)
T ss_dssp HHHHHHHHHHHHHHTCC-HHHHCCHHHHHHHHHHHTTCSCCSSCCGGGSHHHHHHHH--HHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhCCC-HHHcCCHHHHHHHHhhcccCCCcchhhhhhcchHHHHHH--HHHHHHHhcCC
Confidence 665 89999999999 9999999999999964 3566776 9999999999 99999998864
No 4
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=100.00 E-value=2.4e-49 Score=443.44 Aligned_cols=354 Identities=19% Similarity=0.250 Sum_probs=296.9
Q ss_pred CCCCCCCCCcEEecCHHHHHHHHHHHhcC-CeeEEEeeecccccCCCcEEEEEEEeCCc-eEEEecCCcc---hhhhHHH
Q 003416 121 KPPSLEQTPFKLVEEVKDLKELAAKLKSV-DEFAVDLEHNQYRSFLGLTCLMQISTRTE-DFVVDTLKLR---VQVGPYL 195 (821)
Q Consensus 121 ~~~~l~~t~~~lIdT~e~L~~lle~L~~a-~~IAVDtE~~~~rty~g~LcLIQISt~~~-~yLID~Lal~---~~L~~~L 195 (821)
.+.|++.++ .+|++.++|.++++.|... ..|+||+|+.+.++|++.+|+|||++.+. +|+||++.+. .++ ..|
T Consensus 10 l~~p~~~~~-~~I~t~e~L~~~~~~L~~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~~~lid~l~~~~~~~~l-~~L 87 (440)
T 3cym_A 10 LAEPREGVP-NVIDTLPAFRDYCSELASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADW-NDF 87 (440)
T ss_dssp CCSCTTCCC-CEECSHHHHHHHHHHHHSCEEEEEEEEEECTTTSSSCCEEEEEEEEETTEEEEECHHHHHHTTCCH-HHH
T ss_pred CCCCCCCCC-EeeCCHHHHHHHHHHHHhcCCeEEEEeeecCCCCCCCCEEEEEEEECCCcEEEEEcCCccccccCH-HHH
Confidence 456666666 6899999999999998877 88999999999888999999999998654 8999985432 123 468
Q ss_pred HHhhcCCCceEEEecchhcHHHHHHHhCCCcCccchhHHHHHhhCCCCCcHHHHHHHHcCCCCccccccccccCCCCCHH
Q 003416 196 REVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDE 275 (821)
Q Consensus 196 ~eLLeDp~IvKV~H~aK~DL~~L~rd~GI~~~nlFDTqLAAyLLg~~~~SLa~LvekyLgv~LdK~~Q~SDW~~RPLs~e 275 (821)
+++|+|+ .||+|++++|+.+|+ ++|+.+.++|||++|+|+|+++++||+.|+++|||..++|+.+++||..|||+++
T Consensus 88 ~~lL~d~--~KV~h~~k~Dl~~L~-~~gi~~~~~fDt~lAa~lL~~~~~gL~~L~~~~lg~~~~K~~~~sdw~~rpLs~~ 164 (440)
T 3cym_A 88 NRAVGDA--VWILHDSLQDLPGFD-ELGMEPQRLFDTEIAARLLGLKRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRD 164 (440)
T ss_dssp HHHHTTC--EEEESSHHHHHHHHH-HHTCCCCEEEEHHHHHHHTTCSSCSHHHHHHHHHCEECCCCCTTCCTTCSSCCHH
T ss_pred HHHHCCC--CEEEEcCHHHHHHHH-HcCCcCCceehHHHHHHHhCCCCCCHHHHHHHHhCCCcccccccCCCcCCCCCHH
Confidence 9999997 699999999999995 8999999999999999999998899999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHhhccCChhhHHHHhcccCCCC--CHHHH
Q 003416 276 MLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL--NAQQL 353 (821)
Q Consensus 276 ql~YAA~DA~yLL~Lyd~L~~eLee~G~~~~~~~~~l~ev~~rs~e~~l~~yek~~~~e~~~~~i~~l~~~~l--~~~ql 353 (821)
|+.||+.||++++.||+.|..+|.+.| ...|+.+.|. .+|...+.+.......|.++++. +.+ +++|+
T Consensus 165 q~~YAa~Da~~Ll~L~~~L~~~L~~~g-----~~~l~~~e~~---~l~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~l 234 (440)
T 3cym_A 165 WRNYAALDVELLIELETKMRAELKRQG-----KMEWAQEEFD---YALKEGLGPRKEHLIPWMHVSHI--TEVMRDRQAL 234 (440)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHT-----CHHHHHHHHH---HHHHHHSSSCCCCSSGGGCCTTG--GGGTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-----cHHHHHHHHH---HHhccccccCCCchHHHHHhccc--cccCCCHHHH
Confidence 999999999999999999999999875 3456655543 34444433233444567655442 234 89999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHhCCCCHHHHHhhhcCChhHH------------------HH-hHHH
Q 003416 354 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI------------------ER-YMGP 414 (821)
Q Consensus 354 avlraL~aWRD~iAR~~Dep~~~VL~D~~LleLA~~~P~t~~eL~~l~g~~~~~v------------------rr-~g~e 414 (821)
++|++|++||+++||++|+|++|||+|.+|++||+.+|+|.++|.++++++...+ ++ |++.
T Consensus 235 ~~~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 314 (440)
T 3cym_A 235 AIVRALWTRRDELAREYDIAPTLLLSDSSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRKIKPSM 314 (440)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHSCHHHHHHHHHHCCCSHHHHHTCSGGGSCCCCCCSSTHHHHHHTTHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCccEEECHHHHHHHHHHCCCCHHHHHhCCCCCchheecccchhhhhhcccchhhhhhhHHH
Confidence 9999999999999999999999999999999999999999999999988765555 87 9999
Q ss_pred HHHHHHHhHhcccch---------------------------------HHHHHHH---HHHHHhhhcccchhhccCchhh
Q 003416 415 VLSIIKNSMQNAANF---------------------------------EVIAQKL---KEERMEVASEETEVLVLDTSSN 458 (821)
Q Consensus 415 IL~iI~~a~~~~~~~---------------------------------~al~elL---lk~~~e~~~va~~~lia~~~dl 458 (821)
|+++|+++++.+++. .++.+.| ++.+|++.+|+ +.+|++.++|
T Consensus 315 ~l~~i~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~-~~~l~~~~~l 393 (440)
T 3cym_A 315 WKNIIQDALALPPSEWPDVDGGAARRHESQSASAPKSIRVWKERYPERLQVLNRVRKAVSQIAEDTRTP-VEIVIKPQYL 393 (440)
T ss_dssp HHHHHHHHHTSCGGGSCC--------------CCCSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTCC-HHHHSCHHHH
T ss_pred HHHHHHHHHhCCHhhCCCCcccccccCccccccCCCCcccccccChhHHHHHHHHHHHHHHHHHHcCCC-HHHcCCHHHH
Confidence 999999998765432 1334444 88899999999 9999999999
Q ss_pred ccccCCC----CCCCcc------ccccccccCCCcchhhhccCCC
Q 003416 459 LKIPNVG----RESVDG------VDALVGTTMPHPPAYTQLKQEP 493 (821)
Q Consensus 459 ~~ia~~~----~~~v~a------l~gwr~~~fg~~~~a~~l~~g~ 493 (821)
++|+ ++ ..+||. +.|||+++|| +.++...+|.
T Consensus 394 ~~l~-~~~~~~~~~~~~~l~~~g~~~Wr~~~~~--~~~~~~~~~~ 435 (440)
T 3cym_A 394 RNLC-WTDEPRKRDVARFLSEQGARDWQVSLVA--ESVSRAIEGH 435 (440)
T ss_dssp HHHH-CSSCGGGCCHHHHHHHHTCCHHHHHHHH--HHHHHHHHC-
T ss_pred HHHh-CcCCCChhhHhHHHhhccCCCchHHHHH--HHHHHHHhcc
Confidence 9999 64 566776 5899999999 8887777664
No 5
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.94 E-value=1.5e-26 Score=232.72 Aligned_cols=173 Identities=21% Similarity=0.255 Sum_probs=149.3
Q ss_pred CcEEecCHHHHH----HHHHHHhcCCeeEEEeeeccc--ccCCCcEEEEEEEeC-CceEEEecCCcchhhhHHHHHhhcC
Q 003416 129 PFKLVEEVKDLK----ELAAKLKSVDEFAVDLEHNQY--RSFLGLTCLMQISTR-TEDFVVDTLKLRVQVGPYLREVFKD 201 (821)
Q Consensus 129 ~~~lIdT~e~L~----~lle~L~~a~~IAVDtE~~~~--rty~g~LcLIQISt~-~~~yLID~Lal~~~L~~~L~eLLeD 201 (821)
.+.+|+|.+++. .++..|.....|++|+|+.+. +++.+.+|+|||++. +.+|+||+..+. .+.+.|+++|+|
T Consensus 16 ~i~~i~~~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~~~~~~~~~~iqla~~~~~~~~i~~~~~~-~~~~~L~~lL~d 94 (208)
T 2e6m_A 16 SIVYSYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMS-VFPQGLKMLLEN 94 (208)
T ss_dssp EEEEECSHHHHHHHHHHHHHHCCTTCEEEEEEECCC---CCSCCCCCEEEEECSSSEEEEECGGGCS-SCCHHHHHHHTC
T ss_pred cEEEEeCHHHHHHHHHHHHHHhccCCEEEEEeecCCCCCCCCCCCeEEEEEecCCCeEEEEECcccc-cchHHHHHHhcC
Confidence 578999999998 555667777889999999886 567889999999985 578999876543 234579999999
Q ss_pred CCceEEEecchhcHHHHHHHhCCCcCccch-hHHHHHhhCCC-CCcHHHHHHHHcCCCCcc--ccccccccCCCCCHHHH
Q 003416 202 PTKKKVMHGADRDIVWLQRDFGIYLCNMFD-TGQASRVLKLE-RNSLEYLLHHFCGVNANK--EYQNADWRVRPLPDEML 277 (821)
Q Consensus 202 p~IvKV~H~aK~DL~~L~rd~GI~~~nlFD-TqLAAyLLg~~-~~SLa~LvekyLgv~LdK--~~Q~SDW~~RPLs~eql 277 (821)
+.|.||+|+++.|+.+|++++|+.+.++|| |++|+|+|++. .+||+.|+++||+..+.| ..+++||..|||+++|+
T Consensus 95 ~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~ 174 (208)
T 2e6m_A 95 KSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQK 174 (208)
T ss_dssp TTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHH
T ss_pred CCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccCCCChhHHHHHHHHcCCCcCCCCCeeeCCCCCCCCCHHHH
Confidence 999999999999999998889999999999 99999999985 799999999999998844 56899999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhcCC
Q 003416 278 RYAREDTHYLLYIYDIMKIKLSSMP 302 (821)
Q Consensus 278 ~YAA~DA~yLL~Lyd~L~~eLee~G 302 (821)
.||+.||++++.||+.|..+|.+.+
T Consensus 175 ~YAa~Da~~~~~L~~~L~~~L~~~~ 199 (208)
T 2e6m_A 175 LYAATDAYAGLIIYQKLGNLGDTVQ 199 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHHHHHHHHhccchhh
Confidence 9999999999999999999998765
No 6
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.94 E-value=1.5e-26 Score=235.67 Aligned_cols=164 Identities=15% Similarity=0.134 Sum_probs=139.0
Q ss_pred EEecCHHHHHHHHHHH------hcCCeeEEEeeeccc------ccCC--CcEEEEEEEeCCceEEEecCC-cchhhhHHH
Q 003416 131 KLVEEVKDLKELAAKL------KSVDEFAVDLEHNQY------RSFL--GLTCLMQISTRTEDFVVDTLK-LRVQVGPYL 195 (821)
Q Consensus 131 ~lIdT~e~L~~lle~L------~~a~~IAVDtE~~~~------rty~--g~LcLIQISt~~~~yLID~La-l~~~L~~~L 195 (821)
.+|.+.+++..+|..+ .....||||+||.+. ++++ .++||||||+++.++||++.. +...+. .|
T Consensus 22 ~~v~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~~~l~~l~~~~~~~L~-~L 100 (206)
T 1vk0_A 22 IDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLK-DL 100 (206)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEECCSSCCGGGH-HH
T ss_pred EEEecHHHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCCeEEEeccccCCccHH-HH
Confidence 4566677777777766 556799999999853 3566 499999999999999999721 212232 37
Q ss_pred HHhhcCCCceEEEecchhcHHHHHHHhCCCcCccchhH-HHHHhhCCC---CCcHHHHHHHHcCCCC-ccccccccccCC
Q 003416 196 REVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG-QASRVLKLE---RNSLEYLLHHFCGVNA-NKEYQNADWRVR 270 (821)
Q Consensus 196 ~eLLeDp~IvKV~H~aK~DL~~L~rd~GI~~~nlFDTq-LAAyLLg~~---~~SLa~LvekyLgv~L-dK~~Q~SDW~~R 270 (821)
..+|+||+|+||+|++++|+..|++++|+.+.++|||+ +|+.++|.+ ++||+.|+++++|+.+ +|..+++||..
T Consensus 101 ~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~~~~SdW~~- 179 (206)
T 1vk0_A 101 YRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEK- 179 (206)
T ss_dssp HHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTGGG-
T ss_pred HHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCCCcccCCCCC-
Confidence 89999999999999999999999999999999999997 888888862 6999999999999999 55679999999
Q ss_pred CCCHHHHHHHHHhhHHHHHHHHHHHH
Q 003416 271 PLPDEMLRYAREDTHYLLYIYDIMKI 296 (821)
Q Consensus 271 PLs~eql~YAA~DA~yLL~Lyd~L~~ 296 (821)
||+++|+.||+.||+|++.||+.|..
T Consensus 180 pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 180 AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999864
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.76 E-value=2.7e-17 Score=190.80 Aligned_cols=173 Identities=21% Similarity=0.214 Sum_probs=145.7
Q ss_pred CCCCcEEecCHHHHHHHHHHHhcCCeeEEEeeecccccCCCcEEEEEEEe-CCceEEEecCC--------cc-hhhhHHH
Q 003416 126 EQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIST-RTEDFVVDTLK--------LR-VQVGPYL 195 (821)
Q Consensus 126 ~~t~~~lIdT~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~LcLIQISt-~~~~yLID~La--------l~-~~L~~~L 195 (821)
....|.+|++.++|.++++.|.....++||+|+.+.+++.+.+|+||++. .+..++|.+.. +. ..+.+.|
T Consensus 3 ~~~~y~~I~~~~~l~~~~~~l~~~~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl~~L 82 (605)
T 2kfn_A 3 SYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 82 (605)
T ss_dssp CSSSSEECCSHHHHHHHHHHHHTSSSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHH
T ss_pred ChhheEEecCHHHHHHHHHhcccCCeEEEEEecCCCCcccCceEEEEEEEcCCcEEEEeccccccccccccCHHHHHHHH
Confidence 34467889999999999999887889999999999988899999999997 45566663211 11 1234568
Q ss_pred HHhhcCCCceEEEecchhcHHHHHHHhCCCcCc-cchhHHHHHhhCCC--CCcHHHHHHHHcCCCC-------ccccccc
Q 003416 196 REVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN-MFDTGQASRVLKLE--RNSLEYLLHHFCGVNA-------NKEYQNA 265 (821)
Q Consensus 196 ~eLLeDp~IvKV~H~aK~DL~~L~rd~GI~~~n-lFDTqLAAyLLg~~--~~SLa~LvekyLgv~L-------dK~~Q~S 265 (821)
.++|+|+.+.||+|++++|+.+|. .+|+.+.+ +|||++|+|+|+++ +++|+.|+++||++.. .|+.+.+
T Consensus 83 ~~~L~d~~i~kV~hnak~D~~~L~-~~Gi~l~~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~ 161 (605)
T 2kfn_A 83 KPLLEDEKALKVGQNLKYDRGILA-NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQL 161 (605)
T ss_dssp HHHHTCTTSCEEESSHHHHHHHHH-TTTCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCC
T ss_pred HHHHcCCCCeEEEECcHHHHHHHH-HCCCCCCCccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCCcccC
Confidence 899999999999999999999995 58998876 89999999999986 6999999999998765 3555667
Q ss_pred cccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHhc
Q 003416 266 DWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300 (821)
Q Consensus 266 DW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eLee 300 (821)
+|..+|+ +++..||+.||.+++.||..|..+|.+
T Consensus 162 ~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~ 195 (605)
T 2kfn_A 162 TFNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQK 195 (605)
T ss_dssp CGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8998888 779999999999999999999998875
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.69 E-value=1.2e-16 Score=185.04 Aligned_cols=168 Identities=18% Similarity=0.113 Sum_probs=137.8
Q ss_pred CCCCCcEEecCHHHHHHHHHHHhcCCeeEEEeeecccccCCCcEEEEEEEeCCceEEEecCCcchhhhHHHHHhhcCCCc
Q 003416 125 LEQTPFKLVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTK 204 (821)
Q Consensus 125 l~~t~~~lIdT~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~LcLIQISt~~~~yLID~Lal~~~L~~~L~eLLeDp~I 204 (821)
+-...+..|++..+ .+ + ....++|+|+.+..++++.+|+||+++.+++|+|++... ...+.|+++|+|+++
T Consensus 12 ~~~~~~~~~~~~~~--~~---~--~~~~aldtE~~~~~~~~a~Lvgisla~~~~a~yIp~~~~--~~l~~Lk~lLed~~i 82 (592)
T 3pv8_A 12 LAKMAFTLADRVTE--EM---L--ADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETA--LADPQFVAWLGDETK 82 (592)
T ss_dssp --CCCCEECSSCCG--GG---G--CSEEEEEEECCSSSCTTCCCCEEEEEETTEEEEECHHHH--TTCHHHHHHHTCTTS
T ss_pred HHHhHHHHhhccch--hh---h--ccCcEEEEEEcCCccCcccEEEEEEEcCCceEEEccchh--hHHHHHHHHHhCCCC
Confidence 44455666665333 12 2 356799999999999999999999999888888864321 233568999999999
Q ss_pred eEEEecchhcHHHHHHHhCCCcC-ccchhHHHHHhhCCC--CCcHHHHHHHHcCCCCccccccccccC---CCCCHHHHH
Q 003416 205 KKVMHGADRDIVWLQRDFGIYLC-NMFDTGQASRVLKLE--RNSLEYLLHHFCGVNANKEYQNADWRV---RPLPDEMLR 278 (821)
Q Consensus 205 vKV~H~aK~DL~~L~rd~GI~~~-nlFDTqLAAyLLg~~--~~SLa~LvekyLgv~LdK~~Q~SDW~~---RPLs~eql~ 278 (821)
.||+|++|+|+.+|. .+|+.+. .+|||++|+|||+++ +++|+.|+++||++.+.+..+..+|.. +|..+.+..
T Consensus 83 ~KV~hn~K~Dl~vL~-~~Gi~l~g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~~ 161 (592)
T 3pv8_A 83 KKSMFDSKRAAVALK-WKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAE 161 (592)
T ss_dssp EEEESSHHHHHHHHH-HTTCCCCCEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHHHH
T ss_pred eEEEechHHHHHHHH-HcCCCCCCccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhcCccccccCccHHHHHH
Confidence 999999999999995 5899885 499999999999996 699999999999999988777777863 555678899
Q ss_pred HHHHhhHHHHHHHHHHHHHHhcCC
Q 003416 279 YAREDTHYLLYIYDIMKIKLSSMP 302 (821)
Q Consensus 279 YAA~DA~yLL~Lyd~L~~eLee~G 302 (821)
||+.||.++++||+.|..+|.+.+
T Consensus 162 YAa~DA~~l~~L~~~L~~~L~e~~ 185 (592)
T 3pv8_A 162 HLVRKAAAIWELERPFLDELRRNE 185 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcch
Confidence 999999999999999999999764
No 9
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=99.49 E-value=2.5e-14 Score=127.67 Aligned_cols=76 Identities=25% Similarity=0.360 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhHHHHHHHHHHhHhc
Q 003416 350 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQN 425 (821)
Q Consensus 350 ~~qlavlraL~aWRD~iAR~~Dep~~~VL~D~~LleLA~~~P~t~~eL~~l~g~~~~~vrr~g~eIL~iI~~a~~~ 425 (821)
+.++++|++|++||+++|+++|+||++||+|.+|++||..+|+|.++|.+|.|++...+++||+.||++|+++.+.
T Consensus 10 ~~~~~l~~~L~~wR~~~A~~~~vpp~~If~D~tL~eiA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~I~~~~~e 85 (89)
T 1wud_A 10 NYDRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDG 85 (89)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999988653
No 10
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.47 E-value=4.7e-14 Score=166.29 Aligned_cols=148 Identities=16% Similarity=0.118 Sum_probs=121.4
Q ss_pred eeEEEeeecccccCCCcEEEEEEEeC--CceEEEecCCcchhhhHHHHHhhcCCCceEEEecc-hhcHHHHHHHh-----
Q 003416 151 EFAVDLEHNQYRSFLGLTCLMQISTR--TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA-DRDIVWLQRDF----- 222 (821)
Q Consensus 151 ~IAVDtE~~~~rty~g~LcLIQISt~--~~~yLID~Lal~~~L~~~L~eLLeDp~IvKV~H~a-K~DL~~L~rd~----- 222 (821)
.|+||+|+.++..+..++|++||... +..++||+..+.. ..+.|.++|+ +.+.||+||+ ++|+.+|.+.+
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~~~~p~~i~~-~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~ 78 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFGA-YLDALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQLN 78 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEEEECGGGHHH-HHHHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHHC
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEEecCCCcEEEEChHHHHH-HHHHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhccc
Confidence 37999999999888899999999984 4678899876542 3457899999 8999999999 99999997654
Q ss_pred -CCCcC--ccchhHHHHHhhCCC--CCcHHHHHHHHc-------CCCC-----c-----------cccc--c-ccccCCC
Q 003416 223 -GIYLC--NMFDTGQASRVLKLE--RNSLEYLLHHFC-------GVNA-----N-----------KEYQ--N-ADWRVRP 271 (821)
Q Consensus 223 -GI~~~--nlFDTqLAAyLLg~~--~~SLa~LvekyL-------gv~L-----d-----------K~~Q--~-SDW~~RP 271 (821)
|+.+. .+|||++|+|+|++. .++|+.|+++|| +..+ + |+.+ . .+|..
T Consensus 79 ~Gi~l~~~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~-- 156 (698)
T 1x9m_A 79 REFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWN-- 156 (698)
T ss_dssp CCCCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTS--
T ss_pred CCccCCCCcchhHHHHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCccc--
Confidence 88766 499999999999985 689999999997 4332 1 2221 1 27874
Q ss_pred CCHHHHHHHHHhhHHHHHHHHHHHHHHhcCC
Q 003416 272 LPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 302 (821)
Q Consensus 272 Ls~eql~YAA~DA~yLL~Lyd~L~~eLee~G 302 (821)
+++++..||+.||.+++.||..|..+|.+.+
T Consensus 157 ~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~ 187 (698)
T 1x9m_A 157 FNEEMMDYNVQDVVVTKALLEKLLSDKHYFP 187 (698)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTCTTTSC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6688999999999999999999999988764
No 11
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=99.45 E-value=1.4e-13 Score=119.37 Aligned_cols=72 Identities=25% Similarity=0.266 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhHHHHHHHHHHhH
Q 003416 352 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 423 (821)
Q Consensus 352 qlavlraL~aWRD~iAR~~Dep~~~VL~D~~LleLA~~~P~t~~eL~~l~g~~~~~vrr~g~eIL~iI~~a~ 423 (821)
+.++|++|++||+++|+++|+||++||+|.+|++||..+|+|.++|.++.|+....+++||+.|+++|++..
T Consensus 4 d~~l~~~L~~wR~~~A~~~~vpp~~I~~d~~L~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~~ 75 (77)
T 2rhf_A 4 NADLSEALRELRRELMKETGYSAFVVFTNATLEALAARQPRTLAELAEVPGLGEKRIEAYGERILDAINTVL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 467999999999999999999999999999999999999999999999999999999999999999998864
No 12
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=99.39 E-value=7.1e-13 Score=117.24 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhHHHHHHHHHHhH
Q 003416 350 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 423 (821)
Q Consensus 350 ~~qlavlraL~aWRD~iAR~~Dep~~~VL~D~~LleLA~~~P~t~~eL~~l~g~~~~~vrr~g~eIL~iI~~a~ 423 (821)
+....+|++|++||+++|+++|+|+++||+|.+|.+||..+|+|.++|.++.|++...+++||+.||++|+.+.
T Consensus 4 ~~~~~l~~~L~~wR~~~A~~~~vp~~~If~d~tL~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~~ 77 (85)
T 2kv2_A 4 EMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYS 77 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCSCHHHHHTSSSCCHHHHHHTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCcceeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999873
No 13
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=8e-13 Score=120.83 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhHHHHHHHHHHh
Q 003416 350 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 422 (821)
Q Consensus 350 ~~qlavlraL~aWRD~iAR~~Dep~~~VL~D~~LleLA~~~P~t~~eL~~l~g~~~~~vrr~g~eIL~iI~~a 422 (821)
..+.++|++|++||+++|+++|+|+++||+|.+|.+||..+|+|.++|.+|.|++...+++||+.||++|+++
T Consensus 19 e~~~~l~~~L~~wR~~~A~~~~vP~~~If~D~tL~eiA~~~P~t~~eL~~I~Gvg~~k~~~yG~~~L~~I~~~ 91 (101)
T 2rrd_A 19 EMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKY 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCCHHHHHTSTTCCHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4478899999999999999999999999999999999999999999999999999999999999999999987
No 14
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=99.34 E-value=3.5e-12 Score=146.46 Aligned_cols=118 Identities=10% Similarity=-0.019 Sum_probs=102.6
Q ss_pred CeeEEEeeecccccCCCcEEEEEEEeCCceEEEecCCcchhhhHHHHHhhcCCCceEEEecchhcHHHHHHHhCCCcCcc
Q 003416 150 DEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 229 (821)
Q Consensus 150 ~~IAVDtE~~~~rty~g~LcLIQISt~~~~yLID~Lal~~~L~~~L~eLLeDp~IvKV~H~aK~DL~~L~rd~GI~~~nl 229 (821)
+.+++|||+.+..++++.+|+||++..+++|+|+ ...+.|.++|+| +.||+|++++|+. .+|+.+..+
T Consensus 11 ~~valDtE~~~~~~~~a~Lvgi~la~~~~a~~i~------~~l~~l~~~l~d--~~kV~hn~K~Dl~----~~Gi~~~~~ 78 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMWADLLALAAARGGRVHRAP------EPYKALRDLKEA--RGLLAKDLSVLAL----REGLGLPPG 78 (540)
T ss_dssp TTCEEEEEESSSCTTTCCEEEEEEEETTEEEECS------SHHHHHTTCSSB--CSTTHHHHHHHHH----HTTCCCCBC
T ss_pred CceEEEEEecCCccCcccEEEEEEEcCCEEEEeh------hhHHHHHHHHcC--CCEEEeccHHHHH----HcCCCCCcc
Confidence 4599999999999999999999999988888876 123468899998 8899999999999 478877789
Q ss_pred chhHHHHHhhCCCCCcHHHHHHHHcCCCCccccccccccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003416 230 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298 (821)
Q Consensus 230 FDTqLAAyLLg~~~~SLa~LvekyLgv~LdK~~Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL 298 (821)
|||++|||+|++++++|+.|+++|++. +.| +|..||.+++.||..|..+|
T Consensus 79 fDT~laAyLL~p~~~~L~~La~~yl~~-~gk------------------~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 79 DDPMLLAYLLDPSNTTPEGVARRYGGE-WTE------------------EAGERAALSERLFANLWGRL 128 (540)
T ss_dssp CCHHHHHHHHCTTCCCHHHHHHHHTSC-CCS------------------CHHHHHHHHHHHHHHHHHHT
T ss_pred eeHHHHHHHhCCCCCCHHHHHHHHhhh-hcc------------------chHHHHHHHHHHHHHHHHHH
Confidence 999999999999889999999999986 211 36789999999999999999
No 15
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=99.31 E-value=3e-12 Score=117.42 Aligned_cols=72 Identities=25% Similarity=0.338 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhHHHHHHHHHHhH
Q 003416 351 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 423 (821)
Q Consensus 351 ~qlavlraL~aWRD~iAR~~Dep~~~VL~D~~LleLA~~~P~t~~eL~~l~g~~~~~vrr~g~eIL~iI~~a~ 423 (821)
.+.++|++|++||.++|+++|+|+++||+|.+|.+||..+|+|.++|.+|.|++..++++| +.||++|+.+.
T Consensus 13 ~d~~l~~~L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~ 84 (103)
T 2e1f_A 13 TQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLLEVIKHFC 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTCCHHHHHHT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhcCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999999999999 99999998863
No 16
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=99.31 E-value=3.4e-12 Score=118.97 Aligned_cols=73 Identities=25% Similarity=0.324 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhHHHHHHHHHHhHh
Q 003416 351 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 424 (821)
Q Consensus 351 ~qlavlraL~aWRD~iAR~~Dep~~~VL~D~~LleLA~~~P~t~~eL~~l~g~~~~~vrr~g~eIL~iI~~a~~ 424 (821)
.+.++|++|++||.++|+++|+|+++||+|.+|.+||..+|+|.++|.+|.|++..++++| +.||++|+.+..
T Consensus 20 ~d~~l~~~L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~~ 92 (113)
T 2dgz_A 20 TQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLWEVIKHFCQ 92 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCSHHHHHHSSSCCTTGGGGG-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHH-HHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999999999999 999999988743
No 17
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.26 E-value=3.8e-06 Score=85.74 Aligned_cols=156 Identities=13% Similarity=0.124 Sum_probs=99.8
Q ss_pred EecCHHHHHHHHHHHhcCCeeEEEeeecccccCCCcEEEEEEEe-----CCc-------eEEEecC---Cc---------
Q 003416 132 LVEEVKDLKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQIST-----RTE-------DFVVDTL---KL--------- 187 (821)
Q Consensus 132 lIdT~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~LcLIQISt-----~~~-------~yLID~L---al--------- 187 (821)
-|++.+.+..+...+....+++||+|+.+..+....++-|.+.. .+. ..+|.|. .+
T Consensus 20 ~~~~~~~~~~l~~~l~~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~G 99 (235)
T 3v9w_A 20 HMSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 99 (235)
T ss_dssp ---------CHHHHTTTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHC
T ss_pred cccccccccCchhcccCCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhC
Confidence 35667777888888888899999999998876655554443331 111 1234441 00
Q ss_pred -ch-----------hhhHHHHHhhcC-------CCceEEEecchhcHHHHHHH---hCCCc-----CccchhHHHHHhhC
Q 003416 188 -RV-----------QVGPYLREVFKD-------PTKKKVMHGADRDIVWLQRD---FGIYL-----CNMFDTGQASRVLK 240 (821)
Q Consensus 188 -~~-----------~L~~~L~eLLeD-------p~IvKV~H~aK~DL~~L~rd---~GI~~-----~nlFDTqLAAyLLg 240 (821)
.. .....|.+++.+ ...+.|+|++++|+.+|.+. +|+.. ..++||+.+++.+.
T Consensus 100 It~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~ 179 (235)
T 3v9w_A 100 IDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLAL 179 (235)
T ss_dssp CCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHH
T ss_pred CCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHh
Confidence 00 122334445532 46788999999999998654 37742 24889999999876
Q ss_pred CCCCcHHHHHHHHcCCCCccccccccccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHhcCCC
Q 003416 241 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 303 (821)
Q Consensus 241 ~~~~SLa~LvekyLgv~LdK~~Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eLee~G~ 303 (821)
+ .++|..|+++| |+..+. ....+|..||..+..||..|..+|.+.+.
T Consensus 180 p-~~~L~~l~~~~-gi~~~~--------------~~~H~Al~DA~~ta~l~~~l~~~l~~~~~ 226 (235)
T 3v9w_A 180 G-QTVLSKACQTA-GMDFDS--------------TQAHSALYDTERTAVLFCEIVNRWKRLGG 226 (235)
T ss_dssp S-CCSHHHHHHHH-TCCCCT--------------TTTTCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred C-CCCHHHHHHHc-CCCCCC--------------CCCcChHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4 57999999876 543321 12356999999999999999999998763
No 18
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=98.20 E-value=2.9e-06 Score=102.10 Aligned_cols=117 Identities=13% Similarity=0.024 Sum_probs=91.7
Q ss_pred CCeeEEEeeecccccCCCcEEEEEEEeC-CceEEEecCCcchhhhHHHHHhhcCCCceEEEecchhcHHHHHHHhCCCcC
Q 003416 149 VDEFAVDLEHNQYRSFLGLTCLMQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLC 227 (821)
Q Consensus 149 a~~IAVDtE~~~~rty~g~LcLIQISt~-~~~yLID~Lal~~~L~~~L~eLLeDp~IvKV~H~aK~DL~~L~rd~GI~~~ 227 (821)
...+++|+|..+ .+.+.+| ++++.. +.+++|+. . + +.|+++|+|+.+ ++|+|+.+|. .+|+.+.
T Consensus 304 ~~~va~d~et~~--~~~~~l~-vg~a~~~g~a~yvp~--~--~--~~Lk~lLed~~i-----n~K~d~~~L~-~~Gi~~~ 368 (832)
T 1bgx_T 304 GAFVGFVLSRKE--PMWADLL-ALAAARGGRVHRAPE--P--Y--KALRDLKEARGL-----LAKDLSVLAL-REGLGLP 368 (832)
T ss_dssp TCCBEEECSSSC--TTTCCCC-EEECBSSSEEECCSC--H--H--HHHHHCSSBCBT-----THHHHHHHHH-HHTCCCC
T ss_pred CceEEEEEecCC--cccCcee-EEEEEcCCCEEEEEC--C--H--HHHHHHHhCCCC-----ChHHHHHHHH-HcCCccC
Confidence 355899999876 4456775 557764 44566533 1 2 468999999987 9999999995 5999988
Q ss_pred ccchhHHHHHhhCCCCCcHHHHHHHHcCCCCccccccccccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 003416 228 NMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299 (821)
Q Consensus 228 nlFDTqLAAyLLg~~~~SLa~LvekyLgv~LdK~~Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eLe 299 (821)
.+|||++|+|+|++..++|+.|+++| | | +|. + + || .||.++++||..|..+|.
T Consensus 369 ~~~Dt~laayLl~p~~~~l~~l~~~~-g----k-----~~~-----~-~--ya-~da~~~~~l~~~l~~~L~ 421 (832)
T 1bgx_T 369 PGDDPMLLAYLLDPSNTTPEGVARRY-G----G-----EWT-----E-E--AG-ERAALSERLFANLWGRLE 421 (832)
T ss_dssp BCCCHHHHHHHHCTTCCSTTHHHHHH-S----C-----CCC-----S-S--HH-HHHHHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHcCCCCCCHHHHHHHh-C----C-----Cch-----H-H--HH-HHHHHHHHHHHHHHHHHh
Confidence 77999999999998678999999999 3 2 241 1 1 88 799999999999999997
No 19
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=97.12 E-value=0.0047 Score=62.45 Aligned_cols=85 Identities=19% Similarity=0.155 Sum_probs=62.1
Q ss_pred CceEEEecchhcHHHHHHH---hCCC--c---CccchhHHHHHhhCCCCCcHHHHHHHHcCCCCccccccccccCCCCCH
Q 003416 203 TKKKVMHGADRDIVWLQRD---FGIY--L---CNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPD 274 (821)
Q Consensus 203 ~IvKV~H~aK~DL~~L~rd---~GI~--~---~nlFDTqLAAyLLg~~~~SLa~LvekyLgv~LdK~~Q~SDW~~RPLs~ 274 (821)
..+.|+|++.+|+.+|.+. +|+. + ..++||+..++.+- ++++|..|++. +|+.....
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~-~~~~L~~l~~~-~gi~~~~~------------- 190 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAY-GQTVLAKACQA-AGMEFDNR------------- 190 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHH-SCCSHHHHHHH-TTCCCCTT-------------
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHc-CCCCHHHHHHH-cCCCcCCC-------------
Confidence 4567999999999988643 4664 2 24789998776543 35789999886 47654311
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCC
Q 003416 275 EMLRYAREDTHYLLYIYDIMKIKLSSMPK 303 (821)
Q Consensus 275 eql~YAA~DA~yLL~Lyd~L~~eLee~G~ 303 (821)
....|..||..+..|+..|..++.+.|.
T Consensus 191 -~~H~Al~Da~~ta~l~~~l~~~~~~~~~ 218 (224)
T 2f96_A 191 -EAHSARYDTEKTAELFCGIVNRWKEMGG 218 (224)
T ss_dssp -SCCCHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred -CCCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1123889999999999999999987763
No 20
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=96.87 E-value=0.0055 Score=60.31 Aligned_cols=134 Identities=14% Similarity=0.103 Sum_probs=83.1
Q ss_pred hcCCeeEEEeeecccccCCCcEEEEEEEe-CCc------eEEEecCC-cc--------------------hhhhHHHHHh
Q 003416 147 KSVDEFAVDLEHNQYRSFLGLTCLMQIST-RTE------DFVVDTLK-LR--------------------VQVGPYLREV 198 (821)
Q Consensus 147 ~~a~~IAVDtE~~~~rty~g~LcLIQISt-~~~------~yLID~La-l~--------------------~~L~~~L~eL 198 (821)
.....++||+|+.+..+....++-|.+.. .++ ..+|.|.. +. .++...|..+
T Consensus 10 ~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~~ 89 (186)
T 2p1j_A 10 GDATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGF 89 (186)
T ss_dssp ---CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHHHHHH
T ss_pred cCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHHHHHH
Confidence 44678999999998776555544333221 222 12444321 10 0122345566
Q ss_pred hcCCCceEEEecchhcHHHHHHH---hCCCc--CccchhHHHHHhhC-CCCCcHHHHHHHHcCCCCccccccccccCCCC
Q 003416 199 FKDPTKKKVMHGADRDIVWLQRD---FGIYL--CNMFDTGQASRVLK-LERNSLEYLLHHFCGVNANKEYQNADWRVRPL 272 (821)
Q Consensus 199 LeDp~IvKV~H~aK~DL~~L~rd---~GI~~--~nlFDTqLAAyLLg-~~~~SLa~LvekyLgv~LdK~~Q~SDW~~RPL 272 (821)
+.+ .+.|+|++.+|+.+|.+. +|+.+ ..++||+..++.+. ..+++|..|++. +|+....
T Consensus 90 l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~~~~~~~L~~l~~~-~gi~~~~------------ 154 (186)
T 2p1j_A 90 LED--SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLKLRSYSLDSVVEK-LGLGPFR------------ 154 (186)
T ss_dssp SSS--CEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHTCCSCCSHHHHHHH-TTCCSTT------------
T ss_pred HCC--CEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHhhcCCCCHHHHHHH-cCCCCCC------------
Confidence 654 467999999999998643 46653 34889998776553 447999999986 5765321
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 003416 273 PDEMLRYAREDTHYLLYIYDIMKIKLS 299 (821)
Q Consensus 273 s~eql~YAA~DA~yLL~Lyd~L~~eLe 299 (821)
...|..||..+..||..|..+..
T Consensus 155 ----~H~Al~Da~~t~~l~~~l~~~~~ 177 (186)
T 2p1j_A 155 ----HHRALDDARVTAQVFLRFVEMMK 177 (186)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTTCC-
T ss_pred ----CcCHHHHHHHHHHHHHHHHHHHH
Confidence 13588999999999988754433
No 21
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=96.79 E-value=0.006 Score=62.97 Aligned_cols=91 Identities=20% Similarity=0.112 Sum_probs=64.7
Q ss_pred HHHHHhhcC--CCceEEEecc-hhcHHHHHHH---hCCCc--C--ccchhHHHHHhhC----------CCCCcHHHHHHH
Q 003416 193 PYLREVFKD--PTKKKVMHGA-DRDIVWLQRD---FGIYL--C--NMFDTGQASRVLK----------LERNSLEYLLHH 252 (821)
Q Consensus 193 ~~L~eLLeD--p~IvKV~H~a-K~DL~~L~rd---~GI~~--~--nlFDTqLAAyLLg----------~~~~SLa~Lvek 252 (821)
+.|..++.+ +..+.|.||+ .+|+.+|.+. +|+.. . .++||+..++.+. .++++|..|+++
T Consensus 106 ~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~ 185 (242)
T 3mxm_B 106 ILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTR 185 (242)
T ss_dssp HHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHHH
Confidence 344556665 2256799997 9999998754 46543 2 4789998877432 247899999999
Q ss_pred HcCCCCccccccccccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 003416 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299 (821)
Q Consensus 253 yLgv~LdK~~Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eLe 299 (821)
++|+..... .-|..||..+..|+..+..++.
T Consensus 186 ~~gi~~~~~----------------H~Al~Da~ata~l~~~~~~~~~ 216 (242)
T 3mxm_B 186 LYWQAPTDS----------------HTAEGDDLTLLSICQWKPQALL 216 (242)
T ss_dssp HHSSCCSST----------------TSHHHHHHHHHHHHTSSHHHHH
T ss_pred HhCCCCCCC----------------cChHHHHHHHHHHHHHHHHHHH
Confidence 999875421 2278999999999888776665
No 22
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=96.60 E-value=0.02 Score=56.42 Aligned_cols=136 Identities=18% Similarity=0.131 Sum_probs=84.6
Q ss_pred CCeeEEEeeecccccCCCcEEEEEEEe--CC-ce---EEEecCC-cc--------------------hhhhHHHHHhhcC
Q 003416 149 VDEFAVDLEHNQYRSFLGLTCLMQIST--RT-ED---FVVDTLK-LR--------------------VQVGPYLREVFKD 201 (821)
Q Consensus 149 a~~IAVDtE~~~~rty~g~LcLIQISt--~~-~~---yLID~La-l~--------------------~~L~~~L~eLLeD 201 (821)
..+++||+|+.+..+... ..+++|+. .+ .. .+|.|.. +. .++.+.|..++.+
T Consensus 5 ~~~vviD~ETTGl~~~~~-~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~~~~l~~ 83 (189)
T 1wlj_A 5 REVVAMDCEMVGLGPHRE-SGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLLKG 83 (189)
T ss_dssp -CEEEEEEEEEEETTTTE-EEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHHTT
T ss_pred CeEEEEEeECcCcCCCCC-ceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHHHHHHCC
Confidence 468999999988764431 22344443 22 22 2444321 10 0123345567754
Q ss_pred CCceEEEecchhcHHHHHHHhCCCcCccchhHHHHHh---hCC---CCCcHHHHHHHHcCCCCccccccccccCCCCCHH
Q 003416 202 PTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV---LKL---ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDE 275 (821)
Q Consensus 202 p~IvKV~H~aK~DL~~L~rd~GI~~~nlFDTqLAAyL---Lg~---~~~SLa~LvekyLgv~LdK~~Q~SDW~~RPLs~e 275 (821)
.+.|+|++.+|+.+|...+ ....++||+....+ .+. ..++|..|+++++|+......+.
T Consensus 84 --~~lV~hn~~fD~~~L~~~~--~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~----------- 148 (189)
T 1wlj_A 84 --KLVVGHDLKHDFQALKEDM--SGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLG----------- 148 (189)
T ss_dssp --SEEEESSHHHHHHHTTCCC--TTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTC-----------
T ss_pred --CEEEECCcHHHHHHHHHhC--CCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCC-----------
Confidence 5789999999999995432 12348899864321 132 36899999999889876432101
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCC
Q 003416 276 MLRYAREDTHYLLYIYDIMKIKLSSMP 302 (821)
Q Consensus 276 ql~YAA~DA~yLL~Lyd~L~~eLee~G 302 (821)
.-|..||..+..||..|..++...+
T Consensus 149 --H~Al~Da~ata~l~~~l~~~~~~~~ 173 (189)
T 1wlj_A 149 --HSSVEDARATMELYQISQRIRARRG 173 (189)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --cCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 2378999999999999999888765
No 23
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=96.37 E-value=0.035 Score=56.26 Aligned_cols=91 Identities=26% Similarity=0.244 Sum_probs=64.2
Q ss_pred HHHHHhhcCC--CceEEEecc-hhcHHHHHH---HhCCCcC---ccchhHHHHHhhC---------C--CCCcHHHHHHH
Q 003416 193 PYLREVFKDP--TKKKVMHGA-DRDIVWLQR---DFGIYLC---NMFDTGQASRVLK---------L--ERNSLEYLLHH 252 (821)
Q Consensus 193 ~~L~eLLeDp--~IvKV~H~a-K~DL~~L~r---d~GI~~~---nlFDTqLAAyLLg---------~--~~~SLa~Lvek 252 (821)
..|..++..- ..+.|+|++ .+|+.+|.+ .+|+... .++||+..++.+. + .+++|..|+++
T Consensus 101 ~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~~ 180 (238)
T 1y97_A 101 RTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHR 180 (238)
T ss_dssp HHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC----------CCSHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHHH
Confidence 4466677652 256799999 999998864 3566542 3789987766553 2 36999999998
Q ss_pred HcCCCCccccccccccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 003416 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299 (821)
Q Consensus 253 yLgv~LdK~~Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eLe 299 (821)
++|+.... ...|..||..+..|+..|..++.
T Consensus 181 ~~gi~~~~----------------~H~Al~Da~~ta~l~~~l~~~~~ 211 (238)
T 1y97_A 181 YFRAEPSA----------------AHSAEGDVHTLLLIFLHRAAELL 211 (238)
T ss_dssp HHSSCCC-------------------CHHHHHHHHHHHHHHTHHHHH
T ss_pred HhCCCCcc----------------CccHHHHHHHHHHHHHHHHHHHH
Confidence 88865421 24588999999999998876665
No 24
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=96.19 E-value=0.032 Score=60.31 Aligned_cols=90 Identities=18% Similarity=0.076 Sum_probs=63.9
Q ss_pred HHHHhhcC--CCceEEEec-chhcHHHHHHH---hCCCc--C--ccchhHHHHH-hhC---------CCCCcHHHHHHHH
Q 003416 194 YLREVFKD--PTKKKVMHG-ADRDIVWLQRD---FGIYL--C--NMFDTGQASR-VLK---------LERNSLEYLLHHF 253 (821)
Q Consensus 194 ~L~eLLeD--p~IvKV~H~-aK~DL~~L~rd---~GI~~--~--nlFDTqLAAy-LLg---------~~~~SLa~Lveky 253 (821)
.|.+++.+ ...+.|.|| +.+|+.+|.+. +|+.. . .++||+...+ +.. ..+++|..|+++|
T Consensus 107 ~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~l 186 (314)
T 3u3y_B 107 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRL 186 (314)
T ss_dssp HHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC-------CCCCSHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHHh
Confidence 34556665 225779999 89999998754 46543 1 2679987655 322 1468999999998
Q ss_pred cCCCCccccccccccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 003416 254 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299 (821)
Q Consensus 254 Lgv~LdK~~Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eLe 299 (821)
+|+.....+ -|..||..+..|+..+..++.
T Consensus 187 ~gi~~~~aH----------------rAl~DA~ata~lf~~l~~~~l 216 (314)
T 3u3y_B 187 YWQAPTDSH----------------TAEGHVLTLLSICQWKPQALL 216 (314)
T ss_dssp HSSCCSCSS----------------SHHHHHHHHHHHHHSSHHHHH
T ss_pred cCCCCCCCC----------------CHHHHHHHHHHHHHHHHHHHH
Confidence 898754211 278999999999998877765
No 25
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=95.89 E-value=0.13 Score=50.52 Aligned_cols=85 Identities=24% Similarity=0.288 Sum_probs=58.8
Q ss_pred HHHHhhcCCCceEEEecchhcHHHHHHH---hCCC---c---CccchhHHHHHhhCCC-CCcHHHHHHHHcCCCCccccc
Q 003416 194 YLREVFKDPTKKKVMHGADRDIVWLQRD---FGIY---L---CNMFDTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQ 263 (821)
Q Consensus 194 ~L~eLLeDp~IvKV~H~aK~DL~~L~rd---~GI~---~---~nlFDTqLAAyLLg~~-~~SLa~LvekyLgv~LdK~~Q 263 (821)
.|..++.+ -..|+|++.+|+.+|.+. +|+. + ..++||+..++.+-++ .++|..|++. +|+......
T Consensus 88 ~~~~~l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~~~~L~~l~~~-~gi~~~~~~- 163 (194)
T 2gui_A 88 EFMDYIRG--AELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCAR-YEIDNSKRT- 163 (194)
T ss_dssp HHHHHHTT--SEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHH-TTCCCTTCS-
T ss_pred HHHHHHCC--CeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCCCCCHHHHHHH-cCcCCCCCC-
Confidence 45566654 356899999999988653 4665 2 3588998777666554 5899999886 576543100
Q ss_pred cccccCCCCCHHHHHHHHHhhHHHHHHHHHHH
Q 003416 264 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 295 (821)
Q Consensus 264 ~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~ 295 (821)
..-|..||..+..||..|.
T Consensus 164 -------------~H~Al~Da~~ta~l~~~l~ 182 (194)
T 2gui_A 164 -------------LHGALLDAQILAEVYLAMT 182 (194)
T ss_dssp -------------SCCHHHHHHHHHHHHHHHT
T ss_pred -------------CCChHHHHHHHHHHHHHHH
Confidence 1227889999999998764
No 26
>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1
Probab=94.89 E-value=0.089 Score=46.22 Aligned_cols=67 Identities=16% Similarity=0.252 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHhCCCCHHHHHhhhcCChhHHH--HhHHHHHHHHHH
Q 003416 355 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE--RYMGPVLSIIKN 421 (821)
Q Consensus 355 vlraL~aWRD~iAR~~Dep~~~VL~D~~LleLA~~~P~t~~eL~~l~g~~~~~vr--r~g~eIL~iI~~ 421 (821)
.+..|.+-|..++.+.+.|...+|+|-+|.+||..+|+|.+++..|.|..+..++ .|-..++-.+++
T Consensus 8 ay~~Lr~~~i~~s~~~~p~~s~~m~d~~Lrk~A~~LP~~e~eF~~L~g~~~~~~~~fk~FK~~l~~L~k 76 (81)
T 1d8b_A 8 TYERLRELSLNLGNRMVPPVGNFMPDSILKKMAAILPMNDSAFATLGTVEDKYRRRFKYFKATIADLSK 76 (81)
T ss_dssp HHHHHHHHHHHHHHSSSSCCSCSSCHHHHHHHHHHCCCSHHHHGGGSCCCHHHHHHGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCchhhhccHHHHHHHHHHCCCCHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999999999887777 455555544443
No 27
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=94.36 E-value=0.3 Score=55.52 Aligned_cols=134 Identities=14% Similarity=0.029 Sum_probs=78.2
Q ss_pred HhcCCeeEEEeeecccccCCCcEEEEEEE-eC-C-------ceEEEecCC-c--c---------------------hhhh
Q 003416 146 LKSVDEFAVDLEHNQYRSFLGLTCLMQIS-TR-T-------EDFVVDTLK-L--R---------------------VQVG 192 (821)
Q Consensus 146 L~~a~~IAVDtE~~~~rty~g~LcLIQIS-t~-~-------~~yLID~La-l--~---------------------~~L~ 192 (821)
+....++.+|+|+.+..+....++-|.+. +. + -..+|.|.. + . .++.
T Consensus 6 ~~~~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl 85 (482)
T 2qxf_A 6 KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFA 85 (482)
T ss_dssp -CCCEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHH
T ss_pred CCCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHH
Confidence 34557899999999887655554332221 12 1 123444321 0 0 0122
Q ss_pred HHHHHhhcCCCceEEEec-chhcHHHHHHH---hCCCc--------CccchhHHHHHhh---------------CCCCCc
Q 003416 193 PYLREVFKDPTKKKVMHG-ADRDIVWLQRD---FGIYL--------CNMFDTGQASRVL---------------KLERNS 245 (821)
Q Consensus 193 ~~L~eLLeDp~IvKV~H~-aK~DL~~L~rd---~GI~~--------~nlFDTqLAAyLL---------------g~~~~S 245 (821)
..|..++..+..+.|+|| +.+|+.+|.+. +|+.+ ...+||.-.++.+ +.++++
T Consensus 86 ~~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~k 165 (482)
T 2qxf_A 86 ARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFR 165 (482)
T ss_dssp HHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCC
T ss_pred HHHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCC
Confidence 234456664567789999 89999988643 34432 3367887655543 223688
Q ss_pred HHHHHHHHcCCCCccccccccccCCCCCHHHHHHHHHhhHHHHHHHHHHHH
Q 003416 246 LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296 (821)
Q Consensus 246 La~LvekyLgv~LdK~~Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~ 296 (821)
|..|++.+ |+..... .-|..||..+..|+..|..
T Consensus 166 L~~L~~~~-Gi~~~~a----------------HrAL~DA~aTa~l~~~l~~ 199 (482)
T 2qxf_A 166 LEHLTKAN-GIEHSNA----------------HDAMADVYATIAMAKLVKT 199 (482)
T ss_dssp HHHHHHHT-TCCCC-------------------CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCCCCC----------------CCHHHHHHHHHHHHHHHHH
Confidence 99998754 7654211 2266888888888887754
No 28
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=92.67 E-value=0.96 Score=47.85 Aligned_cols=89 Identities=13% Similarity=0.153 Sum_probs=59.0
Q ss_pred HHHHhhcCC-----CceEEEecchhcHH-HHHHH---hCCCc----CccchhHHHH-HhhCCCC--CcHHHHHHHHcCCC
Q 003416 194 YLREVFKDP-----TKKKVMHGADRDIV-WLQRD---FGIYL----CNMFDTGQAS-RVLKLER--NSLEYLLHHFCGVN 257 (821)
Q Consensus 194 ~L~eLLeDp-----~IvKV~H~aK~DL~-~L~rd---~GI~~----~nlFDTqLAA-yLLg~~~--~SLa~LvekyLgv~ 257 (821)
.|..++.+. ..+.|+|++.+|+. +|.+. +|+.. ..++||+... .+++... ++|..|+++ +|+.
T Consensus 159 ~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~gi~ 237 (299)
T 1zbh_A 159 KVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LGMD 237 (299)
T ss_dssp HHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-TTCC
T ss_pred HHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHH-cCCC
Confidence 344566553 24679999999998 88653 45543 2478997544 3445443 899999976 5765
Q ss_pred CccccccccccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003416 258 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298 (821)
Q Consensus 258 LdK~~Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL 298 (821)
.... ..-|..||.++..|+..|..+.
T Consensus 238 ~~g~---------------~H~Al~DA~ata~l~~~l~~~~ 263 (299)
T 1zbh_A 238 YDGR---------------PNCGLDDSKNIARIAVRMLQDG 263 (299)
T ss_dssp CCSC---------------TTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCC---------------CCChHHHHHHHHHHHHHHHHhC
Confidence 4210 0227889999999998876543
No 29
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=91.08 E-value=1.6 Score=42.70 Aligned_cols=88 Identities=13% Similarity=0.116 Sum_probs=57.8
Q ss_pred HHHhhcCC-----CceEEEecchhcHH-HHHH---HhCCCcC----ccchhHHHHH-hhCCC--CCcHHHHHHHHcCCCC
Q 003416 195 LREVFKDP-----TKKKVMHGADRDIV-WLQR---DFGIYLC----NMFDTGQASR-VLKLE--RNSLEYLLHHFCGVNA 258 (821)
Q Consensus 195 L~eLLeDp-----~IvKV~H~aK~DL~-~L~r---d~GI~~~----nlFDTqLAAy-LLg~~--~~SLa~LvekyLgv~L 258 (821)
|..++.+. ....|+|++.+|+. +|.+ .+|+... .++||+..+. +++.+ .++|..|++. +|+..
T Consensus 92 ~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~-~gi~~ 170 (204)
T 1w0h_A 92 VIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LGMDY 170 (204)
T ss_dssp HHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-TTCCC
T ss_pred HHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHHHH-cCCCC
Confidence 44555542 23579999999996 8854 3565432 5789986654 44432 4899999876 47654
Q ss_pred ccccccccccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003416 259 NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298 (821)
Q Consensus 259 dK~~Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL 298 (821)
... . .-|..||..+..|+..|..+.
T Consensus 171 ~~~--~-------------H~Al~Da~~ta~l~~~l~~~~ 195 (204)
T 1w0h_A 171 DGR--P-------------HCGLDDSKNIARIAVRMLQDG 195 (204)
T ss_dssp CSC--T-------------TCHHHHHHHHHHHHHHHHHTT
T ss_pred CCC--c-------------cCcHHHHHHHHHHHHHHHHCC
Confidence 310 0 127889999999998876543
No 30
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=78.93 E-value=18 Score=43.38 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=84.6
Q ss_pred cCCeeEEEeeecccc---cCCCcEEEEEEEe--CCceEEEec--C--------CcchhhhHHHHHhhc--CCCceEEEec
Q 003416 148 SVDEFAVDLEHNQYR---SFLGLTCLMQIST--RTEDFVVDT--L--------KLRVQVGPYLREVFK--DPTKKKVMHG 210 (821)
Q Consensus 148 ~a~~IAVDtE~~~~r---ty~g~LcLIQISt--~~~~yLID~--L--------al~~~L~~~L~eLLe--Dp~IvKV~H~ 210 (821)
.-..+++|+|..... .-... +++|+. .+...++-. + .-..++...+..++. ||.| -|+||
T Consensus 134 ~l~ilsfDIEt~~~~~p~~~~d~--Ii~Is~~~~~~~~~~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~dPDi-ivGyN 210 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEFGTGP--ILMISYADGSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDPDV-LITYN 210 (775)
T ss_dssp CCCEEEEEEEECCCTTCCTTCSC--EEEEEEECSSCEEEEESSCCCCSSEEECSCHHHHHHHHHHHHHHHCCSE-EEESS
T ss_pred CcEEEEEEEEEcCCCCCCCCCCc--EEEEEEEecCCCeeEeeccccccceEEcCCHHHHHHHHHHHHHhcCCCE-EEEeC
Confidence 457899999998621 11222 455553 333332211 1 001123333444443 6775 48888
Q ss_pred c-hhcHHHHHHH---hCCCc------------------------CccchhHHHHH-hhCCCCCcHHHHHHHHcCCCCcc-
Q 003416 211 A-DRDIVWLQRD---FGIYL------------------------CNMFDTGQASR-VLKLERNSLEYLLHHFCGVNANK- 260 (821)
Q Consensus 211 a-K~DL~~L~rd---~GI~~------------------------~nlFDTqLAAy-LLg~~~~SLa~LvekyLgv~LdK- 260 (821)
. .+|+..|... +|+.+ ..++|++..+. .+...+++|..+++++||..-..
T Consensus 211 ~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv 290 (775)
T 1qht_A 211 GDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKV 290 (775)
T ss_dssp TTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSCCSCCCHHHHHHHHHCCCCCCC
T ss_pred CCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcCcCcCCHHHHHHHHhCCCCCcc
Confidence 7 6688776543 34432 12668886665 34456799999999999974321
Q ss_pred -cccc-ccccCCCCCHHHHHHHHHhhHHHHHHHHHHHH
Q 003416 261 -EYQN-ADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296 (821)
Q Consensus 261 -~~Q~-SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~ 296 (821)
.... .-|...+--...+.|...||..++.|+..+..
T Consensus 291 ~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~~ 328 (775)
T 1qht_A 291 YAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFFP 328 (775)
T ss_dssp CHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 1111 12544331167899999999999999876643
No 31
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=77.36 E-value=13 Score=35.53 Aligned_cols=81 Identities=16% Similarity=0.089 Sum_probs=45.0
Q ss_pred HHHHhhcCC----CceEEEecchhcHHHHHHHhC---CCc-Cccch--hHH-HHHhhCCCCCcHHHHHHHHcCCCCcccc
Q 003416 194 YLREVFKDP----TKKKVMHGADRDIVWLQRDFG---IYL-CNMFD--TGQ-ASRVLKLERNSLEYLLHHFCGVNANKEY 262 (821)
Q Consensus 194 ~L~eLLeDp----~IvKV~H~aK~DL~~L~rd~G---I~~-~nlFD--TqL-AAyLLg~~~~SLa~LvekyLgv~LdK~~ 262 (821)
.|..++.+- ..+.|+|++.+|+.+|.+.+. ..+ ...+| |.. .++.+.+. +. .|+..
T Consensus 87 ~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl~~l~~~~~p~---~~------~~i~~---- 153 (180)
T 2igi_A 87 ATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPE---IL------DGFTK---- 153 (180)
T ss_dssp HHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHCGG---GG------GGSCC----
T ss_pred HHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHHHHHHHHhChH---hh------hCCCC----
Confidence 344566541 346799999999999975432 111 22456 442 23322221 00 01110
Q ss_pred ccccccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 003416 263 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299 (821)
Q Consensus 263 Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eLe 299 (821)
....-|..||..+..|+..++..+.
T Consensus 154 ------------~~~H~Al~Da~ata~l~~~~~~~~~ 178 (180)
T 2igi_A 154 ------------QGTHQAMDDIRESVAELAYYREHFI 178 (180)
T ss_dssp ------------CCCCCHHHHHHHHHHHHHHHHHHTB
T ss_pred ------------cCCcCcHHHHHHHHHHHHHHHHHhh
Confidence 0113388999999999998877653
No 32
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=76.88 E-value=12 Score=37.46 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=51.2
Q ss_pred HHHHhhcCCCceEEEecc--------hhcHHH-HHH---HhCCCcC----ccchhH---HHHHhhCCCCCcHHHHHHHHc
Q 003416 194 YLREVFKDPTKKKVMHGA--------DRDIVW-LQR---DFGIYLC----NMFDTG---QASRVLKLERNSLEYLLHHFC 254 (821)
Q Consensus 194 ~L~eLLeDp~IvKV~H~a--------K~DL~~-L~r---d~GI~~~----nlFDTq---LAAyLLg~~~~SLa~LvekyL 254 (821)
.|..++.+.- .|+|++ .+|+.. |.+ .+|+... .++|++ -.++-+ .+.++|..|++ ++
T Consensus 110 ~f~~~l~~~~--lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~-~p~~~L~~l~~-~~ 185 (224)
T 2xri_A 110 RVDEWMAKEG--LLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGC-WPKNGLLDMNK-GL 185 (224)
T ss_dssp HHHHHHHHTT--TTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTS-CCTTTHHHHHH-HT
T ss_pred HHHHHHhhcc--cccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhcc-CCCCCHHHHHH-Hc
Confidence 3445665432 367888 999984 632 3566542 467843 333322 23589999987 45
Q ss_pred CCCCccccccccccCCCCCHHHHHHHHHhhHHHHHHHHHHHH
Q 003416 255 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 296 (821)
Q Consensus 255 gv~LdK~~Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~ 296 (821)
|+.... + ..-|..||..+..|+..|..
T Consensus 186 gi~~~~--~-------------~H~Al~DA~~ta~l~~~l~~ 212 (224)
T 2xri_A 186 SLQHIG--R-------------PHSGIDDCKNIANIMKTLAY 212 (224)
T ss_dssp TCCCCS--C-------------TTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC--C-------------CcChHHHHHHHHHHHHHHHH
Confidence 654321 0 12378899999999887653
No 33
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=76.21 E-value=6.3 Score=41.90 Aligned_cols=85 Identities=8% Similarity=-0.041 Sum_probs=51.4
Q ss_pred HHHhhcCCCceEEEecc------hhcH-HHHHH---HhCCCcC----ccchhHHHHH-hhCC-------CCCcHHHHHHH
Q 003416 195 LREVFKDPTKKKVMHGA------DRDI-VWLQR---DFGIYLC----NMFDTGQASR-VLKL-------ERNSLEYLLHH 252 (821)
Q Consensus 195 L~eLLeDp~IvKV~H~a------K~DL-~~L~r---d~GI~~~----nlFDTqLAAy-LLg~-------~~~SLa~Lvek 252 (821)
|..++.+..+ |.|++ .+|+ .+|.+ .+|+... .++||+..+. +++. +.++|..|++
T Consensus 102 f~~~l~~~~l--vahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~- 178 (308)
T 3cg7_A 102 FQQWLITLGL--EEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNE- 178 (308)
T ss_dssp HHHHHHHHCC--CTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHHH-
T ss_pred HHHHHHhCCc--CCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHHHHH-
Confidence 4445554222 44555 8998 56653 3566543 3689985544 3321 1578999995
Q ss_pred HcCCCCccccccccccCCCCCHHHHHHHHHhhHHHHHHHHHHHHH
Q 003416 253 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 297 (821)
Q Consensus 253 yLgv~LdK~~Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~e 297 (821)
++|+..... ..-|..||..+..|+..|..+
T Consensus 179 ~~gi~~~~~---------------~HrAl~DA~ata~l~~~l~~~ 208 (308)
T 3cg7_A 179 YYDLPTIGR---------------AHDAMDDCLNIATILQRMINM 208 (308)
T ss_dssp HTTCCCCSC---------------TTCHHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCCCC---------------CcCHHHHHHHHHHHHHHHHHc
Confidence 456654311 022788999999999887653
No 34
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=72.65 E-value=11 Score=41.05 Aligned_cols=89 Identities=13% Similarity=0.149 Sum_probs=58.8
Q ss_pred HHHHhhcCC-----CceEEEecchhcHH-HHHHH---hCCCc----CccchhHHHHH-hhCCCC--CcHHHHHHHHcCCC
Q 003416 194 YLREVFKDP-----TKKKVMHGADRDIV-WLQRD---FGIYL----CNMFDTGQASR-VLKLER--NSLEYLLHHFCGVN 257 (821)
Q Consensus 194 ~L~eLLeDp-----~IvKV~H~aK~DL~-~L~rd---~GI~~----~nlFDTqLAAy-LLg~~~--~SLa~LvekyLgv~ 257 (821)
.|..++.+. ..+.|+|++.+|+. +|.+. +|+.. ..++||+.... +++... ++|..|+++ +|+.
T Consensus 209 ~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~gi~ 287 (349)
T 1zbu_A 209 KVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LGMD 287 (349)
T ss_dssp HHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHH-TTCC
T ss_pred HHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHH-cCCC
Confidence 344566553 14679999999998 88653 45543 24789976543 445443 899999876 5665
Q ss_pred CccccccccccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003416 258 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 298 (821)
Q Consensus 258 LdK~~Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL 298 (821)
.... ..-|..||.++..||..|..+.
T Consensus 288 ~~g~---------------~HrAl~DA~ata~ll~~ll~~~ 313 (349)
T 1zbu_A 288 YDGR---------------PHCGLDDSKNIARIAVRMLQDG 313 (349)
T ss_dssp CCSC---------------TTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCC---------------CCCHHHHHHHHHHHHHHHHHhc
Confidence 4310 0227889999999998876543
No 35
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=64.26 E-value=40 Score=32.89 Aligned_cols=83 Identities=10% Similarity=0.091 Sum_probs=45.0
Q ss_pred HHHhhcCC----CceEEEecchhcHHHHHHHhCC---Cc-CccchhHHHHHhhCCCCCcHHHHHHHHcCCCCcccccccc
Q 003416 195 LREVFKDP----TKKKVMHGADRDIVWLQRDFGI---YL-CNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 266 (821)
Q Consensus 195 L~eLLeDp----~IvKV~H~aK~DL~~L~rd~GI---~~-~nlFDTqLAAyLLg~~~~SLa~LvekyLgv~LdK~~Q~SD 266 (821)
|..++.+. ....|+|++.+|+.+|.+.+.. .+ ...+|+. +|..|+++++.. +-+.
T Consensus 92 ~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~-----------~l~~l~~~~~p~-~~~~----- 154 (194)
T 2gbz_A 92 TVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVS-----------TIKELARRWAPA-VASG----- 154 (194)
T ss_dssp HHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHH-----------HHHHHHHHHCGG-GGTT-----
T ss_pred HHHHHHHhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHH-----------HHHHHHHHhCHH-HHhC-----
Confidence 44555542 1247999999999999754321 11 1233432 344455554321 0000
Q ss_pred ccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 003416 267 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299 (821)
Q Consensus 267 W~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eLe 299 (821)
++.....-|..||..+..|+..++..+.
T Consensus 155 -----i~~~~~H~Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 155 -----FAKSSAHTALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp -----CCCCSCCSHHHHHHHHHHHHHHHHTTSH
T ss_pred -----CCCCCCcccHHHHHHHHHHHHHHHHHhc
Confidence 0111123488899999999988765543
No 36
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=62.70 E-value=5.4 Score=49.34 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=67.2
Q ss_pred ceEEEecchhcHHHHHHHhCCCcCc--cchhHHHHHhhC-------------------------------------C---
Q 003416 204 KKKVMHGADRDIVWLQRDFGIYLCN--MFDTGQASRVLK-------------------------------------L--- 241 (821)
Q Consensus 204 IvKV~H~aK~DL~~L~rd~GI~~~n--lFDTqLAAyLLg-------------------------------------~--- 241 (821)
.+.|+||..+|..-+...|.+.... .+|||-.+.... +
T Consensus 195 rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSLHvavsG~~s~QR~~w~~~kk~k~~~~~e~~~~~~~~~~~~~~p~~~ 274 (1172)
T 3ikm_A 195 QLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAIS 274 (1172)
T ss_dssp CCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC-------------------------
T ss_pred cEEEeCCcchhHHHHHHHHhcccCCceeeechhhhhhccccchhhHHHHHHhhhhcccchhhHHHHhhhccccccCcccc
Confidence 4569999999997766777776643 669986533110 0
Q ss_pred -------C-CC--cHHHHHHHHcCC-CCccccccccccCCCCC------HHHHHHHHHhhHHHHHHHHHHHHHHhcC
Q 003416 242 -------E-RN--SLEYLLHHFCGV-NANKEYQNADWRVRPLP------DEMLRYAREDTHYLLYIYDIMKIKLSSM 301 (821)
Q Consensus 242 -------~-~~--SLa~LvekyLgv-~LdK~~Q~SDW~~RPLs------~eql~YAA~DA~yLL~Lyd~L~~eLee~ 301 (821)
. -. ||.++.+.|||+ .++|..+ ..|..-.+. .+.+.|+|.||..+..||..+.....++
T Consensus 275 ~~~W~~~sS~N~~SL~dV~~lhcg~~~ldK~~R-d~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P~F~er 350 (1172)
T 3ikm_A 275 SWDWLDISSVNSNSLAEVHRLYVGGPPLEKEPR-ELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLER 350 (1172)
T ss_dssp -CCCCCCCCTTSHHHHHHHTCSSCSCS--SCSS-SSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcccccCCCcCCHHHHHHHhCCCcccChhhH-hhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 0 14 788999999997 8888653 223222222 4678999999999999999999987764
No 37
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=61.10 E-value=20 Score=40.14 Aligned_cols=72 Identities=13% Similarity=0.074 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHhC---CCCHHHHHhhhcCChhHHHHhHHHHHHHHHH
Q 003416 350 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL---PTTAAKLRRLLKSKHSYIERYMGPVLSIIKN 421 (821)
Q Consensus 350 ~~qlavlraL~aWRD~iAR~~Dep~~~VL~D~~LleLA~~~---P~t~~eL~~l~g~~~~~vrr~g~eIL~iI~~ 421 (821)
+...++++.|..++..+|.+.++|+..|++.+.|..|+-.. +.+..++++..|...=..+-.++.|+.+|+.
T Consensus 360 ~~~~~~~~~l~~~~~~~a~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~l~~~g~~~Wr~~~~~~~~~~~~~~ 434 (440)
T 3cym_A 360 PERLQVLNRVRKAVSQIAEDTRTPVEIVIKPQYLRNLCWTDEPRKRDVARFLSEQGARDWQVSLVAESVSRAIEG 434 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHSCHHHHHHHHCSSCGGGCCHHHHHHHHTCCHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHcCCHHHHHHHhCcCCCChhhHhHHHhhccCCCchHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999999332 4456676666655444445668888877753
No 38
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=44.58 E-value=3.5 Score=35.03 Aligned_cols=57 Identities=9% Similarity=0.088 Sum_probs=41.8
Q ss_pred HHHHHHH---HHHHHhhhcccchhhccCchhhccccCCCCCCCc------cccccccccCCCcchhhhc
Q 003416 430 EVIAQKL---KEERMEVASEETEVLVLDTSSNLKIPNVGRESVD------GVDALVGTTMPHPPAYTQL 489 (821)
Q Consensus 430 ~al~elL---lk~~~e~~~va~~~lia~~~dl~~ia~~~~~~v~------al~gwr~~~fg~~~~a~~l 489 (821)
.++.+.| .+..|.+.+|+ +..|.+.+.|..||...+.+.. .+..|..+-|| +..|.+
T Consensus 5 ~~l~~~L~~wR~~~A~~~~vp-p~~I~~d~~L~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG--~~~l~~ 70 (77)
T 2rhf_A 5 ADLSEALRELRRELMKETGYS-AFVVFTNATLEALAARQPRTLAELAEVPGLGEKRIEAYG--ERILDA 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-HHHHCCHHHHHHHHHHCCCSHHHHTTSTTTCHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCC-cceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHH--HHHHHH
Confidence 4566666 88899999999 9999999999999998877643 34444444555 444443
No 39
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=39.82 E-value=2e+02 Score=33.13 Aligned_cols=132 Identities=9% Similarity=0.093 Sum_probs=73.9
Q ss_pred CCeeEEEeeecccccCCCcEEEEEEEeCC--ceEEEecCCcchhhhHHHHHhhcCCCceEEEecchhcHHHHHHH---hC
Q 003416 149 VDEFAVDLEHNQYRSFLGLTCLMQISTRT--EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRD---FG 223 (821)
Q Consensus 149 a~~IAVDtE~~~~rty~g~LcLIQISt~~--~~yLID~Lal~~~L~~~L~eLLeDp~IvKV~H~aK~DL~~L~rd---~G 223 (821)
...+++|+|... +...+.+..+.+.+.+ ..|..+- .+..++ .++.+-++..++||.++|...|.+. .|
T Consensus 6 ~~i~~~D~Et~~-d~~~~~~~~i~~~~~~~~~~~~~~~-----~l~~fi-~~~~~~~~~i~~hNl~FD~~~l~~~~~~~~ 78 (575)
T 2py5_A 6 RKMYSCAFETTT-KVEDCRVWAYGYMNIEDHSEYKIGN-----SLDEFM-AWVLKVQADLYFHNLKFAGAFIINWLERNG 78 (575)
T ss_dssp CCEEEEEEEECC-BTTBCCEEEEEEEESSCTTCEEEES-----CHHHHH-HHHHHHCCEEEETTHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEEEeec-CCCCCceEEEEEEeCCceEEEEech-----hHHHHH-HHHHHcCCEEEEEChhhhHHHHHHHHHHhC
Confidence 357899999843 2333445555555542 2344332 233333 3444444567889999999887543 22
Q ss_pred -------C--C----c-Cc--c--chhH--------------HHHHhhCCCCCcHHHHHHHHcCCCCccc---cc---cc
Q 003416 224 -------I--Y----L-CN--M--FDTG--------------QASRVLKLERNSLEYLLHHFCGVNANKE---YQ---NA 265 (821)
Q Consensus 224 -------I--~----~-~n--l--FDTq--------------LAAyLLg~~~~SLa~LvekyLgv~LdK~---~Q---~S 265 (821)
+ . + .+ + ++.. -...++ ..||+.+++.+... ..|+ +. ..
T Consensus 79 ~~~~~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~Ds~~~~---~~SL~~~a~~f~~~-~~K~~~py~~~~~~ 154 (575)
T 2py5_A 79 FKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDSLKKL---PFPVKKIAKDFKLT-VLKGDIDYHKERPV 154 (575)
T ss_dssp CEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEHHHHS---CSCHHHHHHHTTCC-CCSSCCCTTSCCCT
T ss_pred cccccccccccccceeccCCeEEEEEEEEecCCCceEEEEEEEhHhhh---hhhHHHHHHHhCCc-ccCCccCccccCcc
Confidence 1 0 1 01 0 0111 111112 36999998877542 2232 11 12
Q ss_pred cccCCCCCHHHHHHHHHhhHHHHHHHHHH
Q 003416 266 DWRVRPLPDEMLRYAREDTHYLLYIYDIM 294 (821)
Q Consensus 266 DW~~RPLs~eql~YAA~DA~yLL~Lyd~L 294 (821)
+| -+.++.+.|+..||..|..++..+
T Consensus 155 ~~---~~~~~~~~Y~~~Dv~ll~~i~~~~ 180 (575)
T 2py5_A 155 GY---KITPEEYAYIKNDIQIIAEALLIQ 180 (575)
T ss_dssp TC---CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 23 366889999999999999988765
No 40
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=38.83 E-value=2.1e+02 Score=34.56 Aligned_cols=99 Identities=9% Similarity=0.108 Sum_probs=60.8
Q ss_pred hhhHHHHHhhcCCCceEEEecc-hhcHHHHHHH---hCCC-------c----------CccchhHHHH-------HhhC-
Q 003416 190 QVGPYLREVFKDPTKKKVMHGA-DRDIVWLQRD---FGIY-------L----------CNMFDTGQAS-------RVLK- 240 (821)
Q Consensus 190 ~L~~~L~eLLeDp~IvKV~H~a-K~DL~~L~rd---~GI~-------~----------~nlFDTqLAA-------yLLg- 240 (821)
++...+..++.+.. +-|+||. .+|+..|... +|+. + ...+|++... |..+
T Consensus 259 ~LL~~f~~~i~~~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~ 337 (847)
T 1s5j_A 259 ELLGRFFDILLEYP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEG 337 (847)
T ss_dssp HHHHHHHHHHTTCS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTT
T ss_pred HHHHHHHHHhccCC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhcccc
Confidence 35556667888876 5788887 5799887543 4442 1 1145766432 1111
Q ss_pred -CCCCcHHHHHHHHcCCCCccccccccccCCCCCHHHHHHHHHhhHHHHHHHH
Q 003416 241 -LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 292 (821)
Q Consensus 241 -~~~~SLa~LvekyLgv~LdK~~Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd 292 (821)
..+++|..+++.+||..-. .-...|.. .-....+.|...||..++.|+.
T Consensus 338 kl~sysL~~Va~~~Lg~~K~--dv~~~i~~-~~~~~l~~Ycl~Da~lt~~L~~ 387 (847)
T 1s5j_A 338 KYNEYNLDAVAKALLGTSKV--KVDTLISF-LDVEKLIEYNFRDAEITLQLTT 387 (847)
T ss_dssp CCSSCSHHHHHHHHHCCCCC----SSCTTT-CCHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccHHHHHHHHhCCCCc--chhHhhhh-ccHHHHHHHHHHHHHHHHHHHH
Confidence 2368999999999996421 10112221 1125678999999999998853
No 41
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=36.50 E-value=63 Score=34.26 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=57.8
Q ss_pred cCCCceEEEecchhcHHHHHHHh-CCC---------------cCccchhHHHHHhhCCCCCcHHHHHHHHcCCCCccccc
Q 003416 200 KDPTKKKVMHGADRDIVWLQRDF-GIY---------------LCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 263 (821)
Q Consensus 200 eDp~IvKV~H~aK~DL~~L~rd~-GI~---------------~~nlFDTqLAAyLLg~~~~SLa~LvekyLgv~LdK~~Q 263 (821)
-++++.+|.|....|+-.|.+.+ |-. ...++||...+..+..-.-||.+|++. |++.-
T Consensus 147 l~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l~ggL~~lA~~-L~v~r----- 220 (285)
T 4gmj_B 147 LCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQ-LELER----- 220 (285)
T ss_dssp SCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTCCSCHHHHHHH-TTCCC-----
T ss_pred hcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhccccCChHHHHHHh-CCCCC-----
Confidence 46788998877778886554322 211 134789998888776545689999876 44421
Q ss_pred cccccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHhc
Q 003416 264 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300 (821)
Q Consensus 264 ~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eLee 300 (821)
.-|. .=|..|+..+..+|-.|++.+-+
T Consensus 221 -----~g~~-----HqAGsDSllT~~~F~kl~~~~f~ 247 (285)
T 4gmj_B 221 -----IGPQ-----HQAGSDSLLTGMAFFKMREMFFE 247 (285)
T ss_dssp -----CSCT-----TSHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----CCCC-----CcchhHHHHHHHHHHHHHHHHhc
Confidence 1111 12889999999999999988764
No 42
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=31.59 E-value=63 Score=36.04 Aligned_cols=99 Identities=17% Similarity=0.082 Sum_probs=60.3
Q ss_pred HhhcCCCceEEEecchhcHHHHHHHhCCC-c--------------CccchhHHHHHhhCC----CCCcHHHHHHHHcCCC
Q 003416 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIY-L--------------CNMFDTGQASRVLKL----ERNSLEYLLHHFCGVN 257 (821)
Q Consensus 197 eLLeDp~IvKV~H~aK~DL~~L~rd~GI~-~--------------~nlFDTqLAAyLLg~----~~~SLa~LvekyLgv~ 257 (821)
+.+...+.+.|+||+-.|+..+++.|--. | ..++||.+.+..... ...+|..|...+....
T Consensus 275 ~~L~~s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~~~ 354 (430)
T 2a1r_A 275 HAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETP 354 (430)
T ss_dssp HHHHHHCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTTCSCCSHHHHHHHTTSTT
T ss_pred HHHHhCCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhccchhhccCCCCHHHHHHHHHhCC
Confidence 34444456679999999998776654322 2 347899988765432 2468999877653221
Q ss_pred C-------ccccccccccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHhc
Q 003416 258 A-------NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 300 (821)
Q Consensus 258 L-------dK~~Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eLee 300 (821)
. +.+...-+. ..++..-|+-|++.+-.++-.|...|..
T Consensus 355 ~~~p~i~~~~~~~~y~~-----~~~~~HeAGyDa~mTG~vFi~l~~~l~~ 399 (430)
T 2a1r_A 355 FNPPKVESAEGFPSYDT-----ASEQLHEAGYDAYITGLCFISMANYLGS 399 (430)
T ss_dssp CCCCCEEECTTCCCC----------CCCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCCCeeecCCCcccccc-----CCCCccchHHHHHHHHHHHHHHHHHHhh
Confidence 1 111111110 1233345888999999999999888854
No 43
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=29.17 E-value=65 Score=36.66 Aligned_cols=100 Identities=18% Similarity=0.090 Sum_probs=62.0
Q ss_pred HhhcCCCceEEEecchhcHHHHHHHhCCCc---------------CccchhHHHHHhhC----CCCCcHHHHHHHHcCCC
Q 003416 197 EVFKDPTKKKVMHGADRDIVWLQRDFGIYL---------------CNMFDTGQASRVLK----LERNSLEYLLHHFCGVN 257 (821)
Q Consensus 197 eLLeDp~IvKV~H~aK~DL~~L~rd~GI~~---------------~nlFDTqLAAyLLg----~~~~SLa~LvekyLgv~ 257 (821)
+.+...+++.|+|++-.|+..|++.|--.+ ..++||-..+.... .+..+|..|.+.+-...
T Consensus 270 ~~L~~~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~ 349 (507)
T 3d45_A 270 HAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETP 349 (507)
T ss_dssp HHHHHHCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTT
T ss_pred HHHHhCCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHHHHHHHhccC
Confidence 444455788999999999988876653221 24789998776422 12578999988764211
Q ss_pred --Ccc---ccccccccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 003416 258 --ANK---EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299 (821)
Q Consensus 258 --LdK---~~Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eLe 299 (821)
... ..+...|.. ......=|+.|+..+-.++-.|...|.
T Consensus 350 ~~~p~i~~~~~~~~y~~---~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 350 FDPPKVESAEGFPSYDT---ASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp CCCCCEEECTTSCCCC-------CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEeccccccccc---CCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 111 001111110 112234489999999999999998886
No 44
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=27.79 E-value=1e+02 Score=32.14 Aligned_cols=85 Identities=12% Similarity=0.075 Sum_probs=57.3
Q ss_pred hcCCCceEEEecchhcHHHHHHH-hCC---------------CcCccchhHHHHHhhCCCCCcHHHHHHHHcCCCCcccc
Q 003416 199 FKDPTKKKVMHGADRDIVWLQRD-FGI---------------YLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 262 (821)
Q Consensus 199 LeDp~IvKV~H~aK~DL~~L~rd-~GI---------------~~~nlFDTqLAAyLLg~~~~SLa~LvekyLgv~LdK~~ 262 (821)
..+++|.+|.|....|+-.|.+- .|- +...++||...+..+..-.-||.+|++.+ ++.-
T Consensus 136 vl~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~gL~~la~~L-~v~r---- 210 (252)
T 2d5r_A 136 VLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQL-ELER---- 210 (252)
T ss_dssp SSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTTCCSSHHHHHHHH-TCCC----
T ss_pred ccCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhcccCCCHHHHHHHc-CCCc----
Confidence 44567899988888887554332 111 12357899988888753357899998875 4321
Q ss_pred ccccccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 003416 263 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 299 (821)
Q Consensus 263 Q~SDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eLe 299 (821)
.-+ ..-|+.|+..+..+|-.|+..+-
T Consensus 211 ------~g~-----~HqAGsDsllT~~~F~km~~~~f 236 (252)
T 2d5r_A 211 ------IGP-----QHQAGSDSLLTGMAFFKMREMFF 236 (252)
T ss_dssp ------CSS-----TTSHHHHHHHHHHHHHHHHHHTS
T ss_pred ------cCc-----ccchhhhHHHHHHHHHHHHHHhc
Confidence 011 12288999999999999987765
No 45
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=26.56 E-value=51 Score=30.03 Aligned_cols=42 Identities=21% Similarity=0.407 Sum_probs=35.7
Q ss_pred cCHHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhHHHHHHHHHH
Q 003416 378 LPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKN 421 (821)
Q Consensus 378 L~D~~LleLA~~~P~t~~eL~~l~g~~~~~vrr~g~eIL~iI~~ 421 (821)
|+...++.||.-+|.|.+++..+...... ...+++||++|.+
T Consensus 64 l~e~~a~~I~nl~P~t~dElraii~~~~~--~eel~~ILd~l~k 105 (107)
T 1go3_F 64 IDEKTAVKIADILPEDLDDLRAIYYKREL--PENAEEILEIVRK 105 (107)
T ss_dssp CCHHHHHHHHHHCCCSHHHHHHHSTTSCC--CTTHHHHHHHHTT
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHhcccC--cHHHHHHHHHHHH
Confidence 89999999999999999999999765543 7788888888764
No 46
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=25.80 E-value=12 Score=32.28 Aligned_cols=58 Identities=10% Similarity=-0.075 Sum_probs=42.5
Q ss_pred HHHHHH---HHHHHhhhcccchhhccCchhhccccCCCCCCCcc------ccccccccCCCcchhhhccC
Q 003416 431 VIAQKL---KEERMEVASEETEVLVLDTSSNLKIPNVGRESVDG------VDALVGTTMPHPPAYTQLKQ 491 (821)
Q Consensus 431 al~elL---lk~~~e~~~va~~~lia~~~dl~~ia~~~~~~v~a------l~gwr~~~fg~~~~a~~l~~ 491 (821)
.+.+.| .+..|.+.+|+ +..|.+...|..||.-.+.+... +..+..+-|| +..|.+.+
T Consensus 8 ~l~~~L~~wR~~~A~~~~vp-~~~If~d~tL~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG--~~~l~~i~ 74 (85)
T 2kv2_A 8 KCLGELTEVCKSLGKVFGVH-YFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYG--AEVISVLQ 74 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTSC-HHHHCCHHHHHHHHHHCCSCHHHHHTSSSCCHHHHHHTH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC-cceeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHH--HHHHHHHH
Confidence 344445 88889999999 99999999999999988877543 3334455566 66665543
No 47
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=22.34 E-value=71 Score=34.77 Aligned_cols=64 Identities=16% Similarity=0.068 Sum_probs=44.0
Q ss_pred cchhHHHHHhh--C-CCCCcHHHHHHHHcCCC-Ccccccccc-ccCCCCCHHHHHHHHHhhHHHHHHHHHH
Q 003416 229 MFDTGQASRVL--K-LERNSLEYLLHHFCGVN-ANKEYQNAD-WRVRPLPDEMLRYAREDTHYLLYIYDIM 294 (821)
Q Consensus 229 lFDTqLAAyLL--g-~~~~SLa~LvekyLgv~-LdK~~Q~SD-W~~RPLs~eql~YAA~DA~yLL~Lyd~L 294 (821)
++|+..+++-+ . ..+++|..+++++||.. .+-..+... |.. . ....+.|+..||...+.|+..+
T Consensus 267 ~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~d~~~~i~~~~~~-~-~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 267 ILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRET-N-HQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp ECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHHH-H-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCCCcHHHHHHHHHh-C-HHHHHHHHHHHHHHHHHHHHHH
Confidence 67988887763 3 45799999999999863 221122222 331 1 1567899999999999998863
No 48
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=22.01 E-value=52 Score=35.58 Aligned_cols=41 Identities=5% Similarity=0.006 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHhC
Q 003416 350 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 390 (821)
Q Consensus 350 ~~qlavlraL~aWRD~iAR~~Dep~~~VL~D~~LleLA~~~ 390 (821)
+...++++.|..|+..+|.+.++|+..|++.+.|..|+...
T Consensus 301 ~~~~~~~~~l~~~~~~~a~~~~~~~~~l~~~~~l~~l~~~~ 341 (375)
T 1yt3_A 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWH 341 (375)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHcCCHHHHHHHHhhc
Confidence 56678999999999999999999999999999999999753
No 49
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=21.30 E-value=18 Score=32.60 Aligned_cols=58 Identities=10% Similarity=-0.075 Sum_probs=42.1
Q ss_pred HHHHHH---HHHHHhhhcccchhhccCchhhccccCCCCCCCcc------ccccccccCCCcchhhhccC
Q 003416 431 VIAQKL---KEERMEVASEETEVLVLDTSSNLKIPNVGRESVDG------VDALVGTTMPHPPAYTQLKQ 491 (821)
Q Consensus 431 al~elL---lk~~~e~~~va~~~lia~~~dl~~ia~~~~~~v~a------l~gwr~~~fg~~~~a~~l~~ 491 (821)
++.+.| .+..|.+.+|+ +..|.+...|..||.-.+.+... +..+..+-|| +..|.+.+
T Consensus 23 ~l~~~L~~wR~~~A~~~~vP-~~~If~D~tL~eiA~~~P~t~~eL~~I~Gvg~~k~~~yG--~~~L~~I~ 89 (101)
T 2rrd_A 23 KCLGELTEVCKSLGKVFGVH-YFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYG--AEVISVLQ 89 (101)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-HHHHCCHHHHHHHHHHCCCCHHHHHTSTTCCHHHHHHTH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC-CCeeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHH--HHHHHHHH
Confidence 344444 78889999999 99999999999999988877433 3333455567 66665543
No 50
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=21.05 E-value=28 Score=31.48 Aligned_cols=44 Identities=11% Similarity=0.193 Sum_probs=35.9
Q ss_pred HHHHHHH---HHHHHhhhcccchhhccCchhhccccCCCCCCCccccc
Q 003416 430 EVIAQKL---KEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDA 474 (821)
Q Consensus 430 ~al~elL---lk~~~e~~~va~~~lia~~~dl~~ia~~~~~~v~al~g 474 (821)
.++.+.| ++..|++.+|+ +.+|.+...|..||.-.+.+...|..
T Consensus 15 ~~l~~~L~~wR~~~A~~~~vP-~y~If~D~tL~emA~~~P~t~~eL~~ 61 (103)
T 2e1f_A 15 IVLYGKLVEARQKHANKMDVP-PAILATNKILVDMAKMRPTTVENVKR 61 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTSC-HHHHCCHHHHHHHHHHCCCSHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCC-CCeeECHHHHHHHHHhCCCCHHHHhc
Confidence 4455555 88899999999 99999999999999998887554443
Done!