BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003417
(821 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/729 (57%), Positives = 533/729 (73%), Gaps = 23/729 (3%)
Query: 97 SNEIKERVHAIKSMLGSMEDGEISVSAYDTAWVALVEDIQGSGAPQFPSSLHWIANSQLP 156
SN KE V ++K++L ++ DGEI++SAYDTAWVAL++ G P FPS++ WIA +QL
Sbjct: 8 SNAFKEAVKSVKTILRNLTDGEITISAYDTAWVALID--AGDKTPAFPSAVKWIAENQLS 65
Query: 157 DGSWGDHLLFSAHDRLINTLACVVALRSWNIHHDKCHKGLLFFKENISKLENENDEHMPI 216
DGSWGD LFS HDRLINTLACVVALRSWN+ +C+KG+ FF+ENI KLE+ENDEHMPI
Sbjct: 66 DGSWGDAYLFSYHDRLINTLACVVALRSWNLFPHQCNKGITFFRENIGKLEDENDEHMPI 125
Query: 217 GFEVAFPSLLEIARSLDIEVPYDSPVLQKIYDKRNLKLTRIPKDIMHNVPTTLLHSLEGM 276
GFEVAFPSLLEIAR ++I+VPYDSPVL+ IY K+ LKLTRIPK+IMH +PTTLLHSLEGM
Sbjct: 126 GFEVAFPSLLEIARGINIDVPYDSPVLKDIYAKKELKLTRIPKEIMHKIPTTLLHSLEGM 185
Query: 277 PDLNWQKLLKLQCQDGSFLFSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVPNVYPVDI 336
DL+W+KLLKLQ QDGSFLFSPSSTA+A MQT+D NCL+YL AV+RFNGGVPNV+PVD+
Sbjct: 186 RDLDWEKLLKLQSQDGSFLFSPSSTAFAFMQTRDSNCLEYLRNAVKRFNGGVPNVFPVDL 245
Query: 337 FEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLL 396
FEH+W VDRLQRLGISRYF+ EIKECLDYV+RYWT+ GICWAR + VQD+DDT+M FRLL
Sbjct: 246 FEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLL 305
Query: 397 RLHGYDVSAEAFEHFEKGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSA 456
R HGY VSA+ F++FEK GEFFCFVGQS QAVTG++NLYRASQ+ FP E+IL +AK+FS
Sbjct: 306 RQHGYQVSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSY 365
Query: 457 KY-LKAKTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGK 515
Y L+ + +L+DKWII KDLPGE+ FA+E+PWYA LPR+ETR YI+QYGGE+DVWIGK
Sbjct: 366 NYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGK 425
Query: 516 TLYRMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKLDKFGITRRALLLAYFV 575
TLYRMPYVNN+ YLELAK DYNNCQA H+ EWD QKWY +L ++G+ R LL Y++
Sbjct: 426 TLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLSEWGVRRSELLECYYL 485
Query: 576 ASASIYEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREF-RNCISAWDYIN 634
A+A+I+E R ER+ WAK++VLV+ I+S F + DS + E+ N + + N
Sbjct: 486 AAATIFESERSHERMVWAKSSVLVKAISSSFGESSDSRRSFSDQFHEYIANARRSDHHFN 545
Query: 635 RRRWDSNKKG----ERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLTTWQDDG 690
R ++ G R AG L+GTLN ++ D +++GRD+ L +W W+ W+ G
Sbjct: 546 DRNMRLDRPGSVQASRLAG-VLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYG 604
Query: 691 NSHWGVAELLVQTINLSAGRLLSEELLCHPEYARLSYLTNRICHTLGHYHKQKVQVXXXX 750
+ G EL+V+ I L L+ H + RL+ + NRIC + ++
Sbjct: 605 DE--GEGELMVKMIILMKNNDLT-NFFTHTHFVRLAEIINRICLPRQYLKARR------- 654
Query: 751 XXXXXXXTALSVEPDMQELVQLVLQNSSSGIGSDVKQTFLTVAKSFYYCAYCDAETINSH 810
T S+E +M ++V+L L S S DV TFL VAK+FYY A C + + +H
Sbjct: 655 -NDEKEKTIKSMEKEMGKMVELAL--SESDTFRDVSITFLDVAKAFYYFALC-GDHLQTH 710
Query: 811 IGKVLFQTV 819
I KVLFQ V
Sbjct: 711 ISKVLFQKV 719
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 518 bits (1335), Expect = e-147, Method: Compositional matrix adjust.
Identities = 271/679 (39%), Positives = 402/679 (59%), Gaps = 35/679 (5%)
Query: 93 KVCASNE--IKERVHAIKSMLGSMEDGEISVSAYDTAWVALVEDIQGSGAPQFPSSLHWI 150
KV AS+E I+ + IK+M M GE + SAYDTAWVA + + GS P FP ++ WI
Sbjct: 24 KVAASDEKRIETLISEIKNMFRCMGYGETNPSAYDTAWVARIPAVDGSDNPHFPETVEWI 83
Query: 151 ANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIHHDKCHKGLLFFKENISKLENEN 210
+QL DGSWG+ F A+DR++ TLAC++ L W + KG+ FF+ K+E+E
Sbjct: 84 LQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTGETQVQKGIEFFRTQAGKMEDEA 143
Query: 211 DEHMPIGFEVAFPSLLEIARSLDIEVPYDSPVLQKIYDKRNLKLTRIPKDIMHNVPTTLL 270
D H P GFE+ FP++L+ A+ L +++PYD P L++I +KR KL RIP D+++ +PTTLL
Sbjct: 144 DSHRPSGFEIVFPAMLKEAKILGLDLPYDLPFLKQIIEKREAKLKRIPTDVLYALPTTLL 203
Query: 271 HSLEGMPDL-NWQKLLKLQCQDGSFLFSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVP 329
+SLEG+ ++ +WQK++KLQ +DGSFL SP+STA M+T ++ CL +L +++F VP
Sbjct: 204 YSLEGLQEIVDWQKIMKLQSKDGSFLSSPASTAAVFMRTGNKKCLDFLNFVLKKFGNHVP 263
Query: 330 NVYPVDIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDT 389
YP+D+FE LWAVD ++RLGI R+F+ EIKE LDYVY +W E GI WAR V D+DDT
Sbjct: 264 CHYPLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDT 323
Query: 390 SMGFRLLRLHGYDVSAEAFEHF-EKGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKIL 448
+MG R+LRLHGY+VS++ + F ++ GEFFCF+GQ+ + VT + N+ R S V FPGE I+
Sbjct: 324 AMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIM 383
Query: 449 GHAKQFSAKYLK-AKTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGG 507
AK + +YL+ A D DKW K++ GEV +A++ PW+ +PRLE R YIE Y G
Sbjct: 384 EEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENY-G 442
Query: 508 EDDVWIGKTLYRMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKLDKFGITRR 567
DDVW+GKT+Y MPY++N+ YLELAKLD+N Q++H+TE L++W+ + TR
Sbjct: 443 PDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFTDLNFTRE 502
Query: 568 ALLLAYFVASASIYEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCI 627
+ YF ++ I+EP + R + KT+ + +D ++ F +
Sbjct: 503 RVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDD-----LKLFTESV 557
Query: 628 SAWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLTTWQ 687
WD D + + T N IA + GRD+ G ++ W+ L +
Sbjct: 558 KRWDL---SLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYT 614
Query: 688 DDG----------------NSHWGVAELLVQTIN-LSAGRLLSEELLC----HPEYARLS 726
+ N+ +A V I+ L G +L++E+L + +L
Sbjct: 615 KEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLM 674
Query: 727 YLTNRICHTLGHYHKQKVQ 745
LT R+ + Y ++ Q
Sbjct: 675 GLTGRLVNDTKTYQAERGQ 693
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 427 bits (1097), Expect = e-119, Method: Compositional matrix adjust.
Identities = 247/676 (36%), Positives = 372/676 (55%), Gaps = 45/676 (6%)
Query: 104 VHAIKSMLGS--MEDGE--ISVSAYDTAWVALVEDIQGSGAPQFPSSLHWIANSQLPDGS 159
V IK+ML DGE I+ SAYDTAWVA V I GS PQFP ++ WI +QL DGS
Sbjct: 60 VSEIKAMLNPAITGDGESMITPSAYDTAWVARVPAIDGSARPQFPQTVDWILKNQLKDGS 119
Query: 160 WGDHLLFSAHDRLINTLACVVALRSWNIHHDKCHKGLLFFKENISKLENENDE-HMPIGF 218
WG F DRL+ TL+CV+ L WN+ + +G+ F K N+ +++E D+ + F
Sbjct: 120 WGIQSHFLLSDRLLATLSCVLVLLKWNVGDLQVEQGIEFIKSNLELVKDETDQDSLVTDF 179
Query: 219 EVAFPSLLEIARSLDIEVPYDSPVLQKIYDKRNLKLTRIPKDIMHNVPTTLLHSLEGMPD 278
E+ FPSLL A+SL + +PYD P + + KR +L ++ ++ ++ VP+ LL+SLEG+ D
Sbjct: 180 EIIFPSLLREAQSLRLGLPYDLPYIHLLQTKRQERLAKLSREEIYAVPSPLLYSLEGIQD 239
Query: 279 L-NWQKLLKLQCQDGSFLFSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVPNVYPVDIF 337
+ W++++++Q QDGSFL SP+STA M T D CL++L + +F VP +YPVD+
Sbjct: 240 IVEWERIMEVQSQDGSFLSSPASTACVFMHTGDAKCLEFLNSVMIKFGNFVPCLYPVDLL 299
Query: 338 EHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLR 397
E L VD + RLGI R+F+ EIKE LDYVYR+W E GI W R + DL+ T++GFRLLR
Sbjct: 300 ERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLR 359
Query: 398 LHGYDVSAEAFEHF-EKGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSA 456
LH Y+VS F++F + G+F C GQ + V + NLYRASQ+ FPGE IL AK F+
Sbjct: 360 LHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFAT 419
Query: 457 KYLK-AKTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGK 515
KYL+ A ++ W ++L E+ +A++ W+A +PR+E + Y + Y D I K
Sbjct: 420 KYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVY-RPDYARIAK 478
Query: 516 TLYRMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKLDKFGITRRALLLAYFV 575
+Y++PYVNN+ +LEL KLD+N Q++H+ E ++ W+ L F R L YF+
Sbjct: 479 CVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPLFTFARERPLEFYFL 538
Query: 576 ASASIYEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWDYINR 635
+A YEP + R + K A L + +D + ++ F + WD
Sbjct: 539 VAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDE-----LKLFTEAVRRWDLSFT 593
Query: 636 RRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLTTWQDDGNSHWG 695
K + ++ +A +A GR++ R+ WE +L + ++ + W
Sbjct: 594 ENLPDYMK---LCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEE--AEWL 648
Query: 696 VAE--------------------LLVQTINLSAGRLLSEELLCHPEY------ARLSYLT 729
AE LL+ + + G+LLS+E L +Y L+ L
Sbjct: 649 AAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLI 708
Query: 730 NRICHTLGHYHKQKVQ 745
+R+ Y +K +
Sbjct: 709 SRLADDTKTYKAEKAR 724
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 402 bits (1034), Expect = e-112, Method: Compositional matrix adjust.
Identities = 224/597 (37%), Positives = 339/597 (56%), Gaps = 38/597 (6%)
Query: 102 ERVHAIKSMLGSMEDGEISVSAYDTAWVALVEDIQ--GSGAPQFPSSLHWIANSQLPDGS 159
E V IK M ++ DG+IS SAYDTAWVA + I GS P+FP +L+W+ N+QL DGS
Sbjct: 12 ELVVKIKDMFNALGDGDISPSAYDTAWVARLATISSDGSEKPRFPQALNWVFNNQLQDGS 71
Query: 160 WGDHLLFSAHDRLINTLACVVALRSWNIHHDKCHKGLLFFKENISKLENENDEHMPIGFE 219
WG FS DRL+NT V+AL W H + +G F EN+ +L NE DE P F+
Sbjct: 72 WGIESHFSLCDRLLNTTNSVIALSVWKTGHSQVQQGAEFIAENL-RLLNEEDELSP-DFQ 129
Query: 220 VAFPSLLEIARSLDIEVPYDSPVLQKIYDKRNLKLTRIPKDIMHNVPTTLLHSLEGMPD- 278
+ FP+LL+ A++L I +PYD P ++ + R +LT + N+P +L++LEG+ +
Sbjct: 130 IIFPALLQKAKALGINLPYDLPFIKYLSTTREARLTDVSA-AADNIPANMLNALEGLEEV 188
Query: 279 LNWQKLLKLQCQDGSFLFSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVPNVYPVDIFE 338
++W K+++ Q +DGSFL SP+STA LM T DE C +L + +F G VP +Y +D+ E
Sbjct: 189 IDWNKIMRFQSKDGSFLSSPASTACVLMNTGDEKCFTFLNNLLDKFGGCVPCMYSIDLLE 248
Query: 339 HLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRL 398
L VD ++ LGI R+F+ EIK LDYVYR+W+E GI W R++ V DL+ T++G R LR+
Sbjct: 249 RLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRM 308
Query: 399 HGYDVSAEAFEHF-EKGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSAK 457
HGY+VS++ +F ++ G FF GQ+ + V NL+RAS + FP E+ + A++F+
Sbjct: 309 HGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEP 368
Query: 458 YLKAKTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGKTL 517
YL+ A + + K E+ + +E PW+ +PRLE R YI+ Y ++ VW KTL
Sbjct: 369 YLREALATKISTNTKLFK----EIEYVVEYPWHMSIPRLEARSYIDSY-DDNYVWQRKTL 423
Query: 518 YRMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKLDKFGITRRALLLAYFVAS 577
YRMP ++N LELAKLD+N Q++H+ E L +W+ + TR + YF S
Sbjct: 424 YRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMADINFTRHRVAEVYF--S 481
Query: 578 ASIYEPARWQERIAWAKTAVLVETITSYFDKQKD---SCKQRRAFVREFRNCISAWDYIN 634
++ +EP RIA+ K L FD D + + ++F
Sbjct: 482 SATFEPEYSATRIAFTKIGCL----QVLFDDMADIFATLDELKSFTE------------G 525
Query: 635 RRRWDSNKKGE-----RFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLTTW 686
+RWD++ E + K + + D + GRD+ ++R+ WE + +
Sbjct: 526 VKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCY 582
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 39/291 (13%)
Query: 343 VDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYD 402
+D ++RLGIS +F+ EI + LD +Y +N+ DL +++ FRLLR HG++
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYN----------QNSNCNDLCTSALQFRLLRQHGFN 120
Query: 403 VSAEAFEHFE-KGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSAKYLKA 461
+S E F F+ + G+F + V G+ NLY AS V + IL A FS +L++
Sbjct: 121 ISPEIFSKFQDENGKFKESLASD---VLGLLNLYEASHVRTHADDILEDALAFSTIHLES 177
Query: 462 KTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGKTLYRMP 521
+ L +V A+E + +PR+ETR +I ++Y
Sbjct: 178 AAPH-------LKSPLREQVTHALEQCLHKGVPRVETRFFI------------SSIYDKE 218
Query: 522 YVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACK-LDKFGITRRALLLAYFVASASI 580
N+V L AKLD+N Q +H+ E + +W+ + R ++ YF A
Sbjct: 219 QSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVY 278
Query: 581 YEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWD 631
+EP Q R+ KT ++ + FD + K+ A+ + I WD
Sbjct: 279 FEPQYSQARVMLVKTISMISIVDDTFDAYG-TVKELEAYT----DAIQRWD 324
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 39/291 (13%)
Query: 343 VDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYD 402
+D ++RLGIS +F+ EI + LD +Y +N+ DL +++ FRLLR HG++
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYN----------QNSNCNDLCTSALQFRLLRQHGFN 120
Query: 403 VSAEAFEHFE-KGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSAKYLKA 461
+S E F F+ + G+F + V G+ NLY AS V + IL A FS +L++
Sbjct: 121 ISPEIFSKFQDENGKFKESLASD---VLGLLNLYEASHVRTHADDILEDALAFSTIHLES 177
Query: 462 KTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGKTLYRMP 521
+ L +V A+E + +PR+ETR +I ++Y
Sbjct: 178 AAPH-------LKSPLREQVTHALEQCLHKGVPRVETRFFI------------SSIYDKE 218
Query: 522 YVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACK-LDKFGITRRALLLAYFVASASI 580
N+V L AKLD+N Q +H+ E + +W+ + R ++ YF A
Sbjct: 219 QSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVY 278
Query: 581 YEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWD 631
+EP Q R+ KT ++ + FD + K+ A+ + I WD
Sbjct: 279 FEPQYSQARVMLVKTISMISIVDDTFDAYG-TVKELEAYT----DAIQRWD 324
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 154/344 (44%), Gaps = 48/344 (13%)
Query: 343 VDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYD 402
+D +QRLG+ F+ +I+ LD R+ + G T L T++ FRLLR HG++
Sbjct: 71 IDNVQRLGLGYRFESDIRRALD---RFVSSGGFDGVTKT---SLHATALSFRLLRQHGFE 124
Query: 403 VSAEAFEHF-EKGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSAKYLKA 461
VS EAF F ++ G F + + T+A + +LY AS + GE IL A+ F+ +LK
Sbjct: 125 VSQEAFSGFKDQNGNFLENLKEDTKA---ILSLYEASFLALEGENILDEARVFAISHLKE 181
Query: 462 KTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGKTLYRMP 521
L + I K+L +V A+E+P + RLE IE Y ++D
Sbjct: 182 ------LSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDA---------- 225
Query: 522 YVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKL-DKFGITRRALLLAYFVASASI 580
N V LELA LDYN Q+V++ + +W+ L K R L+ +++ A
Sbjct: 226 ---NQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVA 282
Query: 581 YEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWDYINRRRWDS 640
+EP R + AK V I +D + + F + + RWD
Sbjct: 283 FEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDE-----LELFTDAVE--------RWDV 329
Query: 641 NKKGE-----RFAGKTLLGTLNHIALDALVANGRDIGGNLREAW 679
N + + L T+N IA D L G +I L +AW
Sbjct: 330 NAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAW 373
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 39/291 (13%)
Query: 343 VDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYD 402
+D ++RLGIS +F+ EI E LD +Y +N+ DL +++ FRLLR HG++
Sbjct: 71 IDIIERLGISYHFEKEIDEILDQIYN----------QNSNCNDLCTSALQFRLLRQHGFN 120
Query: 403 VSAEAFEHFE-KGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSAKYLKA 461
+S E F F+ + G+F + V G+ NLY AS V + IL A FS +L++
Sbjct: 121 ISPEIFSKFQDENGKFKESLASD---VLGLLNLYEASHVRTHADDILEDALAFSTIHLES 177
Query: 462 KTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGKTLYRMP 521
+ L +V A+E + +PR+ETR +I ++Y
Sbjct: 178 AAPH-------LKSPLREQVTHALEQCLHKGVPRVETRFFI------------SSIYDKE 218
Query: 522 YVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACK-LDKFGITRRALLLAYFVASASI 580
N+V L AKLD+N Q +H+ E + +W+ + R ++ YF A
Sbjct: 219 QSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVY 278
Query: 581 YEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWD 631
+EP Q R+ KT ++ + FD + K+ A+ + I WD
Sbjct: 279 FEPQYSQARVMLVKTISMISIVDDTFDAYG-TVKELEAYT----DAIQRWD 324
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 39/291 (13%)
Query: 343 VDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYD 402
+D ++RLGIS +F+ EI E LD +Y +N+ DL +++ FRLLR HG++
Sbjct: 71 IDIIERLGISYHFEKEIDEILDQIYN----------QNSNCNDLCTSALQFRLLRQHGFN 120
Query: 403 VSAEAFEHFE-KGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSAKYLKA 461
+S E F F+ + G+F + V G+ NLY AS V + IL A FS +L++
Sbjct: 121 ISPEIFSKFQDENGKFKESLASD---VLGLLNLYEASHVRTHADDILEDALAFSTIHLES 177
Query: 462 KTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGKTLYRMP 521
+ L +V A+E + +PR+ETR +I ++Y
Sbjct: 178 AAPH-------LKSPLREQVTHALEQCLHKGVPRVETRFFI------------SSIYDKE 218
Query: 522 YVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACK-LDKFGITRRALLLAYFVASASI 580
N+V L AKLD+N Q +H+ E + +W+ + R ++ YF A
Sbjct: 219 QSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVY 278
Query: 581 YEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWD 631
+EP Q R+ KT ++ + FD + K+ A+ + I WD
Sbjct: 279 FEPQYSQARVMLVKTISMISIVDDTFDAYG-TVKELEAYT----DAIQRWD 324
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 39/291 (13%)
Query: 343 VDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYD 402
+D ++RLGIS +F+ EI + LD +Y +N+ DL +++ FRLLR HG++
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYN----------QNSNCNDLCTSALQFRLLRQHGFN 120
Query: 403 VSAEAFEHFE-KGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSAKYLKA 461
+S E F F+ + G+F + V G+ NLY AS V + IL A FS +L++
Sbjct: 121 ISPEIFSKFQDENGKFKESLASD---VLGLLNLYEASHVRTHADDILEDALAFSTIHLES 177
Query: 462 KTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGKTLYRMP 521
+ L +V A+E + +PR+ETR +I ++Y
Sbjct: 178 AAPH-------LKSPLREQVTHALEQCLHKGVPRVETRFFI------------SSIYDKE 218
Query: 522 YVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACK-LDKFGITRRALLLAYFVASASI 580
N+V L AKLD+N Q +H+ E + +W+ + R ++ YF A
Sbjct: 219 QSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVY 278
Query: 581 YEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWD 631
+EP Q R+ KT ++ + FD + K+ A+ + I WD
Sbjct: 279 FEPQYSQARVMLVKTISMISIVDDTFDAYG-TVKELEAYT----DAIQRWD 324
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 39/291 (13%)
Query: 343 VDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYD 402
+D ++RLGIS +F+ EI + LD +Y +N+ DL +++ FRLLR HG++
Sbjct: 58 IDTIERLGISYHFEKEIDDILDQIYN----------QNSNCNDLCTSALQFRLLRQHGFN 107
Query: 403 VSAEAFEHFE-KGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSAKYLKA 461
+S E F F+ + G+F + V G+ NLY AS V + IL A FS +L++
Sbjct: 108 ISPEIFSKFQDENGKFKESLASD---VLGLLNLYEASHVRTHADDILEDALAFSTIHLES 164
Query: 462 KTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGKTLYRMP 521
+ L +V A+E + +PR+ETR +I ++Y
Sbjct: 165 AAPH-------LKSPLREQVTHALEQCLHKGVPRVETRFFI------------SSIYDKE 205
Query: 522 YVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACK-LDKFGITRRALLLAYFVASASI 580
N+V L AKLD+N Q +H+ E + +W+ + R ++ YF A
Sbjct: 206 QSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVY 265
Query: 581 YEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWD 631
+EP Q R+ KT ++ + FD + K+ A+ + I WD
Sbjct: 266 FEPQYSQARVMLVKTISMISIVDDTFDAY-GTVKELEAYT----DAIQRWD 311
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 39/291 (13%)
Query: 343 VDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYD 402
+D ++RLGIS +F+ EI + LD +Y +N+ DL +++ FRLLR HG++
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYN----------QNSNCNDLCTSALQFRLLRQHGFN 120
Query: 403 VSAEAFEHFE-KGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSAKYLKA 461
+S E F F+ + G+F + V G+ NLY AS V + IL A FS +L++
Sbjct: 121 ISPEIFSKFQDENGKFKESLASD---VLGLLNLYEASHVRTHADDILEDALAFSTIHLES 177
Query: 462 KTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGKTLYRMP 521
+ L +V A+E + +PR+ETR +I ++Y
Sbjct: 178 AAPH-------LKSPLREQVTHALEQCLHKGVPRVETRFFI------------SSIYDKE 218
Query: 522 YVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACK-LDKFGITRRALLLAYFVASASI 580
N+V L AKLD+N Q +H+ E + +W+ + R ++ YF A
Sbjct: 219 QSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVY 278
Query: 581 YEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWD 631
+EP Q R+ KT ++ + FD + K+ A+ + I WD
Sbjct: 279 FEPQYSQARVMLVKTISMISIVDDTFDAYG-TVKELEAYT----DAIQRWD 324
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 39/291 (13%)
Query: 343 VDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYD 402
+D ++RLGIS +F+ EI + LD +Y +N+ DL +++ FRLLR HG++
Sbjct: 73 IDTIERLGISYHFEKEIDDILDQIYN----------QNSNCNDLCTSALQFRLLRQHGFN 122
Query: 403 VSAEAFEHFE-KGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSAKYLKA 461
+S E F F+ + G+F + V G+ NLY AS V + IL A FS +L++
Sbjct: 123 ISPEIFSKFQDENGKFKESLASD---VLGLLNLYEASHVRTHADDILEDALAFSTIHLES 179
Query: 462 KTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGKTLYRMP 521
+ L +V A+E + +PR+ETR +I ++Y
Sbjct: 180 AAPH-------LKSPLREQVTHALEQCLHKGVPRVETRFFI------------SSIYDKE 220
Query: 522 YVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACK-LDKFGITRRALLLAYFVASASI 580
N+V L AKLD+N Q +H+ E + +W+ + R ++ YF A
Sbjct: 221 QSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVY 280
Query: 581 YEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWD 631
+EP Q R+ KT ++ + FD + K+ A+ + I WD
Sbjct: 281 FEPQYSQARVMLVKTISMISIVDDTFDAY-GTVKELEAYT----DAIQRWD 326
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 133/291 (45%), Gaps = 39/291 (13%)
Query: 343 VDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYD 402
+D ++RLGIS +F+ EI + LD +Y +N+ DL +++ FRLLR HG++
Sbjct: 73 IDTIERLGISYHFEKEIDDILDQIYN----------QNSNCNDLCTSALQFRLLRQHGFN 122
Query: 403 VSAEAFEHFE-KGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSAKYLKA 461
+S E F F+ + G+F + V G+ NLY AS V + IL A FS +L++
Sbjct: 123 ISPEIFSKFQDENGKFKESLASD---VLGLLNLYEASHVRTHADDILEDALAFSTIHLES 179
Query: 462 KTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGKTLYRMP 521
+ L +V A+E + +PR+ETR +I ++Y
Sbjct: 180 AAPH-------LKSPLREQVTHALEQCLHKGVPRVETRFFI------------SSIYDKE 220
Query: 522 YVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACK-LDKFGITRRALLLAYFVASASI 580
N+V L AKLD+N Q +H+ E + +W+ + R ++ YF
Sbjct: 221 QSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVY 280
Query: 581 YEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWD 631
+EP Q R+ KT ++ + FD + K+ A+ + I WD
Sbjct: 281 FEPQYSQARVMLVKTISMISIVDDTFDAY-GTVKELEAYT----DAIQRWD 326
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 154/353 (43%), Gaps = 43/353 (12%)
Query: 334 VDIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGF 393
D L +D LQR+G+S +FQ E KE L +Y + + R DL TS+ F
Sbjct: 48 TDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEER--DLYSTSLAF 105
Query: 394 RLLRLHGYDVSAEAFEHFE-KGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAK 452
RLLR HG+ V+ E F+ F+ + GEF + T+ G+ LY AS +L GE L A+
Sbjct: 106 RLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTR---GLLQLYEASFLLTEGETTLESAR 162
Query: 453 QFSAKYLKAKTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVW 512
+F+ K+L+ K +D DL +A+++++P + + R ++IE Y D+
Sbjct: 163 EFATKFLEEKVNEGGVD-----GDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDM- 216
Query: 513 IGKTLYRMPYVNNDVYLELAKLDYNNCQAVHRTEW-DSLQKWYAACKLDKFGITRRALLL 571
N V LELA LD N QA + E +S + W ++K R L+
Sbjct: 217 ------------NPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVE 264
Query: 572 AYFVASASIYEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWD 631
YF + I RI K L+ I +D + +F + I
Sbjct: 265 CYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYD-----VYGTLEELEQFTDLI---- 315
Query: 632 YINRRRWDSNKKGE-----RFAGKTLLGTLNHIALDALVANGRDIGGNLREAW 679
RRWD N + + L ++ + D + G ++ LR++W
Sbjct: 316 ----RRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSW 364
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 142/278 (51%), Gaps = 35/278 (12%)
Query: 338 EHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARN-TRVQDLDDTSMGFRLL 396
+ L + L+ LG+S +FQ EIKE L +Y E C+ N DL T++GFRLL
Sbjct: 56 QQLELIHDLKYLGLSDFFQDEIKEILGVIYN----EHKCFHNNEVEKMDLYFTALGFRLL 111
Query: 397 RLHGYDVSAEAFEHF--EKGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQF 454
R HG+++S + F F EKG +F + Q T+ G+ LY AS +L GE L A++F
Sbjct: 112 RQHGFNISQDVFNCFKNEKGIDFKASLAQDTK---GMLQLYEASFLLRKGEDTLELAREF 168
Query: 455 SAKYLKAKTAADLLDKW--IIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVW 512
+ K L+ K LD+ I ++L + ++++P + + +E R +I+ Y D+
Sbjct: 169 ATKCLQKK-----LDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDM- 222
Query: 513 IGKTLYRMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYA-ACKLDKFGITRRALLL 571
N + ELAKL++N QA H+ E L +W++ C +K R L+
Sbjct: 223 ------------NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVE 270
Query: 572 AYFVASASIYEPAR--WQERIAWAKTAVLVETITSYFD 607
++F A ++EP + +Q ++A A VL I +D
Sbjct: 271 SFFWA-VGMFEPHQHGYQRKMA-ATIIVLATVIDDIYD 306
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 129/297 (43%), Gaps = 41/297 (13%)
Query: 338 EHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLR 397
+ L +D +QRLG+S +F EI++ L+ +Y N DL TS+ FRLLR
Sbjct: 72 QKLAFIDSVQRLGVSYHFTKEIEDELENIYH---------NNNDAENDLYTTSIRFRLLR 122
Query: 398 LHGYDVSAEAFEHF--EKGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFS 455
HGY+VS + F F E+G F T V G+ LY+AS + GE IL A F+
Sbjct: 123 EHGYNVSCDVFNKFKDEQGN----FKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFT 178
Query: 456 AKYLKAKTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGK 515
+L A+ + L EV+ A++ LPR+E R Y+
Sbjct: 179 THHLSLAVAS-------LDHPLSEEVSHALKQSIRRGLPRVEARHYL------------- 218
Query: 516 TLYRMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKLD-KFGITRRALLLAYF 574
++Y+ +N LE AK+D+N Q +HR E + +W+ K R ++ YF
Sbjct: 219 SVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYF 278
Query: 575 VASASIYEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWD 631
S +EP R K V + S D DS + + N I WD
Sbjct: 279 WISGVYFEPQYSLGR----KMLTKVIAMASIVDDTYDSYATYEELI-PYTNAIERWD 330
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 157/351 (44%), Gaps = 45/351 (12%)
Query: 334 VDIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGF 393
VD L +D L+RLGIS +F+ EI E L+ +Y+T I +DL T++ F
Sbjct: 81 VDSIRRLELIDDLRRLGISCHFEREIVEILNS--KYYTNNEI------DERDLYSTALRF 132
Query: 394 RLLRLHGYDVSAEAFEHFE--KGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHA 451
RLLR + + VS E F+ F+ KG +F + T+ G+ LY AS + GE+ L A
Sbjct: 133 RLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTR---GLLQLYEASFLSAQGEETLRLA 189
Query: 452 KQFSAKYLKAKTAADLLDKWIIAKDLPGEVAFAMEVP--WYACLPRLETRLYIEQYGGED 509
+ F+ K+L+ + L+DK I +L + A+E+P W +P R +I+ Y
Sbjct: 190 RDFATKFLQKRV---LVDKDI---NLLSSIERALELPTHWRVQMP--NARSFIDAYKRRP 241
Query: 510 DVWIGKTLYRMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKL-DKFGITRRA 568
D+ N LELAKLD+N QA + E +W+ + L + R
Sbjct: 242 DM-------------NPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDR 288
Query: 569 LLLAYFVASASIYEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCIS 628
++ Y+ + + ERI K LV TI FD + ++ F I
Sbjct: 289 IVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEE-----LQLFTTAIQ 343
Query: 629 AWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDIGGNLREAW 679
WD + ++ + A L +N +A D L G D LR+ W
Sbjct: 344 RWDIESMKQLPPYMQICYLA---LFNFVNEMAYDTLRDKGFDSTPYLRKVW 391
>pdb|2B7J|A Chain A, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7J|B Chain B, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7J|C Chain C, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7J|D Chain D, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7K|A Chain A, Crystal Structure Of Yeast Sco1
pdb|2B7K|B Chain B, Crystal Structure Of Yeast Sco1
pdb|2B7K|C Chain C, Crystal Structure Of Yeast Sco1
pdb|2B7K|D Chain D, Crystal Structure Of Yeast Sco1
Length = 200
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 536 YNNCQAVHRTEWDSLQKWYAACKLDKFGITRRALLLAYFVASASIYEPARWQERIAWAKT 595
++NC + E D L W K+GIT + L + A S PA +E ++
Sbjct: 50 FSNCPDICPDELDKLGLWLNTLS-SKYGITLQPLFITCDPARDS---PAVLKEYLSDFHP 105
Query: 596 AVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWDYI 633
++L +T FD+ K++CK+ R + N DY+
Sbjct: 106 SIL--GLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYL 141
>pdb|4E4Z|A Chain A, Oxidized (cu2+) Peptidylglycine Alpha-hydroxylating
Monooxygenase (phm) In Complex With Hydrogen Peroxide
(1.98 A)
Length = 312
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Query: 369 YW-TEEGIC---------WARNTRVQDLDDTSMGFRL----------LRLHGYDVSAEAF 408
YW +EG C WARN L +GFR+ L++H D+SA
Sbjct: 79 YWFCDEGTCTDKANILYAWARNAPPTRLPK-GVGFRVGGETGSKYFVLQVHYGDISAFRD 137
Query: 409 EHFEKGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKIL 448
H + G + G+Y + V+ PGEK++
Sbjct: 138 NHKDCSGVSVHLTRVPQPLIAGMYLMMSVDTVIPPGEKVV 177
>pdb|1YJL|A Chain A, Reduced Peptidylglycine Alpha-Hydroxylating Monooxygenase
In A New Crystal Form
Length = 306
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Query: 369 YW-TEEGIC---------WARNTRVQDLDDTSMGFRL----------LRLHGYDVSAEAF 408
YW +EG C WARN L +GFR+ L++H D+SA
Sbjct: 74 YWFCDEGTCTDKANILYAWARNAPPTRLPK-GVGFRVGGETGSKYFVLQVHYGDISAFRD 132
Query: 409 EHFEKGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKIL 448
H + G + G+Y + V+ PGEK++
Sbjct: 133 NHKDCSGVSVHLTRVPQPLIAGMYLMMSVDTVIPPGEKVV 172
>pdb|1YJK|A Chain A, Reduced Peptidylglycine Alpha-Hydroxylating Monooxygenase
(Phm) In A New Crystal Form
Length = 306
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Query: 369 YW-TEEGIC---------WARNTRVQDLDDTSMGFRL----------LRLHGYDVSAEAF 408
YW +EG C WARN L +GFR+ L++H D+SA
Sbjct: 74 YWFCDEGTCTDKANILYAWARNAPPTRLPK-GVGFRVGGETGSKYFVLQVHYGDISAFRD 132
Query: 409 EHFEKGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKIL 448
H + G + G+Y + V+ PGEK++
Sbjct: 133 NHKDCSGVSVHLTRVPQPLIAGMYLMMSVDTVIPPGEKVV 172
>pdb|1YI9|A Chain A, Crystal Structure Analysis Of The Oxidized Form Of The
M314i Mutant Of Peptidylglycine Alpha-Hydroxylating
Monooxygenase
Length = 309
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Query: 369 YW-TEEGIC---------WARNTRVQDLDDTSMGFRL----------LRLHGYDVSAEAF 408
YW +EG C WARN L +GFR+ L++H D+SA
Sbjct: 77 YWFCDEGTCTDKANILYAWARNAPPTRLPK-GVGFRVGGETGSKYFVLQVHYGDISAFRD 135
Query: 409 EHFEKGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKIL 448
H + G + G+Y + V+ PGEK++
Sbjct: 136 NHKDCSGVSVHLTRVPQPLIAGMYLMMSVDTVIPPGEKVV 175
>pdb|1YIP|A Chain A, Oxidized Peptidylglycine Alpha-hydroxylating Monooxygenase
(phm) In A New Crystal Form
Length = 311
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Query: 369 YW-TEEGIC---------WARNTRVQDLDDTSMGFRL----------LRLHGYDVSAEAF 408
YW +EG C WARN L +GFR+ L++H D+SA
Sbjct: 79 YWFCDEGTCTDKANILYAWARNAPPTRLPK-GVGFRVGGETGSKYFVLQVHYGDISAFRD 137
Query: 409 EHFEKGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKIL 448
H + G + G+Y + V+ PGEK++
Sbjct: 138 NHKDCSGVSVHLTRVPQPLIAGMYLMMSVDTVIPPGEKVV 177
>pdb|1OPM|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Substrate
pdb|3PHM|A Chain A, Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm)
pdb|1PHM|A Chain A, Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm)
From Rat
Length = 310
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Query: 369 YW-TEEGIC---------WARNTRVQDLDDTSMGFRL----------LRLHGYDVSAEAF 408
YW +EG C WARN L +GFR+ L++H D+SA
Sbjct: 79 YWFCDEGTCTDKANILYAWARNAPPTRLPK-GVGFRVGGETGSKYFVLQVHYGDISAFRD 137
Query: 409 EHFEKGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKIL 448
H + G + G+Y + V+ PGEK++
Sbjct: 138 NHKDCSGVSVHLTRVPQPLIAGMYLMMSVDTVIPPGEKVV 177
>pdb|1SDW|A Chain A, Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase With Bound Peptide And Dioxygen
pdb|3MIB|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Nitrite
pdb|3MIC|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Azide Obtained By
Co-Crystallization
pdb|3MID|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Azide Obtained By Soaking
(100mm Nan3)
pdb|3MIE|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Azide Obtained By Soaking
(50mm Nan3)
pdb|3MIF|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Carbon Monooxide (Co)
pdb|3MIG|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Nitrite, Obtained In The
Presence Of Substrate
pdb|3MIH|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Azide, Obtained In The
Presence Of Substrate
pdb|3MLJ|A Chain A, Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Carbon Monooxide (Co)
pdb|3MLK|A Chain A, Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Nitrite
pdb|3MLL|A Chain A, Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Azide
Length = 314
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Query: 369 YW-TEEGIC---------WARNTRVQDLDDTSMGFRL----------LRLHGYDVSAEAF 408
YW +EG C WARN L +GFR+ L++H D+SA
Sbjct: 81 YWFCDEGTCTDKANILYAWARNAPPTRLPK-GVGFRVGGETGSKYFVLQVHYGDISAFRD 139
Query: 409 EHFEKGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKIL 448
H + G + G+Y + V+ PGEK++
Sbjct: 140 NHKDCSGVSVHLTRVPQPLIAGMYLMMSVDTVIPPGEKVV 179
>pdb|3N50|A Chain A, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|B Chain B, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|C Chain C, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|D Chain D, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|E Chain E, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|F Chain F, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
Length = 159
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 243 LQKIYDKRNLKLTRIPKDIMHNVPTTLLHSLEGMPDLNWQKLLKLQCQDGSFLFS 297
LQK+ + R+PK+++ L+ +L GMP N + +LK L+S
Sbjct: 104 LQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQEIILKRAADIAEALYS 158
>pdb|1TM0|A Chain A, Crystal Structure Of The Putative Proline Racemase From
Brucella Melitensis, Northeast Structural Genomics
Target Lr31
pdb|1TM0|B Chain B, Crystal Structure Of The Putative Proline Racemase From
Brucella Melitensis, Northeast Structural Genomics
Target Lr31
Length = 350
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 642 KKGERFAGKTLLGTLNHIALDALVANG 668
K GERF GK++LGT H LD ++ G
Sbjct: 273 KAGERFIGKSVLGTEFHCRLDKVLELG 299
>pdb|3MLP|A Chain A, Early B-Cell Factor 1 (Ebf1) Bound To Dna
pdb|3MLP|B Chain B, Early B-Cell Factor 1 (Ebf1) Bound To Dna
pdb|3MLP|E Chain E, Early B-Cell Factor 1 (Ebf1) Bound To Dna
pdb|3MLP|F Chain F, Early B-Cell Factor 1 (Ebf1) Bound To Dna
Length = 402
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 243 LQKIYDKRNLKLTRIPKDIMHNVPTTLLHSLEGMPDLNWQKLLKLQCQDGSFLFS 297
LQK+ + R+PK+++ L+ +L GMP N + +LK L+S
Sbjct: 329 LQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQEIILKRAADIAEALYS 383
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,538,706
Number of Sequences: 62578
Number of extensions: 1027602
Number of successful extensions: 2153
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2054
Number of HSP's gapped (non-prelim): 31
length of query: 821
length of database: 14,973,337
effective HSP length: 107
effective length of query: 714
effective length of database: 8,277,491
effective search space: 5910128574
effective search space used: 5910128574
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)