Query 003417
Match_columns 821
No_of_seqs 285 out of 876
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 23:02:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02592 ent-copalyl diphospha 100.0 2E-216 4E-221 1886.5 73.1 779 36-820 10-800 (800)
2 PLN02279 ent-kaur-16-ene synth 100.0 1E-193 3E-198 1700.6 66.1 702 97-821 32-778 (784)
3 cd00684 Terpene_cyclase_plant_ 100.0 2E-106 4E-111 939.8 45.1 468 314-818 33-542 (542)
4 PF01397 Terpene_synth: Terpen 100.0 8E-40 1.7E-44 329.5 12.8 173 296-485 9-183 (183)
5 PF03936 Terpene_synth_C: Terp 99.9 2E-26 4.3E-31 244.8 19.5 220 528-755 1-248 (270)
6 cd00868 Terpene_cyclase_C1 Ter 99.9 3.3E-24 7.1E-29 229.4 25.5 248 542-798 1-282 (284)
7 cd00687 Terpene_cyclase_nonpla 99.3 2.2E-11 4.8E-16 132.5 15.8 195 549-755 18-240 (303)
8 PLN02150 terpene synthase/cycl 99.1 1.3E-10 2.8E-15 106.1 6.6 77 743-821 1-96 (96)
9 cd00385 Isoprenoid_Biosyn_C1 I 98.3 6.1E-07 1.3E-11 91.7 6.1 161 575-755 2-187 (243)
10 cd02889 SQCY Squalene cyclase 97.9 0.00049 1.1E-08 76.3 18.8 53 145-202 3-58 (348)
11 TIGR01507 hopene_cyclase squal 97.8 0.0016 3.5E-08 78.5 21.6 280 117-401 37-395 (635)
12 PF13243 Prenyltrans_1: Prenyl 97.7 7.3E-05 1.6E-09 68.9 6.3 80 119-202 22-105 (109)
13 cd02892 SQCY_1 Squalene cyclas 97.6 0.024 5.2E-07 68.7 28.3 275 142-420 47-422 (634)
14 PF13243 Prenyltrans_1: Prenyl 97.6 2.1E-05 4.5E-10 72.5 1.4 55 145-203 3-59 (109)
15 TIGR03463 osq_cycl 2,3-oxidosq 97.5 0.0052 1.1E-07 74.2 20.6 58 143-202 44-103 (634)
16 TIGR01787 squalene_cyclas squa 97.5 0.014 3.1E-07 70.3 22.8 271 141-421 46-411 (621)
17 TIGR01787 squalene_cyclas squa 97.1 0.016 3.4E-07 70.0 18.1 247 141-402 227-564 (621)
18 cd02892 SQCY_1 Squalene cyclas 97.0 0.017 3.7E-07 69.9 17.5 245 143-402 238-580 (634)
19 TIGR01507 hopene_cyclase squal 97.0 0.021 4.7E-07 69.0 18.1 242 143-402 246-574 (635)
20 TIGR03463 osq_cycl 2,3-oxidosq 97.0 0.0023 4.9E-08 77.3 9.0 83 120-202 502-595 (634)
21 PF13249 Prenyltrans_2: Prenyl 96.8 0.0014 2.9E-08 60.5 4.4 54 147-204 1-56 (113)
22 PF13249 Prenyltrans_2: Prenyl 96.7 0.00087 1.9E-08 61.8 2.4 81 120-202 20-104 (113)
23 cd00688 ISOPREN_C2_like This g 96.7 0.032 6.9E-07 58.7 14.4 103 99-203 53-173 (300)
24 cd02890 PTase Protein prenyltr 96.3 0.2 4.4E-06 54.3 18.1 60 141-202 47-110 (286)
25 cd00688 ISOPREN_C2_like This g 96.3 0.12 2.5E-06 54.5 15.7 214 121-401 25-253 (300)
26 cd02897 A2M_2 Proteins similar 96.3 0.01 2.2E-07 64.7 7.7 85 120-204 77-174 (292)
27 cd02896 complement_C3_C4_C5 Pr 95.9 0.017 3.6E-07 63.4 7.0 86 120-205 78-185 (297)
28 cd02889 SQCY Squalene cyclase 95.5 0.035 7.5E-07 61.6 7.7 82 121-202 217-309 (348)
29 PLN03012 Camelliol C synthase 95.2 0.021 4.7E-07 69.6 5.2 55 144-201 593-650 (759)
30 PLN02993 lupeol synthase 95.1 0.48 1E-05 58.3 16.0 256 98-402 389-696 (763)
31 PLN03012 Camelliol C synthase 94.9 0.075 1.6E-06 65.0 8.6 82 120-201 615-712 (759)
32 PLN02993 lupeol synthase 94.8 0.07 1.5E-06 65.4 8.1 82 120-201 615-712 (763)
33 PF00432 Prenyltrans: Prenyltr 94.6 0.051 1.1E-06 42.4 4.2 38 144-183 4-41 (44)
34 PF07678 A2M_comp: A-macroglob 94.4 0.037 8.1E-07 59.1 3.9 89 118-206 22-129 (246)
35 cd02891 A2M_like Proteins simi 93.9 0.15 3.3E-06 54.7 7.4 86 120-205 76-173 (282)
36 PLN03201 RAB geranylgeranyl tr 93.0 6.7 0.00014 43.7 18.7 212 143-402 58-294 (316)
37 cd02890 PTase Protein prenyltr 90.6 0.71 1.5E-05 50.1 7.6 98 100-202 100-206 (286)
38 cd02894 GGTase-II Geranylgeran 90.3 14 0.0003 40.4 17.3 208 143-398 51-286 (287)
39 COG1689 Uncharacterized protei 89.9 16 0.00035 38.5 15.9 236 145-438 10-265 (274)
40 cd02897 A2M_2 Proteins similar 88.8 2.7 5.8E-05 45.9 10.3 111 281-403 55-196 (292)
41 cd02893 FTase Protein farnesyl 86.0 42 0.00092 37.0 17.7 57 143-201 49-109 (299)
42 TIGR02474 pec_lyase pectate ly 83.9 1 2.2E-05 49.3 3.8 57 143-201 69-148 (290)
43 cd02891 A2M_like Proteins simi 82.2 17 0.00037 38.9 12.4 120 280-412 54-204 (282)
44 cd02895 GGTase-I Geranylgerany 81.3 92 0.002 34.6 17.9 111 284-398 174-306 (307)
45 cd02894 GGTase-II Geranylgeran 80.5 6.3 0.00014 43.1 8.4 58 142-201 149-207 (287)
46 cd02896 complement_C3_C4_C5 Pr 74.3 16 0.00034 40.2 9.3 117 280-407 57-210 (297)
47 PF06330 TRI5: Trichodiene syn 74.0 63 0.0014 36.9 13.8 162 587-773 84-266 (376)
48 KOG0497 Oxidosqualene-lanoster 65.6 6.6 0.00014 47.5 4.2 51 145-201 593-649 (760)
49 cd02893 FTase Protein farnesyl 63.2 1.7E+02 0.0036 32.3 14.4 112 311-429 2-128 (299)
50 PLN03201 RAB geranylgeranyl tr 54.9 24 0.00053 39.3 6.1 56 143-202 106-164 (316)
51 cd02895 GGTase-I Geranylgerany 51.0 61 0.0013 35.9 8.5 59 141-201 165-227 (307)
52 PLN02710 farnesyltranstransfer 46.3 2.5E+02 0.0054 33.0 12.6 107 310-422 46-167 (439)
53 KOG0366 Protein geranylgeranyl 41.3 57 0.0012 35.4 5.9 57 143-201 68-125 (329)
54 KOG0497 Oxidosqualene-lanoster 41.0 35 0.00076 41.6 4.8 74 143-217 640-726 (760)
55 PLN02710 farnesyltranstransfer 39.0 55 0.0012 38.3 5.9 56 144-201 95-154 (439)
56 PF07678 A2M_comp: A-macroglob 32.3 91 0.002 33.2 6.0 109 281-400 3-146 (246)
57 PF09282 Mago-bind: Mago bindi 28.7 9.5 0.00021 27.0 -1.4 14 150-163 5-18 (27)
58 PLN02592 ent-copalyl diphospha 23.9 2.7E+02 0.0058 35.2 8.6 78 143-238 250-329 (800)
59 COG1689 Uncharacterized protei 23.2 5.2E+02 0.011 27.7 9.2 94 335-435 121-218 (274)
60 TIGR03092 SASP_sspI small, aci 20.4 2.1E+02 0.0046 24.7 4.7 47 607-663 9-55 (65)
61 PRK02955 small acid-soluble sp 20.3 2.1E+02 0.0044 25.0 4.6 47 607-663 12-58 (68)
62 KOG0365 Beta subunit of farnes 20.3 1.3E+03 0.029 26.4 13.5 214 311-579 75-306 (423)
63 KOG0366 Protein geranylgeranyl 20.0 1.4E+02 0.003 32.7 4.4 56 144-201 117-173 (329)
No 1
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=1.7e-216 Score=1886.52 Aligned_cols=779 Identities=73% Similarity=1.201 Sum_probs=742.4
Q ss_pred cccccccccccCcccccccccCCcccchhhhhhc--CCcccc-ccchhccchhhhhhhhhhccchhhHHHHHHHHHHHhc
Q 003417 36 PFQTKEKRINFNVRPRCSAISRPLIQGEYADVFQ--NGLPVI-KWKEIVEDDIEEDRIESKVCASNEIKERVHAIKSMLG 112 (821)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (821)
+|+.|+++++++.+.+|+++++|+ |++|.++++ +|.|++ +|+++++||.+++. .+++.++.+++++++||+||.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ir~~l~ 86 (800)
T PLN02592 10 LFVAKDKRRNGNIHCRCSAISKPR-TQEYADVFEVQNGLPLINKWHEIVEDDIEEEA--SKGSVSNEIKERVKTVKSMLS 86 (800)
T ss_pred ccccccccccCceecccccccCCc-ccccccchhcccCCcccccHHhhcccccchhh--ccccchhhHHHHHHHHHHHHh
Confidence 689999999999999999999999 999999974 899975 77888888887774 466778899999999999999
Q ss_pred cCCCCCcccchhhhhhhhccccCCCCCCCCChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccCchhh
Q 003417 113 SMEDGEISVSAYDTAWVALVEDIQGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIHHDKC 192 (821)
Q Consensus 113 ~~~~g~~S~S~YDTAWVAmvp~~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~~~~i 192 (821)
+|++|++|||+||||||||||+++|+++||||+||+|||+||++|||||++.+++.+|||+||||||+||++||+++++|
T Consensus 87 ~~~~g~~S~S~YDTAWVAmVp~~~g~~~p~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i 166 (800)
T PLN02592 87 SMEDGEISISAYDTAWVALVEDINGSGTPQFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLHPEKC 166 (800)
T ss_pred cccCCCcCCcHHHhHHHhhcccCCCCCCCCCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhccHHHH
Confidence 99999999999999999999999999999999999999999999999999877889999999999999999999999999
Q ss_pred hhHHHHHHHhHhhhhccCCCCCCceEeEehhHHHHHHHhCCCCCCCCChhhHHHHHHhhhhhcCCCCccccccchhHHHH
Q 003417 193 HKGLLFFKENISKLENENDEHMPIGFEVAFPSLLEIARSLDIEVPYDSPVLQKIYDKRNLKLTRIPKDIMHNVPTTLLHS 272 (821)
Q Consensus 193 ~~Gl~fl~~nl~~~~~~~~~~~~vgfeii~P~Ll~~a~~lgl~~p~~~~~l~~l~~~r~~kL~r~~~~~~~~~p~~llhs 272 (821)
+||++||++|+++|.+++.+++|||||||||+||++|+++||+||++.+.+..|+++|+.||+|++++.+|++|++|+||
T Consensus 167 ~rGl~fi~~nl~~~~~~~~~~~pvGFeIifP~LLe~a~~lgL~~p~~~~~l~~i~~~r~~kL~r~~~~~~~~~p~~llhs 246 (800)
T PLN02592 167 EKGMSFFRENICKLEDENAEHMPIGFEVAFPSLLEIAKNLDIEVPYDSPVLKEIYAQRNLKLTRIPKDIMHKVPTTLLHS 246 (800)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCceEEeeHHHHHHHHHHcCCCCCCCcHHHHHHHHhhHHHHhhCchhhhccCcchHHHH
Confidence 99999999999999877778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcchHHHhhcccCCCcccCCccHHHHHHhccCchhHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHcCCC
Q 003417 273 LEGMPDLNWQKLLKLQCQDGSFLFSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVPNVYPVDIFEHLWAVDRLQRLGIS 352 (821)
Q Consensus 273 lEgl~~~d~~~v~~~~~~~GS~~~SPSaTAa~l~~~~d~~~l~YL~~~v~~~~g~VP~~yP~d~fe~Lw~VD~LqRLGIs 352 (821)
||||+++||++++++|++|||||+||||||||||+++|++|++||++++++++||||++||+|+||++|+||+||||||+
T Consensus 247 lEgl~~~dw~~v~~~q~~~GS~~~SPSaTAaaL~~~~d~~cl~YL~~~~~k~~GgVP~vyP~d~fE~LwlVDtLqRLGIs 326 (800)
T PLN02592 247 LEGMPGLDWEKLLKLQCQDGSFLFSPSSTAFALMQTKDENCLEYLNKAVQRFNGGVPNVYPVDLFEHIWAVDRLQRLGIS 326 (800)
T ss_pred HhccccCCHHHHhcccCCCCCccCCchHHHHHHhccCchHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhccccccccCCCCCChHHHHHHHHHHHHcCCccchhhhhccccCCceeeccCCccchHHHHH
Q 003417 353 RYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYDVSAEAFEHFEKGGEFFCFVGQSTQAVTGVY 432 (821)
Q Consensus 353 ~~F~~EI~~~Ld~i~~~~~~~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~VS~dvf~~F~~~g~F~~~~~e~~~dvs~~l 432 (821)
+||++||+++|+++|++|.++|++++++....|+|||||+||+||+|||+||||+|++|+++|+|+|+.+++++|++|||
T Consensus 327 ~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~~~g~F~~~~ge~~~Dv~glL 406 (800)
T PLN02592 327 RYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEKGGEFFCFAGQSTQAVTGMF 406 (800)
T ss_pred cccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcCCCCccccccccccchHHHH
Confidence 99999999999999999987777776655568999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhccCCCChhHHHHHHHHHHHHHHHHhhc-cchhhhhhcCCChhHHHHhccCccccccchhHHHHHHHHhcCCCcc
Q 003417 433 NLYRASQVLFPGEKILGHAKQFSAKYLKAKTAA-DLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDV 511 (821)
Q Consensus 433 ~Ly~AS~l~~~gE~iL~eA~~fs~~~L~~~~~~-~~~Dkw~~s~~l~~eV~~aL~~P~~~~l~RleaR~yIe~Y~~~~~~ 511 (821)
|||||||+++|||.||++|+.||++||++.+.. .+.|||+++++|++||+|||++|||++|||||||+||++|++++++
T Consensus 407 ~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~~~l~RlEaR~yI~~Y~~~~~~ 486 (800)
T PLN02592 407 NLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWYASLPRVETRFYIEQYGGEDDV 486 (800)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhhcCcchHHHHHHHHHhcCCccc
Confidence 999999999999999999999999999998754 7889999999999999999999999999999999999999988999
Q ss_pred hhhhhhccCCCCCCHHHHHHHHhhhhhhhhchhhhHHHHHHHHHhcCCCcCCcchhhHHHHHHHHhhcccCCcchhHHHH
Q 003417 512 WIGKTLYRMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKLDKFGITRRALLLAYFVASASIYEPARWQERIA 591 (821)
Q Consensus 512 wi~Kt~Yrm~~v~n~~lLeLAklDFn~~Qs~hq~El~~l~rWw~e~~l~~l~faR~r~ve~Yf~aaa~~fEPe~s~~Ri~ 591 (821)
|||||+||||+++|++||||||+|||+||++||+||++|+||||++||++|||+|||++|||||++|++||||||++|++
T Consensus 487 ~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L~~L~faRdr~ve~Yfwa~~~~feP~~s~~Ri~ 566 (800)
T PLN02592 487 WIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNLGEFGVSRSELLLAYFLAAASIFEPERSHERLA 566 (800)
T ss_pred chhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCCCcCCcchhHHHHHHHHHHHhhcCccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccCCCcHHHHHHHHHHHHh---h-hhhhhhhhcccCCC----chhhHhHHHHHHHHHHHHHHHHH
Q 003417 592 WAKTAVLVETITSYFDKQKDSCKQRRAFVREFRN---C-ISAWDYINRRRWDS----NKKGERFAGKTLLGTLNHIALDA 663 (821)
Q Consensus 592 ~aK~~~L~tviDD~fD~ygts~eEl~~f~~~f~~---~-~~~wD~~~~~~lp~----~~~~k~~f~~aL~~t~nei~~~~ 663 (821)
|||+++|+|+|||+||+||| +|||++||++|++ | ..|||...+++||+ +|.||+|| .|||||+|||+.++
T Consensus 567 ~aK~~~LitviDD~fD~yGt-~eEl~~ft~~v~~~~~~~~~rWd~~~~~~lp~~~~~~~~mki~f-~aLy~tineia~~a 644 (800)
T PLN02592 567 WAKTTVLVEAISSYFNKETS-SKQRRAFLHEFGYGYKINGRRSDHHFNDRNMRRSGSVKTGEELV-GLLLGTLNQLSLDA 644 (800)
T ss_pred HHHHHHHHHhhcccccCCCC-HHHHHHHHHHHHhcccccccccCchhhhcccccccchhHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999998 9999999999973 4 35999989999988 34599999 99999999999999
Q ss_pred HHhcCcchHHHHHHHHHHHHHHHhhCCCcccchHHHHHHHHHhccCcccchhhcCChhHHHHHHHHHHHhhhhhhhHHHH
Q 003417 664 LVANGRDIGGNLREAWEKWLTTWQDDGNSHWGVAELLVQTINLSAGRLLSEELLCHPEYARLSYLTNRICHTLGHYHKQK 743 (821)
Q Consensus 664 ~~~~g~~i~~~L~~~W~~l~~~W~~eg~~~~~~~~llv~~~~l~~G~~l~eel~~~p~~~~l~~li~Rl~~DL~t~~~Ek 743 (821)
++.||+||++||+++|.+||++|+.+|+++.|.++++++++++++|+.++|+++++|+|.+++++|+||||||+++++|+
T Consensus 645 ~~~qGr~v~~~L~~~W~~l~~~w~~~g~~s~~~~~ilv~~~~l~~g~~lsee~l~~~~~~~l~~li~Rl~nDl~t~~~e~ 724 (800)
T PLN02592 645 LEAHGRDISHLLRHAWEMWLLKWLLEGDGRQGEAELLVKTINLTAGRSLSEELLAHPQYEQLAQLTNRICYQLGHYKKNK 724 (800)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHhcCceeccchhhHHHHHHHhcCCCCCHHHccchhHHHHHHHHHHHHHhhhHHhhhc
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred hhccccccccchhhhhhcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhccCChHHHHHHHhhccccccC
Q 003417 744 VQVNRNNNIGNNRITALSVEPDMQELVQLVLQNSSSGIGSDVKQTFLTVAKSFYYCAYCDAETINSHIGKVLFQTVD 820 (821)
Q Consensus 744 ~~G~~~YmkE~~~~i~~~iE~~~rEL~qlvl~~~~~~vp~~~Kq~flnvaR~fyY~a~~~~~~ik~hI~kVLfEPI~ 820 (821)
+.+.. +.+++.+++++.||.+||||+++|+++++++||++||++||+|||+|||.+||+|++|+.||++||||||+
T Consensus 725 ~~~~~-~~~~a~~~~~~~ie~~~~eL~~lvl~~~~~~vp~~cK~~f~~~~k~fy~~~~~~~~~~~~~i~~vl~epv~ 800 (800)
T PLN02592 725 VHINT-YNPEEKSKTTPSIESDMQELVQLVLQNSSDDIDPVIKQTFLMVAKSFYYAAYCDPGTINYHIAKVLFERVA 800 (800)
T ss_pred ccCCc-ccHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhCCCCC
Confidence 75432 34466678899999999999999998655689999999999999999999999999999999999999985
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=1.3e-193 Score=1700.59 Aligned_cols=702 Identities=31% Similarity=0.573 Sum_probs=649.9
Q ss_pred hhhHHHHHHHHHHHhccCCCCCcccchhhhhhhhccccCCCCCCCCChhHHHHHHhccCCCCCCCCC--CCCCchhhHhh
Q 003417 97 SNEIKERVHAIKSMLGSMEDGEISVSAYDTAWVALVEDIQGSGAPQFPSSLHWIANSQLPDGSWGDH--LLFSAHDRLIN 174 (821)
Q Consensus 97 ~~~~~~~~~~i~~~~~~~~~g~~S~S~YDTAWVAmvp~~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~--~~~~~~d~ll~ 174 (821)
+..+++++++||+||.+| ++|||+||||||||||+++|+++||||+||+|||+||++|||||.+ ..++.+|||+|
T Consensus 32 ~~~~~~~~~~i~~~l~~~---e~s~s~YDTAWvamv~~~~~~~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~ 108 (784)
T PLN02279 32 NVSFEGTKERIKKMFDKV---ELSVSSYDTAWVAMVPSPNSQQAPLFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSS 108 (784)
T ss_pred cccchhHHHHHHHHhccC---cCCCchhhhHHHHhcccCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHH
Confidence 455688999999999999 8999999999999999999999999999999999999999999954 45778999999
Q ss_pred hHHHHHHHHhhccCchhhhhHHHHHHHhHhhhhccCCCCCCceEeEehhHHHHHHHhCCCCCCCCChhhHHHHHHhhhhh
Q 003417 175 TLACVVALRSWNIHHDKCHKGLLFFKENISKLENENDEHMPIGFEVAFPSLLEIARSLDIEVPYDSPVLQKIYDKRNLKL 254 (821)
Q Consensus 175 TLA~vlAL~~w~~~~~~i~~Gl~fl~~nl~~~~~~~~~~~~vgfeii~P~Ll~~a~~lgl~~p~~~~~l~~l~~~r~~kL 254 (821)
|||||||||+||+|+++|+||+.||++|++.+.++ .+++|||||||||+||++|+++||+||++++.++.|+++|+.||
T Consensus 109 TlAcvlAL~~w~~~~~~~~~gl~fi~~n~~~~~d~-~~~~pvGfei~fP~ll~~a~~~gl~~~~~~~~l~~~~~~r~~~l 187 (784)
T PLN02279 109 TLASILALKKWGVGEEQINKGLQFIELNSASVTDE-KQHKPIGFDIIFPGMIEYAKDLDLNLPLGSEVVDAMLHKRDLDL 187 (784)
T ss_pred HHHHHHHHHHHhcCcccchhhHHHHHHHHHhhccc-ccCCCceEEEehHHHHHHHHHcCCCCCCChHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999997654 68999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccchhHHHHHhcCCC-cchHHHhhcccCCCcccCCccHHHHHHhccCchhHHHHHHHHHHHhcCCCCCCCc
Q 003417 255 TRIPKDIMHNVPTTLLHSLEGMPD-LNWQKLLKLQCQDGSFLFSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVPNVYP 333 (821)
Q Consensus 255 ~r~~~~~~~~~p~~llhslEgl~~-~d~~~v~~~~~~~GS~~~SPSaTAa~l~~~~d~~~l~YL~~~v~~~~g~VP~~yP 333 (821)
+|++.+..++.|++|+||||||++ +||++|+|+|++|||+++||||||||||+++|++|++||++++++++||||++||
T Consensus 188 ~~~~~~~~~~~~~~l~~s~Egl~~~~dw~~v~~~q~~~Gs~~~SPsaTAa~l~~~~~~~~~~yL~~~~~~~~g~vP~~yp 267 (784)
T PLN02279 188 KSGGGSNTKGREAYLAYVSEGIGKLQDWEMVMKYQRKNGSLFNSPSTTAAAFSHLQNAGCLRYLRSLLQKFGNAVPTVYP 267 (784)
T ss_pred hhcchhhcCCCcchHHHHHhhccccccHHHHHhhcCCCCCcccCcHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCCCc
Confidence 999999988999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhccccccccCCCCCChHHHHHHHHHHHHcCCccchhhhhcccc
Q 003417 334 VDIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYDVSAEAFEHFEK 413 (821)
Q Consensus 334 ~d~fe~Lw~VD~LqRLGIs~~F~~EI~~~Ld~i~~~~~~~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~VS~dvf~~F~~ 413 (821)
+++||++|+||+||||||+|||++||+++|+++|++|.+.+ +....|+++|||+|||||||||+||||||++|++
T Consensus 268 ~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~-----~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~ 342 (784)
T PLN02279 268 LDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGE-----EEIFLDLATCALAFRILRLNGYDVSSDPLKQFAE 342 (784)
T ss_pred ccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccc-----cCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCC
Confidence 99999999999999999999999999999999999987522 2235799999999999999999999999999997
Q ss_pred CCceeeccCCccchHHHHHhHHhhhccCCCChhHHHHHHHHHHHHHHHHhhc-cchhhhhhcCCChhHHHHhccCccccc
Q 003417 414 GGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSAKYLKAKTAA-DLLDKWIIAKDLPGEVAFAMEVPWYAC 492 (821)
Q Consensus 414 ~g~F~~~~~e~~~dvs~~l~Ly~AS~l~~~gE~iL~eA~~fs~~~L~~~~~~-~~~Dkw~~s~~l~~eV~~aL~~P~~~~ 492 (821)
++ |+|+.++..+|++||||||||||+++|||.|||+|+.||++||++.+.. .+.|| +++++|++||+|||++|||++
T Consensus 343 ~~-F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~-~~~~~L~~eV~~AL~~P~~~~ 420 (784)
T PLN02279 343 DH-FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTAD-RLRKYIKKEVEDALNFPYYAN 420 (784)
T ss_pred Cc-ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhccccccc-ccCccHHHHHHHHhcCchhcC
Confidence 77 9999999999999999999999999999999999999999999998765 55566 568899999999999999999
Q ss_pred cchhHHHHHHHHhcCCCcchhhhhhccCCCCCCHHHHHHHHhhhhhhhhchhhhHHHHHHHHHhcCCCcCCcchhhHHHH
Q 003417 493 LPRLETRLYIEQYGGEDDVWIGKTLYRMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKLDKFGITRRALLLA 572 (821)
Q Consensus 493 l~RleaR~yIe~Y~~~~~~wi~Kt~Yrm~~v~n~~lLeLAklDFn~~Qs~hq~El~~l~rWw~e~~l~~l~faR~r~ve~ 572 (821)
|||||||+||++|+ .+++|||||+||||+++|++||||||+|||+||++||+||++|+|||+++||++|||+|||++||
T Consensus 421 l~RlEaR~yI~~Y~-~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L~~L~faRdr~ve~ 499 (784)
T PLN02279 421 LERLANRRSIENYA-VDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRLDKLKFARQKLAYC 499 (784)
T ss_pred ccHHHHHHHHHHhc-cccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCCccCCchhhHHHHH
Confidence 99999999999997 68899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCcchhHHHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHHHHhhhhhhhhh-hcccCCCchhhHhHHHHH
Q 003417 573 YFVASASIYEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWDYI-NRRRWDSNKKGERFAGKT 651 (821)
Q Consensus 573 Yf~aaa~~fEPe~s~~Ri~~aK~~~L~tviDD~fD~ygts~eEl~~f~~~f~~~~~~wD~~-~~~~lp~~~~~k~~f~~a 651 (821)
||||+|++||||||.+|++|||+++|+|+|||+||+||| +|||++||+++ +|||.. .++.+|+| ||+|| .+
T Consensus 500 Yf~aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt-~eEL~~ft~aV----eRWD~~~~~~~lpey--mki~f-~a 571 (784)
T PLN02279 500 YFSAAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGS-EEELENLIQLV----EKWDVNGSPDFCSEQ--VEIIF-SA 571 (784)
T ss_pred HHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCC-HHHHHHHHHHH----HHhccccchhhCcHH--HHHHH-HH
Confidence 999999999999999999999999999999999999998 99999998755 566655 45778988 99999 99
Q ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH------HhhCCCcccchHH-------------HHHHHHHhccCccc
Q 003417 652 LLGTLNHIALDALVANGRDIGGNLREAWEKWLTT------WQDDGNSHWGVAE-------------LLVQTINLSAGRLL 712 (821)
Q Consensus 652 L~~t~nei~~~~~~~~g~~i~~~L~~~W~~l~~~------W~~eg~~~~~~~~-------------llv~~~~l~~G~~l 712 (821)
|++|+|||+.++++.||+++++|++++|++++++ |..+||+|+ ..+ +++++++++ |+.+
T Consensus 572 L~~t~nei~~~~~~~qGr~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT-~eEYL~na~vS~~l~~i~l~~~~~~-G~~l 649 (784)
T PLN02279 572 LRSTISEIGDKAFTWQGRNVTSHIIKIWLDLLKSMLTEAQWSSNKSTPT-LDEYMTNAYVSFALGPIVLPALYLV-GPKL 649 (784)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHhhchhhhhhHHHHHHHHHHh-CCCC
Confidence 9999999999999999999999999999999985 999999995 232 334444444 7888
Q ss_pred chhhcCC---hhHHHHHHHHHHHhhhhhhhHHHHhhcccc----ccccch---------hhhhhcHHHHHHHHHHHHHhc
Q 003417 713 SEELLCH---PEYARLSYLTNRICHTLGHYHKQKVQVNRN----NNIGNN---------RITALSVEPDMQELVQLVLQN 776 (821)
Q Consensus 713 ~eel~~~---p~~~~l~~li~Rl~~DL~t~~~Ek~~G~~~----YmkE~~---------~~i~~~iE~~~rEL~qlvl~~ 776 (821)
+++++.+ |++.++++.|+|++|||++|++|+++|+.+ ||+|++ .+++++|++.||+|+++|+++
T Consensus 650 ~eev~e~~~~~~L~~l~s~I~RLlNDI~S~e~E~~rG~~nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn~~~l~~ 729 (784)
T PLN02279 650 SEEVVDSPELHKLYKLMSTCGRLLNDIRGFKRESKEGKLNAVSLHMIHGNGNSTEEEAIESMKGLIESQRRELLRLVLQE 729 (784)
T ss_pred CHHHHhCcchhHHHHHHHHHHHHHHhccccHhHHhCCCcceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9887654 677888999999999999999999999986 999852 368899999999999999975
Q ss_pred CCCCCCHHHHHHHHHHHHHH--Hhh---ccCChHHHHHHHhhccccccCC
Q 003417 777 SSSGIGSDVKQTFLTVAKSF--YYC---AYCDAETINSHIGKVLFQTVDI 821 (821)
Q Consensus 777 ~~~~vp~~~Kq~flnvaR~f--yY~---a~~~~~~ik~hI~kVLfEPI~i 821 (821)
+.+.+|++||++|||+||++ +|+ +|+++ .|+++|++||++||++
T Consensus 730 ~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~-~~k~~i~~ll~ePi~l 778 (784)
T PLN02279 730 KGSNVPRECKDLFWKMSKVLHLFYRKDDGFTSN-DMMSLVKSVIYEPVSL 778 (784)
T ss_pred CCCCCCHHHHHHHHHHHHhhhhheeCCCCCChH-HHHHHHHHHhccCCcC
Confidence 44579999999999999985 444 68876 6999999999999985
No 3
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=1.7e-106 Score=939.81 Aligned_cols=468 Identities=37% Similarity=0.633 Sum_probs=418.2
Q ss_pred HHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhccccccccCCCCCChHHHHHHH
Q 003417 314 LKYLTKAVQRFNGGVPNVYPVDIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGF 393 (821)
Q Consensus 314 l~YL~~~v~~~~g~VP~~yP~d~fe~Lw~VD~LqRLGIs~~F~~EI~~~Ld~i~~~~~~~gi~~~~~~~~~DlddTAlaF 393 (821)
.+-|+..|+++... +.||.|++++||+||+||||||+|||++||+++|+++|++|.+.| +....|+++|||+|
T Consensus 33 ~~~lk~~v~~~~~~--~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~-----~~~~~dl~~~al~F 105 (542)
T cd00684 33 IEELKEEVRKMLED--SEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTERG-----ESNEDDLYTTALGF 105 (542)
T ss_pred HHHHHHHHHHHHHh--cccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhhcccc-----cccCCCHHHHHHHH
Confidence 45577777776532 128999999999999999999999999999999999999987654 22246999999999
Q ss_pred HHHHHcCCccchhhhhccc-cCCceeeccCCccchHHHHHhHHhhhccCCCChhHHHHHHHHHHHHHHHHhhccchhhhh
Q 003417 394 RLLRLHGYDVSAEAFEHFE-KGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSAKYLKAKTAADLLDKWI 472 (821)
Q Consensus 394 rlLR~~Gy~VS~dvf~~F~-~~g~F~~~~~e~~~dvs~~l~Ly~AS~l~~~gE~iL~eA~~fs~~~L~~~~~~~~~Dkw~ 472 (821)
||||||||+||||||++|+ ++|.|+|+. .+|++|||+||||||++++||.||++|+.||++||++.+.. +|+
T Consensus 106 RlLR~~Gy~vs~dvf~~F~~~~g~f~~~~---~~d~~g~l~Ly~As~l~~~gE~iLdeA~~ft~~~L~~~~~~----~~~ 178 (542)
T cd00684 106 RLLRQHGYNVSSDVFKKFKDEDGKFKESL---TQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLES----NWI 178 (542)
T ss_pred HHHHHcCCCcCHHHHhhhcCCCCCcCchh---hhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHhhc----cCC
Confidence 9999999999999999999 669998764 78999999999999999999999999999999999986643 277
Q ss_pred hcCCChhHHHHhccCccccccchhHHHHHHHHhcCCCcchhhhhhccCCCCCCHHHHHHHHhhhhhhhhchhhhHHHHHH
Q 003417 473 IAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGKTLYRMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQK 552 (821)
Q Consensus 473 ~s~~l~~eV~~aL~~P~~~~l~RleaR~yIe~Y~~~~~~wi~Kt~Yrm~~v~n~~lLeLAklDFn~~Qs~hq~El~~l~r 552 (821)
++++|++||+|||++|||+++||||||+||++|+++++ +|++||||||+|||+||++||+||++++|
T Consensus 179 ~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~-------------~n~~lLelAkldfn~~Q~~hq~El~~~~r 245 (542)
T cd00684 179 IDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDD-------------HNETLLELAKLDFNILQALHQEELKILSR 245 (542)
T ss_pred CCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCcc-------------ccHHHHHHHHHHHHHHhHhHHHHHHHHhH
Confidence 88999999999999999999999999999999998776 69999999999999999999999999999
Q ss_pred HHHhcCCC-cCCcchhhHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHHHHhhhhhhh
Q 003417 553 WYAACKLD-KFGITRRALLLAYFVASASIYEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWD 631 (821)
Q Consensus 553 Ww~e~~l~-~l~faR~r~ve~Yf~aaa~~fEPe~s~~Ri~~aK~~~L~tviDD~fD~ygts~eEl~~f~~~f~~~~~~wD 631 (821)
||+++||. +|||+|+|+++||||++|++|||++|.+|++|||+++++++|||+||+||| .||++.||++ ++|||
T Consensus 246 Wwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt-~eEl~~ft~a----i~rwd 320 (542)
T cd00684 246 WWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGT-LEELELFTEA----VERWD 320 (542)
T ss_pred HHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCC-HHHHHHHHHH----HHhcc
Confidence 99999996 579999999999999999999999999999999999999999999999998 9999999874 45777
Q ss_pred hhhcccCCCchhhHhHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH------HHhhCCCccc-----------
Q 003417 632 YINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLT------TWQDDGNSHW----------- 694 (821)
Q Consensus 632 ~~~~~~lp~~~~~k~~f~~aL~~t~nei~~~~~~~~g~~i~~~L~~~W~~l~~------~W~~eg~~~~----------- 694 (821)
..+++++|+| ||++| .+|+++++|++.++.+.+|++..+|++++|+++++ +|.++|++|+
T Consensus 321 ~~~~~~lPe~--mk~~~-~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S 397 (542)
T cd00684 321 ISAIDQLPEY--MKIVF-KALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVS 397 (542)
T ss_pred ccchhhccHH--HHHHH-HHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHH
Confidence 7788899998 99999 99999999999999999999999999999999997 6999999987
Q ss_pred -chHHHHHHHHHhccCcccchhh----cCChhHHHHHHHHHHHhhhhhhhHHHHhhcccc-----ccccch-------hh
Q 003417 695 -GVAELLVQTINLSAGRLLSEEL----LCHPEYARLSYLTNRICHTLGHYHKQKVQVNRN-----NNIGNN-------RI 757 (821)
Q Consensus 695 -~~~~llv~~~~l~~G~~l~eel----~~~p~~~~l~~li~Rl~~DL~t~~~Ek~~G~~~-----YmkE~~-------~~ 757 (821)
|...++..+. +++|..+++++ ...|++.++++.+.|++||+.++++|+++|+++ ||+|++ .+
T Consensus 398 ~g~~~~~~~~~-~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~ 476 (542)
T cd00684 398 IGLGPLLLTSF-LGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREE 476 (542)
T ss_pred hhHHHHHHHHH-HhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHHHHHH
Confidence 2223344444 44577788773 445899999999999999999999999999975 999885 36
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH--hh---ccCCh-HHHHHHHhhccccc
Q 003417 758 TALSVEPDMQELVQLVLQNSSSGIGSDVKQTFLTVAKSFY--YC---AYCDA-ETINSHIGKVLFQT 818 (821)
Q Consensus 758 i~~~iE~~~rEL~qlvl~~~~~~vp~~~Kq~flnvaR~fy--Y~---a~~~~-~~ik~hI~kVLfEP 818 (821)
+.+++++.||++++++++.+ +++|++|++.|||+||+++ |. +|+.+ +.|++||++|||+|
T Consensus 477 i~~~ie~~wk~ln~e~l~~~-~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p 542 (542)
T cd00684 477 IKKMIEDAWKELNEEFLKPS-SDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP 542 (542)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence 88999999999999999754 5799999999999999863 33 57766 46999999999998
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=8e-40 Score=329.48 Aligned_cols=173 Identities=42% Similarity=0.662 Sum_probs=145.1
Q ss_pred CCccHHHHHHhccCchhHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhcccc
Q 003417 296 FSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVPNVYPVDIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGI 375 (821)
Q Consensus 296 ~SPSaTAa~l~~~~d~~~l~YL~~~v~~~~g~VP~~yP~d~fe~Lw~VD~LqRLGIs~~F~~EI~~~Ld~i~~~~~~~gi 375 (821)
.||+.|++ +++.+++|.++++.+.++..+.+|+++| +++++|++||+||||||+|||++||+++|+++|+.|...+.
T Consensus 9 ~s~~~~~~--~~~~~~~~~~~~~~Lk~~v~~~l~~~~~-d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~ 85 (183)
T PF01397_consen 9 LSPSYTAC--MQSEDEKCKERAEELKEEVRNMLPASYP-DPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSWDEDNE 85 (183)
T ss_dssp TBHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHSSSS-HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTTTTTSH
T ss_pred CCCcchhc--cchhHHHHHHHHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhcccccc
Confidence 68999998 7778889998888877777666677778 99999999999999999999999999999999999876542
Q ss_pred ccccCCCCCChHHHHHHHHHHHHcCCccchhhhhccc-cCCceeeccCCccchHHHHHhHHhhhccCCCChhHHHHHHHH
Q 003417 376 CWARNTRVQDLDDTSMGFRLLRLHGYDVSAEAFEHFE-KGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQF 454 (821)
Q Consensus 376 ~~~~~~~~~DlddTAlaFrlLR~~Gy~VS~dvf~~F~-~~g~F~~~~~e~~~dvs~~l~Ly~AS~l~~~gE~iL~eA~~f 454 (821)
+ ..|+++|||+|||||||||+||||||++|+ ++|.|+ .....|++|||+||||||++++||+||++|+.|
T Consensus 86 ~------~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~---~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~F 156 (183)
T PF01397_consen 86 E------IDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFK---ESLSNDVKGLLSLYEASHLRFHGEDILDEARAF 156 (183)
T ss_dssp T------SSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBS---GGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHH
T ss_pred c------cCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccc---hhhhHhHHHHHHHHHHHHccCCChHHHHHHHHH
Confidence 2 239999999999999999999999999999 888886 367799999999999999999999999999999
Q ss_pred HHHHHHHHhhc-cchhhhhhcCCChhHHHHhc
Q 003417 455 SAKYLKAKTAA-DLLDKWIIAKDLPGEVAFAM 485 (821)
Q Consensus 455 s~~~L~~~~~~-~~~Dkw~~s~~l~~eV~~aL 485 (821)
|+++|++.+.. ... .++|+++|+|||
T Consensus 157 t~~~L~~~~~~~~~~-----~~~L~~~V~~AL 183 (183)
T PF01397_consen 157 TTKHLKSLLSNLSIP-----DPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHHHHHTTTCTT-----SCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCC-----cHHHHHHHHHhC
Confidence 99999997654 321 235899999997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=99.94 E-value=2e-26 Score=244.78 Aligned_cols=220 Identities=25% Similarity=0.330 Sum_probs=179.3
Q ss_pred HHHHHHhhhhhhhhchhhhHHHHHHHHHhcCC-CcCCcchhhHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhhhhhh
Q 003417 528 YLELAKLDYNNCQAVHRTEWDSLQKWYAACKL-DKFGITRRALLLAYFVASASIYEPARWQERIAWAKTAVLVETITSYF 606 (821)
Q Consensus 528 lLeLAklDFn~~Qs~hq~El~~l~rWw~e~~l-~~l~faR~r~ve~Yf~aaa~~fEPe~s~~Ri~~aK~~~L~tviDD~f 606 (821)
||+|||+|||+||++||+|++++++||+++|| ++.+.+|+|++.+||+.+|++|.|+.+..|+++||..+++.++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 79999999999999999999999999999999 88999999999999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHhhhhhhhhhhcccCCCchhhHhHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHH-
Q 003417 607 DKQKDSCKQRRAFVREFRNCISAWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGR-DIGGNLREAWEKWLT- 684 (821)
Q Consensus 607 D~ygts~eEl~~f~~~f~~~~~~wD~~~~~~lp~~~~~k~~f~~aL~~t~nei~~~~~~~~g~-~i~~~L~~~W~~l~~- 684 (821)
|..|+ .++++.|++++.++ +...+..+|.+ .+.++ .++.++++++...+.+.+++ ++.+++++.|.+++.
T Consensus 81 D~~~~-~~~~~~l~~~~~~~----~~~~~~~~~~~--~~~~~-~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (270)
T PF03936_consen 81 DDGGS-AEELEALTDAVERW----DPNSGDPLPDP--DKPLF-RALADIWNRIAARMSPAQRRRDQIKRFRNSWREYLNA 152 (270)
T ss_dssp HTTSH-HHHHHHHHHHHHHT----SSGGGGGSTHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-hHHHHHHHHHHhcc----cccccccccch--hHHHH-HHHHHHHHHHHHHhhhhhcccHHhhHHHHHHHHHHHH
Confidence 99997 88888877755544 33333444444 78888 99999999999999998875 489999999999997
Q ss_pred -----HHhhCCCccc------------chHHHHHHHHHhcc---CcccchhhcCChhHHHHHHHHHHHhhhhhhhHHHHh
Q 003417 685 -----TWQDDGNSHW------------GVAELLVQTINLSA---GRLLSEELLCHPEYARLSYLTNRICHTLGHYHKQKV 744 (821)
Q Consensus 685 -----~W~~eg~~~~------------~~~~llv~~~~l~~---G~~l~eel~~~p~~~~l~~li~Rl~~DL~t~~~Ek~ 744 (821)
+|...|++|+ |....+....+.++ |+...+.+..+|.+.+++..+++++|||-++++|..
T Consensus 153 ~~~e~~~~~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE~~ 232 (270)
T PF03936_consen 153 YLWEARWRERGRIPSLEEYLEMRRHTSGVYPCLALIEFALEFALGELPPEVLEHPPMLRRLAADIIRLVNDLYSYKKEIA 232 (270)
T ss_dssp HHHHHHHHHTTS--SHHHHHHHHHHHTSHHHHHHHHHHHCSSCHTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCHHHHHHhccccccccHHHHHHHHhCCCccccccHHHHHhchHHHHHHHHHHHHhcccchhhcchh
Confidence 4788888876 22222322222221 222223355667899999999999999999999999
Q ss_pred hcccc-----ccccch
Q 003417 745 QVNRN-----NNIGNN 755 (821)
Q Consensus 745 ~G~~~-----YmkE~~ 755 (821)
+|+.. +|++++
T Consensus 233 ~g~~~N~v~~l~~~~~ 248 (270)
T PF03936_consen 233 RGDVHNLVVVLMNEHG 248 (270)
T ss_dssp TTSCCSHHHHHHHHHT
T ss_pred hcccccHHHHhhhhcC
Confidence 99874 777654
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=99.93 E-value=3.3e-24 Score=229.39 Aligned_cols=248 Identities=24% Similarity=0.334 Sum_probs=204.9
Q ss_pred chhhhHHHHHHHHHhcCCCcCC-cchhhHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhhhhhhccCCCcHHHHHHHH
Q 003417 542 VHRTEWDSLQKWYAACKLDKFG-ITRRALLLAYFVASASIYEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFV 620 (821)
Q Consensus 542 ~hq~El~~l~rWw~e~~l~~l~-faR~r~ve~Yf~aaa~~fEPe~s~~Ri~~aK~~~L~tviDD~fD~ygts~eEl~~f~ 620 (821)
.||+|++++++||+++||...+ ++|.+...+|+|+++++|+|+.++.|+++||.++++.++||+||.+|+ .+|++.|+
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~-~~~~~~~~ 79 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGT-LEELELFT 79 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCC-HHHHHHHH
Confidence 5999999999999999997555 999999999999999999999999999999999999999999999998 89998988
Q ss_pred HHHHhhhhhhhhhhcccCCCchhhHhHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH------HHhhCCCccc
Q 003417 621 REFRNCISAWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLT------TWQDDGNSHW 694 (821)
Q Consensus 621 ~~f~~~~~~wD~~~~~~lp~~~~~k~~f~~aL~~t~nei~~~~~~~~g~~i~~~L~~~W~~l~~------~W~~eg~~~~ 694 (821)
+.++ +|+...+..+|.+ ++.++ .+++++.+++...+.+.+|+.....+++.|.+++. +|...+++|+
T Consensus 80 ~~~~----~~~~~~~~~~p~~--~~~~~-~~l~d~~~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~ 152 (284)
T cd00868 80 EAVE----RWDISAIDELPEY--MKPVF-KALYDLVNEIEEELAKEGGSESLPYLKEAWKDLLRAYLVEAKWANEGYVPS 152 (284)
T ss_pred HHHH----hcChhhhhhCCHH--HHHHH-HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 7555 5555556667776 88888 99999999999999998998999999999999997 4777888875
Q ss_pred ch-----------HHHHHHHHHhccCcccch-hhcCChh---HHHHHHHHHHHhhhhhhhHHHHhhcccc-----ccccc
Q 003417 695 GV-----------AELLVQTINLSAGRLLSE-ELLCHPE---YARLSYLTNRICHTLGHYHKQKVQVNRN-----NNIGN 754 (821)
Q Consensus 695 ~~-----------~~llv~~~~l~~G~~l~e-el~~~p~---~~~l~~li~Rl~~DL~t~~~Ek~~G~~~-----YmkE~ 754 (821)
.. ....+..+.+..|..+++ ++..+|. +.+.+..+.+++||+.+|++|..+|+.. ||+++
T Consensus 153 ~~eYl~~R~~~~g~~~~~~l~~~~~g~~l~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~N~v~vl~~~~ 232 (284)
T cd00868 153 FEEYLENRRVSIGYPPLLALSFLGMGDILPEEAFEWLPSYPKLVRASSTIGRLLNDIASYEKEIARGEVANSVECYMKEY 232 (284)
T ss_pred HHHHHHhceehhhHHHHHHHHHHHcCCCCCHHHHHHhhhhHHHHHHHHHHHHHhccchHHHHHHccCCcccHHHHHHhcc
Confidence 11 112233333444777887 5655655 4566678889999999999999988763 77776
Q ss_pred h-------hhhhhcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 003417 755 N-------RITALSVEPDMQELVQLVLQNSSSGIGSDVKQTFLTVAKSFYY 798 (821)
Q Consensus 755 ~-------~~i~~~iE~~~rEL~qlvl~~~~~~vp~~~Kq~flnvaR~fyY 798 (821)
+ ..+..++++.++++++++.+.. ++.++.+++.+.+++|..++
T Consensus 233 ~~~~~eA~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~ 282 (284)
T cd00868 233 GVSEEEALEELRKMIEEAWKELNEEVLKLS-SDVPRAVLETLLNLARGIYV 282 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhhhh
Confidence 4 4677889999999999888643 35789999999999998764
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=99.32 E-value=2.2e-11 Score=132.53 Aligned_cols=195 Identities=12% Similarity=0.069 Sum_probs=143.0
Q ss_pred HHHHHHHhcCCCcCCcchhhHHHHHHHHhhcccCCcchhHHHHHH-HHHHHHHhhhhhhccCC-CcHHHHHHHHHHHHhh
Q 003417 549 SLQKWYAACKLDKFGITRRALLLAYFVASASIYEPARWQERIAWA-KTAVLVETITSYFDKQK-DSCKQRRAFVREFRNC 626 (821)
Q Consensus 549 ~l~rWw~e~~l~~l~faR~r~ve~Yf~aaa~~fEPe~s~~Ri~~a-K~~~L~tviDD~fD~yg-ts~eEl~~f~~~f~~~ 626 (821)
+...|.++.|+-.=+.+|++.++++|+..+..+.|+.+.+|+.++ +..+++.++||.||..| + .++++.+++.+.++
T Consensus 18 ~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~-~~~~~~~~~~~~~~ 96 (303)
T cd00687 18 EYLEWVLEEMLIPSEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKS-PEDGEAGVTRLLDI 96 (303)
T ss_pred HHHHHHHHcCCCCcchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccC-HHHHHHHHHHHHhc
Confidence 467899988764445799999999999999999999999999665 99999999999999985 5 99999998877655
Q ss_pred hhhhhhhhcccCCCchhhHhHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH------HHhhCCCcccc-----
Q 003417 627 ISAWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLT------TWQDDGNSHWG----- 695 (821)
Q Consensus 627 ~~~wD~~~~~~lp~~~~~k~~f~~aL~~t~nei~~~~~~~~g~~i~~~L~~~W~~l~~------~W~~eg~~~~~----- 695 (821)
.... .... |.. ...+. .++.++...+...+. ..-...+++.|.+++. +|..++++|+-
T Consensus 97 ~~~~---~~~~-~~~--~~p~~-~~~~d~~~r~~~~~~----~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~ 165 (303)
T cd00687 97 LRGD---GLDS-PDD--ATPLE-FGLADLWRRTLARMS----AEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLE 165 (303)
T ss_pred cCCC---CCCC-CCC--CCHHH-HHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHH
Confidence 4321 1000 122 46666 788888877765442 3345778888888886 47778888751
Q ss_pred ------hHHHHHHHHHhccCcccchhhcCChh---HHHHHHHHHHHhhhhhhhHHHH-hhccc-c----ccccch
Q 003417 696 ------VAELLVQTINLSAGRLLSEELLCHPE---YARLSYLTNRICHTLGHYHKQK-VQVNR-N----NNIGNN 755 (821)
Q Consensus 696 ------~~~llv~~~~l~~G~~l~eel~~~p~---~~~l~~li~Rl~~DL~t~~~Ek-~~G~~-~----YmkE~~ 755 (821)
+...++..+.+..|..+++++..+|. +.+++..+.+++|||.+|++|. .+|+. + +|++++
T Consensus 166 ~R~~~~g~~~~~~l~~~~~g~~lp~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE~~~~g~~~N~V~vl~~~~g 240 (303)
T cd00687 166 MRRFNIGADPCLGLSEFIGGPEVPAAVRLDPVMRALEALASDAIALVNDIYSYEKEIKANGEVHNLVKVLAEEHG 240 (303)
T ss_pred HhhhcccccccHHHHHHhcCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCccchHHHHHHHHcC
Confidence 11122222333346678888888887 5677788888999999999999 77764 3 777765
No 8
>PLN02150 terpene synthase/cyclase family protein
Probab=99.10 E-value=1.3e-10 Score=106.11 Aligned_cols=77 Identities=10% Similarity=0.142 Sum_probs=65.6
Q ss_pred Hhhcccc-----ccccchh-------hhhhcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH--H-hh---ccCCh
Q 003417 743 KVQVNRN-----NNIGNNR-------ITALSVEPDMQELVQLVLQNSSSGIGSDVKQTFLTVAKSF--Y-YC---AYCDA 804 (821)
Q Consensus 743 k~~G~~~-----YmkE~~~-------~i~~~iE~~~rEL~qlvl~~~~~~vp~~~Kq~flnvaR~f--y-Y~---a~~~~ 804 (821)
++||+++ ||+|++. +++++|++.||++++++++. +.+|.++.+.++|+||+. . |. +|+.+
T Consensus 1 ~~rg~vaSsIeCYMke~g~seeeA~~~i~~li~~~WK~iN~e~l~~--~~~p~~~~~~~~NlaR~~~~~~Y~~~Dg~t~~ 78 (96)
T PLN02150 1 MRRGEVANGVNCYMKQHGVTKEEAVSELKKMIRDNYKIVMEEFLTI--KDVPRPVLVRCLNLARLIDVYCYNEGDGFTYP 78 (96)
T ss_pred CCCCcchHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHhheecCCCCCCCC
Confidence 4678886 9999963 78899999999999999973 579999999999999974 4 65 57744
Q ss_pred -HHHHHHHhhccccccCC
Q 003417 805 -ETINSHIGKVLFQTVDI 821 (821)
Q Consensus 805 -~~ik~hI~kVLfEPI~i 821 (821)
..+|++|.+||++||+|
T Consensus 79 ~~~~K~~I~sLlv~pi~i 96 (96)
T PLN02150 79 HGKLKDLITSLFFHPLPL 96 (96)
T ss_pred cHHHHHHHHHHhccCCCC
Confidence 47999999999999986
No 9
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=98.34 E-value=6.1e-07 Score=91.66 Aligned_cols=161 Identities=16% Similarity=0.037 Sum_probs=99.9
Q ss_pred HHhhcccCCcchhHHHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHHHHhhhhhhhhhhcccCCCchhhHhHHHHHHHH
Q 003417 575 VASASIYEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWDYINRRRWDSNKKGERFAGKTLLG 654 (821)
Q Consensus 575 ~aaa~~fEPe~s~~Ri~~aK~~~L~tviDD~fD~ygts~eEl~~f~~~f~~~~~~wD~~~~~~lp~~~~~k~~f~~aL~~ 654 (821)
++++++|+|+++..|.++++..++..++||++|..++ ..+.......+ . ..+.|.. +...+ ..+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~-~~~~~~~~~~~----~------~~~~~~~--~~~~~-~~~~~ 67 (243)
T cd00385 2 RPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGT-RRGLPTAHLAV----A------IDGLPEA--ILAGD-LLLAD 67 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC-CCCchhhhhhH----H------hcCchHH--HHHHH-HHHHH
Confidence 5678899999999999999999999999999999987 56555543221 1 1112222 45555 77777
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHH------HhhCCCcccchHH-----------HHHHHHHhccCcccch--h
Q 003417 655 TLNHIALDALVANGRDIGGNLREAWEKWLTT------WQDDGNSHWGVAE-----------LLVQTINLSAGRLLSE--E 715 (821)
Q Consensus 655 t~nei~~~~~~~~g~~i~~~L~~~W~~l~~~------W~~eg~~~~~~~~-----------llv~~~~l~~G~~l~e--e 715 (821)
.++++..... ..+...+.+.|.+++.. |... ..|+ ..+ ++...+.+.++....+ .
T Consensus 68 ~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~d~~~~~~-~~~t-~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 141 (243)
T cd00385 68 AFEELAREGS----PEALEILAEALLDLLEGQLLDLKWRRE-YVPT-LEEYLEYCRYKTAGLVGALCLLGAGLSGGEAEL 141 (243)
T ss_pred HHHHHHhCCC----HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCC-HHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHH
Confidence 7777664321 34577888899988873 4433 3333 111 1111111111111111 1
Q ss_pred hcCChhHHHHHHHHHHHhhhhhhhHHHHhh--cccc----ccccch
Q 003417 716 LLCHPEYARLSYLTNRICHTLGHYHKQKVQ--VNRN----NNIGNN 755 (821)
Q Consensus 716 l~~~p~~~~l~~li~Rl~~DL~t~~~Ek~~--G~~~----YmkE~~ 755 (821)
......+......+..+.||+.++..|.++ |... +|++++
T Consensus 142 ~~~~~~~~~~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~~ 187 (243)
T cd00385 142 LEALRKLGRALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEYG 187 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHhC
Confidence 112345566777888899999999999888 4443 666654
No 10
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=97.92 E-value=0.00049 Score=76.28 Aligned_cols=53 Identities=21% Similarity=0.382 Sum_probs=42.7
Q ss_pred hHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhcc---CchhhhhHHHHHHHh
Q 003417 145 SSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNI---HHDKCHKGLLFFKEN 202 (821)
Q Consensus 145 ~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~---~~~~i~~Gl~fl~~n 202 (821)
..++||+++|.+||+|+... --+.-|..|+.||..-.. ..+.++||+.||.+.
T Consensus 3 ~~~~~L~~~Q~~dG~W~~~~-----~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~ 58 (348)
T cd02889 3 RALDFLLSLQAPDGHWPGEY-----SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKS 58 (348)
T ss_pred hHHHHHHHhccCCCCccccC-----CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhc
Confidence 46899999999999998652 246778889999987554 245799999999984
No 11
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=97.80 E-value=0.0016 Score=78.50 Aligned_cols=280 Identities=18% Similarity=0.191 Sum_probs=140.7
Q ss_pred CCcccchhhhhh-hhccccCCCCCCCCChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccCc--hhhh
Q 003417 117 GEISVSAYDTAW-VALVEDIQGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIHH--DKCH 193 (821)
Q Consensus 117 g~~S~S~YDTAW-VAmvp~~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~~--~~i~ 193 (821)
|+++.++-=||= |-+---++-...+.-.+..+||++.|++|||||....- .--|..|.=+-+||+-=+..+ .++.
T Consensus 37 ~e~~~~~~~~a~~i~~~~~~g~~~~~~~~~~~~~l~~~Q~~DGgWg~~~~~--~~~~~~Tv~~Y~aLrl~G~~~~~~~m~ 114 (635)
T TIGR01507 37 GELESNVTIEAEYVLLCHILDRVDRDRMEKIRNYLLHEQREDGTWALYPGG--PGDLSTTVEAYVALKYIGMSRDEPPMQ 114 (635)
T ss_pred cccCCcchhcHHHHHHHHHHCCCcHHHHHHHHHHHHHhccCCCCccCccCC--CcchhHHHHHHHHHHHhCCCCCcHHHH
Confidence 566555555554 32221122122334567789999999999999965221 124788888888998766554 3688
Q ss_pred hHHHHHHHhH-----hh-------hhccC--CCCCCceEeEe---------------------hhHHHHHHHhCCCCCCC
Q 003417 194 KGLLFFKENI-----SK-------LENEN--DEHMPIGFEVA---------------------FPSLLEIARSLDIEVPY 238 (821)
Q Consensus 194 ~Gl~fl~~nl-----~~-------~~~~~--~~~~~vgfeii---------------------~P~Ll~~a~~lgl~~p~ 238 (821)
||.+||.+.= .. +.+.. +...|+=.||+ +|-++=..++--..+|
T Consensus 115 rAr~~I~~~GG~~~~~~~tk~~LAl~G~~~W~~~~~~P~El~llP~~~p~~~~~~~~~~R~~~~P~~~l~~~r~~~~~~- 193 (635)
T TIGR01507 115 KALRFIQSQGGIESSRVFTRMWLALVGEYPWRGVPMVPPEIMLLPKRFPFNIYEFSSWARATVVPLSIVCSRKPVFPLP- 193 (635)
T ss_pred HHHHHHHHcCCcccccHHHHHHHHHcCCcCcccCCCCCHHHHhCCCcCCccHHHHHHHHHHHHHHHHHHhcCCCccCCC-
Confidence 9999998631 00 00000 01112222332 2323332332222222
Q ss_pred CChhhHHHHHHhhhhhc-CCCCc-c---ccccchhHHHHHhcCCC--cc-------hHHHhhcccCCCcccC-CccHHHH
Q 003417 239 DSPVLQKIYDKRNLKLT-RIPKD-I---MHNVPTTLLHSLEGMPD--LN-------WQKLLKLQCQDGSFLF-SPSSTAY 303 (821)
Q Consensus 239 ~~~~l~~l~~~r~~kL~-r~~~~-~---~~~~p~~llhslEgl~~--~d-------~~~v~~~~~~~GS~~~-SPSaTAa 303 (821)
....+++|+..-..+.. ++++. . +...=..++|.+|.+.. +- .+-+...|..+|+... .| .+..
T Consensus 194 ~~~~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~lr~~A~~~a~~~i~~~~e~~g~~~~i~p-~~~~ 272 (635)
T TIGR01507 194 ERARVPELYETDVPKPRRRGAKGGTGWGIFDALDRALHGYEKLSVHPFRRAAEIRALDWLLERQAGDGSWGGIQP-AMFN 272 (635)
T ss_pred cccChHhhcCCChHHhcccCCccCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHcCCCceeecch-HHHH
Confidence 11113444331111111 01100 0 00000134566665542 10 0112233556775543 34 3322
Q ss_pred HHh----cc--Cch----hHHHHHHHHHHHhcCCCCCC-CccChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhh---
Q 003417 304 ALM----QT--KDE----NCLKYLTKAVQRFNGGVPNV-YPVDIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRY--- 369 (821)
Q Consensus 304 ~l~----~~--~d~----~~l~YL~~~v~~~~g~VP~~-yP~d~fe~Lw~VD~LqRLGIs~~F~~EI~~~Ld~i~~~--- 369 (821)
.++ .. .|+ +++++|++-+-...++.... +-..+..-.++|-.|+.+|++.. .+.|+...+.+-+.
T Consensus 273 ~l~~l~~~g~~~~~~~~~~~l~~l~~~~~~~~~g~~~~~~~s~vWDTa~ai~AL~~ag~~~~-~p~l~kA~~~L~~~Qi~ 351 (635)
T TIGR01507 273 ALIALKILGMTQHDAFIKLGWEGIDLYGVELDDSWMFQACVSPVWDTALAVLALREAGLPAD-HDALVKAGEWLLDKQIT 351 (635)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHheEecCCceEecCCCCcHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhhccc
Confidence 221 11 233 47777766554444443211 12356788899999999999754 57788777766443
Q ss_pred ----h-------hcccccccc-CCCCCChHHHHHHHHHHHHcCC
Q 003417 370 ----W-------TEEGICWAR-NTRVQDLDDTSMGFRLLRLHGY 401 (821)
Q Consensus 370 ----~-------~~~gi~~~~-~~~~~DlddTAlaFrlLR~~Gy 401 (821)
| ...|-++.. +...+|+||||.++.+|...|-
T Consensus 352 ~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~ 395 (635)
T TIGR01507 352 VPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRL 395 (635)
T ss_pred CCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCC
Confidence 1 011222221 2225899999999999999863
No 12
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=97.70 E-value=7.3e-05 Score=68.90 Aligned_cols=80 Identities=20% Similarity=0.305 Sum_probs=37.8
Q ss_pred cccchhhhhhhhccccC--CCCCCCCChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHH--HHHHHHhhccCchhhhh
Q 003417 119 ISVSAYDTAWVALVEDI--QGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLA--CVVALRSWNIHHDKCHK 194 (821)
Q Consensus 119 ~S~S~YDTAWVAmvp~~--~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA--~vlAL~~w~~~~~~i~~ 194 (821)
.....+-|+|++++-.. +....+..-.+++||+++|.+||+|+..+. +....|.+ +++++..+....+.++|
T Consensus 22 ~~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~----~~~~~t~~~~~~l~~~~~~~~~~~~~r 97 (109)
T PF13243_consen 22 WGSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGG----EYVSMTAAAIAALALAGVYPDDEAVER 97 (109)
T ss_dssp -------------------TS-SSBSSHHHHHHHHH---TTS--S-TS------HHHHHHHHHHHHHHHHTT--HHHHHH
T ss_pred ccccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCC----CCHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 34567889997666443 234578889999999999999999996632 12334444 44444555556678999
Q ss_pred HHHHHHHh
Q 003417 195 GLLFFKEN 202 (821)
Q Consensus 195 Gl~fl~~n 202 (821)
|++||.++
T Consensus 98 ~~~wi~~~ 105 (109)
T PF13243_consen 98 GLEWILSH 105 (109)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99999986
No 13
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=97.64 E-value=0.024 Score=68.65 Aligned_cols=275 Identities=21% Similarity=0.224 Sum_probs=143.8
Q ss_pred CChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccCc--hhhhhHHHHHHHhH-----hh-------hh
Q 003417 142 QFPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIHH--DKCHKGLLFFKENI-----SK-------LE 207 (821)
Q Consensus 142 ~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~~--~~i~~Gl~fl~~nl-----~~-------~~ 207 (821)
.-.+.++||++.|++||+||....- .--+..|.=+-+||+-=...+ .++.||.+||.+.= .. +.
T Consensus 47 ~~~~~~~~l~~~q~~dGgw~~~~~~--~~~~~~T~~~Y~aLrl~G~~~~~~~m~~Ar~~i~~~GG~~~~~~~~k~~La~~ 124 (634)
T cd02892 47 HRKEIARYLRNHQNPDGGWGLHHEG--PSTMFGTVLNYVALRLLGVSPDDPHMVKARNWILSHGGAARIPVWGKIWLALL 124 (634)
T ss_pred HHHHHHHHHHHhccCCCCccCCCCC--CcchHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcCCcccccHHHHHHHHHc
Confidence 3567899999999999999965211 124778888888888765543 46899999998631 00 00
Q ss_pred ccC--CCCCCceEeEe---------------------hhHHHHHHHhCCCCCCCCChh---hHHHHHHhhhhh----cCC
Q 003417 208 NEN--DEHMPIGFEVA---------------------FPSLLEIARSLDIEVPYDSPV---LQKIYDKRNLKL----TRI 257 (821)
Q Consensus 208 ~~~--~~~~~vgfeii---------------------~P~Ll~~a~~lgl~~p~~~~~---l~~l~~~r~~kL----~r~ 257 (821)
+.. +...|+=.|++ +|-++=.+++.- .|...+. +++|+..--.++ .|-
T Consensus 125 G~~~W~~~~~~P~El~llP~~~p~~~~~~~~~~R~~~~p~~~l~~~r~~--~~~~~~~~~~~~el~~~~~~~~~~~~~~~ 202 (634)
T cd02892 125 GVYPWEGVPPLPPELWLLPSWLPFHPYKFWCWARTVYVPMSYLYGKRPV--APITPLVLSLRDELYVEPYEKINWYKHRN 202 (634)
T ss_pred CccccccCCCCCHhHHhcCCcCCccHHHHHHHHHHHHHhHHHHhcCCcc--cCCCCccccchHHhCCCCccccccccccc
Confidence 000 01122223333 222222222221 1111111 222211000000 000
Q ss_pred CCccccc-cc------hhHHHHHhcCCC-cchH--------HHhhcccCCCcccCCccHHHHHHhc----c-Cch----h
Q 003417 258 PKDIMHN-VP------TTLLHSLEGMPD-LNWQ--------KLLKLQCQDGSFLFSPSSTAYALMQ----T-KDE----N 312 (821)
Q Consensus 258 ~~~~~~~-~p------~~llhslEgl~~-~d~~--------~v~~~~~~~GS~~~SPSaTAa~l~~----~-~d~----~ 312 (821)
..+..+. .. ..++|.+|.+.. .-.+ -+..-|..+|++..-|.+++...|. . .|+ +
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~a~~~~~~~i~~~q~~~g~~~~~~~~~~l~~lal~~~g~~~~~~~~~ 282 (634)
T cd02892 203 DLYDYRPPWQRLFDALDRLLHWYEPLPPKPLRRKALRKAYEWILYRDENTGYLGIIPPPKANNMLALWVLGYPDSPAFKR 282 (634)
T ss_pred ccccCCCChHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCCceeeeehHHHHHHHHHHHcCCCCCHHHHH
Confidence 0000110 00 123566665442 1111 1333467789999988888775442 1 233 3
Q ss_pred HHHHHHHHHHHh-cCCCCCCC-ccChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhh--ccc-----------ccc
Q 003417 313 CLKYLTKAVQRF-NGGVPNVY-PVDIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWT--EEG-----------ICW 377 (821)
Q Consensus 313 ~l~YL~~~v~~~-~g~VP~~y-P~d~fe~Lw~VD~LqRLGIs~~F~~EI~~~Ld~i~~~~~--~~g-----------i~~ 377 (821)
+++++.+-+-.. +|...+.+ +..+.....++-.|...|++..+.+.|+..++.+-+.=. ..| =||
T Consensus 283 ~l~~l~~~~~~~~~g~~~~~~~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW 362 (634)
T cd02892 283 HLERIDDFLWLGPEGMKMCQTNGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLRKGGW 362 (634)
T ss_pred HHHHHHhcEEEecCCcEEEcCCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCCCCCC
Confidence 445554433111 33322221 455788899999999999986678888888887744311 111 122
Q ss_pred cc---CCCCCChHHHHHHHHHHHHcCCc------cchhh-------hhccc-cCCceeec
Q 003417 378 AR---NTRVQDLDDTSMGFRLLRLHGYD------VSAEA-------FEHFE-KGGEFFCF 420 (821)
Q Consensus 378 ~~---~~~~~DlddTAlaFrlLR~~Gy~------VS~dv-------f~~F~-~~g~F~~~ 420 (821)
+- +...+|+|+||.+.++|...+.. ++.+. +.... .+|.|..|
T Consensus 363 ~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y 422 (634)
T cd02892 363 AFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAF 422 (634)
T ss_pred CCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeee
Confidence 21 11236899999999999988754 44433 22223 57778765
No 14
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=97.61 E-value=2.1e-05 Score=72.54 Aligned_cols=55 Identities=24% Similarity=0.405 Sum_probs=12.4
Q ss_pred hHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccC--chhhhhHHHHHHHhH
Q 003417 145 SSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIH--HDKCHKGLLFFKENI 203 (821)
Q Consensus 145 ~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~--~~~i~~Gl~fl~~nl 203 (821)
++++||+++|++||||+.+.. +....|.+++.||+..+.. .++|.||+.||.++-
T Consensus 3 ~~~~~l~~~Q~~dG~W~~~~~----~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q 59 (109)
T PF13243_consen 3 RAAEWLLSQQNPDGSWGYNWG----SDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQ 59 (109)
T ss_dssp ------------------------------------------TS-SSBSSHHHHHHHHH--
T ss_pred ccccccccccccccccccccc----ccccccccccccccccCCCCcHHHHHHHHHHHHHhc
Confidence 478999999999999986622 4689999999999998753 467999999999853
No 15
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=97.54 E-value=0.0052 Score=74.22 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=44.9
Q ss_pred ChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccCc--hhhhhHHHHHHHh
Q 003417 143 FPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIHH--DKCHKGLLFFKEN 202 (821)
Q Consensus 143 Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~~--~~i~~Gl~fl~~n 202 (821)
-.+.++||++.|++||+||....- .--+..|.=+-+||+-=...+ .++.||.+||.+.
T Consensus 44 ~~~~~~yl~~~Q~~dGgWgl~~~~--~~~~~~T~~~Y~aLrl~G~~~~~~~~~rAr~~i~~~ 103 (634)
T TIGR03463 44 RAGIIRHFENSQLADGAWGLHPEA--PGQVFTTVLNYVALRLLGVGKEDAGLARARQWLHAQ 103 (634)
T ss_pred HHHHHHHHHHhccCCCCccCCCCC--CcchHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999965211 124788888889998765543 4699999999987
No 16
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=97.45 E-value=0.014 Score=70.34 Aligned_cols=271 Identities=17% Similarity=0.206 Sum_probs=139.3
Q ss_pred CCChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccCc--hhhhhHHHHHHHhH-------------h-
Q 003417 141 PQFPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIHH--DKCHKGLLFFKENI-------------S- 204 (821)
Q Consensus 141 p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~~--~~i~~Gl~fl~~nl-------------~- 204 (821)
+.--+.++||++.|++||+||....- .--|..|.=+-+||+--...+ .++.||.+||.+.= +
T Consensus 46 ~~~~~~~~~l~~~Q~~DGgW~~~~~~--~~~~~~Tv~aY~aLrl~G~~~~~~~m~~Ar~~i~~~GG~~~~~~~~k~~La~ 123 (621)
T TIGR01787 46 GYREKIVRYLRHHQNEDGGWGLHIGG--KSTVFGTVLAYVALKILGMSPDDPAMVRARNFILKQGGAVASPVFTKFWLAL 123 (621)
T ss_pred HHHHHHHHHHHHhcCCCCCeeCCcCC--CcchHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHcCCcccCchHHHHHHHH
Confidence 34568899999999999999954211 124788888889998765543 46899999998631 1
Q ss_pred ----hhhccCCCCCCceEeEe-hh------------------HHHHHHHhCCCCCCCCChhhHHHHHHhhhhhcCC----
Q 003417 205 ----KLENENDEHMPIGFEVA-FP------------------SLLEIARSLDIEVPYDSPVLQKIYDKRNLKLTRI---- 257 (821)
Q Consensus 205 ----~~~~~~~~~~~vgfeii-~P------------------~Ll~~a~~lgl~~p~~~~~l~~l~~~r~~kL~r~---- 257 (821)
.|. ...|+=.||+ +| -.+-++...-...|.+ .+++|+..- .+..+.
T Consensus 124 ~G~~~W~----~~~~~P~El~llP~~~p~~~~~~w~~~~~v~l~~~~~~~~~~~~~~~--~~~el~~~~-~~~~~~~~~~ 196 (621)
T TIGR01787 124 LGVYPWE----GVPPLPPEIMLLPKWLPIHPSKSWCRCRMVYLPMSYCYGERLSAPID--PREELYVED-DSIRAQRNNV 196 (621)
T ss_pred cCccccc----cCCCCCHhHHhcCcccCcCcchhhhhhhhHHHHHHHHcCccccCCCC--cchhhcCCC-cchhhccCCC
Confidence 121 1122223332 22 2332222221222211 145554322 111111
Q ss_pred CCccccccc----hhHHHHHhcCCC--c-c-------hHHHhhcccCCCcccCCccHHHHHHh---ccCch----hHHHH
Q 003417 258 PKDIMHNVP----TTLLHSLEGMPD--L-N-------WQKLLKLQCQDGSFLFSPSSTAYALM---QTKDE----NCLKY 316 (821)
Q Consensus 258 ~~~~~~~~p----~~llhslEgl~~--~-d-------~~~v~~~~~~~GS~~~SPSaTAa~l~---~~~d~----~~l~Y 316 (821)
+++.++. | ..+++.++.+.. + . -+.++++|..+|.+..-..+++...+ ...|+ ++++.
T Consensus 197 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~g~~~~i~~~~~~~al~~~g~~d~p~~~~~l~~ 275 (621)
T TIGR01787 197 AKEDLYT-PHSWLLRALYGLLNLFYHPFLRKALRKRALQWLYEHIAADGSIGPISKAMAMLALWFLDGPNSPAFQKHLQR 275 (621)
T ss_pred Ccccccc-cHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhccCCCchhHhHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 1111111 1 133445544211 1 1 12255666677765554334433222 11243 44555
Q ss_pred HHHHHH-HhcCCCCCCCccChhHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHhhhh-c---------------ccccc
Q 003417 317 LTKAVQ-RFNGGVPNVYPVDIFEHLWAVDRLQRLGI--SRYFQPEIKECLDYVYRYWT-E---------------EGICW 377 (821)
Q Consensus 317 L~~~v~-~~~g~VP~~yP~d~fe~Lw~VD~LqRLGI--s~~F~~EI~~~Ld~i~~~~~-~---------------~gi~~ 377 (821)
|+..+- .-+|.-...++..+....++|-.|...|+ ..-+.+.|+..++.+-+.=. + .|-++
T Consensus 276 l~~~~~~~~dg~~~q~~~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~f 355 (621)
T TIGR01787 276 IDDYLWLQLDGMKMQGTGSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAF 355 (621)
T ss_pred HhhcEEEeCCccEEecCCCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccC
Confidence 544321 11232222346778999999999999997 33567788888877644211 1 11111
Q ss_pred c-cCCCCCChHHHHHHHHHHHHcC---Cccchhh-------hhccc-cCCceeecc
Q 003417 378 A-RNTRVQDLDDTSMGFRLLRLHG---YDVSAEA-------FEHFE-KGGEFFCFV 421 (821)
Q Consensus 378 ~-~~~~~~DlddTAlaFrlLR~~G---y~VS~dv-------f~~F~-~~g~F~~~~ 421 (821)
. .+...+|+|||+.+...+.+.. ..++.+. +.... ++|.|.+|.
T Consensus 356 s~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~ 411 (621)
T TIGR01787 356 SFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYD 411 (621)
T ss_pred ccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeec
Confidence 1 1223469999999875543333 3444443 33333 788887663
No 17
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=97.11 E-value=0.016 Score=70.03 Aligned_cols=247 Identities=19% Similarity=0.243 Sum_probs=134.4
Q ss_pred CCChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhcc-CchhhhhHHHHHHHhHhhhhccCCCCCCceEe
Q 003417 141 PQFPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNI-HHDKCHKGLLFFKENISKLENENDEHMPIGFE 219 (821)
Q Consensus 141 p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~-~~~~i~~Gl~fl~~nl~~~~~~~~~~~~vgfe 219 (821)
+.-+.|++||++.|..||+||.-. ..-+++||+.-+. .++.++||+++|++-++.-.+.. -..+.|-.
T Consensus 227 ~a~~~a~~~~~~~~~~~g~~~~i~----------~~~~~~al~~~g~~d~p~~~~~l~~l~~~~~~~~dg~-~~q~~~s~ 295 (621)
T TIGR01787 227 ALRKRALQWLYEHIAADGSIGPIS----------KAMAMLALWFLDGPNSPAFQKHLQRIDDYLWLQLDGM-KMQGTGSQ 295 (621)
T ss_pred HHHHHHHHHHHHHhccCCCchhHh----------HHHHHHHHHHcCCCCCHHHHHHHHHHhhcEEEeCCcc-EEecCCCc
Confidence 346789999999999999998652 1127888887664 34679999999988654432210 00011322
Q ss_pred EehhHHHHHHH-hCCC-CCCCCChhhHHHHH-HhhhhhcC-CC------------Ccc-----ccccc----hhH-HHHH
Q 003417 220 VAFPSLLEIAR-SLDI-EVPYDSPVLQKIYD-KRNLKLTR-IP------------KDI-----MHNVP----TTL-LHSL 273 (821)
Q Consensus 220 ii~P~Ll~~a~-~lgl-~~p~~~~~l~~l~~-~r~~kL~r-~~------------~~~-----~~~~p----~~l-lhsl 273 (821)
+-=-++.-.|- +-|+ ..|...+.+..-.+ +.+..... .+ ... -+..| |+. +..+
T Consensus 296 vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~la~ 375 (621)
T TIGR01787 296 VWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVALKA 375 (621)
T ss_pred HHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHHHH
Confidence 22333333332 3453 23333444433221 11111111 00 000 11222 111 1111
Q ss_pred ------------hcCCC-cchHHHhhcccCCCcccC-C------------c--------------cHHHHHHhc---cC-
Q 003417 274 ------------EGMPD-LNWQKLLKLQCQDGSFLF-S------------P--------------SSTAYALMQ---TK- 309 (821)
Q Consensus 274 ------------Egl~~-~d~~~v~~~~~~~GS~~~-S------------P--------------SaTAa~l~~---~~- 309 (821)
|.+.. +|| ++..|..||++.. . | ..|+.+++. .+
T Consensus 376 ~l~~~~~~~~~~~~l~~a~~~--Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~ 453 (621)
T TIGR01787 376 VLLLQEDEHVKRDRLRDAVNW--ILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGH 453 (621)
T ss_pred HHhhcCcccccHHHHHHHHHH--HHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcC
Confidence 12222 344 5667899999852 1 3 578887653 11
Q ss_pred --c------hhHHHHHHHHHHHhcCCCCCCCccC-hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhccccccccC
Q 003417 310 --D------ENCLKYLTKAVQRFNGGVPNVYPVD-IFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARN 380 (821)
Q Consensus 310 --d------~~~l~YL~~~v~~~~g~VP~~yP~d-~fe~Lw~VD~LqRLGIs~~F~~EI~~~Ld~i~~~~~~~gi~~~~~ 380 (821)
+ +++++||.+..+. +|+....+-+. .+....++..|..+|-...-.++|+..++.+-+.-.++| ||+..
T Consensus 454 r~~~~~~~i~rAl~~L~~~Q~~-DGsw~g~wg~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DG-GWge~ 531 (621)
T TIGR01787 454 RADEIRNVLERALEYLRREQRA-DGSWFGRWGVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDG-GWGED 531 (621)
T ss_pred ccHhHHHHHHHHHHHHHHhcCC-CCCCcccCCCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCC-CCCcC
Confidence 1 3678888876654 33322112222 245678899999999754333889999999877643333 23211
Q ss_pred -----------CCCCChHHHHHHHHHHHHcCCc
Q 003417 381 -----------TRVQDLDDTSMGFRLLRLHGYD 402 (821)
Q Consensus 381 -----------~~~~DlddTAlaFrlLR~~Gy~ 402 (821)
...+|+..||.+...|...|..
T Consensus 532 ~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag~~ 564 (621)
T TIGR01787 532 CFSYEDPSYVGSGGSTPSQTGWALMALIAAGEA 564 (621)
T ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHcCcc
Confidence 1135889999999999887754
No 18
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=97.03 E-value=0.017 Score=69.93 Aligned_cols=245 Identities=16% Similarity=0.180 Sum_probs=131.6
Q ss_pred ChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhcc-CchhhhhHHHHHHHhHhhhhcc----CCCCCCce
Q 003417 143 FPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNI-HHDKCHKGLLFFKENISKLENE----NDEHMPIG 217 (821)
Q Consensus 143 Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~-~~~~i~~Gl~fl~~nl~~~~~~----~~~~~~vg 217 (821)
-..+++||+..|.+||+||.. -++|.-+++||..-+. .++.++|++++|.+-++.-.+. .....+++
T Consensus 238 ~~~~~~~i~~~q~~~g~~~~~--------~~~~~l~~lal~~~g~~~~~~~~~~l~~l~~~~~~~~~g~~~~~~~~s~~w 309 (634)
T cd02892 238 LRKAYEWILYRDENTGYLGII--------PPPKANNMLALWVLGYPDSPAFKRHLERIDDFLWLGPEGMKMCQTNGSQVW 309 (634)
T ss_pred HHHHHHHHHHHhcCCCceeee--------ehHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcEEEecCCcEEEcCCCCchH
Confidence 367899999999999999864 2466677888877664 4567999999999866433111 01112221
Q ss_pred EeEehhHHHHHHH-hCCCCCCCCChhhHHHH-HHhhhhhcCCC------------Cccc-----cccc--hhHHHHHhcC
Q 003417 218 FEVAFPSLLEIAR-SLDIEVPYDSPVLQKIY-DKRNLKLTRIP------------KDIM-----HNVP--TTLLHSLEGM 276 (821)
Q Consensus 218 feii~P~Ll~~a~-~lgl~~p~~~~~l~~l~-~~r~~kL~r~~------------~~~~-----~~~p--~~llhslEgl 276 (821)
=-+|.-.|- +.|+. +...+.+.... =+.+....+-+ ..-. +..| .-.+.++.+|
T Consensus 310 ----DTala~~AL~~ag~~-~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL 384 (634)
T cd02892 310 ----DTALAVQALLEAGLA-PEFDPALKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKAL 384 (634)
T ss_pred ----HHHHHHHHHHHcCCC-ccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHH
Confidence 122222222 34543 11223332211 11111111110 1110 1123 1113333333
Q ss_pred CC----------cc---h----HHHhhcccCCCcccC---------------------------CccHHHHHHhc-----
Q 003417 277 PD----------LN---W----QKLLKLQCQDGSFLF---------------------------SPSSTAYALMQ----- 307 (821)
Q Consensus 277 ~~----------~d---~----~~v~~~~~~~GS~~~---------------------------SPSaTAa~l~~----- 307 (821)
.. ++ . +=|+..|..||++.. ++..||++++.
T Consensus 385 ~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~ 464 (634)
T cd02892 385 LRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFG 464 (634)
T ss_pred HHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhc
Confidence 21 01 1 114566888998752 23447776542
Q ss_pred -c-Cc---------hhHHHHHHHHHHHhcCCCCCCCcc-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhcccc
Q 003417 308 -T-KD---------ENCLKYLTKAVQRFNGGVPNVYPV-DIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGI 375 (821)
Q Consensus 308 -~-~d---------~~~l~YL~~~v~~~~g~VP~~yP~-d~fe~Lw~VD~LqRLGIs~~F~~EI~~~Ld~i~~~~~~~gi 375 (821)
. .+ +++++||.+..+. +|+-...+-. ..+...+++..|..+|..+...+.|+..++.+-+.-.++|
T Consensus 465 ~~~~~~r~~i~~~i~rAv~~L~~~Q~~-DGsW~g~wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DG- 542 (634)
T cd02892 465 KLYPGHRREIDPAIRRAVKYLLREQEP-DGSWYGRWGVCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDG- 542 (634)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHccCC-CCCccccCCCccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCC-
Confidence 1 11 2577787776654 3332111111 2356778899999999986567888899998877644444
Q ss_pred ccccC-----------CCCCChHHHHHHHHHHHHcCCc
Q 003417 376 CWARN-----------TRVQDLDDTSMGFRLLRLHGYD 402 (821)
Q Consensus 376 ~~~~~-----------~~~~DlddTAlaFrlLR~~Gy~ 402 (821)
+|+.. ....++..||.|...|-..|..
T Consensus 543 gWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~ 580 (634)
T cd02892 543 GWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEP 580 (634)
T ss_pred CCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 23210 1124678888888888877764
No 19
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=97.02 E-value=0.021 Score=68.96 Aligned_cols=242 Identities=18% Similarity=0.217 Sum_probs=131.3
Q ss_pred ChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhcc--CchhhhhHHHHHHHhHhhhhccCCCCCCc---e
Q 003417 143 FPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNI--HHDKCHKGLLFFKENISKLENENDEHMPI---G 217 (821)
Q Consensus 143 Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~--~~~~i~~Gl~fl~~nl~~~~~~~~~~~~v---g 217 (821)
-..|++||+..|.++|+||...+ +++-+|+||+.-+. .+..+.||+++|++-+..- +. .+.+ |
T Consensus 246 ~~~a~~~i~~~~e~~g~~~~i~p--------~~~~~l~~l~~~g~~~~~~~~~~~l~~l~~~~~~~--~~--g~~~~~~~ 313 (635)
T TIGR01507 246 EIRALDWLLERQAGDGSWGGIQP--------AMFNALIALKILGMTQHDAFIKLGWEGIDLYGVEL--DD--SWMFQACV 313 (635)
T ss_pred HHHHHHHHHHHHcCCCceeecch--------HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHheEec--CC--ceEecCCC
Confidence 36789999999999999987631 55666666665453 3456889999998754432 11 1111 1
Q ss_pred EeEehhHH-HHHHHhCCCCCCCCChhhHH-HHHHhhhhhcCCCCc------------cc----c-ccch--hHHHHHhcC
Q 003417 218 FEVAFPSL-LEIARSLDIEVPYDSPVLQK-IYDKRNLKLTRIPKD------------IM----H-NVPT--TLLHSLEGM 276 (821)
Q Consensus 218 feii~P~L-l~~a~~lgl~~p~~~~~l~~-l~~~r~~kL~r~~~~------------~~----~-~~p~--~llhslEgl 276 (821)
-.+-=-++ +..+.+.|+ +.+.|.++. .--+++.... .+.+ -. . ..|. .-+.+|+||
T Consensus 314 s~vWDTa~ai~AL~~ag~--~~~~p~l~kA~~~L~~~Qi~-~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL 390 (635)
T TIGR01507 314 SPVWDTALAVLALREAGL--PADHDALVKAGEWLLDKQIT-VPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWAL 390 (635)
T ss_pred CcHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHhhccc-CCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHH
Confidence 00001112 222234564 334454432 2222222111 1111 00 1 1231 112344443
Q ss_pred CC----------cchHH----HhhcccCCCcccC-------------------------CccHHHHHHhc---c---Cc-
Q 003417 277 PD----------LNWQK----LLKLQCQDGSFLF-------------------------SPSSTAYALMQ---T---KD- 310 (821)
Q Consensus 277 ~~----------~d~~~----v~~~~~~~GS~~~-------------------------SPSaTAa~l~~---~---~d- 310 (821)
.. -.+++ |+..|..||++.+ +|..||..++. . .+
T Consensus 391 ~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~~ 470 (635)
T TIGR01507 391 NGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDAW 470 (635)
T ss_pred HHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCchh
Confidence 21 02222 5567889998732 34458776542 1 11
Q ss_pred ---hhHHHHHHHHHHHhcCCCCCCCc-cChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhccccccccC------
Q 003417 311 ---ENCLKYLTKAVQRFNGGVPNVYP-VDIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARN------ 380 (821)
Q Consensus 311 ---~~~l~YL~~~v~~~~g~VP~~yP-~d~fe~Lw~VD~LqRLGIs~~F~~EI~~~Ld~i~~~~~~~gi~~~~~------ 380 (821)
.++++||.+..+.-++=... |- -.+|....++-.|...|++.. .+.|+..++.+.+.-.++| ||+..
T Consensus 471 ~~i~rav~~L~~~Q~~dG~W~g~-wg~~~~Y~T~~al~aL~~~g~~~~-~~~i~rAv~wL~~~Q~~DG-GWge~~~sy~~ 547 (635)
T TIGR01507 471 PVIERAVEYLKREQEPDGSWFGR-WGVNYLYGTGAVLSALKAVGIDTR-EPYIQKALAWLESHQNPDG-GWGEDCRSYED 547 (635)
T ss_pred HHHHHHHHHHHHccCCCCCCccC-CCCccccHHHHHHHHHHHcCCCcc-cHHHHHHHHHHHHhcCCCC-CCCCCCccccc
Confidence 26788988876554321111 11 224666778889999999853 7889999999877633344 33311
Q ss_pred -----CCCCChHHHHHHHHHHHHcCCc
Q 003417 381 -----TRVQDLDDTSMGFRLLRLHGYD 402 (821)
Q Consensus 381 -----~~~~DlddTAlaFrlLR~~Gy~ 402 (821)
....|+.-||.+...|+..|..
T Consensus 548 ~~~~g~g~s~~s~TA~AL~AL~~ag~~ 574 (635)
T TIGR01507 548 PAYAGKGASTASQTAWALIALIAAGRA 574 (635)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHhCCC
Confidence 1135788899999998887754
No 20
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=96.95 E-value=0.0023 Score=77.25 Aligned_cols=83 Identities=17% Similarity=0.305 Sum_probs=58.2
Q ss_pred ccchhhhhhhhcccc-CCC-CCCCCChhHHHHHHhccCCCCCCCCCCC------CC--chhhHhhhHHHHHHHHhhc-cC
Q 003417 120 SVSAYDTAWVALVED-IQG-SGAPQFPSSLHWIANSQLPDGSWGDHLL------FS--AHDRLINTLACVVALRSWN-IH 188 (821)
Q Consensus 120 S~S~YDTAWVAmvp~-~~g-~~~p~Fp~~~~wil~nQ~~DGsWG~~~~------~~--~~d~ll~TLA~vlAL~~w~-~~ 188 (821)
.+..|-|+|+.+.=. .+. ...+.-..+++||++.|.+|||||..-. +. ..-....|..||+||..-+ .+
T Consensus 502 ~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~~~ 581 (634)
T TIGR03463 502 VCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAGEGG 581 (634)
T ss_pred CCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHHHHHHHHHHcCCcC
Confidence 356899999544311 211 2346678899999999999999986311 00 1124789999999999855 23
Q ss_pred chhhhhHHHHHHHh
Q 003417 189 HDKCHKGLLFFKEN 202 (821)
Q Consensus 189 ~~~i~~Gl~fl~~n 202 (821)
.+.|+||++||.++
T Consensus 582 ~~~i~rgi~~L~~~ 595 (634)
T TIGR03463 582 HDAVQRGVAWLRSR 595 (634)
T ss_pred CHHHHHHHHHHHHh
Confidence 46799999999974
No 21
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=96.81 E-value=0.0014 Score=60.51 Aligned_cols=54 Identities=20% Similarity=0.402 Sum_probs=40.8
Q ss_pred HHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccCchhhhhH--HHHHHHhHh
Q 003417 147 LHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIHHDKCHKG--LLFFKENIS 204 (821)
Q Consensus 147 ~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~~~~i~~G--l~fl~~nl~ 204 (821)
|+||+..|.+|||||... . .-.+..|..|+.||+.....++ ++++ ++||.+...
T Consensus 1 v~~L~~~Q~~dGgw~~~~-~--~~~~~~T~~al~aL~~~g~~~~-~~~~~~~~~L~~~q~ 56 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGFG-G--PSDVWDTAFALLALAALGEEPD-RDRAAAVEWLLSQQN 56 (113)
T ss_dssp HHHHHHHB-TTSSBBSST-S---BEHHHHHHHHHHHHHHTSHHC-HHHHHHHHHHHHHB-
T ss_pred CHhhHHHcCCCCCCcCCC-C--CCCHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHhCC
Confidence 799999999999999741 1 1268999999999998776543 6666 999998543
No 22
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=96.73 E-value=0.00087 Score=61.81 Aligned_cols=81 Identities=21% Similarity=0.386 Sum_probs=50.6
Q ss_pred ccchhhhhhhhccccCCCCCCCCChhH--HHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccCc--hhhhhH
Q 003417 120 SVSAYDTAWVALVEDIQGSGAPQFPSS--LHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIHH--DKCHKG 195 (821)
Q Consensus 120 S~S~YDTAWVAmvp~~~g~~~p~Fp~~--~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~~--~~i~~G 195 (821)
.+.+++|+++.++=..-|.. +.-.++ ++||++.|.+||+|+.... ...-.+-.|..|+.||..-+... +.++|+
T Consensus 20 ~~~~~~T~~al~aL~~~g~~-~~~~~~~~~~~L~~~q~~dGg~~~~~~-~~~~~~~~t~~~l~~l~~~~~~~~~~~~~~a 97 (113)
T PF13249_consen 20 PSDVWDTAFALLALAALGEE-PDRDRAAAVEWLLSQQNPDGGWGSNPD-GGPPDVYTTYVALAALELLGRPDDEEAVRKA 97 (113)
T ss_dssp -BEHHHHHHHHHHHHHHTSH-HCHHHHHHHHHHHHHB-TTSGBBSSTT-TT-BSHHHHHHHHHHHHHHT-GGCHTTHCCH
T ss_pred CCCHHHHHHHHHHHHHhCCc-ccHHHHHHHHHHHHhCCCCCCccCCCC-CCCccHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 46899999955431111111 124566 9999999999999996531 01113556777777775544433 579999
Q ss_pred HHHHHHh
Q 003417 196 LLFFKEN 202 (821)
Q Consensus 196 l~fl~~n 202 (821)
+.||.++
T Consensus 98 ~~~l~~~ 104 (113)
T PF13249_consen 98 VDWLLSC 104 (113)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999873
No 23
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=96.69 E-value=0.032 Score=58.74 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHhccCCCCCc-------ccchhhhhhhhcccc-CCC---CCCCCChhHHHHHHhccCCCCCCCCCCCCC
Q 003417 99 EIKERVHAIKSMLGSMEDGEI-------SVSAYDTAWVALVED-IQG---SGAPQFPSSLHWIANSQLPDGSWGDHLLFS 167 (821)
Q Consensus 99 ~~~~~~~~i~~~~~~~~~g~~-------S~S~YDTAWVAmvp~-~~g---~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~ 167 (821)
.++..++.+.++-. .+|.. .+++++||++.+.=. ... ...+.-..+++||+..|.+||+|+......
T Consensus 53 ~~~~~~~~l~~~q~--~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~ 130 (300)
T cd00688 53 NIEKGIQRLLSYQL--SDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGN 130 (300)
T ss_pred HHHHHHHHHHhccC--CCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCC
Confidence 34555555555432 23322 568999999766522 211 123345678999999999999998543211
Q ss_pred -----chhhHhhhHHHHHHHHhhccC--chhhhhHHHHHHHhH
Q 003417 168 -----AHDRLINTLACVVALRSWNIH--HDKCHKGLLFFKENI 203 (821)
Q Consensus 168 -----~~d~ll~TLA~vlAL~~w~~~--~~~i~~Gl~fl~~nl 203 (821)
....+..|..++.||..-+.. ...+++++.||.++.
T Consensus 131 ~~~~~~~~~~~~t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q 173 (300)
T cd00688 131 HRIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQ 173 (300)
T ss_pred CcccCCCCcccHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 134677899999999886654 357899999999864
No 24
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=96.33 E-value=0.2 Score=54.29 Aligned_cols=60 Identities=20% Similarity=0.149 Sum_probs=44.1
Q ss_pred CCChhHHHHHHhcc-CCCCCCCCCCCCCchhhHhhhHHHHHHHHhhcc---CchhhhhHHHHHHHh
Q 003417 141 PQFPSSLHWIANSQ-LPDGSWGDHLLFSAHDRLINTLACVVALRSWNI---HHDKCHKGLLFFKEN 202 (821)
Q Consensus 141 p~Fp~~~~wil~nQ-~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~---~~~~i~~Gl~fl~~n 202 (821)
-....+++||+..| .+||+|+..... .-.+..|.+|+.+|.-=+. .+..+++.++||.+.
T Consensus 47 ~~~~~~i~~l~~~q~~~~Ggf~~~~~~--~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~ 110 (286)
T cd02890 47 ENKDEIIDFIYSCQVNEDGGFGGGPGQ--DPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSL 110 (286)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCC--CccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHh
Confidence 34688999999999 999999864221 2258899999999876443 233456788887764
No 25
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=96.31 E-value=0.12 Score=54.51 Aligned_cols=214 Identities=18% Similarity=0.138 Sum_probs=117.9
Q ss_pred cchhhhhhhhccccCC-------CCCCCCChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhc----cCc
Q 003417 121 VSAYDTAWVALVEDIQ-------GSGAPQFPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWN----IHH 189 (821)
Q Consensus 121 ~S~YDTAWVAmvp~~~-------g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~----~~~ 189 (821)
.....|++.++.-..- +.........++||++.|++||+|+...... .-.+-.|..++.||..-+ ...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~-~~~~~~T~~~~~~l~~~~~~~~~~~ 103 (300)
T cd00688 25 EQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGND-YPSLWLTAYALKALLLAGDYIAVDR 103 (300)
T ss_pred CcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCC-CcchHhHHHHHHHHHHcCCccccCH
Confidence 3456777755442211 1224557889999999999999998653210 235778999999998644 234
Q ss_pred hhhhhHHHHHHHhHhhhhccCCCCCCceEeEehhHHHHHHHhCCCCCCCCChhhHHHHHHhhhhhcCCCCccccccchhH
Q 003417 190 DKCHKGLLFFKENISKLENENDEHMPIGFEVAFPSLLEIARSLDIEVPYDSPVLQKIYDKRNLKLTRIPKDIMHNVPTTL 269 (821)
Q Consensus 190 ~~i~~Gl~fl~~nl~~~~~~~~~~~~vgfeii~P~Ll~~a~~lgl~~p~~~~~l~~l~~~r~~kL~r~~~~~~~~~p~~l 269 (821)
..++|++.||.+.-. .+ =||.-..+. ..+ .+.. ..-+..-
T Consensus 104 ~~~~~~~~~l~~~q~--------~d-G~~~~~~~~--------------~~~---------------~~~~--~~~~~~t 143 (300)
T cd00688 104 IDLARALNWLLSLQN--------ED-GGFREDGPG--------------NHR---------------IGGD--ESDVRLT 143 (300)
T ss_pred HHHHHHHHHHHHccC--------CC-CCeeeecCC--------------CCc---------------ccCC--CCcccHH
Confidence 568999999987511 00 022211000 000 0000 0111222
Q ss_pred HHHHhcCCCcchHHHhhcccCCCcccCCccHHHHHHhccCchhHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHc
Q 003417 270 LHSLEGMPDLNWQKLLKLQCQDGSFLFSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVPNVYPVDIFEHLWAVDRLQRL 349 (821)
Q Consensus 270 lhslEgl~~~d~~~v~~~~~~~GS~~~SPSaTAa~l~~~~d~~~l~YL~~~v~~~~g~VP~~yP~d~fe~Lw~VD~LqRL 349 (821)
.+++.+|.. .. .. .. ...-+++.+||.+....-++- ..-.+.+.+...+++..|..+
T Consensus 144 ~~al~aL~~------~~-~~-~~--------------~~~~~~~~~~l~~~q~~~g~~-~~~~~~~~~~t~~~~~aL~~~ 200 (300)
T cd00688 144 AYALIALAL------LG-KL-DP--------------DPLIEKALDYLLSCQNYDGGF-GPGGESHGYGTACAAAALALL 200 (300)
T ss_pred HHHHHHHHH------cC-CC-CC--------------cHHHHHHHHHHHHHhcCCCCc-CCCccccHHHHHHHHHHHHHc
Confidence 333333321 00 00 00 112246778887776543322 112345678889999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhccccccccC----CCCCChHHHHHHHHHHHHcCC
Q 003417 350 GISRYFQPEIKECLDYVYRYWTEEGICWARN----TRVQDLDDTSMGFRLLRLHGY 401 (821)
Q Consensus 350 GIs~~F~~EI~~~Ld~i~~~~~~~gi~~~~~----~~~~DlddTAlaFrlLR~~Gy 401 (821)
|.. ....++.+++.+-+.-...| +|+.. ....|...|+.+...|...|.
T Consensus 201 ~~~--~~~~~~~~~~~L~~~q~~~g-~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~ 253 (300)
T cd00688 201 GDL--DSPDAKKALRWLLSRQRPDG-GWGEGRDRTNKLSDSCYTEWAAYALLALGK 253 (300)
T ss_pred CCc--chHHHHHHHHHHHHhcCCCC-CcCccccCCCCcCchHHHHHHHHHHHHHhh
Confidence 986 56778888888876544433 12111 123566777777777776664
No 26
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=96.28 E-value=0.01 Score=64.73 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=59.1
Q ss_pred ccchhhhhhhhcc--ccCC--CCCCCCChhHHHHHHhccCCCCCCCCCCCCCc-------hhhHhhhHHHHHHHHhhccC
Q 003417 120 SVSAYDTAWVALV--EDIQ--GSGAPQFPSSLHWIANSQLPDGSWGDHLLFSA-------HDRLINTLACVVALRSWNIH 188 (821)
Q Consensus 120 S~S~YDTAWVAmv--p~~~--g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~-------~d~ll~TLA~vlAL~~w~~~ 188 (821)
.+|+|-||-|.++ ..-. ........++++||+..|.+||+|+..+.... ...+..|.-|++||..-+..
T Consensus 77 ~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~ 156 (292)
T cd02897 77 SGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLP 156 (292)
T ss_pred CcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCc
Confidence 4578999997654 1111 11223456799999999999999996532111 12356799999999986643
Q ss_pred --chhhhhHHHHHHHhHh
Q 003417 189 --HDKCHKGLLFFKENIS 204 (821)
Q Consensus 189 --~~~i~~Gl~fl~~nl~ 204 (821)
...|+||++||.++..
T Consensus 157 ~~~~~i~~a~~yL~~~~~ 174 (292)
T cd02897 157 SERPVVEKALSCLEAALD 174 (292)
T ss_pred cccHHHHHHHHHHHHhcc
Confidence 3468999999998654
No 27
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=95.88 E-value=0.017 Score=63.39 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=58.8
Q ss_pred ccchhhhhhhhccc----cCCCCCCCCChhHHHHHHhccCCCCCCCCCCCCCc---h-------hhHhhhHHHHHHHHhh
Q 003417 120 SVSAYDTAWVALVE----DIQGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSA---H-------DRLINTLACVVALRSW 185 (821)
Q Consensus 120 S~S~YDTAWVAmvp----~~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~---~-------d~ll~TLA~vlAL~~w 185 (821)
..|++.||-|.++= .........--+.++||+.+|.+||+|+....+.. . ..+..|.=+++||..-
T Consensus 78 ~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~ 157 (297)
T cd02896 78 PSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLIALQEA 157 (297)
T ss_pred CcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccCCCccchHHHHHHHHhh
Confidence 57899999977651 11111222345589999999999999997632111 0 2466789999999886
Q ss_pred ccC--------chhhhhHHHHHHHhHhh
Q 003417 186 NIH--------HDKCHKGLLFFKENISK 205 (821)
Q Consensus 186 ~~~--------~~~i~~Gl~fl~~nl~~ 205 (821)
+.. ...|+||++||.++...
T Consensus 158 ~~~~~~~~~~~~~~i~rA~~yL~~~~~~ 185 (297)
T cd02896 158 RSICPPEVQNLDQSIRKAISYLENQLPN 185 (297)
T ss_pred hccccccchhhHHHHHHHHHHHHHhccc
Confidence 431 23689999999987643
No 28
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=95.49 E-value=0.035 Score=61.59 Aligned_cols=82 Identities=18% Similarity=0.413 Sum_probs=57.4
Q ss_pred cchhhhhhhhccccCCCC--CCCCChhHHHHHHhccCCCCCCCCCCC-C-------CchhhHhhhHHHHHHHHhhcc-Cc
Q 003417 121 VSAYDTAWVALVEDIQGS--GAPQFPSSLHWIANSQLPDGSWGDHLL-F-------SAHDRLINTLACVVALRSWNI-HH 189 (821)
Q Consensus 121 ~S~YDTAWVAmvp~~~g~--~~p~Fp~~~~wil~nQ~~DGsWG~~~~-~-------~~~d~ll~TLA~vlAL~~w~~-~~ 189 (821)
...|.||++++.=..-|. ..+.....++||+..|.+||+|+.... + ..--.+..|..+|+||..... ..
T Consensus 217 ~~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~g~~~~ 296 (348)
T cd02889 217 CFIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMAAGEPDS 296 (348)
T ss_pred cchHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHhcCCCCH
Confidence 467999996554222222 245567899999999999999985210 0 001158899999999998653 33
Q ss_pred hhhhhHHHHHHHh
Q 003417 190 DKCHKGLLFFKEN 202 (821)
Q Consensus 190 ~~i~~Gl~fl~~n 202 (821)
..++|+++||.++
T Consensus 297 ~~v~~a~~wL~~~ 309 (348)
T cd02889 297 EAVKRGVKYLLNT 309 (348)
T ss_pred HHHHHHHHHHHHh
Confidence 5799999999974
No 29
>PLN03012 Camelliol C synthase
Probab=95.20 E-value=0.021 Score=69.57 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=43.2
Q ss_pred hhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccC---chhhhhHHHHHHH
Q 003417 144 PSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIH---HDKCHKGLLFFKE 201 (821)
Q Consensus 144 p~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~---~~~i~~Gl~fl~~ 201 (821)
-.+++||+..|.+||||++.=+ +.-+-.|.+||.||..-+.. ...|+||++||.+
T Consensus 593 ~rAv~~L~~~Q~~DGsW~G~Wg---v~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls 650 (759)
T PLN03012 593 KKAAEYIENIQMLDGSWYGNWG---ICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLA 650 (759)
T ss_pred HHHHHHHHHhcCCCCCCccccc---ccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHH
Confidence 3489999999999999997521 11234899999999986542 2679999999996
No 30
>PLN02993 lupeol synthase
Probab=95.06 E-value=0.48 Score=58.30 Aligned_cols=256 Identities=14% Similarity=0.215 Sum_probs=138.9
Q ss_pred hhHHHHHHHHHHHhccCCC-----CCcccchhhhhh--hhcccc-CCCCCCCCChhHHHHHHhccCC-----C-------
Q 003417 98 NEIKERVHAIKSMLGSMED-----GEISVSAYDTAW--VALVED-IQGSGAPQFPSSLHWIANSQLP-----D------- 157 (821)
Q Consensus 98 ~~~~~~~~~i~~~~~~~~~-----g~~S~S~YDTAW--VAmvp~-~~g~~~p~Fp~~~~wil~nQ~~-----D------- 157 (821)
..++.-+++|++.+=.-++ |. ...+.|||+ -|++.. +.....|.--.+.+||++.|.- |
T Consensus 389 ~~~~~~l~ri~d~lw~~edgm~~q~~-gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~ 467 (763)
T PLN02993 389 DHFKKHLARIPDYMWVAEDGMKMQSF-GSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRH 467 (763)
T ss_pred HHHHHHHHHhhhcEEEeCCceEEcCC-CCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCC
Confidence 3556666777665543333 34 336899999 456533 2223456677899999999983 5
Q ss_pred ---CCCC---CCCCCCchhhHhhhHHHHHHHHhhcc-------CchhhhhHHHHHHHhHhhhhccCCCCCCceEeEeh-h
Q 003417 158 ---GSWG---DHLLFSAHDRLINTLACVVALRSWNI-------HHDKCHKGLLFFKENISKLENENDEHMPIGFEVAF-P 223 (821)
Q Consensus 158 ---GsWG---~~~~~~~~d~ll~TLA~vlAL~~w~~-------~~~~i~~Gl~fl~~nl~~~~~~~~~~~~vgfeii~-P 223 (821)
|+|+ .+.+++..|+----|-|+++|.+... .++++.+|+.+|-.- ...+ --=-.||..- +
T Consensus 468 ~~~GgW~Fs~~~~gyp~sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~m----Qn~d--GG~aafe~~~~~ 541 (763)
T PLN02993 468 ISKGAWTLSDRDHGWQVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSL----QSEN--GGVTAWEPVRAY 541 (763)
T ss_pred CCCCcCcCccCCCCCCcCCchHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHhh----ccCC--CCEEeeeCCCch
Confidence 8998 23568888887777777788877542 224677887776641 1111 1111244321 2
Q ss_pred HHHHHHH---hCC-CCCCCCChhhHHHHHHhhhhhcCCCCccccccchhHHHHHhcCCCcchHHHhhcccCCCcccCCcc
Q 003417 224 SLLEIAR---SLD-IEVPYDSPVLQKIYDKRNLKLTRIPKDIMHNVPTTLLHSLEGMPDLNWQKLLKLQCQDGSFLFSPS 299 (821)
Q Consensus 224 ~Ll~~a~---~lg-l~~p~~~~~l~~l~~~r~~kL~r~~~~~~~~~p~~llhslEgl~~~d~~~v~~~~~~~GS~~~SPS 299 (821)
..|+.+. ..| +-+ | +..+.--.+++|+|.- +.... |.
T Consensus 542 ~~le~ln~ae~f~~~mi--D-----------------------~~~~dcT~~vl~aL~~--------~~~~~------p~ 582 (763)
T PLN02993 542 KWLELLNPTDFFANTMV--E-----------------------REYVECTSAVIQALVL--------FKQLY------PD 582 (763)
T ss_pred hHHHcCCHHHhhcCccc--C-----------------------CCCcCHHHHHHHHHHH--------hcccC------cc
Confidence 2233222 111 000 0 1233333456666542 00000 11
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHhcCCCCCCCccC-hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhccccccc
Q 003417 300 STAYALMQTKDENCLKYLTKAVQRFNGGVPNVYPVD-IFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWA 378 (821)
Q Consensus 300 aTAa~l~~~~d~~~l~YL~~~v~~~~g~VP~~yP~d-~fe~Lw~VD~LqRLGIs~~F~~EI~~~Ld~i~~~~~~~gi~~~ 378 (821)
.-. .-+...-.++++||.+..+. +|+--.-+.+. +|--.+.|..|...|-.+.-.+.|+..++.+-+.-.++| ||+
T Consensus 583 ~r~-~ei~~~i~rAv~yL~~~Q~~-DGSW~G~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DG-GWG 659 (763)
T PLN02993 583 HRT-KEIIKSIEKAVQFIESKQTP-DGSWYGNWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDG-GWG 659 (763)
T ss_pred hhh-hhHHHHHHHHHHHHHHhcCC-CCCcccccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCC-CcC
Confidence 000 00111124677777776544 23221122333 256678899999999987666789999998876543333 232
Q ss_pred cC-------------CCCCChHHHHHHHHHHHHcCCc
Q 003417 379 RN-------------TRVQDLDDTSMGFRLLRLHGYD 402 (821)
Q Consensus 379 ~~-------------~~~~DlddTAlaFrlLR~~Gy~ 402 (821)
.. ...+.+.-||-|...|-.-|++
T Consensus 660 Es~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~ 696 (763)
T PLN02993 660 ESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQA 696 (763)
T ss_pred cCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCC
Confidence 11 0113457788888877777763
No 31
>PLN03012 Camelliol C synthase
Probab=94.89 E-value=0.075 Score=64.99 Aligned_cols=82 Identities=17% Similarity=0.268 Sum_probs=57.0
Q ss_pred ccchhhhhhh--hcccc-CCCCCCCCChhHHHHHHhccCCCCCCCCCCC------CCc----hhhHhhhHHHHHHHHhhc
Q 003417 120 SVSAYDTAWV--ALVED-IQGSGAPQFPSSLHWIANSQLPDGSWGDHLL------FSA----HDRLINTLACVVALRSWN 186 (821)
Q Consensus 120 S~S~YDTAWV--Amvp~-~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~------~~~----~d~ll~TLA~vlAL~~w~ 186 (821)
.+=.|=|+|| |++.- .+....+.=..+++||++.|++|||||..-. +.. .-.+.+|.=||+||..-+
T Consensus 615 v~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag 694 (759)
T PLN03012 615 ICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAG 694 (759)
T ss_pred ccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcC
Confidence 5667999994 44321 1112235556799999999999999997521 111 134799999999999865
Q ss_pred cC---chhhhhHHHHHHH
Q 003417 187 IH---HDKCHKGLLFFKE 201 (821)
Q Consensus 187 ~~---~~~i~~Gl~fl~~ 201 (821)
-. +..|+||++||-+
T Consensus 695 ~~~~~~~~i~Rg~~~Ll~ 712 (759)
T PLN03012 695 QAERDPIPLHRAAKLIIN 712 (759)
T ss_pred CCCCCcHHHHHHHHHHHH
Confidence 32 2379999999997
No 32
>PLN02993 lupeol synthase
Probab=94.82 E-value=0.07 Score=65.36 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=56.1
Q ss_pred ccchhhhhh--hhcccc-CCCCCCCCChhHHHHHHhccCCCCCCCCCC------CCC----chhhHhhhHHHHHHHHhhc
Q 003417 120 SVSAYDTAW--VALVED-IQGSGAPQFPSSLHWIANSQLPDGSWGDHL------LFS----AHDRLINTLACVVALRSWN 186 (821)
Q Consensus 120 S~S~YDTAW--VAmvp~-~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~------~~~----~~d~ll~TLA~vlAL~~w~ 186 (821)
.+=.|=|++ .||+-. ......|.-..+++||++.|++||+||..- .+. ..--+.+|.=|++||..-+
T Consensus 615 v~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG 694 (763)
T PLN02993 615 ICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAG 694 (763)
T ss_pred cccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcC
Confidence 345688888 445321 011123556779999999999999999741 011 1124789999999999865
Q ss_pred cC---chhhhhHHHHHHH
Q 003417 187 IH---HDKCHKGLLFFKE 201 (821)
Q Consensus 187 ~~---~~~i~~Gl~fl~~ 201 (821)
.. +..|+||++||.+
T Consensus 695 ~~~~~~~~l~Rgi~~L~~ 712 (763)
T PLN02993 695 QAERDLIPLHRAAKLIIT 712 (763)
T ss_pred CCCCCcHHHHHHHHHHHh
Confidence 32 2379999999986
No 33
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=94.63 E-value=0.051 Score=42.41 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=28.8
Q ss_pred hhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHH
Q 003417 144 PSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALR 183 (821)
Q Consensus 144 p~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~ 183 (821)
.+..+||+..|.+||+|+....- ..-+..|.-|+.||+
T Consensus 4 ~~~~~~l~~~Q~~dGGf~~~~~~--~~d~~~t~~~~~~L~ 41 (44)
T PF00432_consen 4 EKLIRFLLSCQNPDGGFGGRPGG--ESDTCYTYCALAALS 41 (44)
T ss_dssp HHHHHHHHHTBBTTSSBBSSTTS--SBBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCC--CCChHHHHHHHHHHH
Confidence 56789999999999999965221 124778888887775
No 34
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=94.37 E-value=0.037 Score=59.06 Aligned_cols=89 Identities=19% Similarity=0.274 Sum_probs=59.6
Q ss_pred Ccccchhhhhhhhccc----cCCCCCCCCChhHHHHHHhccCCCCCCCCCCCCCc-------hhhHhhhHHHHHHHHhhc
Q 003417 118 EISVSAYDTAWVALVE----DIQGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSA-------HDRLINTLACVVALRSWN 186 (821)
Q Consensus 118 ~~S~S~YDTAWVAmvp----~~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~-------~d~ll~TLA~vlAL~~w~ 186 (821)
.-++|.+=||.|.++= ..-......--++++||+.+|.+||+|.+.+.... .+.+.-|.=+++||..-+
T Consensus 22 ~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~e~~ 101 (246)
T PF07678_consen 22 DSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGVEDDIALTAYVLIALLEAG 101 (246)
T ss_dssp TSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHHHCH
T ss_pred CCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCCCCCeeehHHHHHHHHhhh
Confidence 3477899999987751 11122222235789999999999999986542111 256888999999999754
Q ss_pred -c-------CchhhhhHHHHHHHhHhhh
Q 003417 187 -I-------HHDKCHKGLLFFKENISKL 206 (821)
Q Consensus 187 -~-------~~~~i~~Gl~fl~~nl~~~ 206 (821)
+ ....++||+.||++++...
T Consensus 102 ~~~~~~~~~~~~~i~kA~~~L~~~~~~~ 129 (246)
T PF07678_consen 102 SLCDSEKPEYENAINKALNYLERHLDNI 129 (246)
T ss_dssp CCHTTTHHCHHHHHHHHHHHHHHHHGCT
T ss_pred hhccccchhhHHHHHHHHHHHHHhcccc
Confidence 1 1246999999999884433
No 35
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=93.87 E-value=0.15 Score=54.71 Aligned_cols=86 Identities=20% Similarity=0.227 Sum_probs=59.1
Q ss_pred ccchhhhhhhhccc----cCCCCCCCCChhHHHHHHhccCCCCCCCCCCCCC-------chhhHhhhHHHHHHHHhhccC
Q 003417 120 SVSAYDTAWVALVE----DIQGSGAPQFPSSLHWIANSQLPDGSWGDHLLFS-------AHDRLINTLACVVALRSWNIH 188 (821)
Q Consensus 120 S~S~YDTAWVAmvp----~~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~-------~~d~ll~TLA~vlAL~~w~~~ 188 (821)
.+++|.||.|.++= .......+..-.+++||+..|.+||+|+...... ..+.+-.|.-++.+|.+-+.-
T Consensus 76 ~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~tA~al~~L~~~g~~ 155 (282)
T cd02891 76 SGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHREMKGGVDDSVSLTAYVLIALAEAGKA 155 (282)
T ss_pred CCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHhhcCCcCCCcchHHHHHHHHHHhccc
Confidence 67999999976641 1122233457789999999999999998653211 123345688888888864421
Q ss_pred -chhhhhHHHHHHHhHhh
Q 003417 189 -HDKCHKGLLFFKENISK 205 (821)
Q Consensus 189 -~~~i~~Gl~fl~~nl~~ 205 (821)
+..+.+++.||.++..+
T Consensus 156 ~~~~~~~a~~~L~~~~~~ 173 (282)
T cd02891 156 CDASIEKALAYLETQLDG 173 (282)
T ss_pred chHHHHHHHHHHHHhccc
Confidence 34789999999986543
No 36
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=93.00 E-value=6.7 Score=43.67 Aligned_cols=212 Identities=17% Similarity=0.236 Sum_probs=116.5
Q ss_pred ChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhcc-CchhhhhHHHHHHHhHhhhhccCCCCCCceEeEe
Q 003417 143 FPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNI-HHDKCHKGLLFFKENISKLENENDEHMPIGFEVA 221 (821)
Q Consensus 143 Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~-~~~~i~~Gl~fl~~nl~~~~~~~~~~~~vgfeii 221 (821)
...+++||+..|.+||++|...+.. .-+.+|.+|+.+|.--+. ..-..++.+.||.+.- .-. =||---
T Consensus 58 ~~~~i~~l~~cq~~~GGF~~~~~~~--~h~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q-~~d--------GgF~~~ 126 (316)
T PLN03201 58 RDEVVSWVMRCQHESGGFGGNTGHD--PHILYTLSAVQILALFDRLDLLDADKVASYVAGLQ-NED--------GSFSGD 126 (316)
T ss_pred HHHHHHHHHHhcCCCCCcCCCCCCc--ccHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhc-CCC--------CCccCC
Confidence 5789999999999999998653322 268999999998865321 1112455777777521 110 022210
Q ss_pred hhHHHHHHHhCC-CCCCCCChhhHHHHHHhhhhhcCCCCccccccchhHHHHHhcCCCcchHH----HhhcccCCCcccC
Q 003417 222 FPSLLEIARSLD-IEVPYDSPVLQKIYDKRNLKLTRIPKDIMHNVPTTLLHSLEGMPDLNWQK----LLKLQCQDGSFLF 296 (821)
Q Consensus 222 ~P~Ll~~a~~lg-l~~p~~~~~l~~l~~~r~~kL~r~~~~~~~~~p~~llhslEgl~~~d~~~----v~~~~~~~GS~~~ 296 (821)
.-| -+.-+..-++. + ++.|..+.++|-++ ++.-|..||.|..
T Consensus 127 ---------~~ge~D~r~ty~a~a-~-----------------------l~LL~~~~~i~~~~~~~~i~scq~~dGGF~~ 173 (316)
T PLN03201 127 ---------EWGEIDTRFSYCALC-C-----------------------LSLLKRLDKINVEKAVDYIVSCKNFDGGFGC 173 (316)
T ss_pred ---------CCCCccHHHHHHHHH-H-----------------------HHHhCccchhHHHHHHHHHHHhcCCCCCcCC
Confidence 001 00000000010 0 11111111122222 2334667888887
Q ss_pred CccH------HHHH-----Hhcc---Cc-hhHHHHHHHHHHHh--cCCCCCCCccChhHHHHHHHHHHHcCCCCCCHHHH
Q 003417 297 SPSS------TAYA-----LMQT---KD-ENCLKYLTKAVQRF--NGGVPNVYPVDIFEHLWAVDRLQRLGISRYFQPEI 359 (821)
Q Consensus 297 SPSa------TAa~-----l~~~---~d-~~~l~YL~~~v~~~--~g~VP~~yP~d~fe~Lw~VD~LqRLGIs~~F~~EI 359 (821)
.|.. |+++ ++.. -| +...++|.+-.... .++-|+ .+.|..-.-|++.+|.=||-...+..
T Consensus 174 ~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~-k~~D~cys~w~~a~L~ll~~~~~~d~-- 250 (316)
T PLN03201 174 TPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPE-KLPDVCYSWWVLSSLIIIDRVHWIDK-- 250 (316)
T ss_pred CCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCC-CCCchHHHHHHHHHHHHhccccccCH--
Confidence 7731 2222 2221 12 23455665544322 234665 46778888999999999987655543
Q ss_pred HHHHHHHHhhhhc--cccccccCCCCCChHHHHHHHHHHHHcCCc
Q 003417 360 KECLDYVYRYWTE--EGICWARNTRVQDLDDTSMGFRLLRLHGYD 402 (821)
Q Consensus 360 ~~~Ld~i~~~~~~--~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~ 402 (821)
+.+..++.++-.. .|....++. .+|+..|-.+.-.|.+.|++
T Consensus 251 ~~l~~~i~~~q~~~~GGf~~~p~~-~~D~~ht~~~l~~lsl~~~~ 294 (316)
T PLN03201 251 DKLAKFILDCQDDENGGISDRPDD-AVDVFHTFFGVAGLSLLGYP 294 (316)
T ss_pred HHHHHHHHHHcCCCCCCcCCCcCC-CCChhHHHHHHHHHHhcCCC
Confidence 4566667665432 234333333 58999999999999999873
No 37
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=90.63 E-value=0.71 Score=50.10 Aligned_cols=98 Identities=17% Similarity=0.077 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhccCCCCCcccch---hhh-----hhhhccccCCCCCCCCChhHHHHHHhccCCCCCCCCCCCCCchhh
Q 003417 100 IKERVHAIKSMLGSMEDGEISVSA---YDT-----AWVALVEDIQGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSAHDR 171 (821)
Q Consensus 100 ~~~~~~~i~~~~~~~~~g~~S~S~---YDT-----AWVAmvp~~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ 171 (821)
.+.+++-|+++.. .+|....++ +|+ |-.++. -++....+..+.+++||++.|.+||+||...+-.. .
T Consensus 100 ~~~~~~~l~~~q~--~dGgf~~~~~~~~d~~~ty~al~~l~-ll~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~es--~ 174 (286)
T cd02890 100 REKIYKFLSSLQN--PDGSFRGDLGGEVDTRFVYCALSILS-LLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAES--H 174 (286)
T ss_pred HHHHHHHHHHhcC--CCCCcccCCCCCchHHHHHHHHHHHH-HhCCchhhhHHHHHHHHHHhCCCCCCcCCCCCCCC--C
Confidence 3456666666544 344443332 344 333322 23332346689999999999999999995321111 3
Q ss_pred HhhhHHHHHHHHhhcc-CchhhhhHHHHHHHh
Q 003417 172 LINTLACVVALRSWNI-HHDKCHKGLLFFKEN 202 (821)
Q Consensus 172 ll~TLA~vlAL~~w~~-~~~~i~~Gl~fl~~n 202 (821)
...|-.||.+|+-=+. .+..+++.++||.+.
T Consensus 175 ~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~ 206 (286)
T cd02890 175 GGYTFCAVASLALLGRLDLIDKERLLRWLVER 206 (286)
T ss_pred ccHhHHHHHHHHHcCCCcccCHHHHHHHHHHh
Confidence 5567777777765443 245678888888864
No 38
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=90.32 E-value=14 Score=40.38 Aligned_cols=208 Identities=17% Similarity=0.243 Sum_probs=111.6
Q ss_pred ChhHHHHHHhcc-CCCCCCCCCCCCCchhhHhhhHHHHHHHHh---hccCchhhhhHHHHHHHhHhhhhccCCCCCCceE
Q 003417 143 FPSSLHWIANSQ-LPDGSWGDHLLFSAHDRLINTLACVVALRS---WNIHHDKCHKGLLFFKENISKLENENDEHMPIGF 218 (821)
Q Consensus 143 Fp~~~~wil~nQ-~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~---w~~~~~~i~~Gl~fl~~nl~~~~~~~~~~~~vgf 218 (821)
-...++||+..| .+||+++....... -+.+|++|+.+|.- .+.-++..++.+.||.+- .. ++ =||
T Consensus 51 ~~~~i~fl~~~q~~~~GgF~~~~~~~~--~~~~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~-q~---~d-----Ggf 119 (287)
T cd02894 51 REEIIEFVKSCQDNEDGGFGGSPGHDP--HILSTLSAIQILALYDLLNKIDENKEKIAKFIKGL-QN---ED-----GSF 119 (287)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCcc--hHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHH-cC---CC-----CCe
Confidence 378899999999 77999986532222 58889999888773 121122467888888752 11 10 133
Q ss_pred eEehhHHHHHHHhCC-CCCCCCChhhHHHHHHhhhhhcCCCCccccccchhHHHHHhcCCCcchHH----HhhcccCCCc
Q 003417 219 EVAFPSLLEIARSLD-IEVPYDSPVLQKIYDKRNLKLTRIPKDIMHNVPTTLLHSLEGMPDLNWQK----LLKLQCQDGS 293 (821)
Q Consensus 219 eii~P~Ll~~a~~lg-l~~p~~~~~l~~l~~~r~~kL~r~~~~~~~~~p~~llhslEgl~~~d~~~----v~~~~~~~GS 293 (821)
--. | -| -++.+..-++..+ .+ |.+. .++|.++ +...|..||.
T Consensus 120 ~~~-~--------~~e~d~~~ty~a~~~l-~l----l~~~-------------------~~i~~~~~~~~l~~~q~~dGG 166 (287)
T cd02894 120 SGD-K--------WGEVDTRFSYCAVLCL-TL----LGKL-------------------DLIDVDKAVDYLLSCYNFDGG 166 (287)
T ss_pred ecC-C--------CCCchHHHHHHHHHHH-HH----hCCc-------------------chhhHHHHHHHHHHcCCCCCC
Confidence 211 1 01 0000000111111 11 0110 0122222 3345778999
Q ss_pred ccCCccH---HH---HH-----HhccC----chhHHHHHHHHHHHhc--CCCCCCCccChhHHHHHHHHHHHcCCCCCCH
Q 003417 294 FLFSPSS---TA---YA-----LMQTK----DENCLKYLTKAVQRFN--GGVPNVYPVDIFEHLWAVDRLQRLGISRYFQ 356 (821)
Q Consensus 294 ~~~SPSa---TA---a~-----l~~~~----d~~~l~YL~~~v~~~~--g~VP~~yP~d~fe~Lw~VD~LqRLGIs~~F~ 356 (821)
|..+|.. ++ ++ ++... -+++.+||.+-....+ ++.|+ .+.|..---|.+.+|.-+|-.....
T Consensus 167 F~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~-k~~D~~ysf~~~a~l~~l~~~~~~~ 245 (287)
T cd02894 167 FGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPE-KLPDVCYSWWVLSSLKIIGRLHWIN 245 (287)
T ss_pred cCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCC-CCCchhHhhHHHHHHHHhccccccC
Confidence 9988832 22 11 22211 2367788876554322 23554 3567777789999999888653332
Q ss_pred HHHHHHHHHHHhhhh-ccc-cccccCCCCCChHHHHHHHHHHHH
Q 003417 357 PEIKECLDYVYRYWT-EEG-ICWARNTRVQDLDDTSMGFRLLRL 398 (821)
Q Consensus 357 ~EI~~~Ld~i~~~~~-~~g-i~~~~~~~~~DlddTAlaFrlLR~ 398 (821)
-+.+.+.+-+.-. ..| ....++ ..+|+.-|..+.-.|.+
T Consensus 246 --~~~l~~~l~~~q~~~~GGf~~~p~-~~~D~~ht~~~l~~Lsl 286 (287)
T cd02894 246 --KNKLKNFILACQDEEDGGFADRPG-NMVDVFHTFFGLAGLSL 286 (287)
T ss_pred --HHHHHHHHHHhcCCCCCCcCCCCC-CCCChhHHHHHHHHHHh
Confidence 3456666665431 222 222223 35799999999887764
No 39
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.90 E-value=16 Score=38.48 Aligned_cols=236 Identities=17% Similarity=0.162 Sum_probs=127.7
Q ss_pred hHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccCchhhhhHHHHHHHhHhhhhccCCCCCCceEeEehhH
Q 003417 145 SSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIHHDKCHKGLLFFKENISKLENENDEHMPIGFEVAFPS 224 (821)
Q Consensus 145 ~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~~~~i~~Gl~fl~~nl~~~~~~~~~~~~vgfeii~P~ 224 (821)
..++||-..|++||+..--.+ .-|.|-+|-=||-.+..-......-+|-+.||.+++... .+| |-.
T Consensus 10 rvi~fi~~RrhedGGy~f~~~--Lpdti~~TyYAi~i~s~lg~evPr~EktiefL~d~~qt~--------~~~----~a~ 75 (274)
T COG1689 10 RVIEFIEKRRHEDGGYCFVSQ--LPDTINDTYYAIKIYSLLGHEVPRKEKTIEFLYDQMQTA--------GVG----VAM 75 (274)
T ss_pred HHHHHHHHhhcCCCCeEEecc--CcchhhhhhhhhhhhhhcCCcCchHHHHHHHHHHHHHHh--------hhH----HHH
Confidence 468999999999999864321 224577777666666554555567899999999966433 334 233
Q ss_pred HHHHHHhCCCCCCCCChhhHHHHHHhhhhhcCCCCccccccchhHHHHHhcCCCcchHHHhhcccCCCcccCCccH-HHH
Q 003417 225 LLEIARSLDIEVPYDSPVLQKIYDKRNLKLTRIPKDIMHNVPTTLLHSLEGMPDLNWQKLLKLQCQDGSFLFSPSS-TAY 303 (821)
Q Consensus 225 Ll~~a~~lgl~~p~~~~~l~~l~~~r~~kL~r~~~~~~~~~p~~llhslEgl~~~d~~~v~~~~~~~GS~~~SPSa-TAa 303 (821)
-++-.+-+|.+.+.. +. ..|.+.. ..+.|.+- ++++++.. -|.+|.+ -|+
T Consensus 76 ~~~~l~~lg~~d~~r----~~------~~l~~~~---~~~~e~Kf---~~~lggs~-------------~f~t~~~Le~t 126 (274)
T COG1689 76 AIEFLRILGAKDLAR----NK------MLLLFLK---YNPLEEKF---AVGLGGSE-------------EFGTATPLEAT 126 (274)
T ss_pred HHHHHHHhcccccch----hh------HHHHHhh---cCchhHHH---hhhcCcee-------------ecCCCchHHHH
Confidence 344455566543321 11 1111111 01233322 25555510 1233422 233
Q ss_pred -HHh---ccC----chhHHHHHHHHHHHhcCCCCCCCccC---hhHHHHHHHHHHHcCCC---CCCHHHHHHHHHHHHhh
Q 003417 304 -ALM---QTK----DENCLKYLTKAVQRFNGGVPNVYPVD---IFEHLWAVDRLQRLGIS---RYFQPEIKECLDYVYRY 369 (821)
Q Consensus 304 -~l~---~~~----d~~~l~YL~~~v~~~~g~VP~~yP~d---~fe~Lw~VD~LqRLGIs---~~F~~EI~~~Ld~i~~~ 369 (821)
|.| +.. .++--+...+.++++.+++ .|-++ .-+-...+.+|-.+|+- +||+. .|
T Consensus 127 y~~~~~l~~~n~~~~eE~k~~v~~~~re~~~g~--~YGv~~pnt~~t~~aly~l~~k~~~~~v~~Fe~----------~c 194 (274)
T COG1689 127 YWMMSALNMVNYEYLEEMKEKVIEFVREFGIGD--AYGVTHPNTTMTYQALYTLGSKGPKEEVRHFEL----------CC 194 (274)
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHhhhhcccc--ccccCCcchHHHHHHHHhhccccchHHHHhHHh----------cc
Confidence 322 212 3445556666666665443 23222 23455667777777765 33332 12
Q ss_pred hhccccccccCCCCCChHHHHHHHHHHHHcCCc--cchhh--hhccc-cCCceeeccCCccchHHHHHhHHhhh
Q 003417 370 WTEEGICWARNTRVQDLDDTSMGFRLLRLHGYD--VSAEA--FEHFE-KGGEFFCFVGQSTQAVTGVYNLYRAS 438 (821)
Q Consensus 370 ~~~~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~--VS~dv--f~~F~-~~g~F~~~~~e~~~dvs~~l~Ly~AS 438 (821)
....|-..-|++--+=+.+|=-|||.|.++|-. +|.-. +.... .+|.|+- ...-.+++.=+-|+|-
T Consensus 195 ~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k~~i~~~~rFI~slqN~nGGFRR---S~~~GISt~e~tYrAl 265 (274)
T COG1689 195 GDWGGFTEVPNSYPPYIEPTFYALRGLELLGGKYCISDHIRFIRSLQNQNGGFRR---SYELGISTFENTYRAL 265 (274)
T ss_pred ccCCCcccCCCCCCCccchHHHHHhHHHHHccCcCchHHHHHHHHhhcCCCCeee---eEeccccchHHHHHHH
Confidence 111222222333335688999999999999976 54433 34445 7889972 2344577777888875
No 40
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=88.76 E-value=2.7 Score=45.86 Aligned_cols=111 Identities=21% Similarity=0.298 Sum_probs=74.1
Q ss_pred hHHHhhcccCCCcccC--------CccHHHHHHhc---cC-----c----hhHHHHHHHHHHHhcCCCCCC---------
Q 003417 281 WQKLLKLQCQDGSFLF--------SPSSTAYALMQ---TK-----D----ENCLKYLTKAVQRFNGGVPNV--------- 331 (821)
Q Consensus 281 ~~~v~~~~~~~GS~~~--------SPSaTAa~l~~---~~-----d----~~~l~YL~~~v~~~~g~VP~~--------- 331 (821)
-.+++.+|..||||.. ||--||++++. .. + .++++||.+..+ -+|+....
T Consensus 55 ~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~-~dG~f~~~~~~~~~~~~ 133 (292)
T cd02897 55 YQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQK-SNGCFREVGRVFHKAMQ 133 (292)
T ss_pred HHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcC-CCCCCCCCCcccChhhc
Confidence 4567788999999742 34567876432 11 1 268888887643 33332210
Q ss_pred --CccChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhccccccccCCCCCChHHHHHHHHHHHHcCCcc
Q 003417 332 --YPVDIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYDV 403 (821)
Q Consensus 332 --yP~d~fe~Lw~VD~LqRLGIs~~F~~EI~~~Ld~i~~~~~~~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~V 403 (821)
.|.++.-..+++-.|.+.|... ..+.|+..++++.+... ...+.+++|++-.+|...|.+-
T Consensus 134 ~~~~~~~~~TA~vl~aL~~~g~~~-~~~~i~~a~~yL~~~~~----------~~~~~y~~al~a~AL~~~~~~~ 196 (292)
T cd02897 134 GGVDDEVALTAYVLIALLEAGLPS-ERPVVEKALSCLEAALD----------SISDPYTLALAAYALTLAGSEK 196 (292)
T ss_pred CCCCCCcchHHHHHHHHHhcCCcc-ccHHHHHHHHHHHHhcc----------cCCCHHHHHHHHHHHHHcCCcc
Confidence 1223445789999999999875 45778888888877521 1357899999999999999433
No 41
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=85.96 E-value=42 Score=37.03 Aligned_cols=57 Identities=21% Similarity=0.190 Sum_probs=39.8
Q ss_pred ChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccCc--hh--hhhHHHHHHH
Q 003417 143 FPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIHH--DK--CHKGLLFFKE 201 (821)
Q Consensus 143 Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~~--~~--i~~Gl~fl~~ 201 (821)
-...++||...|.+||+.+..... .--+.+|.+|+.+|.-=+..+ .. .++.++||.+
T Consensus 49 ~~~~i~~i~~~q~~~GgF~~~~~~--~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~ 109 (299)
T cd02893 49 ADDVISFLRRCQNPSGGFGGGPGQ--LPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLS 109 (299)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCC--CccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHH
Confidence 368999999999999999865221 235899999999987644211 12 3447777665
No 42
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=83.90 E-value=1 Score=49.31 Aligned_cols=57 Identities=12% Similarity=0.272 Sum_probs=35.8
Q ss_pred ChhHHHHHHhccCCCCCCCCCCCCCchhhHhh--------hHHHHHHHHhhcc--------C-------chhhhhHHHHH
Q 003417 143 FPSSLHWIANSQLPDGSWGDHLLFSAHDRLIN--------TLACVVALRSWNI--------H-------HDKCHKGLLFF 199 (821)
Q Consensus 143 Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~--------TLA~vlAL~~w~~--------~-------~~~i~~Gl~fl 199 (821)
|-.+++|||.-|.++|+|..-.+ ......+ ++.++.+|....- . ..+|+||+.||
T Consensus 69 ~~rgld~LL~aQypnGGWPQf~p--~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~I 146 (290)
T TIGR02474 69 ARKGIEYLLKAQYPNGGWPQFYP--LKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECI 146 (290)
T ss_pred HHHHHHHHHhhhCCCCCcCcccC--CcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999984311 1111222 3355666644311 1 23588999998
Q ss_pred HH
Q 003417 200 KE 201 (821)
Q Consensus 200 ~~ 201 (821)
.+
T Consensus 147 Lk 148 (290)
T TIGR02474 147 LK 148 (290)
T ss_pred HH
Confidence 86
No 43
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=82.20 E-value=17 Score=38.89 Aligned_cols=120 Identities=23% Similarity=0.256 Sum_probs=77.1
Q ss_pred chHHHhhcccCCCcc-------cCCccHHHHHHhcc---C---------chhHHHHHHHHHHHhcCCCCCCCc-------
Q 003417 280 NWQKLLKLQCQDGSF-------LFSPSSTAYALMQT---K---------DENCLKYLTKAVQRFNGGVPNVYP------- 333 (821)
Q Consensus 280 d~~~v~~~~~~~GS~-------~~SPSaTAa~l~~~---~---------d~~~l~YL~~~v~~~~g~VP~~yP------- 333 (821)
..++++++|..|||+ -.+|-.||+++..- . -.++++||...+.. +|+.....+
T Consensus 54 ~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~-~g~~~~~~~~~~~~~~ 132 (282)
T cd02891 54 GYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKE-DGSFRELGPVIHREMK 132 (282)
T ss_pred HHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCC-CCCcCCCCCccCHhhc
Confidence 456788889999998 34677788865421 1 13677888876542 232221111
Q ss_pred ----cChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhccccccccCCCCCChHHHHHHHHHHHHcCCccc-hhhh
Q 003417 334 ----VDIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYDVS-AEAF 408 (821)
Q Consensus 334 ----~d~fe~Lw~VD~LqRLGIs~~F~~EI~~~Ld~i~~~~~~~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~VS-~dvf 408 (821)
.+.....+++..|.+.|... ...|...++.+.+.... ..+.+..|+.=.+|...|.... .+.+
T Consensus 133 ~~~~~~~~~tA~al~~L~~~g~~~--~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~g~~~~~~~~l 200 (282)
T cd02891 133 GGVDDSVSLTAYVLIALAEAGKAC--DASIEKALAYLETQLDG----------LLDPYALAILAYALALAGDSTRADEAL 200 (282)
T ss_pred CCcCCCcchHHHHHHHHHHhcccc--hHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCccHHHHHHH
Confidence 12245788999999999865 66777888888765321 2467888888899999886333 3345
Q ss_pred hccc
Q 003417 409 EHFE 412 (821)
Q Consensus 409 ~~F~ 412 (821)
+...
T Consensus 201 ~~l~ 204 (282)
T cd02891 201 KKLL 204 (282)
T ss_pred HHHH
Confidence 5554
No 44
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=81.31 E-value=92 Score=34.56 Aligned_cols=111 Identities=23% Similarity=0.268 Sum_probs=67.5
Q ss_pred HhhcccCCCcccCCcc------HHHHH-----HhccC-------chhHHHHHHHHHHHh--cCCCCCCCccChhHHHHHH
Q 003417 284 LLKLQCQDGSFLFSPS------STAYA-----LMQTK-------DENCLKYLTKAVQRF--NGGVPNVYPVDIFEHLWAV 343 (821)
Q Consensus 284 v~~~~~~~GS~~~SPS------aTAa~-----l~~~~-------d~~~l~YL~~~v~~~--~g~VP~~yP~d~fe~Lw~V 343 (821)
|+..|..||+|..+|. .|-++ ++... -+++.+||.+-.... .++.|+- +.|..-.-|.+
T Consensus 174 l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k-~~D~cysfw~~ 252 (307)
T cd02895 174 IKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNK-PADTCYSFWVG 252 (307)
T ss_pred HHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCCCCC-CCccchhhHHH
Confidence 4556778999999883 22211 22221 236778887766544 2456654 55677778899
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhhhh--ccccccccCCCCCChHHHHHHHHHHHH
Q 003417 344 DRLQRLGISRYFQPEIKECLDYVYRYWT--EEGICWARNTRVQDLDDTSMGFRLLRL 398 (821)
Q Consensus 344 D~LqRLGIs~~F~~EI~~~Ld~i~~~~~--~~gi~~~~~~~~~DlddTAlaFrlLR~ 398 (821)
.+|.=||-...+. .+.+.+.|.++-. ..|....++ ..+|+..|-.++-.|.+
T Consensus 253 a~L~iL~~~~~id--~~~l~~~l~~~q~~~~GGf~~~p~-~~~D~~ht~~~la~Lsl 306 (307)
T cd02895 253 ASLKLLDAFQLID--FEKNRNYLLSTQQSLVGGFAKNPD-SHPDPLHSYLGLAALSL 306 (307)
T ss_pred HHHHHcCcccccC--HHHHHHHHHHHcCCCCCCcCCCCC-CCCChhHHHHHHHHHHh
Confidence 9998887543332 2456666665432 234443333 35899999888877754
No 45
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=80.54 E-value=6.3 Score=43.09 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=40.5
Q ss_pred CChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccC-chhhhhHHHHHHH
Q 003417 142 QFPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIH-HDKCHKGLLFFKE 201 (821)
Q Consensus 142 ~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~-~~~i~~Gl~fl~~ 201 (821)
--..+++||++.|.+||+||...+-.. -...|-.||.+|.--+.- ...+++..+||.+
T Consensus 149 ~~~~~~~~l~~~q~~dGGF~~~~~~es--~~~~t~cavasL~llg~~~~~~~~~~~~~L~~ 207 (287)
T cd02894 149 DVDKAVDYLLSCYNFDGGFGCRPGAES--HAGQIFCCVGALAILGSLDLIDRDRLGWWLCE 207 (287)
T ss_pred hHHHHHHHHHHcCCCCCCcCCCCCCCC--chhHHHHHHHHHHHcCcccccCHHHHHHHHHH
Confidence 368999999999999999996422111 357788888888765422 2346777777765
No 46
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=74.30 E-value=16 Score=40.22 Aligned_cols=117 Identities=20% Similarity=0.247 Sum_probs=72.2
Q ss_pred chHHHhhcccCCCcccC------CccHHHHHHhc---cC-----ch----hHHHHHHHHHHHhcCCCCCCCc--------
Q 003417 280 NWQKLLKLQCQDGSFLF------SPSSTAYALMQ---TK-----DE----NCLKYLTKAVQRFNGGVPNVYP-------- 333 (821)
Q Consensus 280 d~~~v~~~~~~~GS~~~------SPSaTAa~l~~---~~-----d~----~~l~YL~~~v~~~~g~VP~~yP-------- 333 (821)
-.++++.+|..|||+.. |+=.||+++.. .. |+ ++++||.+. ++-+|+.+...|
T Consensus 57 g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~-Q~~dG~f~e~~~~~~~~m~g 135 (297)
T cd02896 57 GYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISN-QKPDGSFQEPSPVIHREMTG 135 (297)
T ss_pred HHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCCCCeeCCCCCccChhccC
Confidence 35677888899999742 22235554321 11 22 467788777 333443322222
Q ss_pred ------cChhHHHHHHHHHHHcCCCCC-----CHHHHHHHHHHHHhhhhccccccccCCCCCChHHHHHHHHHHHHcCCc
Q 003417 334 ------VDIFEHLWAVDRLQRLGISRY-----FQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYD 402 (821)
Q Consensus 334 ------~d~fe~Lw~VD~LqRLGIs~~-----F~~EI~~~Ld~i~~~~~~~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~ 402 (821)
-++--..+++-.|.+.|-... ....|...++++.+... ...+.+.+|++-.+|.+.|.+
T Consensus 136 g~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~----------~~~~~Y~~Al~ayALal~~~~ 205 (297)
T cd02896 136 GVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLP----------NLQRPYALAITAYALALADSP 205 (297)
T ss_pred CccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhcc----------cCCChHHHHHHHHHHHHcCCh
Confidence 233346789999999986432 34567777777776421 135889999999999999986
Q ss_pred cchhh
Q 003417 403 VSAEA 407 (821)
Q Consensus 403 VS~dv 407 (821)
-....
T Consensus 206 ~~~~a 210 (297)
T cd02896 206 LSHAA 210 (297)
T ss_pred hhHHH
Confidence 44443
No 47
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4.2.3.6). TRI5 encodes the enzyme trichodiene synthase, which has been shown to catalyse the first step in the trichothecene pathways of Fusarium and Trichothecium species [, ].; GO: 0045482 trichodiene synthase activity, 0016106 sesquiterpenoid biosynthetic process; PDB: 1YYT_A 2PS5_A 2AEL_A 1YYS_A 1YJ4_A 2Q9Y_A 2PS4_A 2AEK_B 1KIY_B 2PS7_A ....
Probab=73.98 E-value=63 Score=36.92 Aligned_cols=162 Identities=14% Similarity=0.109 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHHHHhhhhhhhhhhcccCCCchhhHhHHHHHHHHHHHHHHHHHHHh
Q 003417 587 QERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVA 666 (821)
Q Consensus 587 ~~Ri~~aK~~~L~tviDD~fD~ygts~eEl~~f~~~f~~~~~~wD~~~~~~lp~~~~~k~~f~~aL~~t~nei~~~~~~~ 666 (821)
+.++..|=..+++.+|||.++.. .+++..|-+.|-..-. - . ..+++-++++-.++.+.
T Consensus 84 evqv~IaiyT~yvi~iDD~~~~~---~~~l~~F~~~l~~Gq~---------Q-~---------~p~L~~~~~~L~~~~~~ 141 (376)
T PF06330_consen 84 EVQVAIAIYTTYVIIIDDSSQEP---SDDLRTFHQRLILGQP---------Q-K---------HPLLDGFASLLREMWRH 141 (376)
T ss_dssp HHHHHHHHHHHHHHHHTT--S-S---HHHHTTHHHHHHHT-------------S---------SHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcccccccc---cHHHHHHHHHHhcCCC---------C-C---------CHHHHHHHHHHHHHHHH
Confidence 67888999999999999997654 4677766543321110 0 1 11123333333333343
Q ss_pred cCcchHHHHHHHHHHHHH-HHhhCCCc---c------------cchHHHHHHHHHhccCcccchhhcCChhHHHHHHHHH
Q 003417 667 NGRDIGGNLREAWEKWLT-TWQDDGNS---H------------WGVAELLVQTINLSAGRLLSEELLCHPEYARLSYLTN 730 (821)
Q Consensus 667 ~g~~i~~~L~~~W~~l~~-~W~~eg~~---~------------~~~~~llv~~~~l~~G~~l~eel~~~p~~~~l~~li~ 730 (821)
=|....+-+.++=.+.+. .|...... | +|.++.....++- .....+.....+|..+..-+.
T Consensus 142 fgpf~anmI~~STLdFi~g~~LE~~~f~~~p~A~~FP~fLR~ktGlsEaYA~FiFP---k~~fpe~~~~~~y~~AIpdl~ 218 (376)
T PF06330_consen 142 FGPFCANMIVKSTLDFINGCWLEQKNFHGSPGAPDFPDFLRRKTGLSEAYAFFIFP---KALFPEVEYFIQYTPAIPDLM 218 (376)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHTTT----TT-TTHHHHHHHHHH-HHHHHHHT-----TTTS-TTTTHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhhcccCCCCCCCccccHHHHhccCcchhheeeecc---cccCChHHHHHHHHHHHHHHH
Confidence 355555555555555554 35433221 1 1333333322221 112222222344443333333
Q ss_pred ---HHhhhhhhhHHHHh-hcccc-ccccchhhhhhcHHHHHHHHHHHH
Q 003417 731 ---RICHTLGHYHKQKV-QVNRN-NNIGNNRITALSVEPDMQELVQLV 773 (821)
Q Consensus 731 ---Rl~~DL~t~~~Ek~-~G~~~-YmkE~~~~i~~~iE~~~rEL~qlv 773 (821)
-+.|||=+|=+|.. .|+.+ |+...-..-...+.+..++|.++.
T Consensus 219 ~fi~~~NDILSFYKE~l~a~E~~NyI~n~A~~~g~S~~eaL~~l~~et 266 (376)
T PF06330_consen 219 RFINYVNDILSFYKEELVAGETGNYIHNRARVHGVSILEALRELTDET 266 (376)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHT--HHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHhhcccccccchhhhhhhccCCCHHHHHHHHHHHH
Confidence 36789888877766 55554 664432112233444555555433
No 48
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=65.62 E-value=6.6 Score=47.45 Aligned_cols=51 Identities=27% Similarity=0.359 Sum_probs=39.7
Q ss_pred hHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHh-hccC-----chhhhhHHHHHHH
Q 003417 145 SSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRS-WNIH-----HDKCHKGLLFFKE 201 (821)
Q Consensus 145 ~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~-w~~~-----~~~i~~Gl~fl~~ 201 (821)
.++++|-..|++||||-+.= +++=|.+..-|+.. |..| ...|+||+.||-.
T Consensus 593 ~av~~ie~~Q~~DGSWyGsW------gvCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~ 649 (760)
T KOG0497|consen 593 KAVEFIEKLQLPDGSWYGSW------GVCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLS 649 (760)
T ss_pred HHHHHHHHcCCCCCcccchh------hHHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHh
Confidence 46899999999999997662 57778877777765 4444 3579999999875
No 49
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=63.21 E-value=1.7e+02 Score=32.35 Aligned_cols=112 Identities=21% Similarity=0.331 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCccChhHHHH----HHHHHHHcCCCCCCHHHHHHHHHHHHhhhhccc-cccccCCCCCC
Q 003417 311 ENCLKYLTKAVQRFNGGVPNVYPVDIFEHLW----AVDRLQRLGISRYFQPEIKECLDYVYRYWTEEG-ICWARNTRVQD 385 (821)
Q Consensus 311 ~~~l~YL~~~v~~~~g~VP~~yP~d~fe~Lw----~VD~LqRLGIs~~F~~EI~~~Ld~i~~~~~~~g-i~~~~~~~~~D 385 (821)
++..+||.+-+...+++ |-.---.++| .|.+|.=||.. ..+.+++.+++.|+++-.+.| .++.++. .+|
T Consensus 2 ~~h~~~~~~~l~~~p~~----~~~~d~~~~~~~y~~l~~l~lL~~~-~~~~~~~~~i~~i~~~q~~~GgF~~~~~~-~~h 75 (299)
T cd02893 2 EKHIKYLKKSLRQLPSS----FTSLDASRPWLLYWILHSLELLGEE-LDQSYADDVISFLRRCQNPSGGFGGGPGQ-LPH 75 (299)
T ss_pred hHHHHHHHHHhhcCCcc----ccccccccHHHHHHHHHHHHHhCCc-ccHHHHHHHHHHHHHhcCCCCCCCCCCCC-Ccc
Confidence 35678888877654332 2221223455 55577888862 345567889999988766544 3333322 468
Q ss_pred hHHHHHHHHHHHHcCCc-----cchhhhhccc-----cCCceeeccCCccchHH
Q 003417 386 LDDTSMGFRLLRLHGYD-----VSAEAFEHFE-----KGGEFFCFVGQSTQAVT 429 (821)
Q Consensus 386 lddTAlaFrlLR~~Gy~-----VS~dvf~~F~-----~~g~F~~~~~e~~~dvs 429 (821)
+-.|=.|...|.+.|.+ +..+.+.+|- .+|.|...++. ..|+.
T Consensus 76 ~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~-e~D~r 128 (299)
T cd02893 76 LATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGG-EVDVR 128 (299)
T ss_pred HHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCC-CchHh
Confidence 88999999999999963 2333343442 57888754332 34443
No 50
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=54.92 E-value=24 Score=39.27 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=34.0
Q ss_pred ChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHH--HHHHHh-hccCchhhhhHHHHHHHh
Q 003417 143 FPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLAC--VVALRS-WNIHHDKCHKGLLFFKEN 202 (821)
Q Consensus 143 Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~--vlAL~~-w~~~~~~i~~Gl~fl~~n 202 (821)
-..+++||..-|.+||||+.... -..|. -.|-.+ +++|.. ++ .-.+++.++||.+.
T Consensus 106 ~~~~~~~l~s~Q~~dGgF~~~~~-ge~D~-r~ty~a~a~l~LL~~~~--~i~~~~~~~~i~sc 164 (316)
T PLN03201 106 ADKVASYVAGLQNEDGSFSGDEW-GEIDT-RFSYCALCCLSLLKRLD--KINVEKAVDYIVSC 164 (316)
T ss_pred HHHHHHHHHHhcCCCCCccCCCC-CCccH-HHHHHHHHHHHHhCccc--hhHHHHHHHHHHHh
Confidence 36799999999999999986321 11222 122222 233332 22 23578999999863
No 51
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=50.97 E-value=61 Score=35.95 Aligned_cols=59 Identities=14% Similarity=0.096 Sum_probs=36.0
Q ss_pred CCChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccC----chhhhhHHHHHHH
Q 003417 141 PQFPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIH----HDKCHKGLLFFKE 201 (821)
Q Consensus 141 p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~----~~~i~~Gl~fl~~ 201 (821)
......++||+..|.+||++|....-.. -.-.|--|+-+|+--+.- ...+++.++||.+
T Consensus 165 ~d~~~li~~l~s~Q~~dGGF~~~~~~Es--h~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~ 227 (307)
T cd02895 165 IDKEKLIDYIKSSQSYDGGFGQGPGLES--HGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVH 227 (307)
T ss_pred ccHHHHHHHHHHccCCCCCccCCCCCCc--cccHHHHHHHHHHHcCCccccccccHHHHHHHHHH
Confidence 3467899999999999999995422111 123455555555543321 2345666666654
No 52
>PLN02710 farnesyltranstransferase subunit beta
Probab=46.26 E-value=2.5e+02 Score=33.02 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=65.7
Q ss_pred chhHHHHHHHHHHHhcCCCCCCCccChhHHH----HHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhccc-cccccCCCCC
Q 003417 310 DENCLKYLTKAVQRFNGGVPNVYPVDIFEHL----WAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEG-ICWARNTRVQ 384 (821)
Q Consensus 310 d~~~l~YL~~~v~~~~g~VP~~yP~d~fe~L----w~VD~LqRLGIs~~F~~EI~~~Ld~i~~~~~~~g-i~~~~~~~~~ 384 (821)
-++.++||++-++. -|..|-..--.|+ |.|..|.=||-. .-...-+.+++.|.++..+.| .+++++. .+
T Consensus 46 ~~~H~~yl~~~l~~----lp~~~~~lDa~r~~~~Yw~L~sL~lLg~~-l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~-~~ 119 (439)
T PLN02710 46 REKHLEYLTRGLRQ----LGPSFSVLDANRPWLCYWILHSIALLGES-LDDELENDTIDFLSRCQDPNGGYGGGPGQ-LP 119 (439)
T ss_pred HHHHHHHHHHHhhc----CChhhhhhhhhhHHHHHHHHHHHHHhCCc-ccHHHHHHHHHHHHHhcCCCcCCCCCCCC-Cc
Confidence 45789999887764 3433333223444 456667778753 112333678888888766443 4444443 46
Q ss_pred ChHHHHHHHHHHHHcCCc-----cchhhhhccc-----cCCceeeccC
Q 003417 385 DLDDTSMGFRLLRLHGYD-----VSAEAFEHFE-----KGGEFFCFVG 422 (821)
Q Consensus 385 DlddTAlaFrlLR~~Gy~-----VS~dvf~~F~-----~~g~F~~~~~ 422 (821)
++-.|=.|.-.|.+.|-+ +..+-+.+|. .+|.|...++
T Consensus 120 hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~ 167 (439)
T PLN02710 120 HLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDG 167 (439)
T ss_pred cHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCC
Confidence 888888888999999953 3334344442 5888975443
No 53
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=41.28 E-value=57 Score=35.45 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=42.7
Q ss_pred ChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhc-cCchhhhhHHHHHHH
Q 003417 143 FPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWN-IHHDKCHKGLLFFKE 201 (821)
Q Consensus 143 Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~-~~~~~i~~Gl~fl~~ 201 (821)
-.+-+.|++.=|++||+.+...+... -|++||+||--|...+ ++--.+++-.+||..
T Consensus 68 ~eeiv~~v~~C~~~~GGfa~~~Ghd~--hll~TlsAvQiL~~ydsi~~~d~d~v~~yi~g 125 (329)
T KOG0366|consen 68 REEIVSFVLSCQHEDGGFAGCPGHDP--HLLYTLSAVQILALYDSINVLDRDKVASYIKG 125 (329)
T ss_pred HHHHHHHHHheecCCCCcCCCCCCCh--HHHHHHHHHHHHHHHcccccccHHHHHHHHHh
Confidence 46789999999999999986543322 5999999999888766 433445566677765
No 54
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=40.98 E-value=35 Score=41.59 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=48.5
Q ss_pred ChhHHHHHHhccCCCCCCCCCC------CCCc----hhhHhhhHHHHHHHHhhccC---chhhhhHHHHHHHhHhhhhcc
Q 003417 143 FPSSLHWIANSQLPDGSWGDHL------LFSA----HDRLINTLACVVALRSWNIH---HDKCHKGLLFFKENISKLENE 209 (821)
Q Consensus 143 Fp~~~~wil~nQ~~DGsWG~~~------~~~~----~d~ll~TLA~vlAL~~w~~~---~~~i~~Gl~fl~~nl~~~~~~ 209 (821)
=..++++||..|++||+||..- -+.. .--+++|.=|+.||---+-- +-.++||..+|- |.+.-..+
T Consensus 640 irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~li-nsQ~~nGd 718 (760)
T KOG0497|consen 640 IRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLI-NSQLENGD 718 (760)
T ss_pred HHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHH-hcccccCC
Confidence 4567999999999999999651 1111 33589999999999764422 225899998887 33333333
Q ss_pred CCCCCCce
Q 003417 210 NDEHMPIG 217 (821)
Q Consensus 210 ~~~~~~vg 217 (821)
-++...+|
T Consensus 719 fpqq~i~g 726 (760)
T KOG0497|consen 719 FPQQEIEG 726 (760)
T ss_pred cchhHHHH
Confidence 23344444
No 55
>PLN02710 farnesyltranstransferase subunit beta
Probab=39.02 E-value=55 Score=38.25 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=38.2
Q ss_pred hhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccC----chhhhhHHHHHHH
Q 003417 144 PSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIH----HDKCHKGLLFFKE 201 (821)
Q Consensus 144 p~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~----~~~i~~Gl~fl~~ 201 (821)
...++||..-|.+||+.|+..+.. --+.+|.+||.+|.-=+-. .-..++-++||.+
T Consensus 95 ~~ii~~l~~cQ~~dGGFgg~pg~~--~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s 154 (439)
T PLN02710 95 NDTIDFLSRCQDPNGGYGGGPGQL--PHLATTYAAVNTLVTIGGERALSSINREKLYTFLLR 154 (439)
T ss_pred HHHHHHHHHhcCCCcCCCCCCCCC--ccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHH
Confidence 468999999999999998643222 2589999999998653311 1123556666654
No 56
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=32.25 E-value=91 Score=33.24 Aligned_cols=109 Identities=30% Similarity=0.397 Sum_probs=65.9
Q ss_pred hHHHhhcccCCCcccC----CccH---HHHHHhc---cC-----c----hhHHHHHHHHHHHhcCCCCCCCcc-------
Q 003417 281 WQKLLKLQCQDGSFLF----SPSS---TAYALMQ---TK-----D----ENCLKYLTKAVQRFNGGVPNVYPV------- 334 (821)
Q Consensus 281 ~~~v~~~~~~~GS~~~----SPSa---TAa~l~~---~~-----d----~~~l~YL~~~v~~~~g~VP~~yP~------- 334 (821)
.++++.++..||||.. +|++ ||+.+.- .. | .++++||.+. ++-+|..+...|+
T Consensus 3 Yqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~-Q~~dG~F~e~~~~~~~~~~g 81 (246)
T PF07678_consen 3 YQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQ-QQPDGSFEEDGPVIHREMQG 81 (246)
T ss_dssp HHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHH-BETTSEB--SSS-SSGGGSG
T ss_pred hHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHh-hcCCCccccCCCccccccCC
Confidence 3688999999999633 4444 4554321 11 3 3678888887 4444443322221
Q ss_pred ----ChhHHHHHHHHHHHcC-----CCCCCHHHHHHHHHHHHhhhhccccccccCCCCCChHHHHHHHHHHHHcC
Q 003417 335 ----DIFEHLWAVDRLQRLG-----ISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHG 400 (821)
Q Consensus 335 ----d~fe~Lw~VD~LqRLG-----Is~~F~~EI~~~Ld~i~~~~~~~gi~~~~~~~~~DlddTAlaFrlLR~~G 400 (821)
++.=-..++-+|.+.| ........|+..++++.+.. ....|.++.|+.=.+|.+.|
T Consensus 82 ~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~----------~~~~~~Y~lAl~aYAL~la~ 146 (246)
T PF07678_consen 82 GVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHL----------DNIQDPYTLALVAYALALAG 146 (246)
T ss_dssp GGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHH----------GCTSSHHHHHHHHHHHHHTT
T ss_pred CCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhc----------cccCCHHHHHHHHHHHHhhc
Confidence 2233467888899888 12234566666666665541 11368999999999999998
No 57
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=28.73 E-value=9.5 Score=27.00 Aligned_cols=14 Identities=50% Similarity=0.980 Sum_probs=6.8
Q ss_pred HHhccCCCCCCCCC
Q 003417 150 IANSQLPDGSWGDH 163 (821)
Q Consensus 150 il~nQ~~DGsWG~~ 163 (821)
|-..|++||+|--+
T Consensus 5 I~~s~RpDGt~RK~ 18 (27)
T PF09282_consen 5 IPASQRPDGTWRKE 18 (27)
T ss_dssp E--EE-TTS-EE--
T ss_pred cCcccCCCCCcccc
Confidence 45689999999643
No 58
>PLN02592 ent-copalyl diphosphate synthase
Probab=23.94 E-value=2.7e+02 Score=35.22 Aligned_cols=78 Identities=15% Similarity=0.287 Sum_probs=52.3
Q ss_pred ChhHHHH--HHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccCchhhhhHHHHHHHhHhhhhccCCCCCCceEeE
Q 003417 143 FPSSLHW--IANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIHHDKCHKGLLFFKENISKLENENDEHMPIGFEV 220 (821)
Q Consensus 143 Fp~~~~w--il~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~~~~i~~Gl~fl~~nl~~~~~~~~~~~~vgfei 220 (821)
++. ++| ++..|..|||=+... .+|.|++.. +|+ +++++||++-+.+..+.++..-|+.. .
T Consensus 250 l~~-~dw~~v~~~q~~~GS~~~SP--------SaTAaaL~~--~~d------~~cl~YL~~~~~k~~GgVP~vyP~d~-f 311 (800)
T PLN02592 250 MPG-LDWEKLLKLQCQDGSFLFSP--------SSTAFALMQ--TKD------ENCLEYLNKAVQRFNGGVPNVYPVDL-F 311 (800)
T ss_pred ccc-CCHHHHhcccCCCCCccCCc--------hHHHHHHhc--cCc------hHHHHHHHHHHHHcCCCCCCCCCCcH-H
Confidence 444 566 788899999877542 467777753 444 68899999988887665655555531 1
Q ss_pred ehhHHHHHHHhCCCCCCC
Q 003417 221 AFPSLLEIARSLDIEVPY 238 (821)
Q Consensus 221 i~P~Ll~~a~~lgl~~p~ 238 (821)
--=.|++-++++|+.-.+
T Consensus 312 E~LwlVDtLqRLGIs~hF 329 (800)
T PLN02592 312 EHIWAVDRLQRLGISRYF 329 (800)
T ss_pred HHHHHHHHHHHcCCcccc
Confidence 123577888899987543
No 59
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.25 E-value=5.2e+02 Score=27.69 Aligned_cols=94 Identities=19% Similarity=0.156 Sum_probs=62.1
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhccccccccCCCCCChHHHHHHHHHHHHcCCccchhhhhcccc-
Q 003417 335 DIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYDVSAEAFEHFEK- 413 (821)
Q Consensus 335 d~fe~Lw~VD~LqRLGIs~~F~~EI~~~Ld~i~~~~~~~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~VS~dvf~~F~~- 413 (821)
+..|-..+++++.++ ..|...+|+++..-..-+. .|++.|-+. |.-.|-++|.+|--||-...-+-.++|+.
T Consensus 121 ~~Le~ty~~~~~l~~-~n~~~~eE~k~~v~~~~re---~~~g~~YGv---~~pnt~~t~~aly~l~~k~~~~~v~~Fe~~ 193 (274)
T COG1689 121 TPLEATYWMMSALNM-VNYEYLEEMKEKVIEFVRE---FGIGDAYGV---THPNTTMTYQALYTLGSKGPKEEVRHFELC 193 (274)
T ss_pred chHHHHHHHHHHHHH-hCcCchHHHHHHHHHHhhh---hcccccccc---CCcchHHHHHHHHhhccccchHHHHhHHhc
Confidence 345666667776665 3344578887766555443 344444442 55678999999999998888888899983
Q ss_pred ---CCceeeccCCccchHHHHHhHH
Q 003417 414 ---GGEFFCFVGQSTQAVTGVYNLY 435 (821)
Q Consensus 414 ---~g~F~~~~~e~~~dvs~~l~Ly 435 (821)
.|.|.--|+.+-|-+.....-+
T Consensus 194 c~~~Ggf~~~P~syPPYiE~t~ya~ 218 (274)
T COG1689 194 CGDWGGFTEVPNSYPPYIEPTFYAL 218 (274)
T ss_pred cccCCCcccCCCCCCCccchHHHHH
Confidence 3778666777666555544333
No 60
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=20.43 E-value=2.1e+02 Score=24.67 Aligned_cols=47 Identities=11% Similarity=0.060 Sum_probs=34.3
Q ss_pred ccCCCcHHHHHHHHHHHHhhhhhhhhhhcccCCCchhhHhHHHHHHHHHHHHHHHHH
Q 003417 607 DKQKDSCKQRRAFVREFRNCISAWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDA 663 (821)
Q Consensus 607 D~ygts~eEl~~f~~~f~~~~~~wD~~~~~~lp~~~~~k~~f~~aL~~t~nei~~~~ 663 (821)
.+.|+|.||++.++. ++|++-.. .-||+ .-.+| .++++..++-..+.
T Consensus 9 nv~~~s~~elk~~I~---daI~sgEE---k~LPG---LGVlF-E~~W~~~~~~ek~~ 55 (65)
T TIGR03092 9 NISNNTKEQLEATIV---DAIQSGEE---KMLPG---LGVLF-EAIWKHANEQEKDE 55 (65)
T ss_pred HhcCCCHHHHHHHHH---HHHhccch---hcCCc---cHHHH-HHHHHhcCHHHHHH
Confidence 456778999999864 67776433 23677 67888 99999888866543
No 61
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=20.34 E-value=2.1e+02 Score=24.96 Aligned_cols=47 Identities=6% Similarity=0.017 Sum_probs=34.6
Q ss_pred ccCCCcHHHHHHHHHHHHhhhhhhhhhhcccCCCchhhHhHHHHHHHHHHHHHHHHH
Q 003417 607 DKQKDSCKQRRAFVREFRNCISAWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDA 663 (821)
Q Consensus 607 D~ygts~eEl~~f~~~f~~~~~~wD~~~~~~lp~~~~~k~~f~~aL~~t~nei~~~~ 663 (821)
.+.|+|.||++.++. ++|++-.. .-||+ .-.+| .++++..++-..+.
T Consensus 12 nv~g~s~eel~~~I~---daIqsgEE---k~LPG---LGVlF-E~~W~~~~~~ek~~ 58 (68)
T PRK02955 12 NVSGNSKEELEGTIV---DAIQSGEE---KMLPG---LGVLF-EVIWKNADENEKDE 58 (68)
T ss_pred HccCCCHHHHHHHHH---HHHhccch---hcCCc---chhHH-HHHHHhcCHHHHHH
Confidence 467888999999864 67776433 34777 78888 99999888766543
No 62
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.27 E-value=1.3e+03 Score=26.39 Aligned_cols=214 Identities=19% Similarity=0.285 Sum_probs=121.5
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhhhhc-cccccccCCCCCChHH
Q 003417 311 ENCLKYLTKAVQRFNGGVPNVYPVDIFEHLWAVDRLQRLGISRYFQ-PEIKECLDYVYRYWTE-EGICWARNTRVQDLDD 388 (821)
Q Consensus 311 ~~~l~YL~~~v~~~~g~VP~~yP~d~fe~Lw~VD~LqRLGIs~~F~-~EI~~~Ld~i~~~~~~-~gi~~~~~~~~~Dldd 388 (821)
++-+.||...++.......+.=-....=.-|++..|+=||- .+. +-++.+.+.+.++-.+ .|-|+|++.. +-+-.
T Consensus 75 ~kH~~YL~~~Lr~Lp~~~~~LDASR~Wm~YWil~sl~lL~~--~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl-~HLA~ 151 (423)
T KOG0365|consen 75 QKHLMYLDKMLRQLPSQYTCLDASRPWMCYWILNSLALLDE--WLDDDVKENAIDFLFTCQGPEGGFGGGPGQL-PHLAP 151 (423)
T ss_pred HHHHHHHHHHHHhCCCcccccccCcchhHHHHHHHHHHhcC--cCCHHHHHHHHHHHHhcCCCCCCCCCCCccc-hhhhH
Confidence 57889999999875432222111122334577778888885 233 3346788888887654 4577777653 45666
Q ss_pred HHHHHHHHHHcCCccch-----hhh----hccc-cCCceeeccCCccchHHHHH-hHHhhhccCCCChhHHHHHHHHHHH
Q 003417 389 TSMGFRLLRLHGYDVSA-----EAF----EHFE-KGGEFFCFVGQSTQAVTGVY-NLYRASQVLFPGEKILGHAKQFSAK 457 (821)
Q Consensus 389 TAlaFrlLR~~Gy~VS~-----dvf----~~F~-~~g~F~~~~~e~~~dvs~~l-~Ly~AS~l~~~gE~iL~eA~~fs~~ 457 (821)
|=.|.-.|-..|-.--- +-+ ..-+ .+|.|+...+ -.-|+++.+ .+=-|+-+.++.+++-+- +..
T Consensus 152 TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~-GE~DvRs~YcA~svasllni~~deL~eG----~~~ 226 (423)
T KOG0365|consen 152 TYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVE-GEVDVRSAYCALSVASLLNIPMDELFEG----TLD 226 (423)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecC-CcchHHHHHHHHHHHHHHCCCcHHHHHH----HHH
Confidence 76677777666633211 223 3334 7899987644 235666654 333456677776655553 345
Q ss_pred HHHHHhhccchhhhhhcCCChhHHHHhccCccccccchhHHHHHHHHhcCCCcchhhhhhccCCCCCCHHHHHHHHhhhh
Q 003417 458 YLKAKTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGKTLYRMPYVNNDVYLELAKLDYN 537 (821)
Q Consensus 458 ~L~~~~~~~~~Dkw~~s~~l~~eV~~aL~~P~~~~l~RleaR~yIe~Y~~~~~~wi~Kt~Yrm~~v~n~~lLeLAklDFn 537 (821)
|+.+.+.= +.-+ -..|-+||- || =++-.+|-+ -
T Consensus 227 wi~~CQty--------EGG~-------------GG~P~~EAH------GG------------------YTFCalAal--a 259 (423)
T KOG0365|consen 227 WIASCQTY--------EGGF-------------GGEPGVEAH------GG------------------YTFCALAAL--A 259 (423)
T ss_pred HHHhcccc--------cCCc-------------CCCcccccc------CC------------------eeHHHHHHH--H
Confidence 77664421 0111 122333332 21 123333332 1
Q ss_pred hhhhchhhhHHHHHHHHHhcCC-CcCCc-ch-hhHHH-HH-HHHhhc
Q 003417 538 NCQAVHRTEWDSLQKWYAACKL-DKFGI-TR-RALLL-AY-FVASAS 579 (821)
Q Consensus 538 ~~Qs~hq~El~~l~rWw~e~~l-~~l~f-aR-~r~ve-~Y-f~aaa~ 579 (821)
++-.+-|-.++.|.+|-..-.. .+.+| .| +++|. || ||.+|+
T Consensus 260 lLn~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFWvga~ 306 (423)
T KOG0365|consen 260 LLNEMDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDGCYSFWVGAS 306 (423)
T ss_pred HHhhhhhhCHHHHHHHHHHhhhhhhccccccccchhhhhHHHHhcch
Confidence 3445566677888999887666 36777 45 68876 77 777665
No 63
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.00 E-value=1.4e+02 Score=32.66 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=32.3
Q ss_pred hhHHHHHHhccCCCCCCCCCCCCCchh-hHhhhHHHHHHHHhhccCchhhhhHHHHHHH
Q 003417 144 PSSLHWIANSQLPDGSWGDHLLFSAHD-RLINTLACVVALRSWNIHHDKCHKGLLFFKE 201 (821)
Q Consensus 144 p~~~~wil~nQ~~DGsWG~~~~~~~~d-~ll~TLA~vlAL~~w~~~~~~i~~Gl~fl~~ 201 (821)
-.-..||.-.|.+|||-.+.. +-.+| |++-+.-|-++|..-. ..-.+++|+.|+.+
T Consensus 117 d~v~~yi~gLq~edGsF~gD~-wGEvDTRfs~~av~~L~lLg~l-d~~nve~aVd~~~~ 173 (329)
T KOG0366|consen 117 DKVASYIKGLQQEDGSFSGDI-WGEVDTRFSYCAVACLALLGKL-DTINVEKAVDFVLS 173 (329)
T ss_pred HHHHHHHHhhcCcCCcccCCc-ccccchhhhHHHHHHHHHHhhH-HHhhHHHHHHHHHh
Confidence 345899999999999954321 11111 3333333333433211 12457899999987
Done!