Query 003417
Match_columns 821
No_of_seqs 285 out of 876
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 00:29:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pya_A ENT-copalyl diphosphate 100.0 5E-202 2E-206 1764.2 60.9 700 96-820 7-720 (727)
2 3s9v_A Abietadiene synthase, c 100.0 5E-197 2E-201 1742.4 66.7 711 96-820 29-785 (785)
3 3sdr_A Alpha-bisabolene syntha 100.0 1E-196 3E-201 1746.0 62.9 713 97-821 53-817 (817)
4 3p5p_A Taxadiene synthase; cla 100.0 2E-195 6E-200 1724.9 61.7 706 96-821 6-756 (764)
5 3n0f_A Isoprene synthase; terp 100.0 8E-115 3E-119 1001.1 43.1 485 292-820 16-551 (555)
6 2ong_A 4S-limonene synthase; m 100.0 4E-114 1E-118 1000.4 40.6 488 291-820 13-543 (543)
7 3g4d_A (+)-delta-cadinene synt 100.0 5E-113 2E-117 984.6 42.2 482 293-821 24-554 (554)
8 3m00_A Aristolochene synthase; 100.0 2E-112 6E-117 979.5 42.2 481 292-821 18-550 (550)
9 2j5c_A 1,8-cineole synthase; t 100.0 2E-112 7E-117 988.6 40.0 486 284-820 37-569 (569)
10 1n1b_A (+)-bornyl diphosphate 100.0 5E-112 2E-116 982.6 38.1 496 284-820 8-549 (549)
11 1ps1_A Pentalenene synthase; a 99.9 2.9E-27 1E-31 258.5 13.8 222 536-773 11-270 (337)
12 1di1_A Aristolochene synthase; 99.9 1.2E-25 4.2E-30 241.4 16.3 212 542-773 13-264 (300)
13 3bny_A Aristolochene synthase; 99.9 1.1E-24 3.7E-29 236.5 16.2 219 535-773 20-278 (320)
14 3kb9_A EPI-isozizaene synthase 99.9 1.1E-21 3.7E-26 218.8 15.7 209 549-771 65-310 (382)
15 3v1v_A 2-MIB synthase, 2-methy 99.0 2.9E-09 9.9E-14 120.4 13.1 199 549-755 134-365 (433)
16 2sqc_A Squalene-hopene cyclase 97.9 0.0028 9.6E-08 74.8 28.2 415 117-561 34-588 (631)
17 1w6k_A Lanosterol synthase; cy 97.8 0.00094 3.2E-08 80.2 22.5 102 98-202 71-183 (732)
18 3dss_B Geranylgeranyl transfer 97.5 0.0011 3.8E-08 72.2 15.2 215 143-402 68-304 (331)
19 2h6f_B Protein farnesyltransfe 96.8 0.013 4.6E-07 66.1 14.6 101 99-201 74-183 (437)
20 1w6k_A Lanosterol synthase; cy 96.2 0.072 2.5E-06 63.9 17.1 90 311-402 561-665 (732)
21 1qqf_A Protein (complement C3D 95.8 0.02 6.7E-07 60.3 8.5 85 120-204 64-172 (277)
22 1hzf_A Complement factor C4A; 95.5 0.023 8E-07 62.5 8.2 84 120-203 117-227 (367)
23 2wy7_A Complement C3D fragment 95.3 0.036 1.2E-06 59.3 8.6 85 120-204 80-188 (310)
24 1n4q_B Geranyltransferase type 94.6 0.5 1.7E-05 52.2 15.4 256 100-402 22-335 (377)
25 4acq_A Alpha-2-macroglobulin; 93.5 0.12 4.2E-06 66.5 8.8 88 120-207 1013-1113(1451)
26 2h6f_B Protein farnesyltransfe 93.4 0.097 3.3E-06 59.0 6.9 73 126-201 206-279 (437)
27 3dss_B Geranylgeranyl transfer 93.3 0.12 4.2E-06 56.1 7.1 97 100-201 116-221 (331)
28 2sqc_A Squalene-hopene cyclase 92.7 0.11 3.8E-06 61.3 6.2 79 121-202 444-526 (631)
29 1yyq_A Trichodiene synthase; t 90.1 2.9 0.0001 46.0 13.7 183 545-749 30-241 (374)
30 2hr0_B Complement C3 alpha' ch 89.8 0.64 2.2E-05 57.1 9.0 87 119-205 324-434 (915)
31 1n4q_B Geranyltransferase type 84.5 1.6 5.6E-05 48.1 7.5 97 101-201 145-254 (377)
32 1hzf_A Complement factor C4A; 83.0 1.2 4.1E-05 48.7 5.7 56 144-201 94-153 (367)
33 1gxm_A Pectate lyase; mechanis 82.0 0.77 2.6E-05 49.7 3.5 55 143-201 99-180 (332)
34 3q7a_B Farnesyltransferase bet 81.2 1.6 5.5E-05 50.0 5.9 100 99-201 62-178 (520)
35 1qqf_A Protein (complement C3D 79.1 2.5 8.5E-05 44.1 6.2 55 145-201 42-100 (277)
36 2wy7_A Complement C3D fragment 77.7 2.8 9.6E-05 44.5 6.2 55 145-201 58-116 (310)
37 1r76_A Pectate lyase; A-helica 75.0 1.9 6.6E-05 47.9 4.1 20 143-162 177-196 (408)
38 3q7a_B Farnesyltransferase bet 73.2 2.9 0.0001 47.9 5.0 55 144-201 170-226 (520)
39 2pn5_A TEP1R, thioester-contai 71.7 6.2 0.00021 50.3 8.1 86 119-204 897-998 (1325)
40 4fxk_B Complement C4-A alpha c 57.2 25 0.00085 42.0 9.1 102 103-204 370-505 (767)
41 2b39_A C3; thioester, immune d 52.3 21 0.00073 46.6 8.0 87 119-205 1071-1181(1661)
42 2pn5_A TEP1R, thioester-contai 52.1 14 0.00049 47.0 6.2 56 145-202 876-936 (1325)
43 2hr0_B Complement C3 alpha' ch 48.0 7.7 0.00026 47.5 2.7 52 122-184 481-533 (915)
44 1r76_A Pectate lyase; A-helica 46.6 9.1 0.00031 42.5 2.7 61 141-201 245-325 (408)
45 1vhf_A Periplasmic divalent ca 43.2 9.8 0.00034 34.8 2.0 69 74-160 40-108 (113)
46 3cu7_A Complement C5; Mg domai 43.1 29 0.001 45.3 7.1 88 118-205 1071-1181(1676)
47 2pmv_A Gastric intrinsic facto 34.2 38 0.0013 37.5 5.2 53 144-205 186-241 (399)
48 3prx_B Cobra venom factor; imm 33.8 8.7 0.0003 50.1 0.0 87 120-206 1056-1166(1642)
49 4acq_A Alpha-2-macroglobulin; 31.9 39 0.0013 43.6 5.5 57 145-202 987-1050(1451)
50 2bb6_A TCII, TC II, transcobal 31.0 23 0.0008 39.4 2.9 75 97-182 201-281 (414)
51 1gxm_A Pectate lyase; mechanis 29.7 34 0.0012 36.9 3.8 56 145-201 35-108 (332)
52 2pmv_A Gastric intrinsic facto 28.5 54 0.0019 36.3 5.2 75 99-184 180-259 (399)
53 3p5p_A Taxadiene synthase; cla 26.8 68 0.0023 38.5 6.0 77 143-236 185-263 (764)
54 3sdr_A Alpha-bisabolene syntha 26.3 66 0.0023 38.9 5.8 77 143-236 237-315 (817)
55 3s9v_A Abietadiene synthase, c 21.9 1.7E+02 0.0058 35.2 8.2 77 143-236 209-287 (785)
56 2nuh_A Periplasmic divalent ca 20.5 39 0.0013 31.1 1.8 69 74-160 43-111 (118)
No 1
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=5e-202 Score=1764.16 Aligned_cols=700 Identities=60% Similarity=1.067 Sum_probs=660.6
Q ss_pred chhhHHHHHHHHHHHhccCCCCCcccchhhhhhhhccccCCCCCCCCChhHHHHHHhccCCCCCCCCCCCCCchhhHhhh
Q 003417 96 ASNEIKERVHAIKSMLGSMEDGEISVSAYDTAWVALVEDIQGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSAHDRLINT 175 (821)
Q Consensus 96 ~~~~~~~~~~~i~~~~~~~~~g~~S~S~YDTAWVAmvp~~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~T 175 (821)
.++++++++++||+||.+|++|++|||+||||||||||++ +++||||+||+|||+||++|||||++++++.+|||+||
T Consensus 7 ~~~~~~~~~~~ir~~l~~~~~g~~S~S~YDTAWVAmvp~~--~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~T 84 (727)
T 3pya_A 7 NSNAFKEAVKSVKTILRNLTDGEITISAYDTAWVALIDAG--DKTPAFPSAVKWIAENQLSDGSWGDAYLFSYHDRLINT 84 (727)
T ss_dssp -CCHHHHHHHHHHHHHHTCCSCCCCCCHHHHHHHHTCBCS--SSSBSCHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccCCcccCcHHHhHHHhhccCC--CCCCCCHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHH
Confidence 4678999999999999999999999999999999999998 56899999999999999999999998878999999999
Q ss_pred HHHHHHHHhhccCchhhhhHHHHHHHhHhhhhccCCCCCCceEeEehhHHHHHHHhCCCCCCCCChhhHHHHHHhhhhhc
Q 003417 176 LACVVALRSWNIHHDKCHKGLLFFKENISKLENENDEHMPIGFEVAFPSLLEIARSLDIEVPYDSPVLQKIYDKRNLKLT 255 (821)
Q Consensus 176 LA~vlAL~~w~~~~~~i~~Gl~fl~~nl~~~~~~~~~~~~vgfeii~P~Ll~~a~~lgl~~p~~~~~l~~l~~~r~~kL~ 255 (821)
||||+||++||+|+++|+||++||++|+++|++++.+++|||||||||+||++|+++||+||++.|.+..|.++|+.||+
T Consensus 85 LAcvlAL~~w~~~~~~i~rGl~fl~~nl~~~~~~~~~~~pvGfeiifP~Ll~~a~~~gl~~p~~~~~l~~i~~~r~~kL~ 164 (727)
T 3pya_A 85 LACVVALRSWNLFPHQCNKGITFFRENIGKLEDENDEHMPIGFEVAFPSLLEIARGINIDVPYDSPVLKDIYAKKELKLT 164 (727)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHGGGTTCCSSCCCCTTHHHHHHHHHHHHHHTTCCSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhccCCCCCCceeeeeHHHHHHHHHHcCcCCCCCchHHHHHHHhHHHHHh
Confidence 99999999999999999999999999999998776789999999999999999999999999999999999999999999
Q ss_pred CCCCccccccchhHHHHHhcCCCcchHHHhhcccCCCcccCCccHHHHHHhccCchhHHHHHHHHHHHhcCCCCCCCccC
Q 003417 256 RIPKDIMHNVPTTLLHSLEGMPDLNWQKLLKLQCQDGSFLFSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVPNVYPVD 335 (821)
Q Consensus 256 r~~~~~~~~~p~~llhslEgl~~~d~~~v~~~~~~~GS~~~SPSaTAa~l~~~~d~~~l~YL~~~v~~~~g~VP~~yP~d 335 (821)
|++++.+|+.|++|+||||||+++||++++|+|++||||++||||||||||+++|++|++||+++|++++|+||++||+|
T Consensus 165 r~~~~~~~~~p~~llhslEgl~~~dw~~~~~~q~~~GS~~~SPsaTAa~l~~~~d~~~l~YL~~~v~k~~g~VP~~yP~d 244 (727)
T 3pya_A 165 RIPKEIMHKIPTTLLHSLEGMRDLDWEKLLKLQSQDGSFLFSPSSTAFAFMQTRDSNCLEYLRNAVKRFNGGVPNVFPVD 244 (727)
T ss_dssp HSCHHHHTTSCCGGGGGGGGCCCCCHHHHGGGCCTTSSBTTBHHHHHHHHHHHCCHHHHHHHHHHHHHTTTCCCSSCCCH
T ss_pred CCChhhccCCCchHHHHHhcccccCHHHHhcccCCCCCcccCHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhccccccccCCCCCChHHHHHHHHHHHHcCCccchhhhhccccCC
Q 003417 336 IFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYDVSAEAFEHFEKGG 415 (821)
Q Consensus 336 ~fe~Lw~VD~LqRLGIs~~F~~EI~~~Ld~i~~~~~~~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~VS~dvf~~F~~~g 415 (821)
+||+||+||+||||||+|||++||+++|+++|++|.++|++++++....|+|+|||+|||||||||+||||||++|+++|
T Consensus 245 ~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tAL~FRLLRqhGy~VS~DvF~~Fk~~G 324 (727)
T 3pya_A 245 LFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFEKEG 324 (727)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHHHHHHHHHHTTCCCCGGGGGGGEETT
T ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHHHHHHHHHhCCCCCCHHHHHhccCCC
Confidence 99999999999999999999999999999999999888888876665689999999999999999999999999999999
Q ss_pred ceeeccCCccchHHHHHhHHhhhccCCCChhHHHHHHHHHHHHHHHHhhc-cchhhhhhcCCChhHHHHhccCccccccc
Q 003417 416 EFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSAKYLKAKTAA-DLLDKWIIAKDLPGEVAFAMEVPWYACLP 494 (821)
Q Consensus 416 ~F~~~~~e~~~dvs~~l~Ly~AS~l~~~gE~iL~eA~~fs~~~L~~~~~~-~~~Dkw~~s~~l~~eV~~aL~~P~~~~l~ 494 (821)
+|+|+.+++.+|++||||||||||+++|||.||++|+.||++||++.+.. .+.|||+++++|++||+|||++|||+++|
T Consensus 325 ~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~dkw~~~~~L~~~V~~aL~~P~~~~l~ 404 (727)
T 3pya_A 325 EFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLP 404 (727)
T ss_dssp EECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCCCCSSEECSCHHHHHHHHHHSCGGGCCH
T ss_pred cccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCcccccccCCcHHHHHHHHhcCcHhcCCh
Confidence 99999999999999999999999999999999999999999999987765 78899999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCcchhhhhhccCCCCCCHHHHHHHHhhhhhhhhchhhhHHHHHHHHHhcCCCcCCcchhhHHHHHH
Q 003417 495 RLETRLYIEQYGGEDDVWIGKTLYRMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKLDKFGITRRALLLAYF 574 (821)
Q Consensus 495 RleaR~yIe~Y~~~~~~wi~Kt~Yrm~~v~n~~lLeLAklDFn~~Qs~hq~El~~l~rWw~e~~l~~l~faR~r~ve~Yf 574 (821)
|||||+||++|++++++|||||+||||+++|++||||||+|||+||++||+||++|+||||++||++|||+|||+|||||
T Consensus 405 RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~l~faRdr~ve~Yf 484 (727)
T 3pya_A 405 RVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLSEWGVRRSELLECYY 484 (727)
T ss_dssp HHHHHHHHHHCCGGGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHhhhheeHHhcCcccCCchhhHHHHHHH
Confidence 99999999999988899999999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHhhcccCCcchhHHHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHHHHhhhh-------hhhhhhccc---CCCchhh
Q 003417 575 VASASIYEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCIS-------AWDYINRRR---WDSNKKG 644 (821)
Q Consensus 575 ~aaa~~fEPe~s~~Ri~~aK~~~L~tviDD~fD~ygts~eEl~~f~~~f~~~~~-------~wD~~~~~~---lp~~~~~ 644 (821)
|++|++||||||.+|++|||+++|+|||||+||+|| |||++||++|++|+. +|+. .+. .|+|++|
T Consensus 485 w~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG---eEl~~ft~av~rwd~~~~~~~~~~~~--~~~~~~~p~~~~m 559 (727)
T 3pya_A 485 LAAATIFESERSHERMVWAKSSVLVKAISSSFGESS---DSRRSFSDQFHEYIANARRSDHHFND--RNMRLDRPGSVQA 559 (727)
T ss_dssp HHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH---HHHHHHHHHHHHHC---------------------CHHHHH
T ss_pred HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHhcccccccccccccc--hhhcccCCCcHHH
Confidence 999999999999999999999999999999999999 999999998876663 2322 111 2888889
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHhhCCCcccchHHHHHHHHHhccCcccchhhcCChhHHH
Q 003417 645 ERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLTTWQDDGNSHWGVAELLVQTINLSAGRLLSEELLCHPEYAR 724 (821)
Q Consensus 645 k~~f~~aL~~t~nei~~~~~~~~g~~i~~~L~~~W~~l~~~W~~eg~~~~~~~~llv~~~~l~~G~~l~eel~~~p~~~~ 724 (821)
|+|| .|||||+|||+.++++.||+|+++||+++|++|+++|..|+. .+.+++++++|++++|+.++| ++++|+|.+
T Consensus 560 k~~f-~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~--~~EAellv~~I~l~sG~~l~e-~l~~~ey~~ 635 (727)
T 3pya_A 560 SRLA-GVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD--EGEGELMVKMIILMKNNDLTN-FFTHTHFVR 635 (727)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHSSSCGGG-GGSSHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc--ccceeeeeeeeecCCCcchHh-hccChhHHH
Confidence 9999 999999999999999999999999999999999999999988 577899999999999999999 999999999
Q ss_pred HHHHHHHHh---hhhhhhHHHHhhccccccccchhhhhhcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhcc
Q 003417 725 LSYLTNRIC---HTLGHYHKQKVQVNRNNNIGNNRITALSVEPDMQELVQLVLQNSSSGIGSDVKQTFLTVAKSFYYCAY 801 (821)
Q Consensus 725 l~~li~Rl~---~DL~t~~~Ek~~G~~~YmkE~~~~i~~~iE~~~rEL~qlvl~~~~~~vp~~~Kq~flnvaR~fyY~a~ 801 (821)
|+++++++| |||++|++|+.+ +++++||++||||+|+|+++++++||++| +|++|+|+|||.+|
T Consensus 636 L~~ltn~icrllndl~~~~~E~~~-----------~~~~~IE~~mqEL~~lVl~~~~~~ip~~~--tf~~V~ksFYy~ay 702 (727)
T 3pya_A 636 LAEIINRICLPRQYLKARRNDEKE-----------KTIKSMEKEMGKMVELALSESDTFRDVSI--TFLDVAKAFYYFAL 702 (727)
T ss_dssp HHHHHHHHSCCCC------CHHHH-----------HHHHHHHHHHHHHHHHHHSCCTTTHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhccCCCCCCCcc--cHHHHHHHHHhhhc
Confidence 999999999 999999998843 67889999999999999998767999999 99999999999999
Q ss_pred CChHHHHHHHhhccccccC
Q 003417 802 CDAETINSHIGKVLFQTVD 820 (821)
Q Consensus 802 ~~~~~ik~hI~kVLfEPI~ 820 (821)
|+|+ |+.||+|||||||-
T Consensus 703 ~~p~-i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 703 CGDH-LQTHISKVLFQKVG 720 (727)
T ss_dssp HTTS-CHHHHHHHHHSCCC
T ss_pred CCHH-HHHHHHHHHcCccc
Confidence 9998 99999999999984
No 2
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=5.3e-197 Score=1742.35 Aligned_cols=711 Identities=38% Similarity=0.730 Sum_probs=667.9
Q ss_pred chhhHHHHHHHHHHHhccCCCCCcccchhhhhhhhccccCCCCCCCCChhHHHHHHhccCCCCCCCCCCCCCchhhHhhh
Q 003417 96 ASNEIKERVHAIKSMLGSMEDGEISVSAYDTAWVALVEDIQGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSAHDRLINT 175 (821)
Q Consensus 96 ~~~~~~~~~~~i~~~~~~~~~g~~S~S~YDTAWVAmvp~~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~T 175 (821)
.++++++++++||+||.+|++|++|||+||||||||||+++|+++||||+||+|||+||++|||||++..++.+|||+||
T Consensus 29 ~~~~~~~~~~~i~~~~~~~~~g~~S~S~YDTAWVamvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~T 108 (785)
T 3s9v_A 29 DEKRIETLISEIKNMFRCMGYGETNPSAYDTAWVARIPAVDGSDNPHFPETVEWILQNQLKDGSWGEGFYFLAYDRILAT 108 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCCCCCCHHHHHHHTTSBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhcCCCCcccCcHHHhhHHhccccCCCCCCCCchHHHHHHHHccCCCCCCCCCCCCchHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999988778899999999
Q ss_pred HHHHHHHHhhccCchhhhhHHHHHHHhHhhhhccCCCCCCc-eEeEehhHHHHHHHhCCCCCCCCChhhHHHHHHhhhhh
Q 003417 176 LACVVALRSWNIHHDKCHKGLLFFKENISKLENENDEHMPI-GFEVAFPSLLEIARSLDIEVPYDSPVLQKIYDKRNLKL 254 (821)
Q Consensus 176 LA~vlAL~~w~~~~~~i~~Gl~fl~~nl~~~~~~~~~~~~v-gfeii~P~Ll~~a~~lgl~~p~~~~~l~~l~~~r~~kL 254 (821)
||||+||++||+++++|+||++||++|+++|.++ ..++|| |||||||+||++|+++||+||++++.++.|.++|+.||
T Consensus 109 lAcvlAL~~w~~~~~~i~~Gl~fl~~nl~~~~~~-~~~~~i~gfeiifP~ll~~a~~~gl~~~~~~~~~~~l~~~r~~kL 187 (785)
T 3s9v_A 109 LACIITLTLWRTGETQVQKGIEFFRTQAGKMEDE-ADSHRPSGFEIVFPAMLKEAKILGLDLPYDLPFLKQIIEKREAKL 187 (785)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHTTGGGS-TTSCCCTTHHHHHHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHHHHhhcc-CcCCCccceeeeHHHHHHHHHHcCCCCCCCchhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999766 478887 99999999999999999999999999999999999999
Q ss_pred cCCCCccccccchhHHHHHhcCCC-cchHHHhhcccCCCcccCCccHHHHHHhccCchhHHHHHHHHHHHhcCCCCCCCc
Q 003417 255 TRIPKDIMHNVPTTLLHSLEGMPD-LNWQKLLKLQCQDGSFLFSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVPNVYP 333 (821)
Q Consensus 255 ~r~~~~~~~~~p~~llhslEgl~~-~d~~~v~~~~~~~GS~~~SPSaTAa~l~~~~d~~~l~YL~~~v~~~~g~VP~~yP 333 (821)
+|++.+.+|+.|++|+||||||++ +||++|+++|++|||||+|||||||||||++|++|++||++++++++||||++||
T Consensus 188 ~~~~~~~~~~~p~~llhslE~l~~~~d~~~v~~~q~~~GS~~~SPsaTAa~l~~~~d~~~~~YL~~~~~~~~g~VP~~yP 267 (785)
T 3s9v_A 188 KRIPTDVLYALPTTLLYSLEGLQEIVDWQKIMKLQSKDGSFLSSPASTAAVFMRTGNKKCLDFLNFVLKKFGNHVPCHYP 267 (785)
T ss_dssp TTSCHHHHHHSCCGGGGGGGGCTTTCCHHHHHTTCCTTSCBTTBHHHHHHHHHHHCCHHHHHHHHHHHHHHSSCCCSSCC
T ss_pred hCCChhhccCCcchHHHHHHhccccccHHHHHhccCCCCCcccCHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCCcCC
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhccccccccCCCCCChHHHHHHHHHHHHcCCccchhhhhccc-
Q 003417 334 VDIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYDVSAEAFEHFE- 412 (821)
Q Consensus 334 ~d~fe~Lw~VD~LqRLGIs~~F~~EI~~~Ld~i~~~~~~~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~VS~dvf~~F~- 412 (821)
+|+||+||+||+||||||+|||++||+++|+++|++|.++|++++++....|+|+||++||+||||||+||||||++|+
T Consensus 268 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d 347 (785)
T 3s9v_A 268 LDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRD 347 (785)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBC
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 9999999999999999999999999999999999999988888876555689999999999999999999999999999
Q ss_pred cCCceeeccCCccchHHHHHhHHhhhccCCCChhHHHHHHHHHHHHHHHHhhc-cchhhhhhcCCChhHHHHhccCcccc
Q 003417 413 KGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSAKYLKAKTAA-DLLDKWIIAKDLPGEVAFAMEVPWYA 491 (821)
Q Consensus 413 ~~g~F~~~~~e~~~dvs~~l~Ly~AS~l~~~gE~iL~eA~~fs~~~L~~~~~~-~~~Dkw~~s~~l~~eV~~aL~~P~~~ 491 (821)
++|+|+|+.+++.+|++|||+||||||+++|||+|||+|+.||++||++.+.. ...|||+++++|++||+|||++|||+
T Consensus 348 ~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~~ 427 (785)
T 3s9v_A 348 ENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHK 427 (785)
T ss_dssp TTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGGG
T ss_pred cCCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCcccc
Confidence 89999999999999999999999999999999999999999999999997765 67899999999999999999999999
Q ss_pred ccchhHHHHHHHHhcCCCcchhhhhhccCCCCCCHHHHHHHHhhhhhhhhchhhhHHHHHHHHHhcCCCcCCcchhhHHH
Q 003417 492 CLPRLETRLYIEQYGGEDDVWIGKTLYRMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKLDKFGITRRALLL 571 (821)
Q Consensus 492 ~l~RleaR~yIe~Y~~~~~~wi~Kt~Yrm~~v~n~~lLeLAklDFn~~Qs~hq~El~~l~rWw~e~~l~~l~faR~r~ve 571 (821)
+|||||||+||++|+ .++.|||||+||||+++|++||||||+|||+||++||+||++|+||||++||.+|||+|||++|
T Consensus 428 ~l~RleaR~yI~~Y~-~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~l~faRdr~ve 506 (785)
T 3s9v_A 428 SMPRLEARSYIENYG-PDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFTDLNFTRERVTE 506 (785)
T ss_dssp CCHHHHHHHHHHHCC-TTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCSSSCCCHHH
T ss_pred CchHHHHHHHHHHhc-ccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCcCccHHHHHHH
Confidence 999999999999999 5778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCcchhHHHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHHHHhhhhhhhhhhcccCCCchhhHhHHHHH
Q 003417 572 AYFVASASIYEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWDYINRRRWDSNKKGERFAGKT 651 (821)
Q Consensus 572 ~Yf~aaa~~fEPe~s~~Ri~~aK~~~L~tviDD~fD~ygts~eEl~~f~~~f~~~~~~wD~~~~~~lp~~~~~k~~f~~a 651 (821)
||||++|++||||||.+|++|||+++|+|+|||+||+||| +|||++||++|+ |||..++++||+| ||+|| .+
T Consensus 507 ~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT-~eEl~~ft~ai~----RWD~~~~~~Lpey--mk~~f-~a 578 (785)
T 3s9v_A 507 IYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGS-LDDLKLFTESVK----RWDLSLVDQMPQQ--MKICF-VG 578 (785)
T ss_dssp HHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCC-HHHHHHHHHHHH----HTSSSSGGGSCHH--HHHHH-HH
T ss_pred HHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCC-HHHHHHHHHHHH----HcCchhhhcCChh--HHHHH-HH
Confidence 9999999999999999999999999999999999999998 999999998555 6888888999998 99999 99
Q ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH------HHhhCCCccc------------chHHHHHHHHHhccCcccc
Q 003417 652 LLGTLNHIALDALVANGRDIGGNLREAWEKWLT------TWQDDGNSHW------------GVAELLVQTINLSAGRLLS 713 (821)
Q Consensus 652 L~~t~nei~~~~~~~~g~~i~~~L~~~W~~l~~------~W~~eg~~~~------------~~~~llv~~~~l~~G~~l~ 713 (821)
|++|+|||++++.+.||+++++|++++|+++++ +|+++||+|+ |...+++++++++ |+.++
T Consensus 579 L~~~~nei~~~~~~~~g~~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~-G~~lt 657 (785)
T 3s9v_A 579 FYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFT-GEVLT 657 (785)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCS-SSCCC
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHc-CCCCC
Confidence 999999999999999999999999999999997 6999999986 4445667777665 78888
Q ss_pred hhhcC----ChhHHHHHHHHHHHhhhhhhhHHHHhhcccc-----ccccch--------hhhhhcHHHHHHHHHHHHHhc
Q 003417 714 EELLC----HPEYARLSYLTNRICHTLGHYHKQKVQVNRN-----NNIGNN--------RITALSVEPDMQELVQLVLQN 776 (821)
Q Consensus 714 eel~~----~p~~~~l~~li~Rl~~DL~t~~~Ek~~G~~~-----YmkE~~--------~~i~~~iE~~~rEL~qlvl~~ 776 (821)
++++. +|++.++++.|+||+|||++|++|+++|+++ ||+|++ .+++++|++.||+|++++++
T Consensus 658 ~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~- 736 (785)
T 3s9v_A 658 DEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVN- 736 (785)
T ss_dssp HHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhcccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 88543 4789999999999999999999999999986 999983 26788999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHH--Hhh---ccCChHH--HHHHHhhccccccC
Q 003417 777 SSSGIGSDVKQTFLTVAKSF--YYC---AYCDAET--INSHIGKVLFQTVD 820 (821)
Q Consensus 777 ~~~~vp~~~Kq~flnvaR~f--yY~---a~~~~~~--ik~hI~kVLfEPI~ 820 (821)
++ +|++||++|+|+||++ .|. +|+.|++ |++||++||++||.
T Consensus 737 -~~-~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 737 -NK-IPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp -SC-CCHHHHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred -CC-CCHHHHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 35 9999999999999984 343 5888754 99999999999983
No 3
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=1e-196 Score=1745.97 Aligned_cols=713 Identities=35% Similarity=0.639 Sum_probs=662.8
Q ss_pred hhhHHHHHHHHHHHhc-cCCCC---CcccchhhhhhhhccccCCCCCCCCChhHHHHHHhccCCCCCCCCCCCCCchhhH
Q 003417 97 SNEIKERVHAIKSMLG-SMEDG---EISVSAYDTAWVALVEDIQGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSAHDRL 172 (821)
Q Consensus 97 ~~~~~~~~~~i~~~~~-~~~~g---~~S~S~YDTAWVAmvp~~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~l 172 (821)
.+++++++++||+||. +|++| ++|||+||||||||||+++|+++||||+||+|||+||++|||||++++++.+|||
T Consensus 53 ~~~~~~Lie~VK~~l~~~~~~g~~g~~S~S~YDTAWVAmvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l 132 (817)
T 3sdr_A 53 RERAEVLVSEIKAMLNPAITGDGESMITPSAYDTAWVARVPAIDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLLSDRL 132 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCCCCCCCHHHHHHHHTCBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCCCcccccCHHHhhHHheeecCCCCCCCCchHHHHHHHHccCCCCCCCCCCCcchHHHH
Confidence 5678999999999999 89887 9999999999999999999999999999999999999999999998778899999
Q ss_pred hhhHHHHHHHHhhccCchhhhhHHHHHHHhHhhhhcc-CCCCCCceEeEehhHHHHHHHhCCCCCCCCChhhHHHHHHhh
Q 003417 173 INTLACVVALRSWNIHHDKCHKGLLFFKENISKLENE-NDEHMPIGFEVAFPSLLEIARSLDIEVPYDSPVLQKIYDKRN 251 (821)
Q Consensus 173 l~TLA~vlAL~~w~~~~~~i~~Gl~fl~~nl~~~~~~-~~~~~~vgfeii~P~Ll~~a~~lgl~~p~~~~~l~~l~~~r~ 251 (821)
+||||||+||++|++++++|+||++||++|+++|.++ +.+++|||||||||+||++|+++||+||++++.++.|.++|+
T Consensus 133 l~TlAcvlAL~~w~~~~~~i~~Gl~fl~~nl~~~~~~~~~~~~~vgfeiifP~ll~~a~~~gl~~p~~~~~~~~l~~~r~ 212 (817)
T 3sdr_A 133 LATLSCVLVLLKWNVGDLQVEQGIEFIKSNLELVKDETDQDSLVTDFEIIFPSLLREAQSLRLGLPYDLPYIHLLQTKRQ 212 (817)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCSGGGSCSCCTTHHHHHHHHHHHHHHTTCSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhcccccCCCCcceeeeHHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999764 357999999999999999999999999999999999999999
Q ss_pred hhhcCCCCccccccchhHHHHHhcCCC-cchHHHhhcccCCCcccCCccHHHHHHhccCchhHHHHHHHHHHHhcCCCCC
Q 003417 252 LKLTRIPKDIMHNVPTTLLHSLEGMPD-LNWQKLLKLQCQDGSFLFSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVPN 330 (821)
Q Consensus 252 ~kL~r~~~~~~~~~p~~llhslEgl~~-~d~~~v~~~~~~~GS~~~SPSaTAa~l~~~~d~~~l~YL~~~v~~~~g~VP~ 330 (821)
.||+|++.+.+|+.|++|+||||||++ +||++|+++|++|||||+|||||||||||++|++|++||++++++++||||+
T Consensus 213 ~kL~~~~~~~~~~~p~~llhslE~l~~~~d~~~~~~~q~~~GS~~~SPsaTAa~l~~~~d~~~~~YL~~~~~~~~g~VP~ 292 (817)
T 3sdr_A 213 ERLAKLSREEIYAVPSPLLYSLEGIQDIVEWERIMEVQSQDGSFLSSPASTACVFMHTGDAKCLEFLNSVMIKFGNFVPC 292 (817)
T ss_dssp HHHHTCCSGGGGTSCCGGGGGGGGCTTTCCTTTGGGGCCTTSCBTTBHHHHHHHHHHHCCHHHHHHHHHHHHHHSSCCCS
T ss_pred HHHhCCChhhccCCCchHHHHHHhccccccHHHHHhccCCCCCcccCHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCccChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhccccccccCCCCCChHHHHHHHHHHHHcCCccchhhhhc
Q 003417 331 VYPVDIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYDVSAEAFEH 410 (821)
Q Consensus 331 ~yP~d~fe~Lw~VD~LqRLGIs~~F~~EI~~~Ld~i~~~~~~~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~VS~dvf~~ 410 (821)
+||+|+||+||+||+||||||+|||++||+++|+++|++|.++|++++++....|+|+|||+||+||||||+||||||++
T Consensus 293 ~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~ 372 (817)
T 3sdr_A 293 LYPVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDN 372 (817)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGG
T ss_pred cCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHH
Confidence 99999999999999999999999999999999999999999888887755556899999999999999999999999999
Q ss_pred cc-cCCceeeccCCccchHHHHHhHHhhhccCCCChhHHHHHHHHHHHHHHHHhhc-cchhhhhhcCCChhHHHHhccCc
Q 003417 411 FE-KGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSAKYLKAKTAA-DLLDKWIIAKDLPGEVAFAMEVP 488 (821)
Q Consensus 411 F~-~~g~F~~~~~e~~~dvs~~l~Ly~AS~l~~~gE~iL~eA~~fs~~~L~~~~~~-~~~Dkw~~s~~l~~eV~~aL~~P 488 (821)
|+ ++|+|+|+.+++.+|++|||+||||||+++|||+|||+|+.||++||++.+.. ...|||+++++|++||+|||++|
T Consensus 373 F~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P 452 (817)
T 3sdr_A 373 FKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTS 452 (817)
T ss_dssp GBCC--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCC
T ss_pred HhhcCCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCc
Confidence 99 88999999999999999999999999999999999999999999999997765 67799999999999999999999
Q ss_pred cccccchhHHHHHHHHhcCCCcchhhhhhccCCCCCCHHHHHHHHhhhhhhhhchhhhHHHHHHHHHhcCCCcCCcchhh
Q 003417 489 WYACLPRLETRLYIEQYGGEDDVWIGKTLYRMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKLDKFGITRRA 568 (821)
Q Consensus 489 ~~~~l~RleaR~yIe~Y~~~~~~wi~Kt~Yrm~~v~n~~lLeLAklDFn~~Qs~hq~El~~l~rWw~e~~l~~l~faR~r 568 (821)
||+++||||||+||++|++ ++.|||||+||||+++|++||||||+|||+||++||+||++|+||||++||++|||+|||
T Consensus 453 ~~~~l~Rlear~yI~~Y~~-~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~l~faRdr 531 (817)
T 3sdr_A 453 WHASVPRVEAKRYCQVYRP-DYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPLFTFARER 531 (817)
T ss_dssp STTCCHHHHHHHHHTTCCT-TCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGCTTSCCC
T ss_pred hhccChHHHHHHHHHHhCc-cchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCCCcCccHHHH
Confidence 9999999999999999995 678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHHHHhhhhhhhhhhcccCCCchhhHhHH
Q 003417 569 LLLAYFVASASIYEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWDYINRRRWDSNKKGERFA 648 (821)
Q Consensus 569 ~ve~Yf~aaa~~fEPe~s~~Ri~~aK~~~L~tviDD~fD~ygts~eEl~~f~~~f~~~~~~wD~~~~~~lp~~~~~k~~f 648 (821)
++|||||++|++||||||.+|++|||+++|+|+|||+||+||| +|||++||++|+ |||..++++||+| ||+||
T Consensus 532 ~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT-~eEl~~ft~ai~----RWD~~~~~~LPey--mk~~~ 604 (817)
T 3sdr_A 532 PLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGT-LDELKLFTEAVR----RWDLSFTENLPDY--MKLCY 604 (817)
T ss_dssp HHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHH----HTCGGGGGGSCHH--HHHHH
T ss_pred HHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCC-HHHHHHHHHHHH----HcCchhhhcCchH--HHHHH
Confidence 9999999999999999999999999999999999999999998 999999988554 7888889999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH------HHhhCCCccc------------chHH-HHHHHHHhccC
Q 003417 649 GKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLT------TWQDDGNSHW------------GVAE-LLVQTINLSAG 709 (821)
Q Consensus 649 ~~aL~~t~nei~~~~~~~~g~~i~~~L~~~W~~l~~------~W~~eg~~~~------------~~~~-llv~~~~l~~G 709 (821)
.+|++|+|||++++.+.||+++++|++++|+++++ +|+++||+|+ |... ++++++++ +|
T Consensus 605 -~aL~~~~~e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~-~g 682 (817)
T 3sdr_A 605 -QIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIM-DG 682 (817)
T ss_dssp -HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTC-TT
T ss_pred -HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHH-cC
Confidence 99999999999999999999999999999999997 6999999986 4444 44555555 47
Q ss_pred cccchhhc------CChhHHHHHHHHHHHhhhhhhhHHHHhhcccc-----ccccch--------hhhhhcHHHHHHHHH
Q 003417 710 RLLSEELL------CHPEYARLSYLTNRICHTLGHYHKQKVQVNRN-----NNIGNN--------RITALSVEPDMQELV 770 (821)
Q Consensus 710 ~~l~eel~------~~p~~~~l~~li~Rl~~DL~t~~~Ek~~G~~~-----YmkE~~--------~~i~~~iE~~~rEL~ 770 (821)
+.++++++ ++|++.++++.|+||+|||++|++|+++|+++ ||+|++ .+++++|++.||+|+
T Consensus 683 ~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln 762 (817)
T 3sdr_A 683 QLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELT 762 (817)
T ss_dssp CCCCHHHHHTTCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHhcccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888743 34589999999999999999999999999986 999984 267789999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHH--hh---ccCCh-HHHHHHHhhccccccCC
Q 003417 771 QLVLQNSSSGIGSDVKQTFLTVAKSFY--YC---AYCDA-ETINSHIGKVLFQTVDI 821 (821)
Q Consensus 771 qlvl~~~~~~vp~~~Kq~flnvaR~fy--Y~---a~~~~-~~ik~hI~kVLfEPI~i 821 (821)
++++++ +.+|++||++|+|+||+++ |+ +|+.+ .+|++||++||++||++
T Consensus 763 ~e~l~~--~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 763 REFLKP--DDVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp HHHHSC--CSSCHHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHhCC--CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 999973 5899999999999999863 54 58876 46999999999999986
No 4
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=1.9e-195 Score=1724.92 Aligned_cols=706 Identities=34% Similarity=0.641 Sum_probs=659.7
Q ss_pred chhhHHHHHHHHHHHhccCCCCCcccchhhhhhhhccccC--CCCCCCCChhHHHHHHhccCCCCCCCCCCCCCchhhHh
Q 003417 96 ASNEIKERVHAIKSMLGSMEDGEISVSAYDTAWVALVEDI--QGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSAHDRLI 173 (821)
Q Consensus 96 ~~~~~~~~~~~i~~~~~~~~~g~~S~S~YDTAWVAmvp~~--~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll 173 (821)
.++++++++++||+||.+|++|++|||+||||||||||++ +|+++|+||+||+|||+||++|||||++++++.+|||+
T Consensus 6 ~~~~~~~~~~~i~~~~~~~~~g~~S~S~YDTAWVamvp~~~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll 85 (764)
T 3p5p_A 6 YQERADELVVKIKDMFNALGDGDISPSAYDTAWVARLATISSDGSEKPRFPQALNWVFNNQLQDGSWGIESHFSLCDRLL 85 (764)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCCCCCHHHHHHHHHCEEECTTSCEEESCHHHHHHHHHCCCTTSCCSCTTSCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhcCCCCcccCcHHHHHHHHhCccccCCCCCCCCChHHHHHHHHccCCCCCCCCCCCcchHHHHH
Confidence 3677899999999999999999999999999999999999 99999999999999999999999999987789999999
Q ss_pred hhHHHHHHHHhhccCchhhhhHHHHHHHhHhhhhccCCCCCCceEeEehhHHHHHHHhCCCCCCCCChhhHHHHHHhhhh
Q 003417 174 NTLACVVALRSWNIHHDKCHKGLLFFKENISKLENENDEHMPIGFEVAFPSLLEIARSLDIEVPYDSPVLQKIYDKRNLK 253 (821)
Q Consensus 174 ~TLA~vlAL~~w~~~~~~i~~Gl~fl~~nl~~~~~~~~~~~~vgfeii~P~Ll~~a~~lgl~~p~~~~~l~~l~~~r~~k 253 (821)
||||||+||++||+++++|+||++||++|+ ++.++ .+++|||||||||+||++|+++||+||+++|.++.|.++|+.|
T Consensus 86 ~TlAcvlAL~~w~~~~~~i~~Gl~fl~~nl-~~~~~-~~~~~vgfeiifP~ll~~a~~~gl~~p~~~~~~~~l~~~r~~k 163 (764)
T 3p5p_A 86 NTTNSVIALSVWKTGHSQVQQGAEFIAENL-RLLNE-EDELSPDFQIIFPALLQKAKALGINLPYDLPFIKYLSTTREAR 163 (764)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-TTCCT-TSCCCTTHHHHHHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHH-HhhcC-CCCCCceeeeeHHHHHHHHHHcCCCCCCCchhHHHHHHhHHHH
Confidence 999999999999999999999999999999 65444 5899999999999999999999999999999999999999999
Q ss_pred hcCCCCccccccchhHHHHHhcCCC-cchHHHhhcccCCCcccCCccHHHHHHhccCchhHHHHHHHHHHHhcCCCCCCC
Q 003417 254 LTRIPKDIMHNVPTTLLHSLEGMPD-LNWQKLLKLQCQDGSFLFSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVPNVY 332 (821)
Q Consensus 254 L~r~~~~~~~~~p~~llhslEgl~~-~d~~~v~~~~~~~GS~~~SPSaTAa~l~~~~d~~~l~YL~~~v~~~~g~VP~~y 332 (821)
|+|++.+. |+.|++|+||||||++ +||++|+++|++|||||+||||||||||+++|++|++||++++++++||||++|
T Consensus 164 L~~~~~~~-~~~p~~llhslE~~~~~~d~~~~~~~~~~~GS~~~SPsaTAa~l~~~~d~~~~~YL~~~~~~~~g~VP~~y 242 (764)
T 3p5p_A 164 LTDVSAAA-DNIPANMLNALEGLEEVIDWNKIMRFQSKDGSFLSSPASTACVLMNTGDEKCFTFLNNLLDKFGGCVPCMY 242 (764)
T ss_dssp HHHHHTST-TSSCGGGGGGGGGSGGGCCTTGGGGGBCTTSCBTTBHHHHHHHHHHHCCHHHHHHHHHHHHHHTSCCCSSC
T ss_pred HhcCchhh-cCCCchHHHHHHhccccccHHHHHhccCCCCCcccChHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCCcC
Confidence 99999999 9999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhccccccccCCCCCChHHHHHHHHHHHHcCCccchhhhhccc
Q 003417 333 PVDIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYDVSAEAFEHFE 412 (821)
Q Consensus 333 P~d~fe~Lw~VD~LqRLGIs~~F~~EI~~~Ld~i~~~~~~~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~VS~dvf~~F~ 412 (821)
|+|+||+||+||+||||||+|||++||+++|+++|++|.++|++++++....|+|+||++||+||||||+||||||++|+
T Consensus 243 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 322 (764)
T 3p5p_A 243 SIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFK 322 (764)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhh
Confidence 99999999999999999999999999999999999999988888775555689999999999999999999999999999
Q ss_pred -cCCceeeccCCccchHHHHHhHHhhhccCCCChhHHHHHHHHHHHHHHHHhhccchhhhhhcCCChhHHHHhccCcccc
Q 003417 413 -KGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSAKYLKAKTAADLLDKWIIAKDLPGEVAFAMEVPWYA 491 (821)
Q Consensus 413 -~~g~F~~~~~e~~~dvs~~l~Ly~AS~l~~~gE~iL~eA~~fs~~~L~~~~~~~~~Dkw~~s~~l~~eV~~aL~~P~~~ 491 (821)
++|+|+|+.+++.+|++|||+||||||+++|||+|||+|+.||++||++.+. .+|+++++|++||+|||++|||+
T Consensus 323 d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~----~~~~~~~~L~~eV~~aL~~P~~~ 398 (764)
T 3p5p_A 323 DENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALA----TKISTNTKLFKEIEYVVEYPWHM 398 (764)
T ss_dssp CTTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHH----HTSCSSSHHHHHHHHHHHSCGGG
T ss_pred cCCCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHh----ccCCCCccHHHHHHHHhcCchhc
Confidence 8999999999999999999999999999999999999999999999998653 25777888999999999999999
Q ss_pred ccchhHHHHHHHHhcCCCcchhhhhhccCCCCCCHHHHHHHHhhhhhhhhchhhhHHHHHHHHHhcCCCcCCcchhhHHH
Q 003417 492 CLPRLETRLYIEQYGGEDDVWIGKTLYRMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKLDKFGITRRALLL 571 (821)
Q Consensus 492 ~l~RleaR~yIe~Y~~~~~~wi~Kt~Yrm~~v~n~~lLeLAklDFn~~Qs~hq~El~~l~rWw~e~~l~~l~faR~r~ve 571 (821)
+|||||||+||++|++ ++.|||||+||||+++|++||||||+|||+||++||+||++|+||||++||++|||+|||++|
T Consensus 399 ~l~Rlear~yI~~Y~~-~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l~~l~faRdr~ve 477 (764)
T 3p5p_A 399 SIPRLEARSYIDSYDD-NYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMADINFTRHRVAE 477 (764)
T ss_dssp CCHHHHHHHHHHHCCT-TCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTTCCHHHHHH
T ss_pred cchHHHHHHHHHHhcc-cchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCCCcCccHHHHHHH
Confidence 9999999999999995 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCcchhHHHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHHHHhhhhhhhhhhcccCCCchhhHhHHHHH
Q 003417 572 AYFVASASIYEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWDYINRRRWDSNKKGERFAGKT 651 (821)
Q Consensus 572 ~Yf~aaa~~fEPe~s~~Ri~~aK~~~L~tviDD~fD~ygts~eEl~~f~~~f~~~~~~wD~~~~~~lp~~~~~k~~f~~a 651 (821)
||||++| ||||||.+|++|||+++|+|+|||+||+||| +|||++||++|+ |||..++++||+| ||+|| .+
T Consensus 478 ~Yfw~~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT-~eEl~~ft~ai~----RWD~~~~~~LPey--mk~~f-~a 547 (764)
T 3p5p_A 478 VYFSSAT--FEPEYSATRIAFTKIGCLQVLFDDMADIFAT-LDELKSFTEGVK----RWDTSLLHEIPEC--MQTCF-KV 547 (764)
T ss_dssp HHHHTCC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCC-HHHHHHHHHHHH----HTSSTTGGGSCHH--HHHHH-HH
T ss_pred HHHHHHh--CCccchHHHHHHHHHHHHHHHHHHHcccCCC-HHHHHHHHHHHH----HcCchhhhcCchH--HHHHH-HH
Confidence 9999999 9999999999999999999999999999998 999999998555 6888889999998 99999 99
Q ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH------HHhhCCCccc------------chHHHHHHHHHhccCcccc
Q 003417 652 LLGTLNHIALDALVANGRDIGGNLREAWEKWLT------TWQDDGNSHW------------GVAELLVQTINLSAGRLLS 713 (821)
Q Consensus 652 L~~t~nei~~~~~~~~g~~i~~~L~~~W~~l~~------~W~~eg~~~~------------~~~~llv~~~~l~~G~~l~ 713 (821)
|++|+|||++++.+.||+++++|++++|+++++ +|+++||+|+ |...+++++++++ |+.++
T Consensus 548 L~~~~~ei~~~~~~~~g~~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~-G~~lt 626 (764)
T 3p5p_A 548 WFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLM-GELVK 626 (764)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTS-SSCCC
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHc-CCCCc
Confidence 999999999999999999999999999999997 6999999986 4455677777776 78888
Q ss_pred hhh----cCChhHHHHHHHHHHHhhhhhhhHHHHhhcccc-----ccccch--------hhhhhcHHHHHHHHHHHHHhc
Q 003417 714 EEL----LCHPEYARLSYLTNRICHTLGHYHKQKVQVNRN-----NNIGNN--------RITALSVEPDMQELVQLVLQN 776 (821)
Q Consensus 714 eel----~~~p~~~~l~~li~Rl~~DL~t~~~Ek~~G~~~-----YmkE~~--------~~i~~~iE~~~rEL~qlvl~~ 776 (821)
+++ ..+|++.++++.|+||+|||++|++|+++|+++ ||+|++ .+++++|++.||+|++++++.
T Consensus 627 ~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~ 706 (764)
T 3p5p_A 627 DDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKP 706 (764)
T ss_dssp GGGHHHHSTTSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 885 344899999999999999999999999999986 999984 267889999999999999962
Q ss_pred CCCCCCHHHHHHHHHHHHHH--Hhh---ccCChH-HHHHHHhhccccccCC
Q 003417 777 SSSGIGSDVKQTFLTVAKSF--YYC---AYCDAE-TINSHIGKVLFQTVDI 821 (821)
Q Consensus 777 ~~~~vp~~~Kq~flnvaR~f--yY~---a~~~~~-~ik~hI~kVLfEPI~i 821 (821)
++.+|++||++|+|+||++ .|+ +|+.++ +|+++|+++|++||++
T Consensus 707 -~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 707 -SNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp -CSSSCHHHHHHHHHTHHHHHHHSCC-------CCCHHHHHHHHHTCCCCC
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCcc
Confidence 4589999999999999985 343 677765 4999999999999985
No 5
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=8e-115 Score=1001.09 Aligned_cols=485 Identities=24% Similarity=0.322 Sum_probs=431.1
Q ss_pred CcccCCccHHHHHHhccC-----c---hhHHHHHHHHHHHhcCCCCCCCcc-ChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 003417 292 GSFLFSPSSTAYALMQTK-----D---ENCLKYLTKAVQRFNGGVPNVYPV-DIFEHLWAVDRLQRLGISRYFQPEIKEC 362 (821)
Q Consensus 292 GS~~~SPSaTAa~l~~~~-----d---~~~l~YL~~~v~~~~g~VP~~yP~-d~fe~Lw~VD~LqRLGIs~~F~~EI~~~ 362 (821)
.|..+.||.|...|++.. . .+-.+-|+..|+++.... . +++++||+||+||||||+|||++||+++
T Consensus 16 ~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~-----~~~~~~~L~lID~lqRLGi~~hF~~EI~~~ 90 (555)
T 3n0f_A 16 RSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNE-----KAEFLTLLELIDNVQRLGLGYRFESDIRRA 90 (555)
T ss_dssp -CCCCCCCTTCHHHHTCC-----CHHHHHHHHHHHHHHHHHHHCT-----TSCHHHHHHHHHHHHHTTCGGGSHHHHHHH
T ss_pred CCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhc-----ccCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence 457789999999888742 1 134567899999886432 3 7899999999999999999999999999
Q ss_pred HHHHHhhhhccccccccCCCCCChHHHHHHHHHHHHcCCccchhhhhccc-cCCceeeccCCccchHHHHHhHHhhhccC
Q 003417 363 LDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYDVSAEAFEHFE-KGGEFFCFVGQSTQAVTGVYNLYRASQVL 441 (821)
Q Consensus 363 Ld~i~~~~~~~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~VS~dvf~~F~-~~g~F~~~~~e~~~dvs~~l~Ly~AS~l~ 441 (821)
|+++|+. ..+++|. ..|+++|||+|||||||||+||||||++|+ ++|.|+ ++...|++|||+||||||++
T Consensus 91 L~~i~~~--~~~~~~~----~~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G~F~---~~l~~dv~glL~LYeAs~l~ 161 (555)
T 3n0f_A 91 LDRFVSS--GGFDGVT----KTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFL---ENLKEDTKAILSLYEASFLA 161 (555)
T ss_dssp HHHHHHT--CHHHHHT----TTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBC---GGGGGCHHHHHHHHHHHTTC
T ss_pred HHHHHhh--ccccccc----cCCHHHHHHHHHHHHhcCCCcChHHHhcccccCccch---hhhhhhhHHHHHHHHHHhcc
Confidence 9999984 2233332 159999999999999999999999999999 788995 45689999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhccchhhhhhcCCChhHHHHhccCccccccchhHHHHHHHHhcCCCcchhhhhhccCC
Q 003417 442 FPGEKILGHAKQFSAKYLKAKTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGKTLYRMP 521 (821)
Q Consensus 442 ~~gE~iL~eA~~fs~~~L~~~~~~~~~Dkw~~s~~l~~eV~~aL~~P~~~~l~RleaR~yIe~Y~~~~~~wi~Kt~Yrm~ 521 (821)
+|||+||++|+.||+++|++.+.. +++++|++||+|||++|||+++||||||+||++|+++++
T Consensus 162 ~~gE~iLdeA~~Fs~~~L~~~~~~------~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~----------- 224 (555)
T 3n0f_A 162 LEGENILDEARVFAISHLKELSEE------KIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKED----------- 224 (555)
T ss_dssp CTTCHHHHHHHHHHHHHHHTCCHH------HHCHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTCTT-----------
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhc------cCCchHHHHHHHHhcCCcccCchHHHHHHHHHHhccccc-----------
Confidence 999999999999999999975432 235679999999999999999999999999999997766
Q ss_pred CCCCHHHHHHHHhhhhhhhhchhhhHHHHHHHHHhcCC-CcCCcchhhHHHHHHHHhhcccCCcchhHHHHHHHHHHHHH
Q 003417 522 YVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKL-DKFGITRRALLLAYFVASASIYEPARWQERIAWAKTAVLVE 600 (821)
Q Consensus 522 ~v~n~~lLeLAklDFn~~Qs~hq~El~~l~rWw~e~~l-~~l~faR~r~ve~Yf~aaa~~fEPe~s~~Ri~~aK~~~L~t 600 (821)
+|++||||||+|||+||++||+||++|+||||++|| .+|||+|||++|||||++|++||||||.+|++|||+++|+|
T Consensus 225 --~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~t 302 (555)
T 3n0f_A 225 --ANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVT 302 (555)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999 68999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCcHHHHHHHHHHHHhhhhhhhhhhcccCCCchhhHhHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Q 003417 601 TITSYFDKQKDSCKQRRAFVREFRNCISAWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWE 680 (821)
Q Consensus 601 viDD~fD~ygts~eEl~~f~~~f~~~~~~wD~~~~~~lp~~~~~k~~f~~aL~~t~nei~~~~~~~~g~~i~~~L~~~W~ 680 (821)
+|||+||+||| +|||++||++ ++|||..++++||+| ||+|| .+|++|+|||+.++.+.||+++++|++++|+
T Consensus 303 viDD~yD~ygt-~eEl~~ft~a----i~RWD~~~~~~LPey--mk~~~-~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~ 374 (555)
T 3n0f_A 303 IIDDIYDVYGT-LDELELFTDA----VERWDVNAINDLPDY--MKLCF-LALYNTINEIAYDNLKDKGENILPYLTKAWA 374 (555)
T ss_dssp HHHHHHHTTCC-HHHHHHHHHH----HHHTCGGGGGGSCHH--HHHHH-HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhccccCC-HHHHHHHHHH----HHhcCccccccCcHH--HHHHH-HHHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 99999999998 9999999875 557888889999999 99999 9999999999999999999999999999999
Q ss_pred HHHH------HHhhCCCccc------------chHHHHHHHHHhccCcccchh----hcCChhHHHHHHHHHHHhhhhhh
Q 003417 681 KWLT------TWQDDGNSHW------------GVAELLVQTINLSAGRLLSEE----LLCHPEYARLSYLTNRICHTLGH 738 (821)
Q Consensus 681 ~l~~------~W~~eg~~~~------------~~~~llv~~~~l~~G~~l~ee----l~~~p~~~~l~~li~Rl~~DL~t 738 (821)
++++ +|+++||+|+ |.+.+++++++++ |..++++ +.++|++.++++.|+||+|||++
T Consensus 375 ~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~m-g~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S 453 (555)
T 3n0f_A 375 DLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAV-VQNIKKEEIENLQKYHDIISRPSHIFRLCNDLAS 453 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHH-CSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhc-CCCCCHHHHHhcccchHHHHHHHHHHHHhccchh
Confidence 9998 7999999986 5555667775554 7888887 46789999999999999999999
Q ss_pred hHHHHhhcccc-----ccccch-------hhhhhcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH--Hhh---cc
Q 003417 739 YHKQKVQVNRN-----NNIGNN-------RITALSVEPDMQELVQLVLQNSSSGIGSDVKQTFLTVAKSF--YYC---AY 801 (821)
Q Consensus 739 ~~~Ek~~G~~~-----YmkE~~-------~~i~~~iE~~~rEL~qlvl~~~~~~vp~~~Kq~flnvaR~f--yY~---a~ 801 (821)
|++|+++|+++ ||+|++ .+++++|++.||+|+++++++ +.+|++|++.++|+||++ .|. +|
T Consensus 454 ~~~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~--~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~ 531 (555)
T 3n0f_A 454 ASAEIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNKEKLGG--SLFAKPFVETAINLARQSHCTYHNGDAH 531 (555)
T ss_dssp HHHHHTTTCCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHSC--CSSCHHHHHHHHHHHHHHHHHSCCC---
T ss_pred hhhhhhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999996 999885 367889999999999999974 589999999999999985 343 68
Q ss_pred CChH-HHHHHHhhccccccC
Q 003417 802 CDAE-TINSHIGKVLFQTVD 820 (821)
Q Consensus 802 ~~~~-~ik~hI~kVLfEPI~ 820 (821)
+.|+ +|+++|++||++||+
T Consensus 532 t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 532 TSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp CCHHHHHHHHHHHHTTSCCC
T ss_pred CCccHHHHHHHHHHHhcCCC
Confidence 8874 699999999999996
No 6
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=3.9e-114 Score=1000.38 Aligned_cols=488 Identities=24% Similarity=0.305 Sum_probs=439.1
Q ss_pred CCcccCCccHHHHHHhccCchhHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhh
Q 003417 291 DGSFLFSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVPNVYPVDIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYW 370 (821)
Q Consensus 291 ~GS~~~SPSaTAa~l~~~~d~~~l~YL~~~v~~~~g~VP~~yP~d~fe~Lw~VD~LqRLGIs~~F~~EI~~~Ld~i~~~~ 370 (821)
||+|++||+++ +....+.+|.++|+..|+++.+++ .|++++||+||+||||||+|||++||+++|+++|+.|
T Consensus 13 ~~~fl~~~~~~---~~~~~~~~~~~~Lk~~V~~~~~~~-----~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~ 84 (543)
T 2ong_A 13 DVNFIQSLLSD---YKEDKHVIRASELVTLVKMELEKE-----TDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDH 84 (543)
T ss_dssp CHHHHHHCCCS---SCSTHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHHHTT
T ss_pred CcccccCCCch---hhhhHHHHHHHHHHHHHHHHHhcc-----cCHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhh
Confidence 56777777655 223356799999999999998765 3899999999999999999999999999999999998
Q ss_pred hccccccccCCCCCChHHHHHHHHHHHHcCCccchhhhhccc-cCCceeeccCCccchHHHHHhHHhhhccCCCChhHHH
Q 003417 371 TEEGICWARNTRVQDLDDTSMGFRLLRLHGYDVSAEAFEHFE-KGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILG 449 (821)
Q Consensus 371 ~~~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~VS~dvf~~F~-~~g~F~~~~~e~~~dvs~~l~Ly~AS~l~~~gE~iL~ 449 (821)
. .|++|+.+. ..|+++|||+|||||||||+||||||++|+ ++|.|+|+ ..+|++|||+||||||+++|||+||+
T Consensus 85 ~-~~~~~~~~~-~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~~---l~~d~~glL~Ly~As~l~~~gE~iL~ 159 (543)
T 2ong_A 85 H-YYKNPFPKE-ERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKES---LSDDTRGLLQLYEASFLLTEGETTLE 159 (543)
T ss_dssp T-CCCSSCCCC-CCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCTT---GGGCHHHHHHHHHHHTTCCSSCHHHH
T ss_pred c-ccccccccc-cCCHHHHHHHHHHHHHcCCCccHHHHhcccCCCCCccch---hhhccHHHHHHHHHHHcCCCChHHHH
Confidence 4 466665553 469999999999999999999999999998 88999865 47899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccchhhhhhcCCChhHHHHhccCccccccchhHHHHHHHHhcCCCcchhhhhhccCCCCCCHHHH
Q 003417 450 HAKQFSAKYLKAKTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGKTLYRMPYVNNDVYL 529 (821)
Q Consensus 450 eA~~fs~~~L~~~~~~~~~Dkw~~s~~l~~eV~~aL~~P~~~~l~RleaR~yIe~Y~~~~~~wi~Kt~Yrm~~v~n~~lL 529 (821)
+|+.||++||++.+...+ ++++|++||+|||++|||+++||||||+||++|+++++ +|++||
T Consensus 160 eA~~Ft~~~L~~~~~~~~-----~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~-------------~n~~lL 221 (543)
T 2ong_A 160 SAREFATKFLEEKVNEGG-----VDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPD-------------MNPVVL 221 (543)
T ss_dssp HHHHHHHHHHHHHHHSSC-----SSSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTCSS-------------CCHHHH
T ss_pred HHHHHHHHHHHHHHhccC-----CCCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccCcc-------------ccHHHH
Confidence 999999999998654211 25679999999999999999999999999999998776 699999
Q ss_pred HHHHhhhhhhhhchhhhHHHHHHHHHhcCCC-cCCcchhhHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhhhhhhcc
Q 003417 530 ELAKLDYNNCQAVHRTEWDSLQKWYAACKLD-KFGITRRALLLAYFVASASIYEPARWQERIAWAKTAVLVETITSYFDK 608 (821)
Q Consensus 530 eLAklDFn~~Qs~hq~El~~l~rWw~e~~l~-~l~faR~r~ve~Yf~aaa~~fEPe~s~~Ri~~aK~~~L~tviDD~fD~ 608 (821)
||||+|||+||++||+||++|+|||+++||. +|||+|||++|||||++|++|||++|.+|++|||+++|++++||+||+
T Consensus 222 elAkldFn~~Q~~hq~El~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~ 301 (543)
T 2ong_A 222 ELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDV 301 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999995 699999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhhhhhhhhhhcccCCCchhhHhHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH----
Q 003417 609 QKDSCKQRRAFVREFRNCISAWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLT---- 684 (821)
Q Consensus 609 ygts~eEl~~f~~~f~~~~~~wD~~~~~~lp~~~~~k~~f~~aL~~t~nei~~~~~~~~g~~i~~~L~~~W~~l~~---- 684 (821)
||| +||+++||++++ |||..+++.+|+| ||+|| .+|++++|||+.++.+.||+++++|++++|+++++
T Consensus 302 ~gt-~eEl~~ft~ai~----rWD~~~~~~lPey--mk~~~-~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~ 373 (543)
T 2ong_A 302 YGT-LEELEQFTDLIR----RWDINSIDQLPDY--MQLCF-LALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMV 373 (543)
T ss_dssp SSC-HHHHHHHHHHHH----TTCSSTTTTSCSH--HHHHH-HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHH----hcCccccccCCch--hHHHH-HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 998 999999887555 7777788899999 99999 99999999999999999999999999999999997
Q ss_pred --HHhhCCCccc------------chHHHHHHHHHhccCcccchh----hcCChhHHHHHHHHHHHhhhhhhhHHHHhhc
Q 003417 685 --TWQDDGNSHW------------GVAELLVQTINLSAGRLLSEE----LLCHPEYARLSYLTNRICHTLGHYHKQKVQV 746 (821)
Q Consensus 685 --~W~~eg~~~~------------~~~~llv~~~~l~~G~~l~ee----l~~~p~~~~l~~li~Rl~~DL~t~~~Ek~~G 746 (821)
+|+.+||+|+ |.+.+++++++++ |..++++ +.++|++++++++|+||||||++|++|+++|
T Consensus 374 EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~-g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG 452 (543)
T 2ong_A 374 EARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRV-TDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRG 452 (543)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHH-SSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTS
T ss_pred HHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHc-CCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccC
Confidence 6999999986 5556777777776 6778887 5789999999999999999999999999999
Q ss_pred ccc-----ccccchh-------hhhhcHHHHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHH--hh---ccCCh-HHH
Q 003417 747 NRN-----NNIGNNR-------ITALSVEPDMQELVQLV-LQNSSSGIGSDVKQTFLTVAKSFY--YC---AYCDA-ETI 807 (821)
Q Consensus 747 ~~~-----YmkE~~~-------~i~~~iE~~~rEL~qlv-l~~~~~~vp~~~Kq~flnvaR~fy--Y~---a~~~~-~~i 807 (821)
+++ ||+|++. +++++|++.||++++++ +++ +.+|++|+++|+|+||+++ |. +||+| ++|
T Consensus 453 ~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~e~~l~~--~~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~ 530 (543)
T 2ong_A 453 DVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNAERVSKD--SPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPII 530 (543)
T ss_dssp CCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSS--CSSCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTH
T ss_pred CccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCCHHHHHHHHHHHHeehhheeCCCCCCCccHHH
Confidence 986 9999862 67899999999999999 864 4799999999999999874 33 68887 469
Q ss_pred HHHHhhccccccC
Q 003417 808 NSHIGKVLFQTVD 820 (821)
Q Consensus 808 k~hI~kVLfEPI~ 820 (821)
++||++||++||+
T Consensus 531 k~~i~~l~~~pi~ 543 (543)
T 2ong_A 531 HQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHTSCC-
T ss_pred HHHHHHHhccCCC
Confidence 9999999999996
No 7
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=5.4e-113 Score=984.60 Aligned_cols=482 Identities=23% Similarity=0.347 Sum_probs=419.4
Q ss_pred cccCCccHHHHHHhccC----c---hhHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 003417 293 SFLFSPSSTAYALMQTK----D---ENCLKYLTKAVQRFNGGVPNVYPVDIFEHLWAVDRLQRLGISRYFQPEIKECLDY 365 (821)
Q Consensus 293 S~~~SPSaTAa~l~~~~----d---~~~l~YL~~~v~~~~g~VP~~yP~d~fe~Lw~VD~LqRLGIs~~F~~EI~~~Ld~ 365 (821)
|..+.||.|...|++.. . .+-.+-|+..|+++.... ..+++++||+||+||||||+|||++||+++|++
T Consensus 24 ~~~~~ps~W~~~fl~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~----~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~ 99 (554)
T 3g4d_A 24 KADFQPSIWGDLFLNCPDKNIDAETEKRHQQLKEEVRKMIVAP----MANSTQKLAFIDSVQRLGVSYHFTKEIEDELEN 99 (554)
T ss_dssp -CCCCCCTTTTTTTSCCC---CHHHHHHHHHHHHHHHHHHHSC----CSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHH
T ss_pred CCCCCccccccccccCCCchhhHHHHHHHHHHHHHHHHHHHhc----ccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHH
Confidence 56778888888887741 1 134567899999885421 258899999999999999999999999999999
Q ss_pred HHhhhhccccccccCCCCCChHHHHHHHHHHHHcCCccchhhhhccc-cCCceeeccCCccchHHHHHhHHhhhccCCCC
Q 003417 366 VYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYDVSAEAFEHFE-KGGEFFCFVGQSTQAVTGVYNLYRASQVLFPG 444 (821)
Q Consensus 366 i~~~~~~~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~VS~dvf~~F~-~~g~F~~~~~e~~~dvs~~l~Ly~AS~l~~~g 444 (821)
+|++ . + .. ..|+++|||+|||||||||+||||||++|+ ++|+|+ ++...|++|||+||||||+++||
T Consensus 100 i~~~--~-~-----~~-~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~---~~l~~d~~glL~LYeAs~l~~~g 167 (554)
T 3g4d_A 100 IYHN--N-N-----DA-ENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFK---SSVTSDVRGLLELYQASYLRVHG 167 (554)
T ss_dssp HHHS--C-C-----CT-TCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBC---HHHHHCHHHHHHHHHHHTTCCTT
T ss_pred HHhc--c-C-----CC-CCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcc---cccccchHHHHHHHHHHhCCCCC
Confidence 9985 1 1 11 169999999999999999999999999999 778996 44679999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhccchhhhhhcCCChhHHHHhccCccccccchhHHHHHHHHhcCCCcchhhhhhccCCCCC
Q 003417 445 EKILGHAKQFSAKYLKAKTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGKTLYRMPYVN 524 (821)
Q Consensus 445 E~iL~eA~~fs~~~L~~~~~~~~~Dkw~~s~~l~~eV~~aL~~P~~~~l~RleaR~yIe~Y~~~~~~wi~Kt~Yrm~~v~ 524 (821)
|.||++|+.||++||++.+.. .+++|+++|+|||++|||+++||||||+||++|+++++ +
T Consensus 168 E~iLdeA~~fs~~~L~~~~~~-------~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~-------------~ 227 (554)
T 3g4d_A 168 EDILDEAISFTTHHLSLAVAS-------LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIES-------------H 227 (554)
T ss_dssp CHHHHHHHHHHHHHHHHHSTT-------CCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTT-------------C
T ss_pred cHHHHHHHHHHHHHHHHHHhc-------cCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCcc-------------c
Confidence 999999999999999986532 25779999999999999999999999999999997665 5
Q ss_pred CHHHHHHHHhhhhhhhhchhhhHHHHHHHHHhcCC-CcCCcchhhHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhhh
Q 003417 525 NDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKL-DKFGITRRALLLAYFVASASIYEPARWQERIAWAKTAVLVETIT 603 (821)
Q Consensus 525 n~~lLeLAklDFn~~Qs~hq~El~~l~rWw~e~~l-~~l~faR~r~ve~Yf~aaa~~fEPe~s~~Ri~~aK~~~L~tviD 603 (821)
|++||||||+|||+||++||+||++|+||||++|| .+|||+|||++|||||++|++||||||.+|++|||+++|+|+||
T Consensus 228 n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviD 307 (554)
T 3g4d_A 228 NKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVD 307 (554)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 68999999999999999999999999999999999999999999
Q ss_pred hhhccCCCcHHHHHHHHHHHHhhhhhhhhhhcccCCCchhhHhHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Q 003417 604 SYFDKQKDSCKQRRAFVREFRNCISAWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWL 683 (821)
Q Consensus 604 D~fD~ygts~eEl~~f~~~f~~~~~~wD~~~~~~lp~~~~~k~~f~~aL~~t~nei~~~~~~~~g~~i~~~L~~~W~~l~ 683 (821)
|+||+||| +|||++||+ +++|||..++++||+| ||+|| .+|+||+|||++++.+++|+++++|++++|++++
T Consensus 308 D~yD~ygT-leEl~~ft~----ai~RWD~~~~~~LPey--mK~~f-~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~ 379 (554)
T 3g4d_A 308 DTYDSYAT-YEELIPYTN----AIERWDIKCIDEIPEY--MKPSY-KALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLA 379 (554)
T ss_dssp HHHTSSCC-HHHHHHHHH----HHHHCCGGGGGGSCGG--GHHHH-HHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHH
T ss_pred HHhcccCC-HHHHHHHHH----HHHhcCccccccCcHH--HHHHH-HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 99999998 999999887 5558888899999999 99999 9999999999999998777899999999999999
Q ss_pred H------HHhhCCCccc------------chHHHHHHHHHhccCcccchh----hcCChhHHHHHHHHHHHhhhhhhhHH
Q 003417 684 T------TWQDDGNSHW------------GVAELLVQTINLSAGRLLSEE----LLCHPEYARLSYLTNRICHTLGHYHK 741 (821)
Q Consensus 684 ~------~W~~eg~~~~------------~~~~llv~~~~l~~G~~l~ee----l~~~p~~~~l~~li~Rl~~DL~t~~~ 741 (821)
+ +|+++||+|+ |...+++++++++ |+.++++ +.++|++.++++.|+||+|||++|++
T Consensus 380 ~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~m-g~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~ 458 (554)
T 3g4d_A 380 QSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGM-GDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKF 458 (554)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTS-CTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhc-CCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhh
Confidence 7 6999999986 4444555565554 7888887 45679999999999999999999999
Q ss_pred HHhhcccc-----ccccch-------hhhhhcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH--Hhh---ccCCh
Q 003417 742 QKVQVNRN-----NNIGNN-------RITALSVEPDMQELVQLVLQNSSSGIGSDVKQTFLTVAKSF--YYC---AYCDA 804 (821)
Q Consensus 742 Ek~~G~~~-----YmkE~~-------~~i~~~iE~~~rEL~qlvl~~~~~~vp~~~Kq~flnvaR~f--yY~---a~~~~ 804 (821)
|+++|+++ ||+|++ .+++++|++.||+|+++++++ +.+|++|++.++|+||++ .|. +|+.|
T Consensus 459 E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~--~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~ 536 (554)
T 3g4d_A 459 KHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKP--TEMPTEVLNRSLNLARVMDVLYREGDGYTYV 536 (554)
T ss_dssp ------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSS--CSSCHHHHHHHHHHHHHHHHHSCC-----CC
T ss_pred hhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 99999996 999886 367889999999999999974 579999999999999975 343 67776
Q ss_pred -HHHHHHHhhccccccCC
Q 003417 805 -ETINSHIGKVLFQTVDI 821 (821)
Q Consensus 805 -~~ik~hI~kVLfEPI~i 821 (821)
.+|+++|+++|++||++
T Consensus 537 ~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 537 GKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp CHHHHHHHHHHHTCCCCC
T ss_pred cHHHHHHHHHHhcCCCCC
Confidence 47999999999999986
No 8
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=1.8e-112 Score=979.49 Aligned_cols=481 Identities=24% Similarity=0.362 Sum_probs=424.0
Q ss_pred CcccCCccHHHHHHhccC-c-------hhHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 003417 292 GSFLFSPSSTAYALMQTK-D-------ENCLKYLTKAVQRFNGGVPNVYPVDIFEHLWAVDRLQRLGISRYFQPEIKECL 363 (821)
Q Consensus 292 GS~~~SPSaTAa~l~~~~-d-------~~~l~YL~~~v~~~~g~VP~~yP~d~fe~Lw~VD~LqRLGIs~~F~~EI~~~L 363 (821)
.|..+.||.|...|++.. + .+-.+-|+..|+++.... ..+++++||+||+||||||+|||++||+++|
T Consensus 18 ~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~----~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L 93 (550)
T 3m00_A 18 PVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLAT----GMKLADTLNLIDTIERLGISYHFEKEIDDIL 93 (550)
T ss_dssp CCCCCCCCTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCS----SCCHHHHHHHHHHHHHTTCGGGCHHHHHHHH
T ss_pred CCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhc----ccCHHHHHHHHHHHHHcCchhhhHHHHHHHH
Confidence 356778999988888742 1 133467888999886431 2588999999999999999999999999999
Q ss_pred HHHHhhhhccccccccCCCCCChHHHHHHHHHHHHcCCccchhhhhccc-cCCceeeccCCccchHHHHHhHHhhhccCC
Q 003417 364 DYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYDVSAEAFEHFE-KGGEFFCFVGQSTQAVTGVYNLYRASQVLF 442 (821)
Q Consensus 364 d~i~~~~~~~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~VS~dvf~~F~-~~g~F~~~~~e~~~dvs~~l~Ly~AS~l~~ 442 (821)
+++|++|.. ..|+++|||+|||||||||+||||||++|+ ++|+|+ ++...|++|||+||||||+++
T Consensus 94 ~~i~~~~~~----------~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~---~~l~~d~~glL~LYeAs~l~~ 160 (550)
T 3m00_A 94 DQIYNQNSN----------CNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFK---ESLASDVLGLLNLYEASHVRT 160 (550)
T ss_dssp HHHHHHCCC----------CSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBC---GGGGGCHHHHHHHHHHHTTCC
T ss_pred HHHHHhccc----------CCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCcc---ccchhchHHHHHHHHHHhcCC
Confidence 999998742 159999999999999999999999999998 788996 456799999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHhhccchhhhhhcCCChhHHHHhccCccccccchhHHHHHHH-HhcCCCcchhhhhhccCC
Q 003417 443 PGEKILGHAKQFSAKYLKAKTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIE-QYGGEDDVWIGKTLYRMP 521 (821)
Q Consensus 443 ~gE~iL~eA~~fs~~~L~~~~~~~~~Dkw~~s~~l~~eV~~aL~~P~~~~l~RleaR~yIe-~Y~~~~~~wi~Kt~Yrm~ 521 (821)
|||.||++|+.||++||++.... .+++|+++|+|||++|||+++||||||+||+ +|+++++
T Consensus 161 ~gE~iLdeA~~fs~~~L~~~~~~-------~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~~~----------- 222 (550)
T 3m00_A 161 HADDILEDALAFSTIHLESAAPH-------LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS----------- 222 (550)
T ss_dssp TTCGGGTTHHHHHHHHHHHHGGG-------CCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTT-----------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhc-------cCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhccccc-----------
Confidence 99999999999999999986532 2567999999999999999999999999999 9997665
Q ss_pred CCCCHHHHHHHHhhhhhhhhchhhhHHHHHHHHHhcCC-CcCCcchhhHHHHHHHHhhcccCCcchhHHHHHHHHHHHHH
Q 003417 522 YVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKL-DKFGITRRALLLAYFVASASIYEPARWQERIAWAKTAVLVE 600 (821)
Q Consensus 522 ~v~n~~lLeLAklDFn~~Qs~hq~El~~l~rWw~e~~l-~~l~faR~r~ve~Yf~aaa~~fEPe~s~~Ri~~aK~~~L~t 600 (821)
+|++||||||+|||+||++||+||++|+||||++|| .+|||+|||++|||||++|++||||||.+|++|||+++|+|
T Consensus 223 --~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~t 300 (550)
T 3m00_A 223 --KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMIS 300 (550)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999 68999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCcHHHHHHHHHHHHhhhhhhhhhhcccCCCchhhHhHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Q 003417 601 TITSYFDKQKDSCKQRRAFVREFRNCISAWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWE 680 (821)
Q Consensus 601 viDD~fD~ygts~eEl~~f~~~f~~~~~~wD~~~~~~lp~~~~~k~~f~~aL~~t~nei~~~~~~~~g~~i~~~L~~~W~ 680 (821)
+|||+||+||| +|||++||+ +++|||..++++||+| ||+|| .+|+||+|||++++.+++|+++++|++++|+
T Consensus 301 viDD~yD~ygT-leEl~~ft~----ai~RWD~~~~~~LPey--mK~~f-~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~ 372 (550)
T 3m00_A 301 IVDDTFDAYGT-VKELEAYTD----AIQRWDINEIDRLPDY--MKISY-KAILDLYKDYEKELSSAGRSHIVCHAIERMK 372 (550)
T ss_dssp HHHHHHHTTCC-HHHHHHHHH----HHHHCCGGGGGGSCHH--HHHHH-HHHHHHHHHHHHHHHTTTCGGGHHHHHHHHH
T ss_pred HHHHHccccCC-HHHHHHHHH----HHHhcCccccccCcHH--HHHHH-HHHHHHHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999999998 999999887 5557888899999999 99999 9999999999999988778899999999999
Q ss_pred HHHH------HHhhCCCccc------------chHHHHHHHHHhccCcccchh----hcCChhHHHHHHHHHHHhhhhhh
Q 003417 681 KWLT------TWQDDGNSHW------------GVAELLVQTINLSAGRLLSEE----LLCHPEYARLSYLTNRICHTLGH 738 (821)
Q Consensus 681 ~l~~------~W~~eg~~~~------------~~~~llv~~~~l~~G~~l~ee----l~~~p~~~~l~~li~Rl~~DL~t 738 (821)
++++ +|+++||+|+ |...+++++ ++.+ +.++++ +.++|++.++++.|+||+|||++
T Consensus 373 ~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~-f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S 450 (550)
T 3m00_A 373 EIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTS-YLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTAT 450 (550)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHH-HHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHH-HHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchh
Confidence 9998 6999999986 333344444 3332 457776 56789999999999999999999
Q ss_pred hHHHHhhcccc-----ccccch-------hhhhhcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH--Hh----hc
Q 003417 739 YHKQKVQVNRN-----NNIGNN-------RITALSVEPDMQELVQLVLQNSSSGIGSDVKQTFLTVAKSF--YY----CA 800 (821)
Q Consensus 739 ~~~Ek~~G~~~-----YmkE~~-------~~i~~~iE~~~rEL~qlvl~~~~~~vp~~~Kq~flnvaR~f--yY----~a 800 (821)
|++|+++|+++ ||+|++ .+++++|++.||+|+++++++ +.+|++|++.++|+||++ .| .+
T Consensus 451 ~k~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~--~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg 528 (550)
T 3m00_A 451 YEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP--TPVSTEFLTPILNLARIIEVTYIHNLDG 528 (550)
T ss_dssp HHHHHHTTCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSS--CSSCGGGTHHHHHHHHHHHHHTSCC---
T ss_pred HHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999996 999886 367889999999999999973 579999999999999975 33 25
Q ss_pred cCChH-HHHHHHhhccccccCC
Q 003417 801 YCDAE-TINSHIGKVLFQTVDI 821 (821)
Q Consensus 801 ~~~~~-~ik~hI~kVLfEPI~i 821 (821)
|+.++ +|+++|+++|++||++
T Consensus 529 ~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 529 YTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp --CCHHHHHHHHHHHHTCCCCC
T ss_pred CCCccHHHHHHHHHHhhCCCCC
Confidence 67665 6999999999999986
No 9
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=2e-112 Score=988.60 Aligned_cols=486 Identities=23% Similarity=0.294 Sum_probs=404.3
Q ss_pred HhhcccC--CCcccCCccHHHHHHhccCchhHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 003417 284 LLKLQCQ--DGSFLFSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVPNVYPVDIFEHLWAVDRLQRLGISRYFQPEIKE 361 (821)
Q Consensus 284 v~~~~~~--~GS~~~SPSaTAa~l~~~~d~~~l~YL~~~v~~~~g~VP~~yP~d~fe~Lw~VD~LqRLGIs~~F~~EI~~ 361 (821)
..++++. +|+|+.||++ + +....+.+|.++|+..|+++.+++ .|++++||+||+||||||+|||++||++
T Consensus 37 ~~~~~ps~W~~~fl~~~~~-~--~~~~~~~~~~~~Lk~~Vr~~~~~~-----~d~~~~l~lID~lqrLGi~~hFe~EI~~ 108 (569)
T 2j5c_A 37 TGGYQPTLWDFSTIQSFDS-E--YKEEKHLMRAAGMIDQVKMMLQEE-----VDSIRRLELIDDLRRLGISCHFEREIVE 108 (569)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred CCCCCCCcCCcccccCCCc-h--hhhHHHHHHHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHhCCchhhhHHHHHH
Confidence 3445543 7899999865 3 223468899999999999998765 3899999999999999999999999999
Q ss_pred HHHHHH-hhhhccccccccCCCCCChHHHHHHHHHHHHcCCccchhhhhccc-cCC-ceeeccCCccchHHHHHhHHhhh
Q 003417 362 CLDYVY-RYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYDVSAEAFEHFE-KGG-EFFCFVGQSTQAVTGVYNLYRAS 438 (821)
Q Consensus 362 ~Ld~i~-~~~~~~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~VS~dvf~~F~-~~g-~F~~~~~e~~~dvs~~l~Ly~AS 438 (821)
+|+++| +.+. ....|+++|||+|||||||||+||||||++|+ ++| .|+|+ ..+|++|||+|||||
T Consensus 109 ~L~~i~~~~~~---------~~~~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~~---l~~dv~glL~LY~As 176 (569)
T 2j5c_A 109 ILNSKYYTNNE---------IDERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPS---LVDDTRGLLQLYEAS 176 (569)
T ss_dssp HHHHHTTSSCC---------SCTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCGG---GGGCHHHHHHHHHHH
T ss_pred HHHHHHHhccC---------cccCChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCccccc---hhhccHHHHHHHHHH
Confidence 999999 7531 12369999999999999999999999999998 888 99876 478999999999999
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHHhhccchhhhhhcCCChhHHHHhccCccccccchhHHHHHHHHhcCCCcchhhhhhc
Q 003417 439 QVLFPGEKILGHAKQFSAKYLKAKTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGKTLY 518 (821)
Q Consensus 439 ~l~~~gE~iL~eA~~fs~~~L~~~~~~~~~Dkw~~s~~l~~eV~~aL~~P~~~~l~RleaR~yIe~Y~~~~~~wi~Kt~Y 518 (821)
|+++|||+||++|+.||++||++.+.. + ++++|++||+|||++|||+++||||||+||++|+++++
T Consensus 177 ~l~~~gE~iLdeA~~Ft~~~L~~~~~~-~-----~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~-------- 242 (569)
T 2j5c_A 177 FLSAQGEETLRLARDFATKFLQKRVLV-D-----KDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPD-------- 242 (569)
T ss_dssp TTCCTTCHHHHHHHHHHHHTTSSCC----------CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTCTT--------
T ss_pred hcCCCChHHHHHHHHHHHHHHHHHHhh-c-----CCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccCcc--------
Confidence 999999999999999999999875432 1 25679999999999999999999999999999998776
Q ss_pred cCCCCCCHHHHHHHHhhhhhhhhchhhhHHHHHHHHHhcCCC-cCCcchhhHHHHHHHHhhcccCCcchhHHHHHHHHHH
Q 003417 519 RMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKLD-KFGITRRALLLAYFVASASIYEPARWQERIAWAKTAV 597 (821)
Q Consensus 519 rm~~v~n~~lLeLAklDFn~~Qs~hq~El~~l~rWw~e~~l~-~l~faR~r~ve~Yf~aaa~~fEPe~s~~Ri~~aK~~~ 597 (821)
+|++||||||+|||+||++||+||++|+|||+++||. +|||+|||++|||||++|++|||++|.+|++|||+++
T Consensus 243 -----~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~ 317 (569)
T 2j5c_A 243 -----MNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINA 317 (569)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Confidence 6999999999999999999999999999999999995 6999999999999999999999999999999999999
Q ss_pred HHHhhhhhhccCCCcHHHHHHHHHHHHhhhhhhhhhhcccCCCchhhHhHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Q 003417 598 LVETITSYFDKQKDSCKQRRAFVREFRNCISAWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDIGGNLRE 677 (821)
Q Consensus 598 L~tviDD~fD~ygts~eEl~~f~~~f~~~~~~wD~~~~~~lp~~~~~k~~f~~aL~~t~nei~~~~~~~~g~~i~~~L~~ 677 (821)
|++++||+||+||| +||+++||++++ |||..+++.+|+| ||+|| .+|++++|||+.++.+.||+++++|+++
T Consensus 318 litviDD~fD~ygT-~eEl~~ft~ai~----rWD~~~~~~lPey--mk~~~-~aL~~~~~ei~~~~~~~~~~~~~~~l~~ 389 (569)
T 2j5c_A 318 LVTTIDDVFDIYGT-LEELQLFTTAIQ----RWDIESMKQLPPY--MQICY-LALFNFVNEMAYDTLRDKGFDSTPYLRK 389 (569)
T ss_dssp HHHHHHHHHHTTCC-HHHHHHHHHHHH----HTSSGGGGGSCHH--HHHHH-HHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhccCCC-HHHHHHHHHHHH----HcCccccccCCch--hHHHH-HHHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 99999999999998 999999887555 7777788899998 99999 9999999999999999999999999999
Q ss_pred HHHHHHH------HHhhCCCccc------------chHHHHHHHHHhccCcccchh----hcCChhHHHHHHHHHHHhhh
Q 003417 678 AWEKWLT------TWQDDGNSHW------------GVAELLVQTINLSAGRLLSEE----LLCHPEYARLSYLTNRICHT 735 (821)
Q Consensus 678 ~W~~l~~------~W~~eg~~~~------------~~~~llv~~~~l~~G~~l~ee----l~~~p~~~~l~~li~Rl~~D 735 (821)
+|+++++ +|+.+||+|+ |.+.+++++++++ |..++++ +.++|++++++++|+|||||
T Consensus 390 ~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~-g~~lt~e~~e~l~~~p~i~~~~~~i~RL~ND 468 (569)
T 2j5c_A 390 VWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRL-TDSIEEEAAESMHKYHDIVRASCTILRLADD 468 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHS-CSSCCHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHc-CCCCCHHHHHHhhccHHHHHHHHHHHHHhcc
Confidence 9999997 6999999986 4555777777766 6778887 57899999999999999999
Q ss_pred hhhhHHHHhhcccc-----ccccchh-------hhhhcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH--h---
Q 003417 736 LGHYHKQKVQVNRN-----NNIGNNR-------ITALSVEPDMQELVQLVLQNSSSGIGSDVKQTFLTVAKSFY--Y--- 798 (821)
Q Consensus 736 L~t~~~Ek~~G~~~-----YmkE~~~-------~i~~~iE~~~rEL~qlvl~~~~~~vp~~~Kq~flnvaR~fy--Y--- 798 (821)
|++|++|+++|+++ ||+|++. +++++|++.||+|++++++ +.+|++|+++|+|+||+++ |
T Consensus 469 I~S~~~E~~rG~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~---~~vp~~~~~~~~nlaR~~~~~Y~~~ 545 (569)
T 2j5c_A 469 MGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKEMMT---SSFSKYFVEVSANLARMAQWIYQHE 545 (569)
T ss_dssp HHC----------CCHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred cchhhhhcccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHheeehhccCC
Confidence 99999999999986 9999862 6789999999999999997 3799999999999999863 2
Q ss_pred -hccCCh-HHHHHHHhhccccccC
Q 003417 799 -CAYCDA-ETINSHIGKVLFQTVD 820 (821)
Q Consensus 799 -~a~~~~-~~ik~hI~kVLfEPI~ 820 (821)
.+||+| .+|++||++||++||+
T Consensus 546 ~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 546 SDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp SCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred CcCCCCchHHHHHHHHHHhccCCC
Confidence 268877 4799999999999996
No 10
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=4.7e-112 Score=982.62 Aligned_cols=496 Identities=21% Similarity=0.275 Sum_probs=423.1
Q ss_pred HhhcccC--CCcccCCccHHHHHHhccCchhHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 003417 284 LLKLQCQ--DGSFLFSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVPNVYPVDIFEHLWAVDRLQRLGISRYFQPEIKE 361 (821)
Q Consensus 284 v~~~~~~--~GS~~~SPSaTAa~l~~~~d~~~l~YL~~~v~~~~g~VP~~yP~d~fe~Lw~VD~LqRLGIs~~F~~EI~~ 361 (821)
..++++. ||+|++||++| +....+.+|.++|+..|+++.+++ .|++++||+||+||||||+|||++||++
T Consensus 8 ~~~~~ps~W~~~fl~s~~~~---~~~~~~~~~~~~Lk~~V~~~~~~~-----~d~~~~l~lvD~lqrLGi~~hF~~EI~~ 79 (549)
T 1n1b_A 8 SGNYQPALWDSNYIQSLNTP---YTEERHLDRKAELIVQVRILLKEK-----MEPVQQLELIHDLKYLGLSDFFQDEIKE 79 (549)
T ss_dssp -------CCCHHHHHHCCCS---TTSHHHHHHHHHHHHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCGGGGHHHHHH
T ss_pred CCCCCCCCCCCCcccCCCcc---hhhhHHHHHHHHHHHHHHHHHhcc-----cCHHHHHHhHHHHHhCCchhhhHHHHHH
Confidence 4455553 67888888776 233357799999999999998765 3899999999999999999999999999
Q ss_pred HHHHHHhhhhccccccccCCCCCChHHHHHHHHHHHHcCCccchhhhhccc-cCC-ceeeccCCccchHHHHHhHHhhhc
Q 003417 362 CLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYDVSAEAFEHFE-KGG-EFFCFVGQSTQAVTGVYNLYRASQ 439 (821)
Q Consensus 362 ~Ld~i~~~~~~~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~VS~dvf~~F~-~~g-~F~~~~~e~~~dvs~~l~Ly~AS~ 439 (821)
+|+++|+.+... +..+....|+++|||+|||||||||+||||||++|+ ++| .|+|+ ..+|++|||+||||||
T Consensus 80 ~L~~i~~~~~~~---~~~~~~~~dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~~g~~F~~~---l~~d~~glL~LY~As~ 153 (549)
T 1n1b_A 80 ILGVIYNEHKCF---HNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKAS---LAQDTKGMLQLYEASF 153 (549)
T ss_dssp HHHHHHHHCHHH---HHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGG---GGGCHHHHHHHHHHHT
T ss_pred HHHHHHhhhccc---cccccccCChhhchhhhhHHHhcCCCcCHHHHhhccCCCCCccchh---hhhccHHHHHHHHHHh
Confidence 999999976431 111222469999999999999999999999999998 788 99876 4679999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHhhccchhhhhhcCCChhHHHHhccCccccccchhHHHHHHHHhcCCCcchhhhhhcc
Q 003417 440 VLFPGEKILGHAKQFSAKYLKAKTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGKTLYR 519 (821)
Q Consensus 440 l~~~gE~iL~eA~~fs~~~L~~~~~~~~~Dkw~~s~~l~~eV~~aL~~P~~~~l~RleaR~yIe~Y~~~~~~wi~Kt~Yr 519 (821)
+++|||+||++|+.||++||++.+... .|.++++|++||+|||++|||+++||||||+||++|+++++
T Consensus 154 l~~~gE~iL~eA~~Ft~~~L~~~~~~~---~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~--------- 221 (549)
T 1n1b_A 154 LLRKGEDTLELAREFATKCLQKKLDEG---GNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPD--------- 221 (549)
T ss_dssp TCCTTCHHHHHHHHHHHHHHHHHTC---------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTT---------
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHhcc---cccCCCcHHHHHHHHhcCchhcCchHHHHHHHHHHhccccc---------
Confidence 999999999999999999999875431 24446789999999999999999999999999999998776
Q ss_pred CCCCCCHHHHHHHHhhhhhhhhchhhhHHHHHHHHHhcCCC-cCCcchhhHHHHHHHHhhcccCCcchhHHHHHHHHHHH
Q 003417 520 MPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKLD-KFGITRRALLLAYFVASASIYEPARWQERIAWAKTAVL 598 (821)
Q Consensus 520 m~~v~n~~lLeLAklDFn~~Qs~hq~El~~l~rWw~e~~l~-~l~faR~r~ve~Yf~aaa~~fEPe~s~~Ri~~aK~~~L 598 (821)
+|++||||||+|||+||++||+||++|+|||+++||. +|||+|||++|||||++|++|||++|.+|++|||+++|
T Consensus 222 ----~n~~lLelAkldFn~~Q~~hq~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l 297 (549)
T 1n1b_A 222 ----MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVL 297 (549)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHH
T ss_pred ----ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999995 69999999999999999999999999999999999999
Q ss_pred HHhhhhhhccCCCcHHHHHHHHHHHHhhhhhhhhhhcccCCCchhhHhHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Q 003417 599 VETITSYFDKQKDSCKQRRAFVREFRNCISAWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDIGGNLREA 678 (821)
Q Consensus 599 ~tviDD~fD~ygts~eEl~~f~~~f~~~~~~wD~~~~~~lp~~~~~k~~f~~aL~~t~nei~~~~~~~~g~~i~~~L~~~ 678 (821)
++++||+||+||| +||+++||+++ +|||..+++.+|+| ||+|| .+|++++|||+.++.+.||+++++|++++
T Consensus 298 ~tviDD~yD~~gt-~eEl~~ft~ai----~rWD~~~~~~lPey--mk~~~-~aL~d~~~ei~~~~~~~~~~~~~~~l~~~ 369 (549)
T 1n1b_A 298 ATVIDDIYDVYGT-LDELELFTDTF----KRWDTESITRLPYY--MQLCY-WGVHNYISDAAYDILKEHGFFCLQYLRKS 369 (549)
T ss_dssp HHHHHHHHHTTSC-HHHHHHHHHHH----HHTCSSGGGGSCHH--HHHHH-HHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHhccCCC-HHHHHHHHHHH----HhcCccccccCccH--HHHHH-HHHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 9999999999998 99999988755 47878888899999 99999 99999999999999999999999999999
Q ss_pred HHHHHH------HHhhCCCccc------------chHHHHHHHHHhccCcccchhh-----cCChhHHHHHHHHHHHhhh
Q 003417 679 WEKWLT------TWQDDGNSHW------------GVAELLVQTINLSAGRLLSEEL-----LCHPEYARLSYLTNRICHT 735 (821)
Q Consensus 679 W~~l~~------~W~~eg~~~~------------~~~~llv~~~~l~~G~~l~eel-----~~~p~~~~l~~li~Rl~~D 735 (821)
|+++++ +|+.+||+|+ |.+.+++++++++ |..+++++ .++|++++++++|+|||||
T Consensus 370 w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~-g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~ND 448 (549)
T 1n1b_A 370 VVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTF-ANASHDTAVIDSLYQYHDILCLAGIILRLPDD 448 (549)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTS-TTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHc-CCCCcHHHHHhhhcccHHHHHHHHHHHHHhcc
Confidence 999997 7999999986 5555666776665 67777775 6789999999999999999
Q ss_pred hhhhHHHHhhcccc-----ccccch-------hhhhhcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH--Hhh--
Q 003417 736 LGHYHKQKVQVNRN-----NNIGNN-------RITALSVEPDMQELVQLVLQNSSSGIGSDVKQTFLTVAKSF--YYC-- 799 (821)
Q Consensus 736 L~t~~~Ek~~G~~~-----YmkE~~-------~~i~~~iE~~~rEL~qlvl~~~~~~vp~~~Kq~flnvaR~f--yY~-- 799 (821)
|++|++|+++|+++ ||+|++ .++++++++.|+++++++++. +.+|++|++.++|+||++ .|.
T Consensus 449 i~S~~~E~~rG~v~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~--~~vp~~~~~~~~n~~R~~~~~Y~~~ 526 (549)
T 1n1b_A 449 LGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAG--YPFPDGMVAGAANIGRVAQFIYLHG 526 (549)
T ss_dssp HC---------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHHHHHTTTS
T ss_pred cchhhhhhccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHeeehheeCC
Confidence 99999999999985 999886 368899999999999999973 479999999999999975 444
Q ss_pred -ccCChH-HHHHHHhhccccccC
Q 003417 800 -AYCDAE-TINSHIGKVLFQTVD 820 (821)
Q Consensus 800 -a~~~~~-~ik~hI~kVLfEPI~ 820 (821)
+|+.++ +|+++|+++|++||+
T Consensus 527 Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 527 DGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp CCC----CHHHHHHHHHHTSCCC
T ss_pred CCCCCCcHHHHHHHHHHhcCCCC
Confidence 587764 699999999999996
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=99.94 E-value=2.9e-27 Score=258.47 Aligned_cols=222 Identities=8% Similarity=0.053 Sum_probs=178.6
Q ss_pred hhhhhhchhhhHHH-HHHHHHhcCCCcCCcchhhHHHHHHHHhhcccCCcchhHHH-HHHHHHHHHHhhhhhhccC--CC
Q 003417 536 YNNCQAVHRTEWDS-LQKWYAACKLDKFGITRRALLLAYFVASASIYEPARWQERI-AWAKTAVLVETITSYFDKQ--KD 611 (821)
Q Consensus 536 Fn~~Qs~hq~El~~-l~rWw~e~~l~~l~faR~r~ve~Yf~aaa~~fEPe~s~~Ri-~~aK~~~L~tviDD~fD~y--gt 611 (821)
|..-+..|.+|++. +.+||+++|+.+.+|+|+|+++||||.++++|+|+++.+|+ .+||.+++++++||+||.| ||
T Consensus 11 ~p~~~~p~~~e~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~ 90 (337)
T 1ps1_A 11 LPGRQSPDHARAEAEQLAWPRSLGLIRSDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGEN 90 (337)
T ss_dssp SCCCCCTTHHHHHHSTTHHHHHTTSCCSHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCC
Confidence 55556778888865 45699999997779999999999999999999999999999 9999999999999999999 67
Q ss_pred cHHHHHHHHHHHHhhhhhhhhhhcccCCCchhhHhHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH------H
Q 003417 612 SCKQRRAFVREFRNCISAWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLT------T 685 (821)
Q Consensus 612 s~eEl~~f~~~f~~~~~~wD~~~~~~lp~~~~~k~~f~~aL~~t~nei~~~~~~~~g~~i~~~L~~~W~~l~~------~ 685 (821)
+||++.|++++.+|+. . .+|++ ++.++ .+++++.+++... .+.....++++.|.+++. +
T Consensus 91 -~ee~~~~~~~l~~~~~----~---~~p~~--~~~~~-~~l~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Ea~ 155 (337)
T 1ps1_A 91 -PEDTKQLTDQVAAALD----G---PLPDT--APPIA-HGFADIWRRTCEG----MTPAWCARSARHWRNYFDGYVDEAE 155 (337)
T ss_dssp -HHHHHHHHHHHHGGGT----S---CCCTT--SCHHH-HHHHHHHHHHHTT----SCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHcC----C---CCCCC--CChHH-HHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999986665542 1 36777 89999 9999999998764 456678899999999997 4
Q ss_pred HhhCCCcc-c------------chHHHHHHHHHhccCcccchhhcCCh---hHHHHHHHHHHHhhhhhhhHHHHhhcccc
Q 003417 686 WQDDGNSH-W------------GVAELLVQTINLSAGRLLSEELLCHP---EYARLSYLTNRICHTLGHYHKQKVQVNRN 749 (821)
Q Consensus 686 W~~eg~~~-~------------~~~~llv~~~~l~~G~~l~eel~~~p---~~~~l~~li~Rl~~DL~t~~~Ek~~G~~~ 749 (821)
|..+|++| + |...++..+.+ ++|..+++++.++| ++.++++.+.||+|||.||++|+++|+..
T Consensus 156 ~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~-~~g~~l~~~~~~~p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~ 234 (337)
T 1ps1_A 156 SRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAER-AGRFEVPHRVFDSAVMSAMLQIAVDVNLLLNDIASLEKEEARGEQN 234 (337)
T ss_dssp TC-------CHHHHHHHHHHHTCHHHHHHHHHH-HHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCC
T ss_pred HHhcCCCCCCHHHHHHHcccccchhhHHHHHHH-HcCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcc
Confidence 78889998 6 33334444434 44788999999888 67788999999999999999999999975
Q ss_pred -----ccccch-------hhhhhcHHHHHHHHHHHH
Q 003417 750 -----NNIGNN-------RITALSVEPDMQELVQLV 773 (821)
Q Consensus 750 -----YmkE~~-------~~i~~~iE~~~rEL~qlv 773 (821)
||++++ .++.+++++.++++++++
T Consensus 235 n~V~~~m~~~g~s~eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 235 NMVMILRREHGWSKSRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp SHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888875 356788888888888754
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=99.93 E-value=1.2e-25 Score=241.40 Aligned_cols=212 Identities=13% Similarity=0.012 Sum_probs=169.2
Q ss_pred chhhhHHH-HHHHHHhcCCCcCCcchhhHHHHHHHHhhcccCCcchhHHH-HHHHHHHHHHhhhhhhccCCCcHHHHHHH
Q 003417 542 VHRTEWDS-LQKWYAACKLDKFGITRRALLLAYFVASASIYEPARWQERI-AWAKTAVLVETITSYFDKQKDSCKQRRAF 619 (821)
Q Consensus 542 ~hq~El~~-l~rWw~e~~l~~l~faR~r~ve~Yf~aaa~~fEPe~s~~Ri-~~aK~~~L~tviDD~fD~ygts~eEl~~f 619 (821)
-|.+|++. +.+||+++|+.+++|+|+|+++||||.++++|+|+++.+|+ .+||.+++++++||+||. |+ ++|++.|
T Consensus 13 P~~~~~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~-~~e~~~~ 90 (300)
T 1di1_A 13 PRVKEVQDEVDGYFLENWKFPSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MS-FADGEAY 90 (300)
T ss_dssp TTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SC-HHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CC-HHHHHHH
Confidence 36677765 55667999998789999999999999999999999999999 899999999999999999 77 9999999
Q ss_pred HHHHHhhhhhhhhhhcccCCCchhhHhHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH-----HHhhCCCccc
Q 003417 620 VREFRNCISAWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLT-----TWQDDGNSHW 694 (821)
Q Consensus 620 ~~~f~~~~~~wD~~~~~~lp~~~~~k~~f~~aL~~t~nei~~~~~~~~g~~i~~~L~~~W~~l~~-----~W~~eg~~~~ 694 (821)
++++.+|+ . ...+|++ ++.++ .+|++++++++..+ + .+.++.|+.+++ +|..+|++|+
T Consensus 91 ~~~~~~~~----~--~~~lp~~--~~~~~-~~l~d~~~~~~~~~-~-------~~~~~~~~~~~~~~~ea~~~~~~~~Ps 153 (300)
T 1di1_A 91 NNRLIPIS----R--GDVLPDR--TKPEE-FILYDLWESMRAHD-A-------ELANEVLEPTFVFMRAQTDRARLSIHE 153 (300)
T ss_dssp HHHHHHHH----H--TSSCCCT--TCHHH-HHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHHTTTCCCCCCCCS
T ss_pred HHHHHHHc----c--CCCCCCC--ccHHH-HHHHHHHHHHHhhC-h-------HHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 98776544 3 2457887 99999 99999999999877 2 356677777766 4777888876
Q ss_pred ------------chHHHHHHHHHhccCcccchhhc-CChhHHHHHHHHHHHhhhhhhhHHHHhhcc--------c-c---
Q 003417 695 ------------GVAELLVQTINLSAGRLLSEELL-CHPEYARLSYLTNRICHTLGHYHKQKVQVN--------R-N--- 749 (821)
Q Consensus 695 ------------~~~~llv~~~~l~~G~~l~eel~-~~p~~~~l~~li~Rl~~DL~t~~~Ek~~G~--------~-~--- 749 (821)
|...++..+.+ ++|..++++++ ..+++.++++.+.||+|||.+|++|+++|+ + +
T Consensus 154 ~eeYl~~r~~s~g~~~~~~~~~~-~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~ 232 (300)
T 1di1_A 154 LGHYLEYREKDVGKALLSALMRF-SMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVK 232 (300)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH-HHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHH
T ss_pred HHHHHHHHhhhccHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHH
Confidence 22334444434 44777888754 568999999999999999999999999988 3 2
Q ss_pred -ccccch-------hhhhhcHHHHHHHHHHHH
Q 003417 750 -NNIGNN-------RITALSVEPDMQELVQLV 773 (821)
Q Consensus 750 -YmkE~~-------~~i~~~iE~~~rEL~qlv 773 (821)
||++++ .++.+++++.++++++++
T Consensus 233 ~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 233 VLAEESKLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888775 356788888888888754
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=99.92 E-value=1.1e-24 Score=236.49 Aligned_cols=219 Identities=12% Similarity=0.013 Sum_probs=168.5
Q ss_pred hhhhhhhchhhhHHHH-HHHHHhcCCCcCCcchhhHHHHHHHHhhcccCCcchhHHH-HHHHHHHHHHhhhhhhccCCCc
Q 003417 535 DYNNCQAVHRTEWDSL-QKWYAACKLDKFGITRRALLLAYFVASASIYEPARWQERI-AWAKTAVLVETITSYFDKQKDS 612 (821)
Q Consensus 535 DFn~~Qs~hq~El~~l-~rWw~e~~l~~l~faR~r~ve~Yf~aaa~~fEPe~s~~Ri-~~aK~~~L~tviDD~fD~ygts 612 (821)
.|..-...|.+|++.. .+||+++|+.+.+|+|+|+++||||.++++|+|+++.+|+ .+||.+++++++||+||. |+
T Consensus 20 p~p~~~~p~~~e~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~- 97 (320)
T 3bny_A 20 TFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MS- 97 (320)
T ss_dssp SCCCCCCTTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SC-
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHcCCCCChHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CC-
Confidence 3555667788888765 5566999996559999999999999999999999999999 899999999999999999 77
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccCCCchhhHhHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH-----HHh
Q 003417 613 CKQRRAFVREFRNCISAWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLT-----TWQ 687 (821)
Q Consensus 613 ~eEl~~f~~~f~~~~~~wD~~~~~~lp~~~~~k~~f~~aL~~t~nei~~~~~~~~g~~i~~~L~~~W~~l~~-----~W~ 687 (821)
++|++.|++++.+ |+. +..+|++ ++.++ .+|++++++++..+ + .+.++.|+.++. +|.
T Consensus 98 ~~e~~~~~~~l~~----~~~--~~~~p~~--~~~~~-~al~d~~~e~~~~~-~-------~~~~~~~~~~~~~~~e~~~~ 160 (320)
T 3bny_A 98 FEEGSAYNEKLIP----ISR--GDVLPDR--SIPVE-YIIYDLWESMRAHD-R-------EMADEILEPVFLFMRAQTDR 160 (320)
T ss_dssp HHHHHHHHHHHHH----HHH--TSSCCCT--TSHHH-HHHHHHHHHHHHHH-H-------HHHHHTHHHHHHHHHHTSCC
T ss_pred hhhHHHHHHHHHH----Hhc--CCCCCCC--cCHHH-HHHHHHHHHHHhhC-H-------HHHHHHHHHHHHHHHHHhhh
Confidence 9999999886664 433 2457887 99999 99999999999875 2 255555655553 477
Q ss_pred hCCCccc------------chHHHHHHHHHhccCcccchhhc-CChhHHHHHHHHHHHhhhhhhhHHHHhhcc-------
Q 003417 688 DDGNSHW------------GVAELLVQTINLSAGRLLSEELL-CHPEYARLSYLTNRICHTLGHYHKQKVQVN------- 747 (821)
Q Consensus 688 ~eg~~~~------------~~~~llv~~~~l~~G~~l~eel~-~~p~~~~l~~li~Rl~~DL~t~~~Ek~~G~------- 747 (821)
.+|++|+ |...++..+.+ ++|..++++++ ..+++.++++.+.|++|||.||++|+++|+
T Consensus 161 ~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~-~~g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~ 239 (320)
T 3bny_A 161 TRARPMGLGGYLEYRERDVGKELLAALMRF-SMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGG 239 (320)
T ss_dssp CCCCCCCHHHHHHHHHTCHHHHHHHHHHHH-HHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred ccCCCCCHHHHHHHhhhcccHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHhhcccccccc
Confidence 7788876 22333344434 44777887753 568999999999999999999999999987
Q ss_pred -c-c----ccccch-------hhhhhcHHHHHHHHHHHH
Q 003417 748 -R-N----NNIGNN-------RITALSVEPDMQELVQLV 773 (821)
Q Consensus 748 -~-~----YmkE~~-------~~i~~~iE~~~rEL~qlv 773 (821)
+ + ||++++ .++.+++++.++++++++
T Consensus 240 ~~~N~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 240 ILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp -CCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2 888875 245677777777776643
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=99.86 E-value=1.1e-21 Score=218.85 Aligned_cols=209 Identities=11% Similarity=0.020 Sum_probs=170.0
Q ss_pred HHHHHHHhcCCCcCCcchhhHHHHHHHHhhcccCCcchhHHH-HHHHHHHHHHhhhhhhcc--CC-CcHHHHHHHHHHHH
Q 003417 549 SLQKWYAACKLDKFGITRRALLLAYFVASASIYEPARWQERI-AWAKTAVLVETITSYFDK--QK-DSCKQRRAFVREFR 624 (821)
Q Consensus 549 ~l~rWw~e~~l~~l~faR~r~ve~Yf~aaa~~fEPe~s~~Ri-~~aK~~~L~tviDD~fD~--yg-ts~eEl~~f~~~f~ 624 (821)
++.+||+++|+-.-+++|+|+++||||.++++|+|+.+.+|+ .+||..++++++||+||. +| + .+|++.|++++.
T Consensus 65 ~~~~W~~~~gl~~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~-~~~~~~~~~~l~ 143 (382)
T 3kb9_A 65 TTRTWLLEKRLMPADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGR-AGAWRRLRGLLH 143 (382)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccC-HHHHHHHHHHHH
Confidence 468999999996558999999999999999999999999999 999999999999999997 66 6 999999998887
Q ss_pred hhhhhhhhhhcccCCCchhhHhHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH------HHhhCCCccc----
Q 003417 625 NCISAWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLT------TWQDDGNSHW---- 694 (821)
Q Consensus 625 ~~~~~wD~~~~~~lp~~~~~k~~f~~aL~~t~nei~~~~~~~~g~~i~~~L~~~W~~l~~------~W~~eg~~~~---- 694 (821)
+++.. ...+|.+ ++.++ .+|+++.+++...+.+ ....++++.|+++++ +|+.+|++|+
T Consensus 144 ~~l~~-----~~~~p~~--~~p~~-~al~dl~~~~~~~~~~----~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEY 211 (382)
T 3kb9_A 144 TALDS-----PGDHLHH--EDTLV-AGFADSVRRLYAFLPA----TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEY 211 (382)
T ss_dssp HHHHS-----CGGGTTC--SSHHH-HHHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHhcC-----CCCCCCC--CChHH-HHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 65432 1123555 78899 9999999998765433 347899999999997 5888999986
Q ss_pred --------chHHHHHHHHHhccCcccchhhcCChhH---HHHHHHHHHHhhhhhhhHHHHhhcccc-----ccccch---
Q 003417 695 --------GVAELLVQTINLSAGRLLSEELLCHPEY---ARLSYLTNRICHTLGHYHKQKVQVNRN-----NNIGNN--- 755 (821)
Q Consensus 695 --------~~~~llv~~~~l~~G~~l~eel~~~p~~---~~l~~li~Rl~~DL~t~~~Ek~~G~~~-----YmkE~~--- 755 (821)
|...++..+ .+++|..+++++..+|++ .++++.+.||+|||.+|++|+++|+.. ||++++
T Consensus 212 l~~r~~s~g~~~~~~l~-~~~~g~~l~~~~~~~p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~ 290 (382)
T 3kb9_A 212 LELRRLTFAHWIWTDLL-EPSSGCELPDAVRKHPAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTL 290 (382)
T ss_dssp HHHHHHHTTHHHHHHHH-HHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCH
T ss_pred HHHHhhhcCHHHHHHHH-HHHcCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCH
Confidence 222233333 333477899999888875 778889999999999999999999885 888775
Q ss_pred ----hhhhhcHHHHHHHHHH
Q 003417 756 ----RITALSVEPDMQELVQ 771 (821)
Q Consensus 756 ----~~i~~~iE~~~rEL~q 771 (821)
.++.+++++.++++++
T Consensus 291 eeA~~~v~~~i~~~~k~~~~ 310 (382)
T 3kb9_A 291 EEAIGEVRRRVEECITEFLA 310 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 2566778888888776
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=98.95 E-value=2.9e-09 Score=120.35 Aligned_cols=199 Identities=10% Similarity=0.070 Sum_probs=121.3
Q ss_pred HHHHHHHhcCC-CcCCcchhhHHHHHHHHhhcccCCcc-hhHHH-HHHHHHHHHHhhhhhh-ccCCCcHHHH-HHHHHHH
Q 003417 549 SLQKWYAACKL-DKFGITRRALLLAYFVASASIYEPAR-WQERI-AWAKTAVLVETITSYF-DKQKDSCKQR-RAFVREF 623 (821)
Q Consensus 549 ~l~rWw~e~~l-~~l~faR~r~ve~Yf~aaa~~fEPe~-s~~Ri-~~aK~~~L~tviDD~f-D~ygts~eEl-~~f~~~f 623 (821)
++..|..+.++ .. +=.|++...+-|--++.+.-|.- +.+|+ ..+|......++||.| |..|.+.+.+ ..+..+
T Consensus 134 ~~~~W~~~~~~l~~-~~~~~~~~~~~~~llaa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a- 211 (433)
T 3v1v_A 134 RIKRWAEDEVQLYP-EEWEGQFDGFSVGRYMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLA- 211 (433)
T ss_dssp HHHHHHHHTSCCCC-----CCSCHHHHHHHHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHHH-
T ss_pred HHHHHHHHcCCCCC-HHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHH-
Confidence 56789998755 32 11244444554444455566777 68888 6789999999999995 9866223321 112211
Q ss_pred HhhhhhhhhhhcccCCC-ch--hhHhHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH------HHhhCCCccc
Q 003417 624 RNCISAWDYINRRRWDS-NK--KGERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLT------TWQDDGNSHW 694 (821)
Q Consensus 624 ~~~~~~wD~~~~~~lp~-~~--~~k~~f~~aL~~t~nei~~~~~~~~g~~i~~~L~~~W~~l~~------~W~~eg~~~~ 694 (821)
...+..... ..+.-|. .. .-.-+. .+++++++++...+.+.+ ..++++.|+++++ +|..++++|+
T Consensus 212 ~~~~d~l~~-~~~g~p~~~~~~~~dp~~-~al~d~~~~l~~~a~~~q----~~r~~~~~~~~~~a~l~EA~W~~~g~vPs 285 (433)
T 3v1v_A 212 HTAIDHFHS-TAEYTPTWQASLAADAPR-RAYDSAMGYFVRAATPSQ----SDRYRHDMARLHLGYLAEGAWAQTGHVPE 285 (433)
T ss_dssp HTTTSCCCC-CTTTHHHHHHHTTSSHHH-HHHHHHHHHHHHHSCHHH----HHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHhhhc-ccCCCCccccccCCchHH-HHHHHHHHHHHhhcCHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 012211100 0000000 00 012345 889999999988776655 6778999999887 6888999986
Q ss_pred chHHHHHH----------HHHhccCcccchhhcCChhH---HHHHHHHHHHhhhhhhhHHHHhhc-cc-c----ccccch
Q 003417 695 GVAELLVQ----------TINLSAGRLLSEELLCHPEY---ARLSYLTNRICHTLGHYHKQKVQV-NR-N----NNIGNN 755 (821)
Q Consensus 695 ~~~~llv~----------~~~l~~G~~l~eel~~~p~~---~~l~~li~Rl~~DL~t~~~Ek~~G-~~-~----YmkE~~ 755 (821)
-...+-+. .+.++.|..+++++.++|.+ .++++.+.||+|||.+|++|+++| +. + ||++++
T Consensus 286 leEYl~~R~~sg~~p~~~l~e~~~g~~lp~~v~~~p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke~g 365 (433)
T 3v1v_A 286 VWEYLAMRQFNNFRPCPTITDTVGGYELPADLHARPDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVIAEREQ 365 (433)
T ss_dssp HHHHHHHHHHSSSTTTGGGHHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCCCCHHHHhCchHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHHHHhcC
Confidence 11111110 11122367789999998875 778889999999999999999985 45 3 898775
No 16
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=97.92 E-value=0.0028 Score=74.84 Aligned_cols=415 Identities=16% Similarity=0.163 Sum_probs=201.1
Q ss_pred CCcccchhhhhh-hhccccCCCCCCC-CChhHHHHHHhccCCCCCCCCC-CCCCchhhHhhhHHHHHHHHhhccCch--h
Q 003417 117 GEISVSAYDTAW-VALVEDIQGSGAP-QFPSSLHWIANSQLPDGSWGDH-LLFSAHDRLINTLACVVALRSWNIHHD--K 191 (821)
Q Consensus 117 g~~S~S~YDTAW-VAmvp~~~g~~~p-~Fp~~~~wil~nQ~~DGsWG~~-~~~~~~d~ll~TLA~vlAL~~w~~~~~--~ 191 (821)
|+.+..+.=||= |-+- ..-|...+ .-.+..+||.+.|++||+||.. ++. --+..|.=|-+||+-=+..++ +
T Consensus 34 ~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~yl~~~Q~~dGgW~~~~~~~---~~~~~t~~~y~aLrllg~~~~~~~ 109 (631)
T 2sqc_A 34 GPLLSNVTMEAEYVLLC-HILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGP---PDLDTTIEAYVALKYIGMSRDEEP 109 (631)
T ss_dssp CCEECCTHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHSCTTSCCCSSTTCC---CCHHHHHHHHHHHHHHTCCTTSHH
T ss_pred ccCCCcchhhHHHHHHH-HHhCCCCHHHHHHHHHHHHHhcCCCCCccCCCCCC---cchHHHHHHHHHHHhcCCCCChHH
Confidence 566555444443 4333 22232222 2356789999999999999954 211 147778888889987665544 7
Q ss_pred hhhHHHHHHHh--Hh----------------hhhccCCCCCCceEeEe-h--------------------hHHHHHHHhC
Q 003417 192 CHKGLLFFKEN--IS----------------KLENENDEHMPIGFEVA-F--------------------PSLLEIARSL 232 (821)
Q Consensus 192 i~~Gl~fl~~n--l~----------------~~~~~~~~~~~vgfeii-~--------------------P~Ll~~a~~l 232 (821)
+.||.++|.++ .. .|.+ ..++|+ |++ + |-.+=++++.
T Consensus 110 ~~~ar~~i~~~GG~~~~~~~~k~~La~~G~~~w~~--~~~~p~--e~~llp~~~p~~~~~~~~~~R~~~~P~~~l~~~r~ 185 (631)
T 2sqc_A 110 MQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEK--VPMVPP--EIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQP 185 (631)
T ss_dssp HHHHHHHHHHTTCGGGSCHHHHHHHHHTTSSCGGG--SCCCCG--GGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCcccCCHHHHHHHHHcCCCCccc--CCCCCH--HHHHcccccccCHhHhHHHHHHHHHhHHHHhhCCC
Confidence 99999999873 10 1211 123333 333 2 3333333332
Q ss_pred CCCCCCCChhhHHHHHHhhhhhcCCCCccccc---cc-h-------hHHHHHhcCCC--cc---hHH----HhhcccCCC
Q 003417 233 DIEVPYDSPVLQKIYDKRNLKLTRIPKDIMHN---VP-T-------TLLHSLEGMPD--LN---WQK----LLKLQCQDG 292 (821)
Q Consensus 233 gl~~p~~~~~l~~l~~~r~~kL~r~~~~~~~~---~p-~-------~llhslEgl~~--~d---~~~----v~~~~~~~G 292 (821)
-..+| .+..| .+|--.+.+.... .| + .+++.+|.+.. +. -++ +..-|..+|
T Consensus 186 ~~~~~----~~~~l-----~el~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~a~~~~~~~i~~~~~~~g 256 (631)
T 2sqc_A 186 VFPLP----ERARV-----PELYETDVPPRRRGAKGGGGWIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDG 256 (631)
T ss_dssp CCCCC----GGGCC-----GGGGCCSSCCCCCCCTTCCCHHHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHCCTTS
T ss_pred ccCCC----CCCCH-----HHhcCCCccccCccccccHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence 21111 00000 0111111111110 01 1 22333444332 10 011 223345678
Q ss_pred ccc-CCccHHHHHHhc---cC--chhHHHHHHHHHHHh-----cCC-CCCCCccChhHHHHHHHHHHHcCCCCCCHHHHH
Q 003417 293 SFL-FSPSSTAYALMQ---TK--DENCLKYLTKAVQRF-----NGG-VPNVYPVDIFEHLWAVDRLQRLGISRYFQPEIK 360 (821)
Q Consensus 293 S~~-~SPSaTAa~l~~---~~--d~~~l~YL~~~v~~~-----~g~-VP~~yP~d~fe~Lw~VD~LqRLGIs~~F~~EI~ 360 (821)
++. ..| +|...++. .+ ++...+.-...+.++ +|+ .+..++..+++..++|..|..+|.... .+.++
T Consensus 257 ~~~~i~p-~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dGg~~~~~~~s~vwdta~~l~AL~~~G~~~~-~~~~~ 334 (631)
T 2sqc_A 257 SWGGIQP-PWFYALIALKILDMTQHPAFIKGWEGLELYGVELDYGGWMFQASISPVWDTGLAVLALRAAGLPAD-HDRLV 334 (631)
T ss_dssp SSTTSHH-HHHHHHHHHHHTTCTTSHHHHHHHHGGGGGEEECTTSCEEECSSCCHHHHHHHHHHHHHHTTCCTT-CHHHH
T ss_pred CcccccH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHhceEEcCCCceeeCCCCChHHHHHHHHHHHHHcCCCCC-CHHHH
Confidence 765 346 44433321 12 333322222222222 223 333456678999999999999999753 56777
Q ss_pred HHHHHHHhhhhcc-c-----------ccccc---CCCCCChHHHHHHHHHHHHcCCcc---chhh-------hhccc-cC
Q 003417 361 ECLDYVYRYWTEE-G-----------ICWAR---NTRVQDLDDTSMGFRLLRLHGYDV---SAEA-------FEHFE-KG 414 (821)
Q Consensus 361 ~~Ld~i~~~~~~~-g-----------i~~~~---~~~~~DlddTAlaFrlLR~~Gy~V---S~dv-------f~~F~-~~ 414 (821)
..++.+-+.-.+. | -+|+- +...+|+++||.+.++|.+.|.+. ..+. +.... .+
T Consensus 335 ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~d 414 (631)
T 2sqc_A 335 KAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSN 414 (631)
T ss_dssp HHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCC
Confidence 7887775542111 1 01211 112368999999999999999743 1111 22233 56
Q ss_pred CceeeccCCc------------------cchHHHHHhHHhhhc-cCCCC-hhHHHHHHHHHHHHHHHHhhc--cchhhhh
Q 003417 415 GEFFCFVGQS------------------TQAVTGVYNLYRASQ-VLFPG-EKILGHAKQFSAKYLKAKTAA--DLLDKWI 472 (821)
Q Consensus 415 g~F~~~~~e~------------------~~dvs~~l~Ly~AS~-l~~~g-E~iL~eA~~fs~~~L~~~~~~--~~~Dkw~ 472 (821)
|.|..|.... .+++.....+..|.. +..+. +..+++|. +||.+.+.+ .+..+|.
T Consensus 415 Ggf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai----~~L~~~Q~~DGsw~g~wg 490 (631)
T 2sqc_A 415 GGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAV----EYLKREQKPDGSWFGRWG 490 (631)
T ss_dssp SCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHH----HHHHHHCCTTSCCCCSSB
T ss_pred CCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHHHHHHH----HHHHHhcCCCCCCCCCCC
Confidence 7775442211 144444445555532 22221 22344444 577766643 5555665
Q ss_pred hcC-CChhHHHHhcc---CccccccchhHHHHHHHHhcCCCcchhhhhh--c-----cCCCCCC-----HHHHHHHHhhh
Q 003417 473 IAK-DLPGEVAFAME---VPWYACLPRLETRLYIEQYGGEDDVWIGKTL--Y-----RMPYVNN-----DVYLELAKLDY 536 (821)
Q Consensus 473 ~s~-~l~~eV~~aL~---~P~~~~l~RleaR~yIe~Y~~~~~~wi~Kt~--Y-----rm~~v~n-----~~lLeLAklDF 536 (821)
+.. .....|-.+|. .+. .....-.+..||..-+..|+-| |.+. | .-...++ -.++-|....-
T Consensus 491 ~~~~y~Ta~~l~aL~~~g~~~-~~~~i~rav~~L~s~Q~~DGgW-g~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~ 568 (631)
T 2sqc_A 491 VNYLYGTGAVVSALKAVGIDT-REPYIQKALDWVEQHQNPDGGW-GEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGR 568 (631)
T ss_dssp SSHHHHHHHHHHHHHHTTCCT-TSHHHHHHHHHHHHTCCTTSCC-CCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCchHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHhCcCCCCc-CCccccccccccCCCCCCCHHHHHHHHHHHHHcCC
Confidence 321 11233444442 111 0111123567777766666677 4331 1 1001112 12444443322
Q ss_pred hhhhhchhhhHHHHHHHHHhcCCCc
Q 003417 537 NNCQAVHRTEWDSLQKWYAACKLDK 561 (821)
Q Consensus 537 n~~Qs~hq~El~~l~rWw~e~~l~~ 561 (821)
.....++...+|..+....+
T Consensus 569 -----~~~~~i~rav~wL~~~Q~~d 588 (631)
T 2sqc_A 569 -----AESEAARRGVQYLVETQRPD 588 (631)
T ss_dssp -----SSSHHHHHHHHHHHHHCCTT
T ss_pred -----CChHHHHHHHHHHHhccCCC
Confidence 24567888999999877643
No 17
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=97.84 E-value=0.00094 Score=80.22 Aligned_cols=102 Identities=17% Similarity=0.229 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHhccC--CC----CCcccchhhhh-hhhccccCCCCC--CCCChhHHHHHHhccCCCCCCCCCCCCCc
Q 003417 98 NEIKERVHAIKSMLGSM--ED----GEISVSAYDTA-WVALVEDIQGSG--APQFPSSLHWIANSQLPDGSWGDHLLFSA 168 (821)
Q Consensus 98 ~~~~~~~~~i~~~~~~~--~~----g~~S~S~YDTA-WVAmvp~~~g~~--~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~ 168 (821)
+...+.+++..+.+.++ .| |+.+..+..|| .|-+. .+.|.. .+.-.+.++||.+.|++||+||.... .
T Consensus 71 ~~~~~a~~~~~~~~~~~Q~~dG~W~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~yl~~~Q~~DGgWgl~~~--~ 147 (732)
T 1w6k_A 71 HTAFEGALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITC-HVARIPLPAGYREEIVRYLRSVQLPDGGWGLHIE--D 147 (732)
T ss_dssp CSHHHHHHHHHHHHHTTBCTTSCBCCCCCCBSSHHHHHHHHH-HHHTCCCCTTHHHHHHHHHHHHSCTTSCBCSBTT--S
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCccccccCchhhhHHHHHHH-HHhCCCCCHHHHHHHHHHHHHhcCCCCCccCCcC--C
Confidence 33444555555544443 23 56655555554 44332 111211 12346889999999999999995421 1
Q ss_pred hhhHhhhHHHHHHHHhhccCc--hhhhhHHHHHHHh
Q 003417 169 HDRLINTLACVVALRSWNIHH--DKCHKGLLFFKEN 202 (821)
Q Consensus 169 ~d~ll~TLA~vlAL~~w~~~~--~~i~~Gl~fl~~n 202 (821)
.-.+..|.-+.+||+-=+..+ .++.||.+||.++
T Consensus 148 ~s~~~~T~~~Y~aLrl~G~~~~~~~~~~ar~~i~~~ 183 (732)
T 1w6k_A 148 KSTVFGTALNYVSLRILGVGPDDPDLVRARNILHKK 183 (732)
T ss_dssp CCBHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHc
Confidence 125778888899999866544 4699999999873
No 18
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=97.51 E-value=0.0011 Score=72.23 Aligned_cols=215 Identities=16% Similarity=0.168 Sum_probs=123.9
Q ss_pred ChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccC-chhhhhHHHHHHHhHhhhhccCCCCCCceEeEe
Q 003417 143 FPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIH-HDKCHKGLLFFKENISKLENENDEHMPIGFEVA 221 (821)
Q Consensus 143 Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~-~~~i~~Gl~fl~~nl~~~~~~~~~~~~vgfeii 221 (821)
-.++++||+.-|++|||||...+. .-.+..|.+||.+|..-+-- .-.++|+++||.+.-. - +. ||.-.
T Consensus 68 r~~~i~~l~s~Q~~dGGF~g~~g~--~~~l~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~-~-DG-------sf~~~ 136 (331)
T 3dss_B 68 KEEILVFIKSCQHECGGVSASIGH--DPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQK-E-DG-------SFAGD 136 (331)
T ss_dssp HHHHHHHHHHTBCTTSCBBSSTTS--CBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBC-T-TS-------CBBSS
T ss_pred HHHHHHHHhhhcCCCCCcCCCCCC--CccHHHHHHHHHHHHHcCCccHHHHHHHHHHHhccCC-C-CC-------CEecc
Confidence 578999999999999999964321 12599999999999874321 2247899999987321 1 10 22100
Q ss_pred hhHHHHHHHhCC-CCCCCCChhhHHHHHHhhhhhcCCCCccccccc-hhHHHHHhcCCCcchHHHhhcccCCCcccCCcc
Q 003417 222 FPSLLEIARSLD-IEVPYDSPVLQKIYDKRNLKLTRIPKDIMHNVP-TTLLHSLEGMPDLNWQKLLKLQCQDGSFLFSPS 299 (821)
Q Consensus 222 ~P~Ll~~a~~lg-l~~p~~~~~l~~l~~~r~~kL~r~~~~~~~~~p-~~llhslEgl~~~d~~~v~~~~~~~GS~~~SPS 299 (821)
| -| .++-+-.-++..+.- |.+. ...+ ..+ ++| |+..|..||.+..+|.
T Consensus 137 -~--------~ge~d~~~ty~Al~~L~l-----lg~~-----~~~~~~k~---------v~~--L~s~Q~~dGGfg~~pg 186 (331)
T 3dss_B 137 -I--------WGEIDTRFSFCAVATLAL-----LGKL-----DAINVEKA---------IEF--VLSCMNFDGGFGCRPG 186 (331)
T ss_dssp -T--------TCCBCHHHHHHHHHHHHH-----HTCG-----GGSCHHHH---------HHH--HHTTBCTTSCBCSSTT
T ss_pred -c--------CCCCchHHHHHHHHHHHh-----cCCC-----CHHHHHHH---------HHH--HHHhCcCCCCcCCCCC
Confidence 0 01 000000001111110 1110 0000 001 122 3445778999998873
Q ss_pred ------HHHHHHh---ccC------chhHHHHHHHHHHHh--cCCCCCCCccChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 003417 300 ------STAYALM---QTK------DENCLKYLTKAVQRF--NGGVPNVYPVDIFEHLWAVDRLQRLGISRYFQPEIKEC 362 (821)
Q Consensus 300 ------aTAa~l~---~~~------d~~~l~YL~~~v~~~--~g~VP~~yP~d~fe~Lw~VD~LqRLGIs~~F~~EI~~~ 362 (821)
.|++++. ..+ -+++.+||.+..... .++.|+-. .|..-.-|.+..|.-+|-... ..++.+
T Consensus 187 ~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~-~D~cys~w~l~~L~llg~~~~--~~~~~~ 263 (331)
T 3dss_B 187 SESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKL-PDVCYSWWVLASLKIIGRLHW--IDREKL 263 (331)
T ss_dssp CCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCC-CCHHHHHHHHHHHHHTTCGGG--SCHHHH
T ss_pred CCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCC-CcchhHHHHHHHHHHcCCcch--hhHHHH
Confidence 3444322 111 246777777664332 23467654 467667899999999985432 245678
Q ss_pred HHHHHhhhhc--cccccccCCCCCChHHHHHHHHHHHHcCCc
Q 003417 363 LDYVYRYWTE--EGICWARNTRVQDLDDTSMGFRLLRLHGYD 402 (821)
Q Consensus 363 Ld~i~~~~~~--~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~ 402 (821)
.++|.++-.. .|.+..++. .+|+..|..+.-.|...|++
T Consensus 264 ~~fil~cQ~~~~GGf~~~pg~-~~d~~hT~~~l~~Ls~~g~~ 304 (331)
T 3dss_B 264 RSFILACQDEETGGFADRPGD-MVDPFHTLFGIAGLSLLGEE 304 (331)
T ss_dssp HHHHHHTBCTTTCCBCSSTTS-CCBHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHhcCCCCCCcCCCCCC-CCCHHHHHHHHHHHHHcCCC
Confidence 8888776432 334433443 48999999999999999974
No 19
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=96.77 E-value=0.013 Score=66.09 Aligned_cols=101 Identities=19% Similarity=0.171 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHhccCCCCCcccchhh---hhh-hhccccCCCC-CCCCChhHHHHHHhccCCCCCCCCCCCCCchhhHh
Q 003417 99 EIKERVHAIKSMLGSMEDGEISVSAYD---TAW-VALVEDIQGS-GAPQFPSSLHWIANSQLPDGSWGDHLLFSAHDRLI 173 (821)
Q Consensus 99 ~~~~~~~~i~~~~~~~~~g~~S~S~YD---TAW-VAmvp~~~g~-~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll 173 (821)
..+..++-+.+++.....|.-+--+.+ +-| |...--++.. ..+.--.+++||+..|.+||||+....-. --+.
T Consensus 74 ~~~~hi~~l~~~lq~~~gg~~a~D~~r~~l~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~~--~~i~ 151 (437)
T 2h6f_B 74 QREKHFHYLKRGLRQLTDAYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQY--PHLA 151 (437)
T ss_dssp CHHHHHHHHHHHTTEECGGGGGGTTCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCC--BCHH
T ss_pred cHHHHHHHHHHcCCCCCCCcccccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCCC--cchh
Confidence 456788888888755433332211111 112 1111112211 11223568999999999999998742111 2478
Q ss_pred hhHHHHHHHHhhccC----chhhhhHHHHHHH
Q 003417 174 NTLACVVALRSWNIH----HDKCHKGLLFFKE 201 (821)
Q Consensus 174 ~TLA~vlAL~~w~~~----~~~i~~Gl~fl~~ 201 (821)
.|.+||.||..-+.. ...++|+++||.+
T Consensus 152 ~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s 183 (437)
T 2h6f_B 152 PTYAAVNALCIIGTEEAYDIINREKLLQYLYS 183 (437)
T ss_dssp HHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCcccccchHHHHHHHHHHH
Confidence 999999999875532 2357899999886
No 20
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=96.22 E-value=0.072 Score=63.94 Aligned_cols=90 Identities=11% Similarity=0.231 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCccC-hhHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHHhhhhccccccccC------
Q 003417 311 ENCLKYLTKAVQRFNGGVPNVYPVD-IFEHLWAVDRLQRLGISRYFQ---PEIKECLDYVYRYWTEEGICWARN------ 380 (821)
Q Consensus 311 ~~~l~YL~~~v~~~~g~VP~~yP~d-~fe~Lw~VD~LqRLGIs~~F~---~EI~~~Ld~i~~~~~~~gi~~~~~------ 380 (821)
.++++||.+..+ .+|+....+.+. .+...+++..|..+|..+.-. +.|+..++.+-+.-.++| +|+..
T Consensus 561 ~rAv~yL~~~Q~-~DGsW~g~wg~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DG-GWge~~~s~~~ 638 (732)
T 1w6k_A 561 TQGLEFCRRQQR-ADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADG-GWGEDFESCEE 638 (732)
T ss_dssp HHHHHHHHHHSC-TTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTS-CCCBCTHHHHH
T ss_pred HHHHHHHHhhcC-CCCCccCcCCCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCC-CCCCCCccccc
Confidence 367888887653 345544334333 466778899999999875332 678888888876544444 33321
Q ss_pred -----CCCCChHHHHHHHHHHHHcCCc
Q 003417 381 -----TRVQDLDDTSMGFRLLRLHGYD 402 (821)
Q Consensus 381 -----~~~~DlddTAlaFrlLR~~Gy~ 402 (821)
....|+..||-|+..|...|+.
T Consensus 639 ~~y~~~~~s~v~~TAwALlALl~ag~~ 665 (732)
T 1w6k_A 639 RRYVQSAQSQIHNTCWAMMGLMAVRHP 665 (732)
T ss_dssp TSCCBCSSCCHHHHHHHHHHHHHTTCS
T ss_pred cccCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 1135788899999888887765
No 21
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=95.79 E-value=0.02 Score=60.32 Aligned_cols=85 Identities=16% Similarity=0.256 Sum_probs=55.9
Q ss_pred ccchhhhhhhhcc----ccCCCCCCCCChhHHHHHH-hccCCCCCCCCCCCCCc-----------hhhHhhhHHHHHHHH
Q 003417 120 SVSAYDTAWVALV----EDIQGSGAPQFPSSLHWIA-NSQLPDGSWGDHLLFSA-----------HDRLINTLACVVALR 183 (821)
Q Consensus 120 S~S~YDTAWVAmv----p~~~g~~~p~Fp~~~~wil-~nQ~~DGsWG~~~~~~~-----------~d~ll~TLA~vlAL~ 183 (821)
.+|++.||.|..+ ..........--++++||+ +.|.+||||........ -+++.-|.-++.||.
T Consensus 64 ~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~ 143 (277)
T 1qqf_A 64 PPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQ 143 (277)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHH
Confidence 4789999997664 2111212223447899999 59999999986643211 123444777888887
Q ss_pred hh------ccC--chhhhhHHHHHHHhHh
Q 003417 184 SW------NIH--HDKCHKGLLFFKENIS 204 (821)
Q Consensus 184 ~w------~~~--~~~i~~Gl~fl~~nl~ 204 (821)
.- .+. +..|+||++||.++..
T Consensus 144 ~~~~~~~~~~~~~~~~i~~A~~~L~~~~~ 172 (277)
T 1qqf_A 144 EARDICEGQVNSLPGSINKAGEYLEASYL 172 (277)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHHHHHT
T ss_pred hhhhccccCCCchHHHHHHHHHHHHHHhc
Confidence 65 221 3478999999998753
No 22
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=95.54 E-value=0.023 Score=62.47 Aligned_cols=84 Identities=21% Similarity=0.273 Sum_probs=57.2
Q ss_pred ccchhhhhhhhcc----ccCCCCCCCCChhHHHHHHhccCCCCCCCCCCCCCc----------hhhHhhhHHHHHHHHhh
Q 003417 120 SVSAYDTAWVALV----EDIQGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSA----------HDRLINTLACVVALRSW 185 (821)
Q Consensus 120 S~S~YDTAWVAmv----p~~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~----------~d~ll~TLA~vlAL~~w 185 (821)
.++.|.||.|..+ ...-....+..-++++||++.|.+||+|+....... .+.+.-|.-+++||..-
T Consensus 117 ~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~ 196 (367)
T 1hzf_A 117 DSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHG 196 (367)
T ss_dssp CCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccccCCCCCCcccccchHHHHHHHHhh
Confidence 4788999997643 111122234567789999999999999987632111 13467788889999763
Q ss_pred cc-------------CchhhhhHHHHHHHhH
Q 003417 186 NI-------------HHDKCHKGLLFFKENI 203 (821)
Q Consensus 186 ~~-------------~~~~i~~Gl~fl~~nl 203 (821)
.. .+..|+||+.||.+++
T Consensus 197 g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~ 227 (367)
T 1hzf_A 197 LAVFQDEGAEPLKQRVEASISKASSFLGEKA 227 (367)
T ss_dssp HTTCCTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccchhhhhhHHHHHHHHHHHHHhh
Confidence 31 1236899999998874
No 23
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=95.30 E-value=0.036 Score=59.33 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=56.0
Q ss_pred ccchhhhhhhhcc----ccCCCCCCCCChhHHHHHHh-ccCCCCCCCCCCCCCc-----------hhhHhhhHHHHHHHH
Q 003417 120 SVSAYDTAWVALV----EDIQGSGAPQFPSSLHWIAN-SQLPDGSWGDHLLFSA-----------HDRLINTLACVVALR 183 (821)
Q Consensus 120 S~S~YDTAWVAmv----p~~~g~~~p~Fp~~~~wil~-nQ~~DGsWG~~~~~~~-----------~d~ll~TLA~vlAL~ 183 (821)
.+|++.||.|..+ ..........--++++||+. .|.+||||.+...... -.++.-|.-++.||.
T Consensus 80 ~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~ 159 (310)
T 2wy7_A 80 APSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQ 159 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHH
Confidence 4789999997664 21112222234578999994 9999999986542211 123444888888887
Q ss_pred hhc------cC--chhhhhHHHHHHHhHh
Q 003417 184 SWN------IH--HDKCHKGLLFFKENIS 204 (821)
Q Consensus 184 ~w~------~~--~~~i~~Gl~fl~~nl~ 204 (821)
.-. +. +..|+||++||.++..
T Consensus 160 ~~~~~~~~~~~~~~~~i~~A~~~L~~~~~ 188 (310)
T 2wy7_A 160 EAKDICEEQVNSLPGSITKAGDFLEANYM 188 (310)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHHHHGG
T ss_pred hcccccccCCcchHHHHHHHHHHHHHHhh
Confidence 652 21 3468999999998654
No 24
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=94.61 E-value=0.5 Score=52.23 Aligned_cols=256 Identities=15% Similarity=0.147 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHhccCCCCCcccchhhhhhhhcccc-------CCCCCCCCChhHHHHHHhccC---------CCCCCCCC
Q 003417 100 IKERVHAIKSMLGSMEDGEISVSAYDTAWVALVED-------IQGSGAPQFPSSLHWIANSQL---------PDGSWGDH 163 (821)
Q Consensus 100 ~~~~~~~i~~~~~~~~~g~~S~S~YDTAWVAmvp~-------~~g~~~p~Fp~~~~wil~nQ~---------~DGsWG~~ 163 (821)
.+.-++-+++.+..+..+ -..-|+.++.++=+ ++....---...++||+.-|. +||+||..
T Consensus 22 ~~~H~~y~~~~l~~lp~~---~~~~d~~r~~~~yw~l~~L~lLg~l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~ 98 (377)
T 1n4q_B 22 RDRHVRFFQRCLQVLPER---YSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGS 98 (377)
T ss_dssp HHHHHHHHHHHHHEECGG---GGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEECSS
T ss_pred HHHHHHHHHHHhhcCCcc---ccccccchHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCCccccccCCCCCccCCC
Confidence 455666677766544322 12245555444322 221011114678999999998 68999864
Q ss_pred CC----C---------Cc--hhhHhhhHHHHHHHHhhccCc--hhhhhHHHHHHHhHhhhhccCCCCCCceEeEehhHHH
Q 003417 164 LL----F---------SA--HDRLINTLACVVALRSWNIHH--DKCHKGLLFFKENISKLENENDEHMPIGFEVAFPSLL 226 (821)
Q Consensus 164 ~~----~---------~~--~d~ll~TLA~vlAL~~w~~~~--~~i~~Gl~fl~~nl~~~~~~~~~~~~vgfeii~P~Ll 226 (821)
.. + .. .-.+.+|.+||.+|..-+..- -..+++++||++. +.-...- ..++.|
T Consensus 99 ~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~~~~fL~~~-Q~~DGSf-~g~~~w--------- 167 (377)
T 1n4q_B 99 SYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRAL-QLEDGSF-CAVPEG--------- 167 (377)
T ss_dssp STTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHH-BCTTSCB-CSSTTC---------
T ss_pred cccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHh-cCCCCCe-eeccCC---------
Confidence 31 1 11 136999999999998754222 2457889999862 1110000 001111
Q ss_pred HHHHhCCCCCCCCChhhHHHHHHhhhhhcCCCCccccccchhHHHHHhcCCCcchHH----HhhcccCCCcccCCcc---
Q 003417 227 EIARSLDIEVPYDSPVLQKIYDKRNLKLTRIPKDIMHNVPTTLLHSLEGMPDLNWQK----LLKLQCQDGSFLFSPS--- 299 (821)
Q Consensus 227 ~~a~~lgl~~p~~~~~l~~l~~~r~~kL~r~~~~~~~~~p~~llhslEgl~~~d~~~----v~~~~~~~GS~~~SPS--- 299 (821)
|- ..+...+.. ...++.|-.+..++-++ |+.-|..||.++.+|-
T Consensus 168 ------Ge------~DirftY~A-----------------l~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ES 218 (377)
T 1n4q_B 168 ------SE------NDMRFVYCA-----------------SCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLES 218 (377)
T ss_dssp ------CC------CBHHHHHHH-----------------HHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCB
T ss_pred ------Cc------chhHHHHHH-----------------HHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Confidence 10 001000000 00000000000012222 4456788999999883
Q ss_pred ---HHHHHH-----hccCc--------hhHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 003417 300 ---STAYAL-----MQTKD--------ENCLKYLTKAVQRFNGGVPNVYPVDIFEHLWAVDRLQRLGISRYFQPEIKECL 363 (821)
Q Consensus 300 ---aTAa~l-----~~~~d--------~~~l~YL~~~v~~~~g~VP~~yP~d~fe~Lw~VD~LqRLGIs~~F~~EI~~~L 363 (821)
.|++++ +...+ ++..++|-+-..-...|-|+- +.|.--.-|+..+|.=||-...+.. +.+.
T Consensus 219 h~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ~gGf~GR~nK-~~D~CYSfWv~~~l~iL~~~~~~d~--~~l~ 295 (377)
T 1n4q_B 219 HGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNK-PVDTCYSFWVGATLKLLKIFQYTNF--EKNR 295 (377)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTBSSSBCSSTTS-CCCTTHHHHHHHHHHHTTCGGGSCH--HHHH
T ss_pred chhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcCCCCcCCCCCc-chhHHHHHHHHHHHHHhCCccccCH--HHHH
Confidence 444332 22111 233444433321112345654 5688888899999999986543332 4566
Q ss_pred HHHHhhhhc-c-ccccccCCCCCChHHHHHHHHHHHHcCCc
Q 003417 364 DYVYRYWTE-E-GICWARNTRVQDLDDTSMGFRLLRLHGYD 402 (821)
Q Consensus 364 d~i~~~~~~-~-gi~~~~~~~~~DlddTAlaFrlLR~~Gy~ 402 (821)
++|..+-.. . |+.-.++. .+|++.|..++..|.+.|++
T Consensus 296 ~fil~cQ~~~~GGf~~~p~~-~~D~~HT~~~LagLsl~~~~ 335 (377)
T 1n4q_B 296 NYILSTQDRLVGGFAKWPDS-HPDALHAYFGICGLSLMEES 335 (377)
T ss_dssp HHHHTTBCTTTCSBCSSTTS-CCBHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHcCCCCCCcCCCCCC-CCCHHHHHHHHHHHHhcCCC
Confidence 677664222 2 23323333 57999999999999999863
No 25
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=93.50 E-value=0.12 Score=66.49 Aligned_cols=88 Identities=14% Similarity=0.182 Sum_probs=62.9
Q ss_pred ccchhhhhhhhcc----ccCCCCCCCCChhHHHHHHhccCCCCCCCCCCCCCc-------hhhHhhhHHHHHHHHhhccC
Q 003417 120 SVSAYDTAWVALV----EDIQGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSA-------HDRLINTLACVVALRSWNIH 188 (821)
Q Consensus 120 S~S~YDTAWVAmv----p~~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~-------~d~ll~TLA~vlAL~~w~~~ 188 (821)
.+|.+-||+|..+ ........+..-++++||+++|.+||+|...+.... -+.+--|.-++.||..-+..
T Consensus 1013 ~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~ 1092 (1451)
T 4acq_A 1013 QGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLT 1092 (1451)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCC
T ss_pred CCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCC
Confidence 4789999997654 221123345677889999999999999985432110 13566799999999875532
Q ss_pred --chhhhhHHHHHHHhHhhhh
Q 003417 189 --HDKCHKGLLFFKENISKLE 207 (821)
Q Consensus 189 --~~~i~~Gl~fl~~nl~~~~ 207 (821)
+..|+||+.||++++..+.
T Consensus 1093 ~~~~~i~~A~~~L~~~~~~~~ 1113 (1451)
T 4acq_A 1093 VTHPVVRNALFCLESAWKTAQ 1113 (1451)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhhhhcc
Confidence 3569999999999887764
No 26
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=93.41 E-value=0.097 Score=59.04 Aligned_cols=73 Identities=18% Similarity=0.044 Sum_probs=47.9
Q ss_pred hhhhhccccCCCCCCCCChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhcc-CchhhhhHHHHHHH
Q 003417 126 TAWVALVEDIQGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNI-HHDKCHKGLLFFKE 201 (821)
Q Consensus 126 TAWVAmvp~~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~-~~~~i~~Gl~fl~~ 201 (821)
+||.++. .++....+....+++||++.|.+||+||...+-.. -...|.-||.||.--+. +...++|+++||-+
T Consensus 206 ~A~~~L~-llg~~~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eS--h~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~ 279 (437)
T 2h6f_B 206 CAASVAS-LTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEA--HGGYTFCGLAALVILKRERSLNLKSLLQWVTS 279 (437)
T ss_dssp HHHHHHH-HTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCC--CHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHH
T ss_pred HHHHHHH-HhCCCChHHHHHHHHHHHHccCCCCCcCCCCCCCC--CccHHHHHHHHHHHcCCCCcccHHHHHHHHHh
Confidence 3454432 23333346678899999999999999996432111 35778888888876432 22357888888764
No 27
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=93.25 E-value=0.12 Score=56.14 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhccCCCCCcccc------hhhhhh--hhccccCCCCCCCCChhHHHHHHhccCCCCCCCCCCCCCchhh
Q 003417 100 IKERVHAIKSMLGSMEDGEISVS------AYDTAW--VALVEDIQGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSAHDR 171 (821)
Q Consensus 100 ~~~~~~~i~~~~~~~~~g~~S~S------~YDTAW--VAmvp~~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ 171 (821)
++..++-|+++-. .||..+.+ ++=|.| .++. -++....+.....++||+..|.+||+||...+-.. -
T Consensus 116 ~~k~~~fL~~~Q~--~DGsf~~~~~ge~d~~~ty~Al~~L~-llg~~~~~~~~k~v~~L~s~Q~~dGGfg~~pg~es--h 190 (331)
T 3dss_B 116 VDKVVAYVQSLQK--EDGSFAGDIWGEIDTRFSFCAVATLA-LLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSES--H 190 (331)
T ss_dssp HHHHHHHHHHTBC--TTSCBBSSTTCCBCHHHHHHHHHHHH-HHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCC--C
T ss_pred HHHHHHHHhccCC--CCCCEecccCCCCchHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhCcCCCCcCCCCCCCC--c
Confidence 4556666665432 45655544 444544 2221 12222335578899999999999999996532111 2
Q ss_pred HhhhHHHHHHHHhhcc-CchhhhhHHHHHHH
Q 003417 172 LINTLACVVALRSWNI-HHDKCHKGLLFFKE 201 (821)
Q Consensus 172 ll~TLA~vlAL~~w~~-~~~~i~~Gl~fl~~ 201 (821)
...|..||.||.--+. +...++|+++||.+
T Consensus 191 ~~~T~~al~aL~llg~~~~~~~~~~~~wL~~ 221 (331)
T 3dss_B 191 AGQIYCCTGFLAITSQLHQVNSDLLGWWLCE 221 (331)
T ss_dssp HHHHHHHHHHHHHTTCGGGSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHH
Confidence 5688888888875432 12347788888765
No 28
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=92.72 E-value=0.11 Score=61.26 Aligned_cols=79 Identities=24% Similarity=0.223 Sum_probs=53.7
Q ss_pred cchhhhhhhhcc-ccCCC-CCCCCChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccC--chhhhhHH
Q 003417 121 VSAYDTAWVALV-EDIQG-SGAPQFPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIH--HDKCHKGL 196 (821)
Q Consensus 121 ~S~YDTAWVAmv-p~~~g-~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~--~~~i~~Gl 196 (821)
|++.+||+|.+. -.... ...+.-..+++||+..|.+||||.+.-+ .+-+-.|..|+.||...... ...++||+
T Consensus 444 ~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~wg---~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav 520 (631)
T 2sqc_A 444 PSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG---VNYLYGTGAVVSALKAVGIDTREPYIQKAL 520 (631)
T ss_dssp CBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB---SSHHHHHHHHHHHHHHTTCCTTSHHHHHHH
T ss_pred CCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCCC---CCchHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 567799996554 22211 1123345789999999999999943311 12355788999999876542 35789999
Q ss_pred HHHHHh
Q 003417 197 LFFKEN 202 (821)
Q Consensus 197 ~fl~~n 202 (821)
+||.+.
T Consensus 521 ~~L~s~ 526 (631)
T 2sqc_A 521 DWVEQH 526 (631)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999873
No 29
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=90.06 E-value=2.9 Score=46.04 Aligned_cols=183 Identities=8% Similarity=-0.071 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHhcCC---Cc------CC---cchhhHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhhhhhhccCCCc
Q 003417 545 TEWDSLQKWYAACKL---DK------FG---ITRRALLLAYFVASASIYEPARWQERIAWAKTAVLVETITSYFDKQKDS 612 (821)
Q Consensus 545 ~El~~l~rWw~e~~l---~~------l~---faR~r~ve~Yf~aaa~~fEPe~s~~Ri~~aK~~~L~tviDD~fD~ygts 612 (821)
+|-.+--+|..+.|. .+ |. =..++.+..=.|.++..|.---.+.....++..+++.++||.+|..
T Consensus 30 e~r~~~l~w~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~t~~~laar~YP~a~~e~l~liad~~~~~F~lDD~~d~~--- 106 (374)
T 1yyq_A 30 EERIENLHYAYNKAAHHFAQPRQQQLLKVDPKRLQASLQTIVGMVVYSWAKVSKECMADLSIHYTYTLVLDDSKDDP--- 106 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHSCCCHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHTTCCSCS---
T ss_pred HHHHHHHHHHHHhccchhcccccccccccCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhcccccCc---
Confidence 334445588888771 00 11 1223444444554444443333445567899999999999999853
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccCCCchhhHhHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHhhCCC-
Q 003417 613 CKQRRAFVREFRNCISAWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLTTWQDDGN- 691 (821)
Q Consensus 613 ~eEl~~f~~~f~~~~~~wD~~~~~~lp~~~~~k~~f~~aL~~t~nei~~~~~~~~g~~i~~~L~~~W~~l~~~W~~eg~- 691 (821)
.+++..|.+.+-+. . |.. .-+. .++-+...+ +...-|......+.+.|.+++.....|..
T Consensus 107 ~~~l~~~~~~ll~G---------~--~~~---~Pl~-~al~dl~~r----l~~~~~p~~~~rf~~s~~~~~~a~~~Ea~n 167 (374)
T 1yyq_A 107 YPTMVNYFDDLQAG---------R--EQA---HPWW-ALVNEHFPN----VLRHFGPFCSLNLIRSTLDFFEGCWIEQYN 167 (374)
T ss_dssp HHHHTTHHHHHHHT---------C--CCS---SHHH-HHHHHHHHH----HHTTSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcC---------C--CCC---ChHH-HHHHHHHHH----HHHhcCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777776654320 0 111 1122 333444333 33333444455677777777774322211
Q ss_pred ---cccch-HHHHHHHHHhc----cCcccchhh----cCChhHHHHHHH---HHHHhhhhhhhHHHHh-hcccc
Q 003417 692 ---SHWGV-AELLVQTINLS----AGRLLSEEL----LCHPEYARLSYL---TNRICHTLGHYHKQKV-QVNRN 749 (821)
Q Consensus 692 ---~~~~~-~~llv~~~~l~----~G~~l~eel----~~~p~~~~l~~l---i~Rl~~DL~t~~~Ek~-~G~~~ 749 (821)
.|+.. ..........+ ++-.+++.+ ...|.+..+... +.-.+|||-||.+|.. .|+..
T Consensus 168 ~~~~p~~~~Y~~~rR~~sG~~E~~~~~~~P~~~~~e~~~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~ 241 (374)
T 1yyq_A 168 FGGFPGSHDYPQFLRRMNGLGHCVGASLWPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQI 241 (374)
T ss_dssp CCCCTTCTTHHHHHHHHHHCHHHHHHTTCCTTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred cCCCCCHHHHHHHHHhhccHHHHHHHhhccccccchhhcchhHHHHHHHHHHHHHhhhhhhccchhhhccCCcc
Confidence 12111 11111111110 011122221 123545444443 4446899999999997 47653
No 30
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=89.79 E-value=0.64 Score=57.12 Aligned_cols=87 Identities=17% Similarity=0.213 Sum_probs=55.9
Q ss_pred cccchhhhhhhhcccc----CCCCCCCCChhHHHHHH-hccCCCCCCCCCCCCCc-----------hhhHhhhHHHHHHH
Q 003417 119 ISVSAYDTAWVALVED----IQGSGAPQFPSSLHWIA-NSQLPDGSWGDHLLFSA-----------HDRLINTLACVVAL 182 (821)
Q Consensus 119 ~S~S~YDTAWVAmvp~----~~g~~~p~Fp~~~~wil-~nQ~~DGsWG~~~~~~~-----------~d~ll~TLA~vlAL 182 (821)
..+|.|.||.|+.+=. .........-++++||. +.|.+||+|........ -+.+--|.-++.||
T Consensus 324 ~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL 403 (915)
T 2hr0_B 324 RAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISL 403 (915)
T ss_dssp SCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHH
T ss_pred CCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHH
Confidence 3579999999876411 11122234567889999 59999999975432100 12344456678888
Q ss_pred Hhhcc--------CchhhhhHHHHHHHhHhh
Q 003417 183 RSWNI--------HHDKCHKGLLFFKENISK 205 (821)
Q Consensus 183 ~~w~~--------~~~~i~~Gl~fl~~nl~~ 205 (821)
..-.. ....|.+|++||.+++..
T Consensus 404 ~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~ 434 (915)
T 2hr0_B 404 QEAKDICEEQVNSLPGSITKAGDFLEANYMN 434 (915)
T ss_dssp HHHTTTSTTTCTTHHHHHHHHHHHHHHHGGG
T ss_pred HhcccccccCcccchHHHHHHHHHHHHhhhc
Confidence 76521 123688999999987654
No 31
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=84.47 E-value=1.6 Score=48.11 Aligned_cols=97 Identities=8% Similarity=0.012 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhccCCCCCcccc-------hhhhhh-hhccccCCCCCCCCChhHHHHHHhccCCCCCCCCCCCCCchhhH
Q 003417 101 KERVHAIKSMLGSMEDGEISVS-------AYDTAW-VALVEDIQGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSAHDRL 172 (821)
Q Consensus 101 ~~~~~~i~~~~~~~~~g~~S~S-------~YDTAW-VAmvp~~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~l 172 (821)
+..++-++++-. .||....+ +|=|-- ++...-++....+.-..+++||+.-|..||+||...+-.. -.
T Consensus 145 ~~~~~fL~~~Q~--~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ES--h~ 220 (377)
T 1n4q_B 145 EACLAGLRALQL--EDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLES--HG 220 (377)
T ss_dssp HHHHHHHHHHBC--TTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCB--CH
T ss_pred HHHHHHHHHhcC--CCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCC--ch
Confidence 455666666533 45655443 222222 1111123333456678999999999999999996532222 24
Q ss_pred hhhHHHHHHHHhhccCc-h----hhhhHHHHHHH
Q 003417 173 INTLACVVALRSWNIHH-D----KCHKGLLFFKE 201 (821)
Q Consensus 173 l~TLA~vlAL~~w~~~~-~----~i~~Gl~fl~~ 201 (821)
..|--||.||.-=+..+ . .++|++++|.+
T Consensus 221 g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~ 254 (377)
T 1n4q_B 221 GSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIM 254 (377)
T ss_dssp HHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhcCcccccchhhHHHHHHHHHh
Confidence 55655665554322111 1 56778777754
No 32
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=82.96 E-value=1.2 Score=48.69 Aligned_cols=56 Identities=14% Similarity=0.079 Sum_probs=38.7
Q ss_pred hhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhc----cCchhhhhHHHHHHH
Q 003417 144 PSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWN----IHHDKCHKGLLFFKE 201 (821)
Q Consensus 144 p~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~----~~~~~i~~Gl~fl~~ 201 (821)
-+.++||+.-|++|||||.-+.. .-+.-+ |.-|+.+|.... +.+..++||+.||.+
T Consensus 94 ~~g~~~ll~~Q~~dGgf~~~~~~-~~~~~l-Ta~v~~~l~~a~~~~~v~~~~i~~a~~~L~~ 153 (367)
T 1hzf_A 94 QKGYMRIQQFRKADGSYAAWLSR-DSSTWL-TAFVLKVLSLAQEQVGGSPEKLQETSNWLLS 153 (367)
T ss_dssp HHHHHHHHTTBCTTSCBCSSTTS-CCCHHH-HHHHHHHHHHHGGGTCCCHHHHHHHHHHHGG
T ss_pred HHHHHHHHhccCCCCCeeccCCC-CCcHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45689999999999999843211 112222 777777776543 345689999999976
No 33
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=81.97 E-value=0.77 Score=49.69 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=36.1
Q ss_pred ChhHHHHHHhccCCCCCCCCC--C--------CCCchhhHhhhHHHHHHHHhhc-----------------cCchhhhhH
Q 003417 143 FPSSLHWIANSQLPDGSWGDH--L--------LFSAHDRLINTLACVVALRSWN-----------------IHHDKCHKG 195 (821)
Q Consensus 143 Fp~~~~wil~nQ~~DGsWG~~--~--------~~~~~d~ll~TLA~vlAL~~w~-----------------~~~~~i~~G 195 (821)
+-.+++|||.-|.+||+|+.- . +|.. |. |.-||..|..-. ....+++||
T Consensus 99 i~Rgl~wlL~mQ~~nGGWpqFdpd~~~Yl~~IpFnD-Dv---tarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rg 174 (332)
T 1gxm_A 99 VRKAANFLVNSQYSTGALPQFYPLKGGYSDHATFND-NG---MAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKG 174 (332)
T ss_dssp HHHHHHHHHHHCCTTSCCBSEESCCSGGGGSEECGG-GH---HHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCccccCCCcccccccCCcch-HH---HHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHH
Confidence 567899999999999999842 1 1211 23 444445444431 112468999
Q ss_pred HHHHHH
Q 003417 196 LLFFKE 201 (821)
Q Consensus 196 l~fl~~ 201 (821)
+.||.+
T Consensus 175 id~Llk 180 (332)
T 1gxm_A 175 TDYILK 180 (332)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999986
No 34
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=81.23 E-value=1.6 Score=50.00 Aligned_cols=100 Identities=17% Similarity=0.089 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHhccCCCCCcccchhhhhhhhcccc----C--CCCCC-C-CChhHHHHHHhccCCCCCCCCCCCCCchh
Q 003417 99 EIKERVHAIKSMLGSMEDGEISVSAYDTAWVALVED----I--QGSGA-P-QFPSSLHWIANSQLPDGSWGDHLLFSAHD 170 (821)
Q Consensus 99 ~~~~~~~~i~~~~~~~~~g~~S~S~YDTAWVAmvp~----~--~g~~~-p-~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d 170 (821)
..+.-+.-+++.|..+.... ...|+.+..|+=| + =|..- + .--++++||+.-|.+||++|.....-..-
T Consensus 62 ~~~~Hi~yl~~~L~~LP~~y---~~~Dasr~wl~Yw~l~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~ 138 (520)
T 3q7a_B 62 RKQEHTQFLASSFFQLPGKF---VSLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIP 138 (520)
T ss_dssp CHHHHHHHHHHHHSCBCGGG---GGGGGGHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTTSCC
T ss_pred CHHHHHHHHHHHhhhCChhh---hhcccchHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Confidence 34566777777775443222 2367766555433 1 12111 1 13468999999999999998653101122
Q ss_pred hHhhhHHHHHHHHhhccC-----ch--h--hhhHHHHHHH
Q 003417 171 RLINTLACVVALRSWNIH-----HD--K--CHKGLLFFKE 201 (821)
Q Consensus 171 ~ll~TLA~vlAL~~w~~~-----~~--~--i~~Gl~fl~~ 201 (821)
-|.+|.|||.+|..-... -+ . ++++++||.+
T Consensus 139 hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~s 178 (520)
T 3q7a_B 139 HLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMR 178 (520)
T ss_dssp CHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHH
Confidence 499999999999876542 11 2 6688899886
No 35
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=79.14 E-value=2.5 Score=44.07 Aligned_cols=55 Identities=5% Similarity=-0.129 Sum_probs=38.8
Q ss_pred hHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhc----cCchhhhhHHHHHHH
Q 003417 145 SSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWN----IHHDKCHKGLLFFKE 201 (821)
Q Consensus 145 ~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~----~~~~~i~~Gl~fl~~ 201 (821)
+.++|++.-|++|||||.-+.-.. ...=|.-++.+|.... +.++.|+||+.||..
T Consensus 42 ~g~~~~l~~q~~dGgf~~f~~~~~--s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~ 100 (277)
T 1qqf_A 42 KGYTQQLAFKQPISAYAAFNNRPP--STWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLIL 100 (277)
T ss_dssp HHHHHHHTTBCTTSCBCSSTTSCC--CHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCccccCCCCc--cHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 458889999999999984321111 1233788888887653 345689999999985
No 36
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=77.71 E-value=2.8 Score=44.48 Aligned_cols=55 Identities=7% Similarity=-0.058 Sum_probs=39.0
Q ss_pred hHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhc----cCchhhhhHHHHHHH
Q 003417 145 SSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWN----IHHDKCHKGLLFFKE 201 (821)
Q Consensus 145 ~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~----~~~~~i~~Gl~fl~~ 201 (821)
+.++|++.-|++|||||.-+.-. - ...=|.-++.+|.... +.++.++||+.||..
T Consensus 58 ~g~~~~l~~q~~dGgf~~f~~~~-~-s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~ 116 (310)
T 2wy7_A 58 KGYTQQLAFRQPSSAFAAFVKRA-P-STWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLIL 116 (310)
T ss_dssp HHHHHHHTTBCTTSCBCSSTTSC-C-CHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcccCCCCC-c-cHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 45889999999999998432111 1 1233788888887654 345689999999985
No 37
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=74.97 E-value=1.9 Score=47.86 Aligned_cols=20 Identities=25% Similarity=0.695 Sum_probs=17.7
Q ss_pred ChhHHHHHHhccCCCCCCCC
Q 003417 143 FPSSLHWIANSQLPDGSWGD 162 (821)
Q Consensus 143 Fp~~~~wil~nQ~~DGsWG~ 162 (821)
+-.+++|||.-|.+||+|+.
T Consensus 177 i~Rgl~wlL~mQ~~nGGWpq 196 (408)
T 1r76_A 177 ALKGIEYLLASQFPNGGWPQ 196 (408)
T ss_dssp HHHHHHHHHHHSCTTSCCBS
T ss_pred HHHHHHHHHHccCCCCCCcC
Confidence 45789999999999999984
No 38
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=73.19 E-value=2.9 Score=47.88 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=36.5
Q ss_pred hhHHHHHHhccCCCCCCCCC-CCCCchhhHhhhHHHHHHHHhhcc-CchhhhhHHHHHHH
Q 003417 144 PSSLHWIANSQLPDGSWGDH-LLFSAHDRLINTLACVVALRSWNI-HHDKCHKGLLFFKE 201 (821)
Q Consensus 144 p~~~~wil~nQ~~DGsWG~~-~~~~~~d~ll~TLA~vlAL~~w~~-~~~~i~~Gl~fl~~ 201 (821)
..+++||...|.+||||... .+-. -+--|-.++.+|.--+. .+..++|++.||.+
T Consensus 170 ~k~v~fL~slQ~~DGSF~g~~wGe~---Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~s 226 (520)
T 3q7a_B 170 QSIYEFFMRCKRPDGGFVVCEGGEV---DVRGTYCLLVVATLLDIITPELLHNVDKFVSA 226 (520)
T ss_dssp HHHHHHHHHHBCTTSCBBSSTTCCB---CHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCEecCCCCCc---hHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 46899999999999999753 2211 13344444444433332 35679999999986
No 39
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=71.66 E-value=6.2 Score=50.32 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=52.2
Q ss_pred cccchhhhhhhhcc----ccCCC-CCCCCChhHHHHHHhccCCCCCCCCCCCCCc-------hhhHhhhHHHHHHHHhhc
Q 003417 119 ISVSAYDTAWVALV----EDIQG-SGAPQFPSSLHWIANSQLPDGSWGDHLLFSA-------HDRLINTLACVVALRSWN 186 (821)
Q Consensus 119 ~S~S~YDTAWVAmv----p~~~g-~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~-------~d~ll~TLA~vlAL~~w~ 186 (821)
..+|.|=||.|..+ ..... ......-++++||.+.|.+||+|-+...... -+++.=|+-++.||..-+
T Consensus 897 ~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g 976 (1325)
T 2pn5_A 897 TNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLEND 976 (1325)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCH
T ss_pred CCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhhCc
Confidence 46789999996654 11211 1223456789999999999999965421110 023433544455776432
Q ss_pred -c---CchhhhhHHHHHHHhHh
Q 003417 187 -I---HHDKCHKGLLFFKENIS 204 (821)
Q Consensus 187 -~---~~~~i~~Gl~fl~~nl~ 204 (821)
. ....|+||++||.++..
T Consensus 977 ~~~~~~~~~i~~a~~~L~~~~~ 998 (1325)
T 2pn5_A 977 IAKAKHAEVIQKGMTYLSNQFG 998 (1325)
T ss_dssp HHHHHTHHHHHHHHHHHHHHGG
T ss_pred ccccccHHHHHHHHHHHHHhhc
Confidence 1 12468899999998654
No 40
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=57.17 E-value=25 Score=41.99 Aligned_cols=102 Identities=20% Similarity=0.221 Sum_probs=60.1
Q ss_pred HHHHHHHHhccC-CC------CCcccchhhhhhhhcc----ccCCCCCCCCChhHHHHHHhccCCCCCCCCCCC------
Q 003417 103 RVHAIKSMLGSM-ED------GEISVSAYDTAWVALV----EDIQGSGAPQFPSSLHWIANSQLPDGSWGDHLL------ 165 (821)
Q Consensus 103 ~~~~i~~~~~~~-~~------g~~S~S~YDTAWVAmv----p~~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~------ 165 (821)
+..-+.+++.-- .| |....|.|=||.|+.+ ..........--+.+.||+.+|.+||+|-..+.
T Consensus 370 l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~ 449 (767)
T 4fxk_B 370 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM 449 (767)
T ss_dssp HHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCC
T ss_pred HHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhcccchhcchhcchhh
Confidence 444555555432 23 3456799999998654 222111112234678999999999999975421
Q ss_pred ---CC-chhhHhhhHHHHHHHHhhc-cC------------chhhhhHHHHHHHhHh
Q 003417 166 ---FS-AHDRLINTLACVVALRSWN-IH------------HDKCHKGLLFFKENIS 204 (821)
Q Consensus 166 ---~~-~~d~ll~TLA~vlAL~~w~-~~------------~~~i~~Gl~fl~~nl~ 204 (821)
.. .-+.+.-|.=.++||..-. .. ...|.|++.||.++..
T Consensus 450 ~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~ 505 (767)
T 4fxk_B 450 QGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKAS 505 (767)
T ss_dssp CSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhh
Confidence 11 1234555666677886522 11 1247889999987653
No 41
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=52.29 E-value=21 Score=46.56 Aligned_cols=87 Identities=18% Similarity=0.227 Sum_probs=53.6
Q ss_pred cccchhhhhhhhcc----ccCCCCCCCCChhHHHHHH-hccCCCCCCCCCCCCCc------h-h----hHhhhHHHHHHH
Q 003417 119 ISVSAYDTAWVALV----EDIQGSGAPQFPSSLHWIA-NSQLPDGSWGDHLLFSA------H-D----RLINTLACVVAL 182 (821)
Q Consensus 119 ~S~S~YDTAWVAmv----p~~~g~~~p~Fp~~~~wil-~nQ~~DGsWG~~~~~~~------~-d----~ll~TLA~vlAL 182 (821)
.+.|.|=||.|+.+ ...........-++++||. +.|.+||+|...+.... . + .+.-|.=++.||
T Consensus 1071 ~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL 1150 (1661)
T 2b39_A 1071 RPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLIAL 1150 (1661)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHH
T ss_pred CCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCccccccCccccHHHHHHHH
Confidence 36799999998764 2222222334567889999 59999999975421000 0 0 233344467788
Q ss_pred Hhhcc--------CchhhhhHHHHHHHhHhh
Q 003417 183 RSWNI--------HHDKCHKGLLFFKENISK 205 (821)
Q Consensus 183 ~~w~~--------~~~~i~~Gl~fl~~nl~~ 205 (821)
..-.- ....|.++++||.+++..
T Consensus 1151 ~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~ 1181 (1661)
T 2b39_A 1151 HEAKDICEAQVNSLGRSIAKAGDFLENHYRE 1181 (1661)
T ss_dssp HHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT
T ss_pred HhccccccccCcchhHHHHHHHHHHHHhhhc
Confidence 76421 123688999999887644
No 42
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=52.08 E-value=14 Score=47.01 Aligned_cols=56 Identities=14% Similarity=0.101 Sum_probs=39.2
Q ss_pred hHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhc-----cCchhhhhHHHHHHHh
Q 003417 145 SSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWN-----IHHDKCHKGLLFFKEN 202 (821)
Q Consensus 145 ~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~-----~~~~~i~~Gl~fl~~n 202 (821)
+.++||+.-|++|||||.-.+... ...-|+.++-+|.... +.+..+++|+.||.+.
T Consensus 876 ~g~~rll~~q~~dGgf~~f~~~~~--s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~ 936 (1325)
T 2pn5_A 876 QGYQNQMRYRQTDGSFGLWETTNG--SVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASK 936 (1325)
T ss_dssp HHHHHHGGGBCTTSCBCSSSSSCC--CHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCCeeccCCCCC--CeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhh
Confidence 456688999999999984322111 2333888888887742 4456789999999764
No 43
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=48.02 E-value=7.7 Score=47.54 Aligned_cols=52 Identities=17% Similarity=0.358 Sum_probs=34.4
Q ss_pred chhhhhhhhccc-cCCCCCCCCChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHh
Q 003417 122 SAYDTAWVALVE-DIQGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRS 184 (821)
Q Consensus 122 S~YDTAWVAmvp-~~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~ 184 (821)
.+..|||+.|.= ..+. . ..-...++||+++|.+||+|+.. .| |.-|+.||..
T Consensus 481 ~ve~TayaLlall~~~~-~-~~~~~~v~wL~~qq~~~Ggw~ST-----Qd----T~~Al~AL~~ 533 (915)
T 2hr0_B 481 NVEATSYALLALLQLKD-F-DFVPPVVRWLNEQRYYGGGYGST-----QA----TFMVFQALAQ 533 (915)
T ss_dssp HHHHHHHHHHHHHHTTC-T-TTHHHHHHHHHTCCCSSSSCCSH-----HH----HHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCC-h-hhHHHHHHHHHhcccCCCCccch-----hh----HHHHHHHHHH
Confidence 466789954431 1222 1 22456789999999999999843 34 6677777755
No 44
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=46.64 E-value=9.1 Score=42.52 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=37.8
Q ss_pred CCChhHHHHHHhccCC-CCCCC---CCCCCCch---------hhHhhh---HHHHHHHHhhccCch----hhhhHHHHHH
Q 003417 141 PQFPSSLHWIANSQLP-DGSWG---DHLLFSAH---------DRLINT---LACVVALRSWNIHHD----KCHKGLLFFK 200 (821)
Q Consensus 141 p~Fp~~~~wil~nQ~~-DGsWG---~~~~~~~~---------d~ll~T---LA~vlAL~~w~~~~~----~i~~Gl~fl~ 200 (821)
+..-..++||+..|-+ ||+|- ....+-+. +.-+++ ...|+.|..-..... +|++|+++|.
T Consensus 245 ~av~Rgi~~Ll~~Qe~~dGsw~rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~WL~ 324 (408)
T 1r76_A 245 EATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWLN 324 (408)
T ss_dssp HHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcccchhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 4566789999999999 99984 21111111 112333 334455666544322 6999999998
Q ss_pred H
Q 003417 201 E 201 (821)
Q Consensus 201 ~ 201 (821)
+
T Consensus 325 s 325 (408)
T 1r76_A 325 T 325 (408)
T ss_dssp H
T ss_pred H
Confidence 7
No 45
>1vhf_A Periplasmic divalent cation tolerance protein; structural genomics, unknown function; 1.54A {Thermotoga maritima} SCOP: d.58.5.2
Probab=43.24 E-value=9.8 Score=34.82 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=46.2
Q ss_pred ccccchhccchhhhhhhhhhccchhhHHHHHHHHHHHhccCCCCCcccchhhhhhhhccccCCCCCCCCChhHHHHHHhc
Q 003417 74 VIKWKEIVEDDIEEDRIESKVCASNEIKERVHAIKSMLGSMEDGEISVSAYDTAWVALVEDIQGSGAPQFPSSLHWIANS 153 (821)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~S~S~YDTAWVAmvp~~~g~~~p~Fp~~~~wil~n 153 (821)
+-.|+.-++++.|---. +| +.....+++.+.||++.. ||+-=+-.+|-.+| .|.-++||.++
T Consensus 40 ~Y~W~G~ie~~~E~~l~-iK-T~~~~~~~l~~~I~~~Hp-----------YevPeIi~lpi~~g-----~~~Yl~Wi~~~ 101 (113)
T 1vhf_A 40 GYWWKGEIVQDKEWAAI-FK-TTEEKEKELYEELRKLHP-----------YETPAIFTLKVENV-----LTEYMNWLRES 101 (113)
T ss_dssp EEEETTEEEEEEEEEEE-EE-EEGGGHHHHHHHHHHHCS-----------SSSCCEEEEECSCC-----CHHHHHHHHHH
T ss_pred EEEECCEeeeCeEEEEE-EE-ECHHHHHHHHHHHHHHCC-----------CcCCEEEEEEccCC-----CHHHHHHHHHH
Confidence 44676666666554422 22 346788999999998854 99977666776677 89999999999
Q ss_pred cCCCCCC
Q 003417 154 QLPDGSW 160 (821)
Q Consensus 154 Q~~DGsW 160 (821)
-.+|||=
T Consensus 102 t~~~~~~ 108 (113)
T 1vhf_A 102 VLEGGSH 108 (113)
T ss_dssp C------
T ss_pred cCCCCcc
Confidence 9999974
No 46
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=43.15 E-value=29 Score=45.33 Aligned_cols=88 Identities=23% Similarity=0.203 Sum_probs=54.3
Q ss_pred Ccccchhhhhhhhcc----ccCCCCCCCCChhHHHHHHh-ccCCCCCCCCCCCCCc------hh------hHhhhHHHHH
Q 003417 118 EISVSAYDTAWVALV----EDIQGSGAPQFPSSLHWIAN-SQLPDGSWGDHLLFSA------HD------RLINTLACVV 180 (821)
Q Consensus 118 ~~S~S~YDTAWVAmv----p~~~g~~~p~Fp~~~~wil~-nQ~~DGsWG~~~~~~~------~d------~ll~TLA~vl 180 (821)
..+.|.|=||.|+.+ ........-..-++++||.+ .|.+||+|...+.... .+ .+.-|.=++.
T Consensus 1071 ~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~ 1150 (1676)
T 3cu7_A 1071 GGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVI 1150 (1676)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcCCcccccccCccccHHHHHH
Confidence 346799999998764 22222223345678899999 8999999975432100 01 2323444567
Q ss_pred HHHhhcc------CchhhhhHHHHHHHhHhh
Q 003417 181 ALRSWNI------HHDKCHKGLLFFKENISK 205 (821)
Q Consensus 181 AL~~w~~------~~~~i~~Gl~fl~~nl~~ 205 (821)
||..-.- ....+.++++||.+++..
T Consensus 1151 aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~ 1181 (1676)
T 3cu7_A 1151 GIRKAFDICPLVKIDTALIKADNFLLENTLP 1181 (1676)
T ss_dssp HHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHhcccccCCcccHHHHHHHHHHHHHhhhc
Confidence 7765321 123678999999887644
No 47
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=34.18 E-value=38 Score=37.49 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=40.6
Q ss_pred hhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccC--ch-hhhhHHHHHHHhHhh
Q 003417 144 PSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIH--HD-KCHKGLLFFKENISK 205 (821)
Q Consensus 144 p~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~--~~-~i~~Gl~fl~~nl~~ 205 (821)
.+.+++|+..|.+||++|+ +-||--+|-||..-... .. .|.+++.+|.+++..
T Consensus 186 ~~~~~~l~~~q~~dG~fGn---------~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~q~~~ 241 (399)
T 2pmv_A 186 KDIVEKISMKIKDNGIIGD---------IYSTGLAMQALSVTPEPSKKEWNCKKTTDMILNEIKQ 241 (399)
T ss_dssp HHHHHHHTTSBCTTSCBSS---------HHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCCCcccc---------cccHHHHHHHHHhcCCCccccccHHHHHHHHHHHhhC
Confidence 4567788888999999984 67899999999875432 12 689999999985433
No 48
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=33.77 E-value=8.7 Score=50.12 Aligned_cols=87 Identities=20% Similarity=0.257 Sum_probs=0.0
Q ss_pred ccchhhhhhhhcccc----CCC-CCCCCChhHHHHHHh-ccCCCCCCCCCCCC---------Cc-hhhHhhhHHHHHHHH
Q 003417 120 SVSAYDTAWVALVED----IQG-SGAPQFPSSLHWIAN-SQLPDGSWGDHLLF---------SA-HDRLINTLACVVALR 183 (821)
Q Consensus 120 S~S~YDTAWVAmvp~----~~g-~~~p~Fp~~~~wil~-nQ~~DGsWG~~~~~---------~~-~d~ll~TLA~vlAL~ 183 (821)
.+|.+=||.|+.+=. ... ......-+.++||+. +|.+||+|...+.. .. -+.+.=|.=+++||.
T Consensus 1056 ~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~ 1135 (1642)
T 3prx_B 1056 ASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQGAEEEVYLTAFILVALL 1135 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhccCCccCCCCcccchHHHHHHHH
Confidence 478899999876521 111 334456789999997 79999999755311 00 123555666788887
Q ss_pred hhcc--------CchhhhhHHHHHHHhHhhh
Q 003417 184 SWNI--------HHDKCHKGLLFFKENISKL 206 (821)
Q Consensus 184 ~w~~--------~~~~i~~Gl~fl~~nl~~~ 206 (821)
.-.. .+..|+||+.||++++..+
T Consensus 1136 e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~~ 1166 (1642)
T 3prx_B 1136 ESKTICNDYVNSLDSSIKKATNYLLKKYEKL 1166 (1642)
T ss_dssp -------------------------------
T ss_pred hcccccccccccchHHHHHHHHHHHHhhhcC
Confidence 6421 1347899999999887655
No 49
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=31.94 E-value=39 Score=43.62 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=37.5
Q ss_pred hHHHHHHhccCCCCCCCCCCC---CCchhhHhhhHHHHHHHHh----hccCchhhhhHHHHHHHh
Q 003417 145 SSLHWIANSQLPDGSWGDHLL---FSAHDRLINTLACVVALRS----WNIHHDKCHKGLLFFKEN 202 (821)
Q Consensus 145 ~~~~wil~nQ~~DGsWG~~~~---~~~~d~ll~TLA~vlAL~~----w~~~~~~i~~Gl~fl~~n 202 (821)
+.++|++.-|++|||||.-+. ...-+.- =|.-++-+|.. ..+.+..+.+|+.||..+
T Consensus 987 ~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~w-lTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~ 1050 (1451)
T 4acq_A 987 TGYQRQLNYKHYDGSYSTFGERYGRNQGNTW-LTAFVLKTFAQARAYIFIDEAHITQALIWLSQR 1050 (1451)
T ss_dssp HHHHHHGGGBCTTSCBCSSTTGGGCCCCCHH-HHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCCCCeeeccCCCCCCCCchh-HHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhh
Confidence 568999999999999883210 0011122 26666666654 234567899999999874
No 50
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=31.00 E-value=23 Score=39.36 Aligned_cols=75 Identities=12% Similarity=0.154 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhcc--CCCCCcccchhhhhh--hhccccCCCCCC--CCChhHHHHHHhccCCCCCCCCCCCCCchh
Q 003417 97 SNEIKERVHAIKSMLGS--MEDGEISVSAYDTAW--VALVEDIQGSGA--PQFPSSLHWIANSQLPDGSWGDHLLFSAHD 170 (821)
Q Consensus 97 ~~~~~~~~~~i~~~~~~--~~~g~~S~S~YDTAW--VAmvp~~~g~~~--p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d 170 (821)
...+..-++.+++-+.+ ..||-+. .+|=||+ =||.-....... |.-+..++||+. |.+||+++.+
T Consensus 201 ~~~i~~al~~l~~~l~~~Q~~dG~FG-N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~np------- 271 (414)
T 2bb6_A 201 RNRINLALKRVQEKILKAQTPEGYFG-NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQNP------- 271 (414)
T ss_dssp HHHHHHHHHHHHHHHHHTBCTTSCBS-STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCCSH-------
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcc-chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCCCh-------
Q ss_pred hHhhhHHHHHHH
Q 003417 171 RLINTLACVVAL 182 (821)
Q Consensus 171 ~ll~TLA~vlAL 182 (821)
..|.-.+.||
T Consensus 272 --~ataQ~lpaL 281 (414)
T 2bb6_A 272 --LMISQLLPVL 281 (414)
T ss_dssp --HHHHHHHHHT
T ss_pred --HHHHHHHHHh
No 51
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=29.70 E-value=34 Score=36.92 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=37.7
Q ss_pred hHHHHHHhccCCCCCCCCCCCC------------CchhhHhhhHHHHHHHHhhccC------chhhhhHHHHHHH
Q 003417 145 SSLHWIANSQLPDGSWGDHLLF------------SAHDRLINTLACVVALRSWNIH------HDKCHKGLLFFKE 201 (821)
Q Consensus 145 ~~~~wil~nQ~~DGsWG~~~~~------------~~~d~ll~TLA~vlAL~~w~~~------~~~i~~Gl~fl~~ 201 (821)
+.-+-||..|+++|+|.-.-.+ .++| -=.|...+.+|.+-... .++|.||+.||-.
T Consensus 35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~D-nddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~ 108 (332)
T 1gxm_A 35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTID-NGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVN 108 (332)
T ss_dssp GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECG-GGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCcc-CccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 3478899999999999853111 1111 23488889999874321 2468999999875
No 52
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=28.47 E-value=54 Score=36.26 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHhcc-C-CCCCcccchhhhhhh--hcccc-CCCCCCCCChhHHHHHHhccCCCCCCCCCCCCCchhhHh
Q 003417 99 EIKERVHAIKSMLGS-M-EDGEISVSAYDTAWV--ALVED-IQGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSAHDRLI 173 (821)
Q Consensus 99 ~~~~~~~~i~~~~~~-~-~~g~~S~S~YDTAWV--Amvp~-~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll 173 (821)
+|...++++++-+.+ - .+|.+ ..+|=||=+ ||.-. ......|-.+..++||+. |.+||+|+.+ .
T Consensus 180 ~i~~ai~~~~~~l~~~q~~dG~f-Gn~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~np---------~ 248 (399)
T 2pmv_A 180 LFGQVLKDIVEKISMKIKDNGII-GDIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFHNP---------M 248 (399)
T ss_dssp HHHHHHHHHHHHHTTSBCTTSCB-SSHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTCSH---------H
T ss_pred HHHHHHHHHHHHHHHhhcCCCcc-cccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcCCH---------H
Confidence 355566666554433 3 35766 489999983 33222 224557899999999999 9999999743 5
Q ss_pred hhHHHHHHHHh
Q 003417 174 NTLACVVALRS 184 (821)
Q Consensus 174 ~TLA~vlAL~~ 184 (821)
.|.-.+.||..
T Consensus 249 ~taQilPaL~~ 259 (399)
T 2pmv_A 249 SIAQILPSLKG 259 (399)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcC
Confidence 66677777764
No 53
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=26.82 E-value=68 Score=38.54 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=54.5
Q ss_pred ChhHHHH--HHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccCchhhhhHHHHHHHhHhhhhccCCCCCCceEeE
Q 003417 143 FPSSLHW--IANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIHHDKCHKGLLFFKENISKLENENDEHMPIGFEV 220 (821)
Q Consensus 143 Fp~~~~w--il~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~~~~i~~Gl~fl~~nl~~~~~~~~~~~~vgfei 220 (821)
|+..++| ++..|..|||=+.. =.+|.|++..- + -+++++||+.-+.+..+.++..-|+.. +
T Consensus 185 ~~~~~d~~~~~~~~~~~GS~~~S--------PsaTAa~l~~~-----~---d~~~~~YL~~~~~~~~g~VP~~yP~d~-~ 247 (764)
T 3p5p_A 185 LEEVIDWNKIMRFQSKDGSFLSS--------PASTACVLMNT-----G---DEKCFTFLNNLLDKFGGCVPCMYSIDL-L 247 (764)
T ss_dssp SGGGCCTTGGGGGBCTTSCBTTB--------HHHHHHHHHHH-----C---CHHHHHHHHHHHHHHTSCCCSSCCCHH-H
T ss_pred ccccccHHHHHhccCCCCCcccC--------hHHHHHHHHhC-----C---ChhHHHHHHHHHHhcCCCCCCcCCCcH-H
Confidence 6778899 99999999997754 24677777652 1 268899999988887665655555531 2
Q ss_pred ehhHHHHHHHhCCCCC
Q 003417 221 AFPSLLEIARSLDIEV 236 (821)
Q Consensus 221 i~P~Ll~~a~~lgl~~ 236 (821)
--=.|++-+++|||+-
T Consensus 248 e~l~lID~LqrLGi~~ 263 (764)
T 3p5p_A 248 ERLSLVDNIEHLGIGR 263 (764)
T ss_dssp HHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHcCCcc
Confidence 2235677888999864
No 54
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=26.26 E-value=66 Score=38.90 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=53.8
Q ss_pred ChhHHHH--HHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccCchhhhhHHHHHHHhHhhhhccCCCCCCceEeE
Q 003417 143 FPSSLHW--IANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIHHDKCHKGLLFFKENISKLENENDEHMPIGFEV 220 (821)
Q Consensus 143 Fp~~~~w--il~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~~~~i~~Gl~fl~~nl~~~~~~~~~~~~vgfei 220 (821)
|+..++| |+..|..|||=+.. =.+|.|++..- ++ +++++||+.-+.+..+.++..-|+.. +
T Consensus 237 l~~~~d~~~~~~~q~~~GS~~~S--------PsaTAa~l~~~-----~d---~~~~~YL~~~~~~~~g~VP~~yP~d~-~ 299 (817)
T 3sdr_A 237 IQDIVEWERIMEVQSQDGSFLSS--------PASTACVFMHT-----GD---AKCLEFLNSVMIKFGNFVPCLYPVDL-L 299 (817)
T ss_dssp CTTTCCTTTGGGGCCTTSCBTTB--------HHHHHHHHHHH-----CC---HHHHHHHHHHHHHHSSCCCSSSCCHH-H
T ss_pred ccccccHHHHHhccCCCCCcccC--------HHHHHHHHHhC-----CC---hhHHHHHHHHHHhcCCCCCccCCCcH-H
Confidence 5777888 99999999997754 24677766642 11 68899999988887665655555531 2
Q ss_pred ehhHHHHHHHhCCCCC
Q 003417 221 AFPSLLEIARSLDIEV 236 (821)
Q Consensus 221 i~P~Ll~~a~~lgl~~ 236 (821)
--=.|++-+++|||+-
T Consensus 300 e~l~lID~LqrLGi~~ 315 (817)
T 3sdr_A 300 ERLLIVDNIVRLGIYR 315 (817)
T ss_dssp HHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHcCCcc
Confidence 2235678888999864
No 55
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=21.94 E-value=1.7e+02 Score=35.24 Aligned_cols=77 Identities=23% Similarity=0.296 Sum_probs=52.0
Q ss_pred ChhHHHH--HHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccCchhhhhHHHHHHHhHhhhhccCCCCCCceEeE
Q 003417 143 FPSSLHW--IANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIHHDKCHKGLLFFKENISKLENENDEHMPIGFEV 220 (821)
Q Consensus 143 Fp~~~~w--il~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~~~~i~~Gl~fl~~nl~~~~~~~~~~~~vgfei 220 (821)
|+..++| |+..|.+|||=+.. =.+|.|++.. +|+ +++++||+.-+.+..+.++..-|+.. +
T Consensus 209 l~~~~d~~~v~~~q~~~GS~~~S--------PsaTAa~l~~--~~d------~~~~~YL~~~~~~~~g~VP~~yP~d~-~ 271 (785)
T 3s9v_A 209 LQEIVDWQKIMKLQSKDGSFLSS--------PASTAAVFMR--TGN------KKCLDFLNFVLKKFGNHVPCHYPLDL-F 271 (785)
T ss_dssp CTTTCCHHHHHTTCCTTSCBTTB--------HHHHHHHHHH--HCC------HHHHHHHHHHHHHHSSCCCSSCCCHH-H
T ss_pred ccccccHHHHHhccCCCCCcccC--------HHHHHHHHHh--CCC------hhHHHHHHHHHHhcCCCCCCcCCCcH-H
Confidence 4555555 56999999997754 2468777764 454 68899999988887665555555531 2
Q ss_pred ehhHHHHHHHhCCCCC
Q 003417 221 AFPSLLEIARSLDIEV 236 (821)
Q Consensus 221 i~P~Ll~~a~~lgl~~ 236 (821)
--=.|++-+++|||+-
T Consensus 272 e~l~lID~LqrLGi~~ 287 (785)
T 3s9v_A 272 ERLWAVDTVERLGIDR 287 (785)
T ss_dssp HHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHcCCcc
Confidence 2335677788999864
No 56
>2nuh_A Periplasmic divalent cation tolerance protein; CUTA, unknown function; 1.39A {Xylella fastidiosa}
Probab=20.50 E-value=39 Score=31.07 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=47.1
Q ss_pred ccccchhccchhhhhhhhhhccchhhHHHHHHHHHHHhccCCCCCcccchhhhhhhhccccCCCCCCCCChhHHHHHHhc
Q 003417 74 VIKWKEIVEDDIEEDRIESKVCASNEIKERVHAIKSMLGSMEDGEISVSAYDTAWVALVEDIQGSGAPQFPSSLHWIANS 153 (821)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~S~S~YDTAWVAmvp~~~g~~~p~Fp~~~~wil~n 153 (821)
+-.|+.-++++.|---. +| +.....+++.++||++.- ||+-=+-.+|-.+| .|.-++||.++
T Consensus 43 ~Y~W~G~ie~~~E~~l~-iK-T~~~~~~~l~~~I~~~Hp-----------YevPeIi~lpi~~g-----~~~Yl~Wi~~~ 104 (118)
T 2nuh_A 43 TYRWQGKIETTQEIQLL-IK-TNAVHVNAAITRLCALHP-----------YRLPEAIAVQVSVG-----LPEYLTWINTE 104 (118)
T ss_dssp EEESSSSEEEEEEEEEE-EE-EEGGGHHHHHHHHHHHCS-----------SSSCCCEEEECCCC-----CHHHHHHHHHH
T ss_pred EEEECCEeeeCeEEEEE-EE-ECHHHHHHHHHHHHHHCC-----------CcCCEEEEEEccCC-----CHHHHHHHHHH
Confidence 44676666666554422 22 346788999999998854 99987766776667 89999999999
Q ss_pred cCCCCCC
Q 003417 154 QLPDGSW 160 (821)
Q Consensus 154 Q~~DGsW 160 (821)
-..+|+-
T Consensus 105 t~~~~~~ 111 (118)
T 2nuh_A 105 IDEEYSL 111 (118)
T ss_dssp HC-----
T ss_pred cCCCCCC
Confidence 8877764
Done!