BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003418
         (821 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet
 pdb|2H21|B Chain B, Structure Of Rubisco Lsmt Bound To Adomet
 pdb|2H21|C Chain C, Structure Of Rubisco Lsmt Bound To Adomet
 pdb|2H23|A Chain A, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
           Adohcy
 pdb|2H23|B Chain B, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
           Adohcy
 pdb|2H23|C Chain C, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
           Adohcy
 pdb|2H2E|A Chain A, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
 pdb|2H2E|B Chain B, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
 pdb|2H2E|C Chain C, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
 pdb|2H2J|A Chain A, Structure Of Rubisco Lsmt Bound To Sinefungin And
           Monomethyllysine
 pdb|2H2J|B Chain B, Structure Of Rubisco Lsmt Bound To Sinefungin And
           Monomethyllysine
 pdb|2H2J|C Chain C, Structure Of Rubisco Lsmt Bound To Sinefungin And
           Monomethyllysine
          Length = 440

 Score = 30.0 bits (66), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 637 AIETAVAQGKLNIKQIRELKEASVDLDNMISESLREN--LFKKTVDEIFSSGTGEFDAEE 694
           A ++A+A     I+Q RELKE ++D    I+  +RE   +  + +D IF     E D  E
Sbjct: 355 ACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLE 414

Query: 695 VYEK 698
            Y++
Sbjct: 415 YYQE 418


>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein
           Methyltransferase
 pdb|1MLV|B Chain B, Structure And Catalytic Mechanism Of A Set Domain Protein
           Methyltransferase
 pdb|1MLV|C Chain C, Structure And Catalytic Mechanism Of A Set Domain Protein
           Methyltransferase
 pdb|1OZV|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
           Lysine And Adohcy
 pdb|1OZV|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
           Lysine And Adohcy
 pdb|1OZV|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
           Lysine And Adohcy
 pdb|1P0Y|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
           Melysine And Adohcy
 pdb|1P0Y|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
           Melysine And Adohcy
 pdb|1P0Y|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
           Melysine And Adohcy
          Length = 444

 Score = 30.0 bits (66), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 637 AIETAVAQGKLNIKQIRELKEASVDLDNMISESLREN--LFKKTVDEIFSSGTGEFDAEE 694
           A ++A+A     I+Q RELKE ++D    I+  +RE   +  + +D IF     E D  E
Sbjct: 359 ACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLE 418

Query: 695 VYEK 698
            Y++
Sbjct: 419 YYQE 422


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,563,083
Number of Sequences: 62578
Number of extensions: 791841
Number of successful extensions: 2385
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2385
Number of HSP's gapped (non-prelim): 6
length of query: 821
length of database: 14,973,337
effective HSP length: 107
effective length of query: 714
effective length of database: 8,277,491
effective search space: 5910128574
effective search space used: 5910128574
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)