BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003418
(821 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LPR9|TI110_ARATH Protein TIC110, chloroplastic OS=Arabidopsis thaliana GN=TIC110 PE=1
SV=1
Length = 1016
Score = 1268 bits (3280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 620/823 (75%), Positives = 730/823 (88%), Gaps = 5/823 (0%)
Query: 2 FVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDM 61
+VTSVLP G+ L+GDEV KIV+FK ALGID+PDAAAMH+EIGRR+FRQRLE G+R+GD
Sbjct: 196 YVTSVLPTEGQSLKGDEVAKIVKFKNALGIDEPDAAAMHMEIGRRIFRQRLETGEREGDA 255
Query: 62 EQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRD 121
EQR AF +L+YVS LVFG+ASSFLLPWKRV KVTD+QVEIAIR+NAK+LYA +LK VGRD
Sbjct: 256 EQRRAFMRLVYVSALVFGDASSFLLPWKRVLKVTDAQVEIAIRENAKQLYAERLKLVGRD 315
Query: 122 VDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVV 181
++ E++V LR+ QLS++LSD LAEDLFREHTRK+V ENI +ALSILKSRTR K +A VV
Sbjct: 316 INVENLVDLRKSQLSFKLSDELAEDLFREHTRKVVVENISSALSILKSRTRAAKSLASVV 375
Query: 182 EELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSL 241
EEL+KVL FNNLL+SL+ H AD+FARGVGP+SL+G E D +R+MDDLKLLYRAYVTD+L
Sbjct: 376 EELEKVLEFNNLLVSLKSHSEADQFARGVGPISLIGDESDFERRMDDLKLLYRAYVTDAL 435
Query: 242 SGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKAS 301
SGGR+EE+KL A++QLRNI GLGKRE+EAI VDVTSK YRKRL AVS G LEA DSKA
Sbjct: 436 SGGRLEENKLVAMSQLRNILGLGKREAEAISVDVTSKSYRKRLANAVSSGDLEAQDSKAK 495
Query: 302 FLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVE 361
+LQ LCEELHFD QKA IHEEIYRQKLQQCV DGEL+D++VAALLRLRVMLC+PQQTV+
Sbjct: 496 YLQKLCEELHFDAQKAGAIHEEIYRQKLQQCVTDGELSDDNVAALLRLRVMLCIPQQTVD 555
Query: 362 AAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIF 421
AH++ICG++FEKVV+DAISSGV+GYD E +K+VRKAAHGLRL+RE AMSIASKAVRR+F
Sbjct: 556 TAHAEICGTIFEKVVRDAISSGVDGYDAETRKSVRKAAHGLRLSRETAMSIASKAVRRVF 615
Query: 422 VIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGESSDTS-EEEPIKEEEKQTD 480
YI+RARAAENRT++AKELKK+I FNTLVVTE+VADIKGESSD + EE+P+ +EK+ D
Sbjct: 616 TNYIRRARAAENRTDSAKELKKMIAFNTLVVTEMVADIKGESSDKAPEEDPV--QEKEED 673
Query: 481 EDEEEWESLETLKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEV 540
+++EEW SLE+L+K P KELAEKMGKPGQTEI LKDDLP+RDR DLYKTYLLYC+TGEV
Sbjct: 674 DEDEEWGSLESLRKTRPDKELAEKMGKPGQTEITLKDDLPDRDRIDLYKTYLLYCVTGEV 733
Query: 541 TKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQL 600
T+IPFGA ITTK+DDSEY+LL+QLGGILGL++KEIV++H GLAEQAFRQQAEVILADGQL
Sbjct: 734 TRIPFGAQITTKRDDSEYLLLNQLGGILGLSSKEIVNIHVGLAEQAFRQQAEVILADGQL 793
Query: 601 TKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASV 660
TKAR+EQL+E+QKQVGLP A+K+IKNITTTKMA AIETAV QG+LNIKQIRELKEA+V
Sbjct: 794 TKARVEQLDELQKQVGLPQPQAEKVIKNITTTKMANAIETAVNQGRLNIKQIRELKEANV 853
Query: 661 DLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARN 720
LD+MI+ SLRE LFKKTV +IFSSGTGEFD EVY+ IP+DLSI+ EKA+RVVH+LA++
Sbjct: 854 SLDSMIAVSLREKLFKKTVSDIFSSGTGEFDETEVYQTIPSDLSIDVEKAKRVVHDLAQS 913
Query: 721 RLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSN- 779
RLSNSL+QAV+LLRQ+N +GVV SLNDLLACDKAVPAEP+SWE+ +EL+DL+ IY KS+
Sbjct: 914 RLSNSLVQAVALLRQRNSKGVVLSLNDLLACDKAVPAEPMSWEVSEELSDLYAIYSKSDP 973
Query: 780 -PAPEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF 821
PAPEK+ RLQYLLGI DSTA ALREM D LS+ AEE NFVF
Sbjct: 974 KPAPEKVLRLQYLLGIDDSTATALREMEDGALSSAAEEGNFVF 1016
>sp|O24303|TI110_PEA Protein TIC110, chloroplastic OS=Pisum sativum GN=TIC110 PE=1 SV=1
Length = 996
Score = 1214 bits (3140), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/821 (73%), Positives = 712/821 (86%), Gaps = 2/821 (0%)
Query: 2 FVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDM 61
FV+SV+PPGGE+L+GDEVDKIV FK +LG+DDPDAAA+H+EIGR+LFRQRLEVGDR+G +
Sbjct: 177 FVSSVIPPGGEELKGDEVDKIVNFKSSLGLDDPDAAAVHMEIGRKLFRQRLEVGDREGGV 236
Query: 62 EQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRD 121
EQR AFQKLIYVS +VFG+ASSFLLPWKRVFKVT+SQVE+AIRDNA+RLYASKLKSVGRD
Sbjct: 237 EQRRAFQKLIYVSNIVFGDASSFLLPWKRVFKVTESQVEVAIRDNAQRLYASKLKSVGRD 296
Query: 122 VDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVV 181
D +V L+E Q LSD LAE+LFREH RKLVEENI AL ILKSRTR V GV+QVV
Sbjct: 297 FDLGKLVTLKETQSLCCLSDELAENLFREHARKLVEENISVALGILKSRTRAVPGVSQVV 356
Query: 182 EELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSL 241
EE++KVLAFN+LLIS + H + DR ARGVGPVSLVGGE+D DRK++DLKLLYRAYV+D+L
Sbjct: 357 EEIEKVLAFNDLLISFKNHSDIDRLARGVGPVSLVGGEYDADRKIEDLKLLYRAYVSDAL 416
Query: 242 SGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKAS 301
S GRME++K AALNQL+NIFGLGKRE+EAI++D+T KVYRKRLGQ VS G LE ADSKA+
Sbjct: 417 SSGRMEDNKFAALNQLKNIFGLGKREAEAILLDITRKVYRKRLGQTVSSGELEMADSKAA 476
Query: 302 FLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVE 361
FLQ+LC+ELHFDPQKASE+HEEIYRQKLQQCVADGEL DE+VAALL+LRVMLCVPQQTVE
Sbjct: 477 FLQNLCDELHFDPQKASELHEEIYRQKLQQCVADGELTDENVAALLKLRVMLCVPQQTVE 536
Query: 362 AAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIF 421
AAH++ICG+LFEK+VKDAI+SGV+GYD E KK+VRKAAHGLRLT+E A+SIASKAVR++F
Sbjct: 537 AAHAEICGNLFEKIVKDAIASGVDGYDDETKKSVRKAAHGLRLTKETALSIASKAVRKMF 596
Query: 422 VIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGESSDTSEEEPIKEEEKQTDE 481
+ Y+KR+R+A+ E+AKELKKLI FNTLVVT+LV DIKGES D EEP EE ++ E
Sbjct: 597 ITYVKRSRSAKGNGESAKELKKLIAFNTLVVTKLVEDIKGESPDVKIEEPKIEEPEEIRE 656
Query: 482 DEEEWESLETLKKITPSKELA-EKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEV 540
EE + + + + + A K GK I LKDDLPE+DR DLYKT+L YCLTG+V
Sbjct: 657 SEEYEMRITSDTQENKTGQRACRKDGKAWSDRITLKDDLPEKDRADLYKTFLTYCLTGDV 716
Query: 541 TKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQL 600
+IPFG I KKDD+EY+ L+QLGGILGLT K I+DVHRGLAEQAFR+QAEV+LADGQL
Sbjct: 717 VRIPFGVEIKKKKDDTEYIYLNQLGGILGLTGKVIMDVHRGLAEQAFRKQAEVLLADGQL 776
Query: 601 TKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASV 660
TKAR+EQL ++QK++GL EYAQKIIKNITTTKMAAAIETAV QGKLN+KQIRELKE++V
Sbjct: 777 TKARVEQLGKMQKEIGLSQEYAQKIIKNITTTKMAAAIETAVTQGKLNMKQIRELKESNV 836
Query: 661 DLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARN 720
DLD+M+S SLRE +FKKTV +IFSSGTGEFD EEVYEKIP DL+IN EKAR VV ELA+N
Sbjct: 837 DLDSMVSVSLRETIFKKTVGDIFSSGTGEFDEEEVYEKIPLDLNINKEKARGVVCELAQN 896
Query: 721 RLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPAEPLSWELPDELADLFNIYMKSNP 780
RLSNSLIQAV+LLRQ+N +GVV SLN+LLACDKAVP++ LSWE+ +EL+DL+ IY+KS+P
Sbjct: 897 RLSNSLIQAVALLRQRNHKGVVFSLNNLLACDKAVPSQTLSWEVSEELSDLYTIYLKSDP 956
Query: 781 APEKLTRLQYLLGISDSTAAALREMGDSLLSAGAEEENFVF 821
+PEKL+RLQYLLGI+DSTAAALR+ DSLL AEEE FVF
Sbjct: 957 SPEKLSRLQYLLGINDSTAAALRDSEDSLLET-AEEEKFVF 996
>sp|Q3MHG0|COG4_BOVIN Conserved oligomeric Golgi complex subunit 4 OS=Bos taurus GN=COG4
PE=2 SV=1
Length = 785
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 614 QVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEAS----VDLDNMISES 669
++G P+ Q I + +T+ + + +++ QGK + K I EA V L+N+ E
Sbjct: 498 RMGFPATTLQDIQRGVTSA--VSIMHSSLQQGKFDTKGIESTDEAKLSFLVTLNNV--EV 553
Query: 670 LRENL--FKKTVD----EIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHE 716
EN+ KKT++ ++FS G G A+ ++ +DL+ + K R ++ E
Sbjct: 554 CSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSGKFRDLLQE 606
>sp|Q9H9E3|COG4_HUMAN Conserved oligomeric Golgi complex subunit 4 OS=Homo sapiens
GN=COG4 PE=1 SV=3
Length = 785
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 14/113 (12%)
Query: 614 QVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEAS----VDLDNMISES 669
++G P+ Q I + +T+ + +++ QGK + K I EA V L+N+ E
Sbjct: 498 RMGFPATTFQDIQRGVTSA--VNIMHSSLQQGKFDTKGIESTDEAKMSFLVTLNNV--EV 553
Query: 670 LRENL--FKKTVD----EIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHE 716
EN+ KKT++ ++FS G G A+ ++ +DL+ + K R ++ E
Sbjct: 554 CSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQE 606
>sp|Q8R1U1|COG4_MOUSE Conserved oligomeric Golgi complex subunit 4 OS=Mus musculus
GN=Cog4 PE=2 SV=1
Length = 785
Score = 35.4 bits (80), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 14/113 (12%)
Query: 614 QVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEAS----VDLDNMISES 669
++G P+ Q I + +T+ + +++ QGK + K I EA V L+N+ E
Sbjct: 498 RMGFPATTLQDIQRGVTSA--VNIMHSSLQQGKFDTKGIESTDEAKLSFLVTLNNV--EV 553
Query: 670 LRENL--FKKTVD----EIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHE 716
EN+ KKT++ ++FS G G A+ ++ +DL+ + K R ++ E
Sbjct: 554 CSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQE 606
>sp|Q5R7R6|COG4_PONAB Conserved oligomeric Golgi complex subunit 4 OS=Pongo abelii
GN=COG4 PE=2 SV=1
Length = 785
Score = 35.4 bits (80), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 14/113 (12%)
Query: 614 QVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEAS----VDLDNMISES 669
++G P+ Q I + +T+ + +++ QGK + K I EA V L+N+ E
Sbjct: 498 RMGFPATTFQDIQRGVTSA--VNIMHSSLQQGKFDTKGIESTDEAKMSFLVTLNNV--EV 553
Query: 670 LRENL--FKKTVD----EIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHE 716
EN+ KKT++ ++FS G G A+ ++ +DL+ + K R ++ E
Sbjct: 554 CSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQE 606
>sp|Q1MPL7|PNP_LAWIP Polyribonucleotide nucleotidyltransferase OS=Lawsonia
intracellularis (strain PHE/MN1-00) GN=pnp PE=3 SV=1
Length = 736
Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 30/139 (21%)
Query: 546 GASITTKKDDSEYVLLSQLGG-----------ILGLTTKEIVDVH-----RGLAEQAFRQ 589
G ++ K+D ++++L+ + G I G TTK I V GL R+
Sbjct: 470 GVAMGLIKEDDQFIVLTDIIGDEDAFGDMDFKIAG-TTKGITAVQMDIKITGLTTDVMRK 528
Query: 590 QAEVILADGQLTKARIEQLNEVQKQVGLP----SEYAQKIIKNITTTKMAAAIETAVAQG 645
E Q +ARI L+E+ K + +P S+YA + + + AI + G
Sbjct: 529 AME------QAREARIHILSEMAKALDVPRSNLSQYAPQHAELVVNPD---AIRMIIGPG 579
Query: 646 KLNIKQIRELKEASVDLDN 664
NIKQI + A++D+++
Sbjct: 580 GKNIKQITTVTGAAIDIND 598
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 282,401,374
Number of Sequences: 539616
Number of extensions: 11817414
Number of successful extensions: 66944
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 269
Number of HSP's that attempted gapping in prelim test: 64648
Number of HSP's gapped (non-prelim): 1570
length of query: 821
length of database: 191,569,459
effective HSP length: 126
effective length of query: 695
effective length of database: 123,577,843
effective search space: 85886600885
effective search space used: 85886600885
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)