Query 003418
Match_columns 821
No_of_seqs 69 out of 71
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 23:03:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05099 TerB: Tellurite resis 92.6 0.32 7E-06 46.5 6.7 112 585-712 25-137 (140)
2 cd07316 terB_like_DjlA N-termi 92.2 2.4 5.2E-05 38.6 11.6 95 241-354 11-106 (106)
3 PF04391 DUF533: Protein of un 90.2 3.5 7.6E-05 42.9 11.6 110 228-367 78-187 (188)
4 PF05099 TerB: Tellurite resis 89.7 2 4.4E-05 41.0 9.0 115 229-363 23-138 (140)
5 cd07313 terB_like_2 tellurium 89.5 6 0.00013 36.1 11.5 92 241-353 11-104 (104)
6 cd07313 terB_like_2 tellurium 89.2 6.3 0.00014 36.0 11.5 97 591-703 7-104 (104)
7 cd07176 terB tellurite resista 88.2 9.6 0.00021 34.7 11.9 102 236-355 9-111 (111)
8 PRK09430 djlA Dna-J like membr 85.7 13 0.00029 40.5 13.2 109 242-368 68-176 (267)
9 PF03735 ENT: ENT domain; Int 83.1 16 0.00036 32.6 10.2 67 578-644 4-70 (73)
10 cd07311 terB_like_1 tellurium 82.9 44 0.00095 33.6 14.5 106 588-716 28-133 (150)
11 cd07316 terB_like_DjlA N-termi 82.2 12 0.00026 34.1 9.5 99 590-704 6-106 (106)
12 cd07311 terB_like_1 tellurium 80.0 26 0.00057 35.2 11.8 112 228-366 22-133 (150)
13 COG2979 Uncharacterized protei 79.2 21 0.00046 37.9 11.0 109 231-369 112-220 (225)
14 PF03735 ENT: ENT domain; Int 77.8 21 0.00046 31.9 9.2 68 315-382 3-70 (73)
15 cd07176 terB tellurite resista 73.5 44 0.00096 30.3 10.6 106 586-705 5-111 (111)
16 cd07177 terB_like tellurium re 72.7 49 0.0011 29.3 10.5 94 240-353 10-104 (104)
17 PRK09430 djlA Dna-J like membr 72.3 30 0.00065 37.8 10.6 50 582-631 128-177 (267)
18 cd07178 terB_like_YebE telluri 70.9 41 0.0009 31.1 9.7 93 233-355 3-95 (95)
19 cd07178 terB_like_YebE telluri 68.7 93 0.002 28.8 11.6 93 587-705 3-95 (95)
20 TIGR02675 tape_meas_nterm tape 64.0 31 0.00066 30.7 7.1 72 561-651 1-74 (75)
21 PF04391 DUF533: Protein of un 61.5 1.6E+02 0.0034 30.9 12.8 107 580-713 76-183 (188)
22 COG3793 TerB Tellurite resista 58.6 20 0.00043 36.0 5.4 78 519-621 62-141 (144)
23 PF08429 PLU-1: PLU-1-like pro 52.2 3.7E+02 0.008 29.8 20.1 170 585-757 116-298 (335)
24 KOG3973 Uncharacterized conser 51.1 3.6E+02 0.0078 31.1 14.0 122 504-625 82-220 (465)
25 PF10025 DUF2267: Uncharacteri 47.9 83 0.0018 30.2 7.8 93 605-717 3-97 (125)
26 PF07216 LcrG: LcrG protein; 46.4 44 0.00096 31.2 5.2 45 589-636 12-56 (93)
27 PF09548 Spore_III_AB: Stage I 44.9 62 0.0013 32.9 6.7 58 227-284 83-140 (170)
28 TIGR02573 LcrG_PcrG type III s 44.5 58 0.0013 30.2 5.6 46 589-637 9-54 (90)
29 KOG3543 Ca2+-dependent activat 43.6 2.1E+02 0.0045 35.2 11.3 188 206-427 694-900 (1218)
30 COG1405 SUA7 Transcription ini 43.0 5.1E+02 0.011 28.9 13.8 98 225-334 117-229 (285)
31 cd07177 terB_like tellurium re 38.6 2.7E+02 0.006 24.4 12.1 98 590-703 6-104 (104)
32 PRK00423 tfb transcription ini 37.1 4.5E+02 0.0098 29.3 12.5 97 226-334 143-253 (310)
33 COG4103 Uncharacterized protei 36.6 2.6E+02 0.0056 28.4 9.2 105 590-710 35-140 (148)
34 TIGR02833 spore_III_AB stage I 36.3 1E+02 0.0022 31.6 6.7 57 228-284 84-140 (170)
35 PRK08307 stage III sporulation 35.8 84 0.0018 32.1 6.0 58 227-284 84-141 (171)
36 cd04755 Commd7 COMM_Domain con 35.4 2.1E+02 0.0046 29.9 8.8 104 556-673 31-134 (180)
37 TIGR01446 DnaD_dom DnaD and ph 33.2 2.6E+02 0.0057 23.9 7.9 31 599-629 12-42 (73)
38 PF04967 HTH_10: HTH DNA bindi 32.8 75 0.0016 26.7 4.2 47 588-634 6-52 (53)
39 COG1405 SUA7 Transcription ini 30.9 7.9E+02 0.017 27.4 14.3 99 604-711 100-213 (285)
40 PF13393 tRNA-synt_His: Histid 30.6 3.2E+02 0.0069 29.7 9.9 66 260-329 118-183 (311)
41 PHA01351 putative minor struct 30.4 1.2E+03 0.026 29.5 17.6 102 613-717 555-667 (1070)
42 KOG2534 DNA polymerase IV (fam 30.1 2E+02 0.0044 32.7 8.1 97 157-284 12-118 (353)
43 PF03280 Lipase_chap: Proteoba 30.0 6.5E+02 0.014 26.2 12.0 116 584-702 58-187 (195)
44 COG2511 GatE Archaeal Glu-tRNA 29.2 1.1E+03 0.024 28.9 14.1 134 606-745 458-620 (631)
45 KOG0044 Ca2+ sensor (EF-Hand s 28.5 3.8E+02 0.0082 28.3 9.5 144 227-397 26-175 (193)
46 PHA00666 putative protease 28.1 1.4E+02 0.003 32.3 6.2 33 597-630 93-126 (233)
47 CHL00168 pbsA heme oxygenase; 27.9 1E+02 0.0022 33.4 5.3 111 232-356 124-237 (238)
48 PRK11235 bifunctional antitoxi 27.6 1.6E+02 0.0034 26.9 5.7 54 300-360 13-73 (80)
49 PF07746 LigA: Aromatic-ring-o 26.8 3.1E+02 0.0067 25.4 7.5 67 303-375 1-85 (88)
50 PHA00666 putative protease 26.3 1.4E+02 0.0031 32.3 5.9 34 118-151 93-126 (233)
51 PHA01351 putative minor struct 26.0 1.4E+03 0.031 28.9 16.1 176 576-754 415-611 (1070)
52 PRK09706 transcriptional repre 25.2 3E+02 0.0066 26.5 7.7 62 20-83 8-71 (135)
53 TIGR00115 tig trigger factor. 24.0 1.1E+03 0.024 26.9 14.0 104 607-717 279-388 (408)
54 PRK12421 ATP phosphoribosyltra 23.3 9.3E+02 0.02 27.7 12.3 61 260-325 131-191 (392)
55 PF08006 DUF1700: Protein of u 22.9 2.2E+02 0.0047 28.9 6.4 58 560-629 6-64 (181)
56 COG1725 Predicted transcriptio 22.7 3.5E+02 0.0077 26.7 7.5 85 629-721 12-123 (125)
57 PLN00047 photosystem II biogen 22.5 1.1E+03 0.024 26.4 15.2 96 297-410 122-228 (283)
58 PRK01294 lipase chaperone; Pro 22.2 1.2E+03 0.026 26.6 14.7 125 584-712 184-323 (336)
59 cd04758 Commd10 COMM_Domain co 22.0 8.1E+02 0.018 25.2 10.4 59 658-717 3-61 (186)
60 COG3413 Predicted DNA binding 21.8 1.4E+02 0.0031 31.1 5.0 48 589-636 162-209 (215)
61 COG4103 Uncharacterized protei 21.8 8.7E+02 0.019 24.8 13.9 102 236-360 34-140 (148)
62 PF09548 Spore_III_AB: Stage I 21.4 4.5E+02 0.0097 26.7 8.3 60 583-642 85-144 (170)
63 KOG3157 Proline synthetase co- 21.1 1.5E+02 0.0033 31.9 4.8 49 515-564 139-191 (244)
64 KOG4675 Uncharacterized conser 20.6 7.7E+02 0.017 27.5 10.2 85 572-656 5-90 (273)
65 TIGR00443 hisZ_biosyn_reg ATP 20.2 9E+02 0.02 26.7 11.0 62 260-326 117-178 (314)
No 1
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=92.60 E-value=0.32 Score=46.51 Aligned_cols=112 Identities=22% Similarity=0.381 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchhh
Q 003418 585 QAFRQQAEVILADGQLTKARIEQLNEVQ-KQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLD 663 (821)
Q Consensus 585 ~ayrqql~~~L~~G~Ld~a~a~~L~~Iq-~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L~ 663 (821)
.+++=.+.-+.+||.++.+....+..+. ...++|+.....++..+...+- . ..+..+. -..+.
T Consensus 25 a~~~ll~~~a~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~-~~~~~~~------~~~l~ 88 (140)
T PF05099_consen 25 ALLALLAAVAKADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQ---------E-PIDLEEL------LRELR 88 (140)
T ss_dssp HHHHHHHHHHHTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHH---------H-CCHHHHH------HHHHC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHh---------c-cccHHHH------HHHHH
Confidence 3445566778889999999999998877 9999999988877654322211 1 1122222 11244
Q ss_pred hhccHHHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhcCCCHHHHHH
Q 003418 664 NMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARR 712 (821)
Q Consensus 664 ~~i~~~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L~L~~ekAk~ 712 (821)
..++.+.|..+++..+.=+.++|..+-.+.+++.++...|||+.+.-..
T Consensus 89 ~~~~~~~r~~ll~~l~~ia~ADG~~~~~E~~~l~~ia~~L~i~~~~~~~ 137 (140)
T PF05099_consen 89 DSLSPEEREDLLRMLIAIAYADGEISPEEQEFLRRIAEALGISEEDFQR 137 (140)
T ss_dssp TS--HHHHHHHHHHHHHHCTCTTC-SCCHHHHHHHHHHHCTS-SS----
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHhc
Confidence 4466899999999999999999999888889999999999999876544
No 2
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=92.21 E-value=2.4 Score=38.65 Aligned_cols=95 Identities=20% Similarity=0.322 Sum_probs=69.7
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhccchHHHHHHHhhhhCCCHHHHHHH
Q 003418 241 LSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEI 320 (821)
Q Consensus 241 l~~g~l~~~~~~~L~~LknilGL~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a~~ka~~lq~lc~~L~fd~e~a~e~ 320 (821)
..+|++++.|...|..+=.-+++++.+... ...+|+... ....+...+.+.++..++.+|+....+
T Consensus 11 ~aDG~v~~~E~~~i~~~l~~~~~~~~~~~~-----~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~r~~~ 76 (106)
T cd07316 11 KADGRVSEAEIQAARALMDQMGLDAEARRE-----AIRLFNEGK---------ESDFGLEEYARQFRRACGGRPELLLQL 76 (106)
T ss_pred hccCCcCHHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhC---------cCCCCHHHHHHHHHHHHCCCHHHHHHH
Confidence 378999999999999998888876333222 233444332 122455678888888999999987777
Q ss_pred HHHHHHHHHHHHh-hcCccChHhHHHHHHHHHHhc
Q 003418 321 HEEIYRQKLQQCV-ADGELNDEDVAALLRLRVMLC 354 (821)
Q Consensus 321 hk~iYr~kL~q~v-s~~~lsded~~~L~~lr~lL~ 354 (821)
-.-++ .+. +||.++..+...|.++...|+
T Consensus 77 l~~l~-----~vA~ADG~~~~~E~~~l~~ia~~Lg 106 (106)
T cd07316 77 LEFLF-----QIAYADGELSEAERELLRRIARLLG 106 (106)
T ss_pred HHHHH-----HHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 66666 333 499999999999999998885
No 3
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=90.15 E-value=3.5 Score=42.90 Aligned_cols=110 Identities=21% Similarity=0.277 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHcCCChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhccchHHHHHHHh
Q 003418 228 DLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLC 307 (821)
Q Consensus 228 elk~lY~~yL~~~l~~g~l~~~~~~~L~~LknilGL~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a~~ka~~lq~lc 307 (821)
.-..|-++-+.-+-.+|+++++|...|..-=.-+|++..+-.-+..+..+|+==..|...|+
T Consensus 78 ~a~lllrAMIaAAkADG~ID~~Er~~I~~~l~~~g~d~e~~~~l~~eL~~P~d~~~la~~v~------------------ 139 (188)
T PF04391_consen 78 HARLLLRAMIAAAKADGHIDEEERQRIEGALQELGLDAEERAWLQAELAAPLDPDALAAAVT------------------ 139 (188)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCCHHHHHHhCC------------------
Confidence 44578888888888999999999999988777789997776666666665554444433332
Q ss_pred hhhCCCHHHHHHHHHHHHHHHHHHHhhcCccChHhHHHHHHHHHHhccCHHHHHHHHHhh
Q 003418 308 EELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDI 367 (821)
Q Consensus 308 ~~L~fd~e~a~e~hk~iYr~kL~q~vs~~~lsded~~~L~~lr~lL~I~~~~V~~ah~d~ 367 (821)
+|+. -.++| +-+++.=..-+..+.++|..+..-|+||+..|..+|+.+
T Consensus 140 -----~~e~----A~evY---~aS~laid~d~~~Er~YL~~LA~aL~L~~~lv~~le~~~ 187 (188)
T PF04391_consen 140 -----DPEQ----AAEVY---LASLLAIDVDTFAERAYLDELAQALGLDPDLVAQLEQQA 187 (188)
T ss_pred -----CHHH----HHHHH---HHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHc
Confidence 3333 34567 333344234588899999999999999999999998753
No 4
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=89.74 E-value=2 Score=41.00 Aligned_cols=115 Identities=23% Similarity=0.310 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcccCCCCCChHHHHHHHHHH-HHcCCChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhccchHHHHHHHh
Q 003418 229 LKLLYRAYVTDSLSGGRMEESKLAALNQLR-NIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLC 307 (821)
Q Consensus 229 lk~lY~~yL~~~l~~g~l~~~~~~~L~~Lk-nilGL~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a~~ka~~lq~lc 307 (821)
...+......=+..+|.++.+|...|.++= +.+|+++.+...+...+ .....+. . -+++++
T Consensus 23 ~~a~~~ll~~~a~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~-------------~----~~~~~~ 84 (140)
T PF05099_consen 23 REALLALLAAVAKADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELA-DELKQEP-------------I----DLEELL 84 (140)
T ss_dssp HHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHH-CHHHHHC-------------C----HHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHH-HHHHhcc-------------c----cHHHHH
Confidence 445555555555589999999999998755 88899988877664432 2222210 0 112223
Q ss_pred hhhCCCHHHHHHHHHHHHHHHHHHHhhcCccChHhHHHHHHHHHHhccCHHHHHHH
Q 003418 308 EELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAA 363 (821)
Q Consensus 308 ~~L~fd~e~a~e~hk~iYr~kL~q~vs~~~lsded~~~L~~lr~lL~I~~~~V~~a 363 (821)
..++=. ...+....+++.-+.=..+||.+++++..+|.++...|+||.+++..+
T Consensus 85 ~~l~~~--~~~~~r~~ll~~l~~ia~ADG~~~~~E~~~l~~ia~~L~i~~~~~~~~ 138 (140)
T PF05099_consen 85 RELRDS--LSPEEREDLLRMLIAIAYADGEISPEEQEFLRRIAEALGISEEDFQRI 138 (140)
T ss_dssp HHHCTS----HHHHHHHHHHHHHHCTCTTC-SCCHHHHHHHHHHHCTS-SS-----
T ss_pred HHHHHh--hchHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHhcc
Confidence 222211 114444556655555555699999999999999999999999987654
No 5
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=89.45 E-value=6 Score=36.11 Aligned_cols=92 Identities=25% Similarity=0.386 Sum_probs=62.8
Q ss_pred cCCCCCChHHHHHHHHH-HHHcCCChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhccchHHHHHHHhhhhCCCHHHHHH
Q 003418 241 LSGGRMEESKLAALNQL-RNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASE 319 (821)
Q Consensus 241 l~~g~l~~~~~~~L~~L-knilGL~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a~~ka~~lq~lc~~L~fd~e~a~e 319 (821)
..+|+++..|.+.+..+ .+.||+++.++..+.. .+++.. ....+...+.+.+-..+ +++....
T Consensus 11 ~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~-----~~~~~~---------~~~~~~~~~~~~~~~~~--~~~~r~~ 74 (104)
T cd07313 11 RADGEYDEEERAAIDRLLAERFGLDAEEAAELLA-----EAEALE---------EEAPDLYEFTSLIKEHF--DYEERLE 74 (104)
T ss_pred HHcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHH-----HHHHHH---------HhCCCHHHHHHHHHHhC--CHHHHHH
Confidence 37899999999999987 6669999877766543 233322 11233444555544433 7777776
Q ss_pred HHHHHHHHHHHHHh-hcCccChHhHHHHHHHHHHh
Q 003418 320 IHEEIYRQKLQQCV-ADGELNDEDVAALLRLRVML 353 (821)
Q Consensus 320 ~hk~iYr~kL~q~v-s~~~lsded~~~L~~lr~lL 353 (821)
+-+.++ ++. +||.++..+...|.++...|
T Consensus 75 ~l~~L~-----~vA~ADG~~~~~E~~~l~~ia~~L 104 (104)
T cd07313 75 LVEALW-----EVAYADGELDEYEEHLIRRVADLL 104 (104)
T ss_pred HHHHHH-----HHHHhcCCCCHHHHHHHHHHHhhC
Confidence 666665 333 49999999999999998765
No 6
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=89.19 E-value=6.3 Score=35.95 Aligned_cols=97 Identities=15% Similarity=0.243 Sum_probs=70.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchhhhhccHH
Q 003418 591 AEVILADGQLTKARIEQLNEVQKQ-VGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISES 669 (821)
Q Consensus 591 l~~~L~~G~Ld~a~a~~L~~Iq~~-Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L~~~i~~~ 669 (821)
++.+.+||..+.+.++.+..+..+ ++++++....+++..... . +...+..+.... +...++.+
T Consensus 7 ~~vA~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~-~---------~~~~~~~~~~~~------~~~~~~~~ 70 (104)
T cd07313 7 VEVARADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEAL-E---------EEAPDLYEFTSL------IKEHFDYE 70 (104)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-H---------HhCCCHHHHHHH------HHHhCCHH
Confidence 567788999999999999999777 799999888877543221 1 112344443322 33345788
Q ss_pred HHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhc
Q 003418 670 LRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADL 703 (821)
Q Consensus 670 ~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L 703 (821)
.|..+-+--+.=+.++|..+-.+.++++++...|
T Consensus 71 ~r~~~l~~L~~vA~ADG~~~~~E~~~l~~ia~~L 104 (104)
T cd07313 71 ERLELVEALWEVAYADGELDEYEEHLIRRVADLL 104 (104)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhC
Confidence 8999999999999999998777778888887643
No 7
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=88.16 E-value=9.6 Score=34.67 Aligned_cols=102 Identities=23% Similarity=0.319 Sum_probs=61.2
Q ss_pred HHhcccCCCCCChHHHHHHHHHHH-HcCCChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhccchHHHHHHHhhhhCCCH
Q 003418 236 YVTDSLSGGRMEESKLAALNQLRN-IFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDP 314 (821)
Q Consensus 236 yL~~~l~~g~l~~~~~~~L~~Lkn-ilGL~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a~~ka~~lq~lc~~L~fd~ 314 (821)
-+.-+..+|+++.+|...+.++=+ .++++..+...+.. +|+...... . ..+...+...+-..++ |
T Consensus 9 ~~~va~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~-----~~~~~~~~~-~------~~~~~~~~~~~~~~~~--~ 74 (111)
T cd07176 9 AALVAAADGDIDDAELQAIEALLRSLPVLSGFDRERLIA-----LLDKLLALL-R------PEGLAALLKAAAKLLP--P 74 (111)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHcCccccCCCHHHHHH-----HHHHHHHHH-H------HhhHHHHHHHHHHhCC--H
Confidence 334455899999999999999876 78888655544332 222222000 0 0122333333333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCccChHhHHHHHHHHHHhcc
Q 003418 315 QKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCV 355 (821)
Q Consensus 315 e~a~e~hk~iYr~kL~q~vs~~~lsded~~~L~~lr~lL~I 355 (821)
+.. ..+|+--+.=..+||.++..+...|.+|+..|+|
T Consensus 75 ~~r----~~~~~~~~~ia~aDG~~~~~E~~~L~~l~~~Lgl 111 (111)
T cd07176 75 ELR----ETAFAVAVDIAAADGEVDPEERAVLEKLYRALGL 111 (111)
T ss_pred HHH----HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCc
Confidence 333 3344333344446999999999999999999986
No 8
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=85.68 E-value=13 Score=40.50 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=74.0
Q ss_pred CCCCCChHHHHHHHHHHHHcCCChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhccchHHHHHHHhhhhCCCHHHHHHHH
Q 003418 242 SGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIH 321 (821)
Q Consensus 242 ~~g~l~~~~~~~L~~LknilGL~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a~~ka~~lq~lc~~L~fd~e~a~e~h 321 (821)
.+|+++..|++....+-+.|+|+..+-... ..+|++.- ....+-.++++.+-..++-.++.+..+=
T Consensus 68 ADG~Vse~Ei~~~~~l~~~~~l~~~~r~~a-----~~lf~~~k---------~~~~~l~~~~~~~~~~~~~r~~l~~~lL 133 (267)
T PRK09430 68 AKGRVTEADIRIASQLMDRMNLHGEARRAA-----QQAFREGK---------EPDFPLREKLRQFRSVCGGRFDLLRMFL 133 (267)
T ss_pred cCCCcCHHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHhc---------ccCCCHHHHHHHHHHHhcccHHHHHHHH
Confidence 789999999998888989999996653322 24444332 1113334455555555555555554443
Q ss_pred HHHHHHHHHHHhhcCccChHhHHHHHHHHHHhccCHHHHHHHHHhhh
Q 003418 322 EEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDIC 368 (821)
Q Consensus 322 k~iYr~kL~q~vs~~~lsded~~~L~~lr~lL~I~~~~V~~ah~d~~ 368 (821)
.-.+ +--.+||.++..+...|.+|...|+|+..+...+....-
T Consensus 134 ~~l~----~vA~ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~ 176 (267)
T PRK09430 134 EIQI----QAAFADGSLHPNERQVLYVIAEELGFSRFQFDQLLRMMQ 176 (267)
T ss_pred HHHH----HHHHhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3222 111359999999999999999999999999888776543
No 9
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=83.07 E-value=16 Score=32.60 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=49.8
Q ss_pred HHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003418 578 VHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQ 644 (821)
Q Consensus 578 Ih~~va~~ayrqql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~ 644 (821)
....+--.+|..-+..--++|.|+.++-..|.+|++.|+++.+.=...+..+.....-..|......
T Consensus 4 ~l~~LE~eAY~svl~Af~Aqg~lsweke~lLt~Lr~~L~IS~e~H~~~l~~~~~De~l~~ir~~~~~ 70 (73)
T PF03735_consen 4 QLHRLELEAYSSVLRAFRAQGPLSWEKEKLLTELRKELNISDEEHREELRRAVSDEQLKTIREWRQG 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHTT--HHHHHHHHHHHHH-HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhccHHHHHHHHHhhc
Confidence 3456777899999999999999999999999999999999999988888888775554544444433
No 10
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=82.92 E-value=44 Score=33.62 Aligned_cols=106 Identities=13% Similarity=0.149 Sum_probs=72.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchhhhhcc
Q 003418 588 RQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMIS 667 (821)
Q Consensus 588 rqql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L~~~i~ 667 (821)
+..+.-+-+||..++++.+.+..+..+++++++.....++. ..+ +.+..-..-. .. +.
T Consensus 28 ~~Ll~iAkADG~Vse~Ei~~~~~~m~~~~L~~e~~~~aie~--------------~~~----~~L~~~~~~~---~~-~~ 85 (150)
T cd07311 28 KALLVCAKGDGVISPEERDWAIGYAAARGGDADMVEELKEY--------------TAD----EDLEEVDFRS---PN-IK 85 (150)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHh--------------Ccc----ccHHHHHHHH---Hh-cc
Confidence 44556677899999999999999999999999986666554 111 1111110000 00 33
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhcCCCHHHHHHHHHH
Q 003418 668 ESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHE 716 (821)
Q Consensus 668 ~~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L~L~~ekAk~Il~~ 716 (821)
.+.+.-+.. .+.=++++|..+-.+.+++.++...||++...-..+...
T Consensus 86 ~~~~~ll~~-~l~vA~ADG~l~~~E~~lL~~iA~~LGis~~~~~~l~~~ 133 (150)
T cd07311 86 SSRRALLYD-AIQVCAADGELSPGEVAAVRKAASLLGISEDEVQKLEEI 133 (150)
T ss_pred hhHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444444444 667788888876666799999999999999877776655
No 11
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=82.18 E-value=12 Score=34.08 Aligned_cols=99 Identities=16% Similarity=0.236 Sum_probs=69.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchhhhh--cc
Q 003418 590 QAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNM--IS 667 (821)
Q Consensus 590 ql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L~~~--i~ 667 (821)
.+..+.+||..++++.+++..+-.++..++....+++.-+.. ....+ .+..++... +... .+
T Consensus 6 l~~vA~aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~------l~~~~~~~ 69 (106)
T cd07316 6 MGKLAKADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNE---------GKESD-FGLEEYARQ------FRRACGGR 69 (106)
T ss_pred HhHHHhccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---------hCcCC-CCHHHHHHH------HHHHHCCC
Confidence 456788899999999999999999999875544444332211 11122 233333221 2222 57
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhcC
Q 003418 668 ESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLS 704 (821)
Q Consensus 668 ~~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L~ 704 (821)
.+.|..+++-.+.=+.++|..+-.+.++++++..-||
T Consensus 70 ~~~r~~~l~~l~~vA~ADG~~~~~E~~~l~~ia~~Lg 106 (106)
T cd07316 70 PELLLQLLEFLFQIAYADGELSEAERELLRRIARLLG 106 (106)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 8899999999999999999887777799999988775
No 12
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=80.05 E-value=26 Score=35.21 Aligned_cols=112 Identities=16% Similarity=0.159 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHcCCChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhccchHHHHHHHh
Q 003418 228 DLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLC 307 (821)
Q Consensus 228 elk~lY~~yL~~~l~~g~l~~~~~~~L~~LknilGL~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a~~ka~~lq~lc 307 (821)
++...-+.-++=+-.+|+++..|+..+..+=.-+||+..+...+... .++ +.....+....
T Consensus 22 ~~~~~~~~Ll~iAkADG~Vse~Ei~~~~~~m~~~~L~~e~~~~aie~---------------~~~----~~L~~~~~~~~ 82 (150)
T cd07311 22 DKLAYLKALLVCAKGDGVISPEERDWAIGYAAARGGDADMVEELKEY---------------TAD----EDLEEVDFRSP 82 (150)
T ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHh---------------Ccc----ccHHHHHHHHH
Confidence 34444444444455899999999999998877779996654433322 111 11222222211
Q ss_pred hhhCCCHHHHHHHHHHHHHHHHHHHhhcCccChHhHHHHHHHHHHhccCHHHHHHHHHh
Q 003418 308 EELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSD 366 (821)
Q Consensus 308 ~~L~fd~e~a~e~hk~iYr~kL~q~vs~~~lsded~~~L~~lr~lL~I~~~~V~~ah~d 366 (821)
. +++.- +..++. -++-..+||.++..+...|.++...|++|..+....+.-
T Consensus 83 ~---~~~~~----~~ll~~-~l~vA~ADG~l~~~E~~lL~~iA~~LGis~~~~~~l~~~ 133 (150)
T cd07311 83 N---IKSSR----RALLYD-AIQVCAADGELSPGEVAAVRKAASLLGISEDEVQKLEEI 133 (150)
T ss_pred h---cchhH----HHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 11111 112232 443344599999999999999999999999999887665
No 13
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.22 E-value=21 Score=37.94 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=84.2
Q ss_pred HHHHHHHhcccCCCCCChHHHHHHHHHHHHcCCChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhccchHHHHHHHhhhh
Q 003418 231 LLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEEL 310 (821)
Q Consensus 231 ~lY~~yL~~~l~~g~l~~~~~~~L~~LknilGL~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a~~ka~~lq~lc~~L 310 (821)
.|-++-+.-+-++|++++.|.++|.+==...|+++.=..=+..++..|+==.+|...+.+
T Consensus 112 ~ll~AmIaAAkaDGhIDe~ERa~I~~~l~esG~d~e~~~~le~El~~PlD~~~ia~~a~~-------------------- 171 (225)
T COG2979 112 TLLRAMIAAAKADGHIDEKERARIMQKLQESGVDPEAQAFLEQELEQPLDPDEIAAAARN-------------------- 171 (225)
T ss_pred HHHHHHHHHHhhcCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCHHHHHHHhcC--------------------
Confidence 567888888889999999999999988889999987777777777777777777555544
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCccChHhHHHHHHHHHHhccCHHHHHHHHHhhhh
Q 003418 311 HFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICG 369 (821)
Q Consensus 311 ~fd~e~a~e~hk~iYr~kL~q~vs~~~lsded~~~L~~lr~lL~I~~~~V~~ah~d~~g 369 (821)
-+..-++| +.+|+.=-..+-.+..+|..+..-|+||++-|+.+-++...
T Consensus 172 -------ee~a~ElY---~ASrl~id~d~r~Er~YL~~La~~L~L~dalvd~lE~qv~~ 220 (225)
T COG2979 172 -------EEQALELY---LASRLAIDDDSRMERSYLNALAGALGLPDALVDHLERQVGQ 220 (225)
T ss_pred -------HHHHHHHH---HHHHHhcCchhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 33445667 45555544456667889999999999999999988776543
No 14
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=77.84 E-value=21 Score=31.89 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCccChHhHHHHHHHHHHhccCHHHHHHHHHhhhhhhHHHHHHHHHhc
Q 003418 315 QKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISS 382 (821)
Q Consensus 315 e~a~e~hk~iYr~kL~q~vs~~~lsded~~~L~~lr~lL~I~~~~V~~ah~d~~g~lf~k~V~eAl~~ 382 (821)
...+.++.+.|..-|..+-+.|-||.+...-|..+|..|+|+++.=....+-+...--=+.|.+...+
T Consensus 3 ~~l~~LE~eAY~svl~Af~Aqg~lsweke~lLt~Lr~~L~IS~e~H~~~l~~~~~De~l~~ir~~~~~ 70 (73)
T PF03735_consen 3 RQLHRLELEAYSSVLRAFRAQGPLSWEKEKLLTELRKELNISDEEHREELRRAVSDEQLKTIREWRQG 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHTT--HHHHHHHHHHHHH-HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhccHHHHHHHHHhhc
Confidence 34578889999999999999888999999999999999999998766666655554444444444433
No 15
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=73.50 E-value=44 Score=30.31 Aligned_cols=106 Identities=19% Similarity=0.248 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchhhh
Q 003418 586 AFRQQAEVILADGQLTKARIEQLNEVQK-QVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDN 664 (821)
Q Consensus 586 ayrqql~~~L~~G~Ld~a~a~~L~~Iq~-~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L~~ 664 (821)
++.=-+..+.+||.++.+..+.+.++-. ..++++....++..-. ..-... +.. .+..++.. .+..
T Consensus 5 ~~~l~~~va~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~-~~~~~~----~~~---~~~~~~~~------~~~~ 70 (111)
T cd07176 5 LVALAALVAAADGDIDDAELQAIEALLRSLPVLSGFDRERLIALL-DKLLAL----LRP---EGLAALLK------AAAK 70 (111)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHH-HHHHHH----HHH---hhHHHHHH------HHHH
Confidence 4445567788999999998777777665 7777755444443322 211111 100 12222221 2233
Q ss_pred hccHHHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhcCC
Q 003418 665 MISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSI 705 (821)
Q Consensus 665 ~i~~~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L~L 705 (821)
..+.+.|..+|+-.+.=+.++|..+-.+..+++++...|||
T Consensus 71 ~~~~~~r~~~~~~~~~ia~aDG~~~~~E~~~L~~l~~~Lgl 111 (111)
T cd07176 71 LLPPELRETAFAVAVDIAAADGEVDPEERAVLEKLYRALGL 111 (111)
T ss_pred hCCHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCc
Confidence 35589999999999999999998877777999999999986
No 16
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=72.69 E-value=49 Score=29.28 Aligned_cols=94 Identities=30% Similarity=0.415 Sum_probs=52.3
Q ss_pred ccCCCCCChHHHHHHHHHHHHcC-CChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhccchHHHHHHHhhhhCCCHHHHH
Q 003418 240 SLSGGRMEESKLAALNQLRNIFG-LGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKAS 318 (821)
Q Consensus 240 ~l~~g~l~~~~~~~L~~LknilG-L~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a~~ka~~lq~lc~~L~fd~e~a~ 318 (821)
+..+|+++++|...+.++=.-++ +++.+...+. +......+. . .++. .+..+...+. ++
T Consensus 10 a~aDG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~------~~~~-~~~~~~~~~~-~~---- 69 (104)
T cd07177 10 AKADGRVDEEEIAAIEALLRRLPLLDAEERAELI-ALLEEPLAE-------A------GDLA-ALAALLKELP-DA---- 69 (104)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhCCCHHHHHHHH-HHHHHHHHh-------c------ccHH-HHHHHHHHhC-CH----
Confidence 34699999999999997666554 4554444432 222222221 0 0111 1111111111 22
Q ss_pred HHHHHHHHHHHHHHhhcCccChHhHHHHHHHHHHh
Q 003418 319 EIHEEIYRQKLQQCVADGELNDEDVAALLRLRVML 353 (821)
Q Consensus 319 e~hk~iYr~kL~q~vs~~~lsded~~~L~~lr~lL 353 (821)
+-...+|+.-+.=+-+||.+++.+...|.++...|
T Consensus 70 ~~r~~~l~~~~~ia~aDG~~~~~E~~~l~~l~~~L 104 (104)
T cd07177 70 ELREALLAALWEVALADGELDPEERALLRRLADAL 104 (104)
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHhhC
Confidence 34444554444444469999999999999988764
No 17
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=72.27 E-value=30 Score=37.77 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=41.8
Q ss_pred HhHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003418 582 LAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITT 631 (821)
Q Consensus 582 va~~ayrqql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~ 631 (821)
+......-+...+.+||.|++.+.+.|..|++-||+|+..-..++.....
T Consensus 128 l~~~lL~~l~~vA~ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~~ 177 (267)
T PRK09430 128 LLRMFLEIQIQAAFADGSLHPNERQVLYVIAEELGFSRFQFDQLLRMMQA 177 (267)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44444566678999999999999999999999999999988888776543
No 18
>cd07178 terB_like_YebE tellurium resistance terB-like protein, subgroup 3. This family includes several uncharacterized bacterial proteins including an Escherichia coli protein called YebE. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=70.94 E-value=41 Score=31.10 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=61.2
Q ss_pred HHHHHhcccCCCCCChHHHHHHHHHHHHcCCChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhccchHHHHHHHhhhhCC
Q 003418 233 YRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHF 312 (821)
Q Consensus 233 Y~~yL~~~l~~g~l~~~~~~~L~~LknilGL~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a~~ka~~lq~lc~~L~f 312 (821)
-++-+.-+-++|+++.+|...|.++-.-+|+++.+ +..+...+ .. .-++. .++..++-
T Consensus 3 lrami~aAkADG~id~~E~~~I~~~~~~~~~~~~~---------~~~~~~~l----~~-----p~~~~----~la~~~~~ 60 (95)
T cd07178 3 LRAMIAAAKADGHIDEAERARILGELGEAGLDAEE---------RAFLEAEL----AA-----PLDPD----ALAAAVPD 60 (95)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCHHH---------HHHHHHHH----HC-----CCCHH----HHHHHcCC
Confidence 35556666789999999999999999999998433 33333333 11 01111 44445555
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCccChHhHHHHHHHHHHhcc
Q 003418 313 DPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCV 355 (821)
Q Consensus 313 d~e~a~e~hk~iYr~kL~q~vs~~~lsded~~~L~~lr~lL~I 355 (821)
| +.+.++ |+. +++-=+..|..+..+|..|..-|++
T Consensus 61 ~-~~a~~~----y~~---s~~~~d~~s~aE~~~L~~la~aLgl 95 (95)
T cd07178 61 P-ELAAEV----YAA---SLLAIDPDTFAERAYLDELAAALGL 95 (95)
T ss_pred H-HHHHHH----HHH---HHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 5 555554 733 3333239999999999999999875
No 19
>cd07178 terB_like_YebE tellurium resistance terB-like protein, subgroup 3. This family includes several uncharacterized bacterial proteins including an Escherichia coli protein called YebE. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=68.74 E-value=93 Score=28.79 Aligned_cols=93 Identities=16% Similarity=0.267 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchhhhhc
Q 003418 587 FRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMI 666 (821)
Q Consensus 587 yrqql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L~~~i 666 (821)
.|-.+.-+-+||..|++....+..+-..++++++. +..+. ..+..+ ++++++..- -=
T Consensus 3 lrami~aAkADG~id~~E~~~I~~~~~~~~~~~~~---------~~~~~----~~l~~p-~~~~~la~~---------~~ 59 (95)
T cd07178 3 LRAMIAAAKADGHIDEAERARILGELGEAGLDAEE---------RAFLE----AELAAP-LDPDALAAA---------VP 59 (95)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCHHH---------HHHHH----HHHHCC-CCHHHHHHH---------cC
Confidence 35667778899999999999999999999999642 22222 255666 466644332 12
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhcCC
Q 003418 667 SESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSI 705 (821)
Q Consensus 667 ~~~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L~L 705 (821)
+...+.++|...+--+ |..++-+.+++..+...|||
T Consensus 60 ~~~~a~~~y~~s~~~~---d~~s~aE~~~L~~la~aLgl 95 (95)
T cd07178 60 DPELAAEVYAASLLAI---DPDTFAERAYLDELAAALGL 95 (95)
T ss_pred CHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhCc
Confidence 2367777888877655 45544555999999999986
No 20
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=64.02 E-value=31 Score=30.66 Aligned_cols=72 Identities=25% Similarity=0.363 Sum_probs=48.6
Q ss_pred HHhhhhhcCCChHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH--HHHHHHHHH
Q 003418 561 LSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNI--TTTKMAAAI 638 (821)
Q Consensus 561 L~qL~~ILGL~~kE~~~Ih~~va~~ayrqql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~i--y~~Kl~~~i 638 (821)
+++..-++|.+..++..+.. ++.|++++|.+..++...+. +. +|+ ....+-+.. +...+..
T Consensus 1 ~~~a~~~~G~s~e~~~~~~~---------ql~Q~~~~Gkv~~ee~n~~~---e~--~p~-~~~~lAk~~G~t~~~l~~-- 63 (75)
T TIGR02675 1 INDAGAASGASAEEADGALI---------QLSQMLASGKLRGEEINSLL---EA--LPG-ALQALAKAMGVTRGELRK-- 63 (75)
T ss_pred CchHHHHhCCCHHHHHHHHH---------HHHHHHHcCcccHHHHHHHH---HH--hHH-HHHHHHHHhCCCHHHHHH--
Confidence 36677889999998887654 67899999999998876664 33 443 333443333 3334444
Q ss_pred HHHHhcCCCCHHH
Q 003418 639 ETAVAQGKLNIKQ 651 (821)
Q Consensus 639 e~~~~~g~Lt~~~ 651 (821)
.+.+|+||.++
T Consensus 64 --~~~~Gkit~~~ 74 (75)
T TIGR02675 64 --MLSDGKLTADV 74 (75)
T ss_pred --HHHCCCCcccc
Confidence 77888888765
No 21
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=61.47 E-value=1.6e+02 Score=30.91 Aligned_cols=107 Identities=11% Similarity=0.235 Sum_probs=79.1
Q ss_pred HHHhHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcc
Q 003418 580 RGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEAS 659 (821)
Q Consensus 580 ~~va~~ayrqql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~g 659 (821)
..-+..+.|-.+.-+-+||.+|+++...+...-.+++++++.-.-+. .-++.+ ++++++..
T Consensus 76 ~~~a~lllrAMIaAAkADG~ID~~Er~~I~~~l~~~g~d~e~~~~l~-------------~eL~~P-~d~~~la~----- 136 (188)
T PF04391_consen 76 EAHARLLLRAMIAAAKADGHIDEEERQRIEGALQELGLDAEERAWLQ-------------AELAAP-LDPDALAA----- 136 (188)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHH-------------HHHhCC-CCHHHHHH-----
Confidence 34456678888899999999999999999888889999988544332 344444 56666533
Q ss_pred chhhhhc-cHHHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhcCCCHHHHHHH
Q 003418 660 VDLDNMI-SESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRV 713 (821)
Q Consensus 660 v~L~~~i-~~~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L~L~~ekAk~I 713 (821)
.+ +++.+..+|....- --..+++-+-..+..+...|+|+++....|
T Consensus 137 -----~v~~~e~A~evY~aS~l---aid~d~~~Er~YL~~LA~aL~L~~~lv~~l 183 (188)
T PF04391_consen 137 -----AVTDPEQAAEVYLASLL---AIDVDTFAERAYLDELAQALGLDPDLVAQL 183 (188)
T ss_pred -----hCCCHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 23 77888888877632 223556666799999999999999987765
No 22
>COG3793 TerB Tellurite resistance protein [Inorganic ion transport and metabolism]
Probab=58.63 E-value=20 Score=36.04 Aligned_cols=78 Identities=22% Similarity=0.330 Sum_probs=56.3
Q ss_pred CCcccHHHHHHHHHHhhhcccccccCCCcccccccCchHHHHHHhhhhhcCCChHHHHHHHHHH--hHHHHHHHHHHHhh
Q 003418 519 LPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGL--AEQAFRQQAEVILA 596 (821)
Q Consensus 519 ~~~~d~~~LYr~YL~~clsg~~~~~p~g~~i~~~kdd~e~~~L~qL~~ILGL~~kE~~~Ih~~v--a~~ayrqql~~~L~ 596 (821)
++..++..+|.++.. |+.-++ ++..-.-+ ++|+.+..+- ++.+.+--+-.+-+
T Consensus 62 f~~~~i~~~~~~~~~-~~~~d~----------------~~gk~ea~--------~~I~~lk~d~e~Ae~vL~vAv~VA~a 116 (144)
T COG3793 62 FDSNEINEIFETLVG-SFDTDF----------------EIGKREAM--------KEIEDLKHDTEAAEDVLRVAVAVAEA 116 (144)
T ss_pred ccHHHHHHHHHHHHH-Hhhhhh----------------hhhHHHHH--------HHHHHhcCChHHHHHHHHHHHHHhhc
Confidence 456688889999888 774322 21111111 3444454433 77888888888999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCHHH
Q 003418 597 DGQLTKARIEQLNEVQKQVGLPSEY 621 (821)
Q Consensus 597 ~G~Ld~a~a~~L~~Iq~~Lgl~~e~ 621 (821)
||.+++.+-+.|.+||.-|||+|..
T Consensus 117 DG~~d~~E~avl~eI~~aLGL~p~~ 141 (144)
T COG3793 117 DGEFEAEERAVLREIAGALGLSPAE 141 (144)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHh
Confidence 9999999999999999999999864
No 23
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=52.18 E-value=3.7e+02 Score=29.79 Aligned_cols=170 Identities=16% Similarity=0.272 Sum_probs=114.2
Q ss_pred HHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHhccchh
Q 003418 585 QAFRQQAEVILAD-GQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQG-KLNIKQIRELKEASVDL 662 (821)
Q Consensus 585 ~ayrqql~~~L~~-G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g-~Lt~~~V~eL~~~gv~L 662 (821)
..|+..+..+|.+ -..+-++.+.|=+.-++++++-.....+.+.+.+.+-......+...+ .+|.+++++|...|..+
T Consensus 116 e~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~~~l~~~~W~~~~~~~~~~~~~~tL~~l~~Ll~~g~~l 195 (335)
T PF08429_consen 116 EEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLRRRLEQLEWLEEAREILSDPDRLTLDELRELLDEGERL 195 (335)
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhhcC
Confidence 5699999999988 457777888898999999999999999999888877777666776666 49999999999888877
Q ss_pred hh----h----c-cHHHHHHHHHHHHHHHhhcCCCCCch-HHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003418 663 DN----M----I-SESLRENLFKKTVDEIFSSGTGEFDA-EEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSL 732 (821)
Q Consensus 663 ~~----~----i-~~~~r~~lFkk~V~eaissGt~~~d~-~e~~ekl~~~L~L~~ekAk~Il~~~~~~r~~n~l~qAva~ 732 (821)
.. . + ..-..+.-+...+.+.|+....+++. +.++.++ ..+.++.+....+-. +-.+-+....++...
T Consensus 196 ~~~~~~~~~~~L~~~l~~~~~We~ka~~~L~~~~~~l~~Le~l~~~~-~~ipv~~~~~~~L~~--~l~kak~w~~~i~~l 272 (335)
T PF08429_consen 196 GIPSDEKLMAELQELLKQGEEWEEKAKELLSRPRVSLEQLEALLEEA-ENIPVSLPSLDKLKD--ALQKAKEWLRQIEEL 272 (335)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-hcCCCchHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 32 1 1 12233455778888888854444443 3555555 556666665443222 222333355555555
Q ss_pred HHh-hchhhHHHHHHHHhhccccCcC
Q 003418 733 LRQ-KNRQGVVSSLNDLLACDKAVPA 757 (821)
Q Consensus 733 lrq-~~~~e~vk~L~kLl~~~~~vps 757 (821)
+.+ +..--.+.+|++|+.-..-.|.
T Consensus 273 l~~~~~~~p~~~el~~l~~~~~~L~~ 298 (335)
T PF08429_consen 273 LEQNGSKRPTLDELEELVAESEELPV 298 (335)
T ss_pred hcccCCCCCcHHHHHHHHHHHhcCCC
Confidence 433 4445556677777766655554
No 24
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=51.10 E-value=3.6e+02 Score=31.08 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=83.7
Q ss_pred hcCCCC--ccccccCCCCCcccHHHHHHHHHHhhh-ccc--ccccCCCcccccccCchH-HHHHHhhhhhcCCCh-----
Q 003418 504 KMGKPG--QTEINLKDDLPERDRTDLYKTYLLYCL-TGE--VTKIPFGASITTKKDDSE-YVLLSQLGGILGLTT----- 572 (821)
Q Consensus 504 ~~g~~~--~~~itl~~d~~~~d~~~LYr~YL~~cl-sg~--~~~~p~g~~i~~~kdd~e-~~~L~qL~~ILGL~~----- 572 (821)
++++++ ..-+....-|.....+.+.-+||.+-+ |-+ ..+-|.|--|.-+|.+.| +..+..+.--|+|++
T Consensus 82 El~CPy~eLt~Gdi~~Rf~s~~a~~lLlsyL~SEl~tarmi~~~~p~~p~~~~ek~d~ev~q~i~~~~~~L~~~k~p~Ni 161 (465)
T KOG3973|consen 82 ELECPYEELTCGDIRTRFQSSSAKKLLLSYLDSELKTARMITRQRPESPEIVSEKRDLEVTQLIDSALRTLNFPKQPGNI 161 (465)
T ss_pred HcCCchHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccCCchHHHHHHHHHHHcCCCCCCCCc
Confidence 345554 223333345667788899999999887 443 357799999988888888 677788888899987
Q ss_pred ---HHHHHHHHHHhH---HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Q 003418 573 ---KEIVDVHRGLAE---QAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKI 625 (821)
Q Consensus 573 ---kE~~~Ih~~va~---~ayrqql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~ki 625 (821)
+-.+.|...+-. ++-.++...-|=+..|+++--..++.+|+.+.=+.+.-..+
T Consensus 162 n~~~lfe~i~~kl~~ai~kv~p~~~~~PLlKkpl~~a~w~~iE~~~~~~~~ey~~Rr~l 220 (465)
T KOG3973|consen 162 NEWKLFETIRQKLDGAIKKVSPSQRSHPLLKKPLDEATWPEIEKQCESFSREYYNRRLL 220 (465)
T ss_pred hHHHHHHHHHHHHHhHHhcCCHhhcCCchhcCcCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333445444444 44456665666678899999999999998876555544433
No 25
>PF10025 DUF2267: Uncharacterized conserved protein (DUF2267); InterPro: IPR018727 This entry contains proteins that have no known function. ; PDB: 2YSK_A.
Probab=47.89 E-value=83 Score=30.23 Aligned_cols=93 Identities=25% Similarity=0.364 Sum_probs=57.3
Q ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchhhhhccHHHHHHHHHHHHHHHh
Q 003418 605 IEQLNEVQKQVGL-PSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIF 683 (821)
Q Consensus 605 a~~L~~Iq~~Lgl-~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L~~~i~~~~r~~lFkk~V~eai 683 (821)
-+||..+++..|+ +.+.|..+.+ -.|.. -..+|++++...|. .-+|..+++-++. ....
T Consensus 3 ~~fl~~V~~~~~l~~~~~A~~a~~----avL~~------L~~rL~~~ea~~La-------~qLP~~l~~~l~~---gw~~ 62 (125)
T PF10025_consen 3 DEFLDEVRERAGLPDREEAYRATR----AVLHT------LRERLPPEEAADLA-------AQLPMELRGILYE---GWRP 62 (125)
T ss_dssp HHHHHHHHHHHT---HHHHHHHHH----HHHHH------HHTTS-HHHHHHHH-------TTS-HHHHHHHHT---T--T
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHH----HHHHH------HHHHCCHHHHHHHH-------HhCCHHHHHHHHh---cccC
Confidence 3689999999999 5555554433 23322 23469999988765 3468888888876 3445
Q ss_pred hcCCCCCchHHHHhhhhhhcCCCHH-HHHHHHHHH
Q 003418 684 SSGTGEFDAEEVYEKIPADLSINAE-KARRVVHEL 717 (821)
Q Consensus 684 ssGt~~~d~~e~~ekl~~~L~L~~e-kAk~Il~~~ 717 (821)
..+.+.|+.++++..+...++.+.+ .|...+...
T Consensus 63 ~~~~~~~~~~eF~~rVa~~~~~~~~~~a~~~~~aV 97 (125)
T PF10025_consen 63 SEGPGRFDLDEFLARVAERLGGADEDDAERLARAV 97 (125)
T ss_dssp TS-----SHHHHHHHHHHTSEETTEE-HHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHccCCCcccHHHHHHHH
Confidence 5566669999999999998888777 666544443
No 26
>PF07216 LcrG: LcrG protein; InterPro: IPR009863 This family consists of several bacterial LcrG proteins. Yersiniae are equipped with the Yop virulon, an apparatus that allows extracellular bacteria to deliver toxic Yop proteins inside the host cell cytosol in order to sabotage the communication networks of the host cell or even to cause cell death. LcrG is a component of the Yop virulon involved in the regulation of secretion of the Yops []. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the prot ein is believed to make a 1:1 complex with PcrV (LcrV) []. Mutations in LcrG cause premature secretion of effector proteins into the medium [].
Probab=46.43 E-value=44 Score=31.17 Aligned_cols=45 Identities=22% Similarity=0.317 Sum_probs=34.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 003418 589 QQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAA 636 (821)
Q Consensus 589 qql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~ 636 (821)
++++.+++| .+.+.+.|++|++.||+.|..+..+..+.-.+-++.
T Consensus 12 ~~AE~AI~d---sd~R~~llqEm~~gLg~~p~ag~lLf~~~~~~~~k~ 56 (93)
T PF07216_consen 12 EQAELAIRD---SDHRNDLLQEMLEGLGLGPVAGELLFGGSSPELMKQ 56 (93)
T ss_pred HHHHHHHHh---hHHHHHHHHHHHHhcCCChhHHHHHhcCCCHHHHHH
Confidence 456777766 455899999999999999999999988754444444
No 27
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=44.89 E-value=62 Score=32.87 Aligned_cols=58 Identities=14% Similarity=0.232 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHcCCChhhHHHHHHHHhhHHHHHHH
Q 003418 227 DDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRL 284 (821)
Q Consensus 227 ~elk~lY~~yL~~~l~~g~l~~~~~~~L~~LknilGL~~~ea~~ih~ev~~~lyR~rL 284 (821)
.....+++.=+....+...++.++.+.|.+|-+.||-+|.|-..-|++.+..-.+..+
T Consensus 83 ~~~~~~w~~~~~~~~~~~~L~~~d~e~L~~lg~~LG~~D~~~Q~k~i~l~~~~L~~~~ 140 (170)
T PF09548_consen 83 ESFAEAWEEAVEKLLKESALKKEDKEILLELGKSLGYSDREMQEKHIELYLEQLEQQL 140 (170)
T ss_pred CCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888999999999999999999999999999999998888887777
No 28
>TIGR02573 LcrG_PcrG type III secretion protein LcrG. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the protein is believed to make a 1:1 complex with PcrV (LcrV). Mutants of LcrG cause premature secretion of effector proteins into the medium.
Probab=44.47 E-value=58 Score=30.24 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=36.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Q 003418 589 QQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAA 637 (821)
Q Consensus 589 qql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ 637 (821)
++++.+++| ++.+.+.|++|+..||+.|+.|..+.-+.-.+-++.+
T Consensus 9 ~~AElAI~d---sd~R~~llqEm~~gLgl~p~ag~~Lf~~~~~e~~~~A 54 (90)
T TIGR02573 9 QAAELAIRD---SDERNDLLQEMWQGLGLGPVAGEVLFGGLNAELMQHA 54 (90)
T ss_pred HHHHHHHhc---hHHHHHHHHHHHHHcCCChHHHHHHHcCCCHHHHHHH
Confidence 466777766 4569999999999999999999999876666555553
No 29
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=43.60 E-value=2.1e+02 Score=35.22 Aligned_cols=188 Identities=19% Similarity=0.233 Sum_probs=105.8
Q ss_pred ccccCCcceecccccCCCCChhHHHHHHHHHHhc-------ccCCCCCChHHHHHHHHHHHHc------CCChhhHHHHH
Q 003418 206 FARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTD-------SLSGGRMEESKLAALNQLRNIF------GLGKRESEAII 272 (821)
Q Consensus 206 f~~g~gpvsl~G~~~~~~~~~~elk~lY~~yL~~-------~l~~g~l~~~~~~~L~~Lknil------GL~~~ea~~ih 272 (821)
=..|+|-||+ +..+++.|+|.=.+..|++ |+|=|+-++...++|+-|...| -+.+.|+
T Consensus 694 rpdgigtvtv-----eekerfeeikerlrvllenqithfrycfpfgrpegalkatlsllervlmkdivtpvp~eev---- 764 (1218)
T KOG3543|consen 694 RPDGIGTVTV-----EEKERFEEIKERLRVLLENQITHFRYCFPFGRPEGALKATLSLLERVLMKDIVTPVPPEEV---- 764 (1218)
T ss_pred CCCCcceeee-----hhHHHHHHHHHHHHHHHHhhhhceEeeccCCCcchHHHHHHHHHHHHHHHhcCCCCCHHHH----
Confidence 3679999996 4457899999888888876 4577888999999999888776 1222222
Q ss_pred HHHhhHHHHHHHHhhhcCCcchh---ccchHHHHHHHhhhhCCCHHHHHHHHHHHHHHHHHHHhhcCccChHhHHHHHHH
Q 003418 273 VDVTSKVYRKRLGQAVSGGALEA---ADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRL 349 (821)
Q Consensus 273 ~ev~~~lyR~rL~e~v~sg~le~---a~~ka~~lq~lc~~L~fd~e~a~e~hk~iYr~kL~q~vs~~~lsded~~~L~~l 349 (821)
..+.|+-| +...|-. -...|+. .+..+++...|+.+..-|--. +-|+.-..=.++-...--.|
T Consensus 765 ----k~virkcl----e~aalvnytrl~eyaki----ee~m~~a~~~a~kled~irla--elcievlqqneehhgeafaw 830 (1218)
T KOG3543|consen 765 ----KAVIRKCL----EDAALVNYTRLCEYAKI----EERMGIAVSPAQKLEDMIRLA--ELCIEVLQQNEEHHGEAFAW 830 (1218)
T ss_pred ----HHHHHHHH----HHHHhhhHHHHHHHHHH----HHHhccccCHHHHHHHHHHHH--HHHHHHHHhhhhhcchHHHh
Confidence 22333333 1111000 0111222 223444444444444433311 11111111111111111122
Q ss_pred HHHhccCHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCChHHHH--HHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHH
Q 003418 350 RVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKK--AVRKAAHGLRLTR-EAAMSIASKAVRRIFVIYIK 426 (821)
Q Consensus 350 r~lL~I~~~~V~~ah~d~~g~lf~k~V~eAl~~g~~g~~~e~~~--~lrka~~~LrLsd-E~A~~if~~avrk~~~~~I~ 426 (821)
|+++-.-|.+++-+||.--..+|+.. -.-| .|. .|-..-..+-+++ -.+.-+|.++.+..|.|.|-
T Consensus 831 -------wsdll~ehae~fwslfsvdmdsalev--qp~d--swdsfplfqllndflr~d~~lcngkfhkhlq~~f~plvv 899 (1218)
T KOG3543|consen 831 -------WSDLLSEHAEIFWSLFSVDMDSALEV--QPHD--SWDSFPLFQLLNDFLRSDSSLCNGKFHKHLQQQFQPLVV 899 (1218)
T ss_pred -------HHHHHHHHHHHHHHHHhcccchhccc--CCCC--ccccchHHHHHHHHHhhhhhcccchhHHHHHHHhhhHHH
Confidence 46677889999999999999998865 2222 232 2344444444444 45667899999999999775
Q ss_pred H
Q 003418 427 R 427 (821)
Q Consensus 427 ~ 427 (821)
+
T Consensus 900 r 900 (1218)
T KOG3543|consen 900 R 900 (1218)
T ss_pred H
Confidence 4
No 30
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=43.00 E-value=5.1e+02 Score=28.88 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=63.4
Q ss_pred ChhHHHHHHHHHHhcccCCCC-CChHHHH-------------HHHHHHHHcCCChhhHHHHHHHHhhHHHHHHHHhhhcC
Q 003418 225 KMDDLKLLYRAYVTDSLSGGR-MEESKLA-------------ALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSG 290 (821)
Q Consensus 225 ~~~elk~lY~~yL~~~l~~g~-l~~~~~~-------------~L~~LknilGL~~~ea~~ih~ev~~~lyR~rL~e~v~s 290 (821)
-.+.-..||+..+...+..|+ ++.=-.+ .|..+..+++.+..+....+ |...+ .
T Consensus 117 v~e~A~~iyr~a~~~~l~rGRsie~v~AA~iY~acR~~~~prtl~eIa~a~~V~~kei~rty--------r~~~~----~ 184 (285)
T COG1405 117 VRETAARIYRKAVDKGLLRGRSIESVAAACIYAACRINGVPRTLDEIAKALGVSKKEIGRTY--------RLLVR----E 184 (285)
T ss_pred HHHHHHHHHHHHhhcCCCcCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHCCCHHHHHHHH--------HHHHH----h
Confidence 356778899999999997775 3332222 35677777887775554444 42221 1
Q ss_pred Ccchhc-cchHHHHHHHhhhhCCCHHHHHHHHHHHHHHHHHHHhh
Q 003418 291 GALEAA-DSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVA 334 (821)
Q Consensus 291 g~le~a-~~ka~~lq~lc~~L~fd~e~a~e~hk~iYr~kL~q~vs 334 (821)
..+... .++.+++.++|+.|++|+++.+.-.+.+=+.+-.-+.+
T Consensus 185 L~l~~~~~~p~~yi~rf~s~L~l~~~v~~~a~ei~~~~~~~g~~~ 229 (285)
T COG1405 185 LKLKIPPVDPSDYIPRFASKLGLSDEVRRKAIEIVKKAKRAGLTA 229 (285)
T ss_pred cCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCccc
Confidence 122221 46789999999999999998887777665444444444
No 31
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=38.60 E-value=2.7e+02 Score=24.42 Aligned_cols=98 Identities=15% Similarity=0.267 Sum_probs=64.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchhhhhccH
Q 003418 590 QAEVILADGQLTKARIEQLNEVQKQVGL-PSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISE 668 (821)
Q Consensus 590 ql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl-~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L~~~i~~ 668 (821)
.+..+-+||.++.+..+.+.++-.+++. ++.....+..-+.... .+ ..++..+..+.. ..-+.
T Consensus 6 l~~~a~aDG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~------~~~~~ 69 (104)
T cd07177 6 LLAAAKADGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPL---------AE-AGDLAALAALLK------ELPDA 69 (104)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH---------Hh-cccHHHHHHHHH------HhCCH
Confidence 3455666999999999999988888765 6665555544333221 11 123333333221 11234
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhc
Q 003418 669 SLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADL 703 (821)
Q Consensus 669 ~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L 703 (821)
+.|..+++..+.=+.++|..+-.+..+++++...|
T Consensus 70 ~~r~~~l~~~~~ia~aDG~~~~~E~~~l~~l~~~L 104 (104)
T cd07177 70 ELREALLAALWEVALADGELDPEERALLRRLADAL 104 (104)
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHhhC
Confidence 89999999999999999888766668888877644
No 32
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=37.08 E-value=4.5e+02 Score=29.26 Aligned_cols=97 Identities=15% Similarity=0.248 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHhcccCCCCCChHHH--------------HHHHHHHHHcCCChhhHHHHHHHHhhHHHHHHHHhhhcCC
Q 003418 226 MDDLKLLYRAYVTDSLSGGRMEESKL--------------AALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGG 291 (821)
Q Consensus 226 ~~elk~lY~~yL~~~l~~g~l~~~~~--------------~~L~~LknilGL~~~ea~~ih~ev~~~lyR~rL~e~v~sg 291 (821)
.+.-+.||+.+....+-.|+=-..-. -.|..+..+++.+..+...++..+.+. | ..
T Consensus 143 ~e~A~~iyk~~~~~~~~rgrs~~~i~AAclYiACR~~~~prtl~eI~~~~~v~~k~i~~~~~~l~k~-----L----~~- 212 (310)
T PRK00423 143 REEAAVIYRKAVEKGLIRGRSIEGVVAAALYAACRRCKVPRTLDEIAEVSRVSRKEIGRCYRFLLRE-----L----NL- 212 (310)
T ss_pred HHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHHHHHHHH-----h----CC-
Confidence 34556666666665553332111111 135566777788877665543333321 1 11
Q ss_pred cchhccchHHHHHHHhhhhCCCHHHHHHHHHHHHHHHHHHHhh
Q 003418 292 ALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVA 334 (821)
Q Consensus 292 ~le~a~~ka~~lq~lc~~L~fd~e~a~e~hk~iYr~kL~q~vs 334 (821)
++-. .++.+++.++|+.|+++.++. ..-..+|++-...-+.
T Consensus 213 ~~~~-~~p~~~i~r~~~~L~L~~~v~-~~A~~i~~~a~~~~l~ 253 (310)
T PRK00423 213 KLPP-TDPIDYVPRFASELGLSGEVQ-KKAIEILQKAKEKGLT 253 (310)
T ss_pred CCCC-CCHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHhcCcc
Confidence 1222 558899999999999998754 4566777655544443
No 33
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.57 E-value=2.6e+02 Score=28.40 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=67.1
Q ss_pred HHHHHhhcCCCCHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchhhhhccH
Q 003418 590 QAEVILADGQLTKA-RIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISE 668 (821)
Q Consensus 590 ql~~~L~~G~Ld~a-~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L~~~i~~ 668 (821)
..+++.+||...+. ..+|..=+++.+|+|++....+++-...--..+ ..|-+.-.+|-..++.
T Consensus 35 lf~Vm~ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea----------------~d~y~fts~l~r~Ld~ 98 (148)
T COG4103 35 LFHVMEADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEA----------------IDLYSFTSVLKRHLDE 98 (148)
T ss_pred HHHHHhcccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHH----------------HHHHHHHHHHHHhcCH
Confidence 44678899998777 556666667789999999988887553321111 0111111222334555
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhcCCCHHHH
Q 003418 669 SLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKA 710 (821)
Q Consensus 669 ~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L~L~~ekA 710 (821)
++|-.+-+---+=+-++|+..=-+..++.++++=||++.+.-
T Consensus 99 e~R~eli~~mweIa~ADg~l~e~Ed~vi~RvAeLLgV~~~d~ 140 (148)
T COG4103 99 EQRLELIGLMWEIAYADGELDESEDHVIWRVAELLGVSPEDR 140 (148)
T ss_pred HHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHhCCCHHHH
Confidence 555555555555566777775555689999999999998754
No 34
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=36.34 E-value=1e+02 Score=31.55 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHcCCChhhHHHHHHHHhhHHHHHHH
Q 003418 228 DLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRL 284 (821)
Q Consensus 228 elk~lY~~yL~~~l~~g~l~~~~~~~L~~LknilGL~~~ea~~ih~ev~~~lyR~rL 284 (821)
...++++.=+.+..+...++.++.+-|.+|-..||-+|+|...=|++.+..-++..+
T Consensus 84 s~~~~w~~~~~~~~~~~~L~~~d~eiL~~lG~~LG~~D~e~Q~k~i~L~~~~L~~~~ 140 (170)
T TIGR02833 84 TVYEAWKKALNEVWKQTALQKSEKEILLQFGKTLGESDREGQQKHINLTLEHLERQL 140 (170)
T ss_pred CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHHHHHH
Confidence 455666666777778889999999999999999999999999999998877777766
No 35
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=35.80 E-value=84 Score=32.11 Aligned_cols=58 Identities=9% Similarity=0.176 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHcCCChhhHHHHHHHHhhHHHHHHH
Q 003418 227 DDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRL 284 (821)
Q Consensus 227 ~elk~lY~~yL~~~l~~g~l~~~~~~~L~~LknilGL~~~ea~~ih~ev~~~lyR~rL 284 (821)
....++++.=+.+..+...++.++.+-|.+|-..||-+|+|-..=|++.+..-.+..+
T Consensus 84 ~s~~eaw~~~~~~~~~~~~L~~~d~eiL~~lg~~LG~~D~e~Q~k~i~L~~e~L~~~~ 141 (171)
T PRK08307 84 ETAYEAWEKALEENWKNTALKKEDIEILLQFGKTLGQSDREGQQKHIRLALEHLEREE 141 (171)
T ss_pred CCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777889999999999999999999999999999998877777766
No 36
>cd04755 Commd7 COMM_Domain containing protein 7. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=35.41 E-value=2.1e+02 Score=29.86 Aligned_cols=104 Identities=17% Similarity=0.155 Sum_probs=67.8
Q ss_pred hHHHHHHhhhhhcCCChHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 003418 556 SEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMA 635 (821)
Q Consensus 556 ~e~~~L~qL~~ILGL~~kE~~~Ih~~va~~ayrqql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~ 635 (821)
.-+..+..|+..+|++..++..|...+. -++++-+..- ++ .+.|.+=-++||+|.++|. .+...|+....
T Consensus 31 ~~~~~~~ef~~~~~~~~~dlk~vi~~l~-fi~~~A~k~n-----v~---~~~L~~eL~~lgL~~eka~-~~~~~w~~~~~ 100 (180)
T cd04755 31 RLLNQLDEFAGENGISLGPLKNIVKSIL-LVPNGALKRN-----LT---AEQLREDLIQLGLSEEKAS-YFSEQWKQHYS 100 (180)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHcC-----CC---HHHHHHHHHHcCCCHHHHH-HHHHHHHHhHH
Confidence 3466666689999999998888877653 3444433333 22 3345444489999999999 78888888877
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhccchhhhhccHHHHHH
Q 003418 636 AAIETAVAQGKLNIKQIRELKEASVDLDNMISESLREN 673 (821)
Q Consensus 636 ~~ie~~~~~g~Lt~~~V~eL~~~gv~L~~~i~~~~r~~ 673 (821)
...+.+ .+..|++-+.. .++|.+.=-++.+.|.+
T Consensus 101 ~L~~~~-~~~tL~~~qL~---d~~Wr~~~~~sSS~~~~ 134 (180)
T cd04755 101 TLSRSA-VGQTLMVNQLV---DMEWKFGVTAGSSELQK 134 (180)
T ss_pred HHHHHH-HHcccCccccc---cccceeeeEecchhhhh
Confidence 755555 55556665544 45566644455555544
No 37
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=33.21 E-value=2.6e+02 Score=23.93 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003418 599 QLTKARIEQLNEVQKQVGLPSEYAQKIIKNI 629 (821)
Q Consensus 599 ~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~i 629 (821)
.|+...++.|..+++.+|+|++.....++.+
T Consensus 12 ~ls~~e~~~i~~~~~~~~~~~evI~~ai~~a 42 (73)
T TIGR01446 12 MLSPFEMEDLKYWLDEFGNSPELIKEALKEA 42 (73)
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6999999999999999999999777666554
No 38
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=32.78 E-value=75 Score=26.75 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=41.3
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 003418 588 RQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKM 634 (821)
Q Consensus 588 rqql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl 634 (821)
+.-+..|+..|.++--+-.-|.+|-+.||+++..+.+-++.+.++.+
T Consensus 6 ~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 6 REILKAAYELGYFDVPRRITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred HHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 45577889999999998889999999999999999999998877654
No 39
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=30.86 E-value=7.9e+02 Score=27.43 Aligned_cols=99 Identities=19% Similarity=0.294 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHcCCCHHH---HHHHHHHHHHHH----------HHHHHHHHHhcC--CCCHHHHHHHHhccchhhhhccH
Q 003418 604 RIEQLNEVQKQVGLPSEY---AQKIIKNITTTK----------MAAAIETAVAQG--KLNIKQIRELKEASVDLDNMISE 668 (821)
Q Consensus 604 ~a~~L~~Iq~~Lgl~~e~---a~kiik~iy~~K----------l~~~ie~~~~~g--~Lt~~~V~eL~~~gv~L~~~i~~ 668 (821)
-...|..++..|++|..+ |..|.+..+.++ +++.+-.+.... -.|-+++....+ ++.
T Consensus 100 a~~~l~~~~~~l~LP~~v~e~A~~iyr~a~~~~l~rGRsie~v~AA~iY~acR~~~~prtl~eIa~a~~--------V~~ 171 (285)
T COG1405 100 ALEELERIASALGLPESVRETAARIYRKAVDKGLLRGRSIESVAAACIYAACRINGVPRTLDEIAKALG--------VSK 171 (285)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCcCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHC--------CCH
Confidence 467799999999999754 344444333322 222121111111 135555554443 555
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhcCCCHHHHH
Q 003418 669 SLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKAR 711 (821)
Q Consensus 669 ~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L~L~~ekAk 711 (821)
..-++.|++.+.+ +.-...+.++.+.+.+...+|||+.++-+
T Consensus 172 kei~rtyr~~~~~-L~l~~~~~~p~~yi~rf~s~L~l~~~v~~ 213 (285)
T COG1405 172 KEIGRTYRLLVRE-LKLKIPPVDPSDYIPRFASKLGLSDEVRR 213 (285)
T ss_pred HHHHHHHHHHHHh-cCCCCCCCCHHHHHHHHHHHcCCCHHHHH
Confidence 7778888855544 44457778999999999999999955443
No 40
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=30.65 E-value=3.2e+02 Score=29.74 Aligned_cols=66 Identities=18% Similarity=0.337 Sum_probs=50.2
Q ss_pred HcCCChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhccchHHHHHHHhhhhCCCHHHHHHHHHHHHHHHH
Q 003418 260 IFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKL 329 (821)
Q Consensus 260 ilGL~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a~~ka~~lq~lc~~L~fd~e~a~e~hk~iYr~kL 329 (821)
++|-+..++..-.+.++-.++.+.|. ..++...-+...+++.+++.+++|++..+.+.+.+++...
T Consensus 118 iig~~~~~~daEvi~l~~e~l~~~l~----~~~~~i~i~h~~i~~~il~~~gl~~~~~~~l~~~l~~~~~ 183 (311)
T PF13393_consen 118 IIGSSSLEADAEVIKLADEILDRELG----LENFTIRINHTGILDAILEHLGLPEDLRRELLEALDKKDL 183 (311)
T ss_dssp EESSSSHHHHHHHHHHHHHHHHHHHT----TTSEEEEEEEHHHHHHHHHHTTHHHHHHHHHHHHHHHTHH
T ss_pred EECCCCHHHHHHHHHHHHHHHHhhcC----CCCcEEEEcCchhhHHHHhhcCCChhhhhhhhhheecccc
Confidence 56888888888888888888864462 2334444455789999999999999999999999886543
No 41
>PHA01351 putative minor structural protein
Probab=30.44 E-value=1.2e+03 Score=29.48 Aligned_cols=102 Identities=20% Similarity=0.314 Sum_probs=67.6
Q ss_pred HHcCCCHHHHHHHHHHHHHHHH----HHHHHHHHhcCCCCHHHHH-HHHhccchhh---hhc---cHHHHHHHHHHHHHH
Q 003418 613 KQVGLPSEYAQKIIKNITTTKM----AAAIETAVAQGKLNIKQIR-ELKEASVDLD---NMI---SESLRENLFKKTVDE 681 (821)
Q Consensus 613 ~~Lgl~~e~a~kiik~iy~~Kl----~~~ie~~~~~g~Lt~~~V~-eL~~~gv~L~---~~i---~~~~r~~lFkk~V~e 681 (821)
++||+++...+.++.+-|..-+ ...+|++...|-++.++.. +|+.+|.+=. ..+ +...--.++=|-+.+
T Consensus 555 KkLg~s~alIqaiI~EyftepL~KlQLnvyEsLakKGY~d~qq~ksElk~LGidKe~i~klin~Y~ql~qt~~eIkYIqe 634 (1070)
T PHA01351 555 KHLGFDSAIISALIYENQVEQLIKFQLNNIESLAKKGYLSLDEIKKQFKAIGIIKEYEDAFINFYNQELQISAFLTILKS 634 (1070)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999998877322 2457889999999998865 5667776531 111 111122334444555
Q ss_pred HhhcCCCCCchHHHHhhhhhhcCCCHHHHHHHHHHH
Q 003418 682 IFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHEL 717 (821)
Q Consensus 682 aissGt~~~d~~e~~ekl~~~L~L~~ekAk~Il~~~ 717 (821)
-+..=.+ ++.+...++. -||++++-|..|+..-
T Consensus 635 ~LK~f~I--spkeAitELK-KL~ISdaLAn~IV~eY 667 (1070)
T PHA01351 635 QLRQFQI--DPKEAETELK-KLNINEYLANQIIQEE 667 (1070)
T ss_pred HHHHccc--CHHHHHHHHH-HcCchHHHHHHHHHHH
Confidence 5555444 5566666664 4899999998888766
No 42
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair]
Probab=30.10 E-value=2e+02 Score=32.67 Aligned_cols=97 Identities=24% Similarity=0.370 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhHHHHhhhcCCC-------cccccccCCcceecccccCCCCChhHH
Q 003418 157 EENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPN-------ADRFARGVGPVSLVGGEFDGDRKMDDL 229 (821)
Q Consensus 157 ~~~i~~al~~~k~r~~~~~~~~~v~~ev~~vL~~n~~L~~l~~~~d-------~~~f~~g~gpvsl~G~~~~~~~~~~el 229 (821)
-..+..|+++|.-.- +|-.+-...++|......+++.|- +.. .||+||-+
T Consensus 12 N~~~~~aleiLa~~~-------ev~g~~~r~~~y~~Aasvlk~~p~~I~S~~ea~~-lP~iG~ki--------------- 68 (353)
T KOG2534|consen 12 NQIFTEALEILAEAY-------EVEGEEDRARAYRRAASVLKSLPFPITSGEEAEK-LPGIGPKI--------------- 68 (353)
T ss_pred cHHHHHHHHHHHHhh-------cccccHHHHHHHHHHHHHHHhCCCCcccHHHhcC-CCCCCHHH---------------
Confidence 356778888887653 455677788999999999988553 223 56666643
Q ss_pred HHHHHHHHhcccCCC---CCChHHHHHHHHHHHHcCCChhhHHHHHHHHhhHHHHHHH
Q 003418 230 KLLYRAYVTDSLSGG---RMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRL 284 (821)
Q Consensus 230 k~lY~~yL~~~l~~g---~l~~~~~~~L~~LknilGL~~~ea~~ih~ev~~~lyR~rL 284 (821)
..+-..+|+...-.+ -..++-...|.-|.|+||+|..- +.+-||.-+
T Consensus 69 a~ki~EiletG~l~ele~v~~de~~~~lklFtnifGvG~kt--------A~~Wy~~Gf 118 (353)
T KOG2534|consen 69 AEKIQEILETGVLRELEAVRNDERSQSLKLFTNIFGVGLKT--------AEKWYREGF 118 (353)
T ss_pred HHHHHHHHHcCCchhHHHHhcchhHHHHHHHHHHhccCHHH--------HHHHHHhhh
Confidence 334444555554333 24456777899999999999654 456677665
No 43
>PF03280 Lipase_chap: Proteobacterial lipase chaperone protein; InterPro: IPR004961 The proteobacterial lipase chaperone is a lipase helper protein which may be involved in the folding of extracellular lipase during its passage through the periplasm [].; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016020 membrane; PDB: 2ES4_E.
Probab=30.04 E-value=6.5e+02 Score=26.18 Aligned_cols=116 Identities=19% Similarity=0.280 Sum_probs=71.5
Q ss_pred HHHHHHHH--H-HHhhcCCCCHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcc
Q 003418 584 EQAFRQQA--E-VILADGQLTKA-RIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEAS 659 (821)
Q Consensus 584 ~~ayrqql--~-~~L~~G~Ld~a-~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~g 659 (821)
+..|+++. . .+..+..|+.+ +...|+.+..+| |+..-........-..+.+....+-..| .|++++..++...
T Consensus 58 E~~~~~~~l~rl~I~~d~~Ls~~ek~~~l~~l~~~l--P~~~~~~~~~~~~~~~l~~~~~~l~~~g-~~~~~~~~~r~~~ 134 (195)
T PF03280_consen 58 ENAYDQYALARLAIAQDASLSDEEKQQRLAELLQQL--PEDLQEARRNAQLLQDLQQQTQELQAQG-ASEQELRAARAQL 134 (195)
T ss_dssp HHHHHHHHHHHHHHHT-TT--HHHHHHHHHHHCCCS---HHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhC--CHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHh
Confidence 45666665 2 34455778888 888999888775 6666555544445577777666676777 6999999999655
Q ss_pred chh----------hhhccHHHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhh
Q 003418 660 VDL----------DNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPAD 702 (821)
Q Consensus 660 v~L----------~~~i~~~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~ 702 (821)
|.- ...-.-..|-.-|...-..+..+|..+-+-+.-+..++..
T Consensus 135 vg~eaA~RL~~ld~~~~~w~~r~~~Y~~~r~~I~~~~ls~~~kq~~i~~Lr~~ 187 (195)
T PF03280_consen 135 VGPEAAQRLAQLDQQRAQWQQRLDSYLQERDQILNSGLSEEEKQQQIAQLRQQ 187 (195)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT---CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 554 2225566777778888777776666665555666655543
No 44
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=29.22 E-value=1.1e+03 Score=28.94 Aligned_cols=134 Identities=19% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH--------HHHHHhccchhhhh--------ccHH
Q 003418 606 EQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQ--------IRELKEASVDLDNM--------ISES 669 (821)
Q Consensus 606 ~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~--------V~eL~~~gv~L~~~--------i~~~ 669 (821)
+..+.+.+.+||+.+.|.++++.-+-+.... ++.. .+.+-- +.+|++-|+++++. +..-
T Consensus 458 ek~~r~~~eygLs~~LA~~~~~~~~~~~FEe----l~e~-~v~p~~~A~~L~~~~~~L~reg~~i~~l~~~~i~~~~~~~ 532 (631)
T COG2511 458 EKVERYVKEYGLSKELAEQLASDPRVDLFEE----LVEK-GVDPTLIASTLVNTLPELRREGVEIDNLDDEHIEELLRLV 532 (631)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhhhHHHHHH----HHHc-CCCHHHHHHHHHHHHHHHHhcCCccccCCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhc--CCCCCchHHHHhhhhhhcCCCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhh
Q 003418 670 LRENLFKKTVDEIFSS--GTGEFDAEEVYEKIPADLSINAEKARRVVHELA-----------RNRLSNSLIQAVSLLRQK 736 (821)
Q Consensus 670 ~r~~lFkk~V~eaiss--Gt~~~d~~e~~ekl~~~L~L~~ekAk~Il~~~~-----------~~r~~n~l~qAva~lrq~ 736 (821)
..+.+=|..+.+++.. -..+.+.+++.+++-- ..|+.|+..+|+.+++ -..+.-.|-++++.+|.+
T Consensus 533 ~~g~iake~iee~l~~l~~~p~~~~~e~~~~~gL-~~ls~eEve~iI~eii~~~~d~i~~rg~~a~g~lmg~~M~~~rg~ 611 (631)
T COG2511 533 SEGKIAKEAIEEILKALAENPGKDAAEIAEKLGL-KELSEEEVEKIIDEIIESNLDVIKERGMGAMGLLMGRVMAKLRGR 611 (631)
T ss_pred hcccchHHHHHHHHHHHHhCCCCCHHHHHHHhcc-ccCCHHHHHHHHHHHHHhhHHHHHHhchhhHHHHHHHHHHHhhcc
Q ss_pred chhhHHHHH
Q 003418 737 NRQGVVSSL 745 (821)
Q Consensus 737 ~~~e~vk~L 745 (821)
=....|.++
T Consensus 612 aDgk~v~e~ 620 (631)
T COG2511 612 ADGKLVSEI 620 (631)
T ss_pred CCcHHHHHH
No 45
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=28.48 E-value=3.8e+02 Score=28.28 Aligned_cols=144 Identities=14% Similarity=0.195 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHcCCChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhccchHHHHHHH
Q 003418 227 DDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSL 306 (821)
Q Consensus 227 ~elk~lY~~yL~~~l~~g~l~~~~~~~L~~LknilGL~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a~~ka~~lq~l 306 (821)
.+++.+|+.|+++| |.|.++.++-. .-++++|..++.+ .|-.++-.++-...-.. .+--+++-.|
T Consensus 26 ~ei~~~Yr~Fk~~c-P~G~~~~~~F~--~i~~~~fp~gd~~-----------~y~~~vF~~fD~~~dg~-i~F~Efi~al 90 (193)
T KOG0044|consen 26 KEIQQWYRGFKNEC-PSGRLTLEEFR--EIYASFFPDGDAS-----------KYAELVFRTFDKNKDGT-IDFLEFICAL 90 (193)
T ss_pred HHHHHHHHHhcccC-CCCccCHHHHH--HHHHHHCCCCCHH-----------HHHHHHHHHhcccCCCC-cCHHHHHHHH
Confidence 49999999999977 88999998833 3355666655433 23333322332211111 1113356666
Q ss_pred hhhhCCCHHHHHHHHHHHHHHHHHHHhhcCccChHhHHHHHHHHHHhccCHH----HHHHHHHhhhhhhHHHHHHHHHhc
Q 003418 307 CEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQ----TVEAAHSDICGSLFEKVVKDAISS 382 (821)
Q Consensus 307 c~~L~fd~e~a~e~hk~iYr~kL~q~vs~~~lsded~~~L~~lr~lL~I~~~----~V~~ah~d~~g~lf~k~V~eAl~~ 382 (821)
|-.++=..+.-...+=.+|. .=-+|.+|.+ +.|.=++.++-+.-. .-..-+++.+..+|++.=.
T Consensus 91 s~~~rGt~eekl~w~F~lyD-----~dgdG~It~~--Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~----- 158 (193)
T KOG0044|consen 91 SLTSRGTLEEKLKWAFRLYD-----LDGDGYITKE--EMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDK----- 158 (193)
T ss_pred HHHcCCcHHHHhhhhheeec-----CCCCceEcHH--HHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCC-----
Confidence 66665555544555555551 1117888887 555555555554443 3344556666666665433
Q ss_pred CCCCCC--hHHHHHHHH
Q 003418 383 GVEGYD--GEVKKAVRK 397 (821)
Q Consensus 383 g~~g~~--~e~~~~lrk 397 (821)
..||.. .++...+++
T Consensus 159 n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 159 NKDGKLTLEEFIEGCKA 175 (193)
T ss_pred CCCCcccHHHHHHHhhh
Confidence 234555 455555543
No 46
>PHA00666 putative protease
Probab=28.12 E-value=1.4e+02 Score=32.33 Aligned_cols=33 Identities=24% Similarity=0.524 Sum_probs=29.1
Q ss_pred cC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003418 597 DG-QLTKARIEQLNEVQKQVGLPSEYAQKIIKNIT 630 (821)
Q Consensus 597 ~G-~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy 630 (821)
.| .||..-......+|.+||||++.|+++.. .|
T Consensus 93 EG~elD~~~l~~F~~~a~ElgLtqEQAQklvD-~y 126 (233)
T PHA00666 93 EGVELDTGALGAFEPVARELNLTNEQAQKVVD-LY 126 (233)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH-HH
Confidence 44 48888888999999999999999999998 55
No 47
>CHL00168 pbsA heme oxygenase; Provisional
Probab=27.89 E-value=1e+02 Score=33.37 Aligned_cols=111 Identities=16% Similarity=0.234 Sum_probs=58.0
Q ss_pred HHHHHHhcccCCCCCChHHHHHHHHHHHHcCCChhhHHHHHHHH---hhHHHHHHHHhhhcCCcchhccchHHHHHHHhh
Q 003418 232 LYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDV---TSKVYRKRLGQAVSGGALEAADSKASFLQSLCE 308 (821)
Q Consensus 232 lY~~yL~~~l~~g~l~~~~~~~L~~LknilGL~~~ea~~ih~ev---~~~lyR~rL~e~v~sg~le~a~~ka~~lq~lc~ 308 (821)
.|..||.+ +++|++ = -..+++.+||++.+.-+.+.=- ..+-|++..++....-.++. +-++.+++.-..
T Consensus 124 ~YvrYLGd-lsGGQi-----I-~k~l~r~~gl~~~~G~~Fy~F~~i~~~~~fk~~yr~~Ld~l~l~e-~e~~~iI~EA~~ 195 (238)
T CHL00168 124 AYTRYLGD-LSGGQI-----L-KKIAQRAMNLSDSGGLAFYDFDNIEDDQEFKQIYKAALDNLPLSD-DQIQNIIAEANI 195 (238)
T ss_pred HHHHHHHh-ccccHH-----H-HHHHHHHhCCCCCcCccccCCCCcCcHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHH
Confidence 78888877 444433 2 3346788888764433332111 13344444444444333333 334556666666
Q ss_pred hhCCCHHHHHHHHHHHHHHHHHHHhhcCccChHhHHHHHHHHHHhccC
Q 003418 309 ELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVP 356 (821)
Q Consensus 309 ~L~fd~e~a~e~hk~iYr~kL~q~vs~~~lsded~~~L~~lr~lL~I~ 356 (821)
.+.+..++..++...+- +.+.+.+ | +-=..+|.+++++|..+
T Consensus 196 AF~lN~~vf~eL~~~~~-~~~~~~~----~-~~~~~~~~~~~~~~~~~ 237 (238)
T CHL00168 196 AFNLNMKMFQELNSSFI-KIITMLI----K-NTILSFLGKLKVMLAFN 237 (238)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH----H-HHHHHHHHHHHHHHhcc
Confidence 66666666666664421 2222211 1 11256788888887654
No 48
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=27.64 E-value=1.6e+02 Score=26.91 Aligned_cols=54 Identities=33% Similarity=0.429 Sum_probs=41.0
Q ss_pred HHHHHHHhhhhCCCHHHHHHHHHHHHHHHHHHHhhcCc-------cChHhHHHHHHHHHHhccCHHHH
Q 003418 300 ASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGE-------LNDEDVAALLRLRVMLCVPQQTV 360 (821)
Q Consensus 300 a~~lq~lc~~L~fd~e~a~e~hk~iYr~kL~q~vs~~~-------lsded~~~L~~lr~lL~I~~~~V 360 (821)
..--+.+|+.+|+++..| .+..+.+++..+. +|++|++.|.-.|.-+.-|...+
T Consensus 13 K~~A~~vl~~lGls~S~A-------i~~fl~qi~~~~~iPF~~~~~s~ed~~~l~~~re~~~~~~~~~ 73 (80)
T PRK11235 13 KARAYAVLEKLGVTPSEA-------LRLLLQYVAENGRLPFKTVLLSDEDAALLETVRERLANPQKGI 73 (80)
T ss_pred HHHHHHHHHHhCCCHHHH-------HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCe
Confidence 334568999999999765 4556778887443 89999999999898888776543
No 49
>PF07746 LigA: Aromatic-ring-opening dioxygenase LigAB, LigA subunit; InterPro: IPR011986 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A (IPR004183 from INTERPRO) and B (IPR004183 from INTERPRO). LigAB is a protocatechuate 4,5-dioxygenase (1.13.11.8 from EC) that belongs to the extradiol class III enzyme family. The LigA subunit of this enzyme is multi-helical, containing a compact array of 6 short helices [].; PDB: 1BOU_A 1B4U_A.
Probab=26.80 E-value=3.1e+02 Score=25.43 Aligned_cols=67 Identities=22% Similarity=0.341 Sum_probs=35.7
Q ss_pred HHHHhhhhCCCHHHHHHHHHHHHHHHHHHHhhcCccChHhHHH------------------HHHHHHHhccCHHHHHHHH
Q 003418 303 LQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAA------------------LLRLRVMLCVPQQTVEAAH 364 (821)
Q Consensus 303 lq~lc~~L~fd~e~a~e~hk~iYr~kL~q~vs~~~lsded~~~------------------L~~lr~lL~I~~~~V~~ah 364 (821)
++++|-+| .+|+....|.. -=..++..=-||+++.++ |.++..+++++..++...+
T Consensus 1 lNkf~~~L-~~~~~r~~F~~-----D~~a~~~~~~Lt~eer~av~~rD~~~L~~~G~n~~~L~k~~~v~g~~~~~~~a~m 74 (88)
T PF07746_consen 1 LNKFCWSL-NDPENRERFLA-----DPEAYLDEYGLTEEERQAVLDRDWLALIALGGNIYYLEKLAAVLGMSMQDIYAAM 74 (88)
T ss_dssp HHHHHHGG-GSHHHHHHHHH------HHHHHHCCT--HHHHHHHHCT-HHHHHHTT--HHHHHHHHHHTT--HHHHHHHT
T ss_pred ChHHHHHH-cCHHHHHHHHH-----CHHHHHHHcCCCHHHHHHHHcCCHHHHHHCCccHHHHHHHHHHhCcCHHHHhhhc
Confidence 34566666 66665555433 122235555566666665 4556777788887777776
Q ss_pred HhhhhhhHHHH
Q 003418 365 SDICGSLFEKV 375 (821)
Q Consensus 365 ~d~~g~lf~k~ 375 (821)
+...-.-|++.
T Consensus 75 ~g~s~eef~~~ 85 (88)
T PF07746_consen 75 RGMSVEEFQQM 85 (88)
T ss_dssp TTS-HHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 66555555543
No 50
>PHA00666 putative protease
Probab=26.33 E-value=1.4e+02 Score=32.27 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=26.4
Q ss_pred cCCCCChhhHHHHHHHHhhccCChHHHHHHHHHH
Q 003418 118 VGRDVDAEHIVRLREEQLSYRLSDALAEDLFREH 151 (821)
Q Consensus 118 ~g~~~~a~~l~~lr~~q~~~~Lsde~A~~~fr~~ 151 (821)
-|..+|...+...+..=..+.|+.|-|-.++..+
T Consensus 93 EG~elD~~~l~~F~~~a~ElgLtqEQAQklvD~y 126 (233)
T PHA00666 93 EGVELDTGALGAFEPVARELNLTNEQAQKVVDLY 126 (233)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4556777778888888888888888888888844
No 51
>PHA01351 putative minor structural protein
Probab=26.01 E-value=1.4e+03 Score=28.89 Aligned_cols=176 Identities=13% Similarity=0.121 Sum_probs=103.1
Q ss_pred HHHHHHHhHHHHHHHHHHHhhc-CC--CCHH-HHHHHHHHHHHcCCCHHHH---HHHHHHH----HHHHHHHHHHHHHhc
Q 003418 576 VDVHRGLAEQAFRQQAEVILAD-GQ--LTKA-RIEQLNEVQKQVGLPSEYA---QKIIKNI----TTTKMAAAIETAVAQ 644 (821)
Q Consensus 576 ~~Ih~~va~~ayrqql~~~L~~-G~--Ld~a-~a~~L~~Iq~~Lgl~~e~a---~kiik~i----y~~Kl~~~ie~~~~~ 644 (821)
+=...-++.|..|..++.+|+. |+ +|-. =-.-.+.+-+.||.|.+.- ..||.+. |.+-+-+-.++++..
T Consensus 415 ~ya~qr~~rq~lrsllsralsnfgrpyid~~yl~st~~~lfkel~~p~~v~~~f~~mi~qsqliq~nqll~~~l~sl~sk 494 (1070)
T PHA01351 415 EYAVQRIVRQFLRSLLSRALSNFGRPYLDFKYLDSTIAKLFKDLGYPEEVRTVFDTMITQSQLIQTNQLLLRQLQQIVSL 494 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcceehHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 3344556777888888888888 75 6554 2234578889999999853 3445444 234445556778899
Q ss_pred CCCCHHHHHHHH-hccchh--hhh----ccHHHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhcCCCHHHHHHHHHHH
Q 003418 645 GKLNIKQIRELK-EASVDL--DNM----ISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHEL 717 (821)
Q Consensus 645 g~Lt~~~V~eL~-~~gv~L--~~~----i~~~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L~L~~ekAk~Il~~~ 717 (821)
|-.+.++++++. +.|++. ..- .+-..-.+.+=|....-+-+=-+ +++++-.++ ..||++.+-...+..+-
T Consensus 495 Gi~DqkkIke~LKa~gfnks~~d~~L~~~~n~a~iesqIK~LQ~qL~nF~I--S~QD~EkEL-KkLg~s~alIqaiI~Ey 571 (1070)
T PHA01351 495 GIFDQKKIKEELKANKFNEQVALQILESELQFAQLQNQLKEYQFKLNNFLI--SPQDLEKDL-KHLGFDSAIISALIYEN 571 (1070)
T ss_pred ccccHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CHHHHHHHH-HHcCCCHHHHHHHHHHH
Confidence 999999998876 455544 111 22222333333444433333222 333443444 45888888887777766
Q ss_pred HHHHHHHHHHHHHHHHHhh---chhhHHHHHHHHhhcccc
Q 003418 718 ARNRLSNSLIQAVSLLRQK---NRQGVVSSLNDLLACDKA 754 (821)
Q Consensus 718 ~~~r~~n~l~qAva~lrq~---~~~e~vk~L~kLl~~~~~ 754 (821)
-..-+...-.+-.-.|-++ +..++-+++++|..--.+
T Consensus 572 ftepL~KlQLnvyEsLakKGY~d~qq~ksElk~LGidKe~ 611 (1070)
T PHA01351 572 QVEQLIKFQLNNIESLAKKGYLSLDEIKKQFKAIGIIKEY 611 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhhccchhH
Confidence 5555555444444443333 445666677666543333
No 52
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=25.25 E-value=3e+02 Score=26.50 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCCchhhhhhcHHHHHHHHHhhhhcCCCCcchHHHHhhhhhhhee--hhccccccc
Q 003418 20 DKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVS--TLVFGEASS 83 (821)
Q Consensus 20 ~~i~~fk~~lgl~d~daa~~h~eigrr~~r~r~e~gdr~~~~e~~~~fqkli~vs--~~vfg~~~~ 83 (821)
+.|..+|...|+.-.+.|. ++.|.+.-+. ++|.|.+.+..+.-..+-+..=|| .++||+...
T Consensus 8 ~rlk~~R~~~gltq~~lA~-~~gvs~~~is-~~E~g~~~p~~~~l~~la~~l~vs~~~l~~g~~~~ 71 (135)
T PRK09706 8 QRIRYRRKQLKLSQRSLAK-AVKVSHVSIS-QWERDETEPTGKNLFALAKALQCSPTWLLFGDEDK 71 (135)
T ss_pred HHHHHHHHHcCCCHHHHHH-HhCCCHHHHH-HHHcCCCCCCHHHHHHHHHHHCcCHHHHhcCCCcC
Confidence 6789999999999887776 5677777777 499999999888766666665554 456777643
No 53
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=24.03 E-value=1.1e+03 Score=26.89 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=54.9
Q ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchhhhhccHHHHHHHHHHHHHHHhh
Q 003418 607 QLNEVQKQV--GLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFS 684 (821)
Q Consensus 607 ~L~~Iq~~L--gl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L~~~i~~~~r~~lFkk~V~eais 684 (821)
.++.|.+.. -+|+..-..-+..+..+.+.+ +-..| ++.++...+- .=.+...+......++-..-|.++|.
T Consensus 279 i~~~l~~~~~~~lPe~~v~~~~~~~~~~~~~~----~~~~g-~~~~~~~~~~--~e~~~~~~~~~a~~~~k~~lil~~ia 351 (408)
T TIGR00115 279 LLDKLVENNEFELPESLVEQEIDRLLEQALQQ----LQQQG-IDLEEYLKDT--EEELREEFREEAERRVKLGLILEEIA 351 (408)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH----HHHcC-CCHHHhhccC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 567766666566555555544 33344 4555433210 00122334444444444444555555
Q ss_pred c-CCCCCchH---HHHhhhhhhcCCCHHHHHHHHHHH
Q 003418 685 S-GTGEFDAE---EVYEKIPADLSINAEKARRVVHEL 717 (821)
Q Consensus 685 s-Gt~~~d~~---e~~ekl~~~L~L~~ekAk~Il~~~ 717 (821)
. --+..+.+ +.++++....|.+.+..++.+.+-
T Consensus 352 ~~e~I~vt~eei~~~~~~~a~~~g~~~~~~~~~~~~~ 388 (408)
T TIGR00115 352 KKEKIEVSEEEVEAEIEELAQQYGEDPEEVKKYYKKN 388 (408)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 4 33334443 778888888999888877766543
No 54
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=23.32 E-value=9.3e+02 Score=27.72 Aligned_cols=61 Identities=18% Similarity=0.322 Sum_probs=40.4
Q ss_pred HcCCChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhccchHHHHHHHhhhhCCCHHHHHHHHHHHH
Q 003418 260 IFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIY 325 (821)
Q Consensus 260 ilGL~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a~~ka~~lq~lc~~L~fd~e~a~e~hk~iY 325 (821)
++|-++.+|..-.+.++...+++ | .++ ++..--+...+++.+++.|++|++...++...+.
T Consensus 131 iiG~~~~~aDaEvi~l~~e~l~~-l--gi~--~~~l~ig~~~i~~~il~~l~l~~~~~~~l~~~l~ 191 (392)
T PRK12421 131 LYGHAGIEADLEIIRLMLGLLRN-A--GVP--ALHLDLGHVGIFRRLAELAGLSPEEEEELFDLLQ 191 (392)
T ss_pred EeCCCCchhHHHHHHHHHHHHHH-c--CCC--CeEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 56666666666666666666663 3 111 1222234567899999999999998887776655
No 55
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=22.85 E-value=2.2e+02 Score=28.91 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=43.9
Q ss_pred HHHhhhhhc-CCChHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003418 560 LLSQLGGIL-GLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNI 629 (821)
Q Consensus 560 ~L~qL~~IL-GL~~kE~~~Ih~~va~~ayrqql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~i 629 (821)
-|++|..-| +|+..|.+++... |+.+...+..+|.=. ++++.+||=|.+.|.++..+.
T Consensus 6 fL~~L~~~L~~lp~~e~~e~l~~-----Y~e~f~d~~~~G~sE-------eeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 6 FLNELEKYLKKLPEEEREEILEY-----YEEYFDDAGEEGKSE-------EEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH-----HHHHHHHhhhCCCCH-------HHHHHHcCCHHHHHHHHHHhh
Confidence 345555544 4899999998865 777888887776433 689999999999999987654
No 56
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=22.67 E-value=3.5e+02 Score=26.69 Aligned_cols=85 Identities=22% Similarity=0.356 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHH----HHHHH-hccchhhhhccHHHHHHHHHHHHHHHhhc---CCCCCchH-------
Q 003418 629 ITTTKMAAAIETAVAQGKLNIKQ----IRELK-EASVDLDNMISESLRENLFKKTVDEIFSS---GTGEFDAE------- 693 (821)
Q Consensus 629 iy~~Kl~~~ie~~~~~g~Lt~~~----V~eL~-~~gv~L~~~i~~~~r~~lFkk~V~eaiss---Gt~~~d~~------- 693 (821)
||.|...+ |-..+..|.|.+.+ |++|. .+||+ ..+-.+-|+--..+.|=- |.|.|=.+
T Consensus 12 IY~QI~~q-Ik~~I~~g~l~pGdkLPSvRelA~~~~VN------pnTv~raY~eLE~eG~i~t~rg~G~fV~~~~~~~~~ 84 (125)
T COG1725 12 IYEQIANQ-IKEQIASGELKPGDKLPSVRELAKDLGVN------PNTVQRAYQELEREGIVETKRGKGTFVTEDAKEILD 84 (125)
T ss_pred HHHHHHHH-HHHHHHhCCcCCCCCCCcHHHHHHHhCCC------HHHHHHHHHHHHHCCCEEEecCeeEEEcCCchhhHH
Confidence 56666555 34456888888877 77776 44544 334444454444444321 33333221
Q ss_pred ------------HHHhhhhhhcCCCHHHHHHHHHHHHHHH
Q 003418 694 ------------EVYEKIPADLSINAEKARRVVHELARNR 721 (821)
Q Consensus 694 ------------e~~ekl~~~L~L~~ekAk~Il~~~~~~r 721 (821)
.++.+ ...+|++.++...++.+....+
T Consensus 85 ~~~~~~~~~~l~~~I~~-~~~~G~s~eei~~~~~~~~~~~ 123 (125)
T COG1725 85 QLKRELAEEELEEFIEE-AKALGLSLEEILELLKEIYEED 123 (125)
T ss_pred HHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHhcc
Confidence 01111 2457888888888887776543
No 57
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=22.52 E-value=1.1e+03 Score=26.41 Aligned_cols=96 Identities=10% Similarity=0.184 Sum_probs=54.7
Q ss_pred cchHHHHHHHhhhhCCCHHHHHHHHHHHHHHHHHHHhhcCccChHhHHHHHHHHHHhccCHHHHHHHHHhhh--------
Q 003418 297 DSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDIC-------- 368 (821)
Q Consensus 297 ~~ka~~lq~lc~~L~fd~e~a~e~hk~iYr~kL~q~vs~~~lsded~~~L~~lr~lL~I~~~~V~~ah~d~~-------- 368 (821)
+.+....+.+|..+++||+..+.-.+.+= +.+. -.|-++....+.-. ..++....+|+
T Consensus 122 e~~~~IF~Alc~a~g~Dp~qyr~dA~~l~-----~~A~--~~s~~~l~~~l~~~-------~~l~~~l~~IA~~a~~~~~ 187 (283)
T PLN00047 122 EDRDAIFKAYIKALGEDPEQYRKDAAKLE-----EWAR--SQTGSSLVDFSSKE-------GEIEGILKDIAERAGSKGK 187 (283)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHH-----HHHh--cCCHHHHHHHHhcc-------hHHHHHHHHHHHhhccCCC
Confidence 55677899999999999998777654432 2232 23333232222211 33444444443
Q ss_pred ---hhhHHHHHHHHHhcCCCCCChHHHHHHHHHHHhcCCCHHHHH
Q 003418 369 ---GSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAM 410 (821)
Q Consensus 369 ---g~lf~k~V~eAl~~g~~g~~~e~~~~lrka~~~LrLsdE~A~ 410 (821)
.++|.--+-..|.. .++-+++ .+.+....|+|+.+...
T Consensus 188 f~YSRlfAIGLf~LLe~-a~~~d~~---~l~~l~e~Lgls~~kv~ 228 (283)
T PLN00047 188 FSYSRFFAIGLFRLLEL-ANATEPT---ALEKLCAALNINKRSVD 228 (283)
T ss_pred cchHHHHHHHHHHHHHh-cCCCCHH---HHHHHHHHcCCCHHHHH
Confidence 23444444333332 1222453 88889999999998775
No 58
>PRK01294 lipase chaperone; Provisional
Probab=22.20 E-value=1.2e+03 Score=26.58 Aligned_cols=125 Identities=15% Similarity=0.231 Sum_probs=76.7
Q ss_pred HHHHHHHH---HHHhhcCCCCHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcc
Q 003418 584 EQAFRQQA---EVILADGQLTKA-RIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEAS 659 (821)
Q Consensus 584 ~~ayrqql---~~~L~~G~Ld~a-~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~g 659 (821)
+..|+++. -.+..+..|+.+ |...|+.+..+| |++.-..+...-..+.+...+..+-..| .|++++..++...
T Consensus 184 E~~~~~~aL~rl~I~~d~~Ls~~qK~~~l~~L~~qL--P~~~~~~~~~~~~~~~l~~~~~~l~~~g-~s~~~~~~~r~~~ 260 (336)
T PRK01294 184 ENQYQRYALERLRIAQDPSLSDAQKAARLAALEAQL--PEDLRAALQESQRQQALLQQLAQLQASG-ASPQELRLMRAQL 260 (336)
T ss_pred HHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHHhC--CHhhHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHh
Confidence 56788887 566777889777 888999999875 6666544444333355555555555566 6999999998543
Q ss_pred chh----------hhhccHHHHHHHHHHHHHHHh-hcCCCCCchHHHHhhhhhhcCCCHHHHHH
Q 003418 660 VDL----------DNMISESLRENLFKKTVDEIF-SSGTGEFDAEEVYEKIPADLSINAEKARR 712 (821)
Q Consensus 660 v~L----------~~~i~~~~r~~lFkk~V~eai-ssGt~~~d~~e~~ekl~~~L~L~~ekAk~ 712 (821)
|.- .+.-.-..|-.-|...-..++ .+|..+-+-+.-+..++...= +..+.+.
T Consensus 261 vG~EaA~RL~~Ld~qr~~wq~r~~~Y~~~R~~I~~~~~ls~~~k~~aI~~LR~q~F-~~~E~~R 323 (336)
T PRK01294 261 VGPEAAQRLEQLDQQRAAWQQRYDDYLAQRAQILNAAGLSPQDRQAQIAQLRQQRF-SPQEALR 323 (336)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhC-CHHHHHH
Confidence 332 222444555566666666666 335554444456666665432 4444443
No 59
>cd04758 Commd10 COMM_Domain containing protein 10. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=22.04 E-value=8.1e+02 Score=25.20 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=45.1
Q ss_pred ccchhhhhccHHHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhcCCCHHHHHHHHHHH
Q 003418 658 ASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHEL 717 (821)
Q Consensus 658 ~gv~L~~~i~~~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L~L~~ekAk~Il~~~ 717 (821)
-++.+.+.++.+++.+|-...+...- ....+...++.++++.++++++.+..+.++..+
T Consensus 3 ~av~~ln~l~~~~f~~ll~~i~~~l~-~~~~~~~s~~~~~kl~~~~~~~~~~l~~vi~~l 61 (186)
T cd04758 3 EAVSLINSIDTEKFPRLLSRLFQKLH-LKAERSFSEEEEEKLQEAFKLLSQDLKLLLETI 61 (186)
T ss_pred hHHHHHhcCCHHHHHHHHHHHHHHhc-ccccCCccHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 35677888999999999888875444 334444557888999999999999888877655
No 60
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=21.78 E-value=1.4e+02 Score=31.11 Aligned_cols=48 Identities=13% Similarity=0.226 Sum_probs=44.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 003418 589 QQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAA 636 (821)
Q Consensus 589 qql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~ 636 (821)
+-|..|+..|.+|--+-.-|++|-++||+++...++-++.+-++-|..
T Consensus 162 ~vL~~A~~~GYFd~PR~~~l~dLA~~lGISkst~~ehLRrAe~Kl~~~ 209 (215)
T COG3413 162 EVLRLAYKMGYFDYPRRVSLKDLAKELGISKSTLSEHLRRAERKLIEA 209 (215)
T ss_pred HHHHHHHHcCCCCCCccCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 457788999999999999999999999999999999999999988876
No 61
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.77 E-value=8.7e+02 Score=24.80 Aligned_cols=102 Identities=25% Similarity=0.390 Sum_probs=70.7
Q ss_pred HHhccc-CCCCCChHHHHHHHH-HHHHcCCChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhc--cchHHHHHHHhhhhC
Q 003418 236 YVTDSL-SGGRMEESKLAALNQ-LRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAA--DSKASFLQSLCEELH 311 (821)
Q Consensus 236 yL~~~l-~~g~l~~~~~~~L~~-LknilGL~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a--~~ka~~lq~lc~~L~ 311 (821)
.|.++. .+|..+..|..++.. +++.|||+..+..+....-- ...+|+. -+-+..+.+ +
T Consensus 34 Llf~Vm~ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e-------------~~~~Ea~d~y~fts~l~r-----~ 95 (148)
T COG4103 34 LLFHVMEADGTVSESEREAFRAILKENFGIDGEELDALIEAGE-------------EAGYEAIDLYSFTSVLKR-----H 95 (148)
T ss_pred HHHHHHhcccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-------------HhhHHHHHHHHHHHHHHH-----h
Confidence 344444 679898888888766 58899999888766543221 1122321 111223333 6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh-hcCccChHhHHHHHHHHHHhccCHHHH
Q 003418 312 FDPQKASEIHEEIYRQKLQQCV-ADGELNDEDVAALLRLRVMLCVPQQTV 360 (821)
Q Consensus 312 fd~e~a~e~hk~iYr~kL~q~v-s~~~lsded~~~L~~lr~lL~I~~~~V 360 (821)
+|++...++-+..+ .++ +||.+++-+..-+-+...+|+|+.++.
T Consensus 96 Ld~e~R~eli~~mw-----eIa~ADg~l~e~Ed~vi~RvAeLLgV~~~d~ 140 (148)
T COG4103 96 LDEEQRLELIGLMW-----EIAYADGELDESEDHVIWRVAELLGVSPEDR 140 (148)
T ss_pred cCHHHHHHHHHHHH-----HHHHccccccHHHHHHHHHHHHHhCCCHHHH
Confidence 78888788776665 444 599999999999999999999999988
No 62
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=21.37 E-value=4.5e+02 Score=26.67 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 003418 583 AEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAV 642 (821)
Q Consensus 583 a~~ayrqql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~ 642 (821)
...++++-+++-.....|++++.+.|.++=..||..+-.-|.=+=+.|.+.|...++.+-
T Consensus 85 ~~~~w~~~~~~~~~~~~L~~~d~e~L~~lg~~LG~~D~~~Q~k~i~l~~~~L~~~~~~a~ 144 (170)
T PF09548_consen 85 FAEAWEEAVEKLLKESALKKEDKEILLELGKSLGYSDREMQEKHIELYLEQLEQQLEEAR 144 (170)
T ss_pred HHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888999999999999999999999999999999999999988777663
No 63
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=21.11 E-value=1.5e+02 Score=31.88 Aligned_cols=49 Identities=18% Similarity=0.335 Sum_probs=36.5
Q ss_pred cCCCCCcccHHHHHHHHHHhh----hcccccccCCCcccccccCchHHHHHHhh
Q 003418 515 LKDDLPERDRTDLYKTYLLYC----LTGEVTKIPFGASITTKKDDSEYVLLSQL 564 (821)
Q Consensus 515 l~~d~~~~d~~~LYr~YL~~c----lsg~~~~~p~g~~i~~~kdd~e~~~L~qL 564 (821)
-++.+.+.+.-.||+....+| |+|-+|-+++|-...... ...|.-|.+|
T Consensus 139 ~K~Giepse~~~l~~~i~~~c~nL~f~GlMTIGs~~~s~ss~e-NpDF~~L~~~ 191 (244)
T KOG3157|consen 139 SKSGIEPSEAPELAEHIKSECKNLKFSGLMTIGSFDNSHSSGE-NPDFQVLVKL 191 (244)
T ss_pred ccCCCChhhhHHHHHHHHHhCCcceeeeeEEeccccccccCCC-CccHHHHHHH
Confidence 456677889999999999988 489888888877763332 4457777666
No 64
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=20.61 E-value=7.7e+02 Score=27.54 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 003418 572 TKEIVDVHRGLAEQAFRQQAEVILADGQ-LTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIK 650 (821)
Q Consensus 572 ~kE~~~Ih~~va~~ayrqql~~~L~~G~-Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~ 650 (821)
..|.+-...-+---+|+.-|...-+.|. ++.++..-|.+|.++|.++.+.=+..+.++-.+=+..-|-.-...+..+.+
T Consensus 5 ~~~~~~~~~~le~eaY~~vl~af~aq~d~iS~ek~~~~teLrk~l~Is~eeh~~~~r~~~~d~~~~~i~~n~~~~n~~qe 84 (273)
T KOG4675|consen 5 RDEMEAQLHRLELEAYASVLRAFKAQGDAISWEKEELLTELRKELNISDEEHRMLVRRAINDDLITRIRENSRGSNKSQE 84 (273)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHhhhhccCHHHHHHHHHHHhccHHHHHHHHhhcCCCchhh
Confidence 3344444455677789999999999998 999999999999999999999998888887665444433222234445666
Q ss_pred HHHHHH
Q 003418 651 QIRELK 656 (821)
Q Consensus 651 ~V~eL~ 656 (821)
...+.+
T Consensus 85 ~~~e~~ 90 (273)
T KOG4675|consen 85 WSGEGR 90 (273)
T ss_pred hhhhhh
Confidence 666655
No 65
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=20.22 E-value=9e+02 Score=26.68 Aligned_cols=62 Identities=15% Similarity=0.279 Sum_probs=39.9
Q ss_pred HcCCChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhccchHHHHHHHhhhhCCCHHHHHHHHHHHHH
Q 003418 260 IFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYR 326 (821)
Q Consensus 260 ilGL~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a~~ka~~lq~lc~~L~fd~e~a~e~hk~iYr 326 (821)
++|-++..+..-.+.++..++.. | .-.++..--+...+++.+|+.+++|++....+...+.+
T Consensus 117 iig~~~~~adaEvi~l~~~~l~~-l----g~~~~~i~l~~~~il~~il~~~~~~~~~~~~l~~~l~~ 178 (314)
T TIGR00443 117 LIGAGGPAADAEVIALLIEALKA-L----GLKDFKIELGHVGLVRALLEEAGLPEEAREALREALAR 178 (314)
T ss_pred EeCCCCchhHHHHHHHHHHHHHH-c----CCCCeEEEeCcHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 35555555555555556666553 2 11233333456789999999999999988877766653
Done!