Query 003418
Match_columns 821
No_of_seqs 69 out of 71
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 00:31:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h5n_A Hypothetical protein PG 93.4 0.73 2.5E-05 43.4 11.8 103 586-710 21-123 (133)
2 2h5n_A Hypothetical protein PG 93.2 1.6 5.6E-05 41.0 13.8 109 228-363 17-126 (133)
3 2ou3_A Tellurite resistance pr 92.9 0.75 2.6E-05 44.3 11.3 110 233-369 33-142 (161)
4 2ou3_A Tellurite resistance pr 91.8 1.7 5.9E-05 41.8 12.3 105 591-718 37-141 (161)
5 2jxu_A TERB, KP-TERB; tellurit 91.3 0.76 2.6E-05 43.5 9.2 115 232-360 34-149 (153)
6 1uz3_A EMSY protein; chromatin 84.0 11 0.00039 34.4 11.4 81 566-646 9-89 (102)
7 2jxu_A TERB, KP-TERB; tellurit 82.4 3.7 0.00013 38.8 8.1 111 586-708 34-147 (153)
8 2fmm_E Protein EMSY; ENT domai 76.7 27 0.00092 33.3 11.7 80 566-645 1-80 (133)
9 1uz3_A EMSY protein; chromatin 51.4 1E+02 0.0034 28.2 9.8 67 317-383 22-88 (102)
10 2cuj_A Transcriptional adaptor 38.1 44 0.0015 30.7 5.5 41 301-345 43-83 (108)
11 2elj_A Transcriptional adapter 36.4 49 0.0017 29.1 5.3 40 301-344 25-65 (88)
12 1ais_B TFB TFIIB, protein (tra 35.0 2.9E+02 0.01 26.5 11.4 97 605-708 13-124 (200)
13 1ais_B TFB TFIIB, protein (tra 34.7 3E+02 0.01 26.5 11.3 66 253-331 71-139 (200)
14 2fmm_E Protein EMSY; ENT domai 34.5 2.1E+02 0.0072 27.2 9.5 66 317-382 14-79 (133)
15 2zko_A NS1, NS1A, non-structur 34.4 1.4E+02 0.0046 25.2 7.2 39 311-351 3-41 (73)
16 2es4_D Lipase chaperone; prote 31.5 4E+02 0.014 28.7 12.5 114 584-700 184-311 (332)
17 2qfc_A PLCR protein; TPR, HTH, 29.6 3.3E+02 0.011 26.8 11.0 167 606-792 8-182 (293)
18 3lf9_A 4E10_D0_1IS1A_001_C (T1 26.8 1.2E+02 0.0041 28.5 6.3 72 581-656 14-85 (121)
19 2aqe_A Transcriptional adaptor 26.1 47 0.0016 29.4 3.4 39 301-343 25-63 (90)
20 2y6w_A BCL-2-like protein 2; a 25.1 1.8E+02 0.0062 28.5 7.8 97 521-662 20-119 (177)
21 2zc2_A DNAD-like replication p 24.9 1.4E+02 0.0049 24.8 6.1 32 598-629 15-47 (78)
22 1s4k_A Putative cytoplasmic pr 23.0 65 0.0022 30.2 3.8 30 253-282 7-37 (120)
23 3osj_A Phycobilisome LCM core- 21.8 1.2E+02 0.0041 29.4 5.5 42 615-656 18-71 (147)
24 3ohw_B Phycobilisome LCM core- 21.5 1.2E+02 0.0041 29.4 5.4 41 616-656 19-72 (148)
25 3f4m_A Tumor necrosis factor, 21.4 2E+02 0.0067 28.3 7.0 85 595-694 3-90 (161)
26 1b0n_A Protein (SINR protein); 20.8 3.7E+02 0.013 22.7 8.2 59 252-318 4-62 (111)
27 1of9_A Pore-forming peptide am 20.6 1.8E+02 0.0062 24.3 5.9 57 588-652 12-70 (77)
28 3u3w_A Transcriptional activat 20.6 6.1E+02 0.021 24.8 15.7 166 606-792 8-182 (293)
29 2oeq_A Protein of unknown func 20.6 3.6E+02 0.012 24.4 8.4 59 587-645 51-110 (122)
No 1
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=93.38 E-value=0.73 Score=43.39 Aligned_cols=103 Identities=13% Similarity=0.156 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchhhhh
Q 003418 586 AFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNM 665 (821)
Q Consensus 586 ayrqql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L~~~ 665 (821)
++.=.+..+.+||.+++++.+.+..+..++|++++.+..++.... .....+...+ ...
T Consensus 21 ~~aLl~~VA~ADG~v~~~E~~~l~~~l~~lgl~~~e~~~l~~~~~---------------~~~~~~~~~~-------~~~ 78 (133)
T 2h5n_A 21 IIKMAKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASD---------------SIEASQAVAL-------IAR 78 (133)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHGGGTCCHHHHHHHHHHHT---------------TSCHHHHHHH-------HHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH---------------hccHHHHHHH-------HHc
Confidence 666678889999999999999999999999999999888888653 1122222211 133
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhcCCCHHHH
Q 003418 666 ISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKA 710 (821)
Q Consensus 666 i~~~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L~L~~ekA 710 (821)
++.+.|..+.+--+.=+.++|...-.+..+++++..-||++....
T Consensus 79 ~~~e~r~~ll~~L~~IA~ADG~i~~~E~~lLr~ia~~Lgls~~d~ 123 (133)
T 2h5n_A 79 MDEERKKYVASYLGVIMASDGDIDDNELALWTLISTLCGLPTMTV 123 (133)
T ss_dssp SCHHHHHHHHHHHHHHSCBTTBCCHHHHHHHHHHHHHHTCCCCCH
T ss_pred CCHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 568888888888888888888886666799999999999987655
No 2
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=93.18 E-value=1.6 Score=40.96 Aligned_cols=109 Identities=14% Similarity=0.271 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHcCCChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhccchHHHHHHHh
Q 003418 228 DLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLC 307 (821)
Q Consensus 228 elk~lY~~yL~~~l~~g~l~~~~~~~L~~LknilGL~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a~~ka~~lq~lc 307 (821)
++..+...-..-+..+|.++..|...+.++-..|||++.++..+..... . .......+ ++
T Consensus 17 ~l~a~~aLl~~VA~ADG~v~~~E~~~l~~~l~~lgl~~~e~~~l~~~~~-~------------------~~~~~~~~-~~ 76 (133)
T 2h5n_A 17 ELTAIIKMAKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASD-S------------------IEASQAVA-LI 76 (133)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHGGGTCCHHHHHHHHHHHT-T------------------SCHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-h------------------ccHHHHHH-HH
Confidence 6666666655666689999999999999998889999988877766543 0 01111122 12
Q ss_pred hhhCCCHHHHHHHHHHHHHHHHHHHh-hcCccChHhHHHHHHHHHHhccCHHHHHHH
Q 003418 308 EELHFDPQKASEIHEEIYRQKLQQCV-ADGELNDEDVAALLRLRVMLCVPQQTVEAA 363 (821)
Q Consensus 308 ~~L~fd~e~a~e~hk~iYr~kL~q~v-s~~~lsded~~~L~~lr~lL~I~~~~V~~a 363 (821)
.. ++++....+=.-.+ +++ +||.+++.+...|.++...|+||.+++..+
T Consensus 77 ~~--~~~e~r~~ll~~L~-----~IA~ADG~i~~~E~~lLr~ia~~Lgls~~d~~~~ 126 (133)
T 2h5n_A 77 AR--MDEERKKYVASYLG-----VIMASDGDIDDNELALWTLISTLCGLPTMTVMEA 126 (133)
T ss_dssp HT--SCHHHHHHHHHHHH-----HHSCBTTBCCHHHHHHHHHHHHHHTCCCCCHHHH
T ss_pred Hc--CCHHHHHHHHHHHH-----HHhhcCCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 22 34555555544443 344 399999999999999999999999998433
No 3
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=92.88 E-value=0.75 Score=44.33 Aligned_cols=110 Identities=13% Similarity=0.148 Sum_probs=73.0
Q ss_pred HHHHHhcccCCCCCChHHHHHHHHHHHHcCCChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhccchHHHHHHHhhhhCC
Q 003418 233 YRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHF 312 (821)
Q Consensus 233 Y~~yL~~~l~~g~l~~~~~~~L~~LknilGL~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a~~ka~~lq~lc~~L~f 312 (821)
..+-+.-+-.+|+++.+|.+.+.++-..+|+++.+...+.. .. ...+...+.+.+-...+-
T Consensus 33 ~~all~vAkADG~v~~~E~~~i~~~~~~~~l~~~~~~~l~~---------------~~----~~~~l~~~~~~i~~~~~~ 93 (161)
T 2ou3_A 33 MKSVLTCAKADGVISPEEKDWALGFCASWGVADWVIEDLKT---------------YE----ADEALEEVIARSPQVSMA 93 (161)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHTTCCHHHHHHHHH---------------CC----CCSCHHHHHTTCTTGGGC
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHhh---------------cc----CCCCHHHHHHHHHHHhcc
Confidence 33333333389999999999999999999999776654433 11 112223333332222211
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCccChHhHHHHHHHHHHhccCHHHHHHHHHhhhh
Q 003418 313 DPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICG 369 (821)
Q Consensus 313 d~e~a~e~hk~iYr~kL~q~vs~~~lsded~~~L~~lr~lL~I~~~~V~~ah~d~~g 369 (821)
. ..+.+.-+.-..+||.++..+...|.++...|+|+.+++..+....-.
T Consensus 94 ~--------~~~l~~l~~vA~ADG~~~~~E~~~L~~iA~~Lgls~~~~~~l~~~~~~ 142 (161)
T 2ou3_A 94 Q--------RDILLSAIWVSAADGELHEKEKAKIRKMATILGIKEEIVDQLEQLYYY 142 (161)
T ss_dssp H--------HHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1 114444444556799999999999999999999999999888766543
No 4
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=91.78 E-value=1.7 Score=41.78 Aligned_cols=105 Identities=9% Similarity=0.077 Sum_probs=75.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchhhhhccHHH
Q 003418 591 AEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESL 670 (821)
Q Consensus 591 l~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L~~~i~~~~ 670 (821)
+..+-+||..|+++.+.+..+..+++++++....++. ..+..+..++ ++...- .++.
T Consensus 37 l~vAkADG~v~~~E~~~i~~~~~~~~l~~~~~~~l~~---------------~~~~~~l~~~--~~~i~~----~~~~-- 93 (161)
T 2ou3_A 37 LTCAKADGVISPEEKDWALGFCASWGVADWVIEDLKT---------------YEADEALEEV--IARSPQ----VSMA-- 93 (161)
T ss_dssp HHHHHSSSCCCHHHHHHHHHHHHHTTCCHHHHHHHHH---------------CCCCSCHHHH--HTTCTT----GGGC--
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHhh---------------ccCCCCHHHH--HHHHHH----Hhcc--
Confidence 3778889999999999999999999999997766554 2222333321 112111 1111
Q ss_pred HHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhcCCCHHHHHHHHHHHH
Q 003418 671 RENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELA 718 (821)
Q Consensus 671 r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L~L~~ekAk~Il~~~~ 718 (821)
+..+.+..+.=++.+|..+..+.++++++...|||+......+.....
T Consensus 94 ~~~~l~~l~~vA~ADG~~~~~E~~~L~~iA~~Lgls~~~~~~l~~~~~ 141 (161)
T 2ou3_A 94 QRDILLSAIWVSAADGELHEKEKAKIRKMATILGIKEEIVDQLEQLYY 141 (161)
T ss_dssp HHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 222677777778889998888889999999999999999877755544
No 5
>2jxu_A TERB, KP-TERB; tellurite resistance protein, plasmid, unknown function; NMR {Klebsiella pneumoniae ntuh-k2044}
Probab=91.31 E-value=0.76 Score=43.52 Aligned_cols=115 Identities=11% Similarity=0.171 Sum_probs=75.2
Q ss_pred HHHHHHhcccCCCCCChHHHHHHHHHHHHc-CCChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhccchHHHHHHHhhhh
Q 003418 232 LYRAYVTDSLSGGRMEESKLAALNQLRNIF-GLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEEL 310 (821)
Q Consensus 232 lY~~yL~~~l~~g~l~~~~~~~L~~Lknil-GL~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a~~ka~~lq~lc~~L 310 (821)
+...-+.-+-.+|++++.|...+.++=.-+ ++++.+...+. .+|++.. ..+. ++.......+++.++. +
T Consensus 34 ~~al~~~vA~ADG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~-----~~~~~~~-~~~~---~~~~~g~~~~~~~i~~-~ 103 (153)
T 2jxu_A 34 TVAVCARIAVASDGVSSEEKQKMIGFLRSSEELKVFDTAEVI-----EFFNKLV-TSFD---FDLEIGKGETMKYILA-L 103 (153)
T ss_dssp HHHHHHHHHCCSSSCCSHHHHHHHHHHHHSGGGSSCCHHHHH-----HHHHHHH-HHTT---TCHHHHHHHHHHHHHC-C
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCcccCchhHHHHH-----HHHHHHH-HhcC---cchhhhHHHHHHHHHH-H
Confidence 344444445589999999999999887765 89877655443 2333222 1111 1110123457888888 7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCccChHhHHHHHHHHHHhccCHHHH
Q 003418 311 HFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTV 360 (821)
Q Consensus 311 ~fd~e~a~e~hk~iYr~kL~q~vs~~~lsded~~~L~~lr~lL~I~~~~V 360 (821)
+-+|+.+ ..+|+--+.=..+||.++..+...|..+...|+|+.+++
T Consensus 104 ~~~~~~~----~~~l~~~~~vA~ADG~~~~~E~~~L~~ia~~Lgl~~~~~ 149 (153)
T 2jxu_A 104 KDQPEAA----QLALRVGIAVAKSDGNFDDDEKSAVREIARSLGFDPAEF 149 (153)
T ss_dssp SSSHHHH----HHHHHHHHHHHTTTTSCSSTHHHHHHHHHHHTTSCSSCC
T ss_pred hCCHHHH----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCcCHHHH
Confidence 6677664 344533333334599999999999999999999998764
No 6
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=84.04 E-value=11 Score=34.39 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=65.8
Q ss_pred hhcCCChHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003418 566 GILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQG 645 (821)
Q Consensus 566 ~ILGL~~kE~~~Ih~~va~~ayrqql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g 645 (821)
-++-|+..|.......+--.+|..-++.--++|.|+-++-..|.+|+..|+++.+.=...++.+.....-..|...+..+
T Consensus 9 ~~~d~s~~e~~~~l~~LEleAY~svlrAf~AqG~Lsweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~Ire~~~g~ 88 (102)
T 1uz3_A 9 TLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGP 88 (102)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCS
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhcchHHHHHHHHHhcCC
Confidence 36788999999988899999999999999999999999999999999999999997777666665533333344455555
Q ss_pred C
Q 003418 646 K 646 (821)
Q Consensus 646 ~ 646 (821)
.
T Consensus 89 ~ 89 (102)
T 1uz3_A 89 N 89 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 7
>2jxu_A TERB, KP-TERB; tellurite resistance protein, plasmid, unknown function; NMR {Klebsiella pneumoniae ntuh-k2044}
Probab=82.40 E-value=3.7 Score=38.75 Aligned_cols=111 Identities=10% Similarity=0.102 Sum_probs=77.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH--HHHHHHHhccchh
Q 003418 586 AFRQQAEVILADGQLTKARIEQLNEVQKQV-GLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNI--KQIRELKEASVDL 662 (821)
Q Consensus 586 ayrqql~~~L~~G~Ld~a~a~~L~~Iq~~L-gl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~--~~V~eL~~~gv~L 662 (821)
++.=.+..+-+||..+.++.+.+..+-.++ ++++.....++.-..+-+ .. -.+.+ .-..-++.++- +
T Consensus 34 ~~al~~~vA~ADG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~-~~--------~~~~~~~g~~~~~~~i~~-~ 103 (153)
T 2jxu_A 34 TVAVCARIAVASDGVSSEEKQKMIGFLRSSEELKVFDTAEVIEFFNKLV-TS--------FDFDLEIGKGETMKYILA-L 103 (153)
T ss_dssp HHHHHHHHHCCSSSCCSHHHHHHHHHHHHSGGGSSCCHHHHHHHHHHHH-HH--------TTTCHHHHHHHHHHHHHC-C
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHH-Hh--------cCcchhhhHHHHHHHHHH-H
Confidence 344556677789999999999999999998 888766665555443332 11 11222 11222222222 1
Q ss_pred hhhccHHHHHHHHHHHHHHHhhcCCCCCchHHHHhhhhhhcCCCHH
Q 003418 663 DNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAE 708 (821)
Q Consensus 663 ~~~i~~~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~~~L~L~~e 708 (821)
.. ..+.|..++.-.+.=+..+|..+..+..+++++...|||+..
T Consensus 104 ~~--~~~~~~~~l~~~~~vA~ADG~~~~~E~~~L~~ia~~Lgl~~~ 147 (153)
T 2jxu_A 104 KD--QPEAAQLALRVGIAVAKSDGNFDDDEKSAVREIARSLGFDPA 147 (153)
T ss_dssp SS--SHHHHHHHHHHHHHHHTTTTSCSSTHHHHHHHHHHHTTSCSS
T ss_pred hC--CHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCcCHH
Confidence 11 256699999999999999999988889999999999999853
No 8
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=76.70 E-value=27 Score=33.32 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=64.7
Q ss_pred hhcCCChHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003418 566 GILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQG 645 (821)
Q Consensus 566 ~ILGL~~kE~~~Ih~~va~~ayrqql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g 645 (821)
+.|.|+..|+......+--.+|.--++.--++|.|+.++-..|.+|+..|+++.+.=...++.......-.-|...+..+
T Consensus 1 ~~ld~~~~e~~~~lr~LEleAY~svl~Af~AqG~LSweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~I~~~~~g~ 80 (133)
T 2fmm_E 1 GPLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGP 80 (133)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCHHHHHHHHHHHCS
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhHHHHHHHHHhhcCC
Confidence 35778999999999999999999999999999999999999999999999999998777766665533333344454443
No 9
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=51.41 E-value=1e+02 Score=28.21 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCccChHhHHHHHHHHHHhccCHHHHHHHHHhhhhhhHHHHHHHHHhcC
Q 003418 317 ASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSG 383 (821)
Q Consensus 317 a~e~hk~iYr~kL~q~vs~~~lsded~~~L~~lr~lL~I~~~~V~~ah~d~~g~lf~k~V~eAl~~g 383 (821)
.+.+.-+.|..-|..+-+.|-||-+...-|-.+|..|+|+++.=-...+-.+..--=+.+.+.+.++
T Consensus 22 l~~LEleAY~svlrAf~AqG~Lsweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~Ire~~~g~ 88 (102)
T 1uz3_A 22 LRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGP 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhcchHHHHHHHHHhcCC
Confidence 3666778999999999998889999999999999999999987655555555555555555655543
No 10
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=38.11 E-value=44 Score=30.66 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=33.5
Q ss_pred HHHHHHhhhhCCCHHHHHHHHHHHHHHHHHHHhhcCccChHhHHH
Q 003418 301 SFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAA 345 (821)
Q Consensus 301 ~~lq~lc~~L~fd~e~a~e~hk~iYr~kL~q~vs~~~lsded~~~ 345 (821)
.-++.||..|+++|..-..+++.+.+.. ...|.|...|+..
T Consensus 43 ~~E~~LCs~lrL~P~~YL~iK~~Li~E~----~k~g~lkk~dA~~ 83 (108)
T 2cuj_A 43 EKEKELCQVVRLVPGAYLEYKSALLNEC----HKQGGLRLAQARA 83 (108)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH----HHSSCCCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH----HHcCCCcHHHHHH
Confidence 3588999999999999999999999755 4567788776543
No 11
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=36.43 E-value=49 Score=29.15 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=32.0
Q ss_pred HHHHHHhhhhCCCHHHHHHHHHHHHHHHHHHHhh-cCccChHhHH
Q 003418 301 SFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVA-DGELNDEDVA 344 (821)
Q Consensus 301 ~~lq~lc~~L~fd~e~a~e~hk~iYr~kL~q~vs-~~~lsded~~ 344 (821)
.-++.||..|+++|..-..+...+.+.. +. .+.|+..|..
T Consensus 25 ~~E~~LC~~lrL~P~~YL~~K~~Li~E~----~k~g~~lkk~da~ 65 (88)
T 2elj_A 25 NDEQQLCIQLKILPKPYLVLKEVMFREL----LKTGGNLSKSACR 65 (88)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH----HHHSSCCCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH----HHhCCCccHHHHH
Confidence 4588999999999999999999999755 34 4558777653
No 12
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=35.03 E-value=2.9e+02 Score=26.54 Aligned_cols=97 Identities=9% Similarity=0.211 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH--------Hhccchh-----hhhccHHHH
Q 003418 605 IEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIREL--------KEASVDL-----DNMISESLR 671 (821)
Q Consensus 605 a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL--------~~~gv~L-----~~~i~~~~r 671 (821)
..+++.+|.+||||+. ....-..+|+.-+.. -+-.|+ +++-|..- .+....+ +..++...-
T Consensus 13 ~~~I~~~~~~L~L~~~-v~~~A~~l~~~~~~~----~~~~gr-~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~~~~i 86 (200)
T 1ais_B 13 LSELDRITAQLKLPRH-VEEEAARLYREAVRK----GLIRGR-SIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEI 86 (200)
T ss_dssp HHHHHHHHHHHTCCHH-HHHHHHHHHHHHHTT----TTTTTC-CHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHH-HHHHHHHHHHHHHhC----CCcCCC-CHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHH
Confidence 5679999999999964 333444455543332 123343 44443321 1222222 122677788
Q ss_pred HHHHHHHHHHHhhcCCCC--CchHHHHhhhhhhcCCCHH
Q 003418 672 ENLFKKTVDEIFSSGTGE--FDAEEVYEKIPADLSINAE 708 (821)
Q Consensus 672 ~~lFkk~V~eaissGt~~--~d~~e~~ekl~~~L~L~~e 708 (821)
++.|+... +.+.-.... .++...+.++...|+++.+
T Consensus 87 ~~~~~~l~-~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~ 124 (200)
T 1ais_B 87 GRSYRFIA-RNLNLTPKKLFVKPTDYVNKFADELGLSEK 124 (200)
T ss_dssp HHHHHHHH-HHTTCCTTTTCCCGGGGHHHHHHHHTCCHH
T ss_pred HHHHHHHH-HHhcccCCcCCCCHHHHHHHHHHHcCCCHH
Confidence 88888755 445554555 7889999999999999965
No 13
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=34.73 E-value=3e+02 Score=26.53 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhc---cchHHHHHHHhhhhCCCHHHHHHHHHHHHHHHH
Q 003418 253 ALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAA---DSKASFLQSLCEELHFDPQKASEIHEEIYRQKL 329 (821)
Q Consensus 253 ~L~~LknilGL~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a---~~ka~~lq~lc~~L~fd~e~a~e~hk~iYr~kL 329 (821)
.+.++.+.+|.+..+...+ |+.-++ .+ .++.. .++.+++.++|..|++++++ ...-..+++.-+
T Consensus 71 ~l~di~~~~~v~~~~i~~~--------~~~l~~-~L---~~~~~~~~~~p~~~i~r~~~~L~l~~~v-~~~A~~i~~~~~ 137 (200)
T 1ais_B 71 TLDEIADIARVDKKEIGRS--------YRFIAR-NL---NLTPKKLFVKPTDYVNKFADELGLSEKV-RRRAIEILDEAY 137 (200)
T ss_dssp CHHHHHHHTTSCHHHHHHH--------HHHHHH-HT---TCCTTTTCCCGGGGHHHHHHHHTCCHHH-HHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHH--------HHHHHH-Hh---cccCCcCCCCHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHH
Confidence 3556667778776655544 333221 11 22332 46789999999999999875 345556665554
Q ss_pred HH
Q 003418 330 QQ 331 (821)
Q Consensus 330 ~q 331 (821)
..
T Consensus 138 ~~ 139 (200)
T 1ais_B 138 KR 139 (200)
T ss_dssp HT
T ss_pred Hc
Confidence 43
No 14
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=34.46 E-value=2.1e+02 Score=27.25 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCccChHhHHHHHHHHHHhccCHHHHHHHHHhhhhhhHHHHHHHHHhc
Q 003418 317 ASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISS 382 (821)
Q Consensus 317 a~e~hk~iYr~kL~q~vs~~~lsded~~~L~~lr~lL~I~~~~V~~ah~d~~g~lf~k~V~eAl~~ 382 (821)
.+.+.-+-|..-|..+-+.|-||-+...-|-.+|..|.|+++.=-...+-.+..---+.+.+.+.+
T Consensus 14 lr~LEleAY~svl~Af~AqG~LSweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~I~~~~~g 79 (133)
T 2fmm_E 14 LRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSG 79 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhHHHHHHHHHhhcC
Confidence 356677889999999999889999999999999999999997654444444444444444454433
No 15
>2zko_A NS1, NS1A, non-structural protein 1; dsRNA, protein-RNA interaction; 1.70A {Influenza a virus} PDB: 2z0a_A 1ns1_A 1ail_A 3m8a_A
Probab=34.44 E-value=1.4e+02 Score=25.24 Aligned_cols=39 Identities=36% Similarity=0.514 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCccChHhHHHHHHHHH
Q 003418 311 HFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRV 351 (821)
Q Consensus 311 ~fd~e~a~e~hk~iYr~kL~q~vs~~~lsded~~~L~~lr~ 351 (821)
++|++...-||-.-|-=-+.+-+++..++|+ .||+++|+
T Consensus 3 hMdsnTvssFQvdcflWHvrkrfadq~lgDA--PFldRlrR 41 (73)
T 2zko_A 3 HMDPNTVSSFQVDCFLWHVRKRVADQELGDA--PFLDRLRR 41 (73)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHTTCCCH--HHHHHHHH
T ss_pred CCCCCcceeeeeeehhHHHHHHhhhcccccc--hHHHHHHH
Confidence 6899999999999998889999999999998 99999987
No 16
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=31.50 E-value=4e+02 Score=28.75 Aligned_cols=114 Identities=15% Similarity=0.146 Sum_probs=61.8
Q ss_pred HHHHHHHH---HHHhhcCCCCHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcc
Q 003418 584 EQAFRQQA---EVILADGQLTKA-RIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEAS 659 (821)
Q Consensus 584 ~~ayrqql---~~~L~~G~Ld~a-~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~g 659 (821)
+..|+++. -.+..+..|+.+ |...|+.+..+ +|+..-...........+.+.+..+-..| .|++++..++...
T Consensus 184 E~~~~~~aL~rl~I~~d~~Ls~~eK~~~l~~l~~q--lP~~~r~~~~~~~~~~~l~~~~~~l~~~g-~s~~~~~~~R~~~ 260 (332)
T 2es4_D 184 EQRRQRHDLERIRIANDTTLSPEQKAARLAALDAQ--LTPDERAQQAALHAQQDAVTKIADLQKAG-ATPDQMRAQIAQT 260 (332)
T ss_dssp HHHHHHHHHHHHHHHCCC-CC--CHHHHHHHHTTS--CCHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHh
Confidence 55666665 335556779888 89999988665 67776433333333345554444454566 6999999999655
Q ss_pred chh----------hhhccHHHHHHHHHHHHHHHhhcCCCCCchHHHHhhhh
Q 003418 660 VDL----------DNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIP 700 (821)
Q Consensus 660 v~L----------~~~i~~~~r~~lFkk~V~eaissGt~~~d~~e~~ekl~ 700 (821)
|.- .+.-.-..|..=|..+-..+..+|..+-+-+..+..|+
T Consensus 261 vG~EaA~RL~~Ldqqra~wq~r~~~Y~~eR~~I~~~~Ls~~~kq~qI~~LR 311 (332)
T 2es4_D 261 LGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARIAQLR 311 (332)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 544 11133444455555554444433433222233444443
No 17
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=29.57 E-value=3.3e+02 Score=26.80 Aligned_cols=167 Identities=13% Similarity=0.169 Sum_probs=91.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHH-hccchhhhhccH-----HHHHHHHHH
Q 003418 606 EQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGK--LNIKQIRELK-EASVDLDNMISE-----SLRENLFKK 677 (821)
Q Consensus 606 ~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~--Lt~~~V~eL~-~~gv~L~~~i~~-----~~r~~lFkk 677 (821)
+.|..++++.|++++...+.+ +.+..++. +..|+ ||.+.+..+. .+|+++...+.. +....-|..
T Consensus 8 ~~i~~~r~~~~~tq~~la~~~--~s~~~is~-----~e~g~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~l~~ 80 (293)
T 2qfc_A 8 SEIKKIRVLRGLTQKQLSENI--CHQSEVSR-----IESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKD 80 (293)
T ss_dssp HHHHHHHHHHTCCTTTTTTTT--SCHHHHHH-----HHTSSSCCCHHHHHHHTTTSCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH--cCHHHHHH-----HHCCCCCCCHHHHHHHHHHhCcCHHHHhccccccchhHHHHHHH
Confidence 457889999999998777666 77777776 57774 8888888887 688888655332 222333334
Q ss_pred HHHHHhhcCCCCCchHHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhccccCcC
Q 003418 678 TVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVPA 757 (821)
Q Consensus 678 ~V~eaissGt~~~d~~e~~ekl~~~L~L~~ekAk~Il~~~~~~r~~n~l~qAva~lrq~~~~e~vk~L~kLl~~~~~vps 757 (821)
.+...+..| +.++.++.+...+.+..... ........+..-+.....+++..++...+++.+....-
T Consensus 81 ~~~~~~~~~----~y~~A~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--- 147 (293)
T 2qfc_A 81 QVIMLCKQK----RYKEIYNKVWNELKKEEYHP------EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT--- 147 (293)
T ss_dssp HHHHHHHTT----CHHHHHHHHHHHHHTCCCCH------HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC---
T ss_pred HHHHHHHhh----hHHHHHHHHHHHhccccCCh------hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc---
Confidence 445555544 33444333333333221100 00111122222444456677899999999998875432
Q ss_pred CCCCCCchhhHHHHHHHHhcCCCChHHHHHHHHHh
Q 003418 758 EPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLL 792 (821)
Q Consensus 758 ~~l~w~~~~El~dl~~iy~~~~~~~ek~~~Lq~~L 792 (821)
....|....=+..+=.+|...+.-++-+..++.++
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23344322223334455665554444344444443
No 18
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=26.79 E-value=1.2e+02 Score=28.48 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=54.9
Q ss_pred HHhHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003418 581 GLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELK 656 (821)
Q Consensus 581 ~va~~ayrqql~~~L~~G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~ 656 (821)
+-.--+|+++++.+-..|+||.++-.-|-++..+.+ |.|---+++|.+.-+.. +..+..+|.+|.|+++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~plTEERRKeLVK~akk~a---EeaKVAIRNIRRDAnd~-lKKl~KdkeISEDe~kr~e 85 (121)
T 3lf9_A 14 DKSVEALKNNLSKVRTGGGGTEERRKDLVKIVRGEA---EGGRVAVRNIARDAAND-LAALGKDKEVNWFDISQAL 85 (121)
T ss_dssp HHHHHHHHHHHHHCCCSSBCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHGGGCTTSCHHHHHHHH
T ss_pred HHHHHHHHHhhHhhcCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHH-HHHhhhcCCCCHHHHHhHH
Confidence 344568999999987778899998888888877764 66666688888865543 3346678999999988765
No 19
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=26.09 E-value=47 Score=29.37 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=31.9
Q ss_pred HHHHHHhhhhCCCHHHHHHHHHHHHHHHHHHHhhcCccChHhH
Q 003418 301 SFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDV 343 (821)
Q Consensus 301 ~~lq~lc~~L~fd~e~a~e~hk~iYr~kL~q~vs~~~lsded~ 343 (821)
.-+..||..|+++|..-..+...+.+.. ...|.|...|+
T Consensus 25 ~~E~~LC~~lrL~P~~YL~~K~~li~E~----~~~g~l~k~da 63 (90)
T 2aqe_A 25 EKEKELCQVVRLVPGAYLEYKSALLNEC----HKQGGLRLAQA 63 (90)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH----HHHSCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH----HHcCCCcHHHH
Confidence 4588999999999999999999999755 44677876654
No 20
>2y6w_A BCL-2-like protein 2; apoptosis; HET: PGE; 2.00A {Homo sapiens} PDB: 1mk3_A 1zy3_A
Probab=25.12 E-value=1.8e+02 Score=28.48 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=60.1
Q ss_pred cccHHHHHHHHHHhhhc--cccc-ccCCCcccccccCchHHHHHHhhhhhcCCChHHHHHHHHHHhHHHHHHHHHHHhhc
Q 003418 521 ERDRTDLYKTYLLYCLT--GEVT-KIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILAD 597 (821)
Q Consensus 521 ~~d~~~LYr~YL~~cls--g~~~-~~p~g~~i~~~kdd~e~~~L~qL~~ILGL~~kE~~~Ih~~va~~ayrqql~~~L~~ 597 (821)
..+...|.+.|+.||+. |-.. ..| | .+-+..++....+.++...=++
T Consensus 20 ~~~~~~L~~dYi~y~l~~~g~~~~~~~-~---------------------~~p~~~~v~~~Lr~~gdele~~-------- 69 (177)
T 2y6w_A 20 APDTRALVADFVGYKLRQKGYVSGAGP-G---------------------EGPAADPLHQAMRAAGDEFETR-------- 69 (177)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSCCSSST-T---------------------SSCCSSHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCC-C---------------------CCCchhHHHHHHHHHHHHHHHH--------
Confidence 45778999999999994 3211 011 0 1223334444444554443332
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchh
Q 003418 598 GQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDL 662 (821)
Q Consensus 598 G~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L 662 (821)
--.++++++.+|.++++.+.. .+.+.+. .++.|| +|=-+|..|-..+..|
T Consensus 70 ------~~~~f~~~~~~l~i~~~~~~~----~f~~Va~----elF~dG-inWGRIVaLfaF~g~L 119 (177)
T 2y6w_A 70 ------FRRTFSDLAAQLHVTPGSAQQ----RFTQVSD----ELFQGG-PNWGRLVAFFVFGAAL 119 (177)
T ss_dssp ------HHHHHHHHHHHHHHCGGGHHH----HHHHHHH----HHHHCC-CHHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHhcCCCCccHHH----HHHHHHH----HHhcCC-CCHHHHHHHHHHHHHH
Confidence 123478899999998886633 3334444 488999 8999999999766666
No 21
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=24.85 E-value=1.4e+02 Score=24.78 Aligned_cols=32 Identities=13% Similarity=0.261 Sum_probs=28.0
Q ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003418 598 G-QLTKARIEQLNEVQKQVGLPSEYAQKIIKNI 629 (821)
Q Consensus 598 G-~Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~i 629 (821)
| .|++..++.|....++.|+|++.....++.+
T Consensus 15 gr~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a 47 (78)
T 2zc2_A 15 GRMLSPFELEDLQKTVSDDKTDPDLVRSALREA 47 (78)
T ss_dssp TSCCCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5 7999999999999999999999877776655
No 22
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=23.01 E-value=65 Score=30.24 Aligned_cols=30 Identities=30% Similarity=0.487 Sum_probs=25.5
Q ss_pred HHHHHHHHcCCChhhHHHHHH-HHhhHHHHH
Q 003418 253 ALNQLRNIFGLGKRESEAIIV-DVTSKVYRK 282 (821)
Q Consensus 253 ~L~~LknilGL~~~ea~~ih~-ev~~~lyR~ 282 (821)
.|..+|.+|||+-.||+.++- ++-.+-|++
T Consensus 7 ELkalR~ilgLt~~EaA~~i~~~vs~rtWQq 37 (120)
T 1s4k_A 7 ELQALRRIFDMTIEECTIYITQDNNSATWQR 37 (120)
T ss_dssp HHHHHHHHTTCCHHHHHHHTSSSCCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHhccCCHHHHHH
Confidence 588899999999999998876 577888883
No 23
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.30A {Synechocystis SP} PDB: 2l06_A
Probab=21.81 E-value=1.2e+02 Score=29.40 Aligned_cols=42 Identities=24% Similarity=0.409 Sum_probs=34.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHH-----------HHHHHHHhcCCCCHHH-HHHHH
Q 003418 615 VGLPSEYAQKIIKNITTTKMA-----------AAIETAVAQGKLNIKQ-IRELK 656 (821)
Q Consensus 615 Lgl~~e~a~kiik~iy~~Kl~-----------~~ie~~~~~g~Lt~~~-V~eL~ 656 (821)
=+++++..+.+|+.+|+|.+. ..+|+.+.+|.||..+ |+.|.
T Consensus 18 ~~~s~~e~~~vI~AaYRQVf~~~~~~~~~~r~~~lESql~nG~ItVReFIR~La 71 (147)
T 3osj_A 18 PGLSALEKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISMKEFVRRLA 71 (147)
T ss_dssp TTCCHHHHHHHHHHHHHHHHSSCCCGGGCHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCcchhhhhcccccHHHHHHcCCccHHHHHHHHH
Confidence 367899999999999998875 2588999999999988 66665
No 24
>3ohw_B Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.70A {Synechocystis SP}
Probab=21.45 E-value=1.2e+02 Score=29.40 Aligned_cols=41 Identities=17% Similarity=0.294 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHHHHH------------HHHHHHHhcCCCCHHH-HHHHH
Q 003418 616 GLPSEYAQKIIKNITTTKMA------------AAIETAVAQGKLNIKQ-IRELK 656 (821)
Q Consensus 616 gl~~e~a~kiik~iy~~Kl~------------~~ie~~~~~g~Lt~~~-V~eL~ 656 (821)
..+++..+.+|+.+|+|.+. ..+|+.+.+|.||..+ |+.|.
T Consensus 19 ~~~~~~~~~vI~AaYRQVf~~~~~~~~~~~r~~~lESqlrnG~IsVReFVR~La 72 (148)
T 3ohw_B 19 TYDKVAVKNAIRAAYRQVFERDLEPYIINSEFTALESKLSNNEINVKEFIEGLG 72 (148)
T ss_dssp --CHHHHHHHHHHHHHHHHSSCCCHHHHHHHTHHHHHHHHTTSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCccchhhhhcccccHHHHHHcCCcCHHHHHHHHH
Confidence 56788889999999998874 4678899999999888 66665
No 25
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=21.38 E-value=2e+02 Score=28.28 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=55.3
Q ss_pred hhcCCCCHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccchhhhhccHHHH
Q 003418 595 LADGQLTKARIEQLNEVQKQVGL---PSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLR 671 (821)
Q Consensus 595 L~~G~Ld~a~a~~L~~Iq~~Lgl---~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V~eL~~~gv~L~~~i~~~~r 671 (821)
+++-.+|+.-.+-|.+|+.-.+. +...|+|++|+|-+--+.-+ -++..+.+|++|..-+.+++
T Consensus 3 va~~fIDdtsselLD~lyrl~K~~t~nkkeA~kv~KniIKi~vKig--vl~rn~qf~~eEl~~~~~fr------------ 68 (161)
T 3f4m_A 3 VAHLFIDETSSEVLDELYRVSKEYTHSRPQAQRVIKDLIKVAIKVA--VLHRNGSFGPSELALATRFR------------ 68 (161)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH--HHHHTTCCCHHHHHHHHHHH------------
T ss_pred hhHHhcCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh--eeeecCCCCHHHHHHHHHHH------------
Confidence 34456788888888888765554 88999999999988655332 26788999999988776432
Q ss_pred HHHHHHHHHHHhhcCCCCCchHH
Q 003418 672 ENLFKKTVDEIFSSGTGEFDAEE 694 (821)
Q Consensus 672 ~~lFkk~V~eaissGt~~~d~~e 694 (821)
+-|+...--++|=+.-+|+.+.
T Consensus 69 -~k~~~~amt~iSF~eVdfTfD~ 90 (161)
T 3f4m_A 69 -QKLRQGAMTALSFGEVDFTFEA 90 (161)
T ss_dssp -HHHHHHHHHHHHHTSTTSCCCH
T ss_pred -HHHHHHHHHHhhhhccCccccH
Confidence 2233334455555666666553
No 26
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=20.80 E-value=3.7e+02 Score=22.69 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHhhHHHHHHHHhhhcCCcchhccchHHHHHHHhhhhCCCHHHHH
Q 003418 252 AALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKAS 318 (821)
Q Consensus 252 ~~L~~LknilGL~~~ea~~ih~ev~~~lyR~rL~e~v~sg~le~a~~ka~~lq~lc~~L~fd~e~a~ 318 (821)
..|..++...||+-.+.+... .+.+..+.+.. +|. ......+.+..||+-|+++++-..
T Consensus 4 ~~l~~~r~~~gltq~~lA~~~-gis~~~i~~~e-----~g~--~~~p~~~~l~~ia~~l~v~~~~l~ 62 (111)
T 1b0n_A 4 QRIKQYRKEKGYSLSELAEKA-GVAKSYLSSIE-----RNL--QTNPSIQFLEKVSAVLDVSVHTLL 62 (111)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH-TCCHHHHHHHH-----TTC--CSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHH-----cCC--CCCCCHHHHHHHHHHHCcCHHHHh
Confidence 457788888899877776633 35555555433 220 012236688999999999987654
No 27
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=20.64 E-value=1.8e+02 Score=24.32 Aligned_cols=57 Identities=9% Similarity=0.202 Sum_probs=39.9
Q ss_pred HHHHHHHhhcCCCCHHHH-HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 003418 588 RQQAEVILADGQLTKARI-EQLNEVQKQV-GLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQI 652 (821)
Q Consensus 588 rqql~~~L~~G~Ld~a~a-~~L~~Iq~~L-gl~~e~a~kiik~iy~~Kl~~~ie~~~~~g~Lt~~~V 652 (821)
-+++++.+.++ +++.+ ++|.++|+.| +.=...|..++..-....+.. +..+ .||+.|
T Consensus 12 v~~ve~~l~~n--t~~~I~~~l~~~C~~lp~~~~~~C~~~V~~y~~~iI~~-----l~~~-~~P~~I 70 (77)
T 1of9_A 12 INTLENLLTTK--GADKVKDYISSLCNKASGFIATLCTKVLDFGIDKLIQL-----IEDK-VDANAI 70 (77)
T ss_dssp HHHHHHHCSSS--CSHHHHHHHHHHHTTCSSTTHHHHHHHHHHCHHHHHHH-----HHHT-CCHHHH
T ss_pred HHHHHHHHHHC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH-----HHhC-CCHHHH
Confidence 35778888887 77766 9999999999 666788888886544444333 3444 477765
No 28
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=20.61 E-value=6.1e+02 Score=24.84 Aligned_cols=166 Identities=11% Similarity=0.128 Sum_probs=94.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHH-hccchhhhhcc-----HHHHHHHHHH
Q 003418 606 EQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQG--KLNIKQIRELK-EASVDLDNMIS-----ESLRENLFKK 677 (821)
Q Consensus 606 ~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g--~Lt~~~V~eL~-~~gv~L~~~i~-----~~~r~~lFkk 677 (821)
..|..++++.||+++...+.+ +.+..++. ++.| .||.+.+..+. .+||++...+. .......|..
T Consensus 8 ~~i~~~R~~~~~tq~~la~~~--~s~~~~s~-----~e~g~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 80 (293)
T 3u3w_A 8 SEIKKIRVLRGLTQKQLSENI--CHQSEVSR-----IESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKD 80 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHTTT--SCHHHHHH-----HHTTSCCCCHHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHh--CCHHHHHH-----HHCCCCCCCHHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHH
Confidence 468899999999999887777 77777877 5777 48899888887 58888855422 1222333444
Q ss_pred HHHHHhhcCCCCCchH-HHHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhccccCc
Q 003418 678 TVDEIFSSGTGEFDAE-EVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVVSSLNDLLACDKAVP 756 (821)
Q Consensus 678 ~V~eaissGt~~~d~~-e~~ekl~~~L~L~~ekAk~Il~~~~~~r~~n~l~qAva~lrq~~~~e~vk~L~kLl~~~~~vp 756 (821)
.+...+..|. ++.. ..++++........+.- . ...-+.-.+...+.+++..++...+++.+... +
T Consensus 81 ~i~~~~~~~~--y~~a~~~~~~~l~~~~~~~~~~-~--------~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~---~ 146 (293)
T 3u3w_A 81 QVIMLCKQKR--YKEIYNKVWNELKKEEYHPEFQ-Q--------FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ---L 146 (293)
T ss_dssp HHHHHHHTTC--HHHHHHHHHHHHTTCCCCHHHH-H--------HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTC---C
T ss_pred HHHHHHHHhh--HHHHHHHHHHHhccccCChHHH-H--------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHh---c
Confidence 5666666542 3332 55555444333333321 0 01111112333345668899999999999843 2
Q ss_pred CCCCCCCchhhHHHHHHHHhcCCCChHHHHHHHHHh
Q 003418 757 AEPLSWELPDELADLFNIYMKSNPAPEKLTRLQYLL 792 (821)
Q Consensus 757 s~~l~w~~~~El~dl~~iy~~~~~~~ek~~~Lq~~L 792 (821)
.....|..-.=+..|-.+|.....-++-+..++.+|
T Consensus 147 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 147 TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp CCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 212222111113344456666665555455555555
No 29
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=20.59 E-value=3.6e+02 Score=24.45 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=48.1
Q ss_pred HHHHHHHHhhcCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003418 587 FRQQAEVILADGQ-LTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQG 645 (821)
Q Consensus 587 yrqql~~~L~~G~-Ld~a~a~~L~~Iq~~Lgl~~e~a~kiik~iy~~Kl~~~ie~~~~~g 645 (821)
.+..+...-..|. ++++....++++..++...|....-+-.+..-+.|-+.|..+++++
T Consensus 51 ~q~~~q~~q~~G~~~~~e~~~~l~~l~~~l~~n~~v~~~~~Ae~~l~~ll~~I~~iI~~~ 110 (122)
T 2oeq_A 51 IQLRLHEKQMRGAAILPDEIEQAQKAMALAQQNEKLARLMALEQQMSITIAEVQQIAMKP 110 (122)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667784 9999999999999999999999998888887788877777777655
Done!