BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003420
(821 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 12/174 (6%)
Query: 249 LQMIDLSRTQIKRLP-KFGYLKRLSRISIEGCKRFHNFHE-IKPRDSNTKSKPLFPVSLS 306
L+ + L+R ++ LP L RL +SI C E + D++ + + L V+L
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL--VNLQ 186
Query: 307 ELHLRDCPTLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSN-TKL 364
L L + ++ LP IA L+NL+ L + +S + + H L L EL+L T L
Sbjct: 187 SLRL-EWTGIRSLPASIANLQNLKSLKIR---NSPLSALGPAIHHLPKLEELDLRGCTAL 242
Query: 365 KSLPPL-SNLHRLRKLFLKNCELLEELP-KMNGLENLEVLDLSGCSKLVEFPKL 416
++ PP+ L++L LK+C L LP ++ L LE LDL GC L P L
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 64/140 (45%), Gaps = 23/140 (16%)
Query: 305 LSELHLRDCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKL 364
L EL +R CP L LP + L D SG L L+ L L T +
Sbjct: 152 LRELSIRACPELTELP-----EPLASTDASG-----------EHQGLVNLQSLRLEWTGI 195
Query: 365 KSLPP-LSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDLSGCSKLVEFPKL----KDF 419
+SLP ++NL L+ L ++N L P ++ L LE LDL GC+ L +P +
Sbjct: 196 RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 420 PKLELLDISNTGIKVVPSDI 439
+L L D SN + +P DI
Sbjct: 256 KRLILKDCSN--LLTLPLDI 273
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 44/187 (23%)
Query: 146 GDIELLKKLTVLEISGANSVQKIPDKLLDE--------MTKLQSLNLSGCQMKFLP-SLS 196
I L +L L I + ++P+ L + LQSL L ++ LP S++
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA 203
Query: 197 KLFNLRFLILRDCSSLQKL-PRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLS 255
L NL+ L +R+ S L L P I+ L +LE +DL G T+L +P
Sbjct: 204 NLQNLKSLKIRN-SPLSALGPAIHHLPKLEELDLRGCTALRNYP---------------- 246
Query: 256 RTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPT 315
P FG L R+ ++ C P D + ++ L +L LR C
Sbjct: 247 -------PIFGGRAPLKRLILKDCSNLLTL----PLDIHRLTQ------LEKLDLRGCVN 289
Query: 316 LKRLPHI 322
L RLP +
Sbjct: 290 LSRLPSL 296
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 30/189 (15%)
Query: 162 ANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLP-SLSKLFNLRFLILRDCSSLQKLPRI-- 218
A + ++PD + L++L L+ ++ LP S++ L LR L +R C L +LP
Sbjct: 113 AAGLXELPDTX-QQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLA 171
Query: 219 --------NELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRL-PKFGYLK 269
LV L+ + L T + P ++ Q+L+ + + + + L P +L
Sbjct: 172 STDASGEHQGLVNLQSLRLEW-TGIRSLPA-SIANLQNLKSLKIRNSPLSALGPAIHHLP 229
Query: 270 RLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFP--VSLSELHLRDCPTLKRLP-HIAGLK 326
+L + + GC N+ P+F L L L+DC L LP I L
Sbjct: 230 KLEELDLRGCTALRNY------------PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277
Query: 327 NLEVLDVSG 335
LE LD+ G
Sbjct: 278 QLEKLDLRG 286
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 14/88 (15%)
Query: 354 LRELNLSNTKLKSLPP-LSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDLSGCSKLVE 412
L L L+ L++LP +++L+RLR+L ++ C L ELP E L D SG
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELP-----EPLASTDASG------ 177
Query: 413 FPKLKDFPKLELLDISNTGIKVVPSDIS 440
+ + L+ L + TGI+ +P+ I+
Sbjct: 178 --EHQGLVNLQSLRLEWTGIRSLPASIA 203
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 144/322 (44%), Gaps = 53/322 (16%)
Query: 149 ELLKKLTVLEISG--ANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLIL 206
E L+ +T L ++G S+Q I + +T L+ LNL+G Q+ + LS L L L +
Sbjct: 41 EELESITKLVVAGEKVASIQGI-----EYLTNLEYLNLNGNQITDISPLSNLVKLTNLYI 95
Query: 207 -----RDCSSLQKLPRINELVRLE--IIDLSGATSLTFFPEQDLSKHQHL---------- 249
D S+LQ L + EL E I D+S +LT +L + +L
Sbjct: 96 GTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXT 155
Query: 250 --QMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNT----------KS 297
+ ++ +++K + L L +S+ ++ +I P S T +
Sbjct: 156 GLNYLTVTESKVKDVTPIANLTDLYSLSL----NYNQIEDISPLASLTSLHYFTAYVNQI 211
Query: 298 KPLFPVS----LSELHLRDCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISD-ESFHDLD 352
+ PV+ L+ L + + + L +A L L L++ GT+ ISD + DL
Sbjct: 212 TDITPVANXTRLNSLKIGNNK-ITDLSPLANLSQLTWLEI-GTNQ----ISDINAVKDLT 265
Query: 353 YLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCEL-LEELPKMNGLENLEVLDLSGCSKLV 411
L+ LN+ + ++ + L+NL +L LFL N +L E+ + GL NL L LS + +
Sbjct: 266 KLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLS-QNHIT 324
Query: 412 EFPKLKDFPKLELLDISNTGIK 433
+ L K + D +N IK
Sbjct: 325 DIRPLASLSKXDSADFANQVIK 346
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 19/187 (10%)
Query: 143 NGIGDIELLKKLTVLE--ISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFN 200
N + DI +L KLT LE I+ N + I L +T L L+L+G Q+K + +L+ L N
Sbjct: 182 NKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTN 239
Query: 201 LRFLILRD--CSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQ 258
L L L + S+L L + +L L++ GA ++ L+ L ++L+ Q
Sbjct: 240 LTDLDLANNQISNLAPLSGLTKLTELKL----GANQISNISP--LAGLTALTNLELNENQ 293
Query: 259 IKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKR 318
++ + LK L+ +++ F+N +I P S TK + LF S + D +L
Sbjct: 294 LEDISPISNLKNLTYLTL----YFNNISDISPVSSLTKLQRLF---FSNNKVSDVSSLAN 346
Query: 319 LPHIAGL 325
L +I L
Sbjct: 347 LTNINWL 353
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 72/359 (20%)
Query: 38 RLGLAGVVNEEDQRIALGRITQID---GMIKTICDPKKWDEVSTLLIDGDRLRLEVDEGF 94
RLG+ + D L +TQI+ + I K ++ +L++ +++ D
Sbjct: 50 RLGIKSI----DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI---ADITP 102
Query: 95 LARMKQLHALAIFNSGFKSLDLXXXXXXXXXXXXLPMKLLVLRSCNLL----NGIGDIEL 150
LA + L L +FN+ +D P+K L + N L N I DI
Sbjct: 103 LANLTNLTGLTLFNNQITDID--------------PLK--NLTNLNRLELSSNTISDISA 146
Query: 151 LKKLTVLE-ISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLI---- 205
L LT L+ ++ N V + K L +T L+ L++S ++ + L+KL NL LI
Sbjct: 147 LSGLTSLQQLNFGNQVTDL--KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 204
Query: 206 -LRDCSSLQKLPRINELV--RLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRL 262
+ D + L L ++EL ++ D+ SLT +L +DL+ QI L
Sbjct: 205 QISDITPLGILTNLDELSLNGNQLKDIGTLASLT-----------NLTDLDLANNQISNL 253
Query: 263 PKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVS-LSELHLRDCPTLKRLPH 321
L +L+ + + G + N PL ++ L+ L L + L+ +
Sbjct: 254 APLSGLTKLTELKL-GANQISNI------------SPLAGLTALTNLELNENQ-LEDISP 299
Query: 322 IAGLKNLEVLDVSGTSDSKFAISDES-FHDLDYLRELNLSNTKLKSLPPLSNLHRLRKL 379
I+ LKNL L + + ISD S L L+ L SN K+ + L+NL + L
Sbjct: 300 ISNLKNLTYLTLYFNN-----ISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWL 353
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 19/187 (10%)
Query: 143 NGIGDIELLKKLTVLE--ISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFN 200
N + DI +L KLT LE I+ N + I L +T L L+L+G Q+K + +L+ L N
Sbjct: 183 NKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTN 240
Query: 201 LRFLILRD--CSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQ 258
L L L + S+L L + +L L++ GA ++ L+ L ++L+ Q
Sbjct: 241 LTDLDLANNQISNLAPLSGLTKLTELKL----GANQISNISP--LAGLTALTNLELNENQ 294
Query: 259 IKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKR 318
++ + LK L+ +++ F+N +I P S TK + LF S + D +L
Sbjct: 295 LEDISPISNLKNLTYLTL----YFNNISDISPVSSLTKLQRLF---FSNNKVSDVSSLAN 347
Query: 319 LPHIAGL 325
L +I L
Sbjct: 348 LTNINWL 354
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 150/358 (41%), Gaps = 69/358 (19%)
Query: 38 RLGLAGVVNEEDQRIALGRITQID---GMIKTICDPKKWDEVSTLLIDGDRLRLEVDEGF 94
RLG+ + D L +TQI+ + I K ++ +L++ +++ D
Sbjct: 50 RLGIKSI----DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI---ADITP 102
Query: 95 LARMKQLHALAIFNSGFKSLDLXXXXXXXXXXXXLPMKLLVLRSCNLL----NGIGDIEL 150
LA + L L +FN+ +D P+K L + N L N I DI
Sbjct: 103 LANLTNLTGLTLFNNQITDID--------------PLK--NLTNLNRLELSSNTISDISA 146
Query: 151 LKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLI----- 205
L LT L+ +S Q K L +T L+ L++S ++ + L+KL NL LI
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 206
Query: 206 LRDCSSLQKLPRINELV--RLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLP 263
+ D + L L ++EL ++ D+ SLT +L +DL+ QI L
Sbjct: 207 ISDITPLGILTNLDELSLNGNQLKDIGTLASLT-----------NLTDLDLANNQISNLA 255
Query: 264 KFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVS-LSELHLRDCPTLKRLPHI 322
L +L+ + + G + N PL ++ L+ L L + L+ + I
Sbjct: 256 PLSGLTKLTELKL-GANQISNI------------SPLAGLTALTNLELNENQ-LEDISPI 301
Query: 323 AGLKNLEVLDVSGTSDSKFAISDES-FHDLDYLRELNLSNTKLKSLPPLSNLHRLRKL 379
+ LKNL L + + ISD S L L+ L SN K+ + L+NL + L
Sbjct: 302 SNLKNLTYLTLYFNN-----ISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWL 354
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 108/244 (44%), Gaps = 51/244 (20%)
Query: 143 NGIGDIELLKKLTVLE--ISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFN 200
N + DI +L KLT LE I+ N + I L +T L L+L+G Q+K + +L+ L N
Sbjct: 186 NKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTN 243
Query: 201 LRFLILRD--CSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQ 258
L L L + S+L L + +L L++ GA ++ L+ L ++L+ Q
Sbjct: 244 LTDLDLANNQISNLAPLSGLTKLTELKL----GANQISNISP--LAGLTALTNLELNENQ 297
Query: 259 IKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKR 318
++ + LK L+ +++ F+N +I P S TK + LF
Sbjct: 298 LEDISPISNLKNLTYLTL----YFNNISDISPVSSLTKLQRLF----------------- 336
Query: 319 LPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRK 378
N +V DVS S +L + L+ + ++ L PL+NL R+ +
Sbjct: 337 ------FANNKVSDVS------------SLANLTNINWLSAGHNQISDLTPLANLTRITQ 378
Query: 379 LFLK 382
L L
Sbjct: 379 LGLN 382
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 108/244 (44%), Gaps = 51/244 (20%)
Query: 143 NGIGDIELLKKLTVLE--ISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFN 200
N + DI +L KLT LE I+ N + I L +T L L+L+G Q+K + +L+ L N
Sbjct: 187 NKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTN 244
Query: 201 LRFLILRD--CSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQ 258
L L L + S+L L + +L L++ GA ++ L+ L ++L+ Q
Sbjct: 245 LTDLDLANNQISNLAPLSGLTKLTELKL----GANQISNISP--LAGLTALTNLELNENQ 298
Query: 259 IKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKR 318
++ + LK L+ +++ F+N +I P S TK + LF
Sbjct: 299 LEDISPISNLKNLTYLTL----YFNNISDISPVSSLTKLQRLF----------------- 337
Query: 319 LPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRK 378
N +V DVS S +L + L+ + ++ L PL+NL R+ +
Sbjct: 338 ------FYNNKVSDVS------------SLANLTNINWLSAGHNQISDLTPLANLTRITQ 379
Query: 379 LFLK 382
L L
Sbjct: 380 LGLN 383
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 108/244 (44%), Gaps = 51/244 (20%)
Query: 143 NGIGDIELLKKLTVLE--ISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFN 200
N + DI +L KLT LE I+ N + I L +T L L+L+G Q+K + +L+ L N
Sbjct: 182 NKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTN 239
Query: 201 LRFLILRD--CSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQ 258
L L L + S+L L + +L L++ GA ++ L+ L ++L+ Q
Sbjct: 240 LTDLDLANNQISNLAPLSGLTKLTELKL----GANQISNISP--LAGLTALTNLELNENQ 293
Query: 259 IKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKR 318
++ + LK L+ +++ F+N +I P S TK + LF
Sbjct: 294 LEDISPISNLKNLTYLTL----YFNNISDISPVSSLTKLQRLF----------------- 332
Query: 319 LPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRK 378
N +V DVS S +L + L+ + ++ L PL+NL R+ +
Sbjct: 333 ------FYNNKVSDVS------------SLANLTNINWLSAGHNQISDLTPLANLTRITQ 374
Query: 379 LFLK 382
L L
Sbjct: 375 LGLN 378
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 108/244 (44%), Gaps = 51/244 (20%)
Query: 143 NGIGDIELLKKLTVLE--ISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFN 200
N + DI +L KLT LE I+ N + I L +T L L+L+G Q+K + +L+ L N
Sbjct: 183 NKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTN 240
Query: 201 LRFLILRD--CSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQ 258
L L L + S+L L + +L L++ GA ++ L+ L ++L+ Q
Sbjct: 241 LTDLDLANNQISNLAPLSGLTKLTELKL----GANQISNISP--LAGLTALTNLELNENQ 294
Query: 259 IKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKR 318
++ + LK L+ +++ F+N +I P S TK + LF
Sbjct: 295 LEDISPISNLKNLTYLTL----YFNNISDISPVSSLTKLQRLF----------------- 333
Query: 319 LPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRK 378
N +V DVS S +L + L+ + ++ L PL+NL R+ +
Sbjct: 334 ------FYNNKVSDVS------------SLANLTNINWLSAGHNQISDLTPLANLTRITQ 375
Query: 379 LFLK 382
L L
Sbjct: 376 LGLN 379
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 108/244 (44%), Gaps = 51/244 (20%)
Query: 143 NGIGDIELLKKLTVLE--ISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFN 200
N + DI +L KLT LE I+ N + I L +T L L+L+G Q+K + +L+ L N
Sbjct: 183 NKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTN 240
Query: 201 LRFLILRD--CSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQ 258
L L L + S+L L + +L L++ GA ++ L+ L ++L+ Q
Sbjct: 241 LTDLDLANNQISNLAPLSGLTKLTELKL----GANQISNISP--LAGLTALTNLELNENQ 294
Query: 259 IKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKR 318
++ + LK L+ +++ F+N +I P S TK + LF
Sbjct: 295 LEDISPISNLKNLTYLTL----YFNNISDISPVSSLTKLQRLF----------------- 333
Query: 319 LPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRK 378
N +V DVS S +L + L+ + ++ L PL+NL R+ +
Sbjct: 334 ------FYNNKVSDVS------------SLANLTNINWLSAGHNQISDLTPLANLTRITQ 375
Query: 379 LFLK 382
L L
Sbjct: 376 LGLN 379
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 25/184 (13%)
Query: 231 GATSLT-FFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIK 289
G T++T + DL + LQ R IK + YL L++I+ + +I
Sbjct: 27 GKTNVTDTVSQTDLDQVTTLQA---DRLGIKSIDGVEYLNNLTQINFSNNQ----LTDIT 79
Query: 290 PRDSNTKSKPLFPVSLSELHLRDCPTLKRLPHIAGLK--NLEVLDV----SGTSDSKFAI 343
P + TK L + ++ + D L L ++ GL N ++ D+ + T+ ++ +
Sbjct: 80 PLKNLTK---LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 136
Query: 344 SDESFHD------LDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCEL--LEELPKMNG 395
S + D L L++LN S+ ++ L PL+NL L +L + + ++ + L K+
Sbjct: 137 SSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 196
Query: 396 LENL 399
LE+L
Sbjct: 197 LESL 200
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 162 ANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-- 217
NS++ +P+ + DE+T L L L G +++ LP+ +KL +L +L L + LQ LP
Sbjct: 37 TNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST-NQLQSLPNGV 95
Query: 218 INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRI 274
++L +L+ + L+ L P+ K L+ + L + Q+K +P G RL+ +
Sbjct: 96 FDKLTQLKELALN-TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSL 150
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 140 NLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSK 197
+L NG+ D L LT L + G N +Q +P+ + +++T L LNLS Q++ LP+ K
Sbjct: 42 SLPNGVFDE--LTSLTQLYL-GGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK 98
Query: 198 LFNLRFLILRDCSSLQKLP 216
L L+ L L + + LQ LP
Sbjct: 99 LTQLKELAL-NTNQLQSLP 116
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 85/212 (40%), Gaps = 49/212 (23%)
Query: 208 DCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGY 267
+ + LP +N L E+ D LT P Q L+ + L I+ +P + +
Sbjct: 75 EVGAFNGLPSLNTL---ELFD----NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAF 127
Query: 268 --LKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLPHIAGL 325
+ L R+ + KR E V+L L+L C LK +P++ L
Sbjct: 128 NRVPSLRRLDLGELKRLEYISEAAFEGL---------VNLRYLNLGMC-NLKDIPNLTAL 177
Query: 326 KNLEVLDVSG--------------TSDSKF--------AISDESFHDLDYLRELNLSNTK 363
LE L++SG TS K I +F DL L ELNLS+
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNN 237
Query: 364 LKSLPP--LSNLHRLRKLFLK------NCELL 387
L SLP + LHRL ++ L NC++L
Sbjct: 238 LMSLPHDLFTPLHRLERVHLNHNPWHCNCDVL 269
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 148 IELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSK-----LFNLR 202
E L KL L + N ++ IP + + L+ L+L ++K L +S+ L NLR
Sbjct: 103 FEYLSKLRELWLRN-NPIESIPSYAFNRVPSLRRLDLG--ELKRLEYISEAAFEGLVNLR 159
Query: 203 FLILRDCSSLQKLPRINELVRLEIIDLSG 231
+L L C+ L+ +P + LVRLE ++LSG
Sbjct: 160 YLNLGMCN-LKDIPNLTALVRLEELELSG 187
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 10/137 (7%)
Query: 142 LNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLF 199
+ + I+ L + L + G N + I L E+T L L L+G Q++ LP+ KL
Sbjct: 53 IKSVQGIQYLPNVRYLAL-GGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLT 109
Query: 200 NLRFLILRDCSSLQKLPR--INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRT 257
NL+ L+L + + LQ LP ++L L ++L+ L P+ K +L +DLS
Sbjct: 110 NLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLA-HNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 258 QIKRLPKFGYLKRLSRI 274
Q++ LP+ G +L+++
Sbjct: 168 QLQSLPE-GVFDKLTQL 183
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 28/135 (20%)
Query: 141 LLNGIGD-IELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLF 199
L NG+ D + LK+L ++E N +Q +PD + D++T L LNL+ Q++ LP
Sbjct: 100 LPNGVFDKLTNLKELVLVE----NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK----- 150
Query: 200 NLRFLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQI 259
KL + EL DLS L PE K L+ + L + Q+
Sbjct: 151 ----------GVFDKLTNLTEL------DLS-YNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Query: 260 KRLPKFGYLKRLSRI 274
K +P G RL+ +
Sbjct: 194 KSVPD-GVFDRLTSL 207
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 146 GDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRF 203
G + L LT L++S N +Q +P+ + D++T+L+ L L Q+K +P +L +L++
Sbjct: 151 GVFDKLTNLTELDLS-YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 209
Query: 204 LILRD 208
+ L D
Sbjct: 210 IWLHD 214
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 104/245 (42%), Gaps = 49/245 (20%)
Query: 146 GDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLI 205
GD + LK L L I N + KI + KL+ L LS Q+K LP
Sbjct: 70 GDFKNLKNLHTL-ILINNKISKISPGAFAPLVKLERLYLSKNQLKELP------------ 116
Query: 206 LRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLP-- 263
+K+P+ + +R+ +++ F + + +++L +K
Sbjct: 117 -------EKMPKTLQELRVHENEITKVRKSVF------NGLNQMIVVELGTNPLKSSGIE 163
Query: 264 --KFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPL-FPVSLSELHLRDCPTLK-RL 319
F +K+LS I I D+N + P P SL+ELHL K
Sbjct: 164 NGAFQGMKKLSYIRIA--------------DTNITTIPQGLPPSLTELHLDGNKITKVDA 209
Query: 320 PHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLP-PLSNLHRLRK 378
+ GL NL L +S S S A+ + S + +LREL+L+N KL +P L++ ++
Sbjct: 210 ASLKGLNNLAKLGLSFNSIS--AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 267
Query: 379 LFLKN 383
++L N
Sbjct: 268 VYLHN 272
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 104/245 (42%), Gaps = 49/245 (20%)
Query: 146 GDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLI 205
GD + LK L L I N + KI + KL+ L LS Q+K LP
Sbjct: 70 GDFKNLKNLHTL-ILINNKISKISPGAFAPLVKLERLYLSKNQLKELP------------ 116
Query: 206 LRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLP-- 263
+K+P+ + +R+ +++ F + + +++L +K
Sbjct: 117 -------EKMPKTLQELRVHENEITKVRKSVF------NGLNQMIVVELGTNPLKSSGIE 163
Query: 264 --KFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPL-FPVSLSELHLRDCPTLK-RL 319
F +K+LS I I D+N + P P SL+ELHL K
Sbjct: 164 NGAFQGMKKLSYIRIA--------------DTNITTIPQGLPPSLTELHLDGNKITKVDA 209
Query: 320 PHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLP-PLSNLHRLRK 378
+ GL NL L +S S S A+ + S + +LREL+L+N KL +P L++ ++
Sbjct: 210 ASLKGLNNLAKLGLSFNSIS--AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 267
Query: 379 LFLKN 383
++L N
Sbjct: 268 VYLHN 272
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 85/212 (40%), Gaps = 49/212 (23%)
Query: 208 DCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGY 267
+ + LP +N L E+ D LT P Q L+ + L I+ +P + +
Sbjct: 75 EVGAFNGLPSLNTL---ELFD----NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAF 127
Query: 268 --LKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLPHIAGL 325
+ L R+ + KR E V+L L+L C LK +P++ L
Sbjct: 128 NRVPSLRRLDLGELKRLEYISEAAFEGL---------VNLRYLNLGMC-NLKDIPNLTAL 177
Query: 326 KNLEVLDVSG--------------TSDSKF--------AISDESFHDLDYLRELNLSNTK 363
LE L++SG TS K I +F DL L ELNLS+
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNN 237
Query: 364 LKSLPP--LSNLHRLRKLFLK------NCELL 387
L SLP + LHRL ++ L NC++L
Sbjct: 238 LMSLPHDLFTPLHRLERVHLNHNPWHCNCDVL 269
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 148 IELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSK-----LFNLR 202
E L KL L + N ++ IP + + L+ L+L ++K L +S+ L NLR
Sbjct: 103 FEYLSKLRELWLRN-NPIESIPSYAFNRVPSLRRLDLG--ELKRLEYISEAAFEGLVNLR 159
Query: 203 FLILRDCSSLQKLPRINELVRLEIIDLSG 231
+L L C+ L+ +P + LVRLE ++LSG
Sbjct: 160 YLNLGMCN-LKDIPNLTALVRLEELELSG 187
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 92/225 (40%), Gaps = 47/225 (20%)
Query: 151 LKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRD 208
L L VL++ G NS+++I + + L +L L + +PS L LR L LR+
Sbjct: 98 LHHLEVLQL-GRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156
Query: 209 CSSLQKLP-----RINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLP 263
+ ++ +P R+ L+RL DL L + E +L+ ++L IK +P
Sbjct: 157 -NPIESIPSYAFNRVPSLMRL---DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212
Query: 264 KFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLPHIA 323
L L + + G ++F EI+P
Sbjct: 213 NLTPLVGLEELEMSG----NHFPEIRPGS-----------------------------FH 239
Query: 324 GLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLP 368
GL +L+ L V + S I +F L L ELNL++ L SLP
Sbjct: 240 GLSSLKKLWVMNSQVS--LIERNAFDGLASLVELNLAHNNLSSLP 282
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
Query: 148 IELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLI 205
I+ L + L + G N + I L E+T L L L+G Q++ LP+ KL NL+ L+
Sbjct: 59 IQYLPNVRYLAL-GGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115
Query: 206 LRDCSSLQKLPR--INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLP 263
L + + LQ LP ++L L + L L P+ K +L +DL Q++ LP
Sbjct: 116 LVE-NQLQSLPDGVFDKLTNLTYLYLY-HNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLP 173
Query: 264 K--FGYLKRLSRISI 276
+ F L +L ++S+
Sbjct: 174 EGVFDKLTQLKQLSL 188
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 143 NGIGD-IELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLF 199
NG+ D + LK+L ++E N +Q +PD + D++T L L L Q++ LP KL
Sbjct: 102 NGVFDKLTNLKELVLVE----NQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLT 157
Query: 200 NLRFLILRDCSSLQKLP 216
NL L L D + LQ LP
Sbjct: 158 NLTRLDL-DNNQLQSLP 173
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 146 GDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLP 193
G + L LT L++ N +Q +P+ + D++T+L+ L+L+ Q+K +P
Sbjct: 151 GVFDKLTNLTRLDLDN-NQLQSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 31/153 (20%)
Query: 275 SIEGCKRFHNFHEIKPRDSN-TKSKPLFPVS-LSELHLRDCPTLKRLPHIAGLKNLEVLD 332
+IEG + +N ++ +D+ T PL ++ ++EL L P LK + IAGL++++ LD
Sbjct: 61 TIEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNP-LKNVSAIAGLQSIKTLD 119
Query: 333 VSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPK 392
L++T++ + PL+ L L+ L+L + + +
Sbjct: 120 --------------------------LTSTQITDVTPLAGLSNLQVLYL-DLNQITNISP 152
Query: 393 MNGLENLEVLDLSGCSKLVEFPKLKDFPKLELL 425
+ GL NL+ L + G +++ + L + KL L
Sbjct: 153 LAGLTNLQYLSI-GNNQVNDLTPLANLSKLTTL 184
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 30/134 (22%)
Query: 161 GANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPRI 218
G+N + +P + D +T+L L+L Q+ LPS +L +L+ L + C+ L +LPR
Sbjct: 72 GSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNKLTELPR- 129
Query: 219 NELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEG 278
G LT HL + L + Q+K +P G RLS S+
Sbjct: 130 ------------GIERLT-----------HLTHLALDQNQLKSIPH-GAFDRLS--SLTH 163
Query: 279 CKRFHNFHEIKPRD 292
F N + + RD
Sbjct: 164 AYLFGNPWDCECRD 177
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 161 GANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLP--SLSKLFNLRFLILRDCSSLQKLPR- 217
G N ++ +P + D +TKL+ L L+ Q++ +P + KL NL+ L L + LQ +P
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHG 173
Query: 218 -INELVRLEIIDLSG 231
+ L +L+ I L G
Sbjct: 174 AFDRLGKLQTITLFG 188
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 38/135 (28%)
Query: 163 NSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS-----LSKLFNLRFLILRDCSSLQKLPR 217
N + +P + D +T+L L L G Q+K LPS L+KL LR + + LQ +P
Sbjct: 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL----NTNQLQSIP- 147
Query: 218 INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLP--KFGYLKRLSRIS 275
+GA K +LQ + LS Q++ +P F L +L I+
Sbjct: 148 ------------AGA----------FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185
Query: 276 IEG----CKRFHNFH 286
+ G C R +
Sbjct: 186 LFGNQFDCSRCETLY 200
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 161 GANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLP--SLSKLFNLRFLILRDCSSLQKLPR- 217
G N ++ +P + D +TKL+ L L+ Q++ +P + KL NL+ L L + LQ +P
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHG 173
Query: 218 -INELVRLEIIDLSG 231
+ L +L+ I L G
Sbjct: 174 AFDRLGKLQTITLFG 188
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 19/117 (16%)
Query: 163 NSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS-----LSKLFNLRFLILRDCSSLQKLP- 216
N + +P + D +T+L L L G Q+K LPS L+KL LR + + LQ +P
Sbjct: 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL----NTNQLQSIPA 148
Query: 217 -RINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMI-------DLSRTQIKRLPKF 265
++L L+ + LS L P + LQ I D SR +I L ++
Sbjct: 149 GAFDKLTNLQTLSLS-TNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQW 204
>pdb|1U8V|A Chain A, Crystal Structure Of 4-Hydroxybutyryl-Coa Dehydratase From
Clostridium Aminobutyricum: Radical Catalysis Involving
A [4fe-4s] Cluster And Flavin
pdb|1U8V|B Chain B, Crystal Structure Of 4-Hydroxybutyryl-Coa Dehydratase From
Clostridium Aminobutyricum: Radical Catalysis Involving
A [4fe-4s] Cluster And Flavin
pdb|1U8V|C Chain C, Crystal Structure Of 4-Hydroxybutyryl-Coa Dehydratase From
Clostridium Aminobutyricum: Radical Catalysis Involving
A [4fe-4s] Cluster And Flavin
pdb|1U8V|D Chain D, Crystal Structure Of 4-Hydroxybutyryl-Coa Dehydratase From
Clostridium Aminobutyricum: Radical Catalysis Involving
A [4fe-4s] Cluster And Flavin
Length = 490
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 144 GIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKL-QSLNLSG--CQMKFLPSLSKLFN 200
G+GD+ + + +GA + DKL+ EMT L ++L G C + P+ + +
Sbjct: 302 GVGDVVIGAAALAADYNGAQKASHVKDKLI-EMTHLNETLYCCGIACSAEGYPTAAGNYQ 360
Query: 201 LRFLILRDC-SSLQKLPRINELVRLEIIDLSGATSLTFFPEQDL 243
+ L+ C ++ + P E+VRL D++G +T E D
Sbjct: 361 IDLLLANVCKQNITRFPY--EIVRLA-EDIAGGLMVTMPSEADF 401
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 19/192 (9%)
Query: 228 DLSGATSLTFFPE-----QDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEG---- 278
DL G T+L+ F + + +L ++L QI L L +++ + + G
Sbjct: 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK 98
Query: 279 -CKRFHNFHEIKPRD-SNTKSKPLFPVS-LSELHLR--DCPTLKRLPHIAGLKNLEVLDV 333
IK D ++T+ + P++ LS L + D + + +AGL NL+ L +
Sbjct: 99 NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 158
Query: 334 SGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPKM 393
S +L L L + K+ + PL++L L ++ LKN ++ + P
Sbjct: 159 GNAQVSDLT----PLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLA 214
Query: 394 NGLENLEVLDLS 405
N NL ++ L+
Sbjct: 215 N-TSNLFIVTLT 225
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 149/352 (42%), Gaps = 75/352 (21%)
Query: 99 KQLHALAIFNSGFKSLDLXXXXXXXXXXXXLPMKL-LVLRSCNLLNGIGDIELLKKLTVL 157
+Q H L + N G SL LP L ++ SCN L + ++ K ++
Sbjct: 71 RQAHELELNNLGLSSL------------PELPPHLESLVASCNSLTELPELPQSLKSLLV 118
Query: 158 EISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPR 217
+ + ++ +P L+ L +S Q++ LP L L+ +I D +SL+KLP
Sbjct: 119 DNNNLKALSDLP-------PLLEYLGVSNNQLEKLPELQNSSFLK-IIDVDNNSLKKLPD 170
Query: 218 INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIE 277
+ LE I +G L PE L L I +K+LP +S+E
Sbjct: 171 LPP--SLEFI-AAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDLP-------LSLE 218
Query: 278 GCKRFHNFHEIKPR------------DSNT-KSKPLFPVSLSELHLRDCPTLKRLPHIAG 324
+N E P D+N K+ P P SL L++RD L LP +
Sbjct: 219 SIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN-YLTDLPELP- 276
Query: 325 LKNLEVLDVSGTSDSKF-----------AISDE--SFHDLD-YLRELNLSNTKLKSLPPL 370
++L LDVS S A S+E S DL L ELN+SN KL LP L
Sbjct: 277 -QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL 335
Query: 371 SNLHRLRKLFLKNCELLEELPKMNGLENLEVLDLSGCSKLVEFPKLKDFPKL 422
RL +L + + L E+P++ +NL+ L VE+ L++FP +
Sbjct: 336 P--PRLERL-IASFNHLAEVPELP--QNLKQLH-------VEYNPLREFPDI 375
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 35/162 (21%)
Query: 77 STLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLXXXXXXXXXXXXLPMKLLV- 135
+TL+ + D L + + L R LH L F + L +P LL
Sbjct: 101 TTLIFESDNLGMNITRQHLDR---LHGLKRFRFTTRRL------------THIPANLLTD 145
Query: 136 LRSCNLLNGIGDIEL--------LKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGC 187
+R+ + L +IE L+ L +E G+N ++++P + +M KL+ LNL+
Sbjct: 146 MRNLSHLELRANIEEMPSHLFDDLENLESIEF-GSNKLRQMPRGIFGKMPKLKQLNLASN 204
Query: 188 QMKFLPS--LSKLFNLRFLILR----DCSSLQKLPRINELVR 223
Q+K +P +L +L+ + L DCS PRI+ L R
Sbjct: 205 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC----PRIDYLSR 242
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 343 ISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLKNCELLEELPK--MNGLEN 398
I+ + L L+ + +L +P L+++ L L L+ +EE+P + LEN
Sbjct: 114 ITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELR--ANIEEMPSHLFDDLEN 171
Query: 399 LEVLDLSGCSKLVEFPK--LKDFPKLELLDISNTGIKVVPSDI 439
LE ++ G +KL + P+ PKL+ L++++ +K VP I
Sbjct: 172 LESIEF-GSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGI 213
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 285 FHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLPHIA-GLKNLEVLDVSGTSDSKFAI 343
FH IK D NT + L S+ L L + LK+L+VL+++ +K I
Sbjct: 249 FHNIKDPDQNTFAG-LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK--I 305
Query: 344 SDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRKL----FLKNCELLEELPKMNGLENL 399
+DE+F+ LD L+ LNLS L L SN + L K+ KN + + LE L
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLGELYS-SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364
Query: 400 EVLDL 404
+ LDL
Sbjct: 365 QTLDL 369
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 146 GDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRF 203
G + L +LT L +S N +Q +PD + D++TKL L L +++ LP+ KL L+
Sbjct: 46 GVFDKLTQLTKLSLS-QNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE 104
Query: 204 LILRDCSSLQKLP 216
L L D + L+ +P
Sbjct: 105 LAL-DTNQLKSVP 116
>pdb|3SB4|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
pdb|3SB4|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
Length = 329
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 402 LDLSGCSKLVEFPKLKD-FPKLELLDISNTGIKVVP--------SDISVTSSNFTPDEKH 452
L L+G +F L+D FP L++LDISN IK + +NF P
Sbjct: 30 LTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKXYSGKAGTYPNGKFYIYXANFVP---- 85
Query: 453 RQASGVFNLVGSLAKGKKPL 472
A N+V + KGK+ L
Sbjct: 86 --AYAFSNVVNGVTKGKQTL 103
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 337 SDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRKLFL 381
+++ I+ E+F +L L+ L +SNT +K LP + +H L+K+ L
Sbjct: 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 30/162 (18%)
Query: 151 LKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLIL--RD 208
L KL + I AN++ I + + LQ L +S +K LP + K+ +L+ ++L +D
Sbjct: 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137
Query: 209 CSSLQKLPR-------------------INEL-------VRLEIIDLSGATSLTFFPEQD 242
++ + R I E+ +L+ ++LS +L P
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDV 197
Query: 243 LSKHQHLQMIDLSRTQIKRLPKFGY--LKRLSRISIEGCKRF 282
++D+SRT+I LP +G LK+L S K+
Sbjct: 198 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL 239
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 153 KLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSL 212
+L L +S N+++++P+ + + L++S ++ LPS L NL+ L R +L
Sbjct: 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG-LENLKKLRARSTYNL 236
Query: 213 QKLPRINELVRL 224
+KLP + +LV L
Sbjct: 237 KKLPTLEKLVAL 248
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 35/161 (21%)
Query: 329 EVLDVSGTSDSKFAI-SDES-FHDLDYLR--ELNLSNTKLKSLPPLSNLHRLRKLFLKNC 384
E+L VSG + + SDES + LD R ++LSN+ ++ +S LH + L C
Sbjct: 28 ELLKVSGVCKRWYRLASDESLWQTLDEFRVQHMDLSNSVIE----VSTLHGI----LSQC 79
Query: 385 ELLEEL---------PKMNGL---ENLEVLDLSGCSKLVEFP---------KLKDFPKLE 423
L+ L P +N L NL L+LSGCS EF +L +
Sbjct: 80 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 139
Query: 424 LLDISNTGIKVVPSDIS--VTSSNFTPDEKHRQASGVFNLV 462
D + ++V + +S +T N + K+ Q S + LV
Sbjct: 140 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 180
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 337 SDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRKLFL 381
+++ I+ E+F +L L+ L +SNT +K LP + +H L+K+ L
Sbjct: 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 30/162 (18%)
Query: 151 LKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLIL--RD 208
L KL + I AN++ I + + LQ L +S +K LP + K+ +L+ ++L +D
Sbjct: 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137
Query: 209 CSSLQKLPR-------------------INEL-------VRLEIIDLSGATSLTFFPEQD 242
++ + R I E+ +L+ ++LS +L P
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197
Query: 243 LSKHQHLQMIDLSRTQIKRLPKFGY--LKRLSRISIEGCKRF 282
++D+SRT+I LP +G LK+L S K+
Sbjct: 198 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL 239
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 153 KLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSL 212
+L L +S N+++++P+ + + L++S ++ LPS L NL+ L R +L
Sbjct: 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG-LENLKKLRARSTYNL 236
Query: 213 QKLPRINELVRL 224
+KLP + +LV L
Sbjct: 237 KKLPTLEKLVAL 248
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 324 GLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP-LSNLHRLRKLFLK 382
GL + V ++ F IS +FH L+EL+L+ T L LP L L L+KL L
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLS 309
Query: 383 NCELLEELPKMNG--LENLEVLDLSGCSKLVEFPK--LKDFPKLELLDISNTGIKV 434
E L +++ +L L + G +K +E L++ L LD+S+ I+
Sbjct: 310 -ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 29/137 (21%)
Query: 145 IGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLR 202
IG + L L L + N ++ +P ++ D +TKL L+L +++ LP KL +L+
Sbjct: 102 IGVFDQLVNLAELRLD-RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160
Query: 203 FLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRL 262
L L + N+L R+ PE K L+ + L Q+KR+
Sbjct: 161 ELRLYN----------NQLKRV--------------PEGAFDKLTELKTLKLDNNQLKRV 196
Query: 263 PK--FGYLKRLSRISIE 277
P+ F L++L + ++
Sbjct: 197 PEGAFDSLEKLKMLQLQ 213
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 162 ANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLP--R 217
+N + +P K +TKL+ L L+ +++ LP+ +L NL L + D + LQ LP
Sbjct: 46 SNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD-NKLQALPIGV 104
Query: 218 INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIE 277
++LV L + L L P + L + L +++ LPK G +L+ S++
Sbjct: 105 FDQLVNLAELRLD-RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLT--SLK 160
Query: 278 GCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCP 314
+ ++N + P + K L + L L+ P
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 12/119 (10%)
Query: 325 LKNLEVLDVSGTSDSKF-AISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFL 381
LKNLE L V+ D+K A+ F L L EL L +LKSLPP +L +L L L
Sbjct: 84 LKNLETLWVT---DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Query: 382 KNCELLEELPK--MNGLENLEVLDLSGCSKLVEFPK--LKDFPKLELLDISNTGIKVVP 436
E L+ LPK + L +L+ L L ++L P+ +L+ L + N +K VP
Sbjct: 141 GYNE-LQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 94/232 (40%), Gaps = 27/232 (11%)
Query: 247 QHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLS 306
QHL++++ Q L K LKRL+ S +G F + + S +S +
Sbjct: 307 QHLELVNCKFGQFPTL-KLKSLKRLTFTSNKGGNAF--------SEVDLPSLEFLDLSRN 357
Query: 307 ELHLRDCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKS 366
L + C + G +L+ LD+S +F L+ L L+ ++ LK
Sbjct: 358 GLSFKGCCSQSDF----GTTSLKYLDLSFNG---VITMSSNFLGLEQLEHLDFQHSNLKQ 410
Query: 367 LPPLSNLHRLRKLFLKNCELLEELPKMNGLEN----LEVLDLSGCSKLVEF-PKL-KDFP 420
+ S LR L + NG+ N LEVL ++G S F P + +
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470
Query: 421 KLELLDISNTGI-KVVPSDISVTSS----NFTPDEKHRQASGVFNLVGSLAK 467
L LD+S + ++ P+ + SS N ++ G+F+ + SL K
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 351 LDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDL 404
L L L+L + +++ + PL+ L +L+ L+L + +L + GL+NL+VL+L
Sbjct: 153 LTKLDTLSLEDNQIRRIVPLARLTKLQNLYLSKNH-ISDLRALRGLKNLDVLEL 205
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 325 LKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFL 381
L LEVLD+S + A+ D+SF L L+EL L +LKS+P L L+K++L
Sbjct: 346 LDKLEVLDLS--YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWL 402
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 354 LRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDL 404
L L+L + ++ + PL+ L +L+ L+L + +L + GL+NL+VL+L
Sbjct: 155 LDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLEL 204
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 28/104 (26%)
Query: 354 LRELNLSNTKLKSLPPLSNLHRLR---------------------KLFLKNCELLEELPK 392
L+EL+LS+ ++ L PL +L +L +LFL N E L +
Sbjct: 65 LKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNE-LRDTDS 123
Query: 393 MNGLENLEVLDLSGCSKLVEFPKLKDFPKLELLD-----ISNTG 431
+ L+NLE+L + +KL L KLE+LD I+NTG
Sbjct: 124 LIHLKNLEILSIRN-NKLKSIVMLGFLSKLEVLDLHGNEITNTG 166
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 354 LRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDL 404
L L+L + ++ + PL+ L +L+ L+L + +L + GL+NL+VL+L
Sbjct: 158 LDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLEL 207
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 13/104 (12%)
Query: 343 ISDESFHDLDYLRELNLSNTKLKSLPPL--SNLHRLRKLFLKNCELLEELPKMNGLEN-- 398
IS E+F + LR L+LS+ L +L S+L L L L N ++ + N E+
Sbjct: 79 ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV--VVDRNAFEDMA 136
Query: 399 -LEVLDLSGCSKLVEFPK--LKD---FPKLELLDISNTGIKVVP 436
L+ L LS +++ FP +KD PKL LLD+S+ +K +P
Sbjct: 137 QLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 351 LDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDL 404
L L L+L + ++ + PL+ L +L+ L+L + +L + GL+NL+VL+L
Sbjct: 155 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLEL 207
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 351 LDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDL 404
L L L+L + ++ + PL+ L +L+ L+L + +L + GL+NL+VL+L
Sbjct: 153 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLEL 205
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 351 LDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDL 404
L L L+L + ++ + PL+ L +L+ L+L + +L + GL+NL+VL+L
Sbjct: 173 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLEL 225
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 351 LDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDL 404
L L L+L + ++ + PL+ L +L+ L+L + +L + GL+NL+VL+L
Sbjct: 173 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 351 LDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDL 404
L L L+L + ++ + PL+ L +L+ L+L + +L + GL+NL+VL+L
Sbjct: 173 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLEL 225
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 351 LDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDL 404
L L L+L + ++ + PL+ L +L+ L+L + +L + GL+NL+VL+L
Sbjct: 175 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLEL 227
>pdb|3G04|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Thyroid- Stimulating Autoantibody
pdb|2XWT|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Blocking Type Tshr Autoantibody
Length = 239
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 355 RELNLSNTKLKSLP--PLSNLHRLRKLFLKNCELLEELP-----KMNGLENLEVLDLSGC 407
+ L L T L+++P SNL + ++++ L++L ++ + ++E+ +
Sbjct: 34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93
Query: 408 SKLVEFPKLKDFPKLELLDISNTGIKVVPSDISVTSSN 445
+ ++ LK+ P L+ L I NTG+K+ P V S++
Sbjct: 94 T-YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD 130
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 102/264 (38%), Gaps = 61/264 (23%)
Query: 131 MKLLVLRSCNL-LNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQM 189
++ L LRS L L +G L LT L+IS N + + D + ++ L+SL + +
Sbjct: 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS-ENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 190 KFLP--SLSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQ 247
++ + S L +L L L C+ LT P + LS
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCN------------------------LTSIPTEALSHLH 176
Query: 248 HLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSE 307
L ++ L I + + + KRL R+ + + + P L+ ++L+
Sbjct: 177 GLIVLRLRHLNINAIRDYSF-KRLYRLKVLEISHWPYLDTMTP-------NCLYGLNLTS 228
Query: 308 LHLRDCPTLKRLPHIA--GLKNLEVLDVSGTSDSKF----------------------AI 343
L + C L +P++A L L L++S S +
Sbjct: 229 LSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV 287
Query: 344 SDESFHDLDYLRELNLSNTKLKSL 367
+F L+YLR LN+S +L +L
Sbjct: 288 EPYAFRGLNYLRVLNVSGNQLTTL 311
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 44/169 (26%)
Query: 245 KH-QHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKP---- 299
KH +HL+++ LSR I+ I I N + ++ D+ + P
Sbjct: 85 KHLRHLEILQLSRNHIRT------------IEIGAFNGLANLNTLELFDNRLTTIPNGAF 132
Query: 300 LFPVSLSELHLRDCPTLKRLPHIA--GLKNLEVLDVSGTSDSKFAISDESFHDLDYLREL 357
++ L EL LR+ P ++ +P A + +L LD+ + IS+ +F L LR L
Sbjct: 133 VYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSY-ISEGAFEGLSNLRYL 190
Query: 358 NLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDLSG 406
NL+ L+ E+P + L L+ LDLSG
Sbjct: 191 NLAMCNLR-----------------------EIPNLTPLIKLDELDLSG 216
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 351 LDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDL 404
L L L+L + ++ + PL+ L +L+ L+L + +L + GL+NL+VL+L
Sbjct: 150 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLEL 202
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 145 IGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLR 202
+G + L +L L + G N ++ +P LL KL+ L+L+ Q+ LP+ L+ L NL
Sbjct: 117 LGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 203 FLILRDCSSLQKLPR 217
L+L++ +SL +P+
Sbjct: 176 TLLLQE-NSLYTIPK 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,737,024
Number of Sequences: 62578
Number of extensions: 917889
Number of successful extensions: 2817
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 2584
Number of HSP's gapped (non-prelim): 211
length of query: 821
length of database: 14,973,337
effective HSP length: 107
effective length of query: 714
effective length of database: 8,277,491
effective search space: 5910128574
effective search space used: 5910128574
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)