Query 003420
Match_columns 821
No_of_seqs 319 out of 5300
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 23:05:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.4E-38 1.2E-42 383.5 32.7 367 74-473 69-447 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.9E-36 1.3E-40 365.5 32.0 312 98-432 68-392 (968)
3 KOG4194 Membrane glycoprotein 99.9 2.7E-28 5.7E-33 251.2 5.3 336 74-433 78-429 (873)
4 KOG4194 Membrane glycoprotein 99.9 8.3E-27 1.8E-31 240.3 6.6 364 75-471 53-433 (873)
5 KOG0472 Leucine-rich repeat pr 99.9 1.9E-28 4.1E-33 241.6 -8.1 261 74-386 45-309 (565)
6 KOG0618 Serine/threonine phosp 99.9 6.4E-27 1.4E-31 254.1 -2.3 409 75-550 22-438 (1081)
7 KOG0444 Cytoskeletal regulator 99.9 2.7E-26 5.8E-31 237.8 -6.9 340 51-414 31-379 (1255)
8 KOG0444 Cytoskeletal regulator 99.9 5.9E-26 1.3E-30 235.3 -4.4 336 73-433 6-352 (1255)
9 PLN03210 Resistant to P. syrin 99.9 6.2E-22 1.3E-26 241.9 28.1 298 74-431 532-836 (1153)
10 KOG0472 Leucine-rich repeat pr 99.9 6.6E-27 1.4E-31 230.8 -13.7 166 325-548 361-534 (565)
11 PLN03210 Resistant to P. syrin 99.9 1.4E-21 3E-26 238.8 26.5 337 72-432 556-905 (1153)
12 KOG0618 Serine/threonine phosp 99.8 1.8E-22 3.8E-27 219.9 -3.0 408 74-532 45-489 (1081)
13 PRK15387 E3 ubiquitin-protein 99.6 6.3E-15 1.4E-19 167.1 18.3 257 99-433 201-458 (788)
14 PRK15387 E3 ubiquitin-protein 99.6 6.3E-15 1.4E-19 167.1 17.6 172 74-279 201-372 (788)
15 KOG4658 Apoptotic ATPase [Sign 99.6 1E-15 2.2E-20 177.4 7.5 130 51-188 522-653 (889)
16 KOG4237 Extracellular matrix p 99.6 1.6E-16 3.5E-21 157.8 -0.8 280 100-409 68-358 (498)
17 KOG4237 Extracellular matrix p 99.6 3.5E-16 7.6E-21 155.4 0.0 127 74-209 67-198 (498)
18 PRK15370 E3 ubiquitin-protein 99.5 6.3E-14 1.4E-18 160.2 15.2 140 100-263 179-320 (754)
19 PRK15370 E3 ubiquitin-protein 99.5 7.3E-14 1.6E-18 159.7 14.9 163 74-264 178-342 (754)
20 KOG0617 Ras suppressor protein 99.5 4.8E-16 1E-20 136.5 -4.5 151 72-233 31-184 (264)
21 KOG0617 Ras suppressor protein 99.5 8.1E-16 1.7E-20 135.1 -5.1 157 97-264 31-190 (264)
22 cd00116 LRR_RI Leucine-rich re 99.3 2.2E-13 4.8E-18 145.0 1.1 174 78-260 2-206 (319)
23 cd00116 LRR_RI Leucine-rich re 99.2 1.3E-12 2.9E-17 139.0 -0.0 149 103-260 2-178 (319)
24 KOG4658 Apoptotic ATPase [Sign 99.2 7.8E-12 1.7E-16 145.5 5.8 206 3-233 437-653 (889)
25 PF14580 LRR_9: Leucine-rich r 98.9 1.4E-09 3E-14 101.3 5.4 126 96-231 16-149 (175)
26 COG4886 Leucine-rich repeat (L 98.9 2.4E-09 5.2E-14 117.3 7.1 192 78-282 97-290 (394)
27 KOG3207 Beta-tubulin folding c 98.8 8.5E-10 1.8E-14 112.2 0.9 187 72-267 119-321 (505)
28 PF14580 LRR_9: Leucine-rich r 98.8 2.2E-09 4.7E-14 100.1 3.5 137 62-209 7-150 (175)
29 KOG3207 Beta-tubulin folding c 98.8 1E-09 2.2E-14 111.6 0.8 106 97-209 119-232 (505)
30 KOG0532 Leucine-rich repeat (L 98.8 3.4E-10 7.3E-15 118.6 -4.0 164 103-279 79-244 (722)
31 COG4886 Leucine-rich repeat (L 98.7 1.9E-08 4.1E-13 110.3 8.0 180 174-392 113-295 (394)
32 KOG0532 Leucine-rich repeat (L 98.7 1.1E-09 2.3E-14 114.9 -3.9 145 75-233 99-245 (722)
33 KOG1259 Nischarin, modulator o 98.7 4.5E-09 9.8E-14 101.4 0.4 125 303-433 284-412 (490)
34 KOG1909 Ran GTPase-activating 98.6 1.8E-09 4E-14 106.9 -4.1 132 301-432 155-310 (382)
35 PRK15386 type III secretion pr 98.6 1.8E-07 4E-12 97.8 9.6 119 623-765 50-169 (426)
36 KOG1259 Nischarin, modulator o 98.6 1.2E-08 2.7E-13 98.5 0.3 99 178-279 285-384 (490)
37 KOG0531 Protein phosphatase 1, 98.4 5.1E-08 1.1E-12 106.9 -0.7 103 97-209 70-172 (414)
38 KOG4341 F-box protein containi 98.4 1.8E-08 3.8E-13 102.3 -4.7 80 131-210 140-227 (483)
39 KOG4341 F-box protein containi 98.3 1.3E-08 2.9E-13 103.1 -6.3 289 100-426 139-458 (483)
40 PRK15386 type III secretion pr 98.3 1.6E-06 3.5E-11 90.9 8.7 139 624-796 71-214 (426)
41 KOG2120 SCF ubiquitin ligase, 98.3 3.3E-08 7.2E-13 95.6 -3.5 173 100-279 186-373 (419)
42 PF13855 LRR_8: Leucine rich r 98.3 5.8E-07 1.3E-11 68.6 3.4 56 153-209 2-59 (61)
43 KOG0531 Protein phosphatase 1, 98.3 1.3E-07 2.7E-12 103.8 -0.5 123 74-209 72-196 (414)
44 KOG2120 SCF ubiquitin ligase, 98.3 4.1E-08 8.9E-13 95.0 -4.2 177 74-257 185-373 (419)
45 KOG2982 Uncharacterized conser 98.2 4.3E-07 9.4E-12 88.1 1.3 89 172-260 66-159 (418)
46 PLN03150 hypothetical protein; 98.2 4.3E-06 9.4E-11 96.1 9.2 109 100-216 419-532 (623)
47 PF13855 LRR_8: Leucine rich r 98.2 1.3E-06 2.8E-11 66.6 3.3 59 130-189 2-61 (61)
48 KOG1909 Ran GTPase-activating 98.1 8.7E-07 1.9E-11 88.3 2.1 35 246-280 269-309 (382)
49 PLN03150 hypothetical protein; 98.0 1.5E-05 3.2E-10 91.7 9.0 105 178-283 419-529 (623)
50 KOG2982 Uncharacterized conser 97.8 6.5E-06 1.4E-10 80.1 1.5 60 221-280 198-260 (418)
51 KOG3665 ZYG-1-like serine/thre 97.8 1.1E-05 2.4E-10 92.4 3.4 133 129-261 122-264 (699)
52 KOG1859 Leucine-rich repeat pr 97.6 1.6E-06 3.5E-11 94.0 -6.4 132 66-211 156-291 (1096)
53 PF12799 LRR_4: Leucine Rich r 97.6 8.2E-05 1.8E-09 51.8 4.1 39 153-193 2-40 (44)
54 KOG3665 ZYG-1-like serine/thre 97.5 3.7E-05 8.1E-10 88.1 1.9 100 131-233 150-261 (699)
55 KOG1859 Leucine-rich repeat pr 97.5 2.1E-06 4.5E-11 93.2 -8.0 154 70-233 105-290 (1096)
56 KOG1644 U2-associated snRNP A' 97.5 0.00022 4.8E-09 66.0 6.0 100 131-232 44-150 (233)
57 COG5238 RNA1 Ran GTPase-activa 97.5 1.3E-05 2.8E-10 77.1 -2.3 36 175-210 90-131 (388)
58 KOG1644 U2-associated snRNP A' 97.3 0.00062 1.4E-08 63.1 6.2 82 348-429 60-149 (233)
59 PF12799 LRR_4: Leucine Rich r 97.2 0.00031 6.8E-09 48.8 2.8 13 148-160 20-32 (44)
60 KOG4579 Leucine-rich repeat (L 97.0 6.5E-05 1.4E-09 64.8 -2.2 106 99-210 27-134 (177)
61 KOG4579 Leucine-rich repeat (L 97.0 5.7E-05 1.2E-09 65.1 -2.8 110 75-194 28-140 (177)
62 COG5238 RNA1 Ran GTPase-activa 96.9 0.001 2.3E-08 64.4 4.1 65 197-261 155-228 (388)
63 PF13306 LRR_5: Leucine rich r 96.3 0.01 2.2E-07 53.2 6.7 57 148-207 8-66 (129)
64 KOG2123 Uncharacterized conser 96.2 0.0006 1.3E-08 66.2 -1.9 80 72-162 17-98 (388)
65 PF13306 LRR_5: Leucine rich r 96.0 0.013 2.7E-07 52.6 5.7 57 147-207 53-111 (129)
66 KOG2739 Leucine-rich acidic nu 96.0 0.0045 9.7E-08 60.2 2.8 63 148-211 61-128 (260)
67 KOG2123 Uncharacterized conser 96.0 0.00045 9.7E-09 67.1 -4.1 96 326-426 19-123 (388)
68 KOG2739 Leucine-rich acidic nu 95.8 0.0044 9.5E-08 60.3 1.8 103 325-431 42-154 (260)
69 KOG1947 Leucine rich repeat pr 95.6 0.0013 2.8E-08 74.3 -2.9 34 399-432 403-439 (482)
70 KOG1947 Leucine rich repeat pr 95.4 0.0027 5.9E-08 71.7 -1.5 124 131-254 190-328 (482)
71 KOG3864 Uncharacterized conser 94.9 0.0032 6.9E-08 58.7 -2.3 42 752-798 151-192 (221)
72 PF00560 LRR_1: Leucine Rich R 93.0 0.044 9.5E-07 31.5 0.8 16 179-194 2-17 (22)
73 PF00560 LRR_1: Leucine Rich R 92.9 0.041 8.9E-07 31.6 0.6 18 101-118 2-19 (22)
74 PF13504 LRR_7: Leucine rich r 91.6 0.13 2.8E-06 27.4 1.5 16 178-193 2-17 (17)
75 KOG3864 Uncharacterized conser 91.5 0.053 1.1E-06 50.8 -0.1 69 644-714 122-191 (221)
76 PF13504 LRR_7: Leucine rich r 90.2 0.19 4.2E-06 26.7 1.4 15 100-114 2-16 (17)
77 smart00369 LRR_TYP Leucine-ric 80.3 1.4 3E-05 26.4 1.8 19 176-194 1-19 (26)
78 smart00370 LRR Leucine-rich re 80.3 1.4 3E-05 26.4 1.8 19 176-194 1-19 (26)
79 KOG0473 Leucine-rich repeat pr 78.4 0.13 2.9E-06 49.1 -4.5 83 72-163 40-122 (326)
80 smart00370 LRR Leucine-rich re 78.2 1.5 3.2E-05 26.3 1.5 18 99-116 2-19 (26)
81 smart00369 LRR_TYP Leucine-ric 78.2 1.5 3.2E-05 26.3 1.5 18 99-116 2-19 (26)
82 KOG0473 Leucine-rich repeat pr 77.8 0.095 2.1E-06 50.0 -5.7 78 131-210 44-122 (326)
83 smart00367 LRR_CC Leucine-rich 74.2 1.9 4.1E-05 25.8 1.2 16 727-742 2-17 (26)
84 KOG4308 LRR-containing protein 62.5 0.14 3.1E-06 56.5 -9.6 179 76-261 89-304 (478)
85 smart00365 LRR_SD22 Leucine-ri 57.1 9 0.0002 23.0 1.7 16 177-192 2-17 (26)
86 PF13516 LRR_6: Leucine Rich r 53.0 5.6 0.00012 23.1 0.4 13 177-189 2-14 (24)
87 smart00364 LRR_BAC Leucine-ric 52.9 9.3 0.0002 23.0 1.3 18 177-194 2-19 (26)
88 KOG3763 mRNA export factor TAP 44.6 9.3 0.0002 42.0 0.8 77 350-426 216-307 (585)
89 KOG4308 LRR-containing protein 41.7 1 2.2E-05 49.9 -7.2 155 72-233 113-301 (478)
90 KOG3763 mRNA export factor TAP 39.6 15 0.00032 40.5 1.3 80 324-403 216-307 (585)
91 PF05725 FNIP: FNIP Repeat; I 35.9 60 0.0013 22.3 3.5 33 726-761 11-43 (44)
92 smart00368 LRR_RI Leucine rich 34.7 28 0.0006 21.2 1.5 14 177-190 2-15 (28)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.4e-38 Score=383.51 Aligned_cols=367 Identities=20% Similarity=0.267 Sum_probs=296.0
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCC-Cccccccc-ccccCCCCCCCccEEEcCCCCCCCCcccccCC
Q 003420 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGF-KSLDLSSK-TEKKSEPEKLPMKLLVLRSCNLLNGIGDIELL 151 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l 151 (821)
.+++.|++++|.+.+.++. .|..+++|++|++++|.+ +.+|..+. .+.+ |++|++++|++.+..+. +.+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~-------L~~L~Ls~n~l~~~~p~-~~l 139 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSS-------LRYLNLSNNNFTGSIPR-GSI 139 (968)
T ss_pred CcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCC-------CCEEECcCCccccccCc-ccc
Confidence 4799999999998876654 578899999999999998 47887665 7777 99999999988765443 568
Q ss_pred CCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCC-cCcC-cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEe
Q 003420 152 KKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMK-FLPS-LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIID 228 (821)
Q Consensus 152 ~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~-~lp~-l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~ 228 (821)
++|++|++++|...+.+|..+ +++++|++|++++|.+. .+|. ++++++|++|++++|.+.+.+|. +.++++|+.|+
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred CCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 999999999977767788775 89999999999999876 4777 99999999999999988888887 89999999999
Q ss_pred ecCCCCCCccChhhccCCCCCCEeeccCcCCcC-CCC-cCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCc
Q 003420 229 LSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKR-LPK-FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLS 306 (821)
Q Consensus 229 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 306 (821)
+++|...+.+| ..++++++|++|++++|.+.+ +|. ++.+++|+.|++++|.....++ ..+..+++|+
T Consensus 219 L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----------~~l~~l~~L~ 287 (968)
T PLN00113 219 LGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP----------PSIFSLQKLI 287 (968)
T ss_pred CcCCccCCcCC-hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc----------hhHhhccCcC
Confidence 99988555666 678999999999999998875 554 8888999999998876433332 1255678899
Q ss_pred EEEecCCCCCCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCC-CCCC-ccccccccEEEeec
Q 003420 307 ELHLRDCPTLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLK-SLPP-LSNLHRLRKLFLKN 383 (821)
Q Consensus 307 ~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~-~~~l~~L~~L~l~~ 383 (821)
+|++++|.....+| .+..+++|+.|++++|.... ..+..+..+++|+.|++++|.+. .+|. ++.+++|+.|++++
T Consensus 288 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred EEECcCCeeccCCChhHcCCCCCcEEECCCCccCC--cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence 99999887776776 57788899999999888654 67778888899999999999887 5666 88889999999999
Q ss_pred CCCcCcCCC-CCCCCCcCEEeccCCCCCCcCCC-CCCCCCCCEEEeeCCCCCccCCCccccCCCCCchhhhhcccceeee
Q 003420 384 CELLEELPK-MNGLENLEVLDLSGCSKLVEFPK-LKDFPKLELLDISNTGIKVVPSDISVTSSNFTPDEKHRQASGVFNL 461 (821)
Q Consensus 384 ~~~~~~l~~-~~~l~~L~~L~l~~c~~l~~i~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l 461 (821)
|++.+.+|. +..+++|+.|++++|...+.+|. +..+++|+.|++++|.++. ..+. .+..++.++.+++
T Consensus 366 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~--~~p~--------~~~~l~~L~~L~L 435 (968)
T PLN00113 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG--ELPS--------EFTKLPLVYFLDI 435 (968)
T ss_pred CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee--ECCh--------hHhcCCCCCEEEC
Confidence 987777765 66788899999998887777777 8888999999999988842 1121 2334567778888
Q ss_pred cccccCCCCccc
Q 003420 462 VGSLAKGKKPLI 473 (821)
Q Consensus 462 ~~n~~~~~~p~~ 473 (821)
++|.+.+..|..
T Consensus 436 s~N~l~~~~~~~ 447 (968)
T PLN00113 436 SNNNLQGRINSR 447 (968)
T ss_pred cCCcccCccChh
Confidence 888888776644
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.9e-36 Score=365.53 Aligned_cols=312 Identities=23% Similarity=0.281 Sum_probs=190.4
Q ss_pred CcCCcEEEeecCCC-CcccccccccccCCCCCCCccEEEcCCCCCCCCc-cc-ccCCCCccEEeccCCcCCCcCchHhhh
Q 003420 98 MKQLHALAIFNSGF-KSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GD-IELLKKLTVLEISGANSVQKIPDKLLD 174 (821)
Q Consensus 98 l~~L~~L~l~~~~~-~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~ 174 (821)
..+++.|+++++.+ +.++..+..+++ |++|++++|.+.+.. .. +..+++|++|++++|+..+.+|. +
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~-------L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~ 137 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPY-------IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---G 137 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCC-------CCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---c
Confidence 35788899988887 456677777777 888888888877544 33 34788888888888776666774 4
Q ss_pred CCCCccEEEecCCCCC-cCcC-cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCE
Q 003420 175 EMTKLQSLNLSGCQMK-FLPS-LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQM 251 (821)
Q Consensus 175 ~l~~L~~L~l~~~~i~-~lp~-l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 251 (821)
.+++|++|++++|.++ .+|. ++.+++|++|++++|.+.+.+|. +.++++|++|++++|...+.+| ..++++++|++
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~ 216 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKW 216 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccE
Confidence 5788888888888887 4676 88888888888888877777776 7888888888888887555555 67888888888
Q ss_pred eeccCcCCcC-CCC-cCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC-CCCCCCCc
Q 003420 252 IDLSRTQIKR-LPK-FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP-HIAGLKNL 328 (821)
Q Consensus 252 L~l~~~~l~~-l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L 328 (821)
|++++|.+.. +|. ++.+++|++|++++|.....++. .+..+++|++|++.+|.....+| .+..+++|
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~----------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 286 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS----------SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh----------hHhCCCCCCEEECcCCeeeccCchhHhhccCc
Confidence 8888887774 443 56666666666665542222111 13344455555555544433333 34444455
Q ss_pred CEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCC-CCCC-ccccccccEEEeecCCCcCcCCC-CCCCCCcCEEecc
Q 003420 329 EVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLK-SLPP-LSNLHRLRKLFLKNCELLEELPK-MNGLENLEVLDLS 405 (821)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~ 405 (821)
+.|++++|.... ..+..+..+++|+.|++.+|.+. .+|. +..+++|+.|++++|.+.+.+|. ++.+++|+.|+++
T Consensus 287 ~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls 364 (968)
T PLN00113 287 ISLDLSDNSLSG--EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364 (968)
T ss_pred CEEECcCCeecc--CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECC
Confidence 555554444322 34444444444555555444443 2222 44444444444444444434333 3444444444444
Q ss_pred CCCCCCcCCC-CCCCCCCCEEEeeCCCC
Q 003420 406 GCSKLVEFPK-LKDFPKLELLDISNTGI 432 (821)
Q Consensus 406 ~c~~l~~i~~-l~~l~~L~~L~l~~~~~ 432 (821)
+|...+.+|. +..+++|+.|++++|.+
T Consensus 365 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l 392 (968)
T PLN00113 365 TNNLTGEIPEGLCSSGNLFKLILFSNSL 392 (968)
T ss_pred CCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence 4443333333 33444444444444443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.7e-28 Score=251.19 Aligned_cols=336 Identities=24% Similarity=0.332 Sum_probs=284.7
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCc-ccccCCC
Q 003420 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIELLK 152 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~l~ 152 (821)
...++|++++|.+. .+...+|.++++|+.+++..|.++.+|.......+ |+.|+|..|.+.... ..++.++
T Consensus 78 ~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sgh-------l~~L~L~~N~I~sv~se~L~~l~ 149 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGH-------LEKLDLRHNLISSVTSEELSALP 149 (873)
T ss_pred cceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhcccccccccc-------eeEEeeeccccccccHHHHHhHh
Confidence 45678999999997 88888899999999999999999999998888888 999999999887755 5788999
Q ss_pred CccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc--cccCCcccEEe
Q 003420 153 KLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR--INELVRLEIID 228 (821)
Q Consensus 153 ~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~ 228 (821)
.||+||++. +.+..+|..-|..=.++++|++++|.|+.+.. |..+.+|..|.+++|++. .+|. +.++++|+.|+
T Consensus 150 alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 150 ALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLD 227 (873)
T ss_pred hhhhhhhhh-chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhh
Confidence 999999998 57888887666677799999999999999876 999999999999999855 4554 68899999999
Q ss_pred ecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCC--cCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCc
Q 003420 229 LSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK--FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLS 306 (821)
Q Consensus 229 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 306 (821)
+..|. +.......|..+++|+.|.+.+|++..+.. |..+..+++|+++.|..... ...++..+.+|+
T Consensus 228 LnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v----------n~g~lfgLt~L~ 296 (873)
T KOG4194|consen 228 LNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV----------NEGWLFGLTSLE 296 (873)
T ss_pred ccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh----------hcccccccchhh
Confidence 99987 666654678999999999999999998876 78889999999987652221 222367788999
Q ss_pred EEEecCCCCCCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--ccccccccEEEeec
Q 003420 307 ELHLRDCPTLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLKN 383 (821)
Q Consensus 307 ~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~ 383 (821)
.|+++.|...+.-+ .+..+++|+.|++++|.+.. ..+..|..+..|++|++++|.+..+.. +..+++|++|++++
T Consensus 297 ~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~--l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 297 QLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR--LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred hhccchhhhheeecchhhhcccceeEecccccccc--CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC
Confidence 99999986554433 67788999999999999776 677888889999999999999987776 88899999999999
Q ss_pred CCCcCcCCC----CCCCCCcCEEeccCCCCCCcCCC--CCCCCCCCEEEeeCCCCC
Q 003420 384 CELLEELPK----MNGLENLEVLDLSGCSKLVEFPK--LKDFPKLELLDISNTGIK 433 (821)
Q Consensus 384 ~~~~~~l~~----~~~l~~L~~L~l~~c~~l~~i~~--l~~l~~L~~L~l~~~~~~ 433 (821)
|.+...+.. +.++++|+.|++.+| .++.++. |..+++|++|++.+|.+.
T Consensus 375 N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 375 NELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred CeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcce
Confidence 987655432 777999999999985 5777887 999999999999999993
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=8.3e-27 Score=240.27 Aligned_cols=364 Identities=20% Similarity=0.233 Sum_probs=285.2
Q ss_pred ceeEEEecCCCccccccHHHHhcC--cCCcEEEeecCCCCccc-ccccccccCCCCCCCccEEEcCCCCCCCCcccccCC
Q 003420 75 EVSTLLIDGDRLRLEVDEGFLARM--KQLHALAIFNSGFKSLD-LSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELL 151 (821)
Q Consensus 75 ~l~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~l~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l 151 (821)
.-+.|+.+++.+. .+....+.+. ..-++|++++|.+..+. ..|.++.+ |+.+++.+|.+...|......
T Consensus 53 ~~~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~n-------Lq~v~l~~N~Lt~IP~f~~~s 124 (873)
T KOG4194|consen 53 NTRLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPN-------LQEVNLNKNELTRIPRFGHES 124 (873)
T ss_pred CceeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHhcCCc-------ceeeeeccchhhhcccccccc
Confidence 4456777777665 3322222221 34567999999996664 45678888 999999999888765555556
Q ss_pred CCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEe
Q 003420 152 KKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIID 228 (821)
Q Consensus 152 ~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~ 228 (821)
.+|+.|++.+ +.+..+..+-+.-++.||.||++.|.|+.+|. +..-.++++|++++|.+...-.. +..+.+|..|.
T Consensus 125 ghl~~L~L~~-N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 125 GHLEKLDLRH-NLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred cceeEEeeec-cccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 6799999997 57888877777899999999999999999987 88889999999999987664333 88888999999
Q ss_pred ecCCCCCCccChhhccCCCCCCEeeccCcCCcCCC--CcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCc
Q 003420 229 LSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLP--KFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLS 306 (821)
Q Consensus 229 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 306 (821)
+++|+ ++.+|...|.++++|+.|++..|.|.... .|..+++|+.|.+..|...+--.+ .+..+.+++
T Consensus 204 LsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG----------~Fy~l~kme 272 (873)
T KOG4194|consen 204 LSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG----------AFYGLEKME 272 (873)
T ss_pred cccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc----------ceeeecccc
Confidence 99988 89999889999999999999999988653 488999999999987643221111 166788999
Q ss_pred EEEecCCCCCCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--ccccccccEEEeec
Q 003420 307 ELHLRDCPTLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLKN 383 (821)
Q Consensus 307 ~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~ 383 (821)
+|++..|.....-. ++.+++.|+.|++++|.+.. +-.+.|.-+++|+.|+++.|.++.++. +..+..|+.|+++.
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r--ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR--IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH 350 (873)
T ss_pred eeecccchhhhhhcccccccchhhhhccchhhhhe--eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc
Confidence 99999986554443 78889999999999999776 667788888999999999999999998 88999999999999
Q ss_pred CCCcCcCCC--CCCCCCcCEEeccCCCCCCcCCC----CCCCCCCCEEEeeCCCCCccCCCccccCCCCCchhhhhcccc
Q 003420 384 CELLEELPK--MNGLENLEVLDLSGCSKLVEFPK----LKDFPKLELLDISNTGIKVVPSDISVTSSNFTPDEKHRQASG 457 (821)
Q Consensus 384 ~~~~~~l~~--~~~l~~L~~L~l~~c~~l~~i~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 457 (821)
|. ++.+.. +..+.+|++||+++|..-..+.. |..+++|+.|++.+|++..+++-. ..-+..++
T Consensus 351 Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krA----------fsgl~~LE 419 (873)
T KOG4194|consen 351 NS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRA----------FSGLEALE 419 (873)
T ss_pred cc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhh----------hccCcccc
Confidence 97 444443 77889999999999875444332 888999999999999997554322 12235566
Q ss_pred eeeecccccCCCCc
Q 003420 458 VFNLVGSLAKGKKP 471 (821)
Q Consensus 458 ~l~l~~n~~~~~~p 471 (821)
.|||.+|.+....|
T Consensus 420 ~LdL~~NaiaSIq~ 433 (873)
T KOG4194|consen 420 HLDLGDNAIASIQP 433 (873)
T ss_pred eecCCCCcceeecc
Confidence 77777776655444
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=1.9e-28 Score=241.61 Aligned_cols=261 Identities=25% Similarity=0.348 Sum_probs=204.7
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCC
Q 003420 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKK 153 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~ 153 (821)
..+..+.+++|.+. .+..+ ..++..|.+|++.+|...++|++++.+.. ++.++++.|++...++.++.+.+
T Consensus 45 v~l~~lils~N~l~-~l~~d-l~nL~~l~vl~~~~n~l~~lp~aig~l~~-------l~~l~vs~n~ls~lp~~i~s~~~ 115 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLRED-LKNLACLTVLNVHDNKLSQLPAAIGELEA-------LKSLNVSHNKLSELPEQIGSLIS 115 (565)
T ss_pred cchhhhhhccCchh-hccHh-hhcccceeEEEeccchhhhCCHHHHHHHH-------HHHhhcccchHhhccHHHhhhhh
Confidence 35678889999886 45444 47899999999999999999999999999 99999999999998899999999
Q ss_pred ccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCC
Q 003420 154 LTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGA 232 (821)
Q Consensus 154 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~ 232 (821)
|+.++.++ +....+|+++ +.+..|+.|+..+|+++.+|. +..+.++..+++.+|+.....|..-.|+.|++++...|
T Consensus 116 l~~l~~s~-n~~~el~~~i-~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N 193 (565)
T KOG0472|consen 116 LVKLDCSS-NELKELPDSI-GRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN 193 (565)
T ss_pred hhhhhccc-cceeecCchH-HHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh
Confidence 99999998 4678888887 789999999999999999999 99999999999999886666566555999999998876
Q ss_pred CCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecC
Q 003420 233 TSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRD 312 (821)
Q Consensus 233 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 312 (821)
- ++.+| ..++.+.+|..|++..|++..+|.|..+..|.++.++.+
T Consensus 194 ~-L~tlP-~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N--------------------------------- 238 (565)
T KOG0472|consen 194 L-LETLP-PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGEN--------------------------------- 238 (565)
T ss_pred h-hhcCC-hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhccc---------------------------------
Confidence 5 78888 689999999999999999999998777666666655543
Q ss_pred CCCCCCCC--CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC-ccccccccEEEeecCCC
Q 003420 313 CPTLKRLP--HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP-LSNLHRLRKLFLKNCEL 386 (821)
Q Consensus 313 ~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l~~~~~ 386 (821)
.+..+| ....++++..|++..|+..+ .|+.+.-+.+|+.|++++|.++++|. ++++ .|+.|.+.||++
T Consensus 239 --~i~~lpae~~~~L~~l~vLDLRdNklke---~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 239 --QIEMLPAEHLKHLNSLLVLDLRDNKLKE---VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred --HHHhhHHHHhcccccceeeecccccccc---CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 233333 23345566666666665433 55556666666666666666666666 6666 666666666664
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=6.4e-27 Score=254.12 Aligned_cols=409 Identities=19% Similarity=0.202 Sum_probs=319.8
Q ss_pred ceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCc
Q 003420 75 EVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKL 154 (821)
Q Consensus 75 ~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L 154 (821)
.+..|++..|.+. ..|.++.++.-+|++|++++|.+..+|..+..+.+ |+.|+++.|.+...+.++.++.+|
T Consensus 22 ~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~-------L~~ln~s~n~i~~vp~s~~~~~~l 93 (1081)
T KOG0618|consen 22 ALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSH-------LRQLNLSRNYIRSVPSSCSNMRNL 93 (1081)
T ss_pred HHHhhhccccccc-cCchHHhhheeeeEEeeccccccccCCchhhhHHH-------HhhcccchhhHhhCchhhhhhhcc
Confidence 4677888888765 55566667777799999999999999999999999 999999999999888889999999
Q ss_pred cEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCC
Q 003420 155 TVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGAT 233 (821)
Q Consensus 155 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~ 233 (821)
+++.|.+ +....+|.++ ..+++|++|++++|.+..+|. +..++.+..+..++|.....++..+ ++.+++..+.
T Consensus 94 ~~lnL~~-n~l~~lP~~~-~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~----ik~~~l~~n~ 167 (1081)
T KOG0618|consen 94 QYLNLKN-NRLQSLPASI-SELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS----IKKLDLRLNV 167 (1081)
T ss_pred hhheecc-chhhcCchhH-HhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcccc----chhhhhhhhh
Confidence 9999996 6889999997 899999999999999999999 9999999999999984343444433 7778888777
Q ss_pred CCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCC
Q 003420 234 SLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDC 313 (821)
Q Consensus 234 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 313 (821)
..+.++ ..+..++. .|++++|.+. ...+..+.+|+.+....+.. ..+ ...-++++.|+..+|
T Consensus 168 l~~~~~-~~i~~l~~--~ldLr~N~~~-~~dls~~~~l~~l~c~rn~l-s~l-------------~~~g~~l~~L~a~~n 229 (1081)
T KOG0618|consen 168 LGGSFL-IDIYNLTH--QLDLRYNEME-VLDLSNLANLEVLHCERNQL-SEL-------------EISGPSLTALYADHN 229 (1081)
T ss_pred cccchh-cchhhhhe--eeecccchhh-hhhhhhccchhhhhhhhccc-ceE-------------EecCcchheeeeccC
Confidence 556665 45666665 6999999988 44566667777766554431 111 224568999999998
Q ss_pred CCCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC-ccccccccEEEeecCCCcCcCCC
Q 003420 314 PTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP-LSNLHRLRKLFLKNCELLEELPK 392 (821)
Q Consensus 314 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l~~~~~~~~l~~ 392 (821)
...... ......+|++++++.+.... +|+|.+.+.+|+.+.+.+|.++.+|. +....+|+.|.+..|.+....+.
T Consensus 230 ~l~~~~-~~p~p~nl~~~dis~n~l~~---lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~ 305 (1081)
T KOG0618|consen 230 PLTTLD-VHPVPLNLQYLDISHNNLSN---LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPF 305 (1081)
T ss_pred cceeec-cccccccceeeecchhhhhc---chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCc
Confidence 776333 33445689999999998554 66999999999999999999999998 88999999999999985444444
Q ss_pred CCCCCCcCEEeccCCCCCCcCCC--CCCCCC-CCEEEeeCCCCCccCCCccccCCCCCchhhhhcccceeeecccccCCC
Q 003420 393 MNGLENLEVLDLSGCSKLVEFPK--LKDFPK-LELLDISNTGIKVVPSDISVTSSNFTPDEKHRQASGVFNLVGSLAKGK 469 (821)
Q Consensus 393 ~~~l~~L~~L~l~~c~~l~~i~~--l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~n~~~~~ 469 (821)
...+.+|++|++..|+ +...|. +..... |..|+.+.+++...|...+ .....++.|.+.+|.+.+.
T Consensus 306 le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e----------~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE----------NNHAALQELYLANNHLTDS 374 (1081)
T ss_pred ccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccc----------hhhHHHHHHHHhcCccccc
Confidence 6779999999999864 666666 444444 7788888888865543322 2346678888999999886
Q ss_pred CccccccCcceeeccCccccCCCcccccccceeccCCcccccCCCCcchh---cccCCCCCCCCCccCCcccCCCCchhH
Q 003420 470 KPLILANDGQIFQSDTGIKADPSEIAATSSNVVPDKKHRQAHGKKPSVLV---NDGGNSQSNDGMEADPSKISAPKSANE 546 (821)
Q Consensus 470 ~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~---~L~~L~ls~~~~~~~~~~l~~l~~L~~ 546 (821)
.-+. ......+++++|++|++...-.+.+. .||.|++|+|.++.+|.++.++..|+.
T Consensus 375 c~p~--------------------l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 375 CFPV--------------------LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHT 434 (1081)
T ss_pred chhh--------------------hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHH
Confidence 5322 23345678899999998875555444 488999999999999999999999996
Q ss_pred HHHh
Q 003420 547 VTDK 550 (821)
Q Consensus 547 l~~~ 550 (821)
+.++
T Consensus 435 L~ah 438 (1081)
T KOG0618|consen 435 LRAH 438 (1081)
T ss_pred Hhhc
Confidence 5554
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=2.7e-26 Score=237.82 Aligned_cols=340 Identities=22% Similarity=0.304 Sum_probs=244.2
Q ss_pred cccccceecccCcceeecCCC-CCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCC--CcccccccccccCCCC
Q 003420 51 RIALGRITQIDGMIKTICDPK-KWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGF--KSLDLSSKTEKKSEPE 127 (821)
Q Consensus 51 ~~~l~~~~~~~~~~~~~~~~~-~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~--~~l~~~~~~l~~~~~~ 127 (821)
+..++.+......+..++... .+.+|++|.+.+|++. .+..+ +..++.||++.+..|++ ..+|..+..+..
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~d---- 104 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKD---- 104 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchhhHHHhhhccccccCCCCchhccccc----
Confidence 344444444444444444322 5789999999999986 45443 57899999999999998 789999999999
Q ss_pred CCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC-cCCCCcccEEEc
Q 003420 128 KLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS-LSKLFNLRFLIL 206 (821)
Q Consensus 128 ~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l 206 (821)
|.+||++.|++...+..+.+.+++-+|++++ +.+..||...|.+++.|-+||+++|.+..+|. +..+.+|++|.+
T Consensus 105 ---Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 105 ---LTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred ---ceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhc
Confidence 9999999999999888899999999999998 57899999999999999999999999999998 999999999999
Q ss_pred cCCCCCC-CCcccccCCcccEEeecCCCC-CCccChhhccCCCCCCEeeccCcCCcCCCC-cCCCCCCceEeecCccccc
Q 003420 207 RDCSSLQ-KLPRINELVRLEIIDLSGATS-LTFFPEQDLSKHQHLQMIDLSRTQIKRLPK-FGYLKRLSRISIEGCKRFH 283 (821)
Q Consensus 207 ~~~~~~~-~l~~l~~l~~L~~L~l~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~ 283 (821)
++|.... .+-.+..|++|+.|.+++.+. +..+| .++..+.+|+.+|++.|.+..+|. +..+++|+.|++++|.. +
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P-tsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i-t 258 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP-TSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI-T 258 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCC-CchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce-e
Confidence 9987533 333466778888999988653 35677 688889999999999999999887 77888888888888642 1
Q ss_pred cccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCC
Q 003420 284 NFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNT 362 (821)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 362 (821)
.+... .....+|.+|+++.| .+..+| .+.+++.|+.|.+.+|.... +.+|..++.+.+|+.+..++|
T Consensus 259 eL~~~----------~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~F-eGiPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 259 ELNMT----------EGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTF-EGIPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred eeecc----------HHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccc-cCCccchhhhhhhHHHHhhcc
Confidence 11110 222345556666655 333333 55556666666665555333 555666666666666666666
Q ss_pred CCCCCCC-ccccccccEEEeecCCCcCcCCCCCCCCCcCEEeccCCCCCCcCC
Q 003420 363 KLKSLPP-LSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDLSGCSKLVEFP 414 (821)
Q Consensus 363 ~l~~l~~-~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~i~ 414 (821)
.+.-+|. +..+..|+.|.++.|.+++-...+.-++.|+.||+..|+.+...|
T Consensus 327 ~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 327 KLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 6655555 566666666666666544433335555666666666655554443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=5.9e-26 Score=235.25 Aligned_cols=336 Identities=23% Similarity=0.337 Sum_probs=212.3
Q ss_pred CCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCC
Q 003420 73 WDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLK 152 (821)
Q Consensus 73 ~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~ 152 (821)
++-++..++++|.++|.-.......|++++-|.|...++..+|..++.+.+ |++|.+..|++...-..++.++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqk-------LEHLs~~HN~L~~vhGELs~Lp 78 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQK-------LEHLSMAHNQLISVHGELSDLP 78 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhh-------hhhhhhhhhhhHhhhhhhccch
Confidence 456777888888877544333356778888888888777888887877777 7777777777766556677777
Q ss_pred CccEEeccCCcC-CCcCchHhhhCCCCccEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCcc--cccCCcccEEe
Q 003420 153 KLTVLEISGANS-VQKIPDKLLDEMTKLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLPR--INELVRLEIID 228 (821)
Q Consensus 153 ~L~~L~l~~~~~-~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~ 228 (821)
.||.+.+..|+. -..+|.++| ++..|.+||+++|++..+|. +..-+++-.|++++|++ ..+|. +-++..|-.|+
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhc
Confidence 777777776543 234777764 57777777777777777777 77777777777777654 33444 56777777777
Q ss_pred ecCCCCCCccChhhccCCCCCCEeeccCcCCcC--CCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCc
Q 003420 229 LSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKR--LPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLS 306 (821)
Q Consensus 229 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~--l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 306 (821)
++.|+ +..+|+ .+..+..|++|++++|.+.. +..+..+++|+.|.+++.+. .-.+.+..+..+.+|+
T Consensus 157 LS~Nr-Le~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR---------Tl~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 157 LSNNR-LEMLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR---------TLDNIPTSLDDLHNLR 225 (1255)
T ss_pred cccch-hhhcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc---------hhhcCCCchhhhhhhh
Confidence 77766 666764 56667777777777776663 33455666666666665421 1112222244555666
Q ss_pred EEEecCCCCCCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC-ccccccccEEEeecC
Q 003420 307 ELHLRDCPTLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP-LSNLHRLRKLFLKNC 384 (821)
Q Consensus 307 ~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l~~~ 384 (821)
.++++.| .+..+| .+-++++|+.|++++|.+........ ...+|++|++++|+++.+|+ +-.++.|+.|.+.+|
T Consensus 226 dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~---~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 226 DVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEG---EWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred hcccccc-CCCcchHHHhhhhhhheeccCcCceeeeeccHH---HHhhhhhhccccchhccchHHHhhhHHHHHHHhccC
Confidence 6666665 333333 55566666677776666544222222 22456666666666666666 666666666666666
Q ss_pred CCc-CcCCC-CCCCCCcCEEeccCCCCCCcCCC-CCCCCCCCEEEeeCCCCC
Q 003420 385 ELL-EELPK-MNGLENLEVLDLSGCSKLVEFPK-LKDFPKLELLDISNTGIK 433 (821)
Q Consensus 385 ~~~-~~l~~-~~~l~~L~~L~l~~c~~l~~i~~-l~~l~~L~~L~l~~~~~~ 433 (821)
++. +.+|. ++.+.+|+++...+ +.++-+|. +..|++|+.|.++.|.+.
T Consensus 302 kL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 302 KLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred cccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccccccee
Confidence 542 23333 55566666666654 34555555 666666666666666654
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=6.2e-22 Score=241.87 Aligned_cols=298 Identities=26% Similarity=0.424 Sum_probs=184.7
Q ss_pred CceeEEEecCCCcc-ccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCC
Q 003420 74 DEVSTLLIDGDRLR-LEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLK 152 (821)
Q Consensus 74 ~~l~~L~l~~n~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~ 152 (821)
.+++.+.+....+. -.+....|.+|++|+.|.+..+...... . .+ ...+..+..++
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~-------~-------~~---------~~lp~~~~~lp 588 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKK-------E-------VR---------WHLPEGFDYLP 588 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccc-------c-------ce---------eecCcchhhcC
Confidence 45666665544432 2345667888888888888665431100 0 00 01122333433
Q ss_pred -CccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCcccccCCcccEEeec
Q 003420 153 -KLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLS 230 (821)
Q Consensus 153 -~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~ 230 (821)
+|+.|++.+ +....+|..+ .+.+|++|++.++.+..+|. +..+++|++|+++++.....+|.+..+++|+.|+++
T Consensus 589 ~~Lr~L~~~~-~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 589 PKLRLLRWDK-YPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLS 665 (1153)
T ss_pred cccEEEEecC-CCCCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEec
Confidence 577777776 4567777765 56788888888888888877 778888888888887777777878888888888888
Q ss_pred CCCCCCccChhhccCCCCCCEeeccCc-CCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEE
Q 003420 231 GATSLTFFPEQDLSKHQHLQMIDLSRT-QIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELH 309 (821)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 309 (821)
+|..+..+| ..++++++|+.|++++| .++.+|....+++|+.|++++|..+..++. ...+|++|+
T Consensus 666 ~c~~L~~lp-~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~-------------~~~nL~~L~ 731 (1153)
T PLN03210 666 DCSSLVELP-SSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD-------------ISTNISWLD 731 (1153)
T ss_pred CCCCccccc-hhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc-------------ccCCcCeee
Confidence 887777777 57888888888888874 566677655677888888888766555432 234677777
Q ss_pred ecCCCCCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--ccccccccEEEeecCCCc
Q 003420 310 LRDCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLKNCELL 387 (821)
Q Consensus 310 l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~~ 387 (821)
+.++. +..+|....+++|+.|.+.++.... ....+ ..++. ....++|+.|++++|...
T Consensus 732 L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~---l~~~~----------------~~l~~~~~~~~~sL~~L~Ls~n~~l 791 (1153)
T PLN03210 732 LDETA-IEEFPSNLRLENLDELILCEMKSEK---LWERV----------------QPLTPLMTMLSPSLTRLFLSDIPSL 791 (1153)
T ss_pred cCCCc-cccccccccccccccccccccchhh---ccccc----------------cccchhhhhccccchheeCCCCCCc
Confidence 77764 4455543456667777666543211 00000 00111 122345566666666555
Q ss_pred CcCCC-CCCCCCcCEEeccCCCCCCcCCCCCCCCCCCEEEeeCCC
Q 003420 388 EELPK-MNGLENLEVLDLSGCSKLVEFPKLKDFPKLELLDISNTG 431 (821)
Q Consensus 388 ~~l~~-~~~l~~L~~L~l~~c~~l~~i~~l~~l~~L~~L~l~~~~ 431 (821)
..+|. ++++++|+.|++++|..++.+|...++++|+.|++++|.
T Consensus 792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 792 VELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCS 836 (1153)
T ss_pred cccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCC
Confidence 55554 555666666666666666666553355666666666543
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=6.6e-27 Score=230.80 Aligned_cols=166 Identities=21% Similarity=0.315 Sum_probs=90.7
Q ss_pred CCCcCEEEecCCCCCCcccChhhhcCC--CCCcEEEecCCCCCCCCC-ccccccccEEEeecCCCcCcCCC-CCCCCCcC
Q 003420 325 LKNLEVLDVSGTSDSKFAISDESFHDL--DYLRELNLSNTKLKSLPP-LSNLHRLRKLFLKNCELLEELPK-MNGLENLE 400 (821)
Q Consensus 325 ~~~L~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~l~~L~ 400 (821)
..+.+.|++++-.... ...+.|..- .-....++++|++.++|. +..+..+...-+..++....+|. +..+++|.
T Consensus 361 ~i~tkiL~~s~~qlt~--VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt 438 (565)
T KOG0472|consen 361 IITTKILDVSDKQLTL--VPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLT 438 (565)
T ss_pred hhhhhhhccccccccc--CCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcce
Confidence 3455555555544332 222222211 124556666666666666 44444444333333333444443 56667777
Q ss_pred EEeccCCCCCCcCCC-CCCCCCCCEEEeeCCCCCccCCCccccCCCCCchhhhhcccceeeecccccCCCCccccccCcc
Q 003420 401 VLDLSGCSKLVEFPK-LKDFPKLELLDISNTGIKVVPSDISVTSSNFTPDEKHRQASGVFNLVGSLAKGKKPLILANDGQ 479 (821)
Q Consensus 401 ~L~l~~c~~l~~i~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~p~~~~~~~~ 479 (821)
.|++++ +.+.++|. ++.+..|+.++++.|.+...|++-.. ...++.+-.++
T Consensus 439 ~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~-----------lq~lEtllas~---------------- 490 (565)
T KOG0472|consen 439 FLDLSN-NLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYE-----------LQTLETLLASN---------------- 490 (565)
T ss_pred eeeccc-chhhhcchhhhhhhhhheecccccccccchHHHhh-----------HHHHHHHHhcc----------------
Confidence 777775 34566666 66666677777777765433332221 11112211122
Q ss_pred eeeccCccccCCCcccccccceeccCCcccccCCCCc---chhcccCCCCCCCCCccCCcccCCCCchhHHH
Q 003420 480 IFQSDTGIKADPSEIAATSSNVVPDKKHRQAHGKKPS---VLVNDGGNSQSNDGMEADPSKISAPKSANEVT 548 (821)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~p~---~~~~L~~L~ls~~~~~~~~~~l~~l~~L~~l~ 548 (821)
|++...-|+ .+.+|..||+.+|.+..+|+.++++++|+.+.
T Consensus 491 ----------------------------nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLe 534 (565)
T KOG0472|consen 491 ----------------------------NQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLE 534 (565)
T ss_pred ----------------------------ccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEE
Confidence 222222222 25668999999999999999999999988543
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.4e-21 Score=238.85 Aligned_cols=337 Identities=26% Similarity=0.428 Sum_probs=268.3
Q ss_pred CCCceeEEEecCCC------ccccccHHHHhcC-cCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCC
Q 003420 72 KWDEVSTLLIDGDR------LRLEVDEGFLARM-KQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNG 144 (821)
Q Consensus 72 ~~~~l~~L~l~~n~------~~~~~~~~~~~~l-~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 144 (821)
.+++|+.|.+..+. ....++.+ |..+ ++||.|++.++.+..+|..+ ...+ |++|++.++.+...
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~-------L~~L~L~~s~l~~L 626 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKYPLRCMPSNF-RPEN-------LVKLQMQGSKLEKL 626 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCCCCCCCCCcC-CccC-------CcEEECcCcccccc
Confidence 46788999887653 22345555 3444 57999999999999999877 4566 99999999998887
Q ss_pred cccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCC-CCCcCcC-cCCCCcccEEEccCCCCCCCCcccccCC
Q 003420 145 IGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGC-QMKFLPS-LSKLFNLRFLILRDCSSLQKLPRINELV 222 (821)
Q Consensus 145 ~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~-~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~~l~~l~ 222 (821)
+..+..+++|++|++++++.++.+|. ++.+++|++|++++| .+..+|. ++.+++|+.|++++|.....+|...+++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~ 704 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLK 704 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCC
Confidence 77889999999999999888888885 488999999999997 4677898 9999999999999998888888855899
Q ss_pred cccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCC
Q 003420 223 RLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFP 302 (821)
Q Consensus 223 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 302 (821)
+|+.|++++|..++.+|. ...+|+.|++++|.++.+|....+++|+.|.+.++............ .......+
T Consensus 705 sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l---~~~~~~~~ 777 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPL---TPLMTMLS 777 (1153)
T ss_pred CCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccccccccccccccccccccchhhcccccccc---chhhhhcc
Confidence 999999999987777763 25689999999999999998667888999888765422111111100 00112345
Q ss_pred CCCcEEEecCCCCCCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCC-CCCCCCCccccccccEEE
Q 003420 303 VSLSELHLRDCPTLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNT-KLKSLPPLSNLHRLRKLF 380 (821)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l~~~~~l~~L~~L~ 380 (821)
++|+.|++++|.....+| .++++++|+.|++++|.... .+|... .+++|+.|++++| .+..+|.+ ..+|+.|+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~--~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~ 852 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE--TLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLN 852 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC--eeCCCC-CccccCEEECCCCCcccccccc--ccccCEeE
Confidence 789999999998888888 78899999999999987555 455444 6789999999997 45566653 36899999
Q ss_pred eecCCCcCcCCC-CCCCCCcCEEeccCCCCCCcCCC-CCCCCCCCEEEeeCCCC
Q 003420 381 LKNCELLEELPK-MNGLENLEVLDLSGCSKLVEFPK-LKDFPKLELLDISNTGI 432 (821)
Q Consensus 381 l~~~~~~~~l~~-~~~l~~L~~L~l~~c~~l~~i~~-l~~l~~L~~L~l~~~~~ 432 (821)
+++|.+ +.+|. +..+++|+.|++.+|+.+..+|. ...++.|+.+++++|..
T Consensus 853 Ls~n~i-~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 853 LSRTGI-EEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CCCCCC-ccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 999874 45554 78899999999999999999888 78899999999998864
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=1.8e-22 Score=219.91 Aligned_cols=408 Identities=20% Similarity=0.179 Sum_probs=289.4
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCC
Q 003420 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKK 153 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~ 153 (821)
-+|+.|+++.|.+. ..|..+ ..+.+|+.|+++.|.+.++|.+.+++.. |+++.|..|.....+.++..+++
T Consensus 45 v~L~~l~lsnn~~~-~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~-------l~~lnL~~n~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQIS-SFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRN-------LQYLNLKNNRLQSLPASISELKN 115 (1081)
T ss_pred eeeEEeeccccccc-cCCchh-hhHHHHhhcccchhhHhhCchhhhhhhc-------chhheeccchhhcCchhHHhhhc
Confidence 35999999999985 777664 5689999999999999999999999999 99999999988888889999999
Q ss_pred ccEEeccCCcCCCcCchHhhhCCCCccEEEecCC-CCCcCcCcCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecC
Q 003420 154 LTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGC-QMKFLPSLSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSG 231 (821)
Q Consensus 154 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~-~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~ 231 (821)
|++|++++ +..+.+|.-+ ..++.+..+..++| .+..++. .. ++++++..+.....++. +..+.+ .|+++.
T Consensus 116 l~~LdlS~-N~f~~~Pl~i-~~lt~~~~~~~s~N~~~~~lg~---~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~ 187 (1081)
T KOG0618|consen 116 LQYLDLSF-NHFGPIPLVI-EVLTAEEELAASNNEKIQRLGQ---TS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRY 187 (1081)
T ss_pred ccccccch-hccCCCchhH-HhhhHHHHHhhhcchhhhhhcc---cc-chhhhhhhhhcccchhcchhhhhe--eeeccc
Confidence 99999999 4678888876 78999999999999 3333433 33 77788887776666665 666666 799998
Q ss_pred CCCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEec
Q 003420 232 ATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLR 311 (821)
Q Consensus 232 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 311 (821)
|.. .. ..+..+.+|+.+....|.+..+.. .-++|+.|+...|...+... ...+.+|+.++++
T Consensus 188 N~~-~~---~dls~~~~l~~l~c~rn~ls~l~~--~g~~l~~L~a~~n~l~~~~~------------~p~p~nl~~~dis 249 (1081)
T KOG0618|consen 188 NEM-EV---LDLSNLANLEVLHCERNQLSELEI--SGPSLTALYADHNPLTTLDV------------HPVPLNLQYLDIS 249 (1081)
T ss_pred chh-hh---hhhhhccchhhhhhhhcccceEEe--cCcchheeeeccCcceeecc------------ccccccceeeecc
Confidence 873 32 457778888888888888776532 33466777777665432221 3345678888888
Q ss_pred CCCCCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC-ccccccccEEEeecCCCcCcC
Q 003420 312 DCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP-LSNLHRLRKLFLKNCELLEEL 390 (821)
Q Consensus 312 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l~~~~~~~~l 390 (821)
.+....-..++..+.+|+.++..+|... .++.......+|+.|++..|.+..+|+ .+.+++|++|++..|++ ..+
T Consensus 250 ~n~l~~lp~wi~~~~nle~l~~n~N~l~---~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L-~~l 325 (1081)
T KOG0618|consen 250 HNNLSNLPEWIGACANLEALNANHNRLV---ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL-PSL 325 (1081)
T ss_pred hhhhhcchHHHHhcccceEecccchhHH---hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc-ccc
Confidence 8744433337778888888888887753 456666666777777777777777776 56677777777777653 222
Q ss_pred C-------------------------C--CCCCCCcCEEeccCCCCCCcCCC-CCCCCCCCEEEeeCCCCCccCCCcccc
Q 003420 391 P-------------------------K--MNGLENLEVLDLSGCSKLVEFPK-LKDFPKLELLDISNTGIKVVPSDISVT 442 (821)
Q Consensus 391 ~-------------------------~--~~~l~~L~~L~l~~c~~l~~i~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~ 442 (821)
| . -..++.|+.|++.+|........ +.++++||.|++++|.+..+ |..
T Consensus 326 p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f---pas- 401 (1081)
T KOG0618|consen 326 PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF---PAS- 401 (1081)
T ss_pred chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC---CHH-
Confidence 2 1 11245678888888776555444 88899999999999988633 321
Q ss_pred CCCCCchhhhhcccceeeecccccCCCCccccccCcc---eeeccCccccCCCcccccccceeccCCcccccCC-CCcch
Q 003420 443 SSNFTPDEKHRQASGVFNLVGSLAKGKKPLILANDGQ---IFQSDTGIKADPSEIAATSSNVVPDKKHRQAHGK-KPSVL 518 (821)
Q Consensus 443 ~~~~~~~l~~~~~l~~l~l~~n~~~~~~p~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~p~~~ 518 (821)
.+..+..++.|+|+||.+.. +|.+..+..+ +....|.+. ..|+....+-++++|+++|+++.. +|...
T Consensus 402 ------~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 402 ------KLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred ------HHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhhhhhhhhhC
Confidence 33445667788899998875 3344433333 222233333 344666667889999999988754 34443
Q ss_pred --hcccCCCCCCCCCc
Q 003420 519 --VNDGGNSQSNDGME 532 (821)
Q Consensus 519 --~~L~~L~ls~~~~~ 532 (821)
++|++||+++|.-.
T Consensus 474 p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNTRL 489 (1081)
T ss_pred CCcccceeeccCCccc
Confidence 46999999999753
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=6.3e-15 Score=167.12 Aligned_cols=257 Identities=22% Similarity=0.251 Sum_probs=139.5
Q ss_pred cCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCC
Q 003420 99 KQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTK 178 (821)
Q Consensus 99 ~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~ 178 (821)
..-..|+++.++++.+|..+.. + |+.|++.+|++...+. ..++|++|++++| .+..+|. ..++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~~--~-------L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N-~LtsLP~----lp~s 263 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLPA--H-------ITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV----LPPG 263 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchhc--C-------CCEEEccCCcCCCCCC---CCCCCcEEEecCC-ccCcccC----cccc
Confidence 3456677777777777766543 4 7777777777665432 2466777777763 4556663 2356
Q ss_pred ccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcC
Q 003420 179 LQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQ 258 (821)
Q Consensus 179 L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 258 (821)
|+.|++++|.++.+|. ..++|+.|++++|.+. .+|. .+++|+.|++++|. +..+|. . ..+|+.|++++|.
T Consensus 264 L~~L~Ls~N~L~~Lp~--lp~~L~~L~Ls~N~Lt-~LP~--~p~~L~~LdLS~N~-L~~Lp~-l---p~~L~~L~Ls~N~ 333 (788)
T PRK15387 264 LLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLT-SLPV--LPPGLQELSVSDNQ-LASLPA-L---PSELCKLWAYNNQ 333 (788)
T ss_pred cceeeccCCchhhhhh--chhhcCEEECcCCccc-cccc--cccccceeECCCCc-cccCCC-C---cccccccccccCc
Confidence 6777777777666664 1245666666666432 3333 23456666666654 444442 1 2345556666666
Q ss_pred CcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcCEEEecCCCC
Q 003420 259 IKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLPHIAGLKNLEVLDVSGTSD 338 (821)
Q Consensus 259 l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 338 (821)
++.+|.+. .+|+.|+++ +|.. ..+|.+ ..+|+.|++++|.+
T Consensus 334 L~~LP~lp--~~Lq~LdLS----------------------------------~N~L-s~LP~l--p~~L~~L~Ls~N~L 374 (788)
T PRK15387 334 LTSLPTLP--SGLQELSVS----------------------------------DNQL-ASLPTL--PSELYKLWAYNNRL 374 (788)
T ss_pred cccccccc--cccceEecC----------------------------------CCcc-CCCCCC--Ccccceehhhcccc
Confidence 65555321 234444444 3321 222211 12444555555443
Q ss_pred CCcccChhhhcCCCCCcEEEecCCCCCCCCCccccccccEEEeecCCCcCcCCCCCCCCCcCEEeccCCCCCCcCCC-CC
Q 003420 339 SKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDLSGCSKLVEFPK-LK 417 (821)
Q Consensus 339 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~i~~-l~ 417 (821)
.. ++.. ..+|+.|++++|.++.+|.. .++|+.|++++|++. .+|.. ..+|+.|++++|. +..+|. +.
T Consensus 375 ~~---LP~l---~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~Ls-sIP~l--~~~L~~L~Ls~Nq-Lt~LP~sl~ 442 (788)
T PRK15387 375 TS---LPAL---PSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLT-SLPML--PSGLLSLSVYRNQ-LTRLPESLI 442 (788)
T ss_pred cc---Cccc---ccccceEEecCCcccCCCCc--ccCCCEEEccCCcCC-CCCcc--hhhhhhhhhccCc-ccccChHHh
Confidence 22 2211 13566666666666665542 245666666666533 34432 2456666666644 445665 66
Q ss_pred CCCCCCEEEeeCCCCC
Q 003420 418 DFPKLELLDISNTGIK 433 (821)
Q Consensus 418 ~l~~L~~L~l~~~~~~ 433 (821)
++++|+.|++++|+++
T Consensus 443 ~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 443 HLSSETTVNLEGNPLS 458 (788)
T ss_pred hccCCCeEECCCCCCC
Confidence 6677777777777664
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=6.3e-15 Score=167.11 Aligned_cols=172 Identities=20% Similarity=0.178 Sum_probs=132.0
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCC
Q 003420 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKK 153 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~ 153 (821)
..-..|+++.+.+. .+|..+. ++|+.|++.+|.++.+|.. ..+ |++|++++|++...+.. .++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~l---p~~-------Lk~LdLs~N~LtsLP~l---p~s 263 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPAL---PPE-------LRTLEVSGNQLTSLPVL---PPG 263 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCCCC---CCC-------CcEEEecCCccCcccCc---ccc
Confidence 44668999999997 7887653 5899999999999988863 345 99999999998875532 468
Q ss_pred ccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCC
Q 003420 154 LTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGAT 233 (821)
Q Consensus 154 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~ 233 (821)
|+.|++++| .+..+|. -..+|+.|++++|+++.+|. .+++|+.|++++|.+.. +|.+ ..+|+.|++++|.
T Consensus 264 L~~L~Ls~N-~L~~Lp~----lp~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~-Lp~l--p~~L~~L~Ls~N~ 333 (788)
T PRK15387 264 LLELSIFSN-PLTHLPA----LPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQ 333 (788)
T ss_pred cceeeccCC-chhhhhh----chhhcCEEECcCCccccccc--cccccceeECCCCcccc-CCCC--cccccccccccCc
Confidence 999999985 5667775 23678899999999999986 34789999999997654 5543 2467888998876
Q ss_pred CCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCc
Q 003420 234 SLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGC 279 (821)
Q Consensus 234 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~ 279 (821)
++.+|. ...+|+.|++++|+++.+|.+ ..+|+.|++.+|
T Consensus 334 -L~~LP~----lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N 372 (788)
T PRK15387 334 -LTSLPT----LPSGLQELSVSDNQLASLPTL--PSELYKLWAYNN 372 (788)
T ss_pred -cccccc----cccccceEecCCCccCCCCCC--Ccccceehhhcc
Confidence 677763 125899999999999998863 245666666554
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.59 E-value=1e-15 Score=177.43 Aligned_cols=130 Identities=20% Similarity=0.258 Sum_probs=96.7
Q ss_pred cccccceecccCcceeecCCCCCCceeEEEecCCCc-cccccHHHHhcCcCCcEEEeecCCC-CcccccccccccCCCCC
Q 003420 51 RIALGRITQIDGMIKTICDPKKWDEVSTLLIDGDRL-RLEVDEGFLARMKQLHALAIFNSGF-KSLDLSSKTEKKSEPEK 128 (821)
Q Consensus 51 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~~~~~~l~~~~~~~ 128 (821)
....+++..+.+.+..+.....++++++|-+..|.. ...++.++|..++.|++||+++|.- .++|..++.+.+
T Consensus 522 ~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~----- 596 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH----- 596 (889)
T ss_pred hhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh-----
Confidence 445566667777777777777777888888888862 2367777788888888888886553 788888888888
Q ss_pred CCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCC
Q 003420 129 LPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQ 188 (821)
Q Consensus 129 ~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~ 188 (821)
||+|+++++.+...|..+++++.|.+|++..+.....+ +.+...+.+||+|.+....
T Consensus 597 --LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 597 --LRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred --hhcccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccc
Confidence 88888888888877778888888888888775544444 3444668888888887665
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.58 E-value=1.6e-16 Score=157.77 Aligned_cols=280 Identities=19% Similarity=0.182 Sum_probs=172.8
Q ss_pred CCcEEEeecCCCCcccc-cccccccCCCCCCCccEEEcCCCCCCCCc-ccccCCCCccEEeccCCcCCCcCchHhhhCCC
Q 003420 100 QLHALAIFNSGFKSLDL-SSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIELLKKLTVLEISGANSVQKIPDKLLDEMT 177 (821)
Q Consensus 100 ~L~~L~l~~~~~~~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~ 177 (821)
.-..++|..|+|+.||. +|+.++. ||.|||+.|+|.... .+|.++++|..|-+.+++.++.+|.+.|+.+.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~-------LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHR-------LRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred cceEEEeccCCcccCChhhccchhh-------hceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 34567788888877774 6777777 888888888877654 46788888888877777778888888888888
Q ss_pred CccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc--cccCCcccEEeecCCCCCCccChhhccCCCCCCEee
Q 003420 178 KLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR--INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMID 253 (821)
Q Consensus 178 ~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 253 (821)
.|+.|.+.-|++.-++. +..+++|..|.+.+|.+. .++. +..+..++.+.+..+..+. ..+++.+....
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic------dCnL~wla~~~ 213 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC------DCNLPWLADDL 213 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc------ccccchhhhHH
Confidence 88888888887777665 778888888888776533 3332 5566666666665543211 11111111110
Q ss_pred ccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC--CCCCCCCcCEE
Q 003420 254 LSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP--HIAGLKNLEVL 331 (821)
Q Consensus 254 l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L 331 (821)
. .+.+. ++...-.....+.+. .+...+ ...+.....++.+-....|......| .+..+++|+.|
T Consensus 214 a-~~~ie----tsgarc~~p~rl~~~-Ri~q~~--------a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~l 279 (498)
T KOG4237|consen 214 A-MNPIE----TSGARCVSPYRLYYK-RINQED--------ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKL 279 (498)
T ss_pred h-hchhh----cccceecchHHHHHH-Hhcccc--------hhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEe
Confidence 0 00000 011110000011000 000000 00000000111111122232333334 57888999999
Q ss_pred EecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--ccccccccEEEeecCCCcCcCCC-CCCCCCcCEEeccCCC
Q 003420 332 DVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLKNCELLEELPK-MNGLENLEVLDLSGCS 408 (821)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~c~ 408 (821)
++++|++.. +-+.+|.+...++.|.+..|++..+.. +.++..|+.|++++|++...-|. |..+.+|.+|.+-.|+
T Consensus 280 nlsnN~i~~--i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 280 NLSNNKITR--IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred ccCCCccch--hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 999998665 677888899999999999999887777 88899999999999987665554 7778888888887665
Q ss_pred C
Q 003420 409 K 409 (821)
Q Consensus 409 ~ 409 (821)
.
T Consensus 358 ~ 358 (498)
T KOG4237|consen 358 F 358 (498)
T ss_pred c
Confidence 4
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.56 E-value=3.5e-16 Score=155.42 Aligned_cols=127 Identities=17% Similarity=0.229 Sum_probs=102.5
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcc-cccccccccCCCCCCCccEEEcCC-CCCCCCc-ccccC
Q 003420 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSL-DLSSKTEKKSEPEKLPMKLLVLRS-CNLLNGI-GDIEL 150 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~-~~i~~ 150 (821)
+....+.|..|.|+ .+|.++|..+++||.|||+.|+|+.| |.+|..+.. |..|.+.+ |+|+..+ ..|++
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~-------l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLAS-------LLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHh-------hhHHHhhcCCchhhhhhhHhhh
Confidence 46678889999997 89999999999999999999999766 567888877 77766655 7887766 46888
Q ss_pred CCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCC
Q 003420 151 LKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDC 209 (821)
Q Consensus 151 l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~ 209 (821)
+..|+-|.+.- +.+..++.+.|..+++|..|.+.+|.+..++. +..+..++++.+..|
T Consensus 139 L~slqrLllNa-n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 139 LSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred HHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 88888888876 46777888888899999999999988888776 777777777776444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=6.3e-14 Score=160.25 Aligned_cols=140 Identities=18% Similarity=0.275 Sum_probs=73.7
Q ss_pred CCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCc
Q 003420 100 QLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKL 179 (821)
Q Consensus 100 ~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L 179 (821)
+.+.|++++++++.+|..+. .+ |+.|++++|++...+..+. .+|++|++++| .+..+|..+ ..+|
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~-------L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l---~~~L 243 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQ-------ITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATL---PDTI 243 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cC-------CcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhh---hccc
Confidence 45666666666666665443 23 6666666666665443332 46666666653 345566543 2356
Q ss_pred cEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCc
Q 003420 180 QSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRT 257 (821)
Q Consensus 180 ~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 257 (821)
+.|++++|.+..+|. +. .+|+.|++++|.+. .+|. +. .+|+.|++++|+ ++.+|. .+ .++|+.|++++|
T Consensus 244 ~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~-Lt~LP~-~l--p~sL~~L~Ls~N 314 (754)
T PRK15370 244 QEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNS-IRTLPA-HL--PSGITHLNVQSN 314 (754)
T ss_pred cEEECcCCccCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCc-cccCcc-cc--hhhHHHHHhcCC
Confidence 666666666666665 32 35666666655433 3333 21 245555555543 444431 11 124555555555
Q ss_pred CCcCCC
Q 003420 258 QIKRLP 263 (821)
Q Consensus 258 ~l~~l~ 263 (821)
.++.+|
T Consensus 315 ~Lt~LP 320 (754)
T PRK15370 315 SLTALP 320 (754)
T ss_pred ccccCC
Confidence 554443
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=7.3e-14 Score=159.73 Aligned_cols=163 Identities=24% Similarity=0.343 Sum_probs=128.3
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCC
Q 003420 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKK 153 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~ 153 (821)
.+...|++.++.+. .+|..+ .++|+.|++++|.+..+|..+. .+ |++|++++|++...+..+ ..+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~n-------L~~L~Ls~N~LtsLP~~l--~~~ 242 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLPENLQ--GN-------IKTLYANSNQLTSIPATL--PDT 242 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCChhhc--cC-------CCEEECCCCccccCChhh--hcc
Confidence 45788999999887 677543 3679999999999999997664 36 999999999988766544 357
Q ss_pred ccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecC
Q 003420 154 LTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSG 231 (821)
Q Consensus 154 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~ 231 (821)
|+.|++++| .+..+|..+. .+|++|++++|+++.+|. +. ++|++|++++|.+. .+|. +. .+|+.|++++
T Consensus 243 L~~L~Ls~N-~L~~LP~~l~---s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 243 IQEMELSIN-RITELPERLP---SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQS 313 (754)
T ss_pred ccEEECcCC-ccCcCChhHh---CCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcC
Confidence 999999985 5678998763 589999999999999987 54 58999999999755 4554 32 4789999998
Q ss_pred CCCCCccChhhccCCCCCCEeeccCcCCcCCCC
Q 003420 232 ATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK 264 (821)
Q Consensus 232 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~ 264 (821)
|. +..+|. .+ .++|+.|++++|.++.+|.
T Consensus 314 N~-Lt~LP~-~l--~~sL~~L~Ls~N~Lt~LP~ 342 (754)
T PRK15370 314 NS-LTALPE-TL--PPGLKTLEAGENALTSLPA 342 (754)
T ss_pred Cc-cccCCc-cc--cccceeccccCCccccCCh
Confidence 87 666763 23 3688999999988887764
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=4.8e-16 Score=136.53 Aligned_cols=151 Identities=27% Similarity=0.415 Sum_probs=79.5
Q ss_pred CCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCC
Q 003420 72 KWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELL 151 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l 151 (821)
+..++++|.+++|.+. .++.+ ...+.+|++|++++|+++++|.++..+.. ||.|+++-|.+...+..|+.+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppn-ia~l~nlevln~~nnqie~lp~~issl~k-------lr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPK-------LRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred chhhhhhhhcccCcee-ecCCc-HHHhhhhhhhhcccchhhhcChhhhhchh-------hhheecchhhhhcCccccCCC
Confidence 3445556666666654 44444 24555666666666666666665555555 666666555555555555555
Q ss_pred CCccEEeccCCcCC-CcCchHhhhCCCCccEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEe
Q 003420 152 KKLTVLEISGANSV-QKIPDKLLDEMTKLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIID 228 (821)
Q Consensus 152 ~~L~~L~l~~~~~~-~~lp~~~~~~l~~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~ 228 (821)
+.|++||+.+|+.. ..+|..+| .|+.|+.|.+++|.+.-+|. ++++++|+.|.+.+|... .+|. ++.+..|++|.
T Consensus 102 p~levldltynnl~e~~lpgnff-~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELH 179 (264)
T ss_pred chhhhhhccccccccccCCcchh-HHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHh
Confidence 55555555554432 23444432 35555555555555555555 555555555555554322 2332 44444444444
Q ss_pred ecCCC
Q 003420 229 LSGAT 233 (821)
Q Consensus 229 l~~~~ 233 (821)
+.+|+
T Consensus 180 iqgnr 184 (264)
T KOG0617|consen 180 IQGNR 184 (264)
T ss_pred cccce
Confidence 44443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=8.1e-16 Score=135.11 Aligned_cols=157 Identities=20% Similarity=0.322 Sum_probs=142.2
Q ss_pred cCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCC
Q 003420 97 RMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEM 176 (821)
Q Consensus 97 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l 176 (821)
++.+++.|.++.|.++.+|..+..+.+ |++|++..|++...+.+++.+++|+.|++.- +.+..+|..+ +.+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~n-------levln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgf-gs~ 101 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKN-------LEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGF-GSF 101 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhh-------hhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCcccc-CCC
Confidence 577888999999999999999999999 9999999999999999999999999999987 5678899886 999
Q ss_pred CCccEEEecCCCCCc--CcC-cCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCCCCCccChhhccCCCCCCEee
Q 003420 177 TKLQSLNLSGCQMKF--LPS-LSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMID 253 (821)
Q Consensus 177 ~~L~~L~l~~~~i~~--lp~-l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 253 (821)
+.|++||+.+|++.. +|. |..++.|+.|++++|.+.-.-|+++++++||.|.+..|. +-.+| ..++.++.|++|+
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lp-keig~lt~lrelh 179 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLP-KEIGDLTRLRELH 179 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCc-HHHHHHHHHHHHh
Confidence 999999999998875 888 999999999999999876555569999999999999987 66777 6899999999999
Q ss_pred ccCcCCcCCCC
Q 003420 254 LSRTQIKRLPK 264 (821)
Q Consensus 254 l~~~~l~~l~~ 264 (821)
+.+|.++.+|+
T Consensus 180 iqgnrl~vlpp 190 (264)
T KOG0617|consen 180 IQGNRLTVLPP 190 (264)
T ss_pred cccceeeecCh
Confidence 99999999876
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.33 E-value=2.2e-13 Score=145.01 Aligned_cols=174 Identities=19% Similarity=0.197 Sum_probs=93.3
Q ss_pred EEEecCCCccccccHHHHhcCcCCcEEEeecCCC-----CcccccccccccCCCCCCCccEEEcCCCCCCCCc-------
Q 003420 78 TLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGF-----KSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI------- 145 (821)
Q Consensus 78 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-----~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~------- 145 (821)
.|+|..+.+.+.--...|..+++|++|++.++.+ ..++..+...+. +++++++++.+....
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~-------l~~l~l~~~~~~~~~~~~~~~~ 74 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPS-------LKELCLSLNETGRIPRGLQSLL 74 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCC-------ceEEeccccccCCcchHHHHHH
Confidence 3556666665444445566777788888888877 234444555555 777777776654211
Q ss_pred ccccCCCCccEEeccCCcCCCcCchHhhhCCCC---ccEEEecCCCCCc-----CcC-cCCC-CcccEEEccCCCCCCC-
Q 003420 146 GDIELLKKLTVLEISGANSVQKIPDKLLDEMTK---LQSLNLSGCQMKF-----LPS-LSKL-FNLRFLILRDCSSLQK- 214 (821)
Q Consensus 146 ~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~---L~~L~l~~~~i~~-----lp~-l~~l-~~L~~L~l~~~~~~~~- 214 (821)
..+..+++|+.|++++|......+..+ ..+.+ |++|++++|.+.+ +.. +..+ ++|+.|++++|.+...
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 234556677777777654433333322 33333 7777777776652 222 4444 6666666666655421
Q ss_pred ---Ccc-cccCCcccEEeecCCCCCCc----cChhhccCCCCCCEeeccCcCCc
Q 003420 215 ---LPR-INELVRLEIIDLSGATSLTF----FPEQDLSKHQHLQMIDLSRTQIK 260 (821)
Q Consensus 215 ---l~~-l~~l~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~l~ 260 (821)
+.. +..+.+|+.|++++|...+. ++ ..+..+++|++|++++|.++
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALA-EGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHH-HHHHhCCCCCEEeccCCccC
Confidence 111 34445566666655542111 11 12333445555555555544
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.23 E-value=1.3e-12 Score=139.03 Aligned_cols=149 Identities=19% Similarity=0.160 Sum_probs=79.4
Q ss_pred EEEeecCCC--CcccccccccccCCCCCCCccEEEcCCCCCCCC-----cccccCCCCccEEeccCCcCCCcCc------
Q 003420 103 ALAIFNSGF--KSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNG-----IGDIELLKKLTVLEISGANSVQKIP------ 169 (821)
Q Consensus 103 ~L~l~~~~~--~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-----~~~i~~l~~L~~L~l~~~~~~~~lp------ 169 (821)
.|+|.++.+ ......+..+.. |++|+++++.+... ...+...++|++++++++.. +..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~-------L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~-~~~~~~~~~~ 73 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLC-------LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET-GRIPRGLQSL 73 (319)
T ss_pred ccccccCcccccchHHHHHHHhh-------ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc-CCcchHHHHH
Confidence 355555555 333444555666 88888888776432 12455666778887776433 2111
Q ss_pred hHhhhCCCCccEEEecCCCCCc-CcC-cCCC---CcccEEEccCCCCCCC----Ccc-cccC-CcccEEeecCCCCCC--
Q 003420 170 DKLLDEMTKLQSLNLSGCQMKF-LPS-LSKL---FNLRFLILRDCSSLQK----LPR-INEL-VRLEIIDLSGATSLT-- 236 (821)
Q Consensus 170 ~~~~~~l~~L~~L~l~~~~i~~-lp~-l~~l---~~L~~L~l~~~~~~~~----l~~-l~~l-~~L~~L~l~~~~~~~-- 236 (821)
...+..+++|++|++++|.+.. .+. +..+ ++|++|++++|.+... +.. +..+ ++|+.|++++|....
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 1223567777777777776653 222 3333 3377777777654421 111 3344 566666666665221
Q ss_pred --ccChhhccCCCCCCEeeccCcCCc
Q 003420 237 --FFPEQDLSKHQHLQMIDLSRTQIK 260 (821)
Q Consensus 237 --~~~~~~l~~l~~L~~L~l~~~~l~ 260 (821)
.+. ..+..+++|++|++++|.++
T Consensus 154 ~~~~~-~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 154 CEALA-KALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHH-HHHHhCCCcCEEECcCCCCc
Confidence 111 23444555666666665554
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.22 E-value=7.8e-12 Score=145.49 Aligned_cols=206 Identities=22% Similarity=0.329 Sum_probs=133.7
Q ss_pred hhhhccceeccCceeeeeccccccccC--CCCccccccccccceeccccccccccceecccCcceeecCCCC---CCcee
Q 003420 3 LIDRRMLKIQEDNNVVAEGAALEMIDC--LPGFLGTSRLGLAGVVNEEDQRIALGRITQIDGMIKTICDPKK---WDEVS 77 (821)
Q Consensus 3 wia~g~i~~~~~~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~l~ 77 (821)
|||||||.+ .+.++.+++.+..|+.. .++.....+.. .-..-+.+||.+++++-... ....+
T Consensus 437 WiaEGfi~~-~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~------------~~~~~~kmHDvvRe~al~ias~~~~~~e 503 (889)
T KOG4658|consen 437 WIAEGFIDP-LDGGETAEDVGYDYIEELVRASLLIEERDE------------GRKETVKMHDVVREMALWIASDFGKQEE 503 (889)
T ss_pred HHhccCcCc-cccccchhcchHHHHHHHHHHHHHhhcccc------------cceeEEEeeHHHHHHHHHHhcccccccc
Confidence 999999977 33478888999899887 55554432211 00011222333332211100 00011
Q ss_pred EEEecC-CCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCC--CCCCc-ccccCCCC
Q 003420 78 TLLIDG-DRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCN--LLNGI-GDIELLKK 153 (821)
Q Consensus 78 ~L~l~~-n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~-~~i~~l~~ 153 (821)
...... .... .++. .......|...+.+|.+..++.+..+- . |++|-+.+|. +.... ..|..++.
T Consensus 504 ~~iv~~~~~~~-~~~~--~~~~~~~rr~s~~~~~~~~~~~~~~~~-~-------L~tLll~~n~~~l~~is~~ff~~m~~ 572 (889)
T KOG4658|consen 504 NQIVSDGVGLS-EIPQ--VKSWNSVRRMSLMNNKIEHIAGSSENP-K-------LRTLLLQRNSDWLLEISGEFFRSLPL 572 (889)
T ss_pred ceEEECCcCcc-cccc--ccchhheeEEEEeccchhhccCCCCCC-c-------cceEEEeecchhhhhcCHHHHhhCcc
Confidence 111111 1111 1222 123456677777777766555543332 4 7777777775 33322 34788999
Q ss_pred ccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCccc-ccCCcccEEeecC
Q 003420 154 LTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLPRI-NELVRLEIIDLSG 231 (821)
Q Consensus 154 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~~l-~~l~~L~~L~l~~ 231 (821)
|++||+++|...+++|..| +++.+||+|+++++.+..+|. ++++++|.+|++..+.....+|.+ ..|++|++|.+..
T Consensus 573 LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 573 LRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 9999999988999999998 999999999999999999999 999999999999988776666774 5599999999876
Q ss_pred CC
Q 003420 232 AT 233 (821)
Q Consensus 232 ~~ 233 (821)
..
T Consensus 652 s~ 653 (889)
T KOG4658|consen 652 SA 653 (889)
T ss_pred cc
Confidence 43
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.4e-09 Score=101.33 Aligned_cols=126 Identities=25% Similarity=0.313 Sum_probs=44.6
Q ss_pred hcCcCCcEEEeecCCCCccccccc-ccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhh
Q 003420 96 ARMKQLHALAIFNSGFKSLDLSSK-TEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLD 174 (821)
Q Consensus 96 ~~l~~L~~L~l~~~~~~~l~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~ 174 (821)
.+..+++.|+|.+|.|..+.. ++ .+.+ |++|++++|.+.. +..+..+++|++|++++ +.+..++..+..
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~-------L~~L~Ls~N~I~~-l~~l~~L~~L~~L~L~~-N~I~~i~~~l~~ 85 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIEN-LGATLDK-------LEVLDLSNNQITK-LEGLPGLPRLKTLDLSN-NRISSISEGLDK 85 (175)
T ss_dssp --------------------S---TT-TT---------EEE-TTS--S---TT----TT--EEE--S-S---S-CHHHHH
T ss_pred ccccccccccccccccccccc-hhhhhcC-------CCEEECCCCCCcc-ccCccChhhhhhcccCC-CCCCccccchHH
Confidence 344566777777777766543 33 4555 7777777777764 34566778888888886 456667655545
Q ss_pred CCCCccEEEecCCCCCcCcC---cCCCCcccEEEccCCCCCCCCcc----cccCCcccEEeecC
Q 003420 175 EMTKLQSLNLSGCQMKFLPS---LSKLFNLRFLILRDCSSLQKLPR----INELVRLEIIDLSG 231 (821)
Q Consensus 175 ~l~~L~~L~l~~~~i~~lp~---l~~l~~L~~L~l~~~~~~~~l~~----l~~l~~L~~L~l~~ 231 (821)
.+++|++|++++|+|.++.. +..+++|+.|++.+|.....-.. +..+++|+.||-..
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 67888888888888776544 66778888888887765432110 46666777766543
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=2.4e-09 Score=117.34 Aligned_cols=192 Identities=25% Similarity=0.355 Sum_probs=157.0
Q ss_pred EEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccc-cCCCCCCCccEEEcCCCCCCCCcccccCCCCccE
Q 003420 78 TLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEK-KSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTV 156 (821)
Q Consensus 78 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~ 156 (821)
.+....+.+...+. .....+.++.|++.++.+..++....... + |+.|++++|++...+..++.+++|+.
T Consensus 97 ~l~~~~~~~~~~~~--~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~n-------L~~L~l~~N~i~~l~~~~~~l~~L~~ 167 (394)
T COG4886 97 SLDLNLNRLRSNIS--ELLELTNLTSLDLDNNNITDIPPLIGLLKSN-------LKELDLSDNKIESLPSPLRNLPNLKN 167 (394)
T ss_pred eeeccccccccCch--hhhcccceeEEecCCcccccCccccccchhh-------cccccccccchhhhhhhhhccccccc
Confidence 57777777632222 23456889999999999999998888885 8 99999999999876678899999999
Q ss_pred EeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCCCC
Q 003420 157 LEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGATSL 235 (821)
Q Consensus 157 L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 235 (821)
|++++ +.+..+|... +..++|+.|++++|.+..+|. +....+|++|.+++|........+..+.++..+.+.+++ +
T Consensus 168 L~l~~-N~l~~l~~~~-~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~ 244 (394)
T COG4886 168 LDLSF-NDLSDLPKLL-SNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-L 244 (394)
T ss_pred cccCC-chhhhhhhhh-hhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-e
Confidence 99998 5788888764 489999999999999999998 678888999999998756666668888888888877766 5
Q ss_pred CccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCcccc
Q 003420 236 TFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRF 282 (821)
Q Consensus 236 ~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l 282 (821)
..++ ..++.+.+++.|++++|.++.++.++.+.+++.++++++...
T Consensus 245 ~~~~-~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 245 EDLP-ESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred eecc-chhccccccceeccccccccccccccccCccCEEeccCcccc
Confidence 5544 678889999999999999999888888888888888776543
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=8.5e-10 Score=112.18 Aligned_cols=187 Identities=17% Similarity=0.208 Sum_probs=99.2
Q ss_pred CCCceeEEEecCCCccccccH-HHHhcCcCCcEEEeecCCCCc---ccccccccccCCCCCCCccEEEcCCCCCCCCccc
Q 003420 72 KWDEVSTLLIDGDRLRLEVDE-GFLARMKQLHALAIFNSGFKS---LDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGD 147 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~---l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 147 (821)
++++|+.+.+...... ..+. +....+++++.|||+.|-+.. +-.....+++ |+.|+++.|.+.....+
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~-------Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPS-------LENLNLSSNRLSNFISS 190 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhccc-------chhcccccccccCCccc
Confidence 4566666666665543 2221 344566666666666666522 2222333444 66666666665543321
Q ss_pred --ccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCc-C-cCCCCcccEEEccCCCCCC--CCcccccC
Q 003420 148 --IELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLP-S-LSKLFNLRFLILRDCSSLQ--KLPRINEL 221 (821)
Q Consensus 148 --i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp-~-l~~l~~L~~L~l~~~~~~~--~l~~l~~l 221 (821)
-..+++|+.|.+++|+...+--..+...+++|+.|.+.+|....+. . ...+..|+.|++++|.+.. .++..+.+
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccc
Confidence 1245666666666665443322333455666666666666322111 1 4445566666666665443 22335666
Q ss_pred CcccEEeecCCCCCCccChhh------ccCCCCCCEeeccCcCCcCCCCcCC
Q 003420 222 VRLEIIDLSGATSLTFFPEQD------LSKHQHLQMIDLSRTQIKRLPKFGY 267 (821)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~------l~~l~~L~~L~l~~~~l~~l~~~~~ 267 (821)
+.|+.|+++.+. +.++..-. ...+++|++|++..|++.+++++.+
T Consensus 271 ~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~ 321 (505)
T KOG3207|consen 271 PGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH 321 (505)
T ss_pred cchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccch
Confidence 666666666654 33322111 2346677777777777776665433
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=2.2e-09 Score=100.08 Aligned_cols=137 Identities=20% Similarity=0.265 Sum_probs=54.6
Q ss_pred CcceeecCCCCCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCC
Q 003420 62 GMIKTICDPKKWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNL 141 (821)
Q Consensus 62 ~~~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~ 141 (821)
+.|+......+..+++.|++.+|.+. .+. +.-..+.+|++|++++|.+.++.. +..+.. |++|++++|.+
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~-------L~~L~L~~N~I 76 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLEG-LPGLPR-------LKTLDLSNNRI 76 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--TT-----TT---------EEE--SS--
T ss_pred cccccccccccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccccC-ccChhh-------hhhcccCCCCC
Confidence 55555655566678899999999987 443 211257899999999999988864 667777 99999999999
Q ss_pred CCCcccc-cCCCCccEEeccCCcCCCcCch-HhhhCCCCccEEEecCCCCCcCcC-----cCCCCcccEEEccCC
Q 003420 142 LNGIGDI-ELLKKLTVLEISGANSVQKIPD-KLLDEMTKLQSLNLSGCQMKFLPS-----LSKLFNLRFLILRDC 209 (821)
Q Consensus 142 ~~~~~~i-~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~i~~lp~-----l~~l~~L~~L~l~~~ 209 (821)
....+.+ ..+++|++|++++|. +..+.. ..++.+++|++|++.+|.++.-+. +..+++|+.||-...
T Consensus 77 ~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 77 SSISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CccccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 8765445 468999999999854 443321 335789999999999999987654 788999999986553
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1e-09 Score=111.61 Aligned_cols=106 Identities=21% Similarity=0.212 Sum_probs=43.6
Q ss_pred cCcCCcEEEeecCCCCcccc--cccccccCCCCCCCccEEEcCCCCCCCCc---ccccCCCCccEEeccCCcCCCcCchH
Q 003420 97 RMKQLHALAIFNSGFKSLDL--SSKTEKKSEPEKLPMKLLVLRSCNLLNGI---GDIELLKKLTVLEISGANSVQKIPDK 171 (821)
Q Consensus 97 ~l~~L~~L~l~~~~~~~l~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~i~~l~~L~~L~l~~~~~~~~lp~~ 171 (821)
++++|+.+.|.+......+. ....|.+ ++.||++.|-+...- .-...+|+|+.|+++.|....-....
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~-------v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPN-------VRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCc-------ceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc
Confidence 34555555555544433331 2333333 555555554433221 12234555555555543322222211
Q ss_pred hhhCCCCccEEEecCCCCCc--CcC-cCCCCcccEEEccCC
Q 003420 172 LLDEMTKLQSLNLSGCQMKF--LPS-LSKLFNLRFLILRDC 209 (821)
Q Consensus 172 ~~~~l~~L~~L~l~~~~i~~--lp~-l~~l~~L~~L~l~~~ 209 (821)
.-..+.+|+.|.++.|+++. +.. +..+++|..|++..|
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 11234445555555554441 222 333444444444444
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.77 E-value=3.4e-10 Score=118.58 Aligned_cols=164 Identities=22% Similarity=0.259 Sum_probs=80.2
Q ss_pred EEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEE
Q 003420 103 ALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSL 182 (821)
Q Consensus 103 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L 182 (821)
..|++.|++..+|..+..+.. |+.+.+..|.+...+..+.++..|++++++. +.+..+|..+ . .--|++|
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~-------Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~l-C-~lpLkvl 148 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVS-------LESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGL-C-DLPLKVL 148 (722)
T ss_pred hhhccccccccCchHHHHHHH-------HHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhh-h-cCcceeE
Confidence 345555555555555555544 5555555555444444555555555555554 3344455443 1 2235555
Q ss_pred EecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcC
Q 003420 183 NLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKR 261 (821)
Q Consensus 183 ~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 261 (821)
-+++|+++.+|. ++....|..|+.+.|.+....+.++.+.+|+.|.+..|+ +..+| ..+..+ .|..||++.|++..
T Consensus 149 i~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp-~El~~L-pLi~lDfScNkis~ 225 (722)
T KOG0532|consen 149 IVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLP-EELCSL-PLIRLDFSCNKISY 225 (722)
T ss_pred EEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCC-HHHhCC-ceeeeecccCceee
Confidence 555555555555 555555555555554433322335555555555555544 44444 233322 34555555555555
Q ss_pred CCC-cCCCCCCceEeecCc
Q 003420 262 LPK-FGYLKRLSRISIEGC 279 (821)
Q Consensus 262 l~~-~~~l~~L~~L~l~~~ 279 (821)
+|- +.+|+.|++|.+++|
T Consensus 226 iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred cchhhhhhhhheeeeeccC
Confidence 553 455555555555443
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.73 E-value=1.9e-08 Score=110.27 Aligned_cols=180 Identities=31% Similarity=0.398 Sum_probs=103.6
Q ss_pred hCCCCccEEEecCCCCCcCcC-cCCCC-cccEEEccCCCCCCCCcccccCCcccEEeecCCCCCCccChhhccCCCCCCE
Q 003420 174 DEMTKLQSLNLSGCQMKFLPS-LSKLF-NLRFLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQM 251 (821)
Q Consensus 174 ~~l~~L~~L~l~~~~i~~lp~-l~~l~-~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 251 (821)
..++.++.|++.++.++++|. ..... +|+.|+++++.+......+..+++|+.|+++.|+ +..++ ...+..++|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~-~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLP-KLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhh-hhhhhhhhhhh
Confidence 345666677777777776666 55553 6777777666533222246666666666666665 55555 23336777777
Q ss_pred eeccCcCCcCCCCc-CCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcCE
Q 003420 252 IDLSRTQIKRLPKF-GYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLPHIAGLKNLEV 330 (821)
Q Consensus 252 L~l~~~~l~~l~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~ 330 (821)
|++++|++..+|.. .....|+++.+. ++........+..+.++..
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~----------------------------------~N~~~~~~~~~~~~~~l~~ 236 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLS----------------------------------NNSIIELLSSLSNLKNLSG 236 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhc----------------------------------CCcceecchhhhhcccccc
Confidence 77777777777653 222234444433 3332333334444555555
Q ss_pred EEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCCccccccccEEEeecCCCcCcCCC
Q 003420 331 LDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPK 392 (821)
Q Consensus 331 L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~l~~ 392 (821)
+.+.++.... .+..++.+++++.|++++|.++.++.++.+.+++.|+++++.....++.
T Consensus 237 l~l~~n~~~~---~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 237 LELSNNKLED---LPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccCCceeee---ccchhccccccceeccccccccccccccccCccCEEeccCccccccchh
Confidence 5555544222 2455556666777777777776666666666777777776665554443
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.67 E-value=1.1e-09 Score=114.94 Aligned_cols=145 Identities=23% Similarity=0.362 Sum_probs=69.7
Q ss_pred ceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCc
Q 003420 75 EVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKL 154 (821)
Q Consensus 75 ~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L 154 (821)
.|+.+.++.|.+. .++.. ..++..|++++++.|++..+|..+..+. |++|.++.|+++..+..++..++|
T Consensus 99 ~Le~liLy~n~~r-~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp--------Lkvli~sNNkl~~lp~~ig~~~tl 168 (722)
T KOG0532|consen 99 SLESLILYHNCIR-TIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP--------LKVLIVSNNKLTSLPEEIGLLPTL 168 (722)
T ss_pred HHHHHHHHhccce-ecchh-hhhhhHHHHhhhccchhhcCChhhhcCc--------ceeEEEecCccccCCcccccchhH
Confidence 4444555555443 44433 2344555555555555555555444443 555555555555444455555555
Q ss_pred cEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCC
Q 003420 155 TVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGA 232 (821)
Q Consensus 155 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~ 232 (821)
..|+.+. +.+..+|+.+ +.+..|+.|++..|++.++|. +..+ .|..|+++.|+ ...+|. +.+|.+|++|.+.+|
T Consensus 169 ~~ld~s~-nei~slpsql-~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNk-is~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 169 AHLDVSK-NEIQSLPSQL-GYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred HHhhhhh-hhhhhchHHh-hhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCc-eeecchhhhhhhhheeeeeccC
Confidence 5555554 2344455443 455555555555555555554 4422 34445555443 223333 444555555555444
Q ss_pred C
Q 003420 233 T 233 (821)
Q Consensus 233 ~ 233 (821)
.
T Consensus 245 P 245 (722)
T KOG0532|consen 245 P 245 (722)
T ss_pred C
Confidence 3
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.66 E-value=4.5e-09 Score=101.43 Aligned_cols=125 Identities=24% Similarity=0.282 Sum_probs=67.8
Q ss_pred CCCcEEEecCCCCCCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC-ccccccccEEE
Q 003420 303 VSLSELHLRDCPTLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP-LSNLHRLRKLF 380 (821)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~ 380 (821)
..|+++++++|. +..+. +..-.+.++.|++++|.+.. .+.+..+++|+.|++++|.++.+.. -..+.+.+.|.
T Consensus 284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~----v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRT----VQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccc-hhhhhhhhhhccceeEEeccccceee----ehhhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 345666666653 22222 44445566666666666443 1224555666666666666655544 34455666666
Q ss_pred eecCCCcCcCCCCCCCCCcCEEeccCCC--CCCcCCCCCCCCCCCEEEeeCCCCC
Q 003420 381 LKNCELLEELPKMNGLENLEVLDLSGCS--KLVEFPKLKDFPKLELLDISNTGIK 433 (821)
Q Consensus 381 l~~~~~~~~l~~~~~l~~L~~L~l~~c~--~l~~i~~l~~l~~L~~L~l~~~~~~ 433 (821)
+++|. ++.+..++.+-+|+.||+++|+ .++.+-.++++|.|+.+.+.+|++.
T Consensus 359 La~N~-iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNK-IETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhh-HhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 66653 4444445555666666666653 1222222566666666666666664
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.61 E-value=1.8e-09 Score=106.90 Aligned_cols=132 Identities=20% Similarity=0.185 Sum_probs=83.0
Q ss_pred CCCCCcEEEecCCCCCCCCC-----CCCCCCCcCEEEecCCCCCCcc--cChhhhcCCCCCcEEEecCCCCCCCC-----
Q 003420 301 FPVSLSELHLRDCPTLKRLP-----HIAGLKNLEVLDVSGTSDSKFA--ISDESFHDLDYLRELNLSNTKLKSLP----- 368 (821)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~l~----- 368 (821)
..+.|+++....|..-..-- .++..+.|+.+.+..|.+..-+ .....+..+++|+.|++..|.++.--
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 34455555555543222111 3455567777777777654411 23456777888888888888776221
Q ss_pred C-ccccccccEEEeecCCCcCcCCC------CCCCCCcCEEeccCCCCCCcCCC-----CCCCCCCCEEEeeCCCC
Q 003420 369 P-LSNLHRLRKLFLKNCELLEELPK------MNGLENLEVLDLSGCSKLVEFPK-----LKDFPKLELLDISNTGI 432 (821)
Q Consensus 369 ~-~~~l~~L~~L~l~~~~~~~~l~~------~~~l~~L~~L~l~~c~~l~~i~~-----l~~l~~L~~L~l~~~~~ 432 (821)
. +..+++|+.|++++|.+...-.. -...|+|++|.+.+|....+... ....|.|+.|++++|.+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1 66777888888888875443211 23478888888888765544222 45578888888888887
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.58 E-value=1.8e-07 Score=97.79 Aligned_cols=119 Identities=17% Similarity=0.189 Sum_probs=74.8
Q ss_pred hcccccEEEEcCCCCchhhhHHhhcCCcEEEEecCCCCcccchhchhhhcCCceEEEecccCceecccccchhhhhcCcc
Q 003420 623 RKAAAKFLEIRGLKSICDGLKEILNNTEYISWVEPKPMKSLSDLDAGSLVKMEGLWIARCIEMESIFGEEKDIELARNLK 702 (821)
Q Consensus 623 ~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~L~ 702 (821)
....++.|+|++| .+.+++ ...++|++|.+.+|.+++.+|+... ++|+.|.|.+|.++..+|. +|+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~sLP~---------sLe 115 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP-VLPNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEISGLPE---------SVR 115 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC-CCCCCCcEEEccCCCCcccCCchhh---hhhhheEccCccccccccc---------ccc
Confidence 4477889999988 677666 3445799999999999888876443 4789999999988876653 466
Q ss_pred eeeccccccccccccccccccccCCCCceEEecCCC-CCcccccCCCcccccccEEEEeccccc
Q 003420 703 ILWVSNLPKVESLFNHKLQSVKNLENLKHLHLDCCP-RLKCVFASPDQIPKRLEVLEIKFCDSL 765 (821)
Q Consensus 703 ~L~i~~c~~L~~l~~~~~~~l~~~~sL~~L~i~~C~-~L~~~~p~~~~l~~~L~~L~i~~C~~L 765 (821)
.|.+. +..+..+.. .+++|+.|.+.++. ......| ..||++|++|.|.+|..+
T Consensus 116 ~L~L~-~n~~~~L~~-------LPssLk~L~I~~~n~~~~~~lp--~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 116 SLEIK-GSATDSIKN-------VPNGLTSLSINSYNPENQARID--NLISPSLKTLSLTGCSNI 169 (426)
T ss_pred eEEeC-CCCCccccc-------CcchHhheeccccccccccccc--cccCCcccEEEecCCCcc
Confidence 66664 233332322 34455666654322 1111111 345666777777666654
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.57 E-value=1.2e-08 Score=98.49 Aligned_cols=99 Identities=24% Similarity=0.312 Sum_probs=41.4
Q ss_pred CccEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccC
Q 003420 178 KLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSR 256 (821)
Q Consensus 178 ~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 256 (821)
.|+.+|+++|.|+.+.. +.-.++++.|+++.|.+. .+..+..+++|+.|++++|. +..+. .+-.++.++++|.++.
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N~-Ls~~~-Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGNL-LAECV-GWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccch-hHhhh-hhHhhhcCEeeeehhh
Confidence 34444444444444433 344444444444444322 12223444444444444433 33322 2333344444444444
Q ss_pred cCCcCCCCcCCCCCCceEeecCc
Q 003420 257 TQIKRLPKFGYLKRLSRISIEGC 279 (821)
Q Consensus 257 ~~l~~l~~~~~l~~L~~L~l~~~ 279 (821)
|.++.++.+..+-+|..|++++|
T Consensus 362 N~iE~LSGL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 362 NKIETLSGLRKLYSLVNLDLSSN 384 (490)
T ss_pred hhHhhhhhhHhhhhheecccccc
Confidence 44444444444444444444443
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.38 E-value=5.1e-08 Score=106.89 Aligned_cols=103 Identities=23% Similarity=0.232 Sum_probs=47.9
Q ss_pred cCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCC
Q 003420 97 RMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEM 176 (821)
Q Consensus 97 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l 176 (821)
.+..++.+++..|.+..+-..+..+.. |++|++.+|.+......+..+++|++|++++| .++.+.. +..+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~-------l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~--l~~l 139 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKS-------LEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG--LSTL 139 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccc-------eeeeeccccchhhcccchhhhhcchheecccc-ccccccc--hhhc
Confidence 345555555555555443333444444 55566555555442222444555555555542 3333322 2344
Q ss_pred CCccEEEecCCCCCcCcCcCCCCcccEEEccCC
Q 003420 177 TKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDC 209 (821)
Q Consensus 177 ~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~ 209 (821)
..|+.|++.+|.++.+..+..++.|+.+++++|
T Consensus 140 ~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 140 TLLKELNLSGNLISDISGLESLKSLKLLDLSYN 172 (414)
T ss_pred cchhhheeccCcchhccCCccchhhhcccCCcc
Confidence 445555555554444444444444444444444
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.35 E-value=1.8e-08 Score=102.26 Aligned_cols=80 Identities=23% Similarity=0.308 Sum_probs=43.9
Q ss_pred ccEEEcCCCCCCCCc---ccccCCCCccEEeccCCcCCCcCc-hHhhhCCCCccEEEecCC-CCCcC--cC-cCCCCccc
Q 003420 131 MKLLVLRSCNLLNGI---GDIELLKKLTVLEISGANSVQKIP-DKLLDEMTKLQSLNLSGC-QMKFL--PS-LSKLFNLR 202 (821)
Q Consensus 131 L~~L~l~~~~~~~~~---~~i~~l~~L~~L~l~~~~~~~~lp-~~~~~~l~~L~~L~l~~~-~i~~l--p~-l~~l~~L~ 202 (821)
||.|.++++.-.+.- ..-.+++++++|.+.+|..+++.. .++-..+++|++|++..| .+++. .. ...+++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 667777666544322 123556777777777666544322 223345667777776664 34432 12 34556666
Q ss_pred EEEccCCC
Q 003420 203 FLILRDCS 210 (821)
Q Consensus 203 ~L~l~~~~ 210 (821)
+|+++.|.
T Consensus 220 ~lNlSwc~ 227 (483)
T KOG4341|consen 220 YLNLSWCP 227 (483)
T ss_pred HhhhccCc
Confidence 66666654
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.32 E-value=1.3e-08 Score=103.08 Aligned_cols=289 Identities=20% Similarity=0.228 Sum_probs=154.7
Q ss_pred CCcEEEeecCCC---CcccccccccccCCCCCCCccEEEcCCCCCCCCc--ccc-cCCCCccEEeccCCcCCCcCch-Hh
Q 003420 100 QLHALAIFNSGF---KSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI--GDI-ELLKKLTVLEISGANSVQKIPD-KL 172 (821)
Q Consensus 100 ~L~~L~l~~~~~---~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~i-~~l~~L~~L~l~~~~~~~~lp~-~~ 172 (821)
.||.|.+.|..- ..+-....++++ +++|.+.+|...+.. .++ ..+++|++|++..|..++...- .+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~Cpn-------IehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPN-------IEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCc-------hhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 477777777653 222233345555 888888887643322 223 4688899999988776665442 35
Q ss_pred hhCCCCccEEEecCCC-CCc--CcC-cCCCCcccEEEccCCCCCCC--Cccc-ccCCcccEEeecCCCCCCccChh-hcc
Q 003420 173 LDEMTKLQSLNLSGCQ-MKF--LPS-LSKLFNLRFLILRDCSSLQK--LPRI-NELVRLEIIDLSGATSLTFFPEQ-DLS 244 (821)
Q Consensus 173 ~~~l~~L~~L~l~~~~-i~~--lp~-l~~l~~L~~L~l~~~~~~~~--l~~l-~~l~~L~~L~l~~~~~~~~~~~~-~l~ 244 (821)
...+++|++|+++.|. +++ +.. ...+++++.+...+|..... +-.+ ..+..+..+++..|..+++...- .-.
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 5678899999998873 443 333 66677777777777643221 1111 44455666666666555543311 122
Q ss_pred CCCCCCEeeccCc-CCcCCC--C-cCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC
Q 003420 245 KHQHLQMIDLSRT-QIKRLP--K-FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP 320 (821)
Q Consensus 245 ~l~~L~~L~l~~~-~l~~l~--~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 320 (821)
.+..|+.|+.+++ .++..+ . ..+.++|+.+.+.+|+.+...... .
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft-------------------------------~ 340 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT-------------------------------M 340 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh-------------------------------h
Confidence 3566777776653 222211 1 233445555555555433221100 0
Q ss_pred CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCC-CCC--CCC----ccccccccEEEeecCCCcCcCC--
Q 003420 321 HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTK-LKS--LPP----LSNLHRLRKLFLKNCELLEELP-- 391 (821)
Q Consensus 321 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~--l~~----~~~l~~L~~L~l~~~~~~~~l~-- 391 (821)
--.++++|+.+++.++.......+...-.+++.|+++.++++. +++ +.. -.....|..+.+++|+.+++-.
T Consensus 341 l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 341 LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence 1223445555555555433311122333345555555555542 221 111 2345667777777777655432
Q ss_pred CCCCCCCcCEEeccCCCCCCcCCC---CCCCCCCCEEE
Q 003420 392 KMNGLENLEVLDLSGCSKLVEFPK---LKDFPKLELLD 426 (821)
Q Consensus 392 ~~~~l~~L~~L~l~~c~~l~~i~~---l~~l~~L~~L~ 426 (821)
.+..+++|+.+++.+|.....-+. -.++|++++..
T Consensus 421 ~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 421 HLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred HHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 256677777777777765555443 44566666544
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.32 E-value=1.6e-06 Score=90.87 Aligned_cols=139 Identities=14% Similarity=0.170 Sum_probs=91.2
Q ss_pred cccccEEEEcCCCCchhhhHHhhcCCcEEEEecCCCCcccchhchhhhcCCceEEEecccCceecccccchhhhhcCcce
Q 003420 624 KAAAKFLEIRGLKSICDGLKEILNNTEYISWVEPKPMKSLSDLDAGSLVKMEGLWIARCIEMESIFGEEKDIELARNLKI 703 (821)
Q Consensus 624 ~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~L~~ 703 (821)
+.+|+.|.+++|..+...+....++|++|.+++|.++..+| .+|+.|.+. |.....+.. ..++|+.
T Consensus 71 P~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP-------~sLe~L~L~-~n~~~~L~~------LPssLk~ 136 (426)
T PRK15386 71 PNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP-------ESVRSLEIK-GSATDSIKN------VPNGLTS 136 (426)
T ss_pred CCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc-------cccceEEeC-CCCCccccc------CcchHhh
Confidence 45688889988888877776667889999999998877664 357777775 333332221 2246778
Q ss_pred eeccccccc--cccccccccccccCCCCceEEecCCCCCcccccCCCcccccccEEEEeccc--cccccccccccccccc
Q 003420 704 LWVSNLPKV--ESLFNHKLQSVKNLENLKHLHLDCCPRLKCVFASPDQIPKRLEVLEIKFCD--SLETVYKHSGDEQDEC 779 (821)
Q Consensus 704 L~i~~c~~L--~~l~~~~~~~l~~~~sL~~L~i~~C~~L~~~~p~~~~l~~~L~~L~i~~C~--~L~~i~~~~~~~~~~~ 779 (821)
|.+.+.... ..++ ...+++|++|.|.+|..+. +| +.+|.+|+.|.+..+. .++ ++. +
T Consensus 137 L~I~~~n~~~~~~lp------~~LPsSLk~L~Is~c~~i~--LP--~~LP~SLk~L~ls~n~~~sLe-I~~------~-- 197 (426)
T PRK15386 137 LSINSYNPENQARID------NLISPSLKTLSLTGCSNII--LP--EKLPESLQSITLHIEQKTTWN-ISF------E-- 197 (426)
T ss_pred eeccccccccccccc------cccCCcccEEEecCCCccc--Cc--ccccccCcEEEeccccccccc-Ccc------c--
Confidence 887543211 1111 1256899999999999664 44 5688999999997643 222 210 0
Q ss_pred cC-CcccEEecccccccc
Q 003420 780 AL-STLKKLFLFKLPALT 796 (821)
Q Consensus 780 ~l-~~L~~L~l~~cp~L~ 796 (821)
.+ +++ .|.+.+|.++.
T Consensus 198 sLP~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 198 GFPDGL-DIDLQNSVLLS 214 (426)
T ss_pred cccccc-EechhhhcccC
Confidence 12 556 78888886654
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3.3e-08 Score=95.65 Aligned_cols=173 Identities=25% Similarity=0.204 Sum_probs=93.5
Q ss_pred CCcEEEeecCCC--CcccccccccccCCCCCCCccEEEcCCCCCCCCc-ccccCCCCccEEeccCCcCCCcCch-HhhhC
Q 003420 100 QLHALAIFNSGF--KSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIELLKKLTVLEISGANSVQKIPD-KLLDE 175 (821)
Q Consensus 100 ~L~~L~l~~~~~--~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~~ 175 (821)
.|+++||+...+ ..+...+..|.. |+.|.+.++.+.+.+ ..+.+-.+|+.|++++|+.++.... -++.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~k-------Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s 258 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSK-------LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS 258 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHh-------hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHh
Confidence 366666666665 344445555666 666666666655444 3456666677777766665554432 34566
Q ss_pred CCCccEEEecCCCCCc--CcC-cC-CCCcccEEEccCCCCCC---CCcc-cccCCcccEEeecCCCCCCccChhhccCCC
Q 003420 176 MTKLQSLNLSGCQMKF--LPS-LS-KLFNLRFLILRDCSSLQ---KLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQ 247 (821)
Q Consensus 176 l~~L~~L~l~~~~i~~--lp~-l~-~l~~L~~L~l~~~~~~~---~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 247 (821)
|+.|..|+++.|.+.. +.. +. --.+|..|+++++...- .+.. ..++++|.+||+++|..++.--...+.+++
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 6777777776665432 111 11 11456666666653211 1112 256666667776666555443334556666
Q ss_pred CCCEeeccCcCCcC---CCCcCCCCCCceEeecCc
Q 003420 248 HLQMIDLSRTQIKR---LPKFGYLKRLSRISIEGC 279 (821)
Q Consensus 248 ~L~~L~l~~~~l~~---l~~~~~l~~L~~L~l~~~ 279 (821)
.|++|.+++|+.-. +-.+...|.|.+|++.||
T Consensus 339 ~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 339 YLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 66666666654321 223455555555555554
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.29 E-value=5.8e-07 Score=68.56 Aligned_cols=56 Identities=30% Similarity=0.548 Sum_probs=27.2
Q ss_pred CccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCC
Q 003420 153 KLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDC 209 (821)
Q Consensus 153 ~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~ 209 (821)
+|++|++++| .+..+|.+.|..+++|++|++++|.++.++. |..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444442 3444444444555555555555555554443 455555555555544
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.28 E-value=1.3e-07 Score=103.83 Aligned_cols=123 Identities=20% Similarity=0.311 Sum_probs=62.4
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCC
Q 003420 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKK 153 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~ 153 (821)
..++.+++..|.+.. + .+....+++|..|++.+|.+..+...+..+.+ |++|++++|.+.. +..+..++.
T Consensus 72 ~~l~~l~l~~n~i~~-~-~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~-------L~~L~ls~N~I~~-i~~l~~l~~ 141 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-I-LNHLSKLKSLEALDLYDNKIEKIENLLSSLVN-------LQVLDLSFNKITK-LEGLSTLTL 141 (414)
T ss_pred HhHHhhccchhhhhh-h-hcccccccceeeeeccccchhhcccchhhhhc-------chheecccccccc-ccchhhccc
Confidence 344444455554431 0 11133455566666666665555544455555 6666666555543 334444555
Q ss_pred ccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCC
Q 003420 154 LTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDC 209 (821)
Q Consensus 154 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~ 209 (821)
|+.|++.+| .+..+.. +..+..|+.+++++|.+..+.. ...+.+++.+++.+|
T Consensus 142 L~~L~l~~N-~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 142 LKELNLSGN-LISDISG--LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred hhhheeccC-cchhccC--CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 666666552 3444432 2345556666666665555554 355555555555554
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4.1e-08 Score=95.03 Aligned_cols=177 Identities=17% Similarity=0.177 Sum_probs=132.9
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCC-CcccccccccccCCCCCCCccEEEcCCCCCCCCc---cccc
Q 003420 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGF-KSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI---GDIE 149 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~i~ 149 (821)
..+++|+++...++..-...++.++.+|+.|.+-++.+ ..+...+.+-.+ |+.|+++.++....- --+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~-------L~~lnlsm~sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSN-------LVRLNLSMCSGFTENALQLLLS 257 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccc-------ceeeccccccccchhHHHHHHH
Confidence 45889999999887666677889999999999999998 667777888888 999999998654332 2467
Q ss_pred CCCCccEEeccCCcCCCcCchHhhhC-CCCccEEEecCCC----CCcCcC-cCCCCcccEEEccCCCCCCC--CcccccC
Q 003420 150 LLKKLTVLEISGANSVQKIPDKLLDE-MTKLQSLNLSGCQ----MKFLPS-LSKLFNLRFLILRDCSSLQK--LPRINEL 221 (821)
Q Consensus 150 ~l~~L~~L~l~~~~~~~~lp~~~~~~-l~~L~~L~l~~~~----i~~lp~-l~~l~~L~~L~l~~~~~~~~--l~~l~~l 221 (821)
.+..|..|+++.|......-..+... -.+|..|+++|+. .+++.. ...+++|.+|++++|..... +..+.++
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf 337 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF 337 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc
Confidence 89999999999886654432211122 3678899999983 334555 78899999999999876553 2236889
Q ss_pred CcccEEeecCCCCCCccChhhccCCCCCCEeeccCc
Q 003420 222 VRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRT 257 (821)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 257 (821)
+.|++|.++.|-.+.--..-.+...++|.+|++.++
T Consensus 338 ~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred chheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 999999999986432111135677899999998775
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=4.3e-07 Score=88.08 Aligned_cols=89 Identities=18% Similarity=0.202 Sum_probs=60.1
Q ss_pred hhhCCCCccEEEecCCCCCcCcC----cCCCCcccEEEccCCCCCCCCccc-ccCCcccEEeecCCCCCCccChhhccCC
Q 003420 172 LLDEMTKLQSLNLSGCQMKFLPS----LSKLFNLRFLILRDCSSLQKLPRI-NELVRLEIIDLSGATSLTFFPEQDLSKH 246 (821)
Q Consensus 172 ~~~~l~~L~~L~l~~~~i~~lp~----l~~l~~L~~L~l~~~~~~~~l~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~~l 246 (821)
+-..++.++.||+.+|.++++.. +.+++.|+.|+++.|.....+..+ ....+|+.|.+.+...-..-....+..+
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 33467888888888888887543 678888888888888765555444 4667788888877542222122456667
Q ss_pred CCCCEeeccCcCCc
Q 003420 247 QHLQMIDLSRTQIK 260 (821)
Q Consensus 247 ~~L~~L~l~~~~l~ 260 (821)
+.++.|+++.|.+.
T Consensus 146 P~vtelHmS~N~~r 159 (418)
T KOG2982|consen 146 PKVTELHMSDNSLR 159 (418)
T ss_pred hhhhhhhhccchhh
Confidence 77777777776444
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.18 E-value=4.3e-06 Score=96.06 Aligned_cols=109 Identities=22% Similarity=0.345 Sum_probs=77.3
Q ss_pred CCcEEEeecCCC-CcccccccccccCCCCCCCccEEEcCCCCCCCCcc-cccCCCCccEEeccCCcCCCcCchHhhhCCC
Q 003420 100 QLHALAIFNSGF-KSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIELLKKLTVLEISGANSVQKIPDKLLDEMT 177 (821)
Q Consensus 100 ~L~~L~l~~~~~-~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~ 177 (821)
.++.|+|++|.+ +.+|..+..+++ |++|++++|.+.+.++ .++.+++|++|++++|+..+.+|..+ ++++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~-------L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~ 490 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRH-------LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLT 490 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCC-------CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCC
Confidence 367777887777 567777777777 8888888887775553 57778888888888776666777665 7788
Q ss_pred CccEEEecCCCCC-cCcC-cCC-CCcccEEEccCCCCCCCCc
Q 003420 178 KLQSLNLSGCQMK-FLPS-LSK-LFNLRFLILRDCSSLQKLP 216 (821)
Q Consensus 178 ~L~~L~l~~~~i~-~lp~-l~~-l~~L~~L~l~~~~~~~~l~ 216 (821)
+|++|++++|.++ .+|. ++. ..++..+++.+|......|
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 8888888888776 3666 544 3466677777765444333
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.18 E-value=1.3e-06 Score=66.62 Aligned_cols=59 Identities=24% Similarity=0.359 Sum_probs=43.5
Q ss_pred CccEEEcCCCCCCCCc-ccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCC
Q 003420 130 PMKLLVLRSCNLLNGI-GDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQM 189 (821)
Q Consensus 130 ~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i 189 (821)
+|++|++++|++...+ ..+.++++|++|++++ +.+..+++..|..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4777777777776655 3567788888888886 456777777778888888888888764
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.15 E-value=8.7e-07 Score=88.28 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=16.9
Q ss_pred CCCCCEeeccCcCCcCC------CCcCCCCCCceEeecCcc
Q 003420 246 HQHLQMIDLSRTQIKRL------PKFGYLKRLSRISIEGCK 280 (821)
Q Consensus 246 l~~L~~L~l~~~~l~~l------~~~~~l~~L~~L~l~~~~ 280 (821)
.++|+.|.+.+|.++.= ..+...+.|..|++.+|.
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 44555555555555420 113335555555555554
No 49
>PLN03150 hypothetical protein; Provisional
Probab=98.01 E-value=1.5e-05 Score=91.70 Aligned_cols=105 Identities=21% Similarity=0.344 Sum_probs=72.8
Q ss_pred CccEEEecCCCCCc-CcC-cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeec
Q 003420 178 KLQSLNLSGCQMKF-LPS-LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDL 254 (821)
Q Consensus 178 ~L~~L~l~~~~i~~-lp~-l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 254 (821)
.++.|++++|.+.. +|. ++.+++|+.|++++|.+.+.+|. +..+++|+.|++++|+..+.+| ..++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-hHHhcCCCCCEEEC
Confidence 36677777777764 565 77778888888888777777775 7777888888888777445555 67777888888888
Q ss_pred cCcCCcC-CCC-cCC-CCCCceEeecCccccc
Q 003420 255 SRTQIKR-LPK-FGY-LKRLSRISIEGCKRFH 283 (821)
Q Consensus 255 ~~~~l~~-l~~-~~~-l~~L~~L~l~~~~~l~ 283 (821)
++|.+.+ +|. +.. ..++..+++.+|..+.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCcccc
Confidence 8877774 554 332 2355667777665443
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=6.5e-06 Score=80.13 Aligned_cols=60 Identities=10% Similarity=0.113 Sum_probs=29.6
Q ss_pred CCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCC---cCCCCCCceEeecCcc
Q 003420 221 LVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK---FGYLKRLSRISIEGCK 280 (821)
Q Consensus 221 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~---~~~l~~L~~L~l~~~~ 280 (821)
++++..+.+..|..-+.-.......++.+-.|+++.++|....+ +..++.|..|.+..+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence 34444555554431111111334445566666677766665433 4555555555555443
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.81 E-value=1.1e-05 Score=92.36 Aligned_cols=133 Identities=25% Similarity=0.278 Sum_probs=95.8
Q ss_pred CCccEEEcCCCCCCC--Cccccc-CCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcCcCCCCcccEEE
Q 003420 129 LPMKLLVLRSCNLLN--GIGDIE-LLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLI 205 (821)
Q Consensus 129 ~~L~~L~l~~~~~~~--~~~~i~-~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~l~~l~~L~~L~ 205 (821)
.+|++|++++..... .+..++ .+|+|+.|.+.|-.....--.....++++|+.||+++++++.+..++.+++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 349999998864322 123444 48999999998744333323345678999999999999999996699999999999
Q ss_pred ccCCCCCC--CCcccccCCcccEEeecCCCCCCcc--Ch---hhccCCCCCCEeeccCcCCcC
Q 003420 206 LRDCSSLQ--KLPRINELVRLEIIDLSGATSLTFF--PE---QDLSKHQHLQMIDLSRTQIKR 261 (821)
Q Consensus 206 l~~~~~~~--~l~~l~~l~~L~~L~l~~~~~~~~~--~~---~~l~~l~~L~~L~l~~~~l~~ 261 (821)
+.+-.+.. .+-++..+++|+.||++........ .. +.-..+++|+.||.+++.+..
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 98866543 3445789999999999986533221 11 122348899999999887774
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.63 E-value=1.6e-06 Score=94.03 Aligned_cols=132 Identities=21% Similarity=0.251 Sum_probs=90.3
Q ss_pred eecCCCCCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCc
Q 003420 66 TICDPKKWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI 145 (821)
Q Consensus 66 ~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 145 (821)
++++...|.+|...+.+.|.+. ..+..+.-++.|++|+|+.|++.++. .+..+.+ |++||+++|.+...+
T Consensus 156 d~~ns~~Wn~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~-------LkhLDlsyN~L~~vp 225 (1096)
T KOG1859|consen 156 DISNSPVWNKLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPK-------LKHLDLSYNCLRHVP 225 (1096)
T ss_pred ccccchhhhhHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhhH-HHHhccc-------ccccccccchhcccc
Confidence 4444456777777888888764 23344566788888888888887776 5777777 888888888777655
Q ss_pred c-cccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC---cCCCCcccEEEccCCCC
Q 003420 146 G-DIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS---LSKLFNLRFLILRDCSS 211 (821)
Q Consensus 146 ~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~---l~~l~~L~~L~l~~~~~ 211 (821)
. +...+. |+.|.+++ |.+..+- ++ .++++|+.||+++|-+.+... ++.+..|+.|++.+|..
T Consensus 226 ~l~~~gc~-L~~L~lrn-N~l~tL~-gi-e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 226 QLSMVGCK-LQLLNLRN-NALTTLR-GI-ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccchhhhh-heeeeecc-cHHHhhh-hH-HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 3 233344 88888876 3454443 33 678888888888887665433 67777788888877743
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=8.2e-05 Score=51.76 Aligned_cols=39 Identities=26% Similarity=0.508 Sum_probs=17.9
Q ss_pred CccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCc
Q 003420 153 KLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLP 193 (821)
Q Consensus 153 ~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp 193 (821)
+|++|++++| .+.++|+.+ ++|++|++|++++|++++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l-~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPEL-SNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHG-TTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCC-CCcccCchH-hCCCCCCEEEecCCCCCCCc
Confidence 4455555542 344444433 45555555555555555443
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=3.7e-05 Score=88.06 Aligned_cols=100 Identities=21% Similarity=0.263 Sum_probs=49.0
Q ss_pred ccEEEcCCCCCCCCc--ccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC---cCCCCcccEEE
Q 003420 131 MKLLVLRSCNLLNGI--GDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS---LSKLFNLRFLI 205 (821)
Q Consensus 131 L~~L~l~~~~~~~~~--~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~---l~~l~~L~~L~ 205 (821)
|+.|.+.+-.+...- .-..++++|+.||++++ .++.+ .++ +++++|++|.+.+=.+..... +..+++|+.||
T Consensus 150 L~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GI-S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD 226 (699)
T KOG3665|consen 150 LRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGI-SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD 226 (699)
T ss_pred cceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHH-hccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence 555555443332211 12344555666666553 33444 233 556666666555554444332 55566666666
Q ss_pred ccCCCCCCCC--cc-----cccCCcccEEeecCCC
Q 003420 206 LRDCSSLQKL--PR-----INELVRLEIIDLSGAT 233 (821)
Q Consensus 206 l~~~~~~~~l--~~-----l~~l~~L~~L~l~~~~ 233 (821)
+|.......- .. -..+++|+.||.++..
T Consensus 227 IS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 227 ISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred ccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 6654322211 11 1346677777777654
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.49 E-value=2.1e-06 Score=93.20 Aligned_cols=154 Identities=19% Similarity=0.169 Sum_probs=97.9
Q ss_pred CCCCCceeEEEecCCCcccccc--------------------HHHHh----------cCcCCcEEEeecCCCCccccccc
Q 003420 70 PKKWDEVSTLLIDGDRLRLEVD--------------------EGFLA----------RMKQLHALAIFNSGFKSLDLSSK 119 (821)
Q Consensus 70 ~~~~~~l~~L~l~~n~~~~~~~--------------------~~~~~----------~l~~L~~L~l~~~~~~~l~~~~~ 119 (821)
...+++||+|.+.++.+..... ..+|. ...+|.+.+.+.|.+..+..++.
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLq 184 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQ 184 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHH
Confidence 3457899999999988642111 01111 12346666666666666666666
Q ss_pred ccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcCcCCCC
Q 003420 120 TEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLF 199 (821)
Q Consensus 120 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~l~~l~ 199 (821)
-+.+ |+.|+|+.|++... ..+..+++|++||+++| .+..+|.--...++ |+.|.+++|.++.+-.+.+++
T Consensus 185 ll~a-------le~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~Lk 254 (1096)
T KOG1859|consen 185 LLPA-------LESLNLSHNKFTKV-DNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLK 254 (1096)
T ss_pred HHHH-------hhhhccchhhhhhh-HHHHhcccccccccccc-hhccccccchhhhh-heeeeecccHHHhhhhHHhhh
Confidence 6666 77777777777653 36677777777777773 45555531112233 777777777777766677777
Q ss_pred cccEEEccCCCCCC--CCcccccCCcccEEeecCCC
Q 003420 200 NLRFLILRDCSSLQ--KLPRINELVRLEIIDLSGAT 233 (821)
Q Consensus 200 ~L~~L~l~~~~~~~--~l~~l~~l~~L~~L~l~~~~ 233 (821)
+|+.|+++.|-+.+ .+..+..+..|+.|.+.||.
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 77777777764433 33345667777777777765
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.47 E-value=0.00022 Score=66.01 Aligned_cols=100 Identities=21% Similarity=0.292 Sum_probs=65.9
Q ss_pred ccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC---cCCCCcccEEEcc
Q 003420 131 MKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS---LSKLFNLRFLILR 207 (821)
Q Consensus 131 L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~---l~~l~~L~~L~l~ 207 (821)
...+|+++|++.. .+.+.+++.|.+|.+.. +.+..+.+.+-.-+++|..|.+.+|++..+.+ +..++.|++|.+-
T Consensus 44 ~d~iDLtdNdl~~-l~~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRK-LDNLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhh-cccCCCccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 5667777776653 35566777777777775 46666666665556778888888877766543 6677778888777
Q ss_pred CCCCCCC----CcccccCCcccEEeecCC
Q 003420 208 DCSSLQK----LPRINELVRLEIIDLSGA 232 (821)
Q Consensus 208 ~~~~~~~----l~~l~~l~~L~~L~l~~~ 232 (821)
+|..... .-.+..+++|+.||+++.
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 7654331 112567777777777653
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.45 E-value=1.3e-05 Score=77.13 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=18.6
Q ss_pred CCCCccEEEecCCCCCc-Cc----C-cCCCCcccEEEccCCC
Q 003420 175 EMTKLQSLNLSGCQMKF-LP----S-LSKLFNLRFLILRDCS 210 (821)
Q Consensus 175 ~l~~L~~L~l~~~~i~~-lp----~-l~~l~~L~~L~l~~~~ 210 (821)
+|++|+..+++.|.+.. .| . +++-++|.+|.+++|.
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 45555555555554432 11 1 5555666666666654
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.25 E-value=0.00062 Score=63.11 Aligned_cols=82 Identities=27% Similarity=0.358 Sum_probs=39.3
Q ss_pred hcCCCCCcEEEecCCCCCCCCC--ccccccccEEEeecCCCc--CcCCCCCCCCCcCEEeccCCCCCCcCCC----CCCC
Q 003420 348 FHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLKNCELL--EELPKMNGLENLEVLDLSGCSKLVEFPK----LKDF 419 (821)
Q Consensus 348 ~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~~--~~l~~~~~l~~L~~L~l~~c~~l~~i~~----l~~l 419 (821)
|..++.|.+|.++.|.++.+.+ -.-+++|+.|.+.+|.+. +++..+..||+|++|.+-+|+....--. +..+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 3344455555555555554444 233444555555554432 2233355555666665555543222211 4456
Q ss_pred CCCCEEEeeC
Q 003420 420 PKLELLDISN 429 (821)
Q Consensus 420 ~~L~~L~l~~ 429 (821)
|+|+.||+..
T Consensus 140 p~l~~LDF~k 149 (233)
T KOG1644|consen 140 PSLRTLDFQK 149 (233)
T ss_pred CcceEeehhh
Confidence 6666666554
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.18 E-value=0.00031 Score=48.84 Aligned_cols=13 Identities=31% Similarity=0.462 Sum_probs=4.9
Q ss_pred ccCCCCccEEecc
Q 003420 148 IELLKKLTVLEIS 160 (821)
Q Consensus 148 i~~l~~L~~L~l~ 160 (821)
++++++|++|+++
T Consensus 20 l~~l~~L~~L~l~ 32 (44)
T PF12799_consen 20 LSNLPNLETLNLS 32 (44)
T ss_dssp GTTCTTSSEEEET
T ss_pred HhCCCCCCEEEec
Confidence 3333333333333
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.03 E-value=6.5e-05 Score=64.80 Aligned_cols=106 Identities=20% Similarity=0.245 Sum_probs=61.6
Q ss_pred cCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccc-cCCCCccEEeccCCcCCCcCchHhhhCCC
Q 003420 99 KQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDI-ELLKKLTVLEISGANSVQKIPDKLLDEMT 177 (821)
Q Consensus 99 ~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i-~~l~~L~~L~l~~~~~~~~lp~~~~~~l~ 177 (821)
..+-.++|+.+.+.++++....+.. -.+|+..++++|.+...++.+ ..++.++.|++.. +.+.++|.+ +..++
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~----~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE-~Aam~ 100 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSK----GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEE-LAAMP 100 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhC----CceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHH-HhhhH
Confidence 4455677777766555543332222 111666677777666655443 3445666666665 456666666 36666
Q ss_pred CccEEEecCCCCCcCcC-cCCCCcccEEEccCCC
Q 003420 178 KLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCS 210 (821)
Q Consensus 178 ~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~ 210 (821)
.|+.|+++.|.+...|+ +..+.++.+|+..++.
T Consensus 101 aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 101 ALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred HhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 66666666666666666 5556666666655543
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.00 E-value=5.7e-05 Score=65.11 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=56.1
Q ss_pred ceeEEEecCCCccccccHH--HHhcCcCCcEEEeecCCCCcccccccc-cccCCCCCCCccEEEcCCCCCCCCcccccCC
Q 003420 75 EVSTLLIDGDRLRLEVDEG--FLARMKQLHALAIFNSGFKSLDLSSKT-EKKSEPEKLPMKLLVLRSCNLLNGIGDIELL 151 (821)
Q Consensus 75 ~l~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l 151 (821)
.+..++++.+.+- .++.. ......+|+..+|++|.+.++|..+.. .+. ++.+++..|.+...+..+..+
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t-------~t~lNl~~neisdvPeE~Aam 99 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPT-------ATTLNLANNEISDVPEELAAM 99 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccch-------hhhhhcchhhhhhchHHHhhh
Confidence 3344555555442 23222 123445555566666666555554432 223 556666666665555455556
Q ss_pred CCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC
Q 003420 152 KKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS 194 (821)
Q Consensus 152 ~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~ 194 (821)
+.|+.|+++. +.+...|.-++ .+.+|-+|+..+|....+|.
T Consensus 100 ~aLr~lNl~~-N~l~~~p~vi~-~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 100 PALRSLNLRF-NPLNAEPRVIA-PLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred HHhhhccccc-CccccchHHHH-HHHhHHHhcCCCCccccCcH
Confidence 6666666654 34445554443 35566666665555555543
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.86 E-value=0.001 Score=64.36 Aligned_cols=65 Identities=11% Similarity=0.041 Sum_probs=36.2
Q ss_pred CCCcccEEEccCCCCCCCCcc-----cccCCcccEEeecCCCCCCc----cChhhccCCCCCCEeeccCcCCcC
Q 003420 197 KLFNLRFLILRDCSSLQKLPR-----INELVRLEIIDLSGATSLTF----FPEQDLSKHQHLQMIDLSRTQIKR 261 (821)
Q Consensus 197 ~l~~L~~L~l~~~~~~~~l~~-----l~~l~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~l~~ 261 (821)
.-+.|+......|++..--.. +..-..|+.+.+..|..-.. +....+..+++|+.||+.+|.++.
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 445677776666654331111 23335677777766542111 111234567788888888887774
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.32 E-value=0.01 Score=53.15 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=21.1
Q ss_pred ccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEcc
Q 003420 148 IELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILR 207 (821)
Q Consensus 148 i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~ 207 (821)
+.++.+|+.+.+.. .+..++...|..+++|+.+.+.++ +..++. +..+++++.+.+.
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 33444455544442 234444444455555555555442 444443 4444445555553
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.0006 Score=66.18 Aligned_cols=80 Identities=20% Similarity=0.144 Sum_probs=52.5
Q ss_pred CCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCc--cccc
Q 003420 72 KWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI--GDIE 149 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~i~ 149 (821)
++.++++|+..|+.+. . ..+..+|+.|++|.|+-|.|.++.. +..|+. |+.|+|+.|.|...- .-+.
T Consensus 17 dl~~vkKLNcwg~~L~-D--Isic~kMp~lEVLsLSvNkIssL~p-l~rCtr-------LkElYLRkN~I~sldEL~YLk 85 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLD-D--ISICEKMPLLEVLSLSVNKISSLAP-LQRCTR-------LKELYLRKNCIESLDELEYLK 85 (388)
T ss_pred HHHHhhhhcccCCCcc-H--HHHHHhcccceeEEeeccccccchh-HHHHHH-------HHHHHHHhcccccHHHHHHHh
Confidence 4568889999999886 3 3456788888888888888866653 566666 777777777664322 2234
Q ss_pred CCCCccEEeccCC
Q 003420 150 LLKKLTVLEISGA 162 (821)
Q Consensus 150 ~l~~L~~L~l~~~ 162 (821)
++++||.|-|..|
T Consensus 86 nlpsLr~LWL~EN 98 (388)
T KOG2123|consen 86 NLPSLRTLWLDEN 98 (388)
T ss_pred cCchhhhHhhccC
Confidence 4444554444443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.03 E-value=0.013 Score=52.56 Aligned_cols=57 Identities=18% Similarity=0.301 Sum_probs=22.2
Q ss_pred cccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEcc
Q 003420 147 DIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILR 207 (821)
Q Consensus 147 ~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~ 207 (821)
.+..+++|+.+.+.. ....++...|..+++|+.+++..+ +..++. +..+ +|+.+.+.
T Consensus 53 ~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 53 AFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred eeecccccccccccc--cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 344454555555532 334444444455555555555443 444433 4444 55555544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.01 E-value=0.0045 Score=60.24 Aligned_cols=63 Identities=35% Similarity=0.387 Sum_probs=31.3
Q ss_pred ccCCCCccEEeccCCc--CCCcCchHhhhCCCCccEEEecCCCCCcC---cCcCCCCcccEEEccCCCC
Q 003420 148 IELLKKLTVLEISGAN--SVQKIPDKLLDEMTKLQSLNLSGCQMKFL---PSLSKLFNLRFLILRDCSS 211 (821)
Q Consensus 148 i~~l~~L~~L~l~~~~--~~~~lp~~~~~~l~~L~~L~l~~~~i~~l---p~l~~l~~L~~L~l~~~~~ 211 (821)
+-.+++|+.|.++.|+ ....++.-+ .++++|++|++++|++..+ +.+..+.+|..|++.+|..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 3445555555555542 222233222 3446666666666655532 2255555566666665543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.00045 Score=67.06 Aligned_cols=96 Identities=29% Similarity=0.395 Sum_probs=66.2
Q ss_pred CCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCCccccccccEEEeecCCCcCcCCC---CCCCCCcCEE
Q 003420 326 KNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPK---MNGLENLEVL 402 (821)
Q Consensus 326 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~l~~---~~~l~~L~~L 402 (821)
.+.++|+..+|.... ......|+.|+.|.++-|+++++.++..+.+|++|+|..|. +.++.. +.++|+|+.|
T Consensus 19 ~~vkKLNcwg~~L~D----Isic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD----ISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccH----HHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence 355666666666332 23345678888888888888888778888888888888775 333332 6678888888
Q ss_pred eccCCCCCCcCCC------CCCCCCCCEEE
Q 003420 403 DLSGCSKLVEFPK------LKDFPKLELLD 426 (821)
Q Consensus 403 ~l~~c~~l~~i~~------l~~l~~L~~L~ 426 (821)
.|..|+=.+..+. +.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888776655544 45677888775
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.81 E-value=0.0044 Score=60.30 Aligned_cols=103 Identities=27% Similarity=0.336 Sum_probs=53.3
Q ss_pred CCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCC--CCC-CCCC-ccccccccEEEeecCCCc--CcCCCCCCCCC
Q 003420 325 LKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNT--KLK-SLPP-LSNLHRLRKLFLKNCELL--EELPKMNGLEN 398 (821)
Q Consensus 325 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~--~l~-~l~~-~~~l~~L~~L~l~~~~~~--~~l~~~~~l~~ 398 (821)
+..|+.+++.++..++ ...+..+++|+.|.++.| ++. +++. ...+|+|++|++++|++- ..+.++..+.+
T Consensus 42 ~~~le~ls~~n~gltt----~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT----LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhhccceee----cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3455555555544332 223445566677777666 333 4444 445567777777766532 23334555666
Q ss_pred cCEEeccCCCCCCcCCC----CCCCCCCCEEEeeCCC
Q 003420 399 LEVLDLSGCSKLVEFPK----LKDFPKLELLDISNTG 431 (821)
Q Consensus 399 L~~L~l~~c~~l~~i~~----l~~l~~L~~L~l~~~~ 431 (821)
|..|++.+|....--.. +.-+++|+.|+-.+..
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 66666666654331111 4445666665544433
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.65 E-value=0.0013 Score=74.35 Aligned_cols=34 Identities=35% Similarity=0.516 Sum_probs=16.0
Q ss_pred cCEEeccCCCCCCcCCC--CCC-CCCCCEEEeeCCCC
Q 003420 399 LEVLDLSGCSKLVEFPK--LKD-FPKLELLDISNTGI 432 (821)
Q Consensus 399 L~~L~l~~c~~l~~i~~--l~~-l~~L~~L~l~~~~~ 432 (821)
++.|+++.|.....-.. ... +..++.+++.++..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 56666666553333221 111 44455555555444
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.40 E-value=0.0027 Score=71.74 Aligned_cols=124 Identities=31% Similarity=0.389 Sum_probs=70.8
Q ss_pred ccEEEcCCCCCCCC--c-ccccCCCCccEEeccC-CcCCCcCc---hHhhhCCCCccEEEecCCC-CCcC--cC-cCCCC
Q 003420 131 MKLLVLRSCNLLNG--I-GDIELLKKLTVLEISG-ANSVQKIP---DKLLDEMTKLQSLNLSGCQ-MKFL--PS-LSKLF 199 (821)
Q Consensus 131 L~~L~l~~~~~~~~--~-~~i~~l~~L~~L~l~~-~~~~~~lp---~~~~~~l~~L~~L~l~~~~-i~~l--p~-l~~l~ 199 (821)
|+.+.+.++..... . +....+++|+.|++++ +......+ ......+.+|+.|+++++. +++. .. ...++
T Consensus 190 L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~ 269 (482)
T KOG1947|consen 190 LKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCP 269 (482)
T ss_pred hhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCC
Confidence 77777766643332 1 3456677888888776 22222222 2234556788888888776 5543 22 33477
Q ss_pred cccEEEccCCCCCC--CCcc-cccCCcccEEeecCCCCCCccC-hhhccCCCCCCEeec
Q 003420 200 NLRFLILRDCSSLQ--KLPR-INELVRLEIIDLSGATSLTFFP-EQDLSKHQHLQMIDL 254 (821)
Q Consensus 200 ~L~~L~l~~~~~~~--~l~~-l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l 254 (821)
+|++|.+.+|.... .+.. ..++++|++|++++|..+++.. .....++++|+.|.+
T Consensus 270 ~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 270 NLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred CcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 88888877765322 2222 3667778888888877653311 122344666666543
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=0.0032 Score=58.66 Aligned_cols=42 Identities=24% Similarity=0.364 Sum_probs=22.5
Q ss_pred ccccEEEEeccccccccccccccccccccCCcccEEecccccccccc
Q 003420 752 KRLEVLEIKFCDSLETVYKHSGDEQDECALSTLKKLFLFKLPALTSL 798 (821)
Q Consensus 752 ~~L~~L~i~~C~~L~~i~~~~~~~~~~~~l~~L~~L~l~~cp~L~~l 798 (821)
++||.|+|+.|+.+++-- ......|++||.|+|++.|.....
T Consensus 151 ~~L~~L~lsgC~rIT~~G-----L~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGG-----LACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred cchheeeccCCCeechhH-----HHHHHHhhhhHHHHhcCchhhhch
Confidence 555555555555554332 122234666666666666665555
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.01 E-value=0.044 Score=31.52 Aligned_cols=16 Identities=44% Similarity=0.717 Sum_probs=7.2
Q ss_pred ccEEEecCCCCCcCcC
Q 003420 179 LQSLNLSGCQMKFLPS 194 (821)
Q Consensus 179 L~~L~l~~~~i~~lp~ 194 (821)
|++|++++|+++.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 4444444444444443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.92 E-value=0.041 Score=31.64 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=9.0
Q ss_pred CcEEEeecCCCCcccccc
Q 003420 101 LHALAIFNSGFKSLDLSS 118 (821)
Q Consensus 101 L~~L~l~~~~~~~l~~~~ 118 (821)
|++|++++|.++.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555454443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.56 E-value=0.13 Score=27.39 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=6.9
Q ss_pred CccEEEecCCCCCcCc
Q 003420 178 KLQSLNLSGCQMKFLP 193 (821)
Q Consensus 178 ~L~~L~l~~~~i~~lp 193 (821)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666555543
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.47 E-value=0.053 Score=50.78 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=44.5
Q ss_pred HhhcCCcEEEEecCCCCccc-chhchhhhcCCceEEEecccCceecccccchhhhhcCcceeeccccccccc
Q 003420 644 EILNNTEYISWVEPKPMKSL-SDLDAGSLVKMEGLWIARCIEMESIFGEEKDIELARNLKILWVSNLPKVES 714 (821)
Q Consensus 644 ~~~~~L~~L~i~~c~~l~~l-~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~L~~L~i~~c~~L~~ 714 (821)
..+++++.|.+.+|..+..+ -+.+.+-+++|+.|+|++|+++++--- ..+..|++|+.|.|.+++....
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL--~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL--ACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH--HHHHHhhhhHHHHhcCchhhhc
Confidence 34477777888888777666 112222377888888888888875411 1244677777777777765543
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.20 E-value=0.19 Score=26.71 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=5.4
Q ss_pred CCcEEEeecCCCCcc
Q 003420 100 QLHALAIFNSGFKSL 114 (821)
Q Consensus 100 ~L~~L~l~~~~~~~l 114 (821)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444433
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=80.29 E-value=1.4 Score=26.38 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=14.9
Q ss_pred CCCccEEEecCCCCCcCcC
Q 003420 176 MTKLQSLNLSGCQMKFLPS 194 (821)
Q Consensus 176 l~~L~~L~l~~~~i~~lp~ 194 (821)
+++|++|++++|.++.+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4678888888888888876
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=80.29 E-value=1.4 Score=26.38 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=14.9
Q ss_pred CCCccEEEecCCCCCcCcC
Q 003420 176 MTKLQSLNLSGCQMKFLPS 194 (821)
Q Consensus 176 l~~L~~L~l~~~~i~~lp~ 194 (821)
+++|++|++++|.++.+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4678888888888888876
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.38 E-value=0.13 Score=49.07 Aligned_cols=83 Identities=13% Similarity=0.110 Sum_probs=59.0
Q ss_pred CCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCC
Q 003420 72 KWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELL 151 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l 151 (821)
..+.++.|+++.|++. ..... |+-++.+..|+++.|.+..+|.+++.... ++.+++..|.....|.+++..
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e-------~~~~~~~~n~~~~~p~s~~k~ 110 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRE-------TVNAASHKNNHSQQPKSQKKE 110 (326)
T ss_pred ccceeeeehhhhhHHH-hhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHH-------HHHHHhhccchhhCCcccccc
Confidence 4567778888887764 33333 55667777788888888888888877777 777777777776666677777
Q ss_pred CCccEEeccCCc
Q 003420 152 KKLTVLEISGAN 163 (821)
Q Consensus 152 ~~L~~L~l~~~~ 163 (821)
+++++++..++.
T Consensus 111 ~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 111 PHPKKNEQKKTE 122 (326)
T ss_pred CCcchhhhccCc
Confidence 777777776643
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=78.25 E-value=1.5 Score=26.27 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=9.2
Q ss_pred cCCcEEEeecCCCCcccc
Q 003420 99 KQLHALAIFNSGFKSLDL 116 (821)
Q Consensus 99 ~~L~~L~l~~~~~~~l~~ 116 (821)
++|++|++++|.+..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555543
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=78.25 E-value=1.5 Score=26.27 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=9.2
Q ss_pred cCCcEEEeecCCCCcccc
Q 003420 99 KQLHALAIFNSGFKSLDL 116 (821)
Q Consensus 99 ~~L~~L~l~~~~~~~l~~ 116 (821)
++|++|++++|.+..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555543
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.80 E-value=0.095 Score=50.05 Aligned_cols=78 Identities=17% Similarity=0.153 Sum_probs=47.8
Q ss_pred ccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC-cCCCCcccEEEccCC
Q 003420 131 MKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDC 209 (821)
Q Consensus 131 L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~ 209 (821)
.++||++.|.....-..++.+..|..|+++. +.+..+|.++ +....++.+++..|+.+..|. +++.+++++++..++
T Consensus 44 ~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 44 VTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred eeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhH-HHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence 5555555555544444555556666666664 4556666664 666666666666666666666 666777776666665
Q ss_pred C
Q 003420 210 S 210 (821)
Q Consensus 210 ~ 210 (821)
.
T Consensus 122 ~ 122 (326)
T KOG0473|consen 122 E 122 (326)
T ss_pred c
Confidence 4
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=74.23 E-value=1.9 Score=25.82 Aligned_cols=16 Identities=31% Similarity=0.602 Sum_probs=10.5
Q ss_pred CCCceEEecCCCCCcc
Q 003420 727 ENLKHLHLDCCPRLKC 742 (821)
Q Consensus 727 ~sL~~L~i~~C~~L~~ 742 (821)
++|++|.|.+|+++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 5666677777766654
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=62.50 E-value=0.14 Score=56.52 Aligned_cols=179 Identities=22% Similarity=0.226 Sum_probs=95.2
Q ss_pred eeEEEecCCCccccc---cHHHHhcCcCCcEEEeecCCCCc-----cccccccc-ccCCCCCCCccEEEcCCCCCCCCc-
Q 003420 76 VSTLLIDGDRLRLEV---DEGFLARMKQLHALAIFNSGFKS-----LDLSSKTE-KKSEPEKLPMKLLVLRSCNLLNGI- 145 (821)
Q Consensus 76 l~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~-----l~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~- 145 (821)
+.++.+.+|.+...- ....+...+.|..|++++|.++. +-..+... .. +++|++..|.+...-
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~-------l~~L~l~~c~l~~~g~ 161 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCL-------LQTLELVSCSLTSEGA 161 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHH-------HHHHHhhcccccccch
Confidence 677888888765321 22345567778888888888741 11112221 22 666777777665432
Q ss_pred ----ccccCCCCccEEeccCCcCCC----cCchHh---hhCCCCccEEEecCCCCCc-----CcC-cCCCCc-ccEEEcc
Q 003420 146 ----GDIELLKKLTVLEISGANSVQ----KIPDKL---LDEMTKLQSLNLSGCQMKF-----LPS-LSKLFN-LRFLILR 207 (821)
Q Consensus 146 ----~~i~~l~~L~~L~l~~~~~~~----~lp~~~---~~~l~~L~~L~l~~~~i~~-----lp~-l~~l~~-L~~L~l~ 207 (821)
..+.....++.++++.|.... .++... +....++++|++.+|.++. +.. +...+. ++.|++.
T Consensus 162 ~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~ 241 (478)
T KOG4308|consen 162 APLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLA 241 (478)
T ss_pred HHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHH
Confidence 234456677777777654321 111111 1246677777777777653 111 334444 5557776
Q ss_pred CCCCCCC-----CcccccC-CcccEEeecCCCCCCccCh---hhccCCCCCCEeeccCcCCcC
Q 003420 208 DCSSLQK-----LPRINEL-VRLEIIDLSGATSLTFFPE---QDLSKHQHLQMIDLSRTQIKR 261 (821)
Q Consensus 208 ~~~~~~~-----l~~l~~l-~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~l~~ 261 (821)
.|..... .|.+..+ ..++.++++.|.....-.. ..+..++.++++.++.|.+..
T Consensus 242 ~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 242 SNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 6654432 1123444 5566777766653221110 233445566666666666653
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=57.07 E-value=9 Score=23.05 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=10.1
Q ss_pred CCccEEEecCCCCCcC
Q 003420 177 TKLQSLNLSGCQMKFL 192 (821)
Q Consensus 177 ~~L~~L~l~~~~i~~l 192 (821)
++|++|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4666667766666554
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=52.95 E-value=5.6 Score=23.15 Aligned_cols=13 Identities=38% Similarity=0.624 Sum_probs=5.4
Q ss_pred CCccEEEecCCCC
Q 003420 177 TKLQSLNLSGCQM 189 (821)
Q Consensus 177 ~~L~~L~l~~~~i 189 (821)
++|++|++++|++
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3455555555543
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=52.93 E-value=9.3 Score=22.95 Aligned_cols=18 Identities=39% Similarity=0.573 Sum_probs=13.7
Q ss_pred CCccEEEecCCCCCcCcC
Q 003420 177 TKLQSLNLSGCQMKFLPS 194 (821)
Q Consensus 177 ~~L~~L~l~~~~i~~lp~ 194 (821)
.+|+.|++++|+++.+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357788888888887776
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.60 E-value=9.3 Score=41.97 Aligned_cols=77 Identities=27% Similarity=0.271 Sum_probs=43.2
Q ss_pred CCCCCcEEEecCCCCCCCCC----ccccccccEEEeecCCC-cCcCCCC--CCCCCcCEEeccCCCCCCcCCC-------
Q 003420 350 DLDYLRELNLSNTKLKSLPP----LSNLHRLRKLFLKNCEL-LEELPKM--NGLENLEVLDLSGCSKLVEFPK------- 415 (821)
Q Consensus 350 ~l~~L~~L~l~~~~l~~l~~----~~~l~~L~~L~l~~~~~-~~~l~~~--~~l~~L~~L~l~~c~~l~~i~~------- 415 (821)
+.+.+..+++++|++..+.. .+..|+|+.|+|++|.. +....++ .....|++|-+.||+..+....
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 34566666677766654444 34567777777777721 1111122 1234577777777776655432
Q ss_pred -CCCCCCCCEEE
Q 003420 416 -LKDFPKLELLD 426 (821)
Q Consensus 416 -l~~l~~L~~L~ 426 (821)
...||+|..||
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 22577776654
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=41.69 E-value=1 Score=49.89 Aligned_cols=155 Identities=21% Similarity=0.202 Sum_probs=102.5
Q ss_pred CCCceeEEEecCCCccccccHHHHhcC----cCCcEEEeecCCC-----CcccccccccccCCCCCCCccEEEcCCCCCC
Q 003420 72 KWDEVSTLLIDGDRLRLEVDEGFLARM----KQLHALAIFNSGF-----KSLDLSSKTEKKSEPEKLPMKLLVLRSCNLL 142 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~~~~~~~~~~l----~~L~~L~l~~~~~-----~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 142 (821)
....|..|++++|.+...-....-..+ ..+++|++..+.+ ..+...+....+ ++.++++.|.+.
T Consensus 113 t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~-------l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 113 TLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEH-------LTELDLSLNGLI 185 (478)
T ss_pred ccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccc-------hhHHHHHhcccc
Confidence 457889999999998632222222222 4467788887777 344555666666 999999988774
Q ss_pred CCc-----cccc----CCCCccEEeccCCcCCCcCc---hHhhhCCCC-ccEEEecCCCCCcC-----cC-cCCC-Cccc
Q 003420 143 NGI-----GDIE----LLKKLTVLEISGANSVQKIP---DKLLDEMTK-LQSLNLSGCQMKFL-----PS-LSKL-FNLR 202 (821)
Q Consensus 143 ~~~-----~~i~----~l~~L~~L~l~~~~~~~~lp---~~~~~~l~~-L~~L~l~~~~i~~l-----p~-l~~l-~~L~ 202 (821)
..- ..+. ...++++|++.+|......- ...+...+. ++.|++..|.+.+. .. +..+ ..++
T Consensus 186 ~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~ 265 (478)
T KOG4308|consen 186 ELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLR 265 (478)
T ss_pred hhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhh
Confidence 321 2233 47789999999865431111 112344455 77799999987752 33 6666 7889
Q ss_pred EEEccCCCCCCCC----cc-cccCCcccEEeecCCC
Q 003420 203 FLILRDCSSLQKL----PR-INELVRLEIIDLSGAT 233 (821)
Q Consensus 203 ~L~l~~~~~~~~l----~~-l~~l~~L~~L~l~~~~ 233 (821)
+++++.|.+...- .. +..+++++.+.++.|.
T Consensus 266 ~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 266 VLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 9999999876633 33 5677799999999876
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.62 E-value=15 Score=40.49 Aligned_cols=80 Identities=20% Similarity=0.173 Sum_probs=51.0
Q ss_pred CCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCC--CCCCCCCcc--ccccccEEEeecCCCcCcCCC-------
Q 003420 324 GLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNT--KLKSLPPLS--NLHRLRKLFLKNCELLEELPK------- 392 (821)
Q Consensus 324 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~--~l~~l~~~~--~l~~L~~L~l~~~~~~~~l~~------- 392 (821)
+.+.+..+++++|.....+.+...-...|+|+.|++++| .+.+-+.+. ....|++|.+.||++.+....
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 345566667777766554444444555688889999888 444333322 234678899999998776532
Q ss_pred -CCCCCCcCEEe
Q 003420 393 -MNGLENLEVLD 403 (821)
Q Consensus 393 -~~~l~~L~~L~ 403 (821)
...||+|..||
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 12478887766
No 91
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=35.93 E-value=60 Score=22.31 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=15.3
Q ss_pred CCCCceEEecCCCCCcccccCCCcccccccEEEEec
Q 003420 726 LENLKHLHLDCCPRLKCVFASPDQIPKRLEVLEIKF 761 (821)
Q Consensus 726 ~~sL~~L~i~~C~~L~~~~p~~~~l~~~L~~L~i~~ 761 (821)
++++++|.+.+.=+-.- - .+.+|++|++|.+.+
T Consensus 11 P~~l~~L~~g~~fn~~i-~--~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 11 PSSLKSLIFGSSFNQPI-E--PGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCCeEEEECCccCccC-C--CCccCCCceEEEeeC
Confidence 45666666632211110 1 245556666666543
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=34.67 E-value=28 Score=21.24 Aligned_cols=14 Identities=29% Similarity=0.480 Sum_probs=7.9
Q ss_pred CCccEEEecCCCCC
Q 003420 177 TKLQSLNLSGCQMK 190 (821)
Q Consensus 177 ~~L~~L~l~~~~i~ 190 (821)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35566666666554
Done!