Query 003421
Match_columns 821
No_of_seqs 319 out of 5300
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 00:37:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2E-42 6.8E-47 410.3 31.8 613 74-813 50-739 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.6E-41 5.6E-46 402.5 28.9 642 72-799 75-744 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 8.3E-37 2.8E-41 359.2 40.2 313 74-432 25-365 (680)
4 3t6q_A CD180 antigen; protein- 100.0 6.2E-36 2.1E-40 346.9 33.5 310 100-433 34-363 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-34 4.3E-39 340.6 42.5 389 52-470 25-446 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 9.5E-36 3.3E-40 345.3 30.5 330 62-433 21-363 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 4.5E-34 1.5E-38 331.3 27.4 441 52-546 32-549 (606)
8 3t6q_A CD180 antigen; protein- 100.0 3E-33 1E-37 324.4 34.1 451 53-532 34-560 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-32 1E-36 326.6 40.1 335 77-435 7-377 (844)
10 4eco_A Uncharacterized protein 100.0 2E-32 6.9E-37 316.9 24.9 409 74-533 81-601 (636)
11 4ecn_A Leucine-rich repeat pro 100.0 6.4E-32 2.2E-36 317.2 28.7 411 74-534 323-842 (876)
12 2z63_A TOLL-like receptor 4, v 100.0 7.2E-32 2.5E-36 310.6 25.7 317 74-433 28-360 (570)
13 3j0a_A TOLL-like receptor 5; m 100.0 7.2E-31 2.5E-35 314.5 35.1 453 51-532 23-560 (844)
14 2z63_A TOLL-like receptor 4, v 100.0 1.4E-31 4.9E-36 308.1 27.2 426 52-532 28-531 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-31 3.8E-36 307.4 24.4 196 74-279 26-233 (549)
16 4eco_A Uncharacterized protein 100.0 4.6E-31 1.6E-35 305.5 25.7 347 90-467 198-600 (636)
17 2z81_A CD282 antigen, TOLL-lik 100.0 4.9E-30 1.7E-34 293.7 30.8 447 52-531 26-509 (549)
18 4ecn_A Leucine-rich repeat pro 100.0 3.8E-30 1.3E-34 302.2 29.2 345 90-468 440-841 (876)
19 2z7x_B TOLL-like receptor 1, v 100.0 5.7E-31 1.9E-35 299.1 16.2 349 61-433 9-387 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-29 3.7E-34 288.6 26.2 421 52-532 21-481 (520)
21 1o6v_A Internalin A; bacterial 100.0 9.8E-29 3.3E-33 276.0 29.4 347 72-469 44-390 (466)
22 1o6v_A Internalin A; bacterial 100.0 1.9E-28 6.5E-33 273.6 30.5 346 52-436 46-391 (466)
23 1jl5_A Outer protein YOPM; leu 100.0 4.3E-28 1.5E-32 268.0 28.8 393 72-534 9-411 (454)
24 3v47_A TOLL-like receptor 5B a 100.0 3.3E-28 1.1E-32 271.5 27.8 347 74-432 30-407 (455)
25 4fmz_A Internalin; leucine ric 100.0 6E-28 2.1E-32 259.0 27.2 304 97-433 42-346 (347)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.3E-27 1.5E-31 269.4 29.9 387 56-471 35-514 (562)
27 3v47_A TOLL-like receptor 5B a 100.0 2.1E-27 7E-32 265.1 25.6 362 78-472 14-413 (455)
28 3o6n_A APL1; leucine-rich repe 100.0 2.9E-27 1E-31 257.9 25.7 305 72-433 43-352 (390)
29 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-26 3.8E-31 257.0 29.5 342 73-473 41-393 (457)
30 4fmz_A Internalin; leucine ric 100.0 2.2E-26 7.5E-31 246.9 28.2 301 72-409 42-345 (347)
31 4g8a_A TOLL-like receptor 4; l 99.9 1.2E-26 4.1E-31 270.8 27.7 130 623-761 443-576 (635)
32 2id5_A Lingo-1, leucine rich r 99.9 2.1E-26 7E-31 258.4 27.5 308 78-433 15-333 (477)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.5E-26 1.2E-30 261.9 29.5 398 73-532 30-510 (562)
34 4g8a_A TOLL-like receptor 4; l 99.9 3.9E-26 1.3E-30 266.5 29.7 406 74-534 52-557 (635)
35 3oja_B Anopheles plasmodium-re 99.9 3.2E-26 1.1E-30 263.5 25.7 304 72-433 49-358 (597)
36 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-25 5.6E-30 247.5 29.3 307 95-468 38-353 (457)
37 2id5_A Lingo-1, leucine rich r 99.9 3E-26 1E-30 257.1 23.6 301 61-409 20-332 (477)
38 1jl5_A Outer protein YOPM; leu 99.9 2E-24 6.9E-29 238.6 33.7 343 75-477 72-421 (454)
39 3o6n_A APL1; leucine-rich repe 99.9 3.8E-25 1.3E-29 241.1 23.9 304 97-469 43-354 (390)
40 3oja_B Anopheles plasmodium-re 99.9 1.4E-24 4.9E-29 249.7 23.4 305 97-470 49-361 (597)
41 2ft3_A Biglycan; proteoglycan, 99.9 1E-23 3.5E-28 224.3 25.1 282 99-431 33-331 (332)
42 1xku_A Decorin; proteoglycan, 99.9 1.8E-23 6.1E-28 222.3 26.5 283 99-430 31-329 (330)
43 1xku_A Decorin; proteoglycan, 99.9 1.8E-21 6.3E-26 206.7 27.5 260 74-385 52-330 (330)
44 2ft3_A Biglycan; proteoglycan, 99.9 1.6E-21 5.5E-26 207.3 24.8 277 131-464 35-330 (332)
45 1ogq_A PGIP-2, polygalacturona 99.9 9.7E-23 3.3E-27 214.2 14.9 244 74-386 50-303 (313)
46 3zyj_A Leucine-rich repeat-con 99.9 4.3E-21 1.5E-25 212.3 24.5 241 100-386 44-291 (440)
47 1ogq_A PGIP-2, polygalacturona 99.9 1.6E-22 5.4E-27 212.6 11.8 244 99-412 50-306 (313)
48 4fcg_A Uncharacterized protein 99.9 2E-21 6.7E-26 205.5 19.8 157 97-278 79-238 (328)
49 3zyi_A Leucine-rich repeat-con 99.9 5.1E-21 1.8E-25 212.5 23.7 240 100-385 55-301 (452)
50 4fcg_A Uncharacterized protein 99.9 1.6E-21 5.5E-26 206.2 17.9 198 73-280 80-288 (328)
51 1z7x_W Ribonuclease inhibitor; 99.9 4E-24 1.4E-28 239.0 -3.5 344 74-433 3-411 (461)
52 2z80_A TOLL-like receptor 2, v 99.9 2.1E-21 7.2E-26 208.3 17.1 273 74-389 31-316 (353)
53 2z80_A TOLL-like receptor 2, v 99.9 1.3E-20 4.4E-25 202.1 19.3 262 155-433 34-314 (353)
54 2z66_A Variable lymphocyte rec 99.8 5.4E-20 1.8E-24 193.1 21.5 144 102-257 10-160 (306)
55 3g06_A SSPH2 (leucine-rich rep 99.8 1.5E-19 5.2E-24 205.6 26.2 260 100-414 41-301 (622)
56 3zyj_A Leucine-rich repeat-con 99.8 1E-19 3.6E-24 201.2 24.0 238 154-433 45-292 (440)
57 3zyi_A Leucine-rich repeat-con 99.8 1.2E-19 4.2E-24 201.4 24.4 238 155-432 57-302 (452)
58 2z66_A Variable lymphocyte rec 99.8 2.7E-20 9.3E-25 195.4 17.5 239 132-433 10-261 (306)
59 3g06_A SSPH2 (leucine-rich rep 99.8 3.9E-19 1.3E-23 202.2 28.2 259 75-390 41-300 (622)
60 1ozn_A Reticulon 4 receptor; N 99.8 7.6E-20 2.6E-24 189.8 17.9 197 131-365 34-238 (285)
61 3ogk_B Coronatine-insensitive 99.8 1.6E-21 5.4E-26 225.3 4.7 368 72-470 110-529 (592)
62 3o53_A Protein LRIM1, AGAP0063 99.8 7.2E-21 2.5E-25 200.6 7.4 174 75-265 11-187 (317)
63 1z7x_W Ribonuclease inhibitor; 99.8 3.2E-22 1.1E-26 223.5 -4.8 346 72-433 26-440 (461)
64 1ozn_A Reticulon 4 receptor; N 99.8 1.2E-19 3.9E-24 188.4 13.8 217 132-388 14-239 (285)
65 1wwl_A Monocyte differentiatio 99.8 6.6E-21 2.3E-25 200.3 2.9 124 74-211 43-185 (312)
66 3ogk_B Coronatine-insensitive 99.8 1E-21 3.6E-26 226.7 -3.9 370 72-468 71-502 (592)
67 3o53_A Protein LRIM1, AGAP0063 99.8 2.1E-19 7.1E-24 189.4 11.3 110 321-433 139-250 (317)
68 2p1m_B Transport inhibitor res 99.8 1.5E-19 5E-24 208.9 6.0 305 78-428 47-405 (594)
69 2o6q_A Variable lymphocyte rec 99.8 1.3E-17 4.4E-22 171.3 19.0 191 76-279 18-215 (270)
70 1wwl_A Monocyte differentiatio 99.8 1.2E-18 4.1E-23 183.0 11.1 220 76-316 65-309 (312)
71 2o6q_A Variable lymphocyte rec 99.8 4.2E-17 1.5E-21 167.4 22.2 170 99-279 16-191 (270)
72 3oja_A Leucine-rich immune mol 99.8 1.3E-18 4.6E-23 194.0 11.8 231 99-405 34-270 (487)
73 2p1m_B Transport inhibitor res 99.8 1E-20 3.5E-25 218.6 -5.7 364 72-467 103-519 (594)
74 3rfs_A Internalin B, repeat mo 99.8 1.1E-17 3.7E-22 172.0 16.4 173 96-279 38-215 (272)
75 1h6u_A Internalin H; cell adhe 99.7 1.1E-17 3.7E-22 175.1 16.4 190 72-280 39-228 (308)
76 3oja_A Leucine-rich immune mol 99.7 7.3E-18 2.5E-22 188.0 14.2 211 178-433 35-250 (487)
77 2xwt_C Thyrotropin receptor; s 99.7 1.5E-17 5.3E-22 167.4 15.1 132 131-263 33-172 (239)
78 1p9a_G Platelet glycoprotein I 99.7 2.2E-17 7.6E-22 170.9 16.4 191 73-278 9-204 (290)
79 2z62_A TOLL-like receptor 4, v 99.7 1.7E-17 5.9E-22 171.1 15.4 196 74-280 28-235 (276)
80 2z62_A TOLL-like receptor 4, v 99.7 3.6E-17 1.2E-21 168.7 17.8 149 103-263 11-165 (276)
81 2xwt_C Thyrotropin receptor; s 99.7 1.4E-17 4.9E-22 167.6 14.4 193 74-279 31-236 (239)
82 4ay9_X Follicle-stimulating ho 99.7 6.2E-17 2.1E-21 172.9 19.8 234 155-429 12-255 (350)
83 1h6u_A Internalin H; cell adhe 99.7 5.9E-17 2E-21 169.5 19.1 181 80-279 25-205 (308)
84 3rfs_A Internalin B, repeat mo 99.7 1.9E-17 6.5E-22 170.1 14.1 200 64-281 31-234 (272)
85 1p9a_G Platelet glycoprotein I 99.7 8.7E-17 3E-21 166.5 18.6 194 54-260 12-208 (290)
86 4ay9_X Follicle-stimulating ho 99.7 1.7E-16 5.7E-21 169.5 18.8 238 102-406 12-255 (350)
87 3m19_A Variable lymphocyte rec 99.7 8.1E-16 2.8E-20 155.9 18.8 169 100-279 15-189 (251)
88 4glp_A Monocyte differentiatio 99.7 4.8E-17 1.7E-21 170.7 8.8 220 74-316 64-307 (310)
89 1h6t_A Internalin B; cell adhe 99.7 6.9E-16 2.4E-20 159.8 16.9 168 97-280 44-211 (291)
90 4glp_A Monocyte differentiatio 99.7 4.4E-16 1.5E-20 163.3 15.0 222 98-365 63-307 (310)
91 2ast_B S-phase kinase-associat 99.7 5.2E-17 1.8E-21 172.9 6.5 146 75-232 48-205 (336)
92 3m19_A Variable lymphocyte rec 99.7 1.2E-15 4.1E-20 154.7 16.0 174 75-261 15-193 (251)
93 2ast_B S-phase kinase-associat 99.6 2E-16 6.8E-21 168.4 7.7 246 99-392 47-311 (336)
94 1h6t_A Internalin B; cell adhe 99.6 1.6E-15 5.5E-20 157.1 14.1 180 65-263 37-216 (291)
95 2ca6_A RAN GTPase-activating p 99.6 3E-17 1E-21 178.2 -0.4 39 95-140 28-71 (386)
96 1m9s_A Internalin B; cell inva 99.6 1.1E-15 3.8E-20 173.7 10.4 171 72-261 41-211 (605)
97 4ezg_A Putative uncharacterize 99.6 8E-15 2.7E-19 142.4 12.1 151 97-260 42-194 (197)
98 1xeu_A Internalin C; cellular 99.6 2.4E-15 8.3E-20 153.1 7.9 170 73-262 18-187 (263)
99 1m9s_A Internalin B; cell inva 99.6 1.8E-14 6.2E-19 163.7 14.8 189 74-281 21-209 (605)
100 1xeu_A Internalin C; cellular 99.6 1.1E-14 3.8E-19 148.2 11.2 167 97-280 17-183 (263)
101 2v70_A SLIT-2, SLIT homolog 2 99.5 4.1E-14 1.4E-18 139.8 14.6 148 102-260 14-166 (220)
102 3goz_A Leucine-rich repeat-con 99.5 1.7E-15 5.9E-20 162.5 5.0 125 134-260 3-151 (362)
103 3cvr_A Invasion plasmid antige 99.5 4.2E-14 1.4E-18 158.8 16.1 179 100-318 60-245 (571)
104 2o6s_A Variable lymphocyte rec 99.5 6.1E-14 2.1E-18 137.6 15.4 146 103-259 11-160 (208)
105 3e6j_A Variable lymphocyte rec 99.5 9.6E-14 3.3E-18 138.2 16.5 148 101-260 21-172 (229)
106 2o6s_A Variable lymphocyte rec 99.5 6.6E-14 2.3E-18 137.3 15.0 169 131-320 9-182 (208)
107 2v9t_B SLIT homolog 2 protein 99.5 6.2E-14 2.1E-18 138.6 14.8 148 102-260 14-165 (220)
108 3goz_A Leucine-rich repeat-con 99.5 5.4E-15 1.8E-19 158.7 7.7 178 74-262 22-240 (362)
109 4ezg_A Putative uncharacterize 99.5 5.3E-14 1.8E-18 136.6 13.6 151 117-280 39-192 (197)
110 3cvr_A Invasion plasmid antige 99.5 1.5E-13 5.1E-18 154.3 18.6 179 131-366 61-244 (571)
111 2xot_A Amphoterin-induced prot 99.5 5.3E-14 1.8E-18 150.7 12.9 150 103-263 22-179 (361)
112 2ca6_A RAN GTPase-activating p 99.5 4.1E-15 1.4E-19 161.3 4.3 227 73-319 31-319 (386)
113 2v70_A SLIT-2, SLIT homolog 2 99.4 1E-12 3.5E-17 129.8 15.2 146 131-280 13-164 (220)
114 2v9t_B SLIT homolog 2 protein 99.4 1.2E-12 3.9E-17 129.4 15.5 146 131-280 13-163 (220)
115 2xot_A Amphoterin-induced prot 99.4 1.8E-13 6.3E-18 146.5 10.4 171 77-260 21-202 (361)
116 3e6j_A Variable lymphocyte rec 99.4 1.9E-12 6.4E-17 128.8 16.4 145 131-280 21-170 (229)
117 2ell_A Acidic leucine-rich nuc 99.4 1.5E-12 5.3E-17 122.7 11.8 126 98-232 23-157 (168)
118 3sb4_A Hypothetical leucine ri 99.4 4.1E-12 1.4E-16 134.2 16.2 277 73-403 24-327 (329)
119 1dce_A Protein (RAB geranylger 99.4 1.1E-14 3.7E-19 164.6 -4.4 105 154-263 443-549 (567)
120 1dce_A Protein (RAB geranylger 99.3 2.5E-14 8.7E-19 161.5 -5.8 173 96-280 346-544 (567)
121 2ell_A Acidic leucine-rich nuc 99.3 4.4E-12 1.5E-16 119.5 10.3 130 131-264 26-164 (168)
122 2je0_A Acidic leucine-rich nuc 99.3 3.4E-12 1.2E-16 117.6 9.0 124 98-230 16-148 (149)
123 1w8a_A SLIT protein; signaling 99.3 1.4E-11 4.7E-16 118.7 12.2 122 102-233 11-137 (192)
124 4b8c_D Glucose-repressible alc 99.3 1.5E-12 5E-17 152.0 4.3 114 94-216 219-333 (727)
125 1a9n_A U2A', U2A'; complex (nu 99.3 5.7E-12 2E-16 119.7 7.6 104 97-210 17-124 (176)
126 2wfh_A SLIT homolog 2 protein 99.3 1.7E-11 5.7E-16 118.1 10.8 122 78-211 14-138 (193)
127 2wfh_A SLIT homolog 2 protein 99.3 4E-11 1.4E-15 115.5 13.2 121 102-232 13-136 (193)
128 2je0_A Acidic leucine-rich nuc 99.3 9.9E-12 3.4E-16 114.4 8.4 120 131-254 19-147 (149)
129 1w8a_A SLIT protein; signaling 99.2 5.7E-11 1.9E-15 114.4 12.6 127 131-261 10-140 (192)
130 3sb4_A Hypothetical leucine ri 99.2 2.2E-11 7.7E-16 128.5 10.4 190 73-274 48-326 (329)
131 2o6r_A Variable lymphocyte rec 99.2 1.6E-10 5.6E-15 109.7 14.5 100 101-210 9-111 (177)
132 4b8c_D Glucose-repressible alc 99.2 5.3E-12 1.8E-16 147.2 4.8 100 131-233 226-327 (727)
133 2o6r_A Variable lymphocyte rec 99.2 1.7E-10 5.7E-15 109.6 13.4 124 78-213 11-138 (177)
134 4fs7_A Uncharacterized protein 99.2 1E-09 3.4E-14 118.9 20.7 303 89-429 61-375 (394)
135 1a9n_A U2A', U2A'; complex (nu 99.2 1.8E-11 6.3E-16 116.1 5.7 130 71-211 16-152 (176)
136 4fdw_A Leucine rich hypothetic 99.2 2.3E-09 8E-14 115.4 22.8 251 131-431 115-381 (401)
137 4fdw_A Leucine rich hypothetic 99.2 1.1E-09 3.9E-14 117.9 19.6 165 96-279 110-281 (401)
138 1ds9_A Outer arm dynein; leuci 99.1 1.1E-12 3.8E-17 127.3 -6.4 110 94-214 43-155 (198)
139 4fs7_A Uncharacterized protein 99.1 2.4E-09 8.3E-14 115.9 18.4 313 72-425 69-393 (394)
140 2r9u_A Variable lymphocyte rec 99.0 7.8E-10 2.7E-14 104.3 11.2 103 102-214 15-120 (174)
141 3g39_A Variable lymphocyte rec 99.0 7.6E-10 2.6E-14 104.0 11.0 106 101-216 11-119 (170)
142 1ds9_A Outer arm dynein; leuci 99.0 2.4E-12 8.1E-17 125.0 -7.8 111 113-233 39-151 (198)
143 4gt6_A Cell surface protein; l 98.9 2.9E-07 1E-11 99.4 23.9 247 147-431 109-368 (394)
144 4gt6_A Cell surface protein; l 98.8 1.3E-07 4.3E-12 102.3 20.3 315 75-431 65-389 (394)
145 3g39_A Variable lymphocyte rec 98.8 1.6E-08 5.5E-13 94.9 11.5 99 131-232 11-112 (170)
146 2r9u_A Variable lymphocyte rec 98.8 2E-08 6.7E-13 94.6 11.6 84 177-261 33-119 (174)
147 3un9_A NLR family member X1; l 98.6 8.6E-09 2.9E-13 109.9 1.6 150 74-233 72-250 (372)
148 2ifg_A High affinity nerve gro 98.6 1.4E-07 4.7E-12 100.1 10.2 101 103-213 12-117 (347)
149 3un9_A NLR family member X1; l 98.5 1.2E-08 4.2E-13 108.7 -0.2 155 98-261 71-253 (372)
150 4h09_A Hypothetical leucine ri 98.5 1.4E-05 4.9E-10 85.7 22.6 121 300-429 214-342 (379)
151 2ifg_A High affinity nerve gro 98.4 5.6E-07 1.9E-11 95.5 10.5 78 134-212 13-93 (347)
152 4h09_A Hypothetical leucine ri 98.2 0.00011 3.8E-09 78.6 23.2 298 74-420 46-356 (379)
153 2ra8_A Uncharacterized protein 98.1 2.7E-06 9.2E-11 89.7 5.9 179 72-260 105-320 (362)
154 2ra8_A Uncharacterized protein 98.0 6.3E-06 2.2E-10 86.9 6.0 175 72-258 137-341 (362)
155 3e4g_A ATP synthase subunit S, 97.8 1.8E-05 6.1E-10 72.9 4.7 81 131-211 63-151 (176)
156 3e4g_A ATP synthase subunit S, 97.7 4.3E-05 1.5E-09 70.4 6.7 64 671-742 84-154 (176)
157 1io0_A Tropomodulin; LRR prote 97.7 9.7E-06 3.3E-10 76.8 1.7 38 74-111 36-77 (185)
158 1io0_A Tropomodulin; LRR prote 97.6 4.7E-05 1.6E-09 72.0 4.5 111 92-211 29-163 (185)
159 3rw6_A Nuclear RNA export fact 97.4 0.00017 5.8E-09 71.8 6.0 80 96-183 167-257 (267)
160 3rw6_A Nuclear RNA export fact 97.2 0.00025 8.6E-09 70.6 5.4 78 175-253 168-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 94.3 0.048 1.6E-06 51.0 5.5 81 74-161 41-135 (197)
162 3rfe_A Platelet glycoprotein I 93.7 0.084 2.9E-06 45.9 5.5 52 156-211 12-67 (130)
163 3rfe_A Platelet glycoprotein I 92.9 0.16 5.6E-06 44.1 6.1 36 153-189 32-67 (130)
164 1pgv_A TMD-1, tropomodulin TMD 92.8 0.048 1.6E-06 51.0 2.7 61 94-161 36-107 (197)
165 2lz0_A Uncharacterized protein 29.7 40 0.0014 27.1 3.3 40 167-207 10-51 (100)
166 2lz0_A Uncharacterized protein 28.7 55 0.0019 26.3 4.0 40 146-187 14-53 (100)
167 1h7d_A Aminolevulinic acid syn 20.9 61 0.0021 22.0 2.3 33 789-821 8-48 (49)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-42 Score=410.33 Aligned_cols=613 Identities=17% Similarity=0.124 Sum_probs=420.5
Q ss_pred CceeEEEecCCCcccc---ccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCc-c--c
Q 003421 74 DEVSTLLIDGDRLRLE---VDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-G--D 147 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~--~ 147 (821)
..|+.|+++++.+.|. ++. .+.++++|+.++++.+++..+|..++.+++ |++|++++|.+.+.+ . .
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~-~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~-------L~~L~Ls~n~l~~~~~~~~~ 121 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSS-SLLSLTGLESLFLSNSHINGSVSGFKCSAS-------LTSLDLSRNSLSGPVTTLTS 121 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHH-HTTTCTTCCEEECTTSCEEECCCCCCCCTT-------CCEEECCSSEEEEEGGGGGG
T ss_pred CcEEEEECCCCCcCCccCccCh-hHhccCcccccCCcCCCcCCCchhhccCCC-------CCEEECCCCcCCCcCCChHH
Confidence 4788899998888776 554 467788888888888887667788888888 999999988887644 3 6
Q ss_pred ccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC-----cCCCCcccEEEccCCCCCCCCcccccCC
Q 003421 148 IELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS-----LSKLFNLRFLILRDCSSLQKLPRINELV 222 (821)
Q Consensus 148 i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~-----l~~l~~L~~L~l~~~~~~~~l~~l~~l~ 222 (821)
++++++|++|++++|...+.+|..++.++++|++|++++|.++..+. +..+++|++|++++|.+.+..+ +..++
T Consensus 122 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~ 200 (768)
T 3rgz_A 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCV 200 (768)
T ss_dssp GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCT
T ss_pred HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCC
Confidence 88888999999988776667776655788899999999988876432 5788889999998887665444 37888
Q ss_pred cccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcC-CCC-cCCCCCCceEeecCccccccccccccCCCCCCCCCC
Q 003421 223 RLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKR-LPK-FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPL 300 (821)
Q Consensus 223 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 300 (821)
+|++|++++|...+.++ . ++++++|++|++++|.+++ +|. +..+++|++|++++|......+ ..
T Consensus 201 ~L~~L~Ls~n~l~~~~~-~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~------------~~ 266 (768)
T 3rgz_A 201 NLEFLDVSSNNFSTGIP-F-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP------------PL 266 (768)
T ss_dssp TCCEEECCSSCCCSCCC-B-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCC------------CC
T ss_pred cCCEEECcCCcCCCCCc-c-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccC------------cc
Confidence 88999998887444454 3 8888899999999888885 343 7888888888888876443332 12
Q ss_pred CCCCCcEEEecCCCCCCCCC-CCCC-CCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCC-CCCC--cccccc
Q 003421 301 FPVSLSELHLRDCPTLKRLP-HIAG-LKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLK-SLPP--LSNLHR 375 (821)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~-~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~--~~~l~~ 375 (821)
.+++|++|++.+|...+.+| .+.. +++|+.|++++|.... ..+..+..+++|+.|++++|.+. .+|. +..+++
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~ 344 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG--AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE--CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTT
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC--ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCC
Confidence 56788888888887665666 4444 4888888888887544 67778888888888888888877 6675 778888
Q ss_pred ccEEEeecCCCcCcCCC-CCCCC-CcCEEeccCCCCCCcCCC-CCC--CCCCCEEEeeCCCCCccCCCccccCCCCCchh
Q 003421 376 LRKLFLKNCELLEELPK-MNGLE-NLEVLDLSGCSKLVEFPK-LKD--FPKLELLDISNTGIKVVPSDISVTSSNFTPDE 450 (821)
Q Consensus 376 L~~L~l~~~~~~~~l~~-~~~l~-~L~~L~l~~c~~l~~i~~-l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 450 (821)
|++|++++|.+.+.+|. +..++ +|++|++++|...+.++. +.. +++|++|++++|.++. ..+. .+
T Consensus 345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~--------~l 414 (768)
T 3rgz_A 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG--KIPP--------TL 414 (768)
T ss_dssp CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE--ECCG--------GG
T ss_pred CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc--ccCH--------HH
Confidence 88888888887666665 55555 888888888876666666 444 7788888888888741 1121 33
Q ss_pred hhhcccceeeecccccCCCCccccccCcceeeccCccccCCCcccccccceeccCCcccccCCCCcch---hcccCCCCC
Q 003421 451 KHRQASGVFNLVGSLAKGKKPLILANDGQIFQSDTGIKADPSEIAATSSNVVPDKKHRQAHGKKPSVL---VNDGGNSQS 527 (821)
Q Consensus 451 ~~~~~l~~l~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~---~~L~~L~ls 527 (821)
..++.++.+++++|.+.+..|..+... ..++.+++++|.+.+.+|..+ ++|+.|+++
T Consensus 415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l--------------------~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 415 SNCSELVSLHLSFNYLSGTIPSSLGSL--------------------SKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGC--------------------TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred hcCCCCCEEECcCCcccCcccHHHhcC--------------------CCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 445677888888888888777654443 234556667777777777654 347777777
Q ss_pred CCCCc-cCCcccCCCCchhHHHHhhhccCCCCCCcccccccCCCceecCChhhhhhhccChhHHHhhhccccccCCCCcc
Q 003421 528 NDGME-ADPSKISAPKSANEVTDKRRGQANGVFTPAESQAKGKPSILTNDGEIVQSLEKNPELKEVRKLEISIPLSPSNE 606 (821)
Q Consensus 528 ~~~~~-~~~~~l~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~~~~l~i~~~~~~~ 606 (821)
+|.+. .+|.++.++++|+.++..... -.
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~--------------------------------------------------l~- 503 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNR--------------------------------------------------LT- 503 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSC--------------------------------------------------CC-
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCc--------------------------------------------------cC-
Confidence 77776 456666665555533221110 00
Q ss_pred ccccCccchhhhHHhhhcccccEEEEcCCCCchhhh--HHhhcCCcEEEEecCCCCcccchhchhhhcCCceE-------
Q 003421 607 QATEGVMFSDLYRWAERKAAAKFLEIRGLKSICDGL--KEILNNTEYISWVEPKPMKSLSDLDAGSLVKMEGL------- 677 (821)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~--~~~~~~L~~L~i~~c~~l~~l~~~~~~~l~~L~~L------- 677 (821)
...+..+..+++|++|+++++......+ ...+++|+.|.+.+|.-...+|..... ...+..+
T Consensus 504 --------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 504 --------GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK-QSGKIAANFIAGKR 574 (768)
T ss_dssp --------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT-TTTCBCCSTTCSCE
T ss_pred --------CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc-ccchhhhhcccccc
Confidence 0001122356778888888876543332 355688999999888765566654332 2222211
Q ss_pred --EEecccC--------------------ceec------------cc--ccchhhhhcCcceeecccccccccccccccc
Q 003421 678 --WIARCIE--------------------MESI------------FG--EEKDIELARNLKILWVSNLPKVESLFNHKLQ 721 (821)
Q Consensus 678 --~i~~C~~--------------------l~~l------------~~--~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~ 721 (821)
++.+... +..+ +. .+..++.+++|+.|+++++.--..+|.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~---- 650 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK---- 650 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG----
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH----
Confidence 1111000 0000 00 011234578899999988754446776
Q ss_pred ccccCCCCceEEecCCCCCcccccC-CCcccccccEEEEeccccccccccccccccccccCCcccEEecccccccccccc
Q 003421 722 SVKNLENLKHLHLDCCPRLKCVFAS-PDQIPKRLEVLEIKFCDSLETVYKHSGDEQDECALSTLKKLFLFKLPALTSLGF 800 (821)
Q Consensus 722 ~l~~~~sL~~L~i~~C~~L~~~~p~-~~~l~~~L~~L~i~~C~~L~~i~~~~~~~~~~~~l~~L~~L~l~~cp~L~~l~~ 800 (821)
.+..+++|+.|.++++ ++...+|. -..+ ++|++|+++++.--..+| .....+++|+.|++++++--..+|.
T Consensus 651 ~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~L-~~L~~LdLs~N~l~g~ip------~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 651 EIGSMPYLFILNLGHN-DISGSIPDEVGDL-RGLNILDLSSNKLDGRIP------QAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp GGGGCTTCCEEECCSS-CCCSCCCGGGGGC-TTCCEEECCSSCCEECCC------GGGGGCCCCSEEECCSSEEEEECCS
T ss_pred HHhccccCCEEeCcCC-ccCCCCChHHhCC-CCCCEEECCCCcccCcCC------hHHhCCCCCCEEECcCCcccccCCC
Confidence 6788999999999877 45544553 3567 889999998876555666 3444589999999999876667777
Q ss_pred C--CCCcc--cccCCCC
Q 003421 801 K--IPDAQ--IIKGCPK 813 (821)
Q Consensus 801 ~--~~~L~--~i~~Cp~ 813 (821)
+ +..+. .+.++|.
T Consensus 723 ~~~~~~~~~~~~~gN~~ 739 (768)
T 3rgz_A 723 MGQFETFPPAKFLNNPG 739 (768)
T ss_dssp SSSGGGSCGGGGCSCTE
T ss_pred chhhccCCHHHhcCCch
Confidence 3 44443 3445443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-41 Score=402.46 Aligned_cols=642 Identities=17% Similarity=0.120 Sum_probs=421.9
Q ss_pred CCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCC-Ccccc--cccccccCCCCCCCccEEEcCCCCCCCCcc-c
Q 003421 72 KWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGF-KSLDL--SSKTEKKSEPEKLPMKLLVLRSCNLLNGIG-D 147 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~ 147 (821)
.++.|+.++++.+.+. .++. .|.++++|++|++++|.+ +.+|. .++++++ |++|++++|.+.+..+ .
T Consensus 75 ~L~~L~~l~~~~~~~~-~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~-------L~~L~Ls~n~l~~~~~~~ 145 (768)
T 3rgz_A 75 SLTGLESLFLSNSHIN-GSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG-------LKFLNVSSNTLDFPGKVS 145 (768)
T ss_dssp TCTTCCEEECTTSCEE-ECCC-CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT-------CCEEECCSSEEECCSSCC
T ss_pred ccCcccccCCcCCCcC-CCch-hhccCCCCCEEECCCCcCCCcCCChHHHhCCCC-------CCEEECcCCccCCcCCHH
Confidence 5678888888887764 2322 367899999999999998 56777 8888888 9999999998876553 3
Q ss_pred -ccCCCCccEEeccCCcCCCcCchHh--hhCCCCccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcc
Q 003421 148 -IELLKKLTVLEISGANSVQKIPDKL--LDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRL 224 (821)
Q Consensus 148 -i~~l~~L~~L~l~~~~~~~~lp~~~--~~~l~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L 224 (821)
+.++++|++|++++|...+..|..+ ++++++|++|++++|.++....+..+++|++|++++|.+.+.+|.+..+++|
T Consensus 146 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L 225 (768)
T 3rgz_A 146 GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSAL 225 (768)
T ss_dssp SCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSC
T ss_pred HhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCC
Confidence 3789999999999876555555442 5889999999999999887655788999999999999988888889999999
Q ss_pred cEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCC-CCC
Q 003421 225 EIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPL-FPV 303 (821)
Q Consensus 225 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 303 (821)
++|++++|...+.++ ..++.+++|++|++++|.+.+......+++|++|++++|.....++.. +. .++
T Consensus 226 ~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~----------~~~~~~ 294 (768)
T 3rgz_A 226 QHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDF----------LSGACD 294 (768)
T ss_dssp CEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCC----------SCTTCT
T ss_pred CEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHH----------HHhhcC
Confidence 999999988444444 789999999999999999886433338899999999988644333321 22 358
Q ss_pred CCcEEEecCCCCCCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCC-CCCC-ccccc-cccEE
Q 003421 304 SLSELHLRDCPTLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLK-SLPP-LSNLH-RLRKL 379 (821)
Q Consensus 304 ~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~-~~~l~-~L~~L 379 (821)
+|++|++++|......| .++.+++|+.|++++|.... ......+..+++|+.|++++|.+. .+|. +..++ +|+.|
T Consensus 295 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG-ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE-ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC-cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 99999999997776666 78889999999999998654 233345889999999999999887 6777 77776 89999
Q ss_pred EeecCCCcCcCCC-CCC--CCCcCEEeccCCCCCCcCCC-CCCCCCCCEEEeeCCCCCccCCCccccCCCCCchhhhhcc
Q 003421 380 FLKNCELLEELPK-MNG--LENLEVLDLSGCSKLVEFPK-LKDFPKLELLDISNTGIKVVPSDISVTSSNFTPDEKHRQA 455 (821)
Q Consensus 380 ~l~~~~~~~~l~~-~~~--l~~L~~L~l~~c~~l~~i~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (821)
++++|.+.+.++. +.. +++|++|++++|...+.+|. +.++++|++|++++|.++. ..+. .+..++.
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~--------~l~~l~~ 443 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG--TIPS--------SLGSLSK 443 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES--CCCG--------GGGGCTT
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC--cccH--------HHhcCCC
Confidence 9999988776665 444 78899999999887777777 8889999999999998851 1222 3334567
Q ss_pred cceeeecccccCCCCccccccCc---ceeeccCccccCCCc-ccccccceeccCCcccccCCCCcch---hcccCCCCCC
Q 003421 456 SGVFNLVGSLAKGKKPLILANDG---QIFQSDTGIKADPSE-IAATSSNVVPDKKHRQAHGKKPSVL---VNDGGNSQSN 528 (821)
Q Consensus 456 l~~l~l~~n~~~~~~p~~~~~~~---~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~p~~~---~~L~~L~ls~ 528 (821)
++.+++++|.+.+..|..+...+ .+....+.+.+.++. ...+..++.+++++|.+.+.+|..+ ++|+.|++++
T Consensus 444 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC
Confidence 88899999999888887654433 234444444433332 3334556666667777776666643 3466666666
Q ss_pred CCCc-cCCcccCCCCchhHHHHhhh--c-cCCCCCCcccccccCCCceecCChhhhhhhccChhHHHhhhccccccCCCC
Q 003421 529 DGME-ADPSKISAPKSANEVTDKRR--G-QANGVFTPAESQAKGKPSILTNDGEIVQSLEKNPELKEVRKLEISIPLSPS 604 (821)
Q Consensus 529 ~~~~-~~~~~l~~l~~L~~l~~~~~--~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~~~~l~i~~~~~ 604 (821)
|.+. .+|..+.++++|+.++.... . .+|..+. ... ....+.......
T Consensus 524 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~------------------------~~~-----~~~~~~~~~~~~ 574 (768)
T 3rgz_A 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF------------------------KQS-----GKIAANFIAGKR 574 (768)
T ss_dssp SCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG------------------------TTT-----TCBCCSTTCSCE
T ss_pred CcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh------------------------ccc-----chhhhhcccccc
Confidence 6666 45666666666653332221 1 1111000 000 000000000000
Q ss_pred ccccccCccchhhhHHhhhcccccEEEEcCCCCchhhhHHhhcCCcEEEEecCCCCcccchhchhhhcCCceEEEecccC
Q 003421 605 NEQATEGVMFSDLYRWAERKAAAKFLEIRGLKSICDGLKEILNNTEYISWVEPKPMKSLSDLDAGSLVKMEGLWIARCIE 684 (821)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~l~~L~~L~i~~C~~ 684 (821)
..+....+... .....-..+++.+.. ......++.+..+.+.....-..+|..... +++|+.|+++++.-
T Consensus 575 ~~~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~-l~~L~~LdLs~N~l 644 (768)
T 3rgz_A 575 YVYIKNDGMKK------ECHGAGNLLEFQGIR---SEQLNRLSTRNPCNITSRVYGGHTSPTFDN-NGSMMFLDMSYNML 644 (768)
T ss_dssp EEEEECCSCCT------TCCSSEEEEECTTCC---GGGGGGGGGTCCSCTTSCEEEEECCCSCSS-SBCCCEEECCSSCC
T ss_pred ccccccccccc------ccccccccccccccc---chhhhccccccccccccceecccCchhhhc-cccccEEECcCCcc
Confidence 00000000000 000000011111110 001111122211111111000112333333 77888888887643
Q ss_pred ceecccccchhhhhcCcceeeccccccccccccccccccccCCCCceEEecCCCCCcccccC-CCcccccccEEEEeccc
Q 003421 685 MESIFGEEKDIELARNLKILWVSNLPKVESLFNHKLQSVKNLENLKHLHLDCCPRLKCVFAS-PDQIPKRLEVLEIKFCD 763 (821)
Q Consensus 685 l~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~l~~~~sL~~L~i~~C~~L~~~~p~-~~~l~~~L~~L~i~~C~ 763 (821)
-..+|. .++.+++|+.|+++++.--..+|. .+..+++|+.|+++++ ++....|. ...+ ++|++|++++++
T Consensus 645 ~g~ip~---~l~~l~~L~~L~Ls~N~l~g~ip~----~l~~L~~L~~LdLs~N-~l~g~ip~~l~~l-~~L~~L~ls~N~ 715 (768)
T 3rgz_A 645 SGYIPK---EIGSMPYLFILNLGHNDISGSIPD----EVGDLRGLNILDLSSN-KLDGRIPQAMSAL-TMLTEIDLSNNN 715 (768)
T ss_dssp BSCCCG---GGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSS-CCEECCCGGGGGC-CCCSEEECCSSE
T ss_pred cccCCH---HHhccccCCEEeCcCCccCCCCCh----HHhCCCCCCEEECCCC-cccCcCChHHhCC-CCCCEEECcCCc
Confidence 334433 477888999999988754447777 6778899999999877 45544553 3466 789999998876
Q ss_pred cccccccccccccccccCCcccEEeccccccccccc
Q 003421 764 SLETVYKHSGDEQDECALSTLKKLFLFKLPALTSLG 799 (821)
Q Consensus 764 ~L~~i~~~~~~~~~~~~l~~L~~L~l~~cp~L~~l~ 799 (821)
---.||. .+ .|.++....+.++|.|-..|
T Consensus 716 l~g~iP~-----~~--~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 716 LSGPIPE-----MG--QFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp EEEECCS-----SS--SGGGSCGGGGCSCTEEESTT
T ss_pred ccccCCC-----ch--hhccCCHHHhcCCchhcCCC
Confidence 5556662 11 25555566677777775443
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.3e-37 Score=359.15 Aligned_cols=313 Identities=22% Similarity=0.199 Sum_probs=170.5
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcc-cccccccccCCCCCCCccEEEcCCCCCCCCcc-cccCC
Q 003421 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSL-DLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIELL 151 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~~l 151 (821)
+++++|++++|.+. .++...|.++++|++|++++|.+..+ |..+..+++ |++|++++|.+...++ .++++
T Consensus 25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-------L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM-------LKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTT-------CCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccC-------cCEEECCCCccCccChhhhccC
Confidence 46666666666665 44444456666666666666666444 444556665 6666666666655443 46666
Q ss_pred CCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-c--ccCCcccE
Q 003421 152 KKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-I--NELVRLEI 226 (821)
Q Consensus 152 ~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l--~~l~~L~~ 226 (821)
++|++|++++| .+..+++..|+++++|++|++++|.++.++. ++.+++|++|++++|.+....+. + ..+++|+.
T Consensus 97 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 97 TNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp TTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred CCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 66666666654 3444544434666666666666666655432 55666666666666654443332 2 23456666
Q ss_pred EeecCCCCCCccChhhccCCCCCCEeeccCcCCcCC-----CCcCCCCCCceEeecCccccccccccccCCCCCCCCCCC
Q 003421 227 IDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRL-----PKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLF 301 (821)
Q Consensus 227 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l-----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 301 (821)
|++++|. ++.+++..+..+++|+.|++.++.+..- +.....
T Consensus 176 L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~--------------------------------- 221 (680)
T 1ziw_A 176 LELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN--------------------------------- 221 (680)
T ss_dssp EECTTCC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTT---------------------------------
T ss_pred EECCCCc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhh---------------------------------
Confidence 6666654 4444445555556666666555544310 000012
Q ss_pred CCCCcEEEecCCCCCCCCC-CCCCCC--CcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--ccccccc
Q 003421 302 PVSLSELHLRDCPTLKRLP-HIAGLK--NLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRL 376 (821)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~-~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L 376 (821)
++|++|++++|......+ .+..++ +|+.|++++|.+.. ..+..+..+++|+.|++++|.+.++++ +..+++|
T Consensus 222 -~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (680)
T 1ziw_A 222 -TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV--VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298 (680)
T ss_dssp -SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTC
T ss_pred -ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc--cCcccccCcccccEeeCCCCccCccChhhhcCCCCc
Confidence 345555555554333333 333333 36666666665433 444555666666666666666654433 5666666
Q ss_pred cEEEeecCCCcC-----cCC-----CCCCCCCcCEEeccCCCCCCcCCC-CCCCCCCCEEEeeCCCC
Q 003421 377 RKLFLKNCELLE-----ELP-----KMNGLENLEVLDLSGCSKLVEFPK-LKDFPKLELLDISNTGI 432 (821)
Q Consensus 377 ~~L~l~~~~~~~-----~l~-----~~~~l~~L~~L~l~~c~~l~~i~~-l~~l~~L~~L~l~~~~~ 432 (821)
+.|++++|.... .+| .+..+++|++|++++|...+..+. +..+++|++|++++|.+
T Consensus 299 ~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp CEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred cEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCch
Confidence 666666553222 122 245566666666666654443333 66666666666666653
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.2e-36 Score=346.92 Aligned_cols=310 Identities=19% Similarity=0.257 Sum_probs=171.3
Q ss_pred CCcEEEeecCCCCcc-cccccccccCCCCCCCccEEEcCCCCCCCCc-ccccCCCCccEEeccCCcCCCcCchHhhhCCC
Q 003421 100 QLHALAIFNSGFKSL-DLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIELLKKLTVLEISGANSVQKIPDKLLDEMT 177 (821)
Q Consensus 100 ~L~~L~l~~~~~~~l-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~ 177 (821)
.+++|++++|.++.+ |.++..+++ |++|++++|.+.+.. ..|+++++|++|++++|. +..+++..|++++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~-------L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLIN-------LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPK 105 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTT-------CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTTSSCT
T ss_pred cCcEEEccCCccCcCChhHhccCcc-------ceEEECCCCccceeChhhccCccccCeeeCCCCc-ccccChhhhcccc
Confidence 455666666665444 345555555 666666666555433 345666666666666543 3333333345666
Q ss_pred CccEEEecCCCCCcCc-C-cCCCCcccEEEccCCCCCC-CCcccccCCcccEEeecCCCCCCccChhhccCCCCCC--Ee
Q 003421 178 KLQSLNLSGCQMKFLP-S-LSKLFNLRFLILRDCSSLQ-KLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQ--MI 252 (821)
Q Consensus 178 ~L~~L~l~~~~i~~lp-~-l~~l~~L~~L~l~~~~~~~-~l~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~--~L 252 (821)
+|++|++++|.++.++ . ++.+++|++|++++|.+.. ..|.+..+++|+.|++++|. ++.+++..++.+++|+ .|
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEE
T ss_pred cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEE
Confidence 6666666666666652 3 6666666666666665544 33444446666666666655 4455445566666666 66
Q ss_pred eccCcCCcCCCC-cCCCCCCceEeecCccccccccccccCCCCCCCCCCCCC--CCcEEEecCCCCCCCC--C--CCCCC
Q 003421 253 DLSRTQIKRLPK-FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPV--SLSELHLRDCPTLKRL--P--HIAGL 325 (821)
Q Consensus 253 ~l~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~--~--~l~~~ 325 (821)
++++|.++.++. ......|+.+++.++..+.... ..+. .++.+.+......... + .+..+
T Consensus 185 ~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l 251 (606)
T 3t6q_A 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF-------------KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHH-------------HHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred ecCCCccCccChhHhhhccccccccCCchhHHHHh-------------hhccccchhheechhhccccccccChhHhchh
Confidence 666666665432 3334456666666554221110 0011 1222222221111110 0 11111
Q ss_pred C--CcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC-ccccccccEEEeecCCCcCcCC-CCCCCCCcCE
Q 003421 326 K--NLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP-LSNLHRLRKLFLKNCELLEELP-KMNGLENLEV 401 (821)
Q Consensus 326 ~--~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l~~~~~~~~l~-~~~~l~~L~~ 401 (821)
. +|+.+++++|.... ..+..+..+++|+.|++++|.++.+|. +..+++|++|++++|.+....+ .+..+++|++
T Consensus 252 ~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 252 CEMSVESINLQKHYFFN--ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp GGSEEEEEECTTCCCSS--CCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred hcCceeEEEeecCccCc--cCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 1 56677777766443 455556667777777777777777766 6677777777777776554444 2566677777
Q ss_pred EeccCCCCCCcCCC--CCCCCCCCEEEeeCCCCC
Q 003421 402 LDLSGCSKLVEFPK--LKDFPKLELLDISNTGIK 433 (821)
Q Consensus 402 L~l~~c~~l~~i~~--l~~l~~L~~L~l~~~~~~ 433 (821)
|++++|.....++. +..+++|++|++++|.++
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccc
Confidence 77777665555554 666777777777777664
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-34 Score=340.60 Aligned_cols=389 Identities=16% Similarity=0.134 Sum_probs=276.7
Q ss_pred ccccceecccCcceeecC--CCCCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccc-cccccccCCCCC
Q 003421 52 IALGRITQIDGMIKTICD--PKKWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDL-SSKTEKKSEPEK 128 (821)
Q Consensus 52 ~~l~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~~~~~~ 128 (821)
..++.+...++.++.+.. ...+++|++|++++|.+. .+..+.|.++++|++|++++|.+..+|. .+..+.+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~----- 98 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN----- 98 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT-----
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccCccChhhhccCCC-----
Confidence 566777777777777654 246799999999999997 5555678999999999999999998887 5889998
Q ss_pred CCccEEEcCCCCCCCCc-ccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cC--CCCcccE
Q 003421 129 LPMKLLVLRSCNLLNGI-GDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LS--KLFNLRF 203 (821)
Q Consensus 129 ~~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~--~l~~L~~ 203 (821)
|++|++++|.+.+.+ ..++++++|++|++++|.. ..++...++++++|++|++++|.++.++. +. .+++|++
T Consensus 99 --L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 99 --LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp --CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC-SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred --CCEEECCCCccCccChhHccccCCCCEEECCCCcc-cccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 999999999998776 4689999999999999754 44444445899999999999999998765 43 5689999
Q ss_pred EEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhc---cCCCCCCEeeccCcCCcCCCC--cCCCC--CCceEe
Q 003421 204 LILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDL---SKHQHLQMIDLSRTQIKRLPK--FGYLK--RLSRIS 275 (821)
Q Consensus 204 L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~l~~l~~--~~~l~--~L~~L~ 275 (821)
|++++|.+....|. +..+.+|+.+++.++....... ..+ -..++|+.|++++|.+++.+. +..++ +|+.|+
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT-EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHH-HHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EECCCCcccccChhhhhhhhhhhhhhccccccChhhH-HHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 99999987776665 7888889998888765221111 111 134788888888888876432 55554 388888
Q ss_pred ecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC-CCCCCCCcCEEEecCCCCCC---cccC----hhh
Q 003421 276 IEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP-HIAGLKNLEVLDVSGTSDSK---FAIS----DES 347 (821)
Q Consensus 276 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~---~~~~----~~~ 347 (821)
+++|......+ ..+..+++|++|++++|......+ .+..+++|+.|+++++.... ...+ ...
T Consensus 255 Ls~n~l~~~~~----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 255 LSYNNLNVVGN----------DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp CTTSCCCEECT----------TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred CCCCCcCccCc----------ccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence 88775322111 125567788888888876655555 67788888888887654221 0011 225
Q ss_pred hcCCCCCcEEEecCCCCCCCCC--ccccccccEEEeecCCCc-CcCCC--CC--CCCCcCEEeccCCCCCCcCCC-CCCC
Q 003421 348 FHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLKNCELL-EELPK--MN--GLENLEVLDLSGCSKLVEFPK-LKDF 419 (821)
Q Consensus 348 ~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~~-~~l~~--~~--~l~~L~~L~l~~c~~l~~i~~-l~~l 419 (821)
+..+++|+.|++++|.+.+++. +..+++|++|++++|... ..++. +. ..++|+.|++++|...+..+. +..+
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 6777888888888888887665 778888888888887632 22221 21 125788888888776555555 7788
Q ss_pred CCCCEEEeeCCCCCc-cCCCccccCCCCCchhhhhcccceeeecccccCCCC
Q 003421 420 PKLELLDISNTGIKV-VPSDISVTSSNFTPDEKHRQASGVFNLVGSLAKGKK 470 (821)
Q Consensus 420 ~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~ 470 (821)
++|++|++++|.++. ++. . .+..+..++.+++++|.+.+..
T Consensus 405 ~~L~~L~L~~N~l~~~~~~-~---------~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTG-Q---------EWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp TTCCEEECCSSCCEEECCS-G---------GGTTCTTCCEEECCSCSEEECC
T ss_pred CCCCEEeCCCCcCccccCc-c---------cccCcccccEEecCCCCcceeC
Confidence 888888888888742 211 0 2223345667777777655433
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.5e-36 Score=345.33 Aligned_cols=330 Identities=16% Similarity=0.197 Sum_probs=202.4
Q ss_pred CcceeecCCCCCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcc-cccccccccCCCCCCCccEEEcCCCC
Q 003421 62 GMIKTICDPKKWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSL-DLSSKTEKKSEPEKLPMKLLVLRSCN 140 (821)
Q Consensus 62 ~~~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~~~~~~~~L~~L~l~~~~ 140 (821)
..++.++... .+++++|++++|.+. .++...|.++++|++|++++|.+..+ |..+.++++ |++|++++|.
T Consensus 21 ~~l~~ip~~~-~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~-------L~~L~Ls~n~ 91 (606)
T 3vq2_A 21 QKLSKVPDDI-PSSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH-------LSNLILTGNP 91 (606)
T ss_dssp SCCSSCCTTS-CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT-------CCEEECTTCC
T ss_pred CCcccCCCCC-CCCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhh-------cCEeECCCCc
Confidence 3444444322 267888888888886 55555577888888888888888666 456777777 8888888888
Q ss_pred CCCCc-ccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCc--CcC-cCCCCcccEEEccCCCCCCCCc
Q 003421 141 LLNGI-GDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKF--LPS-LSKLFNLRFLILRDCSSLQKLP 216 (821)
Q Consensus 141 ~~~~~-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~--lp~-l~~l~~L~~L~l~~~~~~~~l~ 216 (821)
+.+.. ..++++++|++|++++| .+..+++..++++++|++|++++|.++. +|. ++++++|++|++++|.+....+
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred ccccChhhcCCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 77763 56788888888888875 4455553335788888888888888774 566 8888888888888877655444
Q ss_pred c-cccCCccc----EEeecCCCCCCccChhhccCCCCCCEeeccCcCCcC--CCC-cCCCCCCceEeecCcccccccccc
Q 003421 217 R-INELVRLE----IIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKR--LPK-FGYLKRLSRISIEGCKRFHNFHEI 288 (821)
Q Consensus 217 ~-l~~l~~L~----~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~--l~~-~~~l~~L~~L~l~~~~~l~~~~~~ 288 (821)
. +..+.+|+ .|++++|. ++.+++..+... +|++|++++|.+.. .+. +..++.|+.+.+...... ....+
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~-~~~~l 247 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK-DERNL 247 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCC-CCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT-TSCCC
T ss_pred hhhhhhhccccccceeeccCCC-cceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccc-cCCcc
Confidence 3 45554443 78888776 666664444443 78888888877652 222 556666666655422100 00000
Q ss_pred ccCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCC
Q 003421 289 KPRDSNTKSKPLFPVSLSELHLRDCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLP 368 (821)
Q Consensus 289 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~ 368 (821)
...+ ...+..+..+ .++.+++....... +..+. +..+++|+.|+++++.+..+|
T Consensus 248 ~~~~-----------------------~~~~~~l~~l-~l~~l~l~~~~~~~-~~~~~-~~~l~~L~~L~l~~~~~~~l~ 301 (606)
T 3vq2_A 248 EIFE-----------------------PSIMEGLCDV-TIDEFRLTYTNDFS-DDIVK-FHCLANVSAMSLAGVSIKYLE 301 (606)
T ss_dssp SCCC-----------------------GGGGTTGGGS-EEEEEEECCCTTCC-GGGGS-CGGGTTCSEEEEESCCCCCCC
T ss_pred cccC-----------------------hHHhhhhhhc-cHhheecccccccc-ccccc-cccCCCCCEEEecCccchhhh
Confidence 0000 0000011111 34455553332222 23333 566666777777776666666
Q ss_pred CccccccccEEEeecCCCcCcCCCCCCCCCcCEEeccCCCCCCcCCCCCCCCCCCEEEeeCCCCC
Q 003421 369 PLSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDLSGCSKLVEFPKLKDFPKLELLDISNTGIK 433 (821)
Q Consensus 369 ~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~i~~l~~l~~L~~L~l~~~~~~ 433 (821)
.+..+++|++|++++|.+ +.+|.+ .+++|++|++++|.....+ .+..+++|++|++++|.++
T Consensus 302 ~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALS 363 (606)
T ss_dssp CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEE
T ss_pred hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccC
Confidence 666666777777777765 566655 6677777777766544433 2556666777777766654
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.5e-34 Score=331.27 Aligned_cols=441 Identities=16% Similarity=0.082 Sum_probs=310.6
Q ss_pred ccccceecccCcceeecC--CCCCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcc-cccccccccCCCCC
Q 003421 52 IALGRITQIDGMIKTICD--PKKWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSL-DLSSKTEKKSEPEK 128 (821)
Q Consensus 52 ~~l~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~~~~~~ 128 (821)
..++.+...++.++.+.. ..++++|++|++++|.+. .++...|.++++|++|++++|.+..+ |..++.+++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~----- 105 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS----- 105 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT-----
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCccc-----
Confidence 567777777788887765 347899999999999997 56566688999999999999999777 788999999
Q ss_pred CCccEEEcCCCCCCCCc-ccccCCCCccEEeccCCcCCC-cCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCccc--
Q 003421 129 LPMKLLVLRSCNLLNGI-GDIELLKKLTVLEISGANSVQ-KIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLR-- 202 (821)
Q Consensus 129 ~~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~-- 202 (821)
|++|++++|.+.+.+ ..++++++|++|++++|...+ .+|..+ +++++|++|++++|.++.++. ++.+++|+
T Consensus 106 --L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~ 182 (606)
T 3vq2_A 106 --LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182 (606)
T ss_dssp --CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC
T ss_pred --CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcceecChhhhhhhhccccc
Confidence 999999999998776 579999999999999975443 567765 899999999999999988654 76666655
Q ss_pred --EEEccCCCCCCCCcccccCCcccEEeecCCCCCCccChhh--------------------------------------
Q 003421 203 --FLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQD-------------------------------------- 242 (821)
Q Consensus 203 --~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~-------------------------------------- 242 (821)
+|++++|.+....+......+|+.|++++|...+...+..
T Consensus 183 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 262 (606)
T 3vq2_A 183 NLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262 (606)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred cceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence 7999888765444444444478888888775321111111
Q ss_pred ------------------ccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCC
Q 003421 243 ------------------LSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVS 304 (821)
Q Consensus 243 ------------------l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (821)
+..+++|+.|+++++.+..+|.+..+++|++|++++|.. ..++. + .+++
T Consensus 263 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~-----------~-~l~~ 329 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPT-----------L-DLPF 329 (606)
T ss_dssp EEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCC-----------C-CCSS
T ss_pred HhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-ccccc-----------C-CCCc
Confidence 445566777777777777666666777777777777654 33331 2 5667
Q ss_pred CcEEEecCCCCCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC-ccccccccEEEeec
Q 003421 305 LSELHLRDCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP-LSNLHRLRKLFLKN 383 (821)
Q Consensus 305 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l~~ 383 (821)
|++|++.+|...... .+..+++|+.|++++|........+..+..+++|+.|++++|.+..+|. +..+++|+.|++++
T Consensus 330 L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~ 408 (606)
T 3vq2_A 330 LKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408 (606)
T ss_dssp CCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTT
T ss_pred cceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCC
Confidence 777777777544433 5556777777777777654422235667777777777777777776666 77777777777777
Q ss_pred CCCcCcCC--CCCCCCCcCEEeccCCCCCCcCCC-CCCCCCCCEEEeeCCCCCc--cCCCccccCCCCCchhhhhcccce
Q 003421 384 CELLEELP--KMNGLENLEVLDLSGCSKLVEFPK-LKDFPKLELLDISNTGIKV--VPSDISVTSSNFTPDEKHRQASGV 458 (821)
Q Consensus 384 ~~~~~~l~--~~~~l~~L~~L~l~~c~~l~~i~~-l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~~l~~ 458 (821)
|++.+..+ .+..+++|++|++++|......|. +..+++|++|++++|.++. ++.. +..+..++.
T Consensus 409 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----------~~~l~~L~~ 477 (606)
T 3vq2_A 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-----------FANTTNLTF 477 (606)
T ss_dssp SEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-----------CTTCTTCCE
T ss_pred CccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh-----------hccCCCCCE
Confidence 77665554 366777777777777766555555 7777777777777777642 2221 122356667
Q ss_pred eeecccccCCCCccccccCcceeeccCccccCCCcccccccceeccCCcccccCCCCcchh---cccCCCCCCCCCccCC
Q 003421 459 FNLVGSLAKGKKPLILANDGQIFQSDTGIKADPSEIAATSSNVVPDKKHRQAHGKKPSVLV---NDGGNSQSNDGMEADP 535 (821)
Q Consensus 459 l~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~---~L~~L~ls~~~~~~~~ 535 (821)
+++++|.+.+..|..+.. ...++.+++++|.+.+..|..+. +|+.|++++|.+..+|
T Consensus 478 L~Ls~n~l~~~~~~~~~~--------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 478 LDLSKCQLEQISWGVFDT--------------------LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp EECTTSCCCEECTTTTTT--------------------CTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEE
T ss_pred EECCCCcCCccChhhhcc--------------------cccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccC
Confidence 777777776655433222 34566777888888887776544 5788888888888888
Q ss_pred cccCCCC-chhH
Q 003421 536 SKISAPK-SANE 546 (821)
Q Consensus 536 ~~l~~l~-~L~~ 546 (821)
..+..++ .|+.
T Consensus 538 ~~~~~l~~~L~~ 549 (606)
T 3vq2_A 538 GILQHFPKSLAF 549 (606)
T ss_dssp SCGGGSCTTCCE
T ss_pred HhHhhhcccCcE
Confidence 7766665 3553
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3e-33 Score=324.36 Aligned_cols=451 Identities=16% Similarity=0.124 Sum_probs=285.7
Q ss_pred cccceecccCcceeecC--CCCCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcc-cccccccccCCCCCC
Q 003421 53 ALGRITQIDGMIKTICD--PKKWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSL-DLSSKTEKKSEPEKL 129 (821)
Q Consensus 53 ~l~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~~~~~~~ 129 (821)
.++.+...++.++.+.. ...+++|++|++++|.+. .+....|.++++|++|++++|.+..+ |..++.+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~------ 106 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA------ 106 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT------
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChhhhccccc------
Confidence 44555555566665532 235667777777777665 34444466677777777777776444 456666666
Q ss_pred CccEEEcCCCCCCCCc-ccccCCCCccEEeccCCcCCCcCc-hHhhhCCCCccEEEecCCCCCcCcC--cCCCCccc--E
Q 003421 130 PMKLLVLRSCNLLNGI-GDIELLKKLTVLEISGANSVQKIP-DKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLR--F 203 (821)
Q Consensus 130 ~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~lp-~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~--~ 203 (821)
|++|++++|.+.+.. ..++++++|++|++++|. +..++ +.+ ..+++|++|++++|.++.++. ++.+++|+ .
T Consensus 107 -L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~ 183 (606)
T 3t6q_A 107 -LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKG-FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183 (606)
T ss_dssp -CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTT-CCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEE
T ss_pred -ccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccc-cCCcccCEEEcccCcccccChhhhhhhcccceeE
Confidence 777777777666542 456666777777776643 33332 222 346667777777666666533 66666666 6
Q ss_pred EEccCCCCCCCCcccccCC----------------------------------------------------cccEEeecC
Q 003421 204 LILRDCSSLQKLPRINELV----------------------------------------------------RLEIIDLSG 231 (821)
Q Consensus 204 L~l~~~~~~~~l~~l~~l~----------------------------------------------------~L~~L~l~~ 231 (821)
|++++|.+....|...... +|+.|++++
T Consensus 184 L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~ 263 (606)
T 3t6q_A 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263 (606)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTT
T ss_pred EecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeec
Confidence 6666665443333211111 567777777
Q ss_pred CCCCCccChhhccCCCCCCEeeccCcCCcCCCC-cCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEe
Q 003421 232 ATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK-FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHL 310 (821)
Q Consensus 232 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 310 (821)
|. ++.+++..++.+++|++|++++|.++.+|. +..+++|++|++++|......+. .+..+++|++|++
T Consensus 264 n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~----------~~~~l~~L~~L~l 332 (606)
T 3t6q_A 264 HY-FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI----------SASNFPSLTHLSI 332 (606)
T ss_dssp CC-CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGG----------CGGGCTTCSEEEC
T ss_pred Cc-cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchh----------hhhccCcCCEEEC
Confidence 65 666666668888888999998888888875 78888888888888753322221 1456778888888
Q ss_pred cCCCCCCCCC--CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--ccccccccEEEeecCCC
Q 003421 311 RDCPTLKRLP--HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLKNCEL 386 (821)
Q Consensus 311 ~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~ 386 (821)
++|.....++ .+..+++|+.|++++|........+..+..+++|+.|++++|.+.++++ +..+++|++|++++|.+
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 8887665555 4778888888888888866522236677888888888888888876544 77888888888888886
Q ss_pred cCcCCC--CCCCCCcCEEeccCCCCCCcCCC-CCCCCCCCEEEeeCCCCCccCCCccccCCCCCchhhhhcccceeeecc
Q 003421 387 LEELPK--MNGLENLEVLDLSGCSKLVEFPK-LKDFPKLELLDISNTGIKVVPSDISVTSSNFTPDEKHRQASGVFNLVG 463 (821)
Q Consensus 387 ~~~l~~--~~~l~~L~~L~l~~c~~l~~i~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~ 463 (821)
....+. +..+++|++|++++|......+. +..+++|++|++++|.++... .+. ...+..+..++.+++++
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~------~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN-IQK------TNSLQTLGRLEILVLSF 485 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE-ECS------SCGGGGCTTCCEEECTT
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc-ccc------chhhccCCCccEEECCC
Confidence 655543 67788888888888876555555 788888888888888875210 000 01344556778888888
Q ss_pred cccCCCCccccccCc---ceeeccCccccCCC-cccccccceeccCCcccccCCCCcc---hhcccCCCCCCCCCc
Q 003421 464 SLAKGKKPLILANDG---QIFQSDTGIKADPS-EIAATSSNVVPDKKHRQAHGKKPSV---LVNDGGNSQSNDGME 532 (821)
Q Consensus 464 n~~~~~~p~~~~~~~---~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~p~~---~~~L~~L~ls~~~~~ 532 (821)
|.+.+..|..+...+ .+....+.+.+..+ .......+ .+++++|.+.+..|.. +++|+.+++++|.+.
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred CccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 888776665443332 23333333332211 12222233 5555556555555543 334555555555443
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=326.55 Aligned_cols=335 Identities=18% Similarity=0.181 Sum_probs=213.4
Q ss_pred eEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcc-cccccccccCCCCCCCccEEEcCCCCCCCCc--ccccCCCC
Q 003421 77 STLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSL-DLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI--GDIELLKK 153 (821)
Q Consensus 77 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~i~~l~~ 153 (821)
+..+.+++++. .+|. -.++|++|++++|.+..+ |.++..+++ |++|++++|.....+ ..++++++
T Consensus 7 ~~~dcs~~~L~-~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~-------L~~LdLs~n~~~~~i~~~~f~~L~~ 74 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQ-------LQLLELGSQYTPLTIDKEAFRNLPN 74 (844)
T ss_dssp EEEEESCCCSS-CCCS----SCTTCCEEEEESCCCCEECSSSCSSCCS-------CSEEEECTTCCCCEECTTTTSSCTT
T ss_pred eEEEccCCCCC-CCCC----CCCCcCEEECCCCcCCccChhHCccccc-------CeEEeCCCCCCccccCHHHhcCCCC
Confidence 35566677775 6664 357788888888888555 567777777 888888888554332 46788888
Q ss_pred ccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCc-CcC---cCCCCcccEEEccCCCCCCCCc--ccccCCcccEE
Q 003421 154 LTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKF-LPS---LSKLFNLRFLILRDCSSLQKLP--RINELVRLEII 227 (821)
Q Consensus 154 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~-lp~---l~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L 227 (821)
|++|++++|. +..+++..|+++++|++|++++|.+++ +|. ++.+++|++|++++|.+....+ .++++++|++|
T Consensus 75 L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 75 LRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp CCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred CCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 8888888754 444433445888888888888888775 332 7788888888888887666443 27888888888
Q ss_pred eecCCCCCCccChhhccCC--CCCCEeeccCcCCcCC-CC-cCCCCC------CceEeecCccccccccccccCCCCCCC
Q 003421 228 DLSGATSLTFFPEQDLSKH--QHLQMIDLSRTQIKRL-PK-FGYLKR------LSRISIEGCKRFHNFHEIKPRDSNTKS 297 (821)
Q Consensus 228 ~l~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~l~~l-~~-~~~l~~------L~~L~l~~~~~l~~~~~~~~~~~~~~~ 297 (821)
++++|. ++...+..+..+ ++|+.|+++.|.+... +. ++.+++ |+.|++++|......+..-.
T Consensus 154 ~Ls~N~-i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~------- 225 (844)
T 3j0a_A 154 DFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS------- 225 (844)
T ss_dssp EEESSC-CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG-------
T ss_pred ECCCCc-CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHH-------
Confidence 888876 444433566655 7888888888877752 21 333333 77777777642222111000
Q ss_pred CCCCCCCCcEEEecCCCCCCC--------CC--CCCC--CCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCC
Q 003421 298 KPLFPVSLSELHLRDCPTLKR--------LP--HIAG--LKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLK 365 (821)
Q Consensus 298 ~~~~~~~L~~L~l~~~~~~~~--------~~--~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 365 (821)
......+++.+.+..+..... .. .+.. .++|+.|++++|.+.. ..+..+..+++|+.|++++|.+.
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~ 303 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS--LNSRVFETLKDLKVLNLAYNKIN 303 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE--ECSCCSSSCCCCCEEEEESCCCC
T ss_pred hhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc--cChhhhhcCCCCCEEECCCCcCC
Confidence 011223566666553211110 00 1222 2567777777776544 45566677777777777777777
Q ss_pred CCCC--ccccccccEEEeecCCCcCcCCC-CCCCCCcCEEeccCCCCCCcCCC--CCCCCCCCEEEeeCCCCCcc
Q 003421 366 SLPP--LSNLHRLRKLFLKNCELLEELPK-MNGLENLEVLDLSGCSKLVEFPK--LKDFPKLELLDISNTGIKVV 435 (821)
Q Consensus 366 ~l~~--~~~l~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~c~~l~~i~~--l~~l~~L~~L~l~~~~~~~~ 435 (821)
.+++ +..+++|++|++++|.+....+. +..+++|+.|++++|.. ..++. +..+++|+.|++++|.++.+
T Consensus 304 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCC-CCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCC-CccChhhhcCCCCCCEEECCCCCCCcc
Confidence 5544 67777777777777765544443 66777777777777643 33333 66777777777777776533
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-32 Score=316.86 Aligned_cols=409 Identities=18% Similarity=0.206 Sum_probs=251.2
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCc-------------cc---------------------cccc
Q 003421 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKS-------------LD---------------------LSSK 119 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------------l~---------------------~~~~ 119 (821)
.+|+.|+++++.+.|.++.. +.++++|++|++++|.+.. +| ..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~-l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGG-GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChH-HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 58999999999999999964 7899999999999996411 11 0000
Q ss_pred c-ccc-----------CCCCCCCccEEEcC--CCCCCCCcccccCCCCccEEeccCCcCCCc-----------------C
Q 003421 120 T-EKK-----------SEPEKLPMKLLVLR--SCNLLNGIGDIELLKKLTVLEISGANSVQK-----------------I 168 (821)
Q Consensus 120 ~-l~~-----------~~~~~~~L~~L~l~--~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~-----------------l 168 (821)
. +.. .......++.+.+. .|++.+.+..++++++|++|++++|...+. +
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 0 000 00000011222221 345555445677777777777777553332 6
Q ss_pred chHhhh--CCCCccEEEecCCCCCc-CcC-cCCCCcccEEEccCCC-CCC-CCcc-cccC------CcccEEeecCCCCC
Q 003421 169 PDKLLD--EMTKLQSLNLSGCQMKF-LPS-LSKLFNLRFLILRDCS-SLQ-KLPR-INEL------VRLEIIDLSGATSL 235 (821)
Q Consensus 169 p~~~~~--~l~~L~~L~l~~~~i~~-lp~-l~~l~~L~~L~l~~~~-~~~-~l~~-l~~l------~~L~~L~l~~~~~~ 235 (821)
|..+ + ++++|++|++++|.+.. +|. ++++++|++|++++|. +.+ .+|. ++.+ ++|+.|++++|. +
T Consensus 240 p~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l 317 (636)
T 4eco_A 240 TEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-L 317 (636)
T ss_dssp TSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-C
T ss_pred chhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-C
Confidence 7665 5 67777777777776543 666 7777777777777776 544 4555 4544 777777777776 4
Q ss_pred CccCh-hhccCCCCCCEeeccCcCCc-CCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCC-CcEEEecC
Q 003421 236 TFFPE-QDLSKHQHLQMIDLSRTQIK-RLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVS-LSELHLRD 312 (821)
Q Consensus 236 ~~~~~-~~l~~l~~L~~L~l~~~~l~-~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~ 312 (821)
+.+|. ..++++++|++|++++|.++ .+|.+..+++|+.|++++|... .++ ..+..+++ |++|++++
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp----------~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIP----------ANFCGFTEQVENLSFAH 386 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECC----------TTSEEECTTCCEEECCS
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-ccc----------HhhhhhcccCcEEEccC
Confidence 56662 16777777777777777777 5666667777777777766422 222 11445556 77777777
Q ss_pred CCCCCCCC-CCCCC--CCcCEEEecCCCCCCcccChhhhc-------CCCCCcEEEecCCCCCCCCC--ccccccccEEE
Q 003421 313 CPTLKRLP-HIAGL--KNLEVLDVSGTSDSKFAISDESFH-------DLDYLRELNLSNTKLKSLPP--LSNLHRLRKLF 380 (821)
Q Consensus 313 ~~~~~~~~-~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~ 380 (821)
|... .+| .+... ++|+.|++++|.+.. ..+..+. .+++|+.|++++|.++.+|. +..+++|++|+
T Consensus 387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS--VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463 (636)
T ss_dssp SCCS-SCCSCCCTTCSSCEEEEECCSSCTTT--TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEE
T ss_pred CcCc-ccchhhhhcccCccCEEECcCCcCCC--cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEE
Confidence 7554 455 33433 367777777777544 4455555 55677777777777777776 45577777777
Q ss_pred eecCCCcCcCCC--CCC-------CCCcCEEeccCCCCCCcCCC-CC--CCCCCCEEEeeCCCCCccCCCccccCCCCCc
Q 003421 381 LKNCELLEELPK--MNG-------LENLEVLDLSGCSKLVEFPK-LK--DFPKLELLDISNTGIKVVPSDISVTSSNFTP 448 (821)
Q Consensus 381 l~~~~~~~~l~~--~~~-------l~~L~~L~l~~c~~l~~i~~-l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 448 (821)
+++|.+. .+|. +.. +++|++|++++|... .+|. +. .+++|++|++++|+++.+|.
T Consensus 464 Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~----------- 530 (636)
T 4eco_A 464 LMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPT----------- 530 (636)
T ss_dssp CCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCC-----------
T ss_pred CCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcCh-----------
Confidence 7777655 4443 211 227777777776544 5665 43 77777777777777763322
Q ss_pred hhhhhcccceeeec------ccccCCCCccccccCcceeeccCccccCCCcccccccceeccCCcccccCCCCcc-hhcc
Q 003421 449 DEKHRQASGVFNLV------GSLAKGKKPLILANDGQIFQSDTGIKADPSEIAATSSNVVPDKKHRQAHGKKPSV-LVND 521 (821)
Q Consensus 449 ~l~~~~~l~~l~l~------~n~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~-~~~L 521 (821)
.+..+..++.|+++ +|.+.+.+|..+.. ...++.+++++|.+ +.+|.. .++|
T Consensus 531 ~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~--------------------l~~L~~L~Ls~N~l-~~ip~~~~~~L 589 (636)
T 4eco_A 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL--------------------CPSLTQLQIGSNDI-RKVNEKITPNI 589 (636)
T ss_dssp GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG--------------------CSSCCEEECCSSCC-CBCCSCCCTTC
T ss_pred hhhcCCCCCEEECCCCcccccCcccccChHHHhc--------------------CCCCCEEECCCCcC-CccCHhHhCcC
Confidence 22334566677774 44455555433222 23345556666666 444442 3457
Q ss_pred cCCCCCCCCCcc
Q 003421 522 GGNSQSNDGMEA 533 (821)
Q Consensus 522 ~~L~ls~~~~~~ 533 (821)
+.|++++|.+..
T Consensus 590 ~~L~Ls~N~l~~ 601 (636)
T 4eco_A 590 SVLDIKDNPNIS 601 (636)
T ss_dssp CEEECCSCTTCE
T ss_pred CEEECcCCCCcc
Confidence 778888777664
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.4e-32 Score=317.17 Aligned_cols=411 Identities=14% Similarity=0.151 Sum_probs=213.5
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEe-ecCCC-Cccccccccc------------------------------
Q 003421 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAI-FNSGF-KSLDLSSKTE------------------------------ 121 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l-~~~~~-~~l~~~~~~l------------------------------ 121 (821)
..|+.|+|+++.+.|.++.. +.++++|++|+| ++|.+ +..|......
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~-l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGG-GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchH-HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 57999999999999999865 789999999999 77654 1111000000
Q ss_pred ----------cc----CCCCCCCccEEEcCC--CCCCCCcccccCCCCccEEeccCCcCCC-----------------cC
Q 003421 122 ----------KK----SEPEKLPMKLLVLRS--CNLLNGIGDIELLKKLTVLEISGANSVQ-----------------KI 168 (821)
Q Consensus 122 ----------~~----~~~~~~~L~~L~l~~--~~~~~~~~~i~~l~~L~~L~l~~~~~~~-----------------~l 168 (821)
.. .......++.+.+.. |.+.+.+..++++++|++|++++|...+ .+
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00 000001122222222 3444433455666666666666544333 15
Q ss_pred chHh-hhCCCCccEEEecCCCCC-cCcC-cCCCCcccEEEccCCC-CCC-CCcc-cccCC-------cccEEeecCCCCC
Q 003421 169 PDKL-LDEMTKLQSLNLSGCQMK-FLPS-LSKLFNLRFLILRDCS-SLQ-KLPR-INELV-------RLEIIDLSGATSL 235 (821)
Q Consensus 169 p~~~-~~~l~~L~~L~l~~~~i~-~lp~-l~~l~~L~~L~l~~~~-~~~-~l~~-l~~l~-------~L~~L~l~~~~~~ 235 (821)
|..+ |.++++|++|++++|.+. .+|. ++++++|++|++++|. +.+ .+|. +..+. +|+.|++++|. +
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-L 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-C
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-C
Confidence 5554 225666666666666533 3555 6666666666666665 333 3443 33332 66666666655 3
Q ss_pred CccCh-hhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCC-CcEEEecCC
Q 003421 236 TFFPE-QDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVS-LSELHLRDC 313 (821)
Q Consensus 236 ~~~~~-~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~ 313 (821)
..+|. ..++++++|++|++++|.++.+|.++.+++|+.|++++|... .++ ..+..+++ |++|++++|
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp----------~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIP----------EDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCC----------TTSCEECTTCCEEECCSS
T ss_pred CccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cch----------HHHhhccccCCEEECcCC
Confidence 45552 155666666666666666665555566666666666555422 221 11334445 666666665
Q ss_pred CCCCCCC-CCCCCC--CcCEEEecCCCCCCcccCh---hhhc--CCCCCcEEEecCCCCCCCCC--ccccccccEEEeec
Q 003421 314 PTLKRLP-HIAGLK--NLEVLDVSGTSDSKFAISD---ESFH--DLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLKN 383 (821)
Q Consensus 314 ~~~~~~~-~l~~~~--~L~~L~l~~~~~~~~~~~~---~~~~--~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~ 383 (821)
... .+| .+.... +|+.|++++|.+.. .++ ..+. .+++|+.|++++|.++.+|. +..+++|+.|++++
T Consensus 630 ~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g--~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGS--EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706 (876)
T ss_dssp CCC-SCCSCCCTTCSSCEEEEECCSSCTTT--TSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS
T ss_pred CCC-cCchhhhccccCCCCEEECcCCcCCC--ccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC
Confidence 433 444 333332 36666666665433 111 1111 22356666666666666555 34556666666666
Q ss_pred CCCcCcCCC-C-C-------CCCCcCEEeccCCCCCCcCCC-CC--CCCCCCEEEeeCCCCCccCCCccccCCCCCchhh
Q 003421 384 CELLEELPK-M-N-------GLENLEVLDLSGCSKLVEFPK-LK--DFPKLELLDISNTGIKVVPSDISVTSSNFTPDEK 451 (821)
Q Consensus 384 ~~~~~~l~~-~-~-------~l~~L~~L~l~~c~~l~~i~~-l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 451 (821)
|.+. .+|. . . ++++|+.|++++|... .+|. +. .+++|+.|++++|.++.+| . .+.
T Consensus 707 N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp---~--------~l~ 773 (876)
T 4ecn_A 707 NLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFP---T--------QPL 773 (876)
T ss_dssp CCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCC---C--------GGG
T ss_pred CcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccc---h--------hhh
Confidence 6543 3333 1 1 1225666666665433 4554 33 5666666666666664321 1 222
Q ss_pred hhcccceeeecc------cccCCCCccccccCcceeeccCccccCCCcccccccceeccCCcccccCCCCcc-hhcccCC
Q 003421 452 HRQASGVFNLVG------SLAKGKKPLILANDGQIFQSDTGIKADPSEIAATSSNVVPDKKHRQAHGKKPSV-LVNDGGN 524 (821)
Q Consensus 452 ~~~~l~~l~l~~------n~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~-~~~L~~L 524 (821)
.++.++.|++++ |.+.+.+|..+.. +..++.+++++|.+ +.+|.. .++|+.|
T Consensus 774 ~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~--------------------L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~L 832 (876)
T 4ecn_A 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITT--------------------CPSLIQLQIGSNDI-RKVDEKLTPQLYIL 832 (876)
T ss_dssp GCTTCCEEECCCCBCTTCCBCCCCCCTTGGG--------------------CSSCCEEECCSSCC-CBCCSCCCSSSCEE
T ss_pred cCCCCCEEECCCCCCcccccccccChHHHhc--------------------CCCCCEEECCCCCC-CccCHhhcCCCCEE
Confidence 334555555544 4444444432222 23344555666666 445543 3457888
Q ss_pred CCCCCCCccC
Q 003421 525 SQSNDGMEAD 534 (821)
Q Consensus 525 ~ls~~~~~~~ 534 (821)
++++|.+..+
T Consensus 833 dLs~N~l~~i 842 (876)
T 4ecn_A 833 DIADNPNISI 842 (876)
T ss_dssp ECCSCTTCEE
T ss_pred ECCCCCCCcc
Confidence 8888877653
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-32 Score=310.56 Aligned_cols=317 Identities=18% Similarity=0.212 Sum_probs=185.4
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCccc-ccccccccCCCCCCCccEEEcCCCCCCCCc-ccccCC
Q 003421 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLD-LSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIELL 151 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~l 151 (821)
+++++|++++|.+. .++...|.++++|++|++++|.+..++ ..+.++++ |++|++++|.+...+ ..++++
T Consensus 28 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~-------L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH-------LSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTT-------CCEEECTTCCCCEECTTTTTTC
T ss_pred ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchh-------CCEEeCcCCcCCccCHhhhcCc
Confidence 45777777777765 444445667777777777777775554 34666666 777777777666544 356667
Q ss_pred CCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCc--CcC-cCCCCcccEEEccCCCCCCCCcc-cccCCcc---
Q 003421 152 KKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKF--LPS-LSKLFNLRFLILRDCSSLQKLPR-INELVRL--- 224 (821)
Q Consensus 152 ~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~--lp~-l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L--- 224 (821)
++|++|++++| .+..++...++++++|++|++++|.++. +|. ++++++|++|++++|.+....+. +..+.+|
T Consensus 100 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~ 178 (570)
T 2z63_A 100 SSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (570)
T ss_dssp TTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTC
T ss_pred ccccccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchh
Confidence 77777777664 4455554334667777777777776664 455 66677777777776655443333 4555555
Q ss_pred -cEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcC--CCC-cCCCCCCceEeecCccccccccccccCCCCCCCCCC
Q 003421 225 -EIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKR--LPK-FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPL 300 (821)
Q Consensus 225 -~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~--l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 300 (821)
+.+++++|. ++.+++..+... +|+.|++++|.... ++. +..++.++...+.... ..
T Consensus 179 ~~~L~l~~n~-l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~------------------~~ 238 (570)
T 2z63_A 179 NLSLDLSLNP-MNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE------------------FR 238 (570)
T ss_dssp CCEEECTTCC-CCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE------------------CC
T ss_pred hhhcccCCCC-ceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccc------------------cc
Confidence 566666665 444443444433 56666666553221 111 3333333333322110 00
Q ss_pred CCCCCcEEEecCCCCCCCCCCCCCCC--CcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC-cccccccc
Q 003421 301 FPVSLSELHLRDCPTLKRLPHIAGLK--NLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP-LSNLHRLR 377 (821)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~ 377 (821)
....++.+ .. . .+..+. .++.+++.++.... +..+..+..+++|+.|+++++.+..+|. +..+ +|+
T Consensus 239 ~~~~l~~~--~~----~---~~~~l~~l~l~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~ 307 (570)
T 2z63_A 239 NEGNLEKF--DK----S---ALEGLCNLTIEEFRLAYLDYYL-DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQ 307 (570)
T ss_dssp CCSSCEEC--CT----T---TTGGGGGSEEEEEEEEETTEEE-SCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCS
T ss_pred Cchhhhhc--ch----h---hhccccccchhhhhhhcchhhh-hhchhhhcCcCcccEEEecCccchhhhhhhccC-Ccc
Confidence 00000000 00 0 111111 34556666553222 3556677777888888888888877777 6666 888
Q ss_pred EEEeecCCCcCcCCCCCCCCCcCEEeccCCCCCCcCCCCCCCCCCCEEEeeCCCCC
Q 003421 378 KLFLKNCELLEELPKMNGLENLEVLDLSGCSKLVEFPKLKDFPKLELLDISNTGIK 433 (821)
Q Consensus 378 ~L~l~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~i~~l~~l~~L~~L~l~~~~~~ 433 (821)
+|++++|.+. .+|. ..+++|+.|++++|......+. ..+++|++|++++|.++
T Consensus 308 ~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~ 360 (570)
T 2z63_A 308 HLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLS 360 (570)
T ss_dssp EEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCB
T ss_pred EEeeccCccc-ccCc-ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccC
Confidence 8888888754 5544 5678888888888765544443 66788888888888775
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-31 Score=314.50 Aligned_cols=453 Identities=18% Similarity=0.154 Sum_probs=269.5
Q ss_pred cccccceecccCcceeecC--CCCCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcc-cccccccccCCCC
Q 003421 51 RIALGRITQIDGMIKTICD--PKKWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSL-DLSSKTEKKSEPE 127 (821)
Q Consensus 51 ~~~l~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~~~~~ 127 (821)
...++.+....+.++.+.. ...+++|+.|++++|...+.++.+.|.++++|++|++++|.+..+ |..+..+.+
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~---- 98 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH---- 98 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS----
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc----
Confidence 3455666666666666542 236778888888888666677666678888888888888888555 677777777
Q ss_pred CCCccEEEcCCCCCCCCc-c--cccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCc-C-cCCC--Cc
Q 003421 128 KLPMKLLVLRSCNLLNGI-G--DIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLP-S-LSKL--FN 200 (821)
Q Consensus 128 ~~~L~~L~l~~~~~~~~~-~--~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp-~-l~~l--~~ 200 (821)
|++|++++|.+.+.. . .++++++|++|++++|...+..+...|+++++|++|++++|.++.+. . +..+ ++
T Consensus 99 ---L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 99 ---LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp ---CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred ---cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 888888888877633 2 27788888888888765444444344578888888888888877643 3 5555 67
Q ss_pred ccEEEccCCCCCCCCcc-cccCCc------ccEEeecCCCCCCccCh---------------------------------
Q 003421 201 LRFLILRDCSSLQKLPR-INELVR------LEIIDLSGATSLTFFPE--------------------------------- 240 (821)
Q Consensus 201 L~~L~l~~~~~~~~l~~-l~~l~~------L~~L~l~~~~~~~~~~~--------------------------------- 240 (821)
|+.|++++|.+....+. +..+.+ |+.|++++|......+.
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 77777777766655544 444443 77777777642222211
Q ss_pred --hhccC--CCCCCEeeccCcCCcCCCC--cCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCC
Q 003421 241 --QDLSK--HQHLQMIDLSRTQIKRLPK--FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCP 314 (821)
Q Consensus 241 --~~l~~--l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 314 (821)
..+.. .++|+.|++++|.+..++. +..+++|+.|++++|..-...+ ..+..+++|++|++++|.
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----------~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD----------EAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT----------TTTTTCSSCCEEEEESCC
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh----------HHhcCCCCCCEEECCCCC
Confidence 01111 2567777777777766432 6667777777777664322111 114556677777777775
Q ss_pred CCCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCCccccccccEEEeecCCCcCcCCC-
Q 003421 315 TLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPK- 392 (821)
Q Consensus 315 ~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~l~~- 392 (821)
.....+ .+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++.++. +++|+.|++++|++. .+|.
T Consensus 326 l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~-~l~~~ 399 (844)
T 3j0a_A 326 LGELYSSNFYGLPKVAYIDLQKNHIAI--IQDQTFKFLEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLV-TLPKI 399 (844)
T ss_dssp CSCCCSCSCSSCTTCCEEECCSCCCCC--CCSSCSCSCCCCCEEEEETCCSCCCSS---CCSCSEEEEESCCCC-CCCCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCCCCc--cChhhhcCCCCCCEEECCCCCCCcccC---CCCcchhccCCCCcc-ccccc
Confidence 544434 56677777777777776543 445566677777777777777665543 555666666666533 3322
Q ss_pred ----------------------CCCCCCcCEEeccCCCCCCcCCC--CCCCCCCCEEEeeCCCCCccCCCccccCCCCCc
Q 003421 393 ----------------------MNGLENLEVLDLSGCSKLVEFPK--LKDFPKLELLDISNTGIKVVPSDISVTSSNFTP 448 (821)
Q Consensus 393 ----------------------~~~l~~L~~L~l~~c~~l~~i~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 448 (821)
+..+++|++|++++|......+. +..+++|+.|++++|.++..+.... ...
T Consensus 400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~-----~~~ 474 (844)
T 3j0a_A 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL-----CWD 474 (844)
T ss_dssp CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCC-----CSS
T ss_pred ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccccc-----chh
Confidence 12344455555544432222111 3334445555555554432111000 001
Q ss_pred hhhhhcccceeeecccccCCCCccccc---cCcceeeccCccccCCCcccccccceeccCCcccccCCCCcchhcccCCC
Q 003421 449 DEKHRQASGVFNLVGSLAKGKKPLILA---NDGQIFQSDTGIKADPSEIAATSSNVVPDKKHRQAHGKKPSVLVNDGGNS 525 (821)
Q Consensus 449 ~l~~~~~l~~l~l~~n~~~~~~p~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~L~~L~ 525 (821)
.+..++.++.|++++|.+.+..|..+. .+..+....+.+..-. ...+...++.+++++|.+.+..|..+.+|+.++
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~ 553 (844)
T 3j0a_A 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS-HNDLPANLEILDISRNQLLAPNPDVFVSLSVLD 553 (844)
T ss_dssp CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCC-CCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEE
T ss_pred hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccC-hhhhhccccEEECCCCcCCCCChhHhCCcCEEE
Confidence 122345666777777777766655433 3333444555555322 222225566677777777777777777777777
Q ss_pred CCCCCCc
Q 003421 526 QSNDGME 532 (821)
Q Consensus 526 ls~~~~~ 532 (821)
+++|.+.
T Consensus 554 l~~Np~~ 560 (844)
T 3j0a_A 554 ITHNKFI 560 (844)
T ss_dssp EEEECCC
T ss_pred ecCCCcc
Confidence 7666543
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=308.07 Aligned_cols=426 Identities=18% Similarity=0.167 Sum_probs=312.2
Q ss_pred ccccceecccCcceeecC--CCCCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCccc-ccccccccCCCCC
Q 003421 52 IALGRITQIDGMIKTICD--PKKWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLD-LSSKTEKKSEPEK 128 (821)
Q Consensus 52 ~~l~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~~~~~~ 128 (821)
..++.+...++.++.+.. ...+++|++|++++|.+. .++.+.|.++++|++|++++|.+..++ ..+..+++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----- 101 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS----- 101 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT-----
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc-----
Confidence 456666666777777753 246889999999999987 666677889999999999999997776 67888888
Q ss_pred CCccEEEcCCCCCCCCcc-cccCCCCccEEeccCCcCCC-cCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcc---
Q 003421 129 LPMKLLVLRSCNLLNGIG-DIELLKKLTVLEISGANSVQ-KIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNL--- 201 (821)
Q Consensus 129 ~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~l~~~~~~~-~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L--- 201 (821)
|++|++++|.+...+. .++++++|++|++++|.... .+|..+ +++++|++|++++|.++.++. ++.+++|
T Consensus 102 --L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~ 178 (570)
T 2z63_A 102 --LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (570)
T ss_dssp --CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTC
T ss_pred --cccccccccccccCCCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCccceecHHHccchhccchh
Confidence 9999999999887664 68999999999999865443 467765 889999999999999988654 7778887
Q ss_pred -cEEEccCCCCCCCCcccccCCcccEEeecCCCC----------------------------------------------
Q 003421 202 -RFLILRDCSSLQKLPRINELVRLEIIDLSGATS---------------------------------------------- 234 (821)
Q Consensus 202 -~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~---------------------------------------------- 234 (821)
+.|++++|.+....+......+|+.|++++|..
T Consensus 179 ~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 258 (570)
T 2z63_A 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred hhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence 889999887665555533333677777766521
Q ss_pred -----------CCccChhhccCCCCCCEeeccCcCCcCCCC-cCCCCCCceEeecCccccccccccccCCCCCCCCCCCC
Q 003421 235 -----------LTFFPEQDLSKHQHLQMIDLSRTQIKRLPK-FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFP 302 (821)
Q Consensus 235 -----------~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 302 (821)
+....+..+..+++|++|+++++.++.+|. +..+ +|++|++.+|... .++ ...+
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~------------~~~l 324 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFP------------TLKL 324 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCC------------BCBC
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccC------------cccc
Confidence 111112445667888888888888888776 5556 8888888877532 222 2356
Q ss_pred CCCcEEEecCCCCCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC-ccccccccEEEe
Q 003421 303 VSLSELHLRDCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP-LSNLHRLRKLFL 381 (821)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l 381 (821)
++|++|++.+|......+. ..+++|+.|++++|........+..+..+++|+.|++++|.+..++. +..+++|+.|++
T Consensus 325 ~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l 403 (570)
T 2z63_A 325 KSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403 (570)
T ss_dssp SSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred cccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEc
Confidence 7888999888865554444 77888999999888765422236678888899999999998887777 888889999999
Q ss_pred ecCCCcCcCC--CCCCCCCcCEEeccCCCCCCcCCC-CCCCCCCCEEEeeCCCCC--ccCCCccccCCCCCchhhhhccc
Q 003421 382 KNCELLEELP--KMNGLENLEVLDLSGCSKLVEFPK-LKDFPKLELLDISNTGIK--VVPSDISVTSSNFTPDEKHRQAS 456 (821)
Q Consensus 382 ~~~~~~~~l~--~~~~l~~L~~L~l~~c~~l~~i~~-l~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~l 456 (821)
++|.+....+ .+..+++|++|++++|......+. +..+++|++|++++|.++ .+|. .+..++.+
T Consensus 404 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~-----------~~~~l~~L 472 (570)
T 2z63_A 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-----------IFTELRNL 472 (570)
T ss_dssp TTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-----------CCTTCTTC
T ss_pred cCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh-----------hhhcccCC
Confidence 9888666554 377888999999998876666666 788899999999988874 2321 22234567
Q ss_pred ceeeecccccCCCCccccccCcceeeccCccccCCCcccccccceeccCCcccccCCCCcc---hhcccCCCCCCCCCc
Q 003421 457 GVFNLVGSLAKGKKPLILANDGQIFQSDTGIKADPSEIAATSSNVVPDKKHRQAHGKKPSV---LVNDGGNSQSNDGME 532 (821)
Q Consensus 457 ~~l~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~---~~~L~~L~ls~~~~~ 532 (821)
+.+++++|.+.+..|..+.. ...++.+++++|.+.+..|.. +++|+.|++++|.+.
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~--------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNS--------------------LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CEEECTTSCCCEECTTTTTT--------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEECCCCccccCChhhhhc--------------------ccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 78888888877655543322 234556667777777766654 345777777777665
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=1.1e-31 Score=307.39 Aligned_cols=196 Identities=14% Similarity=0.189 Sum_probs=113.0
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCccc-ccccccccCCCCCCCccEEEcCCCCCCCCccc-ccCC
Q 003421 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLD-LSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGD-IELL 151 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-i~~l 151 (821)
+++++|++++|.+. .++...|.++++|++|++++|.+..++ ..+..+++ |++|++++|.+.+.++. ++++
T Consensus 26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-------L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS-------LEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTT-------CCEEECTTSCCCSCCHHHHTTC
T ss_pred CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhcccccc-------CCEEECCCCccCccCHHHhccC
Confidence 56666666666665 333334566666666666666665444 45566666 66666666666655543 6666
Q ss_pred CCccEEeccCCcCCC-cCchHhhhCCCCccEEEecCCC-CCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccE
Q 003421 152 KKLTVLEISGANSVQ-KIPDKLLDEMTKLQSLNLSGCQ-MKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEI 226 (821)
Q Consensus 152 ~~L~~L~l~~~~~~~-~lp~~~~~~l~~L~~L~l~~~~-i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~ 226 (821)
++|++|++++|.... ..|.. ++++++|++|++++|. +..+|. +..+++|++|++++|.+.+..|. +..+++|+.
T Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 98 SSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp TTCCEEECTTCCCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCCcEEECCCCcccccchhhh-hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 666666666643222 22333 3666666666666665 445543 66666666666666665554444 566666666
Q ss_pred EeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCC-----CcCCCCCCceEeecCc
Q 003421 227 IDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLP-----KFGYLKRLSRISIEGC 279 (821)
Q Consensus 227 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~-----~~~~l~~L~~L~l~~~ 279 (821)
|+++++. .+.++...+..+++|++|++++|.+++++ ....+++|+.|++.++
T Consensus 177 L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 177 LTLHLSE-SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp EEEECSB-STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred EecccCc-ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence 6666654 34444333445666666666666666532 1233455555555554
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=4.6e-31 Score=305.48 Aligned_cols=347 Identities=18% Similarity=0.258 Sum_probs=270.7
Q ss_pred ccHHHHhcCcCCcEEEeecCCCCc------------------cccccc--ccccCCCCCCCccEEEcCCCCCCCCc-ccc
Q 003421 90 VDEGFLARMKQLHALAIFNSGFKS------------------LDLSSK--TEKKSEPEKLPMKLLVLRSCNLLNGI-GDI 148 (821)
Q Consensus 90 ~~~~~~~~l~~L~~L~l~~~~~~~------------------l~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i 148 (821)
+|. .|.++++|++|++++|.+.. +|..++ ++++ |++|++++|.+.+.. ..+
T Consensus 198 ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~-------L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 198 VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD-------LTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT-------CCEEEEECCTTCSSCCTTT
T ss_pred CCH-HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCC-------CCEEEecCCcCCccChHHH
Confidence 444 37789999999999999976 899988 8988 999999999877655 578
Q ss_pred cCCCCccEEeccCCc-CCC-cCchHhhhCC------CCccEEEecCCCCCcCcC---cCCCCcccEEEccCCCCCCCCcc
Q 003421 149 ELLKKLTVLEISGAN-SVQ-KIPDKLLDEM------TKLQSLNLSGCQMKFLPS---LSKLFNLRFLILRDCSSLQKLPR 217 (821)
Q Consensus 149 ~~l~~L~~L~l~~~~-~~~-~lp~~~~~~l------~~L~~L~l~~~~i~~lp~---l~~l~~L~~L~l~~~~~~~~l~~ 217 (821)
+++++|++|++++|. ..+ .+|..+ +++ ++|++|++++|.++.+|. ++.+++|++|++++|.+.+.+|.
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~ 348 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA 348 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCC
T ss_pred hcCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhh
Confidence 999999999999976 444 688876 555 899999999999999986 88999999999999988777888
Q ss_pred cccCCcccEEeecCCCCCCccChhhccCCCC-CCEeeccCcCCcCCCC-cCCC--CCCceEeecCccccccccccccCCC
Q 003421 218 INELVRLEIIDLSGATSLTFFPEQDLSKHQH-LQMIDLSRTQIKRLPK-FGYL--KRLSRISIEGCKRFHNFHEIKPRDS 293 (821)
Q Consensus 218 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~l~~l~~-~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~ 293 (821)
+..+++|+.|++++|. ++.+| ..+..+++ |++|++++|.++.+|. +..+ ++|+.|++++|......+..-.
T Consensus 349 ~~~l~~L~~L~L~~N~-l~~lp-~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--- 423 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQ-ITEIP-ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD--- 423 (636)
T ss_dssp CEEEEEESEEECCSSE-EEECC-TTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC---
T ss_pred hCCCCCCCEEECCCCc-ccccc-HhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhc---
Confidence 8899999999999987 66777 56888888 9999999999998886 4443 4899999998864433221100
Q ss_pred CCCCCCCCCCCCcEEEecCCCCCCCCC--CCCCCCCcCEEEecCCCCCCcccChhhhcCC-------CCCcEEEecCCCC
Q 003421 294 NTKSKPLFPVSLSELHLRDCPTLKRLP--HIAGLKNLEVLDVSGTSDSKFAISDESFHDL-------DYLRELNLSNTKL 364 (821)
Q Consensus 294 ~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l-------~~L~~L~l~~~~l 364 (821)
........+++|++|++++|... .+| .+..+++|+.|++++|.+.. .....+... ++|+.|++++|.+
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTE--IPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSB--CCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred ccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCC--cCHHHhccccccccccCCccEEECcCCcC
Confidence 00001125668999999998665 555 34568899999999988654 333333333 2899999999999
Q ss_pred CCCCC-cc--ccccccEEEeecCCCcCcCCC-CCCCCCcCEEecc------CCCCCCcCCC-CCCCCCCCEEEeeCCCCC
Q 003421 365 KSLPP-LS--NLHRLRKLFLKNCELLEELPK-MNGLENLEVLDLS------GCSKLVEFPK-LKDFPKLELLDISNTGIK 433 (821)
Q Consensus 365 ~~l~~-~~--~l~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~------~c~~l~~i~~-l~~l~~L~~L~l~~~~~~ 433 (821)
+.+|. +. .+++|+.|++++|++.+ +|. +..+++|++|+++ +|...+.+|. +..+++|++|++++|.++
T Consensus 501 ~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 501 TKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579 (636)
T ss_dssp CBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred CccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC
Confidence 98888 65 89999999999998766 665 7789999999994 4556677777 888999999999999986
Q ss_pred ccCCCccccCCCCCchhhhhcccceeeecccccC
Q 003421 434 VVPSDISVTSSNFTPDEKHRQASGVFNLVGSLAK 467 (821)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~n~~~ 467 (821)
.+|.... +.++.+++++|.+.
T Consensus 580 ~ip~~~~-------------~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 580 KVNEKIT-------------PNISVLDIKDNPNI 600 (636)
T ss_dssp BCCSCCC-------------TTCCEEECCSCTTC
T ss_pred ccCHhHh-------------CcCCEEECcCCCCc
Confidence 5544311 46788999998765
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=4.9e-30 Score=293.72 Aligned_cols=447 Identities=17% Similarity=0.176 Sum_probs=307.1
Q ss_pred ccccceecccCcceeecC--CCCCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCccccc-ccccccCCCCC
Q 003421 52 IALGRITQIDGMIKTICD--PKKWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLS-SKTEKKSEPEK 128 (821)
Q Consensus 52 ~~l~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~~~~~~ 128 (821)
..++.+...++.++.+.. ...+++|++|++++|.+. .++.+.|.++++|++|++++|.+..++.. ++.+++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~----- 99 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS----- 99 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT-----
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCC-----
Confidence 467777777788877743 347899999999999997 55556688999999999999999877764 888888
Q ss_pred CCccEEEcCCCCCCCC--cccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCc-CcC-cCCCCcccEE
Q 003421 129 LPMKLLVLRSCNLLNG--IGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKF-LPS-LSKLFNLRFL 204 (821)
Q Consensus 129 ~~L~~L~l~~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~-lp~-l~~l~~L~~L 204 (821)
|++|++++|.+.+. +..++++++|++|++++|...+.+|...++++++|++|++++|.++. .|. ++.+++|++|
T Consensus 100 --L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 100 --LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp --CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred --CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 99999999998853 36789999999999999877888887667999999999999999987 566 9999999999
Q ss_pred EccCCCCCCCCcc--cccCCcccEEeecCCCCCCcc---ChhhccCCCCCCEeeccCcCCcC-----CC-CcCCCCCCce
Q 003421 205 ILRDCSSLQKLPR--INELVRLEIIDLSGATSLTFF---PEQDLSKHQHLQMIDLSRTQIKR-----LP-KFGYLKRLSR 273 (821)
Q Consensus 205 ~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~l~~-----l~-~~~~l~~L~~ 273 (821)
++++|.. ..++. +..+++|+.|++++|. ++.+ +......+++|+.|+++++.+++ ++ .+..+++|+.
T Consensus 178 ~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 178 TLHLSES-AFLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EEECSBS-TTHHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred ecccCcc-cccchhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 9999864 34454 3679999999999987 4443 21234567899999999998774 22 2567788999
Q ss_pred EeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCC-----C-CCCCCCCcCEEEecCCCCCCcccChhh
Q 003421 274 ISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRL-----P-HIAGLKNLEVLDVSGTSDSKFAISDES 347 (821)
Q Consensus 274 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~-~l~~~~~L~~L~l~~~~~~~~~~~~~~ 347 (821)
+++.+|.... +... .......+..+++++.+.+.++...... + ......+|+.+++++|.+.. ++..
T Consensus 256 l~l~~~~~~~-~~~~---~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~---ip~~ 328 (549)
T 2z81_A 256 VEFDDCTLNG-LGDF---NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL---VPCS 328 (549)
T ss_dssp EEEESCEEEC-CSCC---CCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC---CCHH
T ss_pred cccccccccc-cccc---cccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc---CCHH
Confidence 9998875322 1111 1111122445677788887776432211 0 01223567888888777433 3333
Q ss_pred -hcCCCCCcEEEecCCCCCC-CC---C-ccccccccEEEeecCCCcCcCC---CCCCCCCcCEEeccCCCCCCcCCC-CC
Q 003421 348 -FHDLDYLRELNLSNTKLKS-LP---P-LSNLHRLRKLFLKNCELLEELP---KMNGLENLEVLDLSGCSKLVEFPK-LK 417 (821)
Q Consensus 348 -~~~l~~L~~L~l~~~~l~~-l~---~-~~~l~~L~~L~l~~~~~~~~l~---~~~~l~~L~~L~l~~c~~l~~i~~-l~ 417 (821)
+..+++|+.|++++|.+.+ +| . ++.+++|+.|++++|++....+ .+..+++|++|++++|. +..+|. +.
T Consensus 329 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~ 407 (549)
T 2z81_A 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQ 407 (549)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCC
T ss_pred HHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCChhhc
Confidence 3567788888888887764 22 2 5677788888888876543221 15667788888888764 446666 77
Q ss_pred CCCCCCEEEeeCCCCCccCCCccccCCCCCchhhhhcccceeeecccccCCCCccccccCcceeeccCccccCCCccccc
Q 003421 418 DFPKLELLDISNTGIKVVPSDISVTSSNFTPDEKHRQASGVFNLVGSLAKGKKPLILANDGQIFQSDTGIKADPSEIAAT 497 (821)
Q Consensus 418 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~ 497 (821)
.+++|++|++++|.++.++... ...++.+++++|.+.+.. ..+..++.+....+.+. .++.....
T Consensus 408 ~~~~L~~L~Ls~N~l~~l~~~~-------------~~~L~~L~Ls~N~l~~~~-~~l~~L~~L~Ls~N~l~-~ip~~~~l 472 (549)
T 2z81_A 408 WPEKMRFLNLSSTGIRVVKTCI-------------PQTLEVLDVSNNNLDSFS-LFLPRLQELYISRNKLK-TLPDASLF 472 (549)
T ss_dssp CCTTCCEEECTTSCCSCCCTTS-------------CTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCS-SCCCGGGC
T ss_pred ccccccEEECCCCCcccccchh-------------cCCceEEECCCCChhhhc-ccCChhcEEECCCCccC-cCCCcccC
Confidence 7778888888888776433211 135677777777776632 22233333333444443 23333344
Q ss_pred ccceeccCCcccccCCCCcc---hhcccCCCCCCCCC
Q 003421 498 SSNVVPDKKHRQAHGKKPSV---LVNDGGNSQSNDGM 531 (821)
Q Consensus 498 ~~~~~~~l~~~~~~~~~p~~---~~~L~~L~ls~~~~ 531 (821)
..++.+++++|.+.+..|.. +++|+.|++++|.+
T Consensus 473 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp TTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred ccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 55566666666666666643 33466666666654
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.8e-30 Score=302.15 Aligned_cols=345 Identities=16% Similarity=0.215 Sum_probs=251.7
Q ss_pred ccHHHHhcCcCCcEEEeecCCCCc------------------cccccc--ccccCCCCCCCccEEEcCCCCCCCCc-ccc
Q 003421 90 VDEGFLARMKQLHALAIFNSGFKS------------------LDLSSK--TEKKSEPEKLPMKLLVLRSCNLLNGI-GDI 148 (821)
Q Consensus 90 ~~~~~~~~l~~L~~L~l~~~~~~~------------------l~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i 148 (821)
+|. .|.++++|++|++++|.+.. +|..++ ++++ |++|++++|.+.+.. ..+
T Consensus 440 IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~-------L~~L~Ls~N~l~~~iP~~l 511 (876)
T 4ecn_A 440 ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD-------LTDVELYNCPNMTQLPDFL 511 (876)
T ss_dssp ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT-------CCEEEEESCTTCCSCCGGG
T ss_pred hhH-HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC-------CCEEECcCCCCCccChHHH
Confidence 444 36788888999998888866 888877 8888 889998888876655 468
Q ss_pred cCCCCccEEeccCCc-CCC-cCchHhhhCCC-------CccEEEecCCCCCcCcC---cCCCCcccEEEccCCCCCCCCc
Q 003421 149 ELLKKLTVLEISGAN-SVQ-KIPDKLLDEMT-------KLQSLNLSGCQMKFLPS---LSKLFNLRFLILRDCSSLQKLP 216 (821)
Q Consensus 149 ~~l~~L~~L~l~~~~-~~~-~lp~~~~~~l~-------~L~~L~l~~~~i~~lp~---l~~l~~L~~L~l~~~~~~~~l~ 216 (821)
+++++|++|++++|. ..+ .+|..+ ++++ +|++|++++|.++.+|. ++.+++|++|++++|.+. .+|
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADW-TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHH-HHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred hCCCCCCEEECcCCCCcccccchHHH-HhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 888889999988875 433 577665 4444 88889998888888886 888888889988888766 777
Q ss_pred ccccCCcccEEeecCCCCCCccChhhccCCCC-CCEeeccCcCCcCCCC-cCCCC--CCceEeecCccccccccccccCC
Q 003421 217 RINELVRLEIIDLSGATSLTFFPEQDLSKHQH-LQMIDLSRTQIKRLPK-FGYLK--RLSRISIEGCKRFHNFHEIKPRD 292 (821)
Q Consensus 217 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~l~~l~~-~~~l~--~L~~L~l~~~~~l~~~~~~~~~~ 292 (821)
.+..+++|+.|++++|. +..+| ..+..+++ |++|++++|.++.+|. +..++ +|+.|++++|......+.+..
T Consensus 590 ~~~~L~~L~~L~Ls~N~-l~~lp-~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~-- 665 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQ-IEEIP-EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC-- 665 (876)
T ss_dssp CCCTTSEESEEECCSSC-CSCCC-TTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS--
T ss_pred hhcCCCcceEEECcCCc-cccch-HHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchh--
Confidence 78888888888888887 55777 56888888 8889888888888776 44443 488888888765443332210
Q ss_pred CCCCCCCCCCCCCcEEEecCCCCCCCCC--CCCCCCCcCEEEecCCCCCCcccChhhhcC-------CCCCcEEEecCCC
Q 003421 293 SNTKSKPLFPVSLSELHLRDCPTLKRLP--HIAGLKNLEVLDVSGTSDSKFAISDESFHD-------LDYLRELNLSNTK 363 (821)
Q Consensus 293 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------l~~L~~L~l~~~~ 363 (821)
.......++|+.|++++|... .+| .+..+++|+.|++++|.+.. .....+.. +++|+.|++++|.
T Consensus 666 ---~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~--ip~~~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 666 ---SMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTS--IPENSLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp ---CTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSC--CCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred ---hhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCc--cChHHhccccccccccCCccEEECCCCC
Confidence 000123457888888888655 555 23477888888888887553 22222222 2388888888888
Q ss_pred CCCCCC-cc--ccccccEEEeecCCCcCcCCC-CCCCCCcCEEeccC------CCCCCcCCC-CCCCCCCCEEEeeCCCC
Q 003421 364 LKSLPP-LS--NLHRLRKLFLKNCELLEELPK-MNGLENLEVLDLSG------CSKLVEFPK-LKDFPKLELLDISNTGI 432 (821)
Q Consensus 364 l~~l~~-~~--~l~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~------c~~l~~i~~-l~~l~~L~~L~l~~~~~ 432 (821)
++.+|. +. .+++|+.|++++|.+.+ +|. +..+++|+.|++++ |...+.+|. +.++++|++|++++|.+
T Consensus 740 L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 740 LTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 888887 55 88888888888887665 554 77888888888866 555666776 78888888888888888
Q ss_pred CccCCCccccCCCCCchhhhhcccceeeecccccCC
Q 003421 433 KVVPSDISVTSSNFTPDEKHRQASGVFNLVGSLAKG 468 (821)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~n~~~~ 468 (821)
+.+|.... +.++.|++++|.+..
T Consensus 819 ~~Ip~~l~-------------~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 819 RKVDEKLT-------------PQLYILDIADNPNIS 841 (876)
T ss_dssp CBCCSCCC-------------SSSCEEECCSCTTCE
T ss_pred CccCHhhc-------------CCCCEEECCCCCCCc
Confidence 64443311 367788888887654
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=5.7e-31 Score=299.12 Aligned_cols=349 Identities=15% Similarity=0.159 Sum_probs=236.9
Q ss_pred cCcceeecCCCCCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcc-cccccccccCCCCCCCccEEEcCCC
Q 003421 61 DGMIKTICDPKKWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSL-DLSSKTEKKSEPEKLPMKLLVLRSC 139 (821)
Q Consensus 61 ~~~~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~~~~~~~~L~~L~l~~~ 139 (821)
++.++.++.... +++++|++++|.+. .++...|.++++|++|++++|.+..+ |..+..+++ |++|++++|
T Consensus 9 ~n~l~~ip~~~~-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-------L~~L~Ls~N 79 (520)
T 2z7x_B 9 KNGLIHVPKDLS-QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE-------LEYLDLSHN 79 (520)
T ss_dssp TSCCSSCCCSCC-TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTT-------CCEEECCSS
T ss_pred CCCccccccccc-ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccC-------CCEEecCCC
Confidence 445555553333 78999999999987 56666788999999999999999766 678888888 999999999
Q ss_pred CCCCCcccccCCCCccEEeccCCcCCC-cCchHhhhCCCCccEEEecCCCCCcCcCcCCCCcc--cEEEccCCCC--CCC
Q 003421 140 NLLNGIGDIELLKKLTVLEISGANSVQ-KIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNL--RFLILRDCSS--LQK 214 (821)
Q Consensus 140 ~~~~~~~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~~l~~L~~L~l~~~~i~~lp~l~~l~~L--~~L~l~~~~~--~~~ 214 (821)
.+...+.. .+++|++|++++|...+ .+|..+ +++++|++|++++|.++.. .+..+++| ++|++++|.+ ...
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~~-~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEKS-SVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCGG-GGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhhh-ccCCcceEEEecCcccchh-hccccccceeeEEEeeccccccccc
Confidence 88864444 78999999999865443 356554 8899999999999988762 26677777 9999999877 455
Q ss_pred Ccc-cccCC-cccEEeecCCCCCCccChhhccCCCCCCEeeccCcC-------CcC-CCCcCCCCCCceEeecCcccccc
Q 003421 215 LPR-INELV-RLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQ-------IKR-LPKFGYLKRLSRISIEGCKRFHN 284 (821)
Q Consensus 215 l~~-l~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------l~~-l~~~~~l~~L~~L~l~~~~~l~~ 284 (821)
.|. +..+. ....+++++|...+.++...+..+++|+.|++++|. +.+ ++.++.+++|+.|++.++.....
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence 554 44444 344567777776666666678888999999998875 332 45677888888888876542211
Q ss_pred cc-ccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC-CC-----CCCCCcCEEEecCCCCCCcccChhhhcCC---CCC
Q 003421 285 FH-EIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP-HI-----AGLKNLEVLDVSGTSDSKFAISDESFHDL---DYL 354 (821)
Q Consensus 285 ~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~l---~~L 354 (821)
.. .... ....++|++|++++|...+.+| .+ ..+++|+.++++++.. . .....+..+ .+|
T Consensus 236 ~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~--~p~~~~~~~~~~~~L 304 (520)
T 2z7x_B 236 SFIRILQ--------LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-G--FPQSYIYEIFSNMNI 304 (520)
T ss_dssp HHHHHHH--------HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-C--SCTHHHHHHHHTCCC
T ss_pred HHHHHHH--------HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-e--cchhhhhcccccCce
Confidence 00 0000 0013477888888776655555 34 6677777777777764 2 111233222 467
Q ss_pred cEEEecCCCCCCCCCccccccccEEEeecCCCcCcCCC-CCCCCCcCEEeccCCCCCC--cCCC-CCCCCCCCEEEeeCC
Q 003421 355 RELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPK-MNGLENLEVLDLSGCSKLV--EFPK-LKDFPKLELLDISNT 430 (821)
Q Consensus 355 ~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~c~~l~--~i~~-l~~l~~L~~L~l~~~ 430 (821)
+.|++++|.+..++....+++|++|++++|.+.+.+|. +..+++|++|++++|...+ .+|. +..+++|++|++++|
T Consensus 305 ~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred eEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence 77777777766554345667777777777776654443 6667777777777765443 3333 566777777777777
Q ss_pred CCC
Q 003421 431 GIK 433 (821)
Q Consensus 431 ~~~ 433 (821)
.++
T Consensus 385 ~l~ 387 (520)
T 2z7x_B 385 SVS 387 (520)
T ss_dssp CCB
T ss_pred cCC
Confidence 764
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=288.56 Aligned_cols=421 Identities=14% Similarity=0.116 Sum_probs=296.4
Q ss_pred ccccceecccCcceeecC--CCCCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCC
Q 003421 52 IALGRITQIDGMIKTICD--PKKWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKL 129 (821)
Q Consensus 52 ~~l~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 129 (821)
..++.+...++.+..+.. ...+++|++|++++|.+. .+....|.++++|++|++++|.++.+|.. .+.+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~------ 91 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVN------ 91 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCC------
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCceeecCcc--ccCC------
Confidence 566777777777776642 346889999999999997 45445688999999999999999988876 6777
Q ss_pred CccEEEcCCCCCCCC--cccccCCCCccEEeccCCcCCCcCchHhhhCCCCc--cEEEecCCCC--Cc-CcC-cCCCC-c
Q 003421 130 PMKLLVLRSCNLLNG--IGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKL--QSLNLSGCQM--KF-LPS-LSKLF-N 200 (821)
Q Consensus 130 ~L~~L~l~~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L--~~L~l~~~~i--~~-lp~-l~~l~-~ 200 (821)
|++|++++|.+.+. +..++++++|++|++++|.. .. ..+..+++| ++|++++|.+ .. .|. +..+. .
T Consensus 92 -L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l-~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~ 166 (520)
T 2z7x_B 92 -LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL-EK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166 (520)
T ss_dssp -CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC-CG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEE
T ss_pred -ccEEeccCCccccccchhhhccCCcceEEEecCccc-ch---hhccccccceeeEEEeecccccccccccccccccccc
Confidence 99999999998873 36789999999999998643 33 224778888 9999999988 33 454 66555 3
Q ss_pred ccEEEccCCCCCCCCcc--cccCCcccEEeecCCC-------CCCccChhhccCCCCCCEeeccCcCCcC-----CCCcC
Q 003421 201 LRFLILRDCSSLQKLPR--INELVRLEIIDLSGAT-------SLTFFPEQDLSKHQHLQMIDLSRTQIKR-----LPKFG 266 (821)
Q Consensus 201 L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~-------~~~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~~~ 266 (821)
...+++++|...+.++. +..+++|+.+++++|. ..+.+ ..++.+++|+.|+++++.+.. ++...
T Consensus 167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL--AKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH--HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch--hhhccccchhhccccccccCHHHHHHHHHHh
Confidence 44567788877776665 6889999999999875 12222 257889999999999887764 12222
Q ss_pred CCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC--CCCCC---CCcCEEEecCCCCCCc
Q 003421 267 YLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP--HIAGL---KNLEVLDVSGTSDSKF 341 (821)
Q Consensus 267 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~~---~~L~~L~l~~~~~~~~ 341 (821)
..++|++|++++|.....++..- .......+++|+.+++.++.. .+| .+..+ .+|+.|++++|....
T Consensus 245 ~~~~L~~L~l~~n~l~~~~p~~~-----~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~- 316 (520)
T 2z7x_B 245 WHTTVWYFSISNVKLQGQLDFRD-----FDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH- 316 (520)
T ss_dssp HTSSCSEEEEEEEEEESCCCCCC-----CCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC-
T ss_pred hhCcccEEEeecccccCccccch-----hhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc-
Confidence 34689999999886433333210 000015678889999998866 444 22222 579999999988554
Q ss_pred ccChhhhcCCCCCcEEEecCCCCCC-CCC-ccccccccEEEeecCCCcC--cCCC-CCCCCCcCEEeccCCCCCCcCCC-
Q 003421 342 AISDESFHDLDYLRELNLSNTKLKS-LPP-LSNLHRLRKLFLKNCELLE--ELPK-MNGLENLEVLDLSGCSKLVEFPK- 415 (821)
Q Consensus 342 ~~~~~~~~~l~~L~~L~l~~~~l~~-l~~-~~~l~~L~~L~l~~~~~~~--~l~~-~~~l~~L~~L~l~~c~~l~~i~~- 415 (821)
.. .+..+++|+.|++++|.+++ +|. +..+++|+.|++++|++.+ .+|. +..+++|++|++++|.....+|.
T Consensus 317 ~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 317 ML---CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp CC---CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred cc---chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence 11 12578899999999999886 555 8899999999999998664 3333 77889999999999876665665
Q ss_pred -CCCCCCCCEEEeeCCCCCccCCCccccCCCCCchhhhhcccceeeecccccCCCCccccccCcceeeccCccccCCCcc
Q 003421 416 -LKDFPKLELLDISNTGIKVVPSDISVTSSNFTPDEKHRQASGVFNLVGSLAKGKKPLILANDGQIFQSDTGIKADPSEI 494 (821)
Q Consensus 416 -l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~ 494 (821)
+..+++|++|++++|.++. ..+.. + ...++.+++++|.+. .+|..+...
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~--~~~~~--------l--~~~L~~L~Ls~N~l~-~ip~~~~~l----------------- 443 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTD--TIFRC--------L--PPRIKVLDLHSNKIK-SIPKQVVKL----------------- 443 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCG--GGGGS--------C--CTTCCEEECCSSCCC-CCCGGGGGC-----------------
T ss_pred hhccCccCCEEECcCCCCCc--chhhh--------h--cccCCEEECCCCccc-ccchhhhcC-----------------
Confidence 7888999999999999842 11110 0 156788999998887 455433222
Q ss_pred cccccceeccCCcccccCCCCc---chhcccCCCCCCCCCc
Q 003421 495 AATSSNVVPDKKHRQAHGKKPS---VLVNDGGNSQSNDGME 532 (821)
Q Consensus 495 ~~~~~~~~~~l~~~~~~~~~p~---~~~~L~~L~ls~~~~~ 532 (821)
..++.+++++|.+.+..+. .+++|+.|++++|.+.
T Consensus 444 ---~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 444 ---EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp ---TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ---CCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence 2344555566655532222 1334666666666554
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=9.8e-29 Score=275.97 Aligned_cols=347 Identities=20% Similarity=0.289 Sum_probs=276.7
Q ss_pred CCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCC
Q 003421 72 KWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELL 151 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l 151 (821)
.+++++.|++.++.+. .++. +..+++|++|++++|.+..++. +..+++ |++|++++|.+.+.++ ++++
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~-------L~~L~l~~n~l~~~~~-~~~l 111 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTK-------LVDILMNNNQIADITP-LANL 111 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTT-------CCEEECCSSCCCCCGG-GTTC
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh-hhcccc-------CCEEECCCCccccChh-hcCC
Confidence 3568899999998886 5553 6789999999999999988876 788888 9999999998887655 8899
Q ss_pred CCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcccEEeecC
Q 003421 152 KKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSG 231 (821)
Q Consensus 152 ~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~ 231 (821)
++|++|++++| .+..++. +.++++|++|++++|.+..++.++.+++|++|+++++ ...++.+..+++|+.|++++
T Consensus 112 ~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 112 TNLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ--VTDLKPLANLTTLERLDISS 186 (466)
T ss_dssp TTCCEEECCSS-CCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEES--CCCCGGGTTCTTCCEEECCS
T ss_pred CCCCEEECCCC-CCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCc--ccCchhhccCCCCCEEECcC
Confidence 99999999985 5666665 5899999999999999888877889999999999743 33455588899999999998
Q ss_pred CCCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEec
Q 003421 232 ATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLR 311 (821)
Q Consensus 232 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 311 (821)
|. ++.++ .+..+++|++|++++|.+..++.++.+++|+.|++++|.. ..++. +..+++|++|+++
T Consensus 187 n~-l~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l-~~~~~-----------l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 187 NK-VSDIS--VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL-KDIGT-----------LASLTNLTDLDLA 251 (466)
T ss_dssp SC-CCCCG--GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCC-CCCGG-----------GGGCTTCSEEECC
T ss_pred Cc-CCCCh--hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCc-ccchh-----------hhcCCCCCEEECC
Confidence 87 66654 4788999999999999999887788899999999988752 22221 4567889999999
Q ss_pred CCCCCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCCccccccccEEEeecCCCcCcCC
Q 003421 312 DCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELP 391 (821)
Q Consensus 312 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~l~ 391 (821)
+|.... .+.+..+++|+.|++++|.... . +. +..+++|+.|++++|.+.+++.+..+++|+.|++++|++.+..
T Consensus 252 ~n~l~~-~~~~~~l~~L~~L~l~~n~l~~--~-~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~- 325 (466)
T 1o6v_A 252 NNQISN-LAPLSGLTKLTELKLGANQISN--I-SP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS- 325 (466)
T ss_dssp SSCCCC-CGGGTTCTTCSEEECCSSCCCC--C-GG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG-
T ss_pred CCcccc-chhhhcCCCCCEEECCCCccCc--c-cc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCch-
Confidence 986544 3448888999999999988655 2 22 7788999999999999988888888999999999999865544
Q ss_pred CCCCCCCcCEEeccCCCCCCcCCCCCCCCCCCEEEeeCCCCCccCCCccccCCCCCchhhhhcccceeeecccccCCC
Q 003421 392 KMNGLENLEVLDLSGCSKLVEFPKLKDFPKLELLDISNTGIKVVPSDISVTSSNFTPDEKHRQASGVFNLVGSLAKGK 469 (821)
Q Consensus 392 ~~~~l~~L~~L~l~~c~~l~~i~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~n~~~~~ 469 (821)
.+..+++|++|++++|. +..++.+..+++|++|++++|+++..+. +..++.++.+++++|.+.+.
T Consensus 326 ~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~------------~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 326 PVSSLTKLQRLFFYNNK-VSDVSSLANLTNINWLSAGHNQISDLTP------------LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp GGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCBCGG------------GTTCTTCCEEECCCEEEECC
T ss_pred hhccCccCCEeECCCCc-cCCchhhccCCCCCEEeCCCCccCccch------------hhcCCCCCEEeccCCcccCC
Confidence 47788999999999875 4445558889999999999998853321 22345677888999888773
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.9e-28 Score=273.62 Aligned_cols=346 Identities=19% Similarity=0.257 Sum_probs=288.8
Q ss_pred ccccceecccCcceeecCCCCCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCc
Q 003421 52 IALGRITQIDGMIKTICDPKKWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPM 131 (821)
Q Consensus 52 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L 131 (821)
..++.+...+..+..+.....+++|++|++++|.+. .++. |.++++|++|++++|.+..++. +..+++ |
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~-------L 114 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP-LANLTN-------L 114 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTT-------C
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh-hcCCCC-------C
Confidence 456666666667777766667899999999999997 4444 8899999999999999988887 888888 9
Q ss_pred cEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcCcCCCCcccEEEccCCCC
Q 003421 132 KLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSS 211 (821)
Q Consensus 132 ~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~ 211 (821)
++|++++|.+.+.++ +.++++|++|++++| .+..++. ++.+++|++|++. +.+..++.+..+++|++|++++|.+
T Consensus 115 ~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~-~~~~~~~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 115 TGLTLFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKV 189 (466)
T ss_dssp CEEECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEE-ESCCCCGGGTTCTTCCEEECCSSCC
T ss_pred CEEECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecC-CcccCchhhccCCCCCEEECcCCcC
Confidence 999999999887544 899999999999986 4556664 5899999999996 5666666699999999999999875
Q ss_pred CCCCcccccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccC
Q 003421 212 LQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPR 291 (821)
Q Consensus 212 ~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 291 (821)
..++.+..+++|+.|++++|. +..+++ ++.+++|++|++++|.++.++.+..+++|+.|++++|..... +.
T Consensus 190 -~~~~~l~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-~~---- 260 (466)
T 1o6v_A 190 -SDISVLAKLTNLESLIATNNQ-ISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-AP---- 260 (466)
T ss_dssp -CCCGGGGGCTTCSEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC-GG----
T ss_pred -CCChhhccCCCCCEEEecCCc-cccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccc-hh----
Confidence 445668999999999999987 555543 778999999999999999998899999999999999853221 11
Q ss_pred CCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCCcc
Q 003421 292 DSNTKSKPLFPVSLSELHLRDCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLS 371 (821)
Q Consensus 292 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~ 371 (821)
+..+++|++|++++|.... ++.+..+++|+.|++++|.... ..+ +..+++|+.|++++|.+++++++.
T Consensus 261 -------~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~--~~~--~~~l~~L~~L~L~~n~l~~~~~~~ 328 (466)
T 1o6v_A 261 -------LSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQLED--ISP--ISNLKNLTYLTLYFNNISDISPVS 328 (466)
T ss_dssp -------GTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCSC--CGG--GGGCTTCSEEECCSSCCSCCGGGG
T ss_pred -------hhcCCCCCEEECCCCccCc-cccccCCCccCeEEcCCCcccC--chh--hcCCCCCCEEECcCCcCCCchhhc
Confidence 4567899999999986544 4458899999999999998655 222 788999999999999999888888
Q ss_pred ccccccEEEeecCCCcCcCCCCCCCCCcCEEeccCCCCCCcCCCCCCCCCCCEEEeeCCCCCccC
Q 003421 372 NLHRLRKLFLKNCELLEELPKMNGLENLEVLDLSGCSKLVEFPKLKDFPKLELLDISNTGIKVVP 436 (821)
Q Consensus 372 ~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~i~~l~~l~~L~~L~l~~~~~~~~~ 436 (821)
.+++|+.|++++|++. .++.+..+++|+.|++++|...+..| +..+++|+.|++++|.++..|
T Consensus 329 ~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVS-DVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp GCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCC
T ss_pred cCccCCEeECCCCccC-CchhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCc
Confidence 9999999999999754 45678899999999999987665555 889999999999999987443
No 23
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=4.3e-28 Score=268.00 Aligned_cols=393 Identities=19% Similarity=0.171 Sum_probs=231.9
Q ss_pred CCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCC-CcccccccccccC------CCCCCCccEEEcCCCCCCCC
Q 003421 72 KWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGF-KSLDLSSKTEKKS------EPEKLPMKLLVLRSCNLLNG 144 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~~~~~~l~~~------~~~~~~L~~L~l~~~~~~~~ 144 (821)
+...++.|++++|.+ +.+|.+ +.++++|++|++++|.+ +.+|..++.+.+. .+....+++|++++|.+.+.
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred ccccchhhhcccCch-hhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 346888999999988 688866 58899999999999888 5788888877650 00001138899998887765
Q ss_pred cccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcc
Q 003421 145 IGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRL 224 (821)
Q Consensus 145 ~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L 224 (821)
+. + .++|++|++++| .+..+|. .+.+|++|++++|.++.+|.+. ++|++|++++|.+.. +|.+..+++|
T Consensus 87 p~-~--~~~L~~L~l~~n-~l~~lp~----~~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~-lp~~~~l~~L 155 (454)
T 1jl5_A 87 PE-L--PPHLESLVASCN-SLTELPE----LPQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEK-LPELQNSSFL 155 (454)
T ss_dssp CS-C--CTTCSEEECCSS-CCSSCCC----CCTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSS-CCCCTTCTTC
T ss_pred CC-C--cCCCCEEEccCC-cCCcccc----ccCCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCC-CcccCCCCCC
Confidence 43 2 468999999875 4555774 3478999999999888877532 689999999887664 7788889999
Q ss_pred cEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCC
Q 003421 225 EIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVS 304 (821)
Q Consensus 225 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (821)
++|++++|. ++.+|. . ..+|++|++++|.++.+|.++.+++|+.|++++|.. ..++ ..+++
T Consensus 156 ~~L~l~~N~-l~~lp~-~---~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l-~~l~-------------~~~~~ 216 (454)
T 1jl5_A 156 KIIDVDNNS-LKKLPD-L---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL-KKLP-------------DLPLS 216 (454)
T ss_dssp CEEECCSSC-CSCCCC-C---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC-SSCC-------------CCCTT
T ss_pred CEEECCCCc-CcccCC-C---cccccEEECcCCcCCcCccccCCCCCCEEECCCCcC-CcCC-------------CCcCc
Confidence 999999886 666662 2 358899999999998888888899999999988752 2222 12358
Q ss_pred CcEEEecCCCCCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCCccccccccEEEeecC
Q 003421 305 LSELHLRDCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNC 384 (821)
Q Consensus 305 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~ 384 (821)
|++|++++|... .+|.++.+++|+.|++++|.... ++. .+++|+.|++++|.++++|.. +++|+.|++++|
T Consensus 217 L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~---l~~---~~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N 287 (454)
T 1jl5_A 217 LESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT---LPD---LPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSEN 287 (454)
T ss_dssp CCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS---CCS---CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSS
T ss_pred ccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc---ccc---cccccCEEECCCCcccccCcc--cCcCCEEECcCC
Confidence 888898888544 67778888889999998887554 222 237888888888888887762 377888888888
Q ss_pred CCcCcCCCCCCCCCcCEEeccCCCCCCcCCCCCCC-CCCCEEEeeCCCCCccCCCccccCCCCCchhhhhcccceeeecc
Q 003421 385 ELLEELPKMNGLENLEVLDLSGCSKLVEFPKLKDF-PKLELLDISNTGIKVVPSDISVTSSNFTPDEKHRQASGVFNLVG 463 (821)
Q Consensus 385 ~~~~~l~~~~~l~~L~~L~l~~c~~l~~i~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~ 463 (821)
.+.+ ++.+ .++|+.|++++|... .++. + ++|++|++++|+++.+|.. ...++.+++++
T Consensus 288 ~l~~-l~~~--~~~L~~L~l~~N~l~-~i~~---~~~~L~~L~Ls~N~l~~lp~~--------------~~~L~~L~L~~ 346 (454)
T 1jl5_A 288 IFSG-LSEL--PPNLYYLNASSNEIR-SLCD---LPPSLEELNVSNNKLIELPAL--------------PPRLERLIASF 346 (454)
T ss_dssp CCSE-ESCC--CTTCCEEECCSSCCS-EECC---CCTTCCEEECCSSCCSCCCCC--------------CTTCCEEECCS
T ss_pred ccCc-ccCc--CCcCCEEECcCCcCC-cccC---CcCcCCEEECCCCcccccccc--------------CCcCCEEECCC
Confidence 7443 3322 257777777776432 3332 3 3677777777777643332 14566667777
Q ss_pred cccCCCCccccccCcceeeccCcccc--CCCcccccccceeccCCcccccCCCCcchhcccCCCCCCCCCccC
Q 003421 464 SLAKGKKPLILANDGQIFQSDTGIKA--DPSEIAATSSNVVPDKKHRQAHGKKPSVLVNDGGNSQSNDGMEAD 534 (821)
Q Consensus 464 n~~~~~~p~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~L~~L~ls~~~~~~~ 534 (821)
|.+.. +|..+...+.+....+.+.+ .++. .+.++..|.+.|.+|..+++|+.|++++|.+..+
T Consensus 347 N~l~~-lp~~l~~L~~L~L~~N~l~~l~~ip~-------~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~ 411 (454)
T 1jl5_A 347 NHLAE-VPELPQNLKQLHVEYNPLREFPDIPE-------SVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411 (454)
T ss_dssp SCCSC-CCCCCTTCCEEECCSSCCSSCCCCCT-------TCCEEECCC-------------------------
T ss_pred Ccccc-ccchhhhccEEECCCCCCCcCCCChH-------HHHhhhhcccccccccccCcCCEEECCCCcCCcc
Confidence 66663 44333333333334444433 2211 1223445666777777778899999999988853
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=3.3e-28 Score=271.52 Aligned_cols=347 Identities=19% Similarity=0.193 Sum_probs=209.4
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCC-cc-cccccccccCCCCCCCccEEEcCCCCCCCCc-ccccC
Q 003421 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFK-SL-DLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIEL 150 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~ 150 (821)
+++++|++++|.+. .+....|.++++|++|++++|.+. .+ +..+..+++ |++|++++|.+.+.. ..+++
T Consensus 30 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~-------L~~L~Ls~n~l~~~~~~~~~~ 101 (455)
T 3v47_A 30 AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS-------LIILKLDYNQFLQLETGAFNG 101 (455)
T ss_dssp TTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTT-------CCEEECTTCTTCEECTTTTTT
T ss_pred CccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECccccccccc-------CCEEeCCCCccCccChhhccC
Confidence 68999999999987 454455788999999999999884 55 456888888 999999999987764 57889
Q ss_pred CCCccEEeccCCcCCCcCch-HhhhCCCCccEEEecCCCCCcC-cC--cCCCCcccEEEccCCCCCCCCcc-cccC--Cc
Q 003421 151 LKKLTVLEISGANSVQKIPD-KLLDEMTKLQSLNLSGCQMKFL-PS--LSKLFNLRFLILRDCSSLQKLPR-INEL--VR 223 (821)
Q Consensus 151 l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~i~~l-p~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l--~~ 223 (821)
+++|++|++++|...+.+|. ..++.+++|++|++++|.++.+ |. +..+++|++|++++|.+....+. +..+ .+
T Consensus 102 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181 (455)
T ss_dssp CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCE
T ss_pred cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccc
Confidence 99999999998754443443 3358899999999999999886 54 78899999999999987776665 5544 78
Q ss_pred ccEEeecCCCCCCccChhh--------ccCCCCCCEeeccCcCCcCC-CC----cCCCCCCceEeecCcccccccccccc
Q 003421 224 LEIIDLSGATSLTFFPEQD--------LSKHQHLQMIDLSRTQIKRL-PK----FGYLKRLSRISIEGCKRFHNFHEIKP 290 (821)
Q Consensus 224 L~~L~l~~~~~~~~~~~~~--------l~~l~~L~~L~l~~~~l~~l-~~----~~~l~~L~~L~l~~~~~l~~~~~~~~ 290 (821)
|+.|++++|. +..++... +..+++|++|++++|.++.. +. ....++|+.|+++++...........
T Consensus 182 L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 182 FTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred ccccccccCc-ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 9999999887 55554322 33567899999999988752 21 22346788888877653322111100
Q ss_pred CCCCCCCCC--CCCCCCcEEEecCCCCCCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCC
Q 003421 291 RDSNTKSKP--LFPVSLSELHLRDCPTLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSL 367 (821)
Q Consensus 291 ~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 367 (821)
........+ ...++|++|++++|......+ .+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++++
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~ 338 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK--IDDNAFWGLTHLLKLNLSQNFLGSI 338 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc--cChhHhcCcccCCEEECCCCccCCc
Confidence 000000000 012344455554444333333 34444444444444444332 3333444444444444444444433
Q ss_pred CC--ccccccccEEEeecCCCcCcCCC-CCCCCCcCEEeccCCCCCCcCCC--CCCCCCCCEEEeeCCCC
Q 003421 368 PP--LSNLHRLRKLFLKNCELLEELPK-MNGLENLEVLDLSGCSKLVEFPK--LKDFPKLELLDISNTGI 432 (821)
Q Consensus 368 ~~--~~~l~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~c~~l~~i~~--l~~l~~L~~L~l~~~~~ 432 (821)
++ +..+++|++|++++|++.+..+. +..+++|++|++++|... .++. +..+++|++|++++|++
T Consensus 339 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCCc
Confidence 32 44444444444444443333222 444444444444443322 2222 34444444444444444
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=6e-28 Score=259.05 Aligned_cols=304 Identities=22% Similarity=0.271 Sum_probs=170.1
Q ss_pred cCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCC
Q 003421 97 RMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEM 176 (821)
Q Consensus 97 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l 176 (821)
.+++|++|+++++.+..++. +..+++ |++|++++|.+.+.++ +..+++|++|++++| .+..+|. +..+
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~-------L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~--~~~l 109 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTN-------LEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDISA--LQNL 109 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTT-------CCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GTTC
T ss_pred hcccccEEEEeCCccccchh-hhhcCC-------ccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCchH--HcCC
Confidence 34555555555555544443 444444 5555555555544333 555555555555553 3334432 3555
Q ss_pred CCccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccC
Q 003421 177 TKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSR 256 (821)
Q Consensus 177 ~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 256 (821)
++|++|++++|.+..++.+..+++|++|++++|.....++.+..+++|+.|++++|. +..++. +..+++|++|++++
T Consensus 110 ~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNY 186 (347)
T ss_dssp TTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTT
T ss_pred CcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccC
Confidence 555555555555555555555555555555555544445555555556666655554 333331 55555666666666
Q ss_pred cCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcCEEEecCC
Q 003421 257 TQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLPHIAGLKNLEVLDVSGT 336 (821)
Q Consensus 257 ~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~ 336 (821)
|.++.++.+..+++|+.++++++.... .+. +..+++|++|++++|... .++.+..+++|+.|++++|
T Consensus 187 n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~-----------~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 187 NQIEDISPLASLTSLHYFTAYVNQITD-ITP-----------VANMTRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTN 253 (347)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCCC-CGG-----------GGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSS
T ss_pred CcccccccccCCCccceeecccCCCCC-Cch-----------hhcCCcCCEEEccCCccC-CCcchhcCCCCCEEECCCC
Confidence 655555555555555555555542111 100 223455666666665333 2333666777777777777
Q ss_pred CCCCcccChhhhcCCCCCcEEEecCCCCCCCCCccccccccEEEeecCCCcCcCCC-CCCCCCcCEEeccCCCCCCcCCC
Q 003421 337 SDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPK-MNGLENLEVLDLSGCSKLVEFPK 415 (821)
Q Consensus 337 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~c~~l~~i~~ 415 (821)
.+.. + ..+..+++|+.|++++|.+++++.+..+++|+.|++++|++....+. +..+++|++|++++|+.....|
T Consensus 254 ~l~~---~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~- 328 (347)
T 4fmz_A 254 QISD---I-NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP- 328 (347)
T ss_dssp CCCC---C-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-
T ss_pred ccCC---C-hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-
Confidence 6443 1 34666777777777777777765567777777777777765544433 5667777777777766433333
Q ss_pred CCCCCCCCEEEeeCCCCC
Q 003421 416 LKDFPKLELLDISNTGIK 433 (821)
Q Consensus 416 l~~l~~L~~L~l~~~~~~ 433 (821)
+..+++|++|++++|.++
T Consensus 329 ~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEESSSCC---
T ss_pred hhhhhccceeehhhhccc
Confidence 666777777777777654
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=4.3e-27 Score=269.37 Aligned_cols=387 Identities=18% Similarity=0.151 Sum_probs=256.5
Q ss_pred ceecccCcceeecCCCCCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcc-cccccccccCCCCCCCccEE
Q 003421 56 RITQIDGMIKTICDPKKWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSL-DLSSKTEKKSEPEKLPMKLL 134 (821)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~~~~~~~~L~~L 134 (821)
.+...++.++.++... .+++++|++++|.+. .++...|.++++|++|++++|.+..+ |..+..+++ |++|
T Consensus 35 ~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-------L~~L 105 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDL-PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD-------LEYL 105 (562)
T ss_dssp EEECTTSCCCSCCTTS-CTTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT-------CCEE
T ss_pred EEEcCCCCCccCCCCC-CCCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCC-------CCEE
Confidence 3344445555554322 267888888888886 55555677888888888888888666 566777777 8888
Q ss_pred EcCCCCCCCCcccccCCCCccEEeccCCcCCCcCch-HhhhCCCCccEEEecCCCCCcCcCcCCCCcc--cEEEccCCCC
Q 003421 135 VLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPD-KLLDEMTKLQSLNLSGCQMKFLPSLSKLFNL--RFLILRDCSS 211 (821)
Q Consensus 135 ~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~i~~lp~l~~l~~L--~~L~l~~~~~ 211 (821)
++++|.+...+.. .+++|++|++++|. +..+|. ..|+++++|++|++++|.++... +..+++| ++|++++|.+
T Consensus 106 ~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 106 DVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQLD-LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp ECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTTT-TGGGTTSCEEEEEEEESSC
T ss_pred ECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccCc-hhhhhhceeeEEEeecccc
Confidence 8888887754444 78888888888754 455441 33478888888888888776532 4444444 8888887766
Q ss_pred --CCCCcc-c--------------------------ccCCcccEEeecCCCCC---------------------------
Q 003421 212 --LQKLPR-I--------------------------NELVRLEIIDLSGATSL--------------------------- 235 (821)
Q Consensus 212 --~~~l~~-l--------------------------~~l~~L~~L~l~~~~~~--------------------------- 235 (821)
....|. + ..+++|+.+++++|...
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 333322 2 24556677776665200
Q ss_pred -----CccChhhccCCCCCCEeeccCcCCc-CCCC-c-----CCCCCCceEeecCccccccccc-----------ccc--
Q 003421 236 -----TFFPEQDLSKHQHLQMIDLSRTQIK-RLPK-F-----GYLKRLSRISIEGCKRFHNFHE-----------IKP-- 290 (821)
Q Consensus 236 -----~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~-~-----~~l~~L~~L~l~~~~~l~~~~~-----------~~~-- 290 (821)
..++ . .....+|++|++++|.++ .+|. + ..++.|+.+++..+.. .++. +..
T Consensus 262 ~~~~~~~~~-~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 262 TWKCSVKLF-Q-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp CHHHHHHHH-H-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEE
T ss_pred cHHHHHHHH-H-hhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEE
Confidence 0000 0 011237788888888777 4554 2 3333333333322211 0000 000
Q ss_pred -CCCCC--CCCCCCCCCCcEEEecCCCCCCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCC
Q 003421 291 -RDSNT--KSKPLFPVSLSELHLRDCPTLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKS 366 (821)
Q Consensus 291 -~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 366 (821)
..... ......+++|++|++++|......+ .+..+++|+.|++++|.+......+..+..+++|+.|++++|.++.
T Consensus 338 l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp EESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred ccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 00000 0012567899999999997777565 7888999999999999866533445678899999999999999986
Q ss_pred -CCC--ccccccccEEEeecCCCcCcCCCCCCCCCcCEEeccCCCCCCcCCC-CCCCCCCCEEEeeCCCCCccCCCcccc
Q 003421 367 -LPP--LSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDLSGCSKLVEFPK-LKDFPKLELLDISNTGIKVVPSDISVT 442 (821)
Q Consensus 367 -l~~--~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~i~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~ 442 (821)
+|. +..+++|+.|++++|++.+.++..-. ++|++|++++|. +..+|. +..+++|++|++++|+++.+|..
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~---- 491 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLKSVPDG---- 491 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSCCCCCCTT----
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCCCCCCCHH----
Confidence 776 78889999999999987666554211 799999999975 557877 66999999999999999755432
Q ss_pred CCCCCchhhhhcccceeeecccccCCCCc
Q 003421 443 SSNFTPDEKHRQASGVFNLVGSLAKGKKP 471 (821)
Q Consensus 443 ~~~~~~~l~~~~~l~~l~l~~n~~~~~~p 471 (821)
.+..++.++.+++++|.+.+..+
T Consensus 492 ------~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 492 ------VFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp ------STTTCTTCCCEECCSCCBCCCHH
T ss_pred ------HHhcCCCCCEEEecCCCcCCCcc
Confidence 02234577889999999987654
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=2.1e-27 Score=265.12 Aligned_cols=362 Identities=17% Similarity=0.196 Sum_probs=280.8
Q ss_pred EEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcc-cccccccccCCCCCCCccEEEcCCCCCCCCc--ccccCCCCc
Q 003421 78 TLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSL-DLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI--GDIELLKKL 154 (821)
Q Consensus 78 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~i~~l~~L 154 (821)
.++..++.+. .+|. -.++|++|++++|.+..+ |..+..+++ |++|++++|.+.+.. ..+.++++|
T Consensus 14 ~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~-------L~~L~L~~n~~~~~i~~~~~~~l~~L 81 (455)
T 3v47_A 14 NAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQD-------LQFLKVEQQTPGLVIRNNTFRGLSSL 81 (455)
T ss_dssp EEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTT-------CCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred ccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCcc-------ccEEECcCCcccceECcccccccccC
Confidence 4556666665 6664 237899999999999766 678899988 999999999886443 468999999
Q ss_pred cEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCc--CcC--cCCCCcccEEEccCCCCCCCCcc--cccCCcccEEe
Q 003421 155 TVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKF--LPS--LSKLFNLRFLILRDCSSLQKLPR--INELVRLEIID 228 (821)
Q Consensus 155 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~--lp~--l~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~ 228 (821)
++|++++|. +..+++..|+++++|++|++++|.++. .+. +..+++|++|++++|.+....|. +.++++|++|+
T Consensus 82 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 82 IILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp CEEECTTCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred CEEeCCCCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence 999999965 455544445999999999999999986 333 88999999999999988777675 78999999999
Q ss_pred ecCCCCCCccChhhccCC--CCCCEeeccCcCCcCCCC----------cCCCCCCceEeecCccccccccccccCCCCCC
Q 003421 229 LSGATSLTFFPEQDLSKH--QHLQMIDLSRTQIKRLPK----------FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTK 296 (821)
Q Consensus 229 l~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~l~~l~~----------~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 296 (821)
+++|. ++..++..+..+ .+|+.|+++++.+..++. +..+++|++|++++|......+..-.
T Consensus 161 L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~------ 233 (455)
T 3v47_A 161 LTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF------ 233 (455)
T ss_dssp CTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH------
T ss_pred CCCCc-ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhh------
Confidence 99987 555544666655 689999999999988664 23567899999998864332221000
Q ss_pred CCCCCCCCCcEEEecCCCCCCCCC-----------CCC--CCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCC
Q 003421 297 SKPLFPVSLSELHLRDCPTLKRLP-----------HIA--GLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTK 363 (821)
Q Consensus 297 ~~~~~~~~L~~L~l~~~~~~~~~~-----------~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 363 (821)
......+|+.|++.+|....... .+. ..++|+.|++++|.+.. ..+..+..+++|+.|++++|.
T Consensus 234 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~ 310 (455)
T 3v47_A 234 -DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNE 310 (455)
T ss_dssp -HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE--ECTTTTTTCTTCCEEECTTSC
T ss_pred -ccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc--cchhhcccCCCCCEEECCCCc
Confidence 01123688999998875443211 111 23689999999998665 678889999999999999999
Q ss_pred CCCCCC--ccccccccEEEeecCCCcCcCCC-CCCCCCcCEEeccCCCCCCcCCC-CCCCCCCCEEEeeCCCCCccCCCc
Q 003421 364 LKSLPP--LSNLHRLRKLFLKNCELLEELPK-MNGLENLEVLDLSGCSKLVEFPK-LKDFPKLELLDISNTGIKVVPSDI 439 (821)
Q Consensus 364 l~~l~~--~~~l~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~c~~l~~i~~-l~~l~~L~~L~l~~~~~~~~~~~~ 439 (821)
++++++ +..+++|++|++++|.+.+..+. +..+++|++|++++|...+..|. +..+++|++|++++|+++.++..
T Consensus 311 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~- 389 (455)
T 3v47_A 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG- 389 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-
T ss_pred ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh-
Confidence 997765 88999999999999987555444 78899999999999876665566 89999999999999999744321
Q ss_pred cccCCCCCchhhhhcccceeeecccccCCCCcc
Q 003421 440 SVTSSNFTPDEKHRQASGVFNLVGSLAKGKKPL 472 (821)
Q Consensus 440 ~~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~p~ 472 (821)
.+..++.++.+++++|.+.+..|.
T Consensus 390 ---------~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 390 ---------IFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp ---------TTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ---------HhccCCcccEEEccCCCcccCCCc
Confidence 123346788999999999998873
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=2.9e-27 Score=257.86 Aligned_cols=305 Identities=18% Similarity=0.196 Sum_probs=228.5
Q ss_pred CCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccc-cccccccCCCCCCCccEEEcCCCCCCCCcc-ccc
Q 003421 72 KWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDL-SSKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIE 149 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~ 149 (821)
.+++++.|+++++.+. .++..+|..+++|++|++++|.+..++. .+..+++ |++|++++|.+.+.++ .++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-------L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT-------IQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTT-------CCEEECCSSCCCCCCTTTTT
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCC-------cCEEECCCCCCCcCCHHHhc
Confidence 4578999999999886 7888888999999999999999977764 7788888 9999999998887664 578
Q ss_pred CCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcccccCCcccEE
Q 003421 150 LLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPRINELVRLEII 227 (821)
Q Consensus 150 ~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L 227 (821)
++++|++|++++| .+..+|..+|+++++|++|++++|.++.++. +..+++|++|++++|.+... .+..+++|+.|
T Consensus 115 ~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L 191 (390)
T 3o6n_A 115 NVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHA 191 (390)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEE
T ss_pred CCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--cccccccccee
Confidence 8999999999885 6678888877889999999999998888754 88888899999888865432 35667777888
Q ss_pred eecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcE
Q 003421 228 DLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSE 307 (821)
Q Consensus 228 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 307 (821)
++++|. ++. +...++|++|++++|.++.++. ..+++|++
T Consensus 192 ~l~~n~-l~~-----~~~~~~L~~L~l~~n~l~~~~~-----------------------------------~~~~~L~~ 230 (390)
T 3o6n_A 192 NVSYNL-LST-----LAIPIAVEELDASHNSINVVRG-----------------------------------PVNVELTI 230 (390)
T ss_dssp ECCSSC-CSE-----EECCSSCSEEECCSSCCCEEEC-----------------------------------CCCSSCCE
T ss_pred eccccc-ccc-----cCCCCcceEEECCCCeeeeccc-----------------------------------cccccccE
Confidence 877765 333 2334577777777777765543 11235666
Q ss_pred EEecCCCCCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC-ccccccccEEEeecCCC
Q 003421 308 LHLRDCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP-LSNLHRLRKLFLKNCEL 386 (821)
Q Consensus 308 L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l~~~~~ 386 (821)
|++++|... ..+.+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+++++. ...+++|+.|++++|++
T Consensus 231 L~l~~n~l~-~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l 307 (390)
T 3o6n_A 231 LKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEK--IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307 (390)
T ss_dssp EECCSSCCC-CCGGGGGCTTCSEEECCSSCCCE--EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCC
T ss_pred EECCCCCCc-ccHHHcCCCCccEEECCCCcCCC--cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcc
Confidence 666665333 33566777888888888887554 556777888888888888888887777 66788888888888875
Q ss_pred cCcCCCCCCCCCcCEEeccCCCCCCcCCCCCCCCCCCEEEeeCCCCC
Q 003421 387 LEELPKMNGLENLEVLDLSGCSKLVEFPKLKDFPKLELLDISNTGIK 433 (821)
Q Consensus 387 ~~~l~~~~~l~~L~~L~l~~c~~l~~i~~l~~l~~L~~L~l~~~~~~ 433 (821)
....+.+..+++|++|++++|.. ..++ +..+++|+.|++++|++.
T Consensus 308 ~~~~~~~~~l~~L~~L~L~~N~i-~~~~-~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 308 LHVERNQPQFDRLENLYLDHNSI-VTLK-LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CCCGGGHHHHTTCSEEECCSSCC-CCCC-CCTTCCCSEEECCSSCEE
T ss_pred eecCccccccCcCCEEECCCCcc-ceeC-chhhccCCEEEcCCCCcc
Confidence 43333366678888888888763 3333 667788888888888774
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.1e-26 Score=256.96 Aligned_cols=342 Identities=17% Similarity=0.138 Sum_probs=194.2
Q ss_pred CCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCC
Q 003421 73 WDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLK 152 (821)
Q Consensus 73 ~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~ 152 (821)
++++++|++++|.+.+ ++ .|..+++|++|++++|.+..+| ++.+++ |++|++++|.+.+. .+++++
T Consensus 41 l~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~-------L~~L~Ls~N~l~~~--~~~~l~ 106 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNITTLD--LSQNTN-------LTYLACDSNKLTNL--DVTPLT 106 (457)
T ss_dssp HTTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCSCCC--CTTCTT-------CSEEECCSSCCSCC--CCTTCT
T ss_pred cCCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCCeEc--cccCCC-------CCEEECcCCCCcee--ecCCCC
Confidence 4566666666666653 33 2556666666666666666554 555555 66666666666553 256666
Q ss_pred CccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCC
Q 003421 153 KLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGA 232 (821)
Q Consensus 153 ~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~ 232 (821)
+|++|++++| .+..+| ++.+++|++|++++|.++.++ ++.+++|++|++++|...+.+ .+..+++|+.|++++|
T Consensus 107 ~L~~L~L~~N-~l~~l~---~~~l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 107 KLTYLNCDTN-KLTKLD---VSQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp TCCEEECCSS-CCSCCC---CTTCTTCCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSS
T ss_pred cCCEEECCCC-cCCeec---CCCCCcCCEEECCCCccceec-cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCC
Confidence 6666666664 344454 356666666666666666654 566666666666666544444 3555666666666665
Q ss_pred CCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecC
Q 003421 233 TSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRD 312 (821)
Q Consensus 233 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 312 (821)
. ++.++ ++.+++|+.|++++|.++.++ ++.+++|+.|++++|..- .++ +..+++|+.|++++
T Consensus 181 ~-l~~l~---l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~-~ip------------~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 181 K-ITELD---VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLT-EID------------VTPLTQLTYFDCSV 242 (457)
T ss_dssp C-CCCCC---CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCS-CCC------------CTTCTTCSEEECCS
T ss_pred c-cceec---cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCccc-ccC------------ccccCCCCEEEeeC
Confidence 4 44443 555666666666666666552 555555555555554311 111 23344555555555
Q ss_pred CCCCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCC-CCCCccccccccEEEeecCCCcCcCC
Q 003421 313 CPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLK-SLPPLSNLHRLRKLFLKNCELLEELP 391 (821)
Q Consensus 313 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~l~~L~~L~l~~~~~~~~l~ 391 (821)
|.... ++ ...+++|+.++++++ +|+.|++++|... .+| .+.+++|+.|++++|...+.+|
T Consensus 243 N~l~~-~~-~~~l~~L~~L~l~~n----------------~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 243 NPLTE-LD-VSTLSKLTTLHCIQT----------------DLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp SCCSC-CC-CTTCTTCCEEECTTC----------------CCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEE
T ss_pred CcCCC-cC-HHHCCCCCEEeccCC----------------CCCEEECCCCccCCccc-ccccccCCEEECCCCcccceec
Confidence 43322 11 233344444443332 2223333333221 111 4556777777777776555443
Q ss_pred ---------CCCCCCCcCEEeccCCCCCCcCCCCCCCCCCCEEEeeCCCCCccCCCccccCCC-CCchhhhhcccceeee
Q 003421 392 ---------KMNGLENLEVLDLSGCSKLVEFPKLKDFPKLELLDISNTGIKVVPSDISVTSSN-FTPDEKHRQASGVFNL 461 (821)
Q Consensus 392 ---------~~~~l~~L~~L~l~~c~~l~~i~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~~l~l 461 (821)
.+..+++|++|++++|...+ ++ +..+++|+.|++++|+++.++....+.... .+........+..+++
T Consensus 304 ~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~-l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l 381 (457)
T 3bz5_A 304 CQAAGITELDLSQNPKLVYLYLNNTELTE-LD-VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETL 381 (457)
T ss_dssp CTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC-CTTCTTCSEEECCSSCCCBCTTGGGSSGGGTSEEEEEEEEECCCBCC
T ss_pred cCCCcceEechhhcccCCEEECCCCcccc-cc-cccCCcCcEEECCCCCCCCccccccccccCCcEEecceeeecCcccc
Confidence 25566888999998876444 43 788999999999999987554433321100 0111112245677888
Q ss_pred cccccCCCCccc
Q 003421 462 VGSLAKGKKPLI 473 (821)
Q Consensus 462 ~~n~~~~~~p~~ 473 (821)
+.|.++|.+|..
T Consensus 382 ~~N~l~g~ip~~ 393 (457)
T 3bz5_A 382 TNNSLTIAVSPD 393 (457)
T ss_dssp BTTBEEEECCTT
T ss_pred ccCcEEEEcChh
Confidence 888888888764
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2.2e-26 Score=246.88 Aligned_cols=301 Identities=18% Similarity=0.282 Sum_probs=241.4
Q ss_pred CCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCC
Q 003421 72 KWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELL 151 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l 151 (821)
.++++++|+++++.+. .++. +..+++|++|++++|.+..++. +..+++ |++|++++|.+.. ++.+..+
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~-------L~~L~L~~n~i~~-~~~~~~l 109 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVK-------LTNLYIGTNKITD-ISALQNL 109 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTT-------CCEEECCSSCCCC-CGGGTTC
T ss_pred hcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh-hhcCCc-------CCEEEccCCcccC-chHHcCC
Confidence 5678899999998886 4543 7789999999999999988877 777777 9999999998776 4578889
Q ss_pred CCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCC-CCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcccEEeec
Q 003421 152 KKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQ-MKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLS 230 (821)
Q Consensus 152 ~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~-i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~ 230 (821)
++|++|++++| .+..++. +..+++|++|++++|. +..++.+..+++|++|++++|... .++.+..+++|+.|+++
T Consensus 110 ~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 110 TNLRELYLNED-NISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK-DVTPIANLTDLYSLSLN 185 (347)
T ss_dssp TTCSEEECTTS-CCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECT
T ss_pred CcCCEEECcCC-cccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC-CchhhccCCCCCEEEcc
Confidence 99999999985 5666666 5889999999999984 444555889999999999988754 44448889999999999
Q ss_pred CCCCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEe
Q 003421 231 GATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHL 310 (821)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 310 (821)
+|. ++.++. +..+++|+.|++++|.+..++.+..+++|++|++++|... .++. +..+++|++|++
T Consensus 186 ~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~-~~~~-----------~~~l~~L~~L~l 250 (347)
T 4fmz_A 186 YNQ-IEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT-DLSP-----------LANLSQLTWLEI 250 (347)
T ss_dssp TSC-CCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-CCGG-----------GTTCTTCCEEEC
T ss_pred CCc-cccccc--ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccC-CCcc-----------hhcCCCCCEEEC
Confidence 886 666653 7888999999999999988877888899999999887532 2211 456788999999
Q ss_pred cCCCCCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--ccccccccEEEeecCCCcC
Q 003421 311 RDCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLKNCELLE 388 (821)
Q Consensus 311 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~~~ 388 (821)
++|.. ..++.+..+++|+.|++++|.+.. + ..+..+++|+.|++++|.++..+. +..+++|+.|++++|++.+
T Consensus 251 ~~n~l-~~~~~~~~l~~L~~L~l~~n~l~~---~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 251 GTNQI-SDINAVKDLTKLKMLNVGSNQISD---I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CSSCC-CCCGGGTTCTTCCEEECCSSCCCC---C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CCCcc-CCChhHhcCCCcCEEEccCCccCC---C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 99844 445778889999999999998655 2 457888999999999999886665 8889999999999998655
Q ss_pred cCCCCCCCCCcCEEeccCCCC
Q 003421 389 ELPKMNGLENLEVLDLSGCSK 409 (821)
Q Consensus 389 ~l~~~~~l~~L~~L~l~~c~~ 409 (821)
.. ++..+++|++|++++|+.
T Consensus 326 ~~-~~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 326 IR-PLASLSKMDSADFANQVI 345 (347)
T ss_dssp CG-GGGGCTTCSEESSSCC--
T ss_pred cc-Chhhhhccceeehhhhcc
Confidence 44 488899999999999863
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.2e-26 Score=270.80 Aligned_cols=130 Identities=17% Similarity=0.203 Sum_probs=86.3
Q ss_pred hcccccEEEEcCCCCch--hhhHHhhcCCcEEEEecCCCCccc-chhchhhhcCCceEEEecccCceecccccchhhhhc
Q 003421 623 RKAAAKFLEIRGLKSIC--DGLKEILNNTEYISWVEPKPMKSL-SDLDAGSLVKMEGLWIARCIEMESIFGEEKDIELAR 699 (821)
Q Consensus 623 ~~~~L~~L~i~~~~~~~--~~~~~~~~~L~~L~i~~c~~l~~l-~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~ 699 (821)
...+++.+++..+.... ......+++++.|.+.++.....+ |..+.. +++|+.|++++| +++.+++. .+..++
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~-l~~L~~L~Ls~N-~L~~l~~~--~f~~l~ 518 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQC-QLEQLSPT--AFNSLS 518 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEECTTS-CCCEECTT--TTTTCT
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh-ccccCEEECCCC-ccCCcChH--HHcCCC
Confidence 44567777776643222 223345578888888887665554 445554 888888888887 56666442 366788
Q ss_pred CcceeeccccccccccccccccccccCCCCceEEecCCCCCcccccC-CCcccccccEEEEec
Q 003421 700 NLKILWVSNLPKVESLFNHKLQSVKNLENLKHLHLDCCPRLKCVFAS-PDQIPKRLEVLEIKF 761 (821)
Q Consensus 700 ~L~~L~i~~c~~L~~l~~~~~~~l~~~~sL~~L~i~~C~~L~~~~p~-~~~l~~~L~~L~i~~ 761 (821)
+|++|+++++ ++..++.. .+..+++|++|.++++ ++..+.|. -..+|++|++|++.+
T Consensus 519 ~L~~L~Ls~N-~l~~l~~~---~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 519 SLQVLNMSHN-NFFSLDTF---PYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp TCCEEECTTS-CCCBCCCG---GGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CCCEEECCCC-cCCCCChh---HHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence 8888888885 57777652 4557888888888776 56664553 235667888888864
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=2.1e-26 Score=258.44 Aligned_cols=308 Identities=23% Similarity=0.286 Sum_probs=183.7
Q ss_pred EEEecCCCccccccHHHHhcCcCCcEEEeecCCCCccc-ccccccccCCCCCCCccEEEcCCCCCCCCc-ccccCCCCcc
Q 003421 78 TLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLD-LSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIELLKKLT 155 (821)
Q Consensus 78 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~l~~L~ 155 (821)
.++.+++.+. .+|.++ .+++++|++++|.+..++ ..+..+++ |++|++++|.+.+.. ..+.++++|+
T Consensus 15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~-------L~~L~L~~n~i~~~~~~~~~~l~~L~ 83 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPH-------LEELELNENIVSAVEPGAFNNLFNLR 83 (477)
T ss_dssp EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTT-------CCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCC-------CCEEECCCCccCEeChhhhhCCccCC
Confidence 4444555543 444322 245666666666665442 45555555 666666666555442 3455666666
Q ss_pred EEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCC
Q 003421 156 VLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGA 232 (821)
Q Consensus 156 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~ 232 (821)
+|++++| .+..+|..+|.++++|++|++++|.+..++. +..+++|++|++++|.+....+. +..+++|+.|++++|
T Consensus 84 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 84 TLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp EEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred EEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 6666653 3455555555566666666666666655432 55666666666666554433332 455566666666655
Q ss_pred CCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecC
Q 003421 233 TSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRD 312 (821)
Q Consensus 233 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 312 (821)
. ++.++...+..+++|+.|++++|.+..++. ..+..+++|++|++++
T Consensus 163 ~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~--------------------------------~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 163 N-LTSIPTEALSHLHGLIVLRLRHLNINAIRD--------------------------------YSFKRLYRLKVLEISH 209 (477)
T ss_dssp C-CSSCCHHHHTTCTTCCEEEEESCCCCEECT--------------------------------TCSCSCTTCCEEEEEC
T ss_pred c-CcccChhHhcccCCCcEEeCCCCcCcEeCh--------------------------------hhcccCcccceeeCCC
Confidence 4 445554455556666666666555554332 0133444555555555
Q ss_pred CCCCCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--ccccccccEEEeecCCCcCc
Q 003421 313 CPTLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLKNCELLEE 389 (821)
Q Consensus 313 ~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~~~~ 389 (821)
|.....++ ......+|+.|++++|.+.. .....+..+++|+.|++++|.++.++. +..+++|+.|++++|++...
T Consensus 210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (477)
T 2id5_A 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTA--VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV 287 (477)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEESSCCCS--CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE
T ss_pred CccccccCcccccCccccEEECcCCcccc--cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE
Confidence 55544444 33334477777777776544 444567777888888888888776665 77778888888888876555
Q ss_pred CCC-CCCCCCcCEEeccCCCCCCcCCC--CCCCCCCCEEEeeCCCCC
Q 003421 390 LPK-MNGLENLEVLDLSGCSKLVEFPK--LKDFPKLELLDISNTGIK 433 (821)
Q Consensus 390 l~~-~~~l~~L~~L~l~~c~~l~~i~~--l~~l~~L~~L~l~~~~~~ 433 (821)
.+. +..+++|++|++++|. +..++. +..+++|++|++++|++.
T Consensus 288 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 288 EPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCCcc
Confidence 443 6777888888888764 344444 677788888888887764
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=3.5e-26 Score=261.87 Aligned_cols=398 Identities=16% Similarity=0.104 Sum_probs=242.3
Q ss_pred CCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCccc-ccccccccCCCCCCCccEEEcCCCCCCCCc-ccccC
Q 003421 73 WDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLD-LSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIEL 150 (821)
Q Consensus 73 ~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~ 150 (821)
+...++++++++.+. .+|.+++ ++|++|++++|.+..++ .++..+++ |++|++++|.+.+.. ..+.+
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~-------L~~L~Ls~N~l~~~~~~~~~~ 98 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSE-------LRVLRLSHNRIRSLDFHVFLF 98 (562)
T ss_dssp ---CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTT-------CCEEECCSCCCCEECTTTTTT
T ss_pred cCCCcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCC-------ccEEECCCCCCCcCCHHHhCC
Confidence 345589999999997 6886543 89999999999998776 58888988 999999999998765 56899
Q ss_pred CCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCc--C-cCCCCcccEEEccCCCCCCCCcccccCCcc--c
Q 003421 151 LKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLP--S-LSKLFNLRFLILRDCSSLQKLPRINELVRL--E 225 (821)
Q Consensus 151 l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp--~-l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L--~ 225 (821)
+++|++|++++| .+..+|.. .+++|++|++++|.++.+| . ++.+++|++|++++|.+.. ..+..+++| +
T Consensus 99 l~~L~~L~Ls~N-~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~ 172 (562)
T 3a79_B 99 NQDLEYLDVSHN-RLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLS 172 (562)
T ss_dssp CTTCCEEECTTS-CCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEE
T ss_pred CCCCCEEECCCC-cCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--Cchhhhhhceee
Confidence 999999999985 56788875 7999999999999999865 5 9999999999999987654 234444555 9
Q ss_pred EEeecCCCC--CCccChhhcc--------------------------CCCCCCEeeccCcCCc-----C-CCCcCC----
Q 003421 226 IIDLSGATS--LTFFPEQDLS--------------------------KHQHLQMIDLSRTQIK-----R-LPKFGY---- 267 (821)
Q Consensus 226 ~L~l~~~~~--~~~~~~~~l~--------------------------~l~~L~~L~l~~~~l~-----~-l~~~~~---- 267 (821)
.|++++|.. .+..+ ..+. .+++|+.+++++|... . ++.+..
T Consensus 173 ~L~L~~n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L 251 (562)
T 3a79_B 173 CILLDLVSYHIKGGET-ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251 (562)
T ss_dssp EEEEEESSCCCCSSSC-CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSC
T ss_pred EEEeecccccccccCc-ccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcc
Confidence 999998874 22222 2333 3456666666665310 0 001111
Q ss_pred -----------------------CCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC--CC
Q 003421 268 -----------------------LKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP--HI 322 (821)
Q Consensus 268 -----------------------l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l 322 (821)
.++|++|++++|.....++.... ......+..|+.+++..+.. .+| .+
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~-----~~~~~~L~~L~~~~~~~~~~--~~p~~~~ 324 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF-----TYSETALKSLMIEHVKNQVF--LFSKEAL 324 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCC-----CCCSCSCCEEEEEEEEECCC--SSCHHHH
T ss_pred eEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhh-----hcccccchheehhhccccee--ecChhhh
Confidence 23566666666543322221100 00012333344444444322 222 00
Q ss_pred ---CCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCC-CCC-ccccccccEEEeecCCCcC--cCC-CCC
Q 003421 323 ---AGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKS-LPP-LSNLHRLRKLFLKNCELLE--ELP-KMN 394 (821)
Q Consensus 323 ---~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~-~~~l~~L~~L~l~~~~~~~--~l~-~~~ 394 (821)
....+|+.|++++|.... .. ....+++|+.|++++|.+++ +|. +..+++|+.|++++|++.+ .+| .+.
T Consensus 325 ~~~~~~~~L~~L~l~~n~~~~-~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 400 (562)
T 3a79_B 325 YSVFAEMNIKMLSISDTPFIH-MV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400 (562)
T ss_dssp HHHHHTCCCSEEEEESSCCCC-CC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT
T ss_pred hhhhccCcceEEEccCCCccc-cc---CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc
Confidence 012356666666665433 11 11455666777777766664 333 6666667777776665433 111 255
Q ss_pred CCCCcCEEeccCCCCCCcCCC--CCCCCCCCEEEeeCCCCCccCCCccccCCCCCchhhhhcccceeeecccccCCCCcc
Q 003421 395 GLENLEVLDLSGCSKLVEFPK--LKDFPKLELLDISNTGIKVVPSDISVTSSNFTPDEKHRQASGVFNLVGSLAKGKKPL 472 (821)
Q Consensus 395 ~l~~L~~L~l~~c~~l~~i~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~p~ 472 (821)
.+++|++|++++|.....+|. +..+++|++|++++|.++. ..+.. + ...++.+++++|.+. .+|.
T Consensus 401 ~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~-----l-----~~~L~~L~L~~N~l~-~ip~ 467 (562)
T 3a79_B 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG--SVFRC-----L-----PPKVKVLDLHNNRIM-SIPK 467 (562)
T ss_dssp TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG--GGGSS-----C-----CTTCSEEECCSSCCC-CCCT
T ss_pred CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc--chhhh-----h-----cCcCCEEECCCCcCc-ccCh
Confidence 666677777766654443544 5566667777777666631 11110 0 035566666666655 2332
Q ss_pred ccccCcceeeccCccccCCCcccccccceeccCCcccccCCCCc---chhcccCCCCCCCCCc
Q 003421 473 ILANDGQIFQSDTGIKADPSEIAATSSNVVPDKKHRQAHGKKPS---VLVNDGGNSQSNDGME 532 (821)
Q Consensus 473 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~p~---~~~~L~~L~ls~~~~~ 532 (821)
.+.. ...++.+++++|.+.+..+. .+++|+.|++++|.+.
T Consensus 468 ~~~~--------------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 468 DVTH--------------------LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp TTTS--------------------SCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred hhcC--------------------CCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 2111 22344556666666643322 2456889999998765
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=3.9e-26 Score=266.49 Aligned_cols=406 Identities=18% Similarity=0.171 Sum_probs=224.4
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccc-cccccccCCCCCCCccEEEcCCCCCCCCcc-cccCC
Q 003421 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDL-SSKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIELL 151 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~~l 151 (821)
+++++|++++|.++ .++...|.++++|++|+|++|.+..++. +|..+++ |++|++++|++...++ .|.++
T Consensus 52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~-------L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH-------LSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT-------CCEEECTTCCCCEECGGGGTTC
T ss_pred cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCC-------CCEEEccCCcCCCCCHHHhcCC
Confidence 46788888888886 6666667888888888888888877754 5777777 8888888888776653 57788
Q ss_pred CCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcC--cC-cCCCCcccEEEccCCCCCCCCcc-cccCCcc---
Q 003421 152 KKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFL--PS-LSKLFNLRFLILRDCSSLQKLPR-INELVRL--- 224 (821)
Q Consensus 152 ~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~l--p~-l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L--- 224 (821)
++|++|++++| .+..+|...|+++++|++|++++|.++.+ |. ++.+++|++|++++|.+....+. +..+.++
T Consensus 124 ~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 124 SSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp TTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 88888888874 56667766568888888888888887753 45 77788888888888765543332 3222221
Q ss_pred -cEEeecCCCCCCccCh------------------------hhccCCCCCCEee--------------------------
Q 003421 225 -EIIDLSGATSLTFFPE------------------------QDLSKHQHLQMID-------------------------- 253 (821)
Q Consensus 225 -~~L~l~~~~~~~~~~~------------------------~~l~~l~~L~~L~-------------------------- 253 (821)
..++++.+. ++.+++ ..+..+..++...
T Consensus 203 ~~~~~ls~n~-l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 203 NLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhcccCc-ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence 234444332 222221 1112222222221
Q ss_pred -------------------------------ccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCC
Q 003421 254 -------------------------------LSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFP 302 (821)
Q Consensus 254 -------------------------------l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 302 (821)
+..+.+..++.+.....++.|++.++..-. + ....+
T Consensus 282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~------------~~~~l 348 (635)
T 4g8a_A 282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ-F------------PTLKL 348 (635)
T ss_dssp EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESS-C------------CCCBC
T ss_pred hhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccC-c------------Ccccc
Confidence 111111111122222233333333221100 0 01233
Q ss_pred CCCcEEEecCCCCCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC-ccccccccEEEe
Q 003421 303 VSLSELHLRDCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP-LSNLHRLRKLFL 381 (821)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l 381 (821)
..|+.+.+..+.. ...+....+++|+.++++++........+..+..+.+|+.+++..+....++. +..+++|+.+++
T Consensus 349 ~~L~~l~l~~n~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l 427 (635)
T 4g8a_A 349 KSLKRLTFTSNKG-GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDF 427 (635)
T ss_dssp TTCCEEEEESCCS-CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEEC
T ss_pred hhhhhcccccccC-CCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhh
Confidence 4555555555432 22234445667777777777654433445555566667777776666554444 556666666666
Q ss_pred ecCCCcCcCCC--CCCCCCcCEEeccCCCCCCcCCC-CCCCCCCCEEEeeCCCCC--ccCCCccccCCCCCchhhhhccc
Q 003421 382 KNCELLEELPK--MNGLENLEVLDLSGCSKLVEFPK-LKDFPKLELLDISNTGIK--VVPSDISVTSSNFTPDEKHRQAS 456 (821)
Q Consensus 382 ~~~~~~~~l~~--~~~l~~L~~L~l~~c~~l~~i~~-l~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~l 456 (821)
.++......+. +..+++++.+++++|......+. +..++.|+.|++++|... ..|.. +..+..+
T Consensus 428 ~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~-----------~~~l~~L 496 (635)
T 4g8a_A 428 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-----------FTELRNL 496 (635)
T ss_dssp TTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-----------CTTCTTC
T ss_pred hhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchh-----------hhhcccc
Confidence 66554443332 55566666666666554444444 556666666666666531 11111 1122455
Q ss_pred ceeeecccccCCCCccccccCcceeeccCccccCCCcccccccceeccCCcccccCCCCcch---hcccCCCCCCCCCcc
Q 003421 457 GVFNLVGSLAKGKKPLILANDGQIFQSDTGIKADPSEIAATSSNVVPDKKHRQAHGKKPSVL---VNDGGNSQSNDGMEA 533 (821)
Q Consensus 457 ~~l~l~~n~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~---~~L~~L~ls~~~~~~ 533 (821)
+.|++++|.+.+..|..+... ..++.+++++|.+.+..|..+ ++|+.|++++|.+..
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l--------------------~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSL--------------------SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTC--------------------TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred CEEECCCCccCCcChHHHcCC--------------------CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 666666666665544332222 233444555555555544433 235555555555554
Q ss_pred C
Q 003421 534 D 534 (821)
Q Consensus 534 ~ 534 (821)
+
T Consensus 557 ~ 557 (635)
T 4g8a_A 557 S 557 (635)
T ss_dssp C
T ss_pred C
Confidence 4
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.2e-26 Score=263.47 Aligned_cols=304 Identities=18% Similarity=0.201 Sum_probs=228.2
Q ss_pred CCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccc-cccccccCCCCCCCccEEEcCCCCCCCCcc-ccc
Q 003421 72 KWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDL-SSKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIE 149 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~ 149 (821)
.+.+++.+++++|.+. .++..+|.++++|++|++++|.+..++. .+..+.+ |++|++++|.+.+.++ .++
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-------L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT-------IQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTT-------CCEEECCSSCCCCCCTTTTT
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCC-------CCEEECCCCcCCCCCHHHHc
Confidence 4578899999999886 7888888999999999999999977664 7888888 9999999998887765 468
Q ss_pred CCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcccccCCcccEE
Q 003421 150 LLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPRINELVRLEII 227 (821)
Q Consensus 150 ~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L 227 (821)
++++|++|++++| .+..+|..+|+++++|++|++++|.++.++. ++.+++|++|++++|.+... .+..+++|+.|
T Consensus 121 ~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L 197 (597)
T 3oja_B 121 NVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHA 197 (597)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEE
T ss_pred CCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--Chhhhhhhhhh
Confidence 8999999999885 5678888877889999999999998888654 88888999999888865432 35667778888
Q ss_pred eecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcE
Q 003421 228 DLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSE 307 (821)
Q Consensus 228 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 307 (821)
++++|. ++. +....+|+.|++++|.+..++.. .+++|+.
T Consensus 198 ~l~~n~-l~~-----l~~~~~L~~L~ls~n~l~~~~~~-----------------------------------~~~~L~~ 236 (597)
T 3oja_B 198 NVSYNL-LST-----LAIPIAVEELDASHNSINVVRGP-----------------------------------VNVELTI 236 (597)
T ss_dssp ECCSSC-CSE-----EECCTTCSEEECCSSCCCEEECS-----------------------------------CCSCCCE
T ss_pred hcccCc-ccc-----ccCCchhheeeccCCcccccccc-----------------------------------cCCCCCE
Confidence 887765 332 33455777777777777655431 1235666
Q ss_pred EEecCCCCCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC-ccccccccEEEeecCCC
Q 003421 308 LHLRDCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP-LSNLHRLRKLFLKNCEL 386 (821)
Q Consensus 308 L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l~~~~~ 386 (821)
|++++|... ..+.+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++++|. ...+++|+.|++++|.+
T Consensus 237 L~L~~n~l~-~~~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l 313 (597)
T 3oja_B 237 LKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEK--IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313 (597)
T ss_dssp EECCSSCCC-CCGGGGGCTTCSEEECCSSCCCE--EESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCC
T ss_pred EECCCCCCC-CChhhccCCCCCEEECCCCccCC--CCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCC
Confidence 666665433 33566777888888888887554 566778888888888888888887777 66788888888888875
Q ss_pred cCcCC-CCCCCCCcCEEeccCCCCCCcCCCCCCCCCCCEEEeeCCCCC
Q 003421 387 LEELP-KMNGLENLEVLDLSGCSKLVEFPKLKDFPKLELLDISNTGIK 433 (821)
Q Consensus 387 ~~~l~-~~~~l~~L~~L~l~~c~~l~~i~~l~~l~~L~~L~l~~~~~~ 433 (821)
. .+| .+..+++|+.|++++|... .++ +..+++|+.|++++|++.
T Consensus 314 ~-~i~~~~~~l~~L~~L~L~~N~l~-~~~-~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 314 L-HVERNQPQFDRLENLYLDHNSIV-TLK-LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp C-CCGGGHHHHTTCSEEECCSSCCC-CCC-CCTTCCCSEEECCSSCEE
T ss_pred C-ccCcccccCCCCCEEECCCCCCC-CcC-hhhcCCCCEEEeeCCCCC
Confidence 5 344 3666788888888887643 333 667788888888888764
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.7e-25 Score=247.55 Aligned_cols=307 Identities=19% Similarity=0.200 Sum_probs=245.3
Q ss_pred HhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhh
Q 003421 95 LARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLD 174 (821)
Q Consensus 95 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~ 174 (821)
+.++++|++|++++|.+..+| .+..+++ |++|++++|.+.+.+ ++.+++|++|++++| .+..+| ++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~-------L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~---~~ 103 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTG-------LTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD---VT 103 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTT-------CSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC---CT
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCC-------CCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee---cC
Confidence 567899999999999998887 6888888 999999999988753 899999999999986 466665 58
Q ss_pred CCCCccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCCCCCccChhhccCCCCCCEeec
Q 003421 175 EMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDL 254 (821)
Q Consensus 175 ~l~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 254 (821)
++++|++|++++|.++.+| ++.+++|++|++++|.+.. + .+..+++|+.|++++|..++.++ ++.+++|++|++
T Consensus 104 ~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~-l-~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~l 177 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTE-I-DVSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDC 177 (457)
T ss_dssp TCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSC-C-CCTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEEC
T ss_pred CCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccce-e-ccccCCcCCEEECCCCCcccccc---cccCCcCCEEEC
Confidence 9999999999999999987 8999999999999998765 3 48899999999999997677663 778999999999
Q ss_pred cCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcCEEEec
Q 003421 255 SRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLPHIAGLKNLEVLDVS 334 (821)
Q Consensus 255 ~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~ 334 (821)
++|.++.+| +..+++|+.|++++|..- .++ +..+++|++|++++|.... +| +..+++|+.|+++
T Consensus 178 s~n~l~~l~-l~~l~~L~~L~l~~N~l~-~~~------------l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 178 SFNKITELD-VSQNKLLNRLNCDTNNIT-KLD------------LNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCS 241 (457)
T ss_dssp CSSCCCCCC-CTTCTTCCEEECCSSCCS-CCC------------CTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECC
T ss_pred CCCccceec-cccCCCCCEEECcCCcCC-eec------------cccCCCCCEEECcCCcccc-cC-ccccCCCCEEEee
Confidence 999999987 888889999998876421 111 4566778888888875544 55 6777788888888
Q ss_pred CCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCCccccccccEEEeecCCCcCcCCCCCCCCCcCEEeccCCCCCCcCC
Q 003421 335 GTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDLSGCSKLVEFP 414 (821)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~i~ 414 (821)
+|.... . + +..+++|+.|+++++ +|+.|++++|...+.+| .+.+++|+.|++++|..++.+|
T Consensus 242 ~N~l~~--~-~--~~~l~~L~~L~l~~n------------~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 242 VNPLTE--L-D--VSTLSKLTTLHCIQT------------DLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp SSCCSC--C-C--CTTCTTCCEEECTTC------------CCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEE
T ss_pred CCcCCC--c-C--HHHCCCCCEEeccCC------------CCCEEECCCCccCCccc-ccccccCCEEECCCCcccceec
Confidence 777544 1 1 345667777777654 45667788888777776 5778999999999998777654
Q ss_pred C---------CCCCCCCCEEEeeCCCCCccCCCccccCCCCCchhhhhcccceeeecccccCC
Q 003421 415 K---------LKDFPKLELLDISNTGIKVVPSDISVTSSNFTPDEKHRQASGVFNLVGSLAKG 468 (821)
Q Consensus 415 ~---------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~n~~~~ 468 (821)
. +..+++|++|++++|+++.++ +..++.++.+++++|.+++
T Consensus 304 ~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~-------------l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 304 CQAAGITELDLSQNPKLVYLYLNNTELTELD-------------VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CTTCCCSCCCCTTCTTCCEEECTTCCCSCCC-------------CTTCTTCSEEECCSSCCCB
T ss_pred cCCCcceEechhhcccCCEEECCCCcccccc-------------cccCCcCcEEECCCCCCCC
Confidence 2 567789999999999987432 1223567889999998886
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=3e-26 Score=257.08 Aligned_cols=301 Identities=20% Similarity=0.255 Sum_probs=220.8
Q ss_pred cCcceeecCCCCCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcc-cccccccccCCCCCCCccEEEcCCC
Q 003421 61 DGMIKTICDPKKWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSL-DLSSKTEKKSEPEKLPMKLLVLRSC 139 (821)
Q Consensus 61 ~~~~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~~~~~~~~L~~L~l~~~ 139 (821)
...++.++.. -.++++.|++++|.+. .++...|.++++|++|++++|.+..+ |..+..+.+ |++|++++|
T Consensus 20 ~~~l~~ip~~-~~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-------L~~L~L~~n 90 (477)
T 2id5_A 20 RKRFVAVPEG-IPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN-------LRTLGLRSN 90 (477)
T ss_dssp SCCCSSCCSC-CCTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT-------CCEEECCSS
T ss_pred CCCcCcCCCC-CCCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCcc-------CCEEECCCC
Confidence 3444444432 2368999999999997 56556789999999999999999766 678899988 999999999
Q ss_pred CCCCCcc-cccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCc
Q 003421 140 NLLNGIG-DIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLP 216 (821)
Q Consensus 140 ~~~~~~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~ 216 (821)
.+...+. .+.++++|++|++++| .+..+++..|..+++|++|++++|.++.++. +..+++|++|++++|.+....+
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 9988774 5789999999999986 4555555556999999999999999998754 9999999999999998665444
Q ss_pred c-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcC-CCC-cCCCCCCceEeecCccccccccccccCCC
Q 003421 217 R-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKR-LPK-FGYLKRLSRISIEGCKRFHNFHEIKPRDS 293 (821)
Q Consensus 217 ~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 293 (821)
. +..+++|+.|++++|. +..++...+..+++|++|++++|.... ++. ....
T Consensus 170 ~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~------------------------- 223 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG------------------------- 223 (477)
T ss_dssp HHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT-------------------------
T ss_pred hHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccccC-------------------------
Confidence 4 7999999999999987 666766788999999999998875543 332 2222
Q ss_pred CCCCCCCCCCCCcEEEecCCCCCCCCC--CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--
Q 003421 294 NTKSKPLFPVSLSELHLRDCPTLKRLP--HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP-- 369 (821)
Q Consensus 294 ~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-- 369 (821)
.+|++|++++|... .++ .+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++.+++
T Consensus 224 ---------~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (477)
T 2id5_A 224 ---------LNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQLAVVEPYA 291 (477)
T ss_dssp ---------CCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCE--ECTTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred ---------ccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCc--cChhhccccccCCEEECCCCccceECHHH
Confidence 25555555555332 333 45566666777776666443 444556666677777777776665543
Q ss_pred ccccccccEEEeecCCCcCcCCC-CCCCCCcCEEeccCCCC
Q 003421 370 LSNLHRLRKLFLKNCELLEELPK-MNGLENLEVLDLSGCSK 409 (821)
Q Consensus 370 ~~~l~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~c~~ 409 (821)
+..+++|+.|++++|.+....+. +..+++|++|++++|+.
T Consensus 292 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp BTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred hcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 66667777777777654433222 55666777777776653
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2e-24 Score=238.62 Aligned_cols=343 Identities=22% Similarity=0.244 Sum_probs=218.1
Q ss_pred ceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCc
Q 003421 75 EVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKL 154 (821)
Q Consensus 75 ~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L 154 (821)
++++|++++|.+. .++. -.++|++|++++|.+..+|..+ .+ |++|++++|.+.+.+. + .++|
T Consensus 72 ~l~~L~l~~~~l~-~lp~----~~~~L~~L~l~~n~l~~lp~~~---~~-------L~~L~l~~n~l~~l~~-~--~~~L 133 (454)
T 1jl5_A 72 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTELPELP---QS-------LKSLLVDNNNLKALSD-L--PPLL 133 (454)
T ss_dssp TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSSCCCCC---TT-------CCEEECCSSCCSCCCS-C--CTTC
T ss_pred CCCEEEecCCccc-cCCC----CcCCCCEEEccCCcCCcccccc---CC-------CcEEECCCCccCcccC-C--CCCC
Confidence 4588888888876 4443 2478888888888887777543 45 8888888887765332 1 2688
Q ss_pred cEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCCC
Q 003421 155 TVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGATS 234 (821)
Q Consensus 155 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 234 (821)
++|++++| .+..+| + ++++++|++|++++|.++.+|.. ..+|++|++++|.+.. +|.+..+++|+.|++++|.
T Consensus 134 ~~L~L~~n-~l~~lp-~-~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~- 206 (454)
T 1jl5_A 134 EYLGVSNN-QLEKLP-E-LQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNS- 206 (454)
T ss_dssp CEEECCSS-CCSSCC-C-CTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC-
T ss_pred CEEECcCC-CCCCCc-c-cCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCc-CccccCCCCCCEEECCCCc-
Confidence 88888875 455677 3 58888888888888888888762 2488888888887554 6778888888888888876
Q ss_pred CCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCC
Q 003421 235 LTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCP 314 (821)
Q Consensus 235 ~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 314 (821)
++.+|. . .++|++|++++|.++.+|.++.+++|+.|++++|.. ..++ ..+++|++|++++|.
T Consensus 207 l~~l~~-~---~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l-~~l~-------------~~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 207 LKKLPD-L---PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL-KTLP-------------DLPPSLEALNVRDNY 268 (454)
T ss_dssp CSSCCC-C---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC-SSCC-------------SCCTTCCEEECCSSC
T ss_pred CCcCCC-C---cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcC-Cccc-------------ccccccCEEECCCCc
Confidence 555552 1 258888888888888888888888888888887642 2222 124678888888875
Q ss_pred CCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCCccccccccEEEeecCCCcCcCCCCC
Q 003421 315 TLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPKMN 394 (821)
Q Consensus 315 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~l~~~~ 394 (821)
... +|.. .++|+.|++++|........ .++|+.|++++|.+++++.+ .++|+.|++++|++.+ +|..
T Consensus 269 l~~-l~~~--~~~L~~L~ls~N~l~~l~~~------~~~L~~L~l~~N~l~~i~~~--~~~L~~L~Ls~N~l~~-lp~~- 335 (454)
T 1jl5_A 269 LTD-LPEL--PQSLTFLDVSENIFSGLSEL------PPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIE-LPAL- 335 (454)
T ss_dssp CSC-CCCC--CTTCCEEECCSSCCSEESCC------CTTCCEEECCSSCCSEECCC--CTTCCEEECCSSCCSC-CCCC-
T ss_pred ccc-cCcc--cCcCCEEECcCCccCcccCc------CCcCCEEECcCCcCCcccCC--cCcCCEEECCCCcccc-cccc-
Confidence 443 4432 36888888888875441111 26788888888887766542 2578888888887544 5543
Q ss_pred CCCCcCEEeccCCCCCCcCCCCCCCCCCCEEEeeCCCCCccCCCccccC-CC---CC-chhhhhcccceeeecccccCC-
Q 003421 395 GLENLEVLDLSGCSKLVEFPKLKDFPKLELLDISNTGIKVVPSDISVTS-SN---FT-PDEKHRQASGVFNLVGSLAKG- 468 (821)
Q Consensus 395 ~l~~L~~L~l~~c~~l~~i~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~---~~-~~l~~~~~l~~l~l~~n~~~~- 468 (821)
+++|++|++++|. +..+|. .+++|++|++++|+++.+|.+|.... +. .. ........++.+++++|.+.+
T Consensus 336 -~~~L~~L~L~~N~-l~~lp~--~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~ 411 (454)
T 1jl5_A 336 -PPRLERLIASFNH-LAEVPE--LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411 (454)
T ss_dssp -CTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------
T ss_pred -CCcCCEEECCCCc-cccccc--hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc
Confidence 5788888888875 445665 56788888888888876554443211 00 00 000123678888889888887
Q ss_pred -CCccccccC
Q 003421 469 -KKPLILAND 477 (821)
Q Consensus 469 -~~p~~~~~~ 477 (821)
.+|.++...
T Consensus 412 ~~iP~sl~~L 421 (454)
T 1jl5_A 412 PDIPESVEDL 421 (454)
T ss_dssp ----------
T ss_pred ccchhhHhhe
Confidence 777765544
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=3.8e-25 Score=241.13 Aligned_cols=304 Identities=17% Similarity=0.196 Sum_probs=235.8
Q ss_pred cCcCCcEEEeecCCCCccccc-ccccccCCCCCCCccEEEcCCCCCCCCcc-cccCCCCccEEeccCCcCCCcCchHhhh
Q 003421 97 RMKQLHALAIFNSGFKSLDLS-SKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIELLKKLTVLEISGANSVQKIPDKLLD 174 (821)
Q Consensus 97 ~l~~L~~L~l~~~~~~~l~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~ 174 (821)
.++++++|+++++.++.+|.. +..+++ |++|++++|.+.+.++ .+..+++|++|++++| .+..+++..|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~-------L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 114 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQ-------VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQ 114 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCC-------CSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred ccCCceEEEecCCchhhCChhHhccccc-------CcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhc
Confidence 468999999999999989875 577888 9999999998877654 7889999999999985 56677766668
Q ss_pred CCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCE
Q 003421 175 EMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQM 251 (821)
Q Consensus 175 ~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 251 (821)
++++|++|++++|.++.+|. +..+++|++|++++|.+....+. +..+++|+.|++++|. ++.++ ++.+++|++
T Consensus 115 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~ 190 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFH 190 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSE
T ss_pred CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccce
Confidence 99999999999999999887 68899999999999876655554 6778888888888776 55543 455677788
Q ss_pred eeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcCEE
Q 003421 252 IDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLPHIAGLKNLEVL 331 (821)
Q Consensus 252 L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L 331 (821)
|++++|.++.++. +++|++|++++|.... ++ ....++|+.|
T Consensus 191 L~l~~n~l~~~~~-------------------------------------~~~L~~L~l~~n~l~~-~~-~~~~~~L~~L 231 (390)
T 3o6n_A 191 ANVSYNLLSTLAI-------------------------------------PIAVEELDASHNSINV-VR-GPVNVELTIL 231 (390)
T ss_dssp EECCSSCCSEEEC-------------------------------------CSSCSEEECCSSCCCE-EE-CCCCSSCCEE
T ss_pred eecccccccccCC-------------------------------------CCcceEEECCCCeeee-cc-ccccccccEE
Confidence 8887776665321 2345666666653322 22 1235789999
Q ss_pred EecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--ccccccccEEEeecCCCcCcCCCCCCCCCcCEEeccCCCC
Q 003421 332 DVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDLSGCSK 409 (821)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~c~~ 409 (821)
++++|.... ...+..+++|+.|++++|.++++++ +..+++|+.|++++|++.........+++|++|++++|.
T Consensus 232 ~l~~n~l~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~- 306 (390)
T 3o6n_A 232 KLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH- 306 (390)
T ss_dssp ECCSSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-
T ss_pred ECCCCCCcc----cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-
Confidence 999998655 2578889999999999999997644 889999999999999865543336779999999999985
Q ss_pred CCcCCC-CCCCCCCCEEEeeCCCCCccCCCccccCCCCCchhhhhcccceeeecccccCCC
Q 003421 410 LVEFPK-LKDFPKLELLDISNTGIKVVPSDISVTSSNFTPDEKHRQASGVFNLVGSLAKGK 469 (821)
Q Consensus 410 l~~i~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~n~~~~~ 469 (821)
+..+|. +..+++|++|++++|+++.++ +..++.++.+++++|.+...
T Consensus 307 l~~~~~~~~~l~~L~~L~L~~N~i~~~~-------------~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 307 LLHVERNQPQFDRLENLYLDHNSIVTLK-------------LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCCCGGGHHHHTTCSEEECCSSCCCCCC-------------CCTTCCCSEEECCSSCEEHH
T ss_pred ceecCccccccCcCCEEECCCCccceeC-------------chhhccCCEEEcCCCCccch
Confidence 446665 778899999999999997543 12235788999999988653
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.4e-24 Score=249.72 Aligned_cols=305 Identities=17% Similarity=0.187 Sum_probs=236.8
Q ss_pred cCcCCcEEEeecCCCCccccc-ccccccCCCCCCCccEEEcCCCCCCCCcc-cccCCCCccEEeccCCcCCCcCchHhhh
Q 003421 97 RMKQLHALAIFNSGFKSLDLS-SKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIELLKKLTVLEISGANSVQKIPDKLLD 174 (821)
Q Consensus 97 ~l~~L~~L~l~~~~~~~l~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~ 174 (821)
.+.+++.++++++.++.+|.. +..+++ |++|++++|.+.+.++ .++.+++|++|++++| .+..+|+..|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~-------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 120 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQ-------VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQ 120 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCC-------CSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCC-------CcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHc
Confidence 368899999999999888875 567888 9999999999887664 7889999999999985 56677777778
Q ss_pred CCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCE
Q 003421 175 EMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQM 251 (821)
Q Consensus 175 ~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 251 (821)
++++|++|++++|.++.+|. ++.+++|++|++++|.+....|. +..+++|+.|++++|. ++.++ ++.+++|+.
T Consensus 121 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~ 196 (597)
T 3oja_B 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFH 196 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSE
T ss_pred CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhh
Confidence 99999999999999998887 68899999999999877665554 7788888888888876 55544 455677788
Q ss_pred eeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcCEE
Q 003421 252 IDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLPHIAGLKNLEVL 331 (821)
Q Consensus 252 L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L 331 (821)
|++++|.++.++. +++|++|++++|......+. ..++|+.|
T Consensus 197 L~l~~n~l~~l~~-------------------------------------~~~L~~L~ls~n~l~~~~~~--~~~~L~~L 237 (597)
T 3oja_B 197 ANVSYNLLSTLAI-------------------------------------PIAVEELDASHNSINVVRGP--VNVELTIL 237 (597)
T ss_dssp EECCSSCCSEEEC-------------------------------------CTTCSEEECCSSCCCEEECS--CCSCCCEE
T ss_pred hhcccCccccccC-------------------------------------CchhheeeccCCcccccccc--cCCCCCEE
Confidence 8887776665321 23456666666543222212 23689999
Q ss_pred EecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--ccccccccEEEeecCCCcCcCCCCCCCCCcCEEeccCCCC
Q 003421 332 DVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDLSGCSK 409 (821)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~c~~ 409 (821)
++++|.... +..+..+++|+.|++++|.+.++++ +..+++|+.|++++|.+.........+++|+.|++++|..
T Consensus 238 ~L~~n~l~~----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l 313 (597)
T 3oja_B 238 KLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313 (597)
T ss_dssp ECCSSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCC
T ss_pred ECCCCCCCC----ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCC
Confidence 999998654 3678899999999999999997644 8999999999999998655433467799999999999865
Q ss_pred CCcCCC-CCCCCCCCEEEeeCCCCCccCCCccccCCCCCchhhhhcccceeeecccccCCCC
Q 003421 410 LVEFPK-LKDFPKLELLDISNTGIKVVPSDISVTSSNFTPDEKHRQASGVFNLVGSLAKGKK 470 (821)
Q Consensus 410 l~~i~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~ 470 (821)
. .+|. +..+++|+.|++++|.++.++ +..++.++.+++++|.+.+..
T Consensus 314 ~-~i~~~~~~l~~L~~L~L~~N~l~~~~-------------~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 314 L-HVERNQPQFDRLENLYLDHNSIVTLK-------------LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp C-CCGGGHHHHTTCSEEECCSSCCCCCC-------------CCTTCCCSEEECCSSCEEHHH
T ss_pred C-ccCcccccCCCCCEEECCCCCCCCcC-------------hhhcCCCCEEEeeCCCCCChh
Confidence 4 6666 778999999999999996442 122357889999999887643
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=1e-23 Score=224.27 Aligned_cols=282 Identities=21% Similarity=0.237 Sum_probs=195.3
Q ss_pred cCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCc-ccccCCCCccEEeccCCcCCCcCchHhhhCCC
Q 003421 99 KQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIELLKKLTVLEISGANSVQKIPDKLLDEMT 177 (821)
Q Consensus 99 ~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~ 177 (821)
.++++++++++.+..+|..+. .+ |++|++++|.+...+ ..+.++++|++|++++| .+..+++..|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~-------l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~ 102 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PD-------TTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLR 102 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TT-------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCT
T ss_pred ccCCEEECCCCCccccCCCCC--CC-------CeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcC
Confidence 368888888888888887664 35 888888888887665 36888888888888875 45555444458888
Q ss_pred CccEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCc--cChhhccCCCCCCEee
Q 003421 178 KLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTF--FPEQDLSKHQHLQMID 253 (821)
Q Consensus 178 ~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~ 253 (821)
+|++|++++|.++.+|. +. ++|++|++++|.+....+. +..+++|+.|++++|. ++. ..+..+..+ +|++|+
T Consensus 103 ~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 103 KLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp TCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCB
T ss_pred CCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEE
Confidence 88888888888888887 44 7888888888876544443 6778888888888776 432 333556666 788888
Q ss_pred ccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC-CCCCCCCcCEEE
Q 003421 254 LSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP-HIAGLKNLEVLD 332 (821)
Q Consensus 254 l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~ 332 (821)
+++|.++.+|... .+ +|++|++++|......+ .+..+++|+.|+
T Consensus 179 l~~n~l~~l~~~~-~~----------------------------------~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 223 (332)
T 2ft3_A 179 ISEAKLTGIPKDL-PE----------------------------------TLNELHLDHNKIQAIELEDLLRYSKLYRLG 223 (332)
T ss_dssp CCSSBCSSCCSSS-CS----------------------------------SCSCCBCCSSCCCCCCTTSSTTCTTCSCCB
T ss_pred CcCCCCCccCccc-cC----------------------------------CCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 8888777766411 13 44455555554333332 566777888888
Q ss_pred ecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC-ccccccccEEEeecCCCcCcCCC-CCC------CCCcCEEec
Q 003421 333 VSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP-LSNLHRLRKLFLKNCELLEELPK-MNG------LENLEVLDL 404 (821)
Q Consensus 333 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~------l~~L~~L~l 404 (821)
+++|.+.. ..+..+..+++|+.|++++|.++.+|. +..+++|+.|++++|++....+. +.. .+.|+.|++
T Consensus 224 L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 224 LGHNQIRM--IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp CCSSCCCC--CCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred CCCCcCCc--CChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEe
Confidence 88877554 555677788888888888888888887 78888888888888875433222 222 467888888
Q ss_pred cCCCCC--CcCCC-CCCCCCCCEEEeeCCC
Q 003421 405 SGCSKL--VEFPK-LKDFPKLELLDISNTG 431 (821)
Q Consensus 405 ~~c~~l--~~i~~-l~~l~~L~~L~l~~~~ 431 (821)
.+|+.. ...+. +..+++|+.+++++|+
T Consensus 302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 302 FNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ecCcccccccCcccccccchhhhhhccccc
Confidence 887744 22223 7778888888887764
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=1.8e-23 Score=222.28 Aligned_cols=283 Identities=22% Similarity=0.265 Sum_probs=183.5
Q ss_pred cCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcc-cccCCCCccEEeccCCcCCCcCchHhhhCCC
Q 003421 99 KQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIELLKKLTVLEISGANSVQKIPDKLLDEMT 177 (821)
Q Consensus 99 ~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~ 177 (821)
.++++++++++.+..+|..+. .. +++|++++|.+.+.++ .++++++|++|++++| .+..+++..|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~-------l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PD-------TALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLV 100 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TT-------CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCT
T ss_pred CCCeEEEecCCCccccCccCC--CC-------CeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCC
Confidence 467888888888877776554 34 8888888888777654 6788888888888875 44455333357888
Q ss_pred CccEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCC-ccChhhccCCCCCCEeec
Q 003421 178 KLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLT-FFPEQDLSKHQHLQMIDL 254 (821)
Q Consensus 178 ~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l 254 (821)
+|++|++++|.++.+|. +. ++|++|++++|.+....+. +.++++|+.|++++|.... ...+..+..+++|++|++
T Consensus 101 ~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 101 KLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp TCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 88888888888888776 43 6788888887765544443 6777777777777765221 133356677777777777
Q ss_pred cCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC-CCCCCCCcCEEEe
Q 003421 255 SRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP-HIAGLKNLEVLDV 333 (821)
Q Consensus 255 ~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l 333 (821)
++|.++.+|.. ..++|++|++++|......+ .+..+++|+.|++
T Consensus 179 ~~n~l~~l~~~-----------------------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 179 ADTNITTIPQG-----------------------------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223 (330)
T ss_dssp CSSCCCSCCSS-----------------------------------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred CCCccccCCcc-----------------------------------ccccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 77777765531 11355555555554333323 5666777777777
Q ss_pred cCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC-ccccccccEEEeecCCCcCcCCC-CC------CCCCcCEEecc
Q 003421 334 SGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP-LSNLHRLRKLFLKNCELLEELPK-MN------GLENLEVLDLS 405 (821)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l~~~~~~~~l~~-~~------~l~~L~~L~l~ 405 (821)
++|.+.. ..+..+..+++|+.|++++|.++.+|. +..+++|++|++++|++....+. +. ..+.|+.++++
T Consensus 224 s~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~ 301 (330)
T 1xku_A 224 SFNSISA--VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 301 (330)
T ss_dssp CSSCCCE--ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred CCCcCce--eChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEee
Confidence 7776544 445566777777777777777777776 77777777777777764332221 21 23566777777
Q ss_pred CCCCCC-cCC-C-CCCCCCCCEEEeeCC
Q 003421 406 GCSKLV-EFP-K-LKDFPKLELLDISNT 430 (821)
Q Consensus 406 ~c~~l~-~i~-~-l~~l~~L~~L~l~~~ 430 (821)
+|+... .++ . +..+++++.+++++|
T Consensus 302 ~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 302 SNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCcccccccCccccccccceeEEEeccc
Confidence 765332 122 2 566666777776665
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=1.8e-21 Score=206.70 Aligned_cols=260 Identities=18% Similarity=0.287 Sum_probs=155.7
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcc-cccccccccCCCCCCCccEEEcCCCCCCCCcccccCCC
Q 003421 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSL-DLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLK 152 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~ 152 (821)
++++.|++++|.+. .++...|.++++|++|++++|.+..+ |..+..+++ |++|++++|.+...+..+. +
T Consensus 52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-------L~~L~Ls~n~l~~l~~~~~--~ 121 (330)
T 1xku_A 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK-------LERLYLSKNQLKELPEKMP--K 121 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTT-------CCEEECCSSCCSBCCSSCC--T
T ss_pred CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCC-------CCEEECCCCcCCccChhhc--c
Confidence 56677777777765 44444566677777777777777555 556666666 7777777776665444332 5
Q ss_pred CccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCc---CcC-cCCCCcccEEEccCCCCCCCCcc-cccCCcccEE
Q 003421 153 KLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKF---LPS-LSKLFNLRFLILRDCSSLQKLPR-INELVRLEII 227 (821)
Q Consensus 153 ~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~---lp~-l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L 227 (821)
+|++|++++| .+..++...+.++++|++|++++|.+.. .+. +..+++|++|++++|.+. .+|. +. ++|+.|
T Consensus 122 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L 197 (330)
T 1xku_A 122 TLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTEL 197 (330)
T ss_dssp TCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEE
T ss_pred cccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEE
Confidence 6777777763 4555665555677777777777776653 233 666777777777766543 2333 22 566777
Q ss_pred eecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCC--cCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCC
Q 003421 228 DLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK--FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSL 305 (821)
Q Consensus 228 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L 305 (821)
++++|. ++.+++..+..+++|++|++++|.++.++. +..++ +|
T Consensus 198 ~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~----------------------------------~L 242 (330)
T 1xku_A 198 HLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP----------------------------------HL 242 (330)
T ss_dssp ECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST----------------------------------TC
T ss_pred ECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC----------------------------------CC
Confidence 776665 554544566666777777777766665432 44444 45
Q ss_pred cEEEecCCCCCCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcC------CCCCcEEEecCCCCC--CCCC--ccccc
Q 003421 306 SELHLRDCPTLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHD------LDYLRELNLSNTKLK--SLPP--LSNLH 374 (821)
Q Consensus 306 ~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~------l~~L~~L~l~~~~l~--~l~~--~~~l~ 374 (821)
++|++++|... .+| .+..+++|+.|++++|.+.. .....|.. .+.++.+++.+|.+. .+++ +..++
T Consensus 243 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~--~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~ 319 (330)
T 1xku_A 243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA--IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319 (330)
T ss_dssp CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC--CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc--cChhhcCCcccccccccccceEeecCcccccccCcccccccc
Confidence 55555555333 333 45566666667776666544 23333322 356777777777665 2333 66777
Q ss_pred cccEEEeecCC
Q 003421 375 RLRKLFLKNCE 385 (821)
Q Consensus 375 ~L~~L~l~~~~ 385 (821)
+++.+++++|+
T Consensus 320 ~l~~l~L~~N~ 330 (330)
T 1xku_A 320 VRAAVQLGNYK 330 (330)
T ss_dssp CGGGEEC----
T ss_pred ceeEEEecccC
Confidence 77788877763
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=1.6e-21 Score=207.29 Aligned_cols=277 Identities=16% Similarity=0.217 Sum_probs=200.2
Q ss_pred ccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcC-cC-cCCCCcccEEEccC
Q 003421 131 MKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFL-PS-LSKLFNLRFLILRD 208 (821)
Q Consensus 131 L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~l-p~-l~~l~~L~~L~l~~ 208 (821)
+++++++++.+...+..+ .++|++|++++| .+..+++..|.++++|++|++++|.++.+ |. ++.+++|++|++++
T Consensus 35 l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI--SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCccccCCCC--CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 899999988887766555 368999999985 46667665568899999999999998886 45 88899999999998
Q ss_pred CCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCC---CC-cCCCCCCceEeecCccccc
Q 003421 209 CSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRL---PK-FGYLKRLSRISIEGCKRFH 283 (821)
Q Consensus 209 ~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l---~~-~~~l~~L~~L~l~~~~~l~ 283 (821)
|.+. .+|. +. ++|++|++++|. ++.++...+..+++|++|++++|.++.. +. +..+
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--------------- 172 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--------------- 172 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC---------------
T ss_pred CcCC-ccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC---------------
Confidence 8754 4554 33 788888888876 6677766788888888888888877642 11 2222
Q ss_pred cccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCC
Q 003421 284 NFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNT 362 (821)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 362 (821)
+|++|++++|... .+| .+ .++|+.|++++|.+.. ..+..+..+++|+.|++++|
T Consensus 173 --------------------~L~~L~l~~n~l~-~l~~~~--~~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 173 --------------------KLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQA--IELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp --------------------CCSCCBCCSSBCS-SCCSSS--CSSCSCCBCCSSCCCC--CCTTSSTTCTTCSCCBCCSS
T ss_pred --------------------ccCEEECcCCCCC-ccCccc--cCCCCEEECCCCcCCc--cCHHHhcCCCCCCEEECCCC
Confidence 4555555555332 233 22 2689999999998665 56678889999999999999
Q ss_pred CCCCCCC--ccccccccEEEeecCCCcCcCCC-CCCCCCcCEEeccCCCCCCcCCC--CCC------CCCCCEEEeeCCC
Q 003421 363 KLKSLPP--LSNLHRLRKLFLKNCELLEELPK-MNGLENLEVLDLSGCSKLVEFPK--LKD------FPKLELLDISNTG 431 (821)
Q Consensus 363 ~l~~l~~--~~~l~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~c~~l~~i~~--l~~------l~~L~~L~l~~~~ 431 (821)
.++.++. +..+++|+.|++++|++. .+|. +..+++|++|++++|.. ..++. +.. .+.|+.+++++|+
T Consensus 228 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC-CBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred cCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC-CccChhHccccccccccccccceEeecCc
Confidence 9998876 889999999999999865 5655 88899999999999764 44443 333 4779999999998
Q ss_pred CCccCCCccccCCCCCchhhhhcccceeeeccc
Q 003421 432 IKVVPSDISVTSSNFTPDEKHRQASGVFNLVGS 464 (821)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~n 464 (821)
+......+. .+.....++.+++++|
T Consensus 306 ~~~~~~~~~--------~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 306 VPYWEVQPA--------TFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SCGGGSCGG--------GGTTBCCSTTEEC---
T ss_pred ccccccCcc--------cccccchhhhhhcccc
Confidence 853222222 2223345566666665
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=9.7e-23 Score=214.24 Aligned_cols=244 Identities=19% Similarity=0.237 Sum_probs=156.9
Q ss_pred CceeEEEecCCCccc--cccHHHHhcCcCCcEEEeec-CCC-CcccccccccccCCCCCCCccEEEcCCCCCCCC-cccc
Q 003421 74 DEVSTLLIDGDRLRL--EVDEGFLARMKQLHALAIFN-SGF-KSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNG-IGDI 148 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~-~~~-~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~i 148 (821)
.+++.|++++|.+.+ .++. .|.++++|++|++++ |.+ +.+|..+..+++ |++|++++|.+.+. +..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~-------L~~L~Ls~n~l~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-------LHYLYITHTNVSGAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTT-------CSEEEEEEECCEEECCGGG
T ss_pred ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChhHhcCCC-------CCEEECcCCeeCCcCCHHH
Confidence 478888888888876 5664 467788888888884 776 577778888877 88888888887743 3567
Q ss_pred cCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCC-cCcC-cCCCC-cccEEEccCCCCCCCCcc-cccCCcc
Q 003421 149 ELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMK-FLPS-LSKLF-NLRFLILRDCSSLQKLPR-INELVRL 224 (821)
Q Consensus 149 ~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~-~lp~-l~~l~-~L~~L~l~~~~~~~~l~~-l~~l~~L 224 (821)
.++++|++|++++|...+.+|..+ +.+++|++|++++|.++ .+|. ++.++ +|++|++++|.+.+.+|. +..+. |
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred hCCCCCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 778888888888765555666664 77888888888888777 5666 77776 777777777765544444 44444 5
Q ss_pred cEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCC
Q 003421 225 EIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVS 304 (821)
Q Consensus 225 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (821)
+.|++++|. ++...+..+..+++|++|++++|.++.
T Consensus 200 ~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------------------------- 235 (313)
T 1ogq_A 200 AFVDLSRNM-LEGDASVLFGSDKNTQKIHLAKNSLAF------------------------------------------- 235 (313)
T ss_dssp SEEECCSSE-EEECCGGGCCTTSCCSEEECCSSEECC-------------------------------------------
T ss_pred cEEECcCCc-ccCcCCHHHhcCCCCCEEECCCCceee-------------------------------------------
Confidence 666655554 332233445555555555555544432
Q ss_pred CcEEEecCCCCCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCC-CCCCccccccccEEEeec
Q 003421 305 LSELHLRDCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLK-SLPPLSNLHRLRKLFLKN 383 (821)
Q Consensus 305 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~l~~L~~L~l~~ 383 (821)
..+.+..+++|++|++++|.+.. .++..+..+++|+.|++++|.++ .+|....+++|+.|++.+
T Consensus 236 -------------~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 236 -------------DLGKVGLSKNLNGLDLRNNRIYG--TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300 (313)
T ss_dssp -------------BGGGCCCCTTCCEEECCSSCCEE--CCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCS
T ss_pred -------------ecCcccccCCCCEEECcCCcccC--cCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcC
Confidence 11222334455556665555432 45556666666677776666665 444455666666666666
Q ss_pred CCC
Q 003421 384 CEL 386 (821)
Q Consensus 384 ~~~ 386 (821)
|+.
T Consensus 301 N~~ 303 (313)
T 1ogq_A 301 NKC 303 (313)
T ss_dssp SSE
T ss_pred CCC
Confidence 653
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=4.3e-21 Score=212.33 Aligned_cols=241 Identities=20% Similarity=0.333 Sum_probs=179.8
Q ss_pred CCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCc-ccccCCCCccEEeccCCcCCCcCchHhhhCCCC
Q 003421 100 QLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIELLKKLTVLEISGANSVQKIPDKLLDEMTK 178 (821)
Q Consensus 100 ~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~ 178 (821)
..+.++..+.++..+|..+. .+ +++|++++|.+.... ..+.++++|++|++++| .+..++...|.++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~-------l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~ 113 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TN-------TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLAN 113 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TT-------CSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CC-------CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCcc
Confidence 35678888888888887665 34 889999998887765 56888999999999885 566777666788999
Q ss_pred ccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeecc
Q 003421 179 LQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLS 255 (821)
Q Consensus 179 L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 255 (821)
|++|++++|.++.+|. +..+++|++|++++|.+....+. +..+++|+.|++++|+.++.++...+..+++|++|+++
T Consensus 114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 9999999999998876 88899999999999876543333 78889999999998777888887788899999999999
Q ss_pred CcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC-CCCCCCCcCEEEec
Q 003421 256 RTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP-HIAGLKNLEVLDVS 334 (821)
Q Consensus 256 ~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~ 334 (821)
+|.++.+|.+..+++|+.|++++| ......+ .+..+++|+.|+++
T Consensus 194 ~n~l~~~~~~~~l~~L~~L~Ls~N----------------------------------~l~~~~~~~~~~l~~L~~L~L~ 239 (440)
T 3zyj_A 194 MCNLREIPNLTPLIKLDELDLSGN----------------------------------HLSAIRPGSFQGLMHLQKLWMI 239 (440)
T ss_dssp TSCCSSCCCCTTCSSCCEEECTTS----------------------------------CCCEECTTTTTTCTTCCEEECT
T ss_pred CCcCccccccCCCcccCEEECCCC----------------------------------ccCccChhhhccCccCCEEECC
Confidence 999888876655555555555544 2222222 45566677777777
Q ss_pred CCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--ccccccccEEEeecCCC
Q 003421 335 GTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLKNCEL 386 (821)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~ 386 (821)
+|.+.. ..+..+..+++|+.|++++|.++.++. +..+++|+.|++++|++
T Consensus 240 ~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 240 QSQIQV--IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TCCCCE--ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCceeE--EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 766544 455666677777777777777776666 56677777777777653
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.6e-22 Score=212.65 Aligned_cols=244 Identities=21% Similarity=0.253 Sum_probs=136.5
Q ss_pred cCCcEEEeecCCCC---cccccccccccCCCCCCCccEEEcCC-CCCCCCc-ccccCCCCccEEeccCCcCCCcCchHhh
Q 003421 99 KQLHALAIFNSGFK---SLDLSSKTEKKSEPEKLPMKLLVLRS-CNLLNGI-GDIELLKKLTVLEISGANSVQKIPDKLL 173 (821)
Q Consensus 99 ~~L~~L~l~~~~~~---~l~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~lp~~~~ 173 (821)
.++++|+++++.+. .+|..+..+++ |++|++++ |.+.+.. ..++++++|++|++++|...+.+|..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~-------L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~- 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPY-------LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL- 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTT-------CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCC-------CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-
Confidence 45666666666663 45555555555 66666653 4444322 345555555555555433323444432
Q ss_pred hCCCCccEEEecCCCCC-cCcC-cCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCCCCCccChhhccCCC-CCC
Q 003421 174 DEMTKLQSLNLSGCQMK-FLPS-LSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQ-HLQ 250 (821)
Q Consensus 174 ~~l~~L~~L~l~~~~i~-~lp~-l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~ 250 (821)
.++++|++|++++|.++ .+|. +..+++|++|++++|.+.+ .+| ..+..++ +|+
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----------------------~~p-~~l~~l~~~L~ 177 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG-----------------------AIP-DSYGSFSKLFT 177 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE-----------------------ECC-GGGGCCCTTCC
T ss_pred hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC-----------------------cCC-HHHhhhhhcCc
Confidence 44555555555555444 2343 4444444444444444333 333 3444444 555
Q ss_pred EeeccCcCCcC-CCC-cCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC-CCCCCCC
Q 003421 251 MIDLSRTQIKR-LPK-FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP-HIAGLKN 327 (821)
Q Consensus 251 ~L~l~~~~l~~-l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~ 327 (821)
+|++++|.+++ +|. +..++ |++|++++|......+ .+..+++
T Consensus 178 ~L~L~~N~l~~~~~~~~~~l~-----------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~ 222 (313)
T 1ogq_A 178 SMTISRNRLTGKIPPTFANLN-----------------------------------LAFVDLSRNMLEGDASVLFGSDKN 222 (313)
T ss_dssp EEECCSSEEEEECCGGGGGCC-----------------------------------CSEEECCSSEEEECCGGGCCTTSC
T ss_pred EEECcCCeeeccCChHHhCCc-----------------------------------ccEEECcCCcccCcCCHHHhcCCC
Confidence 55555555542 221 22211 3333333332222222 4555667
Q ss_pred cCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCC-CCCC-ccccccccEEEeecCCCcCcCCCCCCCCCcCEEecc
Q 003421 328 LEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLK-SLPP-LSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDLS 405 (821)
Q Consensus 328 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~-~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~ 405 (821)
|+.|++++|.+.. ..+ .+..+++|+.|++++|.++ .+|. +..+++|++|++++|++.+.+|....+++|+.+++.
T Consensus 223 L~~L~L~~N~l~~--~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~ 299 (313)
T 1ogq_A 223 TQKIHLAKNSLAF--DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299 (313)
T ss_dssp CSEEECCSSEECC--BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred CCEEECCCCceee--ecC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhc
Confidence 7777777776543 233 3667788888888888887 6666 788888888888888877777777778888888888
Q ss_pred CCCCCCc
Q 003421 406 GCSKLVE 412 (821)
Q Consensus 406 ~c~~l~~ 412 (821)
+|+.+..
T Consensus 300 ~N~~lc~ 306 (313)
T 1ogq_A 300 NNKCLCG 306 (313)
T ss_dssp SSSEEES
T ss_pred CCCCccC
Confidence 8764443
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=2e-21 Score=205.48 Aligned_cols=157 Identities=15% Similarity=0.277 Sum_probs=103.1
Q ss_pred cCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCC
Q 003421 97 RMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEM 176 (821)
Q Consensus 97 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l 176 (821)
..+++++|++++|.+..+|..+..+++ |++|++++|.+...+..++++++|++|++++| .+..+|..+ +++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~-------L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l-~~l 149 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSH-------LQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASI-ASL 149 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTT-------CSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGG-GGC
T ss_pred cccceeEEEccCCCchhcChhhhhCCC-------CCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHH-hcC
Confidence 458899999999999999988888888 99999999988866667888888888888875 445777765 778
Q ss_pred CCccEEEecCCCC-CcCcC-cCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCCCCCccChhhccCCCCCCEeec
Q 003421 177 TKLQSLNLSGCQM-KFLPS-LSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDL 254 (821)
Q Consensus 177 ~~L~~L~l~~~~i-~~lp~-l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 254 (821)
++|++|++++|.+ ..+|. ++. ..+ ...+..+++|+.|++++|. ++.+| ..++.+++|++|++
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~------~~~--------~~~~~~l~~L~~L~L~~n~-l~~lp-~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLAS------TDA--------SGEHQGLVNLQSLRLEWTG-IRSLP-ASIANLQNLKSLKI 213 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEE------EC---------CCCEEESTTCCEEEEEEEC-CCCCC-GGGGGCTTCCEEEE
T ss_pred cCCCEEECCCCCCccccChhHhh------ccc--------hhhhccCCCCCEEECcCCC-cCcch-HhhcCCCCCCEEEc
Confidence 8888888888643 44665 433 000 0013345555555555554 44555 34556666666666
Q ss_pred cCcCCcCCCC-cCCCCCCceEeecC
Q 003421 255 SRTQIKRLPK-FGYLKRLSRISIEG 278 (821)
Q Consensus 255 ~~~~l~~l~~-~~~l~~L~~L~l~~ 278 (821)
++|.++.+|. +..+++|+.|++++
T Consensus 214 ~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 214 RNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp ESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred cCCCCCcCchhhccCCCCCEEECcC
Confidence 6666665443 33444444444433
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=5.1e-21 Score=212.52 Aligned_cols=240 Identities=25% Similarity=0.320 Sum_probs=167.7
Q ss_pred CCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCc-ccccCCCCccEEeccCCcCCCcCchHhhhCCCC
Q 003421 100 QLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIELLKKLTVLEISGANSVQKIPDKLLDEMTK 178 (821)
Q Consensus 100 ~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~ 178 (821)
..+.++.++.++..+|..+. .+ +++|++++|.+.... ..+.++++|++|++++| .+..++...|.++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~-------l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~ 124 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SN-------TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLAS 124 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TT-------CSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred CCcEEEECCCCcCccCCCCC--CC-------ccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCccc
Confidence 34667777777777776554 34 888888888887654 46788888888888875 556666555688888
Q ss_pred ccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeecc
Q 003421 179 LQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLS 255 (821)
Q Consensus 179 L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 255 (821)
|++|++++|.++.+|. +..+++|++|++++|.+....+. +.++++|+.|++++|+.++.++...+..+++|++|+++
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence 8888888888888776 78888888888888875543332 67888888888888777888876778888889999988
Q ss_pred CcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC-CCCCCCCcCEEEec
Q 003421 256 RTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP-HIAGLKNLEVLDVS 334 (821)
Q Consensus 256 ~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~ 334 (821)
+|.++.+|.+..+++|+.|++++ |......+ .+..+++|+.|+++
T Consensus 205 ~n~l~~~~~~~~l~~L~~L~Ls~----------------------------------N~l~~~~~~~~~~l~~L~~L~L~ 250 (452)
T 3zyi_A 205 MCNIKDMPNLTPLVGLEELEMSG----------------------------------NHFPEIRPGSFHGLSSLKKLWVM 250 (452)
T ss_dssp TSCCSSCCCCTTCTTCCEEECTT----------------------------------SCCSEECGGGGTTCTTCCEEECT
T ss_pred CCcccccccccccccccEEECcC----------------------------------CcCcccCcccccCccCCCEEEeC
Confidence 88888776655544444444443 32222222 45556666666666
Q ss_pred CCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--ccccccccEEEeecCC
Q 003421 335 GTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLKNCE 385 (821)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~ 385 (821)
+|.+.. ..+..+..+++|+.|++++|.++.++. +..+++|+.|++++|+
T Consensus 251 ~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 251 NSQVSL--IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TSCCCE--ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCcCce--ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 666443 445556666667777777776666665 5566666666666665
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.6e-21 Score=206.16 Aligned_cols=198 Identities=24% Similarity=0.334 Sum_probs=165.4
Q ss_pred CCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCC
Q 003421 73 WDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLK 152 (821)
Q Consensus 73 ~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~ 152 (821)
.+.++.|++++|.+. .++.. +.++++|++|++++|.+..+|..++.+.+ |++|++++|.+...+..+++++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~-------L~~L~Ls~n~l~~lp~~l~~l~ 150 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQ-AFRLSHLQHMTIDAAGLMELPDTMQQFAG-------LETLTLARNPLRALPASIASLN 150 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSC-GGGGTTCSEEEEESSCCCCCCSCGGGGTT-------CSEEEEESCCCCCCCGGGGGCT
T ss_pred ccceeEEEccCCCch-hcChh-hhhCCCCCEEECCCCCccchhHHHhccCC-------CCEEECCCCccccCcHHHhcCc
Confidence 468999999999997 77766 45699999999999999999999999999 9999999999997777899999
Q ss_pred CccEEeccCCcCCCcCchHh--------hhCCCCccEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCcccccCCc
Q 003421 153 KLTVLEISGANSVQKIPDKL--------LDEMTKLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLPRINELVR 223 (821)
Q Consensus 153 ~L~~L~l~~~~~~~~lp~~~--------~~~l~~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~~l~~l~~ 223 (821)
+|++|++++|+..+.+|..+ +..+++|++|++++|.++.+|. ++.+++|++|++++|.+....+.+..+++
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~ 230 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence 99999999988999999875 2349999999999999999998 99999999999999987754445889999
Q ss_pred ccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcC-CCC-cCCCCCCceEeecCcc
Q 003421 224 LEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKR-LPK-FGYLKRLSRISIEGCK 280 (821)
Q Consensus 224 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-l~~-~~~l~~L~~L~l~~~~ 280 (821)
|+.|++++|...+.+| ..++.+++|++|++++|.+.+ +|. +..+++|+.|++++|.
T Consensus 231 L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 231 LEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CCEEECTTCTTCCBCC-CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CCEEECcCCcchhhhH-HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 9999999988777776 678888999999998876554 443 4444444444444443
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=4e-24 Score=238.95 Aligned_cols=344 Identities=17% Similarity=0.138 Sum_probs=228.7
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCC-----cccccccccccCCCCCCCccEEEcCCCCCCCCc-cc
Q 003421 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFK-----SLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GD 147 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~ 147 (821)
++++.|+++++.+.......+|..+++|++|++++|.++ .++..+..+++ |++|++++|.+.+.. ..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~-------L~~L~Ls~n~l~~~~~~~ 75 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA-------LAELNLRSNELGDVGVHC 75 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTT-------CCEEECTTCCCHHHHHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCC-------cCEEeCCCCcCChHHHHH
Confidence 578999999999875555566889999999999999985 56777778888 999999999876532 22
Q ss_pred c-cCCC----CccEEeccCCcCCC----cCchHhhhCCCCccEEEecCCCCCcC-----cC--cCCCCcccEEEccCCCC
Q 003421 148 I-ELLK----KLTVLEISGANSVQ----KIPDKLLDEMTKLQSLNLSGCQMKFL-----PS--LSKLFNLRFLILRDCSS 211 (821)
Q Consensus 148 i-~~l~----~L~~L~l~~~~~~~----~lp~~~~~~l~~L~~L~l~~~~i~~l-----p~--l~~l~~L~~L~l~~~~~ 211 (821)
+ ..++ +|++|++++|.... .++.. +..+++|++|++++|.+++. .. ....++|++|++++|.+
T Consensus 76 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 76 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH-TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH-HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence 2 3344 79999999875332 33444 58999999999999998752 22 33467899999999976
Q ss_pred CCCC----cc-cccCCcccEEeecCCCCCCccChhhcc-----CCCCCCEeeccCcCCcCC-----CC-cCCCCCCceEe
Q 003421 212 LQKL----PR-INELVRLEIIDLSGATSLTFFPEQDLS-----KHQHLQMIDLSRTQIKRL-----PK-FGYLKRLSRIS 275 (821)
Q Consensus 212 ~~~l----~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~l~~l-----~~-~~~l~~L~~L~ 275 (821)
.... +. +..+++|++|++++|. ++......+. ..++|++|++++|.++.. +. +..+++|++|+
T Consensus 155 ~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 155 SAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233 (461)
T ss_dssp BGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEe
Confidence 6532 33 5778999999999987 5443223332 366999999999988863 33 56778888888
Q ss_pred ecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCC----CC-CCCCCCCcCEEEecCCCCCCcccChhhhc-
Q 003421 276 IEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKR----LP-HIAGLKNLEVLDVSGTSDSKFAISDESFH- 349 (821)
Q Consensus 276 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~- 349 (821)
+++|.. ..... ..+ .......+++|++|++++|..... ++ .+..+++|+.|++++|.+.. .....+.
T Consensus 234 Ls~n~l-~~~~~-~~l---~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~--~~~~~l~~ 306 (461)
T 1z7x_W 234 LGSNKL-GDVGM-AEL---CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD--EGARLLCE 306 (461)
T ss_dssp CCSSBC-HHHHH-HHH---HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH--HHHHHHHH
T ss_pred ccCCcC-ChHHH-HHH---HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch--HHHHHHHH
Confidence 888742 11100 000 000022456788888888744332 22 44557778888888776432 1111221
Q ss_pred ----CCCCCcEEEecCCCCCCC-----CC-ccccccccEEEeecCCCcCcCCC-----CC-CCCCcCEEeccCCCCCC--
Q 003421 350 ----DLDYLRELNLSNTKLKSL-----PP-LSNLHRLRKLFLKNCELLEELPK-----MN-GLENLEVLDLSGCSKLV-- 411 (821)
Q Consensus 350 ----~l~~L~~L~l~~~~l~~l-----~~-~~~l~~L~~L~l~~~~~~~~l~~-----~~-~l~~L~~L~l~~c~~l~-- 411 (821)
..++|+.|++++|.++.. +. +..+++|++|++++|.+.+..+. +. ..++|++|++++|....
T Consensus 307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 386 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 386 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh
Confidence 235788888888877643 22 55667788888887765433211 11 25677888887775443
Q ss_pred --cCCC-CCCCCCCCEEEeeCCCCC
Q 003421 412 --EFPK-LKDFPKLELLDISNTGIK 433 (821)
Q Consensus 412 --~i~~-l~~l~~L~~L~l~~~~~~ 433 (821)
.++. +..+++|++|++++|+++
T Consensus 387 ~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 387 CSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHHHHHhCCCccEEECCCCCCC
Confidence 3444 556777777777777764
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=2.1e-21 Score=208.29 Aligned_cols=273 Identities=18% Similarity=0.218 Sum_probs=186.3
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccc-cccccccCCCCCCCccEEEcCCCCCCCCc-ccccCC
Q 003421 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDL-SSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIELL 151 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~l 151 (821)
+.....+.+++.+. .+|.++ .++|++|++++|.++.++. .+..+++ |++|++++|.+.+.. ..+.++
T Consensus 31 ~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~-------L~~L~L~~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 31 DRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVN-------LQALVLTSNGINTIEEDSFSSL 99 (353)
T ss_dssp CTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTT-------CCEEECTTSCCCEECTTTTTTC
T ss_pred CCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCC-------CCEEECCCCccCccCHhhcCCC
Confidence 34445777788776 677543 2578888888888877765 6777777 888888888887655 458888
Q ss_pred CCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC---cCCCCcccEEEccCCCCCCCCc-c-cccCCcccE
Q 003421 152 KKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS---LSKLFNLRFLILRDCSSLQKLP-R-INELVRLEI 226 (821)
Q Consensus 152 ~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~---l~~l~~L~~L~l~~~~~~~~l~-~-l~~l~~L~~ 226 (821)
++|++|++++| .+..+|...++++++|++|++++|.++.+|. +..+++|++|++++|.....++ . +.++++|+.
T Consensus 100 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 100 GSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp TTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 88888888874 5667887766888888888888888888764 7788888888888875444443 3 678888888
Q ss_pred EeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCC--cCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCC
Q 003421 227 IDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK--FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVS 304 (821)
Q Consensus 227 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (821)
|++++|. ++.+.+..++.+++|++|++++|.++.++. +..+++|+.|++++|..-. .+
T Consensus 179 L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~------------------ 238 (353)
T 2z80_A 179 LEIDASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT-FH------------------ 238 (353)
T ss_dssp EEEEETT-CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT-CC------------------
T ss_pred EECCCCC-cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc-cc------------------
Confidence 8888876 555544678888888888888888776654 3345666666666543110 00
Q ss_pred CcEEEecCCCCCCCCCCCCCCCCcCEEEecCCCCCCc--ccChhhhcCCCCCcEEEecCCCCCCCCC--ccccccccEEE
Q 003421 305 LSELHLRDCPTLKRLPHIAGLKNLEVLDVSGTSDSKF--AISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLF 380 (821)
Q Consensus 305 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~ 380 (821)
...++.......++.+++.++.+... ..++..+..+++|+.|++++|.++.+|. +..+++|++|+
T Consensus 239 -----------~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 307 (353)
T 2z80_A 239 -----------FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307 (353)
T ss_dssp -----------CC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred -----------ccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEE
Confidence 00011122344566677766654321 1245566777778888888887777776 46677777777
Q ss_pred eecCCCcCc
Q 003421 381 LKNCELLEE 389 (821)
Q Consensus 381 l~~~~~~~~ 389 (821)
+++|++...
T Consensus 308 L~~N~~~~~ 316 (353)
T 2z80_A 308 LHTNPWDCS 316 (353)
T ss_dssp CCSSCBCCC
T ss_pred eeCCCccCc
Confidence 777764443
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=202.12 Aligned_cols=262 Identities=18% Similarity=0.232 Sum_probs=156.0
Q ss_pred cEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecC
Q 003421 155 TVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSG 231 (821)
Q Consensus 155 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~ 231 (821)
...+.++ +.+..+|..+ .++|++|++++|.++.+|. +..+++|++|++++|.+....+. +.++++|++|++++
T Consensus 34 ~~c~~~~-~~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 34 GICKGSS-GSLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp SEEECCS-TTCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEeeCCC-CCcccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 3344443 3444555433 2355555555555555443 55555555555555544433333 45555555666555
Q ss_pred CCCCCccChhhccCCCCCCEeeccCcCCcCCCC---cCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEE
Q 003421 232 ATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK---FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSEL 308 (821)
Q Consensus 232 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L 308 (821)
|. ++.++...++.+++|++|++++|.++.++. +..+++|++|++++|..+..++. ..+..+++|++|
T Consensus 110 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~---------~~~~~l~~L~~L 179 (353)
T 2z80_A 110 NY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR---------KDFAGLTFLEEL 179 (353)
T ss_dssp SC-CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT---------TTTTTCCEEEEE
T ss_pred Cc-CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH---------HHccCCCCCCEE
Confidence 54 455554446666666666666666666544 55566666666665543332211 114456677777
Q ss_pred EecCCCCCCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC-----ccccccccEEEee
Q 003421 309 HLRDCPTLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP-----LSNLHRLRKLFLK 382 (821)
Q Consensus 309 ~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-----~~~l~~L~~L~l~ 382 (821)
++++|......+ .+..+++|+.|++++|.... .....+..+++|+.|++++|.+++++. ......++.+++.
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL--LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTT--HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCcccc--chhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 777776555444 67778888888888887533 333445567888888888888876553 2345667777777
Q ss_pred cCCCcC----cCCC-CCCCCCcCEEeccCCCCCCcCCC--CCCCCCCCEEEeeCCCCC
Q 003421 383 NCELLE----ELPK-MNGLENLEVLDLSGCSKLVEFPK--LKDFPKLELLDISNTGIK 433 (821)
Q Consensus 383 ~~~~~~----~l~~-~~~l~~L~~L~l~~c~~l~~i~~--l~~l~~L~~L~l~~~~~~ 433 (821)
++.+.. .+|. +..+++|++|++++|.. ..+|. +..+++|++|++++|++.
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCCC-CccCHHHHhcCCCCCEEEeeCCCcc
Confidence 776443 1332 56678888888887653 45665 577888888888887764
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=5.4e-20 Score=193.14 Aligned_cols=144 Identities=18% Similarity=0.104 Sum_probs=82.2
Q ss_pred cEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcc-cccCCCCccEEeccCCcCCCcC---chHhhhCCC
Q 003421 102 HALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIELLKKLTVLEISGANSVQKI---PDKLLDEMT 177 (821)
Q Consensus 102 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~l~~~~~~~~l---p~~~~~~l~ 177 (821)
+.+++++++++.+|..+. .+ |++|++++|.+...+. .+.++++|++|++++|. +..+ |..+ ..++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~-------l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-~~~~ 78 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SS-------ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSD-FGTT 78 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TT-------CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHH-HSCS
T ss_pred CEEEcCCCCcccCCCCCC--CC-------CCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCccccc-cccc
Confidence 456777777777776443 34 7777777777765554 35677777777777643 3333 4444 5677
Q ss_pred CccEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCc--ccccCCcccEEeecCCCCCCccChhhccCCCCCCEeec
Q 003421 178 KLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLP--RINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDL 254 (821)
Q Consensus 178 ~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 254 (821)
+|++|++++|.+..+|. +..+++|++|++++|.+....+ .+..+++|+.|++++|. ++...+..+..+++|++|++
T Consensus 79 ~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEEC
T ss_pred ccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEEC
Confidence 77777777777777766 6677777777777665433222 23444444444444443 22222233333444444444
Q ss_pred cCc
Q 003421 255 SRT 257 (821)
Q Consensus 255 ~~~ 257 (821)
++|
T Consensus 158 ~~n 160 (306)
T 2z66_A 158 AGN 160 (306)
T ss_dssp TTC
T ss_pred CCC
Confidence 433
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=1.5e-19 Score=205.57 Aligned_cols=260 Identities=23% Similarity=0.223 Sum_probs=137.3
Q ss_pred CCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCc
Q 003421 100 QLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKL 179 (821)
Q Consensus 100 ~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L 179 (821)
++++|+++++.++.+|..+. ++ |++|++++|.+...+. .+++|++|++++| .+..+|. .+++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~-------L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L 103 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AH-------ITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV----LPPGL 103 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TT-------CSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC----CCTTC
T ss_pred CCcEEEecCCCcCccChhhC--CC-------CcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC----CCCCC
Confidence 34555555555555544433 33 5555555554443222 3445555555543 2344443 34555
Q ss_pred cEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCC
Q 003421 180 QSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQI 259 (821)
Q Consensus 180 ~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 259 (821)
++|++++|.++.+|. .+++|++|++++|.+.. +|. .+++|++|++++|. ++.++. .+.+|+.|++++|.+
T Consensus 104 ~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 104 LELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTS-LPV--LPPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQL 173 (622)
T ss_dssp CEEEECSCCCCCCCC--CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCC
T ss_pred CEEECcCCcCCCCCC--CCCCcCEEECCCCCCCc-CCC--CCCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCC
Confidence 555555555555543 33455555555544322 232 12455555555543 333331 234555555555555
Q ss_pred cCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcCEEEecCCCCC
Q 003421 260 KRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLPHIAGLKNLEVLDVSGTSDS 339 (821)
Q Consensus 260 ~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 339 (821)
+.+| ..+++|+.|++++|. +..+ ...+++|+.|++.+|.. ..++. .+++|+.|++++|.+.
T Consensus 174 ~~l~--~~~~~L~~L~Ls~N~-l~~l-------------~~~~~~L~~L~L~~N~l-~~l~~--~~~~L~~L~Ls~N~L~ 234 (622)
T 3g06_A 174 TSLP--MLPSGLQELSVSDNQ-LASL-------------PTLPSELYKLWAYNNRL-TSLPA--LPSGLKELIVSGNRLT 234 (622)
T ss_dssp SCCC--CCCTTCCEEECCSSC-CSCC-------------CCCCTTCCEEECCSSCC-SSCCC--CCTTCCEEECCSSCCS
T ss_pred CCCc--ccCCCCcEEECCCCC-CCCC-------------CCccchhhEEECcCCcc-cccCC--CCCCCCEEEccCCccC
Confidence 5555 334555555555543 1111 11234566666666533 23332 2356777777777644
Q ss_pred CcccChhhhcCCCCCcEEEecCCCCCCCCCccccccccEEEeecCCCcCcCCC-CCCCCCcCEEeccCCCCCCcCC
Q 003421 340 KFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPK-MNGLENLEVLDLSGCSKLVEFP 414 (821)
Q Consensus 340 ~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~c~~l~~i~ 414 (821)
. ++ ..+++|+.|++++|.++.+|. .+++|+.|++++|.+. .+|. +..+++|+.|++++|+..+..+
T Consensus 235 ~---lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 235 S---LP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp C---CC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred c---CC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 3 22 345677777777777777776 5677777888777654 4544 6677778888887776555443
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=1e-19 Score=201.20 Aligned_cols=238 Identities=22% Similarity=0.324 Sum_probs=127.9
Q ss_pred ccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeec
Q 003421 154 LTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLS 230 (821)
Q Consensus 154 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~ 230 (821)
.+.++..+ ..+..+|..+ .+++++|++++|.++.++. +..+++|++|++++|.+....+. +.++++|+.|+++
T Consensus 45 ~~~v~c~~-~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVR-KNLREVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCS-CCCSSCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCC-CCcCcCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 34455544 3455666544 2566666666666666543 66666666666666654433333 5666666666666
Q ss_pred CCCCCCccChhhccCCCCCCEeeccCcCCcCCCC--cCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEE
Q 003421 231 GATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK--FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSEL 308 (821)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L 308 (821)
+|. ++.++...+..+++|++|++++|.++.++. +..+++|+.|+++++..+..++.. .+..+++|++|
T Consensus 121 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---------~~~~l~~L~~L 190 (440)
T 3zyj_A 121 DNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG---------AFEGLSNLRYL 190 (440)
T ss_dssp SSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT---------TTTTCSSCCEE
T ss_pred CCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc---------hhhcccccCee
Confidence 665 556665566777777777777777776554 555555555555554333322210 02233444444
Q ss_pred EecCCCCCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--ccccccccEEEeecCCC
Q 003421 309 HLRDCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLKNCEL 386 (821)
Q Consensus 309 ~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~ 386 (821)
++++|. +..+|.+..+ ++|+.|++++|.++.+++ +..+++|+.|++++|++
T Consensus 191 ~L~~n~-l~~~~~~~~l--------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 191 NLAMCN-LREIPNLTPL--------------------------IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp ECTTSC-CSSCCCCTTC--------------------------SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred cCCCCc-CccccccCCC--------------------------cccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence 444442 2233334444 455555555555444432 45555555555555544
Q ss_pred cCcCCC-CCCCCCcCEEeccCCCCCCcCCC--CCCCCCCCEEEeeCCCCC
Q 003421 387 LEELPK-MNGLENLEVLDLSGCSKLVEFPK--LKDFPKLELLDISNTGIK 433 (821)
Q Consensus 387 ~~~l~~-~~~l~~L~~L~l~~c~~l~~i~~--l~~l~~L~~L~l~~~~~~ 433 (821)
....+. +..+++|++|++++|... .++. +..+++|+.|++++|++.
T Consensus 244 ~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 244 QVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCEE
T ss_pred eEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCcc
Confidence 333332 455566666666665433 3333 556666666666666653
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=1.2e-19 Score=201.43 Aligned_cols=238 Identities=23% Similarity=0.329 Sum_probs=119.9
Q ss_pred cEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecC
Q 003421 155 TVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSG 231 (821)
Q Consensus 155 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~ 231 (821)
+.++..+ ..+..+|..+ .+++++|++++|.++.++. |..+++|++|++++|.+....+. +.++++|++|++++
T Consensus 57 ~~v~c~~-~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTR-RGLSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCS-SCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECC-CCcCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 3444443 3444555433 2455556666655555432 55556666666665554433333 45566666666665
Q ss_pred CCCCCccChhhccCCCCCCEeeccCcCCcCCCC--cCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEE
Q 003421 232 ATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK--FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELH 309 (821)
Q Consensus 232 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 309 (821)
|. ++.++...+..+++|++|++++|.++.++. +..+++|+.|++++|..+..++.. .+..+++|++|+
T Consensus 133 n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---------~~~~l~~L~~L~ 202 (452)
T 3zyi_A 133 NW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG---------AFEGLFNLKYLN 202 (452)
T ss_dssp SC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT---------TTTTCTTCCEEE
T ss_pred Cc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh---------hccCCCCCCEEE
Confidence 54 555554556666677777777776666553 455555555555554433332210 023344455555
Q ss_pred ecCCCCCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCCccccccccEEEeecCCCcCc
Q 003421 310 LRDCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEE 389 (821)
Q Consensus 310 l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~ 389 (821)
+++|. +..++.+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++.++
T Consensus 203 L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~--------------------- 258 (452)
T 3zyi_A 203 LGMCN-IKDMPNLTPLVGLEELEMSGNHFPE--IRPGSFHGLSSLKKLWVMNSQVSLIE--------------------- 258 (452)
T ss_dssp CTTSC-CSSCCCCTTCTTCCEEECTTSCCSE--ECGGGGTTCTTCCEEECTTSCCCEEC---------------------
T ss_pred CCCCc-ccccccccccccccEEECcCCcCcc--cCcccccCccCCCEEEeCCCcCceEC---------------------
Confidence 55442 2233444445555555555554332 33444444444444444444444332
Q ss_pred CCC-CCCCCCcCEEeccCCCCCCcCCC--CCCCCCCCEEEeeCCCC
Q 003421 390 LPK-MNGLENLEVLDLSGCSKLVEFPK--LKDFPKLELLDISNTGI 432 (821)
Q Consensus 390 l~~-~~~l~~L~~L~l~~c~~l~~i~~--l~~l~~L~~L~l~~~~~ 432 (821)
+. +..+++|+.|++++|.. ..++. +..+++|+.|++++|++
T Consensus 259 -~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 259 -RNAFDGLASLVELNLAHNNL-SSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp -TTTTTTCTTCCEEECCSSCC-SCCCTTSSTTCTTCCEEECCSSCE
T ss_pred -HHHhcCCCCCCEEECCCCcC-CccChHHhccccCCCEEEccCCCc
Confidence 22 44455555555555432 23332 55566666666666655
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=2.7e-20 Score=195.40 Aligned_cols=239 Identities=24% Similarity=0.344 Sum_probs=129.5
Q ss_pred cEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcC---cC-cCCCCcccEEEcc
Q 003421 132 KLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFL---PS-LSKLFNLRFLILR 207 (821)
Q Consensus 132 ~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~l---p~-l~~l~~L~~L~l~ 207 (821)
+.++.+++.+...+..+ .++|++|++++| .+..+|..+|+++++|++|++++|.++.+ +. +..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCC--CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 44555555554444322 245555555553 34455555445555555555555555433 22 3444555555555
Q ss_pred CCCCCCCCcccccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCC---cCCCCCCceEeecCcccccc
Q 003421 208 DCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK---FGYLKRLSRISIEGCKRFHN 284 (821)
Q Consensus 208 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~---~~~l~~L~~L~l~~~~~l~~ 284 (821)
+|. +..++ ..+..+++|++|++++|.++.++. +..++
T Consensus 87 ~n~------------------------i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~--------------- 126 (306)
T 2z66_A 87 FNG------------------------VITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR--------------- 126 (306)
T ss_dssp SCS------------------------EEEEE-EEEETCTTCCEEECTTSEEESSTTTTTTTTCT---------------
T ss_pred CCc------------------------cccCh-hhcCCCCCCCEEECCCCcccccccchhhhhcc---------------
Confidence 443 33333 234455555555555555554432 22222
Q ss_pred ccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCC
Q 003421 285 FHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTK 363 (821)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 363 (821)
+|++|++++|......+ .+..+++|+.|++++|.... ...+..+..+++|+.|++++|.
T Consensus 127 -------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 127 -------------------NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp -------------------TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSC
T ss_pred -------------------CCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc-ccchhHHhhCcCCCEEECCCCC
Confidence 33333333332222222 34445556666666555332 2345556666677777777776
Q ss_pred CCCCCC--ccccccccEEEeecCCCcCcCC-CCCCCCCcCEEeccCCCCCCcCCC-CCCCC-CCCEEEeeCCCCC
Q 003421 364 LKSLPP--LSNLHRLRKLFLKNCELLEELP-KMNGLENLEVLDLSGCSKLVEFPK-LKDFP-KLELLDISNTGIK 433 (821)
Q Consensus 364 l~~l~~--~~~l~~L~~L~l~~~~~~~~l~-~~~~l~~L~~L~l~~c~~l~~i~~-l~~l~-~L~~L~l~~~~~~ 433 (821)
++++++ +..+++|++|++++|.+.+..+ .+..+++|++|++++|...+..+. +..++ +|++|++++|+++
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 665533 6667777777777776544333 256677888888887766665555 66674 7888888888875
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=3.9e-19 Score=202.21 Aligned_cols=259 Identities=22% Similarity=0.195 Sum_probs=155.0
Q ss_pred ceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCc
Q 003421 75 EVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKL 154 (821)
Q Consensus 75 ~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L 154 (821)
+++.|++++|.+. .++..++ ++|++|++++|.++.+|. .+++ |++|++++|.+...+. .+++|
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~-------L~~L~Ls~N~l~~lp~---~l~~L 103 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA---LPPE-------LRTLEVSGNQLTSLPV---LPPGL 103 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC---CCTT-------CCEEEECSCCCSCCCC---CCTTC
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC---cCCC-------CCEEEcCCCcCCcCCC---CCCCC
Confidence 4666777777665 5554332 567777777777766665 3344 7777777776654433 55667
Q ss_pred cEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCCC
Q 003421 155 TVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGATS 234 (821)
Q Consensus 155 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 234 (821)
++|++++| .+..+|. .+++|++|++++|+++.+|. .+++|++|++++|.+.. +|. .+.+|+.|++++|.
T Consensus 104 ~~L~Ls~N-~l~~l~~----~l~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~-l~~--~~~~L~~L~L~~N~- 172 (622)
T 3g06_A 104 LELSIFSN-PLTHLPA----LPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLAS-LPA--LPSELCKLWAYNNQ- 172 (622)
T ss_dssp CEEEECSC-CCCCCCC----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSC-
T ss_pred CEEECcCC-cCCCCCC----CCCCcCEEECCCCCCCcCCC--CCCCCCEEECcCCcCCC-cCC--ccCCCCEEECCCCC-
Confidence 77777663 4555554 45667777777777766665 22667777777665432 332 23566677776665
Q ss_pred CCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCC
Q 003421 235 LTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCP 314 (821)
Q Consensus 235 ~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 314 (821)
++.++ ..+++|+.|++++|.++.+|. .+++|+.|++.+|. +..++ ..+++|+.|++++|.
T Consensus 173 l~~l~----~~~~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~-l~~l~-------------~~~~~L~~L~Ls~N~ 232 (622)
T 3g06_A 173 LTSLP----MLPSGLQELSVSDNQLASLPT--LPSELYKLWAYNNR-LTSLP-------------ALPSGLKELIVSGNR 232 (622)
T ss_dssp CSCCC----CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CSSCC-------------CCCTTCCEEECCSSC
T ss_pred CCCCc----ccCCCCcEEECCCCCCCCCCC--ccchhhEEECcCCc-ccccC-------------CCCCCCCEEEccCCc
Confidence 55554 335667777777777766654 23566677666653 22221 123567777777663
Q ss_pred CCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC-ccccccccEEEeecCCCcCcC
Q 003421 315 TLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP-LSNLHRLRKLFLKNCELLEEL 390 (821)
Q Consensus 315 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l~~~~~~~~l 390 (821)
. ..+| ..+++|+.|++++|.+.. ++. .+++|+.|++++|.++.+|. +..+++|+.|++++|++.+..
T Consensus 233 L-~~lp--~~l~~L~~L~Ls~N~L~~---lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 233 L-TSLP--VLPSELKELMVSGNRLTS---LPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp C-SCCC--CCCTTCCEEECCSSCCSC---CCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred c-CcCC--CCCCcCcEEECCCCCCCc---CCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcC
Confidence 3 3344 345667777777766443 222 44667777777777766666 666777777777777655443
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=7.6e-20 Score=189.79 Aligned_cols=197 Identities=20% Similarity=0.280 Sum_probs=92.1
Q ss_pred ccEEEcCCCCCCCCc-ccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCC-CCcC-cC-cCCCCcccEEEc
Q 003421 131 MKLLVLRSCNLLNGI-GDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQ-MKFL-PS-LSKLFNLRFLIL 206 (821)
Q Consensus 131 L~~L~l~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~-i~~l-p~-l~~l~~L~~L~l 206 (821)
|++|++++|.+...+ ..+..+++|++|++++| .+..+++..|+.+++|++|++++|. +..+ |. +..+++|++|++
T Consensus 34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred ceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 555555555444433 23444555555555543 2333322223455555555555554 4444 22 455555555555
Q ss_pred cCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCC--cCCCCCCceEeecCccccc
Q 003421 207 RDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK--FGYLKRLSRISIEGCKRFH 283 (821)
Q Consensus 207 ~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~ 283 (821)
++|.+....+. +..+++|++|++++|. ++.++...++.+++|++|++++|.++.++. +..+++
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~------------- 178 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS------------- 178 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-------------
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc-------------
Confidence 55444333333 3445555555555444 344443445555555555555555554432 222232
Q ss_pred cccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCC
Q 003421 284 NFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNT 362 (821)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 362 (821)
|++|++++|......+ .+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|
T Consensus 179 ---------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 179 ---------------------LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA--LPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp ---------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC--CCHHHHTTCTTCCEEECCSS
T ss_pred ---------------------cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc--CCHHHcccCcccCEEeccCC
Confidence 3333333332222212 34445555556665555433 44445566666666666666
Q ss_pred CCC
Q 003421 363 KLK 365 (821)
Q Consensus 363 ~l~ 365 (821)
.+.
T Consensus 236 ~~~ 238 (285)
T 1ozn_A 236 PWV 238 (285)
T ss_dssp CEE
T ss_pred Ccc
Confidence 554
No 61
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=1.6e-21 Score=225.28 Aligned_cols=368 Identities=13% Similarity=0.042 Sum_probs=234.7
Q ss_pred CCCceeEEEecCCCccccccHHHHhcCcC-CcEEEeecCCC---CcccccccccccCCCCCCCccEEEcCCCCCCCCc--
Q 003421 72 KWDEVSTLLIDGDRLRLEVDEGFLARMKQ-LHALAIFNSGF---KSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-- 145 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~~~~~~~~~~l~~-L~~L~l~~~~~---~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-- 145 (821)
.+++|+.|+++++.+.+.....+...+++ |++|+++++.. ..++.....+++ |++|++++|.+.+..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~-------L~~L~L~~~~~~~~~~~ 182 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRK-------IKTLLMEESSFSEKDGK 182 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTT-------CSEEECTTCEEECCCSH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCC-------CCEEECccccccCcchh
Confidence 35678888888777654333332222444 88888877652 223333345556 888888888765432
Q ss_pred ---ccccCCCCccEEeccCCcCC----CcCchHhhhCCCCccEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCC---C
Q 003421 146 ---GDIELLKKLTVLEISGANSV----QKIPDKLLDEMTKLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQ---K 214 (821)
Q Consensus 146 ---~~i~~l~~L~~L~l~~~~~~----~~lp~~~~~~l~~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~---~ 214 (821)
.....+++|++|+++++... ..++ .++.++++|++|++++|.+..+|. +..+++|++|+++...... .
T Consensus 183 ~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 183 WLHELAQHNTSLEVLNFYMTEFAKISPKDLE-TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp HHHHHHHHCCCCCEEECTTCCCSSCCHHHHH-HHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred HHHHHHhcCCCccEEEeeccCCCccCHHHHH-HHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHH
Confidence 12356788888888875432 1222 334678888888888888888777 8888888888887532221 1
Q ss_pred C-cccccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcC--CCC-cCCCCCCceEeecCcccccccccccc
Q 003421 215 L-PRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKR--LPK-FGYLKRLSRISIEGCKRFHNFHEIKP 290 (821)
Q Consensus 215 l-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~--l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~ 290 (821)
. ..+..+++|+.|+++++. ...++ ..+..+++|++|++++|.++. +.. +..+++|++|++.++..-..++.+
T Consensus 262 ~~~~l~~~~~L~~L~l~~~~-~~~l~-~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~-- 337 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYMG-PNEMP-ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL-- 337 (592)
T ss_dssp SSSCCCCCTTCCEEEETTCC-TTTGG-GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHH--
T ss_pred HHHHhhccccccccCccccc-hhHHH-HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHH--
Confidence 1 226777888888887753 44455 567778889999998888654 222 577888999888743221122111
Q ss_pred CCCCCCCCCCCCCCCcEEEecC----------CCCCCCCC---CCCCCCCcCEEEecCCCCCCcccChhhhc-CCCCCcE
Q 003421 291 RDSNTKSKPLFPVSLSELHLRD----------CPTLKRLP---HIAGLKNLEVLDVSGTSDSKFAISDESFH-DLDYLRE 356 (821)
Q Consensus 291 ~~~~~~~~~~~~~~L~~L~l~~----------~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~l~~L~~ 356 (821)
...+++|++|++.+ |..+.... ....+++|++|++..+.+.. .....+. .+++|+.
T Consensus 338 --------~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~--~~~~~l~~~~~~L~~ 407 (592)
T 3ogk_B 338 --------AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN--ESLESIGTYLKNLCD 407 (592)
T ss_dssp --------HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH--HHHHHHHHHCCSCCE
T ss_pred --------HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH--HHHHHHHhhCCCCcE
Confidence 23567899999984 54443321 23457899999996666443 3333444 4889999
Q ss_pred EEec----CCCCCCCCC-------ccccccccEEEeecCCC--cCcCC-C-CCCCCCcCEEeccCCCCCCc-CCC-CCCC
Q 003421 357 LNLS----NTKLKSLPP-------LSNLHRLRKLFLKNCEL--LEELP-K-MNGLENLEVLDLSGCSKLVE-FPK-LKDF 419 (821)
Q Consensus 357 L~l~----~~~l~~l~~-------~~~l~~L~~L~l~~~~~--~~~l~-~-~~~l~~L~~L~l~~c~~l~~-i~~-l~~l 419 (821)
|++. .+.+++.|. +..+++|++|++++|.. ..... . ...+++|++|++++|...+. ++. +..+
T Consensus 408 L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 487 (592)
T 3ogk_B 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC 487 (592)
T ss_dssp EEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCC
T ss_pred EEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcC
Confidence 9996 556766432 55688999999987642 22111 1 23478899999998864332 233 5778
Q ss_pred CCCCEEEeeCCCCCccCCCccccCCCCCchhhhhcccceeeecccccCCCC
Q 003421 420 PKLELLDISNTGIKVVPSDISVTSSNFTPDEKHRQASGVFNLVGSLAKGKK 470 (821)
Q Consensus 420 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~ 470 (821)
++|++|++++|.++.. ..+. ....++.++.|++++|.+++..
T Consensus 488 ~~L~~L~l~~n~l~~~-~~~~--------~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 488 PNLQKLEMRGCCFSER-AIAA--------AVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp TTCCEEEEESCCCBHH-HHHH--------HHHHCSSCCEEEEESCBCCTTC
T ss_pred cccCeeeccCCCCcHH-HHHH--------HHHhcCccCeeECcCCcCCHHH
Confidence 9999999999987411 0111 1234567889999999987654
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=7.2e-21 Score=200.56 Aligned_cols=174 Identities=14% Similarity=0.134 Sum_probs=126.4
Q ss_pred ceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCccc-ccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCC
Q 003421 75 EVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLD-LSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKK 153 (821)
Q Consensus 75 ~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~ 153 (821)
.++..+++.+.+. ......+..+++|++|++++|.+..++ ..+..+++ |++|++++|.+.+.++ +..+++
T Consensus 11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-------L~~L~Ls~n~l~~~~~-~~~l~~ 81 (317)
T 3o53_A 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-------LELLNLSSNVLYETLD-LESLST 81 (317)
T ss_dssp EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTT-------CCEEECTTSCCEEEEE-ETTCTT
T ss_pred ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCc-------CCEEECCCCcCCcchh-hhhcCC
Confidence 4555666666664 556667777888999999999886665 56778877 9999998888876444 888888
Q ss_pred ccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCC
Q 003421 154 LTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGA 232 (821)
Q Consensus 154 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~ 232 (821)
|++|++++| .+..++ ..++|++|++++|.++.++. ..+++|++|++++|.+....+. +..+++|+.|++++|
T Consensus 82 L~~L~Ls~n-~l~~l~-----~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 82 LRTLDLNNN-YVQELL-----VGPSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp CCEEECCSS-EEEEEE-----ECTTCCEEECCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS
T ss_pred CCEEECcCC-cccccc-----CCCCcCEEECCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC
Confidence 999998875 444444 34788888988888887664 3367788888888876655443 677888888888887
Q ss_pred CCCCccChhhc-cCCCCCCEeeccCcCCcCCCCc
Q 003421 233 TSLTFFPEQDL-SKHQHLQMIDLSRTQIKRLPKF 265 (821)
Q Consensus 233 ~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~l~~~ 265 (821)
. ++.+++..+ ..+++|++|++++|.++.++..
T Consensus 155 ~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 187 (317)
T 3o53_A 155 E-IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ 187 (317)
T ss_dssp C-CCEEEGGGGGGGTTTCCEEECTTSCCCEEECC
T ss_pred C-CCcccHHHHhhccCcCCEEECCCCcCcccccc
Confidence 6 554443444 4677888888888877766543
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=3.2e-22 Score=223.49 Aligned_cols=346 Identities=19% Similarity=0.162 Sum_probs=238.6
Q ss_pred CCCceeEEEecCCCccccc---cHHHHhcCcCCcEEEeecCCCCcc-cccc-cccccCCCCCCCccEEEcCCCCCCCC--
Q 003421 72 KWDEVSTLLIDGDRLRLEV---DEGFLARMKQLHALAIFNSGFKSL-DLSS-KTEKKSEPEKLPMKLLVLRSCNLLNG-- 144 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~l-~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~-- 144 (821)
.++++++|++++|.+.... ....+..+++|++|++++|.++.. +..+ ..+.. ...+|++|++++|.+...
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~---~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT---PSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS---TTCCCCEEECTTSCCBGGGH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh---CCCceeEEEccCCCCCHHHH
Confidence 4568999999999986421 234567789999999999998432 2222 22330 001299999999988742
Q ss_pred ---cccccCCCCccEEeccCCcCCCcCch----HhhhCCCCccEEEecCCCCCc-----CcC-cCCCCcccEEEccCCCC
Q 003421 145 ---IGDIELLKKLTVLEISGANSVQKIPD----KLLDEMTKLQSLNLSGCQMKF-----LPS-LSKLFNLRFLILRDCSS 211 (821)
Q Consensus 145 ---~~~i~~l~~L~~L~l~~~~~~~~lp~----~~~~~l~~L~~L~l~~~~i~~-----lp~-l~~l~~L~~L~l~~~~~ 211 (821)
+..+..+++|++|++++|......+. .++...++|++|++++|.++. ++. +..+++|++|++++|.+
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 35678899999999998653222222 222346689999999999886 345 77789999999999875
Q ss_pred CCCCcc-c-----ccCCcccEEeecCCCCCCc-----cChhhccCCCCCCEeeccCcCCcCC------CC-cCCCCCCce
Q 003421 212 LQKLPR-I-----NELVRLEIIDLSGATSLTF-----FPEQDLSKHQHLQMIDLSRTQIKRL------PK-FGYLKRLSR 273 (821)
Q Consensus 212 ~~~l~~-l-----~~l~~L~~L~l~~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~l~~l------~~-~~~l~~L~~ 273 (821)
....+. + ...++|+.|++++|. ++. ++ ..+..+++|++|++++|.++.. +. ...+++|++
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~ 260 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLC-GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHH-HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHH-HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceE
Confidence 442222 2 236699999999987 554 23 5677889999999999988753 22 346889999
Q ss_pred EeecCcccccc-----ccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC-----C-CCCCCCcCEEEecCCCCCCcc
Q 003421 274 ISIEGCKRFHN-----FHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP-----H-IAGLKNLEVLDVSGTSDSKFA 342 (821)
Q Consensus 274 L~l~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----~-l~~~~~L~~L~l~~~~~~~~~ 342 (821)
|++++|. ++. ++.. +..+++|++|++++|......+ . ....++|+.|++++|.+...+
T Consensus 261 L~L~~n~-l~~~~~~~l~~~----------l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 261 LWIWECG-ITAKGCGDLCRV----------LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp EECTTSC-CCHHHHHHHHHH----------HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred EECcCCC-CCHHHHHHHHHH----------HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence 9999884 222 1111 2346789999999986432211 1 123469999999999865411
Q ss_pred --cChhhhcCCCCCcEEEecCCCCCCCCC--cc-----ccccccEEEeecCCCcC----cCCC-CCCCCCcCEEeccCCC
Q 003421 343 --ISDESFHDLDYLRELNLSNTKLKSLPP--LS-----NLHRLRKLFLKNCELLE----ELPK-MNGLENLEVLDLSGCS 408 (821)
Q Consensus 343 --~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~-----~l~~L~~L~l~~~~~~~----~l~~-~~~l~~L~~L~l~~c~ 408 (821)
.++..+..+++|+.|++++|.+++... +. ..++|++|++++|.+.. .++. +..+++|++|++++|+
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 245667788999999999998874322 22 26799999999998654 4443 6678999999999986
Q ss_pred CCCcCCC------CCCCCCCCEEEeeCCCCC
Q 003421 409 KLVEFPK------LKDFPKLELLDISNTGIK 433 (821)
Q Consensus 409 ~l~~i~~------l~~l~~L~~L~l~~~~~~ 433 (821)
....... -.....|+.|.+.++...
T Consensus 410 i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 410 LGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 4433111 123457888888877653
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=1.2e-19 Score=188.43 Aligned_cols=217 Identities=21% Similarity=0.226 Sum_probs=143.8
Q ss_pred cEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcC-cC-cCCCCcccEEEccCC
Q 003421 132 KLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFL-PS-LSKLFNLRFLILRDC 209 (821)
Q Consensus 132 ~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~l-p~-l~~l~~L~~L~l~~~ 209 (821)
++++.+++.+...+..+ .++|++|++++| .+..++...|.++++|++|++++|.++.+ |. +..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56777777766655433 467888888874 55666666567788888888888887776 44 777888888888877
Q ss_pred CCCCCC-cc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCC--cCCCCCCceEeecCccccccc
Q 003421 210 SSLQKL-PR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK--FGYLKRLSRISIEGCKRFHNF 285 (821)
Q Consensus 210 ~~~~~l-~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~~ 285 (821)
.....+ +. +..+++|++|++++|. ++.+++..+..+++|++|++++|.++.++. +..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------ 151 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------------ 151 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------
T ss_pred CCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc------------------
Confidence 633333 33 6777777777777766 555544667777777777777777766543 333
Q ss_pred cccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCC
Q 003421 286 HEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKL 364 (821)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 364 (821)
+++|++|++++|......+ .+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+
T Consensus 152 ----------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 152 ----------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH--VHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp ----------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCC
T ss_pred ----------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc--cCHhHccCcccccEeeCCCCcC
Confidence 3444555555443322222 36667778888887777544 5566677777777777777777
Q ss_pred CCCCC--ccccccccEEEeecCCCcC
Q 003421 365 KSLPP--LSNLHRLRKLFLKNCELLE 388 (821)
Q Consensus 365 ~~l~~--~~~l~~L~~L~l~~~~~~~ 388 (821)
++++. +..+++|+.|++++|++..
T Consensus 214 ~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 214 SALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp SCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CcCCHHHcccCcccCEEeccCCCccC
Confidence 77665 6677777777777776543
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=6.6e-21 Score=200.34 Aligned_cols=124 Identities=14% Similarity=0.096 Sum_probs=67.0
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCC--ccccccc-------ccccCCCCCCCccEEEcCCCCCCCC
Q 003421 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFK--SLDLSSK-------TEKKSEPEKLPMKLLVLRSCNLLNG 144 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~l~~~~~-------~l~~~~~~~~~L~~L~l~~~~~~~~ 144 (821)
++++.|++++|.+ .++..+... |++|++++|.+. .+|..+. .+.+ |++|++++|.+.+.
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~-------L~~L~L~~n~l~~~ 110 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISG-------LQELTLENLEVTGT 110 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC-------CCEEEEEEEBCBSC
T ss_pred CCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCC-------ccEEEccCCcccch
Confidence 3566666666666 555544432 666666666652 2343333 3444 66666666666543
Q ss_pred c-ccc--cCCCCccEEeccCCcCCCcCchHhhhCC-----CCccEEEecCCCCCcCc-C-cCCCCcccEEEccCCCC
Q 003421 145 I-GDI--ELLKKLTVLEISGANSVQKIPDKLLDEM-----TKLQSLNLSGCQMKFLP-S-LSKLFNLRFLILRDCSS 211 (821)
Q Consensus 145 ~-~~i--~~l~~L~~L~l~~~~~~~~lp~~~~~~l-----~~L~~L~l~~~~i~~lp-~-l~~l~~L~~L~l~~~~~ 211 (821)
. ..+ ..+++|++|++++|. +..+|..+ +.+ ++|++|++++|.+..++ . ++.+++|++|++++|.+
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVS-WATRDAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCB-CSSSSSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred hHHHHHHhcCCCccEEEccCCC-CcchhHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence 3 222 556666666666543 33334332 444 56666666666666554 2 55666666666665554
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=1e-21 Score=226.74 Aligned_cols=370 Identities=13% Similarity=0.067 Sum_probs=236.4
Q ss_pred CCCceeEEEecCCCccc--------------cccHHHHhcCcCCcEEEeecCCCCc-cccccccc--ccCCCCCCCccEE
Q 003421 72 KWDEVSTLLIDGDRLRL--------------EVDEGFLARMKQLHALAIFNSGFKS-LDLSSKTE--KKSEPEKLPMKLL 134 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~--------------~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l--~~~~~~~~~L~~L 134 (821)
.++++++|+++++.... .....++..+++|++|+++++.++. .+..+... .+ |++|
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~-------L~~L 143 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADD-------LETL 143 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGG-------CCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcccc-------CcEE
Confidence 35679999997753210 1123345578999999999987732 23344443 44 9999
Q ss_pred EcCCCCCCCC--c-ccccCCCCccEEeccCCcCCCcC---chHhhhCCCCccEEEecCCCCCc-----CcC-cCCCCccc
Q 003421 135 VLRSCNLLNG--I-GDIELLKKLTVLEISGANSVQKI---PDKLLDEMTKLQSLNLSGCQMKF-----LPS-LSKLFNLR 202 (821)
Q Consensus 135 ~l~~~~~~~~--~-~~i~~l~~L~~L~l~~~~~~~~l---p~~~~~~l~~L~~L~l~~~~i~~-----lp~-l~~l~~L~ 202 (821)
++++|..... . ..+.++++|++|++++|.....- -..++..+++|++|++++|.++. ++. +..+++|+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 9988863211 1 12347899999999987533221 12345778999999999998863 444 67889999
Q ss_pred EEEccCCCCCCCCcc-cccCCcccEEeecCCCCC---CccChhhccCCCCCCEeeccCcCCcCCCC-cCCCCCCceEeec
Q 003421 203 FLILRDCSSLQKLPR-INELVRLEIIDLSGATSL---TFFPEQDLSKHQHLQMIDLSRTQIKRLPK-FGYLKRLSRISIE 277 (821)
Q Consensus 203 ~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~---~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l~ 277 (821)
+|++++|.... ++. +..+++|+.|+++..... .... ..+..+++|+.|+++++....++. +..+++|++|+++
T Consensus 224 ~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 224 SVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKY-MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp EEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSS-SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEET
T ss_pred EEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHH-HHhhccccccccCccccchhHHHHHHhhcCCCcEEecC
Confidence 99999986554 444 688899999999754322 1222 457778899999998876666665 5678899999998
Q ss_pred CccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC-CCCCCCCcCEEEecC----------CCCCCcccChh
Q 003421 278 GCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP-HIAGLKNLEVLDVSG----------TSDSKFAISDE 346 (821)
Q Consensus 278 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~----------~~~~~~~~~~~ 346 (821)
+|. +...... .....+++|++|++.++.....++ ....+++|+.|++++ +..........
T Consensus 302 ~~~-l~~~~~~--------~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~ 372 (592)
T 3ogk_B 302 YAL-LETEDHC--------TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372 (592)
T ss_dssp TCC-CCHHHHH--------HHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred CCc-CCHHHHH--------HHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence 876 3211100 003567889999988432222222 235678899999984 43333122334
Q ss_pred hhcCCCCCcEEEecCCCCCCCC--Ccc-ccccccEEEeecC---CCcCcCC------C-CCCCCCcCEEeccCCCC-CCc
Q 003421 347 SFHDLDYLRELNLSNTKLKSLP--PLS-NLHRLRKLFLKNC---ELLEELP------K-MNGLENLEVLDLSGCSK-LVE 412 (821)
Q Consensus 347 ~~~~l~~L~~L~l~~~~l~~l~--~~~-~l~~L~~L~l~~~---~~~~~l~------~-~~~l~~L~~L~l~~c~~-l~~ 412 (821)
....+++|+.|++..+.+++-. .+. .+++|+.|++.++ ...+..| . +..+++|++|++++|.. +..
T Consensus 373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 4556889999999777776321 133 4888999999743 2333322 1 34588999999987652 221
Q ss_pred -CCC--CCCCCCCCEEEeeCCCCCccCCCccccCCCCCchhhhhcccceeeecccccCC
Q 003421 413 -FPK--LKDFPKLELLDISNTGIKVVPSDISVTSSNFTPDEKHRQASGVFNLVGSLAKG 468 (821)
Q Consensus 413 -i~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~n~~~~ 468 (821)
... ...+++|++|++++|+++.. .++. .+..++.++.|++++|.+.+
T Consensus 453 ~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~--------~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 453 LGLSYIGQYSPNVRWMLLGYVGESDE-GLME--------FSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp HHHHHHHHSCTTCCEEEECSCCSSHH-HHHH--------HHTCCTTCCEEEEESCCCBH
T ss_pred HHHHHHHHhCccceEeeccCCCCCHH-HHHH--------HHhcCcccCeeeccCCCCcH
Confidence 111 23478899999998887521 0111 11233567888888887654
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=2.1e-19 Score=189.36 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=74.5
Q ss_pred CCCCCCCcCEEEecCCCCCCcccChhhh-cCCCCCcEEEecCCCCCCCCCccccccccEEEeecCCCcCcCCCCCCCCCc
Q 003421 321 HIAGLKNLEVLDVSGTSDSKFAISDESF-HDLDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPKMNGLENL 399 (821)
Q Consensus 321 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L 399 (821)
.+..+++|+.|++++|.+.. ..+..+ ..+++|+.|++++|.++.++....+++|+.|++++|++....+.+..+++|
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L 216 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDT--VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGV 216 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCE--EEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTC
T ss_pred hhhccCCCCEEECCCCCCCc--ccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcc
Confidence 34455667777777766544 233333 456778888888887777766555778888888887755444446677888
Q ss_pred CEEeccCCCCCCcCCC-CCCCCCCCEEEeeCCCCC
Q 003421 400 EVLDLSGCSKLVEFPK-LKDFPKLELLDISNTGIK 433 (821)
Q Consensus 400 ~~L~l~~c~~l~~i~~-l~~l~~L~~L~l~~~~~~ 433 (821)
++|++++|. +..+|. +..+++|+.|++++|++.
T Consensus 217 ~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 217 TWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCB
T ss_pred cEEECcCCc-ccchhhHhhcCCCCCEEEccCCCcc
Confidence 888888764 345665 777788888888887775
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=1.5e-19 Score=208.88 Aligned_cols=305 Identities=15% Similarity=0.124 Sum_probs=168.6
Q ss_pred EEEecCCCccccccHHHHhcCcCCcEEEeecCCC-Ccc---ccc------------ccccccCCCCCCCccEEEcCCCCC
Q 003421 78 TLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGF-KSL---DLS------------SKTEKKSEPEKLPMKLLVLRSCNL 141 (821)
Q Consensus 78 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l---~~~------------~~~l~~~~~~~~~L~~L~l~~~~~ 141 (821)
.+++.... ...+...+.++++|++|+++++.. ..+ |.. ...+++ |++|++++|.+
T Consensus 47 ~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~-------L~~L~L~~~~~ 117 (594)
T 2p1m_B 47 KVFIGNCY--AVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW-------LEEIRLKRMVV 117 (594)
T ss_dssp EEEESSTT--SSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT-------CCEEEEESCBC
T ss_pred EEeecccc--ccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCC-------CCeEEeeCcEE
Confidence 44554433 234556778889999999988763 111 111 123444 88899888876
Q ss_pred CCCc-cccc-CCCCccEEeccCCcCCCc-CchHhhhCCCCccEEEecCCCCCc-----CcC-cCCCCcccEEEccCCCC-
Q 003421 142 LNGI-GDIE-LLKKLTVLEISGANSVQK-IPDKLLDEMTKLQSLNLSGCQMKF-----LPS-LSKLFNLRFLILRDCSS- 211 (821)
Q Consensus 142 ~~~~-~~i~-~l~~L~~L~l~~~~~~~~-lp~~~~~~l~~L~~L~l~~~~i~~-----lp~-l~~l~~L~~L~l~~~~~- 211 (821)
.+.. ..+. .+++|++|++++|..++. ....++.++++|++|++++|.+++ ++. ...+++|++|++++|..
T Consensus 118 ~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 197 (594)
T 2p1m_B 118 TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE 197 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSC
T ss_pred cHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCc
Confidence 5433 3343 688899999988754443 123444678899999998887654 333 44777888888888751
Q ss_pred C--CCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcC-------CcCCC-CcCCCCCCceEeecCcc
Q 003421 212 L--QKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQ-------IKRLP-KFGYLKRLSRISIEGCK 280 (821)
Q Consensus 212 ~--~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------l~~l~-~~~~l~~L~~L~l~~~~ 280 (821)
. ..++. +..+++|+.|++++|..++.++ ..+..+++|++|++..+. +..++ .+..+++|+.+.
T Consensus 198 ~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls----- 271 (594)
T 2p1m_B 198 VSFSALERLVTRCPNLKSLKLNRAVPLEKLA-TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS----- 271 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCTTSCHHHHH-HHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEE-----
T ss_pred CCHHHHHHHHHhCCCCcEEecCCCCcHHHHH-HHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccccc-----
Confidence 0 01222 2557888888888875555554 567778888888865443 22222 234444444441
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEe
Q 003421 281 RFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNL 359 (821)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l 359 (821)
.+.+. ....++ .+..+++|+.|++++|.... ......+..+++|+.|++
T Consensus 272 ----------------------------~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~-~~l~~~~~~~~~L~~L~l 321 (594)
T 2p1m_B 272 ----------------------------GFWDA-VPAYLPAVYSVCSRLTTLNLSYATVQS-YDLVKLLCQCPKLQRLWV 321 (594)
T ss_dssp ----------------------------CCBTC-CGGGGGGGHHHHTTCCEEECTTCCCCH-HHHHHHHTTCTTCCEEEE
T ss_pred ----------------------------CCccc-chhhHHHHHHhhCCCCEEEccCCCCCH-HHHHHHHhcCCCcCEEeC
Confidence 11110 011111 12234556666666655222 223333455666666666
Q ss_pred cCCCCC--CCCC-ccccccccEEEeecC--------CCcCcC--CC-CCCCCCcCEEeccCCCCCCcCCC-C-CCCCCCC
Q 003421 360 SNTKLK--SLPP-LSNLHRLRKLFLKNC--------ELLEEL--PK-MNGLENLEVLDLSGCSKLVEFPK-L-KDFPKLE 423 (821)
Q Consensus 360 ~~~~l~--~l~~-~~~l~~L~~L~l~~~--------~~~~~l--~~-~~~l~~L~~L~l~~c~~l~~i~~-l-~~l~~L~ 423 (821)
.+| +. .++. ...+++|++|++.+| ...+.. .. ...+++|++|.+..+........ + ..+++|+
T Consensus 322 ~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~ 400 (594)
T 2p1m_B 322 LDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMT 400 (594)
T ss_dssp EGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCC
T ss_pred cCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcc
Confidence 655 22 1222 234566677766432 111110 01 12367777776654432222111 2 2477888
Q ss_pred EEEee
Q 003421 424 LLDIS 428 (821)
Q Consensus 424 ~L~l~ 428 (821)
.|+++
T Consensus 401 ~L~L~ 405 (594)
T 2p1m_B 401 RFRLC 405 (594)
T ss_dssp EEEEE
T ss_pred eeEee
Confidence 88887
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=1.3e-17 Score=171.26 Aligned_cols=191 Identities=23% Similarity=0.324 Sum_probs=97.4
Q ss_pred eeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccc-cccccccCCCCCCCccEEEcCCCCCCCCcc-cccCCCC
Q 003421 76 VSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDL-SSKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIELLKK 153 (821)
Q Consensus 76 l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~~l~~ 153 (821)
.+.++++++.+. .+|..+ .+++++|++++|.+..++. .+..+++ |++|++++|.+...++ .+..+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~-------L~~L~l~~n~l~~i~~~~~~~l~~ 86 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTK-------LRLLYLNDNKLQTLPAGIFKELKN 86 (270)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTT-------CCEEECCSSCCSCCCTTTTSSCTT
T ss_pred CCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCC-------CCEEECCCCccCeeChhhhcCCCC
Confidence 345555555554 344321 1345555555555544443 4455555 5555555555554443 2355555
Q ss_pred ccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeec
Q 003421 154 LTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLS 230 (821)
Q Consensus 154 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~ 230 (821)
|++|++++| .+..+|..+|..+++|++|++++|.++.++. +..+++|++|++++|.+....+. +..+++|+.|+++
T Consensus 87 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 87 LETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 555555553 3444554444555555555555555555543 55555555555555544332222 4555555555555
Q ss_pred CCCCCCccChhhccCCCCCCEeeccCcCCcCCCC--cCCCCCCceEeecCc
Q 003421 231 GATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK--FGYLKRLSRISIEGC 279 (821)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~ 279 (821)
+|. ++.+++..+..+++|++|++++|.++.++. +..+++|+.|++++|
T Consensus 166 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 166 NNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp SSC-CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCc-CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 554 444444445555555555555555555443 344444444444443
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=1.2e-18 Score=183.03 Aligned_cols=220 Identities=21% Similarity=0.183 Sum_probs=137.3
Q ss_pred eeEEEecCCCcc-ccccHHHH------hcCcCCcEEEeecCCCC-cccccc--cccccCCCCCCCccEEEcCCCCCCCCc
Q 003421 76 VSTLLIDGDRLR-LEVDEGFL------ARMKQLHALAIFNSGFK-SLDLSS--KTEKKSEPEKLPMKLLVLRSCNLLNGI 145 (821)
Q Consensus 76 l~~L~l~~n~~~-~~~~~~~~------~~l~~L~~L~l~~~~~~-~l~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~ 145 (821)
++.|++++|.+. ..++...+ .++++|++|++++|.+. .+|..+ ..+++ |++|++++|.+.+.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~-------L~~L~Ls~N~l~~~~ 137 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD-------LNILNLRNVSWATRD 137 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCC-------CSEEEEESCBCSSSS
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCC-------ccEEEccCCCCcchh
Confidence 667777777663 33443321 25777777777777774 566655 66666 777777777777665
Q ss_pred ccccCC-----CCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCc---CcC-c--CCCCcccEEEccCCCCCC-
Q 003421 146 GDIELL-----KKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKF---LPS-L--SKLFNLRFLILRDCSSLQ- 213 (821)
Q Consensus 146 ~~i~~l-----~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~---lp~-l--~~l~~L~~L~l~~~~~~~- 213 (821)
..++.+ ++|++|++++| .+..++...++++++|++|++++|.+.. +|. + +.+++|++|++++|.+..
T Consensus 138 ~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 216 (312)
T 1wwl_A 138 AWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216 (312)
T ss_dssp SHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH
T ss_pred HHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch
Confidence 445555 77777777774 4455554445777777777777777553 232 3 677777777777776542
Q ss_pred -CCcc--cccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCcccccccccccc
Q 003421 214 -KLPR--INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKP 290 (821)
Q Consensus 214 -~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 290 (821)
.++. +..+++|+.|++++|...+..+...+..+++|++|++++|.++.+|..-. ++|+.|++++|.. +.++.
T Consensus 217 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l-~~~p~--- 291 (312)
T 1wwl_A 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRL-DRNPS--- 291 (312)
T ss_dssp HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCC-CSCCC---
T ss_pred HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCC-CCChh---
Confidence 2221 35667777777777763332322445566777777777777777665222 6777777777642 22211
Q ss_pred CCCCCCCCCCCCCCCcEEEecCCCCC
Q 003421 291 RDSNTKSKPLFPVSLSELHLRDCPTL 316 (821)
Q Consensus 291 ~~~~~~~~~~~~~~L~~L~l~~~~~~ 316 (821)
+..+++|++|++++|...
T Consensus 292 --------~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 292 --------PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp --------TTTSCEEEEEECTTCTTT
T ss_pred --------HhhCCCCCEEeccCCCCC
Confidence 445677778888777543
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=4.2e-17 Score=167.38 Aligned_cols=170 Identities=22% Similarity=0.337 Sum_probs=142.1
Q ss_pred cCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcc-cccCCCCccEEeccCCcCCCcCchHhhhCCC
Q 003421 99 KQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIELLKKLTVLEISGANSVQKIPDKLLDEMT 177 (821)
Q Consensus 99 ~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~ 177 (821)
...++++++++.++.+|..+. .. +++|++++|.+...++ .+.++++|++|++++| .+..+|..+|..++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~-------l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~ 85 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--AD-------TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELK 85 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TT-------CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCT
T ss_pred CCCCEEEccCCCCCccCCCCC--CC-------CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCC
Confidence 457899999999999997665 45 9999999999987764 6899999999999984 67788888889999
Q ss_pred CccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeec
Q 003421 178 KLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDL 254 (821)
Q Consensus 178 ~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 254 (821)
+|++|++++|.++.+|. +..+++|++|++++|.+....+. +..+++|++|++++|. ++.++...+..+++|++|++
T Consensus 86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEe
Confidence 99999999999999886 78999999999999887665555 6889999999999987 77777667888999999999
Q ss_pred cCcCCcCCCC--cCCCCCCceEeecCc
Q 003421 255 SRTQIKRLPK--FGYLKRLSRISIEGC 279 (821)
Q Consensus 255 ~~~~l~~l~~--~~~l~~L~~L~l~~~ 279 (821)
++|.++.++. +..+++|+.|++++|
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 165 YNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCcCcEeChhHhccCCCcCEEECCCC
Confidence 9998888764 555566666665554
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.3e-18 Score=193.96 Aligned_cols=231 Identities=16% Similarity=0.156 Sum_probs=138.9
Q ss_pred cCCcEEEeecCCCCccc-ccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCC
Q 003421 99 KQLHALAIFNSGFKSLD-LSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMT 177 (821)
Q Consensus 99 ~~L~~L~l~~~~~~~l~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~ 177 (821)
++|++|++++|.+..++ ..+..+++ |++|++++|.+.+.++ ++.+++|++|++++| .+..+|. .+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~-------L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~-----~~ 99 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTK-------LELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV-----GP 99 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTT-------CCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE-----CT
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCC-------CCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC-----CC
Confidence 37777777777775554 46677776 7777777777765444 777777777777774 3444442 36
Q ss_pred CccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhcc-CCCCCCEeecc
Q 003421 178 KLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLS-KHQHLQMIDLS 255 (821)
Q Consensus 178 ~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~ 255 (821)
+|++|++++|.++.++. ..+++|++|++++|.+....|. +..+++|+.|++++|. ++..++..+. .+++|++|+++
T Consensus 100 ~L~~L~L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 100 SIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp TCCEEECCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECT
T ss_pred CcCEEECcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecC
Confidence 77777777777776653 3356777777777766555454 5667777777777765 4333334443 56677777777
Q ss_pred CcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcCEEEecC
Q 003421 256 RTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLPHIAGLKNLEVLDVSG 335 (821)
Q Consensus 256 ~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~ 335 (821)
+|.++.++.... +++|+.|++++
T Consensus 178 ~N~l~~~~~~~~---------------------------------------------------------l~~L~~L~Ls~ 200 (487)
T 3oja_A 178 YNFIYDVKGQVV---------------------------------------------------------FAKLKTLDLSS 200 (487)
T ss_dssp TSCCCEEECCCC---------------------------------------------------------CTTCCEEECCS
T ss_pred CCcccccccccc---------------------------------------------------------CCCCCEEECCC
Confidence 776665543222 33344444444
Q ss_pred CCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC-ccccccccEEEeecCCCc-CcCCC-CCCCCCcCEEecc
Q 003421 336 TSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP-LSNLHRLRKLFLKNCELL-EELPK-MNGLENLEVLDLS 405 (821)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l~~~~~~-~~l~~-~~~l~~L~~L~l~ 405 (821)
|.+.. ++..+..+++|+.|++++|.++++|. +..+++|+.|++++|++. ..+|. +..++.|+.+++.
T Consensus 201 N~l~~---~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 201 NKLAF---MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp SCCCE---ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCC---CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 44322 22224555666666666666666665 556666666666666554 22222 4455566665554
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=1e-20 Score=218.61 Aligned_cols=364 Identities=16% Similarity=0.155 Sum_probs=215.5
Q ss_pred CCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecC-CCCc--ccccccccccCCCCCCCccEEEcCCCCCCCCc---
Q 003421 72 KWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNS-GFKS--LDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI--- 145 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~--l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--- 145 (821)
.+++|++|+++++.+.+.....+...+++|++|+++++ .++. ++.....+++ |++|++++|.+.+..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~-------L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRN-------LKELDLRESDVDDVSGHW 175 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTT-------CCEEECTTCEEECCCGGG
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCC-------CCEEeCcCCccCCcchHH
Confidence 35688899999888775555454446889999999888 4433 4555556777 999999888765432
Q ss_pred -c-cccCCCCccEEeccCCcCCCcCc----hHhhhCCCCccEEEecCC-CCCcCcC-cCCCCcccEEEccCCCCC-----
Q 003421 146 -G-DIELLKKLTVLEISGANSVQKIP----DKLLDEMTKLQSLNLSGC-QMKFLPS-LSKLFNLRFLILRDCSSL----- 212 (821)
Q Consensus 146 -~-~i~~l~~L~~L~l~~~~~~~~lp----~~~~~~l~~L~~L~l~~~-~i~~lp~-l~~l~~L~~L~l~~~~~~----- 212 (821)
. ....+++|++|++++|. ..+. ..++.++++|++|++++| .+..+|. +..+++|++|+++.+...
T Consensus 176 l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred HHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhh
Confidence 1 22367789999998764 2232 223356789999999888 4555666 778888888887665321
Q ss_pred -CCCc-ccccCCcccEE-eecCCCCCCccChhhccCCCCCCEeeccCcCCcC--CCC-cCCCCCCceEeecCcccccccc
Q 003421 213 -QKLP-RINELVRLEII-DLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKR--LPK-FGYLKRLSRISIEGCKRFHNFH 286 (821)
Q Consensus 213 -~~l~-~l~~l~~L~~L-~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~--l~~-~~~l~~L~~L~l~~~~~l~~~~ 286 (821)
..++ .+.++++|+.+ .+.... ...++ ..+..+++|++|++++|.++. +.. +..+++|++|++.+|..-..+.
T Consensus 254 ~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~-~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~ 331 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLSGFWDAV-PAYLP-AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLE 331 (594)
T ss_dssp HHHHHHHHHTCTTCCEEECCBTCC-GGGGG-GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHH
T ss_pred HHHHHHHHhcCCCcccccCCcccc-hhhHH-HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHH
Confidence 0111 25667777777 333321 12232 334457788888888877653 222 4577788888887762211111
Q ss_pred ccccCCCCCCCCCCCCCCCcEEEecCC--------CCCCCCC--CC-CCCCCcCEEEecCCCCCCcccChhhhcCCCCCc
Q 003421 287 EIKPRDSNTKSKPLFPVSLSELHLRDC--------PTLKRLP--HI-AGLKNLEVLDVSGTSDSKFAISDESFHDLDYLR 355 (821)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~L~~L~l~~~--------~~~~~~~--~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~ 355 (821)
.+ ...+++|++|++.++ ..+.... .+ ..+++|+.|.+..+.... .........+++|+
T Consensus 332 ~l----------~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~-~~~~~l~~~~~~L~ 400 (594)
T 2p1m_B 332 VL----------ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN-AALITIARNRPNMT 400 (594)
T ss_dssp HH----------HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH-HHHHHHHHHCTTCC
T ss_pred HH----------HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH-HHHHHHHhhCCCcc
Confidence 11 223667888888543 1211111 11 236778888766655433 22222223577888
Q ss_pred EEEec--C----CCCCCCCC-------ccccccccEEEeecCCCcCcC-CCCC-CCCCcCEEeccCCCCCCcCCC-C-CC
Q 003421 356 ELNLS--N----TKLKSLPP-------LSNLHRLRKLFLKNCELLEEL-PKMN-GLENLEVLDLSGCSKLVEFPK-L-KD 418 (821)
Q Consensus 356 ~L~l~--~----~~l~~l~~-------~~~l~~L~~L~l~~~~~~~~l-~~~~-~l~~L~~L~l~~c~~l~~i~~-l-~~ 418 (821)
.|++. + +.++..|. +..+++|+.|++++ .+.... +.+. .+++|+.|++++|........ + ..
T Consensus 401 ~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 479 (594)
T 2p1m_B 401 RFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSG 479 (594)
T ss_dssp EEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHH
T ss_pred eeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhc
Confidence 88887 3 35554432 45667888888866 222211 1122 267788888887763222221 2 45
Q ss_pred CCCCCEEEeeCCCCCccCCCccccCCCCCchhhhhcccceeeecccccC
Q 003421 419 FPKLELLDISNTGIKVVPSDISVTSSNFTPDEKHRQASGVFNLVGSLAK 467 (821)
Q Consensus 419 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~l~~n~~~ 467 (821)
+++|++|++++|.++.. .... ....++.++.+++++|..+
T Consensus 480 ~~~L~~L~L~~n~~~~~-~~~~--------~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 480 CDSLRKLEIRDCPFGDK-ALLA--------NASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CTTCCEEEEESCSCCHH-HHHH--------TGGGGGGSSEEEEESSCCB
T ss_pred CCCcCEEECcCCCCcHH-HHHH--------HHHhCCCCCEEeeeCCCCC
Confidence 78888888888876311 0000 1122457778888887663
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=1.1e-17 Score=171.95 Aligned_cols=173 Identities=27% Similarity=0.387 Sum_probs=106.4
Q ss_pred hcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhC
Q 003421 96 ARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDE 175 (821)
Q Consensus 96 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~ 175 (821)
..+++|+.|+++++.+..++. +..+++ |++|++++|.+.+ ++.+..+++|++|++++| .+..++...|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~-l~~l~~-------L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~ 107 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQG-IQYLPN-------VRYLALGGNKLHD-ISALKELTNLTYLILTGN-QLQSLPNGVFDK 107 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTT-GGGCTT-------CCEEECTTSCCCC-CGGGTTCTTCCEEECTTS-CCCCCCTTTTTT
T ss_pred ccccceeeeeeCCCCcccccc-cccCCC-------CcEEECCCCCCCC-chhhcCCCCCCEEECCCC-ccCccChhHhcC
Confidence 345666666666666655542 555555 6666666666654 345666666666666664 445555555566
Q ss_pred CCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEe
Q 003421 176 MTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMI 252 (821)
Q Consensus 176 l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 252 (821)
+++|++|++++|.++.++. ++.+++|++|++++|.+....+. +..+++|+.|++++|. ++.+++..++.+++|++|
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEE
Confidence 6666677766666666554 56666666666666655433333 4666666677766665 555554556666777777
Q ss_pred eccCcCCcCCCC--cCCCCCCceEeecCc
Q 003421 253 DLSRTQIKRLPK--FGYLKRLSRISIEGC 279 (821)
Q Consensus 253 ~l~~~~l~~l~~--~~~l~~L~~L~l~~~ 279 (821)
++++|.++.++. +..+++|+.|++++|
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 777776666554 455666666666555
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=1.1e-17 Score=175.09 Aligned_cols=190 Identities=19% Similarity=0.272 Sum_probs=129.9
Q ss_pred CCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCC
Q 003421 72 KWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELL 151 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l 151 (821)
.+++++.|+++++.+. .++ .+..+++|++|++++|.+..++. +..+++ |++|++++|.+.+. +.+..+
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~--~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~-------L~~L~L~~n~l~~~-~~~~~l 106 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITDLAP-LKNLTK-------ITELELSGNPLKNV-SAIAGL 106 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCCS-------CCEEECCSCCCSCC-GGGTTC
T ss_pred HcCCcCEEEeeCCCcc-Cch--hhhccCCCCEEEccCCcCCCChh-HccCCC-------CCEEEccCCcCCCc-hhhcCC
Confidence 3557777777777765 444 25667777777777777776666 666666 77777777776653 456777
Q ss_pred CCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcccEEeecC
Q 003421 152 KKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSG 231 (821)
Q Consensus 152 ~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~ 231 (821)
++|++|++++| .+..++. +..+++|++|++++|.++.++.+..+++|++|++++|.+.. ++.+..+++|+.|++++
T Consensus 107 ~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 107 QSIKTLDLTST-QITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD-LTPLANLSKLTTLKADD 182 (308)
T ss_dssp TTCCEEECTTS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCS
T ss_pred CCCCEEECCCC-CCCCchh--hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC-ChhhcCCCCCCEEECCC
Confidence 77777777774 3455554 46777777777777777777667777777777777775443 44467777777777777
Q ss_pred CCCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCcc
Q 003421 232 ATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCK 280 (821)
Q Consensus 232 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~ 280 (821)
|. ++.+++ +..+++|++|++++|.++.++.+..+++|+.|++++|.
T Consensus 183 n~-l~~~~~--l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 183 NK-ISDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp SC-CCCCGG--GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred Cc-cCcChh--hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 65 555542 66677777777777777776666666667776666654
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=7.3e-18 Score=188.01 Aligned_cols=211 Identities=17% Similarity=0.195 Sum_probs=122.7
Q ss_pred CccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCCCCCccChhhccCCCCCCEeecc
Q 003421 178 KLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLS 255 (821)
Q Consensus 178 ~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 255 (821)
+|++|++++|.++.++. ++.+++|++|++++|.+....| +..+++|+.|++++|. ++.++ ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC-----CCCCcCEEECc
Confidence 45555555555444432 4455555555555444332222 4444445555554443 33332 12556666666
Q ss_pred CcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC-CCCCCCCcCEEEec
Q 003421 256 RTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP-HIAGLKNLEVLDVS 334 (821)
Q Consensus 256 ~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~ 334 (821)
+|.++.++. . .+++|+.|++++|......+ .++.+++|+.|+++
T Consensus 108 ~N~l~~~~~-~----------------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 108 NNNISRVSC-S----------------------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp SSCCCCEEE-C----------------------------------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT
T ss_pred CCcCCCCCc-c----------------------------------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC
Confidence 665554432 1 12344455555544433333 45556677777777
Q ss_pred CCCCCCcccChhhhc-CCCCCcEEEecCCCCCCCCCccccccccEEEeecCCCcCcCCCCCCCCCcCEEeccCCCCCCcC
Q 003421 335 GTSDSKFAISDESFH-DLDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDLSGCSKLVEF 413 (821)
Q Consensus 335 ~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~i 413 (821)
+|.+.. ..+..+. .+++|+.|++++|.+++++....+++|+.|++++|.+.+..+.+..+++|+.|++++|... .+
T Consensus 153 ~N~l~~--~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~l 229 (487)
T 3oja_A 153 LNEIDT--VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LI 229 (487)
T ss_dssp TSCCCE--EEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EE
T ss_pred CCCCCC--cChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-cc
Confidence 776554 3444443 6778888888888777776655677888888888876554455677788888888876543 45
Q ss_pred CC-CCCCCCCCEEEeeCCCCC
Q 003421 414 PK-LKDFPKLELLDISNTGIK 433 (821)
Q Consensus 414 ~~-l~~l~~L~~L~l~~~~~~ 433 (821)
|. +..+++|+.|++++|.+.
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBC
T ss_pred chhhccCCCCCEEEcCCCCCc
Confidence 65 777788888888887764
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=1.5e-17 Score=167.39 Aligned_cols=132 Identities=13% Similarity=0.224 Sum_probs=92.5
Q ss_pred ccEEEcCCCCCCCCcc-cccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecC-CCCCcCcC--cCCCCcccEEEc
Q 003421 131 MKLLVLRSCNLLNGIG-DIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSG-CQMKFLPS--LSKLFNLRFLIL 206 (821)
Q Consensus 131 L~~L~l~~~~~~~~~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~-~~i~~lp~--l~~l~~L~~L~l 206 (821)
|++|++++|.+...++ .+.++++|++|++++|..++.++...|..+++|++|++++ |.++.+|. +..+++|++|++
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l 112 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC
Confidence 7777777777766554 5777788888888775446777766667788888888887 77777764 777778888888
Q ss_pred cCCCCCCCCcccccCCccc---EEeecCCCCCCccChhhccCCCCCC-EeeccCcCCcCCC
Q 003421 207 RDCSSLQKLPRINELVRLE---IIDLSGATSLTFFPEQDLSKHQHLQ-MIDLSRTQIKRLP 263 (821)
Q Consensus 207 ~~~~~~~~l~~l~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~l~~l~ 263 (821)
++|.+.. +|.+..+++|+ .|++++|..++.+++..+..+++|+ +|++++|.++.+|
T Consensus 113 ~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~ 172 (239)
T 2xwt_C 113 FNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172 (239)
T ss_dssp EEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred CCCCCcc-ccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC
Confidence 7776443 55555566665 7777776336666655677777777 7777777666544
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=2.2e-17 Score=170.92 Aligned_cols=191 Identities=20% Similarity=0.178 Sum_probs=95.5
Q ss_pred CCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCccc-ccccccccCCCCCCCccEEEcCCCCCCCCcccccCC
Q 003421 73 WDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLD-LSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELL 151 (821)
Q Consensus 73 ~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l 151 (821)
+++++.++++++.+. .++.++ .+++++|++++|.+..++ ..+..+.+ |++|++++|.+..... .+.+
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~-------L~~L~L~~n~l~~~~~-~~~l 76 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTR-------LTQLNLDRAELTKLQV-DGTL 76 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTT-------CCEEECTTSCCCEEEC-CSCC
T ss_pred cCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCC-------CCEEECCCCccCcccC-CCCC
Confidence 345555555555554 444332 145555555555554432 34445544 5555555555543222 2455
Q ss_pred CCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEe
Q 003421 152 KKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIID 228 (821)
Q Consensus 152 ~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~ 228 (821)
++|++|++++| .+..+|..+ ..+++|++|++++|+++.+|. +..+++|++|++++|.+....+. +..+++|+.|+
T Consensus 77 ~~L~~L~Ls~N-~l~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 77 PVLGTLDLSHN-QLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp TTCCEEECCSS-CCSSCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCEEECCCC-cCCcCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 55555555553 344555433 455555555555555555543 55555555555555544332222 34555555555
Q ss_pred ecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCC-cCCCCCCceEeecC
Q 003421 229 LSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK-FGYLKRLSRISIEG 278 (821)
Q Consensus 229 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~l~~L~~L~l~~ 278 (821)
+++|+ ++.++...+..+++|++|++++|.++.+|. +..+..|+.+++.+
T Consensus 155 L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 155 LANNN-LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp CTTSC-CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred CCCCc-CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCC
Confidence 55554 445554444555555555555555555543 33333344444433
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=1.7e-17 Score=171.07 Aligned_cols=196 Identities=19% Similarity=0.254 Sum_probs=138.0
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccc-cccccccCCCCCCCccEEEcCCCCCCCCc-ccccCC
Q 003421 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDL-SSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIELL 151 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~l 151 (821)
+++++|++++|.+. .++...|.++++|++|++++|.+..++. .+..+++ |++|++++|.+.+.+ ..+.++
T Consensus 28 ~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-------L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH-------LSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTT-------CCEEECTTCCCCEECTTTTTTC
T ss_pred CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcC-------CCEEECCCCccCccChhhhcCC
Confidence 46888888888886 5555567788888888888888866654 5677777 888888888877655 457788
Q ss_pred CCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCc--CcC-cCCCCcccEEEccCCCCCCCCcc-cccCCccc--
Q 003421 152 KKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKF--LPS-LSKLFNLRFLILRDCSSLQKLPR-INELVRLE-- 225 (821)
Q Consensus 152 ~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~--lp~-l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~-- 225 (821)
++|++|++++| .+..++...++.+++|++|++++|.++. +|. +..+++|++|++++|.+....+. +..+.+|+
T Consensus 100 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 100 SSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp TTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred ccccEEECCCC-CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 88888888875 4455555445788888888888888876 566 88888888888888776554333 44444444
Q ss_pred --EEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCC--cCCCCCCceEeecCcc
Q 003421 226 --IIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK--FGYLKRLSRISIEGCK 280 (821)
Q Consensus 226 --~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~ 280 (821)
.|++++|. ++.+++..+ ...+|++|++++|.++.++. +..+++|+.|++++|.
T Consensus 179 ~l~L~ls~n~-l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 179 NLSLDLSLNP-MNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CEEEECCSSC-CCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ceeeecCCCc-ccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 77787776 566653333 33478888888888777664 4556666666666553
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=3.6e-17 Score=168.67 Aligned_cols=149 Identities=21% Similarity=0.228 Sum_probs=90.8
Q ss_pred EEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcc-cccCCCCccEEeccCCcCCCcCchHhhhCCCCccE
Q 003421 103 ALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQS 181 (821)
Q Consensus 103 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~ 181 (821)
.++..+..+..+|..+. .. |++|++++|.+.+.++ .+.++++|++|++++| .+..++...|.++++|++
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~-------l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 80 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FS-------TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLST 80 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TT-------CCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCE
T ss_pred eEEecCCCccccCCCCC--CC-------ccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCE
Confidence 34444555555665443 23 6777777666665443 5666777777777664 445555544566777777
Q ss_pred EEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCc--cChhhccCCCCCCEeeccC
Q 003421 182 LNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTF--FPEQDLSKHQHLQMIDLSR 256 (821)
Q Consensus 182 L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~ 256 (821)
|++++|.++.++. +..+++|++|++++|.+....+. +..+++|++|++++|. ++. +| ..++.+++|++|++++
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~-~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLP-EYFSNLTNLEHLDLSS 158 (276)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCC-GGGGGCTTCCEEECCS
T ss_pred EECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCc-hhhccCCCCCEEECCC
Confidence 7777777666553 66677777777776655443332 5666666666666665 333 33 5566677777777777
Q ss_pred cCCcCCC
Q 003421 257 TQIKRLP 263 (821)
Q Consensus 257 ~~l~~l~ 263 (821)
|.++.++
T Consensus 159 N~l~~~~ 165 (276)
T 2z62_A 159 NKIQSIY 165 (276)
T ss_dssp SCCCEEC
T ss_pred CCCCcCC
Confidence 7666543
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=1.4e-17 Score=167.63 Aligned_cols=193 Identities=18% Similarity=0.209 Sum_probs=160.0
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCC-CCcccc-cccccccCCCCCCCccEEEcCC-CCCCCCc-cccc
Q 003421 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSG-FKSLDL-SSKTEKKSEPEKLPMKLLVLRS-CNLLNGI-GDIE 149 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~-~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~-~~i~ 149 (821)
++++.|++++|.+. .++...|.++++|++|++++|. ++.++. .+..+++ |++|++++ |.+...+ ..+.
T Consensus 31 ~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~-------L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 31 PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK-------VTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp TTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTT-------CCEEEEEEETTCCEECTTSEE
T ss_pred CcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcC-------CcEEECCCCCCeeEcCHHHhC
Confidence 48999999999997 6777778899999999999997 888875 6788888 99999998 8887765 4688
Q ss_pred CCCCccEEeccCCcCCCcCchHhhhCCCCcc---EEEecCC-CCCcCcC--cCCCCccc-EEEccCCCCCCCCcc-cccC
Q 003421 150 LLKKLTVLEISGANSVQKIPDKLLDEMTKLQ---SLNLSGC-QMKFLPS--LSKLFNLR-FLILRDCSSLQKLPR-INEL 221 (821)
Q Consensus 150 ~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~---~L~l~~~-~i~~lp~--l~~l~~L~-~L~l~~~~~~~~l~~-l~~l 221 (821)
.+++|++|++++| .+..+|. |+.+++|+ +|++++| .++.+|. +..+++|+ +|++++|.+. .+|. ....
T Consensus 103 ~l~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~ 178 (239)
T 2xwt_C 103 ELPLLKFLGIFNT-GLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG 178 (239)
T ss_dssp CCTTCCEEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT
T ss_pred CCCCCCEEeCCCC-CCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC
Confidence 9999999999985 5666886 58888888 9999999 9998876 88999999 9999998765 5555 3333
Q ss_pred CcccEEeecCCCCCCccChhhccCC-CCCCEeeccCcCCcCCCCcCCCCCCceEeecCc
Q 003421 222 VRLEIIDLSGATSLTFFPEQDLSKH-QHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGC 279 (821)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~ 279 (821)
++|+.|++++|..++.+++..+..+ ++|++|++++|.++.+|.. .+++|+.|++.++
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIARNT 236 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECTTC
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeeccCc
Confidence 8999999999855778877778888 9999999999999988764 6677777777654
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=6.2e-17 Score=172.89 Aligned_cols=234 Identities=21% Similarity=0.282 Sum_probs=141.7
Q ss_pred cEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc--cccCCcccEEeec
Q 003421 155 TVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR--INELVRLEIIDLS 230 (821)
Q Consensus 155 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~ 230 (821)
++++.++ +.++.+|.++ .+++++|++++|+++.+|. |..+++|++|++++|.+.+.++. +.++++++.+...
T Consensus 12 ~~v~C~~-~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEES-TTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecC-CCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 4566655 4577788765 3678888888888888876 78888888888888887776665 6788887776555
Q ss_pred CCCCCCccChhhccCCCCCCEeeccCcCCcCCCCcC--CCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEE
Q 003421 231 GATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFG--YLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSEL 308 (821)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L 308 (821)
+++.++.+++..+..+++|++|++++|.++.++... ....+..+++.++..+..++..
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~-------------------- 147 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-------------------- 147 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT--------------------
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc--------------------
Confidence 444588887788899999999999999998877633 3334445555544433333211
Q ss_pred EecCCCCCCCCCCCCCC-CCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecC-CCCCCCCC--ccccccccEEEeecC
Q 003421 309 HLRDCPTLKRLPHIAGL-KNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSN-TKLKSLPP--LSNLHRLRKLFLKNC 384 (821)
Q Consensus 309 ~l~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~l~~--~~~l~~L~~L~l~~~ 384 (821)
.+..+ ..++.|++++|.+.. ++.......+|+.+++.+ |.++.+|. +..+++|+.|++++|
T Consensus 148 ------------~f~~~~~~l~~L~L~~N~i~~---i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 148 ------------SFVGLSFESVILWLNKNGIQE---IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp ------------SSTTSBSSCEEEECCSSCCCE---ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred ------------chhhcchhhhhhccccccccC---CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence 11222 234445555544332 122222233455555543 34555554 455555666666555
Q ss_pred CCcCcCCCCCCCCCcCEEeccCCCCCCcCCCCCCCCCCCEEEeeC
Q 003421 385 ELLEELPKMNGLENLEVLDLSGCSKLVEFPKLKDFPKLELLDISN 429 (821)
Q Consensus 385 ~~~~~l~~~~~l~~L~~L~l~~c~~l~~i~~l~~l~~L~~L~l~~ 429 (821)
+ ++.+|. ..+.+|+.|.+.++..++.+|.+.++++|+.+++.+
T Consensus 213 ~-l~~lp~-~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 213 R-IHSLPS-YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp C-CCCCCS-SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred C-cCccCh-hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 4 333332 234555555555555566666555666666666543
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=5.9e-17 Score=169.51 Aligned_cols=181 Identities=17% Similarity=0.300 Sum_probs=145.7
Q ss_pred EecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEec
Q 003421 80 LIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEI 159 (821)
Q Consensus 80 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l 159 (821)
.+..+.+...+. +..+++|++|+++++.+..++ .+..+++ |++|++++|.+.+..+ +..+++|++|++
T Consensus 25 ~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~l~-~~~~l~~-------L~~L~L~~n~i~~~~~-~~~l~~L~~L~L 92 (308)
T 1h6u_A 25 AAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIE-GVQYLNN-------LIGLELKDNQITDLAP-LKNLTKITELEL 92 (308)
T ss_dssp HTTCSSTTSEEC---HHHHHTCCEEECTTSCCCCCT-TGGGCTT-------CCEEECCSSCCCCCGG-GTTCCSCCEEEC
T ss_pred HhCCCCcCceec---HHHcCCcCEEEeeCCCccCch-hhhccCC-------CCEEEccCCcCCCChh-HccCCCCCEEEc
Confidence 334444443333 346789999999999998887 5788888 9999999999887656 899999999999
Q ss_pred cCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCCCCCccC
Q 003421 160 SGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFP 239 (821)
Q Consensus 160 ~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 239 (821)
++| .+..++ . +..+++|++|++++|.++.++.+..+++|++|++++|.+. .++.+..+++|+.|++++|. ++.++
T Consensus 93 ~~n-~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~-l~~~~ 167 (308)
T 1h6u_A 93 SGN-PLKNVS-A-IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQ-VSDLT 167 (308)
T ss_dssp CSC-CCSCCG-G-GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCCEEECCSSC-CCCCG
T ss_pred cCC-cCCCch-h-hcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccC-cCccccCCCCccEEEccCCc-CCCCh
Confidence 986 466666 3 5889999999999999999888999999999999998754 44558889999999999886 66665
Q ss_pred hhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCc
Q 003421 240 EQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGC 279 (821)
Q Consensus 240 ~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~ 279 (821)
. +..+++|++|++++|.++.++.+..+++|++|++++|
T Consensus 168 ~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 168 P--LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN 205 (308)
T ss_dssp G--GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTS
T ss_pred h--hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCC
Confidence 3 8889999999999999988877666666666666655
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=1.9e-17 Score=170.12 Aligned_cols=200 Identities=20% Similarity=0.244 Sum_probs=162.9
Q ss_pred ceeecCCCCCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCC
Q 003421 64 IKTICDPKKWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLN 143 (821)
Q Consensus 64 ~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 143 (821)
+........+++++.|++.+|.+. .++. +..+++|++|++++|.+..++ .+..+++ |++|++++|.+.+
T Consensus 31 ~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~-------L~~L~L~~n~l~~ 99 (272)
T 3rfs_A 31 VTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTN-------LTYLILTGNQLQS 99 (272)
T ss_dssp TTSEECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTT-------CCEEECTTSCCCC
T ss_pred cccccccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCch-hhcCCCC-------CCEEECCCCccCc
Confidence 333333345679999999999886 4442 678999999999999998775 6778877 9999999999987
Q ss_pred Ccc-cccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cc
Q 003421 144 GIG-DIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-IN 219 (821)
Q Consensus 144 ~~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~ 219 (821)
.++ .++.+++|++|++++| .+..++...|+.+++|++|++++|.++.+|. ++.+++|++|++++|.+....+. +.
T Consensus 100 ~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 178 (272)
T 3rfs_A 100 LPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178 (272)
T ss_dssp CCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhc
Confidence 765 4789999999999985 5667777777999999999999999999877 78999999999999987655555 68
Q ss_pred cCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccc
Q 003421 220 ELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKR 281 (821)
Q Consensus 220 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~ 281 (821)
.+++|+.|++++|. ++.+++..+..+++|++|++++|.+.. .+++|+.+++..+..
T Consensus 179 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~-----~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDC-----TCPGIRYLSEWINKH 234 (272)
T ss_dssp TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC-----CTTTTHHHHHHHHHT
T ss_pred CCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCCccc-----cCcHHHHHHHHHHhC
Confidence 99999999999987 677776778999999999999997763 345666666665543
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=8.7e-17 Score=166.46 Aligned_cols=194 Identities=20% Similarity=0.151 Sum_probs=161.9
Q ss_pred ccceecccCcceeecCCCCCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccE
Q 003421 54 LGRITQIDGMIKTICDPKKWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKL 133 (821)
Q Consensus 54 l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~ 133 (821)
+..+....+.++.++... .++++.|++++|.+. .+....|.++++|++|++++|.+..++.. ..+.+ |++
T Consensus 12 l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~-------L~~ 81 (290)
T 1p9a_G 12 HLEVNCDKRNLTALPPDL-PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPV-------LGT 81 (290)
T ss_dssp CCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTT-------CCE
T ss_pred ccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCc-------CCE
Confidence 344444445555554322 368999999999997 56556689999999999999999888764 66666 999
Q ss_pred EEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCC
Q 003421 134 LVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSS 211 (821)
Q Consensus 134 L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~ 211 (821)
|++++|.+...+..+..+++|++|++++| .+..+|+..|..+++|++|++++|.++.+|. +..+++|++|++++|.+
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 99999999987778899999999999985 6778887777999999999999999999887 78999999999999987
Q ss_pred CCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCc
Q 003421 212 LQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIK 260 (821)
Q Consensus 212 ~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 260 (821)
....+. +..+++|+.|++++|. ++.+| ..+....+|+.+++++|.+.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~-l~~ip-~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENS-LYTIP-KGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCCCSEEECCSCCBC
T ss_pred CccCHHHhcCcCCCCEEECCCCc-CCccC-hhhcccccCCeEEeCCCCcc
Confidence 644334 5889999999999987 78888 56777889999999999886
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=1.7e-16 Score=169.52 Aligned_cols=238 Identities=16% Similarity=0.209 Sum_probs=154.1
Q ss_pred cEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcc-cccCCCCccEEeccCCcCCCcCchHhhhCCCCcc
Q 003421 102 HALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQ 180 (821)
Q Consensus 102 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~ 180 (821)
++++.++++++++|..+. .+ +++|++++|++...++ .|.++++|++|++++|...+.+|...|.++++|+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~-------l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RN-------AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TT-------CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred CEEEecCCCCCccCcCcC--CC-------CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence 466777777777776552 34 7777777777776553 5777788888888776656667776677777766
Q ss_pred E-EEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCC-CCCEeecc
Q 003421 181 S-LNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQ-HLQMIDLS 255 (821)
Q Consensus 181 ~-L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~ 255 (821)
+ +.+.+|+++.++. +..+++|++|++++|.+....+. +....++..+++.++..++.++...+..+. .++.|+++
T Consensus 83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp EEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred hhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 4 4555677777754 77788888888887765433332 345556777777776667777655555553 57778888
Q ss_pred CcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcCEEEecC
Q 003421 256 RTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLPHIAGLKNLEVLDVSG 335 (821)
Q Consensus 256 ~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~ 335 (821)
+|.++.++.- ... ..+|+.+.+.+
T Consensus 163 ~N~i~~i~~~---------------------------------~f~-----------------------~~~L~~l~l~~ 186 (350)
T 4ay9_X 163 KNGIQEIHNS---------------------------------AFN-----------------------GTQLDELNLSD 186 (350)
T ss_dssp SSCCCEECTT---------------------------------SST-----------------------TEEEEEEECTT
T ss_pred cccccCCChh---------------------------------hcc-----------------------ccchhHHhhcc
Confidence 8877765531 111 12333344433
Q ss_pred CCCCCcccChhhhcCCCCCcEEEecCCCCCCCCCccccccccEEEeecCCCcCcCCCCCCCCCcCEEeccC
Q 003421 336 TSDSKFAISDESFHDLDYLRELNLSNTKLKSLPPLSNLHRLRKLFLKNCELLEELPKMNGLENLEVLDLSG 406 (821)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~ 406 (821)
+...+ ...+..|..+++|+.|++++|+++.+|. ..+.+|+.|.+.++...+.+|.+..+++|+.+++.+
T Consensus 187 ~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 187 NNNLE-ELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred CCccc-CCCHHHhccCcccchhhcCCCCcCccCh-hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 22222 2333456666777777777777777775 235566677776777777777778888888888765
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=8.1e-16 Score=155.90 Aligned_cols=169 Identities=24% Similarity=0.305 Sum_probs=89.5
Q ss_pred CCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcc-cccCCCCccEEeccCCcCCCcCchHhhhCCCC
Q 003421 100 QLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIELLKKLTVLEISGANSVQKIPDKLLDEMTK 178 (821)
Q Consensus 100 ~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~ 178 (821)
..++++++++.+..+|..+. .. +++|++++|.+.+..+ .+.++++|++|++++| .+..++...|..+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~-------l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 84 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--AD-------TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTE 84 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TT-------CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTT
T ss_pred CCeEEecCCCCccccCCCCC--CC-------CCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCc
Confidence 34455555555555555443 23 5566666555555442 3555566666666553 334444444455566
Q ss_pred ccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeecc
Q 003421 179 LQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLS 255 (821)
Q Consensus 179 L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 255 (821)
|++|++++|.++.+|. +..+++|++|++++|.+....+. +..+++|+.|++++|. ++.+++..++.+++|++|+++
T Consensus 85 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECC
Confidence 6666666666555543 55556666666665554433222 3555566666665554 445554455556666666666
Q ss_pred CcCCcCCCC--cCCCCCCceEeecCc
Q 003421 256 RTQIKRLPK--FGYLKRLSRISIEGC 279 (821)
Q Consensus 256 ~~~l~~l~~--~~~l~~L~~L~l~~~ 279 (821)
+|.++.++. +..+++|+.|++++|
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 666555442 444444444444443
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=4.8e-17 Score=170.67 Aligned_cols=220 Identities=19% Similarity=0.167 Sum_probs=164.7
Q ss_pred CceeEEEecCCCccccccHHH--HhcCcCCcEEEeecCCC-Ccccccc--cccccCCCCCCCccEEEcCCCCCCCCcc--
Q 003421 74 DEVSTLLIDGDRLRLEVDEGF--LARMKQLHALAIFNSGF-KSLDLSS--KTEKKSEPEKLPMKLLVLRSCNLLNGIG-- 146 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~--~~~l~~L~~L~l~~~~~-~~l~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~-- 146 (821)
..++.+.+.++.+.......+ +..+++|++|++++|.+ +..|..+ ..+.+ |++|++++|.+.+..+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~-------L~~L~Ls~n~i~~~~~~~ 136 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLA-------LSSLRLRNVSWATGRSWL 136 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBC-------CSSCEEESCCCSSTTSSH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCC-------CCEEEeecccccchhhhh
Confidence 467888888887753222211 23467899999999998 4566666 77877 9999999999886432
Q ss_pred ---cccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCc---CcC---cCCCCcccEEEccCCCCCCCCcc
Q 003421 147 ---DIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKF---LPS---LSKLFNLRFLILRDCSSLQKLPR 217 (821)
Q Consensus 147 ---~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~---lp~---l~~l~~L~~L~l~~~~~~~~l~~ 217 (821)
.+..+++|++|++++|. +..++...++.+++|++|++++|++.. ++. ++.+++|++|++++|.+. .++.
T Consensus 137 ~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~ 214 (310)
T 4glp_A 137 AELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTG 214 (310)
T ss_dssp HHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHH
T ss_pred HHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHH
Confidence 34579999999999864 566666666899999999999998764 432 578999999999999764 3333
Q ss_pred -----cccCCcccEEeecCCCCCCccChhhccCC---CCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccc
Q 003421 218 -----INELVRLEIIDLSGATSLTFFPEQDLSKH---QHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIK 289 (821)
Q Consensus 218 -----l~~l~~L~~L~l~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~ 289 (821)
+..+++|++|++++|. ++...+..+..+ ++|++|++++|.++.+|..- .++|+.|++++|.. +.++.
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l-~~~~~-- 289 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRL-NRAPQ-- 289 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCC-CSCCC--
T ss_pred HHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcC-CCCch--
Confidence 3678999999999988 555422455555 69999999999999887622 37999999998753 22221
Q ss_pred cCCCCCCCCCCCCCCCcEEEecCCCCC
Q 003421 290 PRDSNTKSKPLFPVSLSELHLRDCPTL 316 (821)
Q Consensus 290 ~~~~~~~~~~~~~~~L~~L~l~~~~~~ 316 (821)
+..+++|++|++++|...
T Consensus 290 ---------~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 290 ---------PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp ---------TTSCCCCSCEECSSTTTS
T ss_pred ---------hhhCCCccEEECcCCCCC
Confidence 456789999999998654
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=6.9e-16 Score=159.84 Aligned_cols=168 Identities=21% Similarity=0.259 Sum_probs=107.8
Q ss_pred cCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCC
Q 003421 97 RMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEM 176 (821)
Q Consensus 97 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l 176 (821)
.+++|++|+++++.+..++. +..+++ |++|++++|.+.+..+ +..+++|++|++++| .+..+|. +..+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~-------L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l 111 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG-IQYLPN-------VTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS--LKDL 111 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT-GGGCTT-------CCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG--GTTC
T ss_pred hcCcccEEEccCCCcccChh-HhcCCC-------CCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh--hccC
Confidence 45666666666666666543 555555 7777776666665444 666667777777664 3444443 4667
Q ss_pred CCccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccC
Q 003421 177 TKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSR 256 (821)
Q Consensus 177 ~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 256 (821)
++|++|++++|.++.++.+..+++|++|++++|.+.. ++.+..+++|+.|++++|. ++.+++ +..+++|++|++++
T Consensus 112 ~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSK 187 (291)
T ss_dssp TTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCS
T ss_pred CCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCc-chhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCC
Confidence 7777777777776666556666777777777665443 3556667777777777665 555542 66677777777777
Q ss_pred cCCcCCCCcCCCCCCceEeecCcc
Q 003421 257 TQIKRLPKFGYLKRLSRISIEGCK 280 (821)
Q Consensus 257 ~~l~~l~~~~~l~~L~~L~l~~~~ 280 (821)
|.++.++.+..+++|+.|++++|.
T Consensus 188 N~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 188 NHISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp SCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred CcCCCChhhccCCCCCEEECcCCc
Confidence 777776666666666666666653
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=4.4e-16 Score=163.34 Aligned_cols=222 Identities=14% Similarity=0.105 Sum_probs=153.3
Q ss_pred CcCCcEEEeecCCCCc--ccc--cccccccCCCCCCCccEEEcCCCCCCCCc-ccc--cCCCCccEEeccCCcCCCcCc-
Q 003421 98 MKQLHALAIFNSGFKS--LDL--SSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDI--ELLKKLTVLEISGANSVQKIP- 169 (821)
Q Consensus 98 l~~L~~L~l~~~~~~~--l~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i--~~l~~L~~L~l~~~~~~~~lp- 169 (821)
...++.+.+.+..+.. +.. ....+.. |++|++++|.+.+.. ..+ ..+++|++|++++|......+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~-------L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~ 135 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSR-------LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW 135 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSC-------CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCc-------eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh
Confidence 4567888888877621 211 1223455 999999999988765 345 889999999999976554443
Q ss_pred --hHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCC--Cc--c-cccCCcccEEeecCCCCCCccCh
Q 003421 170 --DKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQK--LP--R-INELVRLEIIDLSGATSLTFFPE 240 (821)
Q Consensus 170 --~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~--l~--~-l~~l~~L~~L~l~~~~~~~~~~~ 240 (821)
...+..+++|++|++++|.+..++. ++.+++|++|++++|.+.+. ++ . +..+++|++|++++|. ++.++.
T Consensus 136 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~ 214 (310)
T 4glp_A 136 LAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTG 214 (310)
T ss_dssp HHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHH
T ss_pred hHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHH
Confidence 2223579999999999999998764 89999999999999986542 22 2 3789999999999987 655542
Q ss_pred h---hccCCCCCCEeeccCcCCcCC-CC-cCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCC
Q 003421 241 Q---DLSKHQHLQMIDLSRTQIKRL-PK-FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPT 315 (821)
Q Consensus 241 ~---~l~~l~~L~~L~l~~~~l~~l-~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 315 (821)
. .++.+++|++|++++|.++.. |. +..+ ..+++|++|++++|..
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~-------------------------------~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC-------------------------------MWSSALNSLNLSFAGL 263 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC-------------------------------CCCTTCCCEECCSSCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCccchhhHHhc-------------------------------cCcCcCCEEECCCCCC
Confidence 1 357889999999999999986 43 3333 1123455555555433
Q ss_pred CCCCC-CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCC
Q 003421 316 LKRLP-HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLK 365 (821)
Q Consensus 316 ~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 365 (821)
. .+| .+ .++|+.|++++|.+... +. +..+++|+.|++++|.++
T Consensus 264 ~-~lp~~~--~~~L~~L~Ls~N~l~~~---~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 264 E-QVPKGL--PAKLRVLDLSSNRLNRA---PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp C-SCCSCC--CSCCSCEECCSCCCCSC---CC-TTSCCCCSCEECSSTTTS
T ss_pred C-chhhhh--cCCCCEEECCCCcCCCC---ch-hhhCCCccEEECcCCCCC
Confidence 3 333 22 25677777777765441 21 456677777777777665
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=5.2e-17 Score=172.91 Aligned_cols=146 Identities=23% Similarity=0.252 Sum_probs=84.4
Q ss_pred ceeEEEecCCCccccccHHHHhcC--cCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCC-c-ccccC
Q 003421 75 EVSTLLIDGDRLRLEVDEGFLARM--KQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNG-I-GDIEL 150 (821)
Q Consensus 75 ~l~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~-~~i~~ 150 (821)
.+++++++++.+. ...+..+ +++++|++++|.+...+..+..+.+ |++|++++|.+.+. . ..+..
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~-------L~~L~L~~~~l~~~~~~~~~~~ 116 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-------VQHMDLSNSVIEVSTLHGILSQ 116 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBC-------CCEEECTTCEECHHHHHHHHTT
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCC-------CCEEEccCCCcCHHHHHHHHhh
Confidence 4667788777665 2334455 7777777777777555555555555 77777777765432 2 34566
Q ss_pred CCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCC-CCCc--CcC-cCCCCcccEEEccCC-CCCCC-Ccc-cccCC-
Q 003421 151 LKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGC-QMKF--LPS-LSKLFNLRFLILRDC-SSLQK-LPR-INELV- 222 (821)
Q Consensus 151 l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~-~i~~--lp~-l~~l~~L~~L~l~~~-~~~~~-l~~-l~~l~- 222 (821)
+++|++|++++|......+..+ +.+++|++|++++| .+++ ++. +..+++|++|++++| .+... ++. +..++
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 195 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred CCCCCEEeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence 6677777776654333344433 55666666666666 4553 444 555666666666665 33221 233 34455
Q ss_pred cccEEeecCC
Q 003421 223 RLEIIDLSGA 232 (821)
Q Consensus 223 ~L~~L~l~~~ 232 (821)
+|+.|++++|
T Consensus 196 ~L~~L~l~~~ 205 (336)
T 2ast_B 196 TITQLNLSGY 205 (336)
T ss_dssp TCCEEECCSC
T ss_pred CCCEEEeCCC
Confidence 5555555554
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=1.2e-15 Score=154.69 Aligned_cols=174 Identities=24% Similarity=0.300 Sum_probs=132.4
Q ss_pred ceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccc-cccccccCCCCCCCccEEEcCCCCCCCCcc-cccCCC
Q 003421 75 EVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDL-SSKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIELLK 152 (821)
Q Consensus 75 ~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~~l~ 152 (821)
..++++++++.+. .++..+ .+++++|++++|.+..++. .+..+++ |++|++++|.+.+.++ .+..++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~-------L~~L~L~~n~l~~~~~~~~~~l~ 83 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTK-------LTWLNLDYNQLQTLSAGVFDDLT 83 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTT-------CCEEECTTSCCCCCCTTTTTTCT
T ss_pred CCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCccc-------CCEEECCCCcCCccCHhHhccCC
Confidence 4556777777775 566432 2578888888888866553 5777777 8888888888877654 477888
Q ss_pred CccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEee
Q 003421 153 KLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDL 229 (821)
Q Consensus 153 ~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l 229 (821)
+|++|++++| .+..+|...|..+++|++|++++|.++.+|. +..+++|++|++++|.+....+. +..+++|+.|++
T Consensus 84 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 84 ELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp TCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCEEECCCC-cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence 8888888874 5667777767888888888888888888776 67888888888888876654443 778888888888
Q ss_pred cCCCCCCccChhhccCCCCCCEeeccCcCCcC
Q 003421 230 SGATSLTFFPEQDLSKHQHLQMIDLSRTQIKR 261 (821)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 261 (821)
++|. ++.+++..+..+++|++|++++|.+..
T Consensus 163 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 163 STNQ-LQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CSSC-CSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCc-CCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 8876 667776678888889999998888864
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=2e-16 Score=168.36 Aligned_cols=246 Identities=16% Similarity=0.186 Sum_probs=172.5
Q ss_pred cCCcEEEeecCCCCccccccccc--ccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCc-CchHhhhC
Q 003421 99 KQLHALAIFNSGFKSLDLSSKTE--KKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQK-IPDKLLDE 175 (821)
Q Consensus 99 ~~L~~L~l~~~~~~~l~~~~~~l--~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~-lp~~~~~~ 175 (821)
..++.++++++.+. +..+..+ .. +++|++++|.+.+.++.+..+++|++|++++|..... +|. ++..
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~-------l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-~~~~ 116 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQG-------VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG-ILSQ 116 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTT-------CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH-HHTT
T ss_pred hhheeeccccccCC--HHHHHhhhhcc-------ceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH-HHhh
Confidence 45899999998875 4555665 66 9999999999888777788899999999999764333 454 4589
Q ss_pred CCCccEEEecCCCCCc-CcC-cCCCCcccEEEccCCCCCC--CCcc-cccCCcccEEeecCCCCCCc--cChhhccCCC-
Q 003421 176 MTKLQSLNLSGCQMKF-LPS-LSKLFNLRFLILRDCSSLQ--KLPR-INELVRLEIIDLSGATSLTF--FPEQDLSKHQ- 247 (821)
Q Consensus 176 l~~L~~L~l~~~~i~~-lp~-l~~l~~L~~L~l~~~~~~~--~l~~-l~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~- 247 (821)
+++|++|++++|.+++ .+. ++.+++|++|++++|.... .++. +..+++|++|++++|..++. ++ ..+..++
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~l~~ 195 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ-VAVAHVSE 195 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH-HHHHHSCT
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH-HHHHhccc
Confidence 9999999999999885 555 8889999999999994333 3565 68899999999999933654 33 5678899
Q ss_pred CCCEeeccCcC--Cc--CCCC-cCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCC
Q 003421 248 HLQMIDLSRTQ--IK--RLPK-FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLPHI 322 (821)
Q Consensus 248 ~L~~L~l~~~~--l~--~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 322 (821)
+|++|++++|. ++ .++. +..+++|++|++++|..++. ..++.+
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~--------------------------------~~~~~l 243 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN--------------------------------DCFQEF 243 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG--------------------------------GGGGGG
T ss_pred CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH--------------------------------HHHHHH
Confidence 99999999994 44 3443 55677777777776643221 111234
Q ss_pred CCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--cccc-ccccEEEeecCCCcCcCCC
Q 003421 323 AGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNL-HRLRKLFLKNCELLEELPK 392 (821)
Q Consensus 323 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l-~~L~~L~l~~~~~~~~l~~ 392 (821)
..+++|+.|++++|.... +.....+..+++|+.|++++| ++. +..+ .+++.|++++|++.+..|.
T Consensus 244 ~~l~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 244 FQLNYLQHLSLSRCYDII-PETLLELGEIPTLKTLQVFGI----VPDGTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGCTTCCEEECTTCTTCC-GGGGGGGGGCTTCCEEECTTS----SCTTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred hCCCCCCEeeCCCCCCCC-HHHHHHHhcCCCCCEEeccCc----cCHHHHHHHHhhCcceEEecccCccccCC
Confidence 455666666666664222 122234566777777777777 232 3333 3466666777776665554
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=1.6e-15 Score=157.08 Aligned_cols=180 Identities=17% Similarity=0.271 Sum_probs=152.4
Q ss_pred eeecCCCCCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCC
Q 003421 65 KTICDPKKWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNG 144 (821)
Q Consensus 65 ~~~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 144 (821)
..+.....+++++.|++++|.+. .++. +..+++|++|++++|.+..++. +..+++ |++|++++|.+.+
T Consensus 37 ~~~~~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~-------L~~L~l~~n~l~~- 104 (291)
T 1h6t_A 37 TDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKN-------LGWLFLDENKVKD- 104 (291)
T ss_dssp TSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTT-------CCEEECCSSCCCC-
T ss_pred ccccchhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc-cccCCC-------CCEEECCCCcCCC-
Confidence 33333335678999999999987 4543 7889999999999999988887 888888 9999999999876
Q ss_pred cccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcc
Q 003421 145 IGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRL 224 (821)
Q Consensus 145 ~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L 224 (821)
++.+..+++|++|++++| .+..++ . +..+++|++|++++|.++.++.+..+++|++|++++|.+... +.+..+++|
T Consensus 105 ~~~l~~l~~L~~L~L~~n-~i~~~~-~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~-~~l~~l~~L 180 (291)
T 1h6t_A 105 LSSLKDLKKLKSLSLEHN-GISDIN-G-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKL 180 (291)
T ss_dssp GGGGTTCTTCCEEECTTS-CCCCCG-G-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGTTCTTC
T ss_pred ChhhccCCCCCEEECCCC-cCCCCh-h-hcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccc-hhhcCCCcc
Confidence 556999999999999986 566664 3 589999999999999999996699999999999999986554 449999999
Q ss_pred cEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCC
Q 003421 225 EIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLP 263 (821)
Q Consensus 225 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~ 263 (821)
+.|++++|. ++.++ .+..+++|+.|++++|.+...|
T Consensus 181 ~~L~L~~N~-i~~l~--~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 181 QNLYLSKNH-ISDLR--ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CEEECCSSC-CCBCG--GGTTCTTCSEEEEEEEEEECCC
T ss_pred CEEECCCCc-CCCCh--hhccCCCCCEEECcCCcccCCc
Confidence 999999987 77775 4899999999999999988754
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=3e-17 Score=178.18 Aligned_cols=39 Identities=8% Similarity=0.142 Sum_probs=20.1
Q ss_pred HhcCcCCcEEEeecCCCCc-----ccccccccccCCCCCCCccEEEcCCCC
Q 003421 95 LARMKQLHALAIFNSGFKS-----LDLSSKTEKKSEPEKLPMKLLVLRSCN 140 (821)
Q Consensus 95 ~~~l~~L~~L~l~~~~~~~-----l~~~~~~l~~~~~~~~~L~~L~l~~~~ 140 (821)
+..+++|++|++++|.++. ++..+..+++ |++|++++|.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-------L~~L~Ls~~~ 71 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD-------LEIAEFSDIF 71 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTT-------CCEEECCSCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCC-------ccEEeCcccc
Confidence 4455666666666665522 2233444444 5555555543
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=1.1e-15 Score=173.66 Aligned_cols=171 Identities=18% Similarity=0.295 Sum_probs=81.1
Q ss_pred CCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCC
Q 003421 72 KWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELL 151 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l 151 (821)
.+++|+.|++++|.+. .++ .+..+++|+.|+|++|.+..++. +..+.+ |++|++++|.+.. ++.+..+
T Consensus 41 ~L~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~-------L~~L~Ls~N~l~~-l~~l~~l 108 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP-LTNLKN-------LGWLFLDENKIKD-LSSLKDL 108 (605)
T ss_dssp HHTTCCCCBCTTCCCC-CCT--TGGGCTTCCEEECTTSCCCCCGG-GGGCTT-------CCEEECCSSCCCC-CTTSTTC
T ss_pred cCCCCCEEECcCCCCC-CCh--HHccCCCCCEEEeeCCCCCCChh-hccCCC-------CCEEECcCCCCCC-ChhhccC
Confidence 3445555555555543 232 14445555555555555544443 444444 5555555555443 2344555
Q ss_pred CCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcccEEeecC
Q 003421 152 KKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSG 231 (821)
Q Consensus 152 ~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~ 231 (821)
++|++|++++| .+..++. +..+++|+.|++++|.++.++.+..+++|+.|++++|.+....| +..+++|+.|++++
T Consensus 109 ~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 109 KKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSK 184 (605)
T ss_dssp TTCCEEECTTS-CCCCCGG--GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred CCCCEEEecCC-CCCCCcc--ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcC
Confidence 55555555543 2333322 24455555555555555554335555555555555554333222 44455555555555
Q ss_pred CCCCCccChhhccCCCCCCEeeccCcCCcC
Q 003421 232 ATSLTFFPEQDLSKHQHLQMIDLSRTQIKR 261 (821)
Q Consensus 232 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 261 (821)
|. +..++ .+..+++|+.|++++|.+..
T Consensus 185 N~-i~~l~--~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 185 NH-ISDLR--ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SC-CCBCG--GGTTCTTCSEEECCSEEEEC
T ss_pred CC-CCCCh--HHccCCCCCEEEccCCcCcC
Confidence 43 33332 34445555555555554443
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=8e-15 Score=142.43 Aligned_cols=151 Identities=16% Similarity=0.197 Sum_probs=80.1
Q ss_pred cCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCC
Q 003421 97 RMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEM 176 (821)
Q Consensus 97 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l 176 (821)
.+++|++|++++|.+..+| .+..+++ |++|++++|.+.. ++.+..+++|++|++++|......|.. ++.+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~-------L~~L~l~~n~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l 111 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHN-------IKDLTINNIHATN-YNPISGLSNLERLRIMGKDVTSDKIPN-LSGL 111 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTT-------CSEEEEESCCCSC-CGGGTTCTTCCEEEEECTTCBGGGSCC-CTTC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCC-------CCEEEccCCCCCc-chhhhcCCCCCEEEeECCccCcccChh-hcCC
Confidence 4566666666666666655 4555555 6666666664432 234555666666666654332223333 2555
Q ss_pred CCccEEEecCCCCCc-CcC-cCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCCCCCccChhhccCCCCCCEeec
Q 003421 177 TKLQSLNLSGCQMKF-LPS-LSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDL 254 (821)
Q Consensus 177 ~~L~~L~l~~~~i~~-lp~-l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 254 (821)
++|++|++++|.++. .|. ++.+++|++|++++|.....++.+..+++|+.|++++|. ++.++ .+..+++|++|++
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~--~l~~l~~L~~L~l 188 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR--GIEDFPKLNQLYA 188 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCT--TGGGCSSCCEEEE
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChH--HhccCCCCCEEEe
Confidence 666666666665554 233 555566666666655534444445555555555555554 34333 3455555555555
Q ss_pred cCcCCc
Q 003421 255 SRTQIK 260 (821)
Q Consensus 255 ~~~~l~ 260 (821)
++|.+.
T Consensus 189 ~~N~i~ 194 (197)
T 4ezg_A 189 FSQTIG 194 (197)
T ss_dssp CBC---
T ss_pred eCcccC
Confidence 555543
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=2.4e-15 Score=153.13 Aligned_cols=170 Identities=19% Similarity=0.206 Sum_probs=102.3
Q ss_pred CCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCC
Q 003421 73 WDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLK 152 (821)
Q Consensus 73 ~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~ 152 (821)
+.++..+++.++.+. .++ .+..+++|++|++++|.+..++ .+..+.+ |++|++++|.+.+.++ +..++
T Consensus 18 l~~l~~l~l~~~~i~-~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~-------L~~L~L~~N~i~~~~~-l~~l~ 85 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTN-------LKELHLSHNQISDLSP-LKDLT 85 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTT-------CCEEECCSSCCCCCGG-GTTCS
T ss_pred HHHHHHHHhcCCCcc-ccc--chhhcCcCcEEECcCCCcccch-HHhhCCC-------CCEEECCCCccCCChh-hccCC
Confidence 345555566666665 333 2456677777777777766666 4566666 7777777666665444 66666
Q ss_pred CccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCC
Q 003421 153 KLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGA 232 (821)
Q Consensus 153 ~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~ 232 (821)
+|++|++++| .+..+|.. .. ++|++|++++|.++.++.+..+++|++|++++|.+. .++.+..+++|+.|++++|
T Consensus 86 ~L~~L~L~~N-~l~~l~~~--~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~-~~~~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 86 KLEELSVNRN-RLKNLNGI--PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGN 160 (263)
T ss_dssp SCCEEECCSS-CCSCCTTC--CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCC-BCGGGGGCTTCCEEECTTS
T ss_pred CCCEEECCCC-ccCCcCcc--cc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCC-CChHHccCCCCCEEECCCC
Confidence 6667766663 44455542 22 666666666666666655666666666666666533 2345566666666666665
Q ss_pred CCCCccChhhccCCCCCCEeeccCcCCcCC
Q 003421 233 TSLTFFPEQDLSKHQHLQMIDLSRTQIKRL 262 (821)
Q Consensus 233 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l 262 (821)
. ++.+ ..+..+++|+.|++++|.+...
T Consensus 161 ~-i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 161 E-ITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C-CCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred c-Ccch--HHhccCCCCCEEeCCCCcccCC
Confidence 5 4444 3455666666666666665544
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=1.8e-14 Score=163.66 Aligned_cols=189 Identities=20% Similarity=0.227 Sum_probs=158.2
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCC
Q 003421 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKK 153 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~ 153 (821)
.++..+.+..+.+...+. +..+++|+.|+++++.+..++ .+..+.+ |++|++++|.+.+.++ +..+++
T Consensus 21 ~~l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~-~l~~l~~-------L~~L~Ls~N~l~~~~~-l~~l~~ 88 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQ-GIQYLPN-------VTKLFLNGNKLTDIKP-LTNLKN 88 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCT-TGGGCTT-------CCEEECTTSCCCCCGG-GGGCTT
T ss_pred HHHHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCCh-HHccCCC-------CCEEEeeCCCCCCChh-hccCCC
Confidence 344455556666654444 356899999999999998887 5788888 9999999999887655 899999
Q ss_pred ccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCC
Q 003421 154 LTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGAT 233 (821)
Q Consensus 154 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~ 233 (821)
|++|++++| .+..+| . +..+++|++|++++|.+..++.+..+++|+.|++++|.+.. ++.+..+++|+.|++++|.
T Consensus 89 L~~L~Ls~N-~l~~l~-~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 89 LGWLFLDEN-KIKDLS-S-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp CCEEECCSS-CCCCCT-T-STTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCC-CGGGGSCTTCSEEECCSSC
T ss_pred CCEEECcCC-CCCCCh-h-hccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCC-chhhcccCCCCEEECcCCc
Confidence 999999985 566666 3 58999999999999999998779999999999999997655 4778999999999999987
Q ss_pred CCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccc
Q 003421 234 SLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKR 281 (821)
Q Consensus 234 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~ 281 (821)
+..+++ +..+++|+.|++++|.++.++.+..+++|+.|++++|..
T Consensus 165 -l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 165 -ISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp -CCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEE
T ss_pred -CCCchh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcC
Confidence 666653 889999999999999999998899999999999998764
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=1.1e-14 Score=148.22 Aligned_cols=167 Identities=19% Similarity=0.249 Sum_probs=141.6
Q ss_pred cCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCC
Q 003421 97 RMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEM 176 (821)
Q Consensus 97 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l 176 (821)
.+.++..++++++.+..++ .+..+.+ |++|++++|.+... +.+..+++|++|++++| .+..++. ++.+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~-------L~~L~l~~n~i~~l-~~l~~l~~L~~L~L~~N-~i~~~~~--l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSG-------VQNFNGDNSNIQSL-AGMQFFTNLKELHLSHN-QISDLSP--LKDL 84 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTT-------CSEEECTTSCCCCC-TTGGGCTTCCEEECCSS-CCCCCGG--GTTC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCc-------CcEEECcCCCcccc-hHHhhCCCCCEEECCCC-ccCCChh--hccC
Confidence 3566777888999998888 6888888 99999999988764 47889999999999985 5777776 5899
Q ss_pred CCccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccC
Q 003421 177 TKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSR 256 (821)
Q Consensus 177 ~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 256 (821)
++|++|++++|.++.+|.+.. ++|++|++++|.+.. ++.+..+++|+.|++++|. ++.++ .++.+++|++|++++
T Consensus 85 ~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~-i~~~~--~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 85 TKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNK-LKSIV--MLGFLSKLEVLDLHG 159 (263)
T ss_dssp SSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSC-CCBCG--GGGGCTTCCEEECTT
T ss_pred CCCCEEECCCCccCCcCcccc-CcccEEEccCCccCC-ChhhcCcccccEEECCCCc-CCCCh--HHccCCCCCEEECCC
Confidence 999999999999999988444 999999999987544 5678999999999999987 67664 588899999999999
Q ss_pred cCCcCCCCcCCCCCCceEeecCcc
Q 003421 257 TQIKRLPKFGYLKRLSRISIEGCK 280 (821)
Q Consensus 257 ~~l~~l~~~~~l~~L~~L~l~~~~ 280 (821)
|.++.++.+..+++|+.|++++|.
T Consensus 160 N~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 160 NEITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp SCCCBCTTSTTCCCCCEEEEEEEE
T ss_pred CcCcchHHhccCCCCCEEeCCCCc
Confidence 999988778888888888888764
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=4.1e-14 Score=139.80 Aligned_cols=148 Identities=12% Similarity=0.132 Sum_probs=93.9
Q ss_pred cEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcc--cccCCCCccEEeccCCcCCCcCchHhhhCCCCc
Q 003421 102 HALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIG--DIELLKKLTVLEISGANSVQKIPDKLLDEMTKL 179 (821)
Q Consensus 102 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L 179 (821)
++++++++.++.+|..+.. . +++|++++|.+...++ .+..+++|++|++++| .+..++...|..+++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~~--~-------~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ--Y-------TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGV 83 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT--T-------CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred CEeEeCCCCcccCccCCCC--C-------CCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCC
Confidence 4566666666666654433 2 6667776666665432 3566677777777663 4555555445667777
Q ss_pred cEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccC
Q 003421 180 QSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSR 256 (821)
Q Consensus 180 ~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 256 (821)
++|++++|.++.++. +..+++|++|++++|.+....|. +..+++|+.|++++|. ++.+++..+..+++|++|++++
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecC
Confidence 777777777766654 66677777777777665554444 5666777777777665 5555446677777777777777
Q ss_pred cCCc
Q 003421 257 TQIK 260 (821)
Q Consensus 257 ~~l~ 260 (821)
|.+.
T Consensus 163 N~l~ 166 (220)
T 2v70_A 163 NPFN 166 (220)
T ss_dssp CCEE
T ss_pred cCCc
Confidence 7665
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=1.7e-15 Score=162.55 Aligned_cols=125 Identities=19% Similarity=0.229 Sum_probs=60.2
Q ss_pred EEcCCCCCCCCcccccC-CCCccEEeccCCcCCCcCch----HhhhCCC-CccEEEecCCCCCcCcC--cCCC-----Cc
Q 003421 134 LVLRSCNLLNGIGDIEL-LKKLTVLEISGANSVQKIPD----KLLDEMT-KLQSLNLSGCQMKFLPS--LSKL-----FN 200 (821)
Q Consensus 134 L~l~~~~~~~~~~~i~~-l~~L~~L~l~~~~~~~~lp~----~~~~~l~-~L~~L~l~~~~i~~lp~--l~~l-----~~ 200 (821)
..++.+.+.+.++.+.. .++|++|++++|. ++..+. ..+..++ +|++|++++|.++.... +..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 34445555444433322 3336666666532 444443 3345555 56666666666554321 3332 56
Q ss_pred ccEEEccCCCCCCCCcc-----cccC-CcccEEeecCCCCCCccChhh----ccC-CCCCCEeeccCcCCc
Q 003421 201 LRFLILRDCSSLQKLPR-----INEL-VRLEIIDLSGATSLTFFPEQD----LSK-HQHLQMIDLSRTQIK 260 (821)
Q Consensus 201 L~~L~l~~~~~~~~l~~-----l~~l-~~L~~L~l~~~~~~~~~~~~~----l~~-l~~L~~L~l~~~~l~ 260 (821)
|++|++++|.+....+. +..+ ++|+.|++++|. ++..+... +.. .++|++|++++|.++
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 66666666554433332 2223 556666665554 34333322 222 245666666666555
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=4.2e-14 Score=158.76 Aligned_cols=179 Identities=22% Similarity=0.318 Sum_probs=86.2
Q ss_pred CCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCc
Q 003421 100 QLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKL 179 (821)
Q Consensus 100 ~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L 179 (821)
+|++|++++|.++.+|..+. ++ |++|++++|.+...+ ..+++|++|++++| .+..+|. + .. +|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~-------L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l-~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQ-------ITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-L-PA--SL 122 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TT-------CSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-C-CT--TC
T ss_pred CccEEEeCCCCCCccCHhHc--CC-------CCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-h-hc--CC
Confidence 55555555555544554332 33 555555555554322 33455555555553 3333554 2 22 55
Q ss_pred cEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCC
Q 003421 180 QSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQI 259 (821)
Q Consensus 180 ~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 259 (821)
++|++++|.++.+|. .+++|++|++++|.+.. +|. .+++|+.|++++|. ++.+|. +. ++|+.|++++|.+
T Consensus 123 ~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 123 KHLDVDNNQLTMLPE--LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLL 192 (571)
T ss_dssp CEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCC
T ss_pred CEEECCCCcCCCCCC--cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCC
Confidence 555555555555554 44555555555554332 333 34555555555554 444442 33 5555555555555
Q ss_pred cCCCCcCCCCCC-------ceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCC
Q 003421 260 KRLPKFGYLKRL-------SRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKR 318 (821)
Q Consensus 260 ~~l~~~~~l~~L-------~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 318 (821)
+.+|.+.. +| +.|++++|. ++.++. .+..+++|+.|++++|...+.
T Consensus 193 ~~lp~~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~----------~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 193 ESLPAVPV--RNHHSEETEIFFRCRENR-ITHIPE----------NILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp SSCCCCC----------CCEEEECCSSC-CCCCCG----------GGGGSCTTEEEECCSSSCCHH
T ss_pred CchhhHHH--hhhcccccceEEecCCCc-ceecCH----------HHhcCCCCCEEEeeCCcCCCc
Confidence 55554222 44 555555542 112221 123355666666666655443
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=6.1e-14 Score=137.61 Aligned_cols=146 Identities=24% Similarity=0.300 Sum_probs=73.6
Q ss_pred EEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcc-cccCCCCccEEeccCCcCCCcCchHhhhCCCCccE
Q 003421 103 ALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQS 181 (821)
Q Consensus 103 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~ 181 (821)
.++++++++..+|..+. .+ |++|++++|.+...++ .++.+++|++|++++| .+..+|...|..+++|++
T Consensus 11 ~v~c~~~~l~~~p~~~~--~~-------l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIP--AQ-------TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTY 80 (208)
T ss_dssp EEECCSSCCSSCCSCCC--TT-------CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred EEEecCCCccCCCCCCC--CC-------CcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCE
Confidence 44455555555554332 23 5555555555554432 2455555555555553 344455444455555555
Q ss_pred EEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcC
Q 003421 182 LNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQ 258 (821)
Q Consensus 182 L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 258 (821)
|++++|.++.+|. +..+++|++|++++|.+....+. +..+++|+.|++++|. ++.++...+..+++|++|++++|.
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence 5555555555544 45555555555555544332222 3455555555555544 444443344555555555555553
Q ss_pred C
Q 003421 259 I 259 (821)
Q Consensus 259 l 259 (821)
+
T Consensus 160 ~ 160 (208)
T 2o6s_A 160 W 160 (208)
T ss_dssp B
T ss_pred e
Confidence 3
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=9.6e-14 Score=138.18 Aligned_cols=148 Identities=21% Similarity=0.278 Sum_probs=103.1
Q ss_pred CcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCc-ccccCCCCccEEeccCCcCCCcCchHhhhCCCCc
Q 003421 101 LHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIELLKKLTVLEISGANSVQKIPDKLLDEMTKL 179 (821)
Q Consensus 101 L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L 179 (821)
.+.++.++++++.+|..+. .+ |++|++++|.+.+.. ..+..+++|++|++++| .+..+|...|..+++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~-------L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L 90 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TN-------AQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQL 90 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TT-------CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCEeEccCCCcCccCCCCC--CC-------CCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCc
Confidence 4556666666666666543 44 777777777776654 35677777777777764 4566776666777777
Q ss_pred cEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccC
Q 003421 180 QSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSR 256 (821)
Q Consensus 180 ~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 256 (821)
++|++++|.++.++. +..+++|++|++++|.+. .+|. +..+++|+.|++++|. ++.++...+..+++|+.|++++
T Consensus 91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeC
Confidence 777777777777765 677777777777777654 4544 6777777777777765 6666656677778888888887
Q ss_pred cCCc
Q 003421 257 TQIK 260 (821)
Q Consensus 257 ~~l~ 260 (821)
|.+.
T Consensus 169 N~~~ 172 (229)
T 3e6j_A 169 NPWD 172 (229)
T ss_dssp SCBC
T ss_pred CCcc
Confidence 7766
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=6.6e-14 Score=137.35 Aligned_cols=169 Identities=21% Similarity=0.244 Sum_probs=132.8
Q ss_pred ccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccC
Q 003421 131 MKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRD 208 (821)
Q Consensus 131 L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~ 208 (821)
-+.++.+++.+...+..+ .++|++|++++| .+..++..+|+.+++|++|++++|.++.+|. +..+++|++|++++
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 467788888777665444 468999999985 5677888777999999999999999999877 78999999999999
Q ss_pred CCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCC--cCCCCCCceEeecCccccccc
Q 003421 209 CSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK--FGYLKRLSRISIEGCKRFHNF 285 (821)
Q Consensus 209 ~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~~ 285 (821)
|.+....+. +..+++|+.|++++|. ++.+++..+..+++|++|++++|.++.++. +..+++|+.|++++|..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~---- 160 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW---- 160 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB----
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe----
Confidence 987654444 6899999999999987 777776678899999999999999998765 67777888888877632
Q ss_pred cccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC
Q 003421 286 HEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP 320 (821)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 320 (821)
...+++|+.|+++.+...+.+|
T Consensus 161 -------------~~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 161 -------------DCTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp -------------CCCTTTTHHHHHHHHHCTTTBB
T ss_pred -------------ecCCCCHHHHHHHHHhCCceee
Confidence 2345566666666665555555
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=6.2e-14 Score=138.56 Aligned_cols=148 Identities=17% Similarity=0.254 Sum_probs=94.9
Q ss_pred cEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcc-cccCCCCccEEeccCCcCCCcCchHhhhCCCCcc
Q 003421 102 HALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQ 180 (821)
Q Consensus 102 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~ 180 (821)
+.+++++++++.+|..+. .. +++|++++|.+...++ .+..+++|++|++++| .+..+++..|..+++|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~-------l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~ 83 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ET-------ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLN 83 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TT-------CCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCC
T ss_pred CEEEcCCCCcCcCCCccC--cC-------CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCC
Confidence 456666666666665543 33 6777777776665443 5666777777777764 34444334446777777
Q ss_pred EEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCc
Q 003421 181 SLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRT 257 (821)
Q Consensus 181 ~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 257 (821)
+|++++|.++.+|. +..+++|++|++++|.+....+. +..+++|+.|++++|. ++.+++..+..+++|++|++++|
T Consensus 84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCC
Confidence 77777777777665 56677777777777665554444 5666777777777665 55555556677777777777777
Q ss_pred CCc
Q 003421 258 QIK 260 (821)
Q Consensus 258 ~l~ 260 (821)
.+.
T Consensus 163 ~~~ 165 (220)
T 2v9t_B 163 PFI 165 (220)
T ss_dssp CEE
T ss_pred CcC
Confidence 665
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=5.4e-15 Score=158.69 Aligned_cols=178 Identities=17% Similarity=0.175 Sum_probs=108.8
Q ss_pred CceeEEEecCCCccccccH----HHHhcCc-CCcEEEeecCCCCcc-ccccccc-----ccCCCCCCCccEEEcCCCCCC
Q 003421 74 DEVSTLLIDGDRLRLEVDE----GFLARMK-QLHALAIFNSGFKSL-DLSSKTE-----KKSEPEKLPMKLLVLRSCNLL 142 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~l-~~~~~~l-----~~~~~~~~~L~~L~l~~~~~~ 142 (821)
+++++|++++|.+. ..+. ..|.+++ +|++|++++|.++.. +..+..+ .. |++|++++|.+.
T Consensus 22 ~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~-------L~~L~Ls~n~l~ 93 (362)
T 3goz_A 22 HGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN-------VTSLNLSGNFLS 93 (362)
T ss_dssp TTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT-------CCEEECCSSCGG
T ss_pred CCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC-------ccEEECcCCcCC
Confidence 45778888888775 4443 5566677 788888888877443 3444443 55 888888877776
Q ss_pred CCcc-----cccCC-CCccEEeccCCcCCCcCchHhh----hC-CCCccEEEecCCCCCc-----CcC-cCCCC-cccEE
Q 003421 143 NGIG-----DIELL-KKLTVLEISGANSVQKIPDKLL----DE-MTKLQSLNLSGCQMKF-----LPS-LSKLF-NLRFL 204 (821)
Q Consensus 143 ~~~~-----~i~~l-~~L~~L~l~~~~~~~~lp~~~~----~~-l~~L~~L~l~~~~i~~-----lp~-l~~l~-~L~~L 204 (821)
+... .+..+ ++|++|++++|. ++..+...+ .. .++|++|++++|.+++ ++. +..++ +|++|
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 5442 24444 678888887754 444443322 23 3577888888777763 333 44444 77777
Q ss_pred EccCCCCCCCCcc-----cccC-CcccEEeecCCCCCCc-----cChhhccC-CCCCCEeeccCcCCcCC
Q 003421 205 ILRDCSSLQKLPR-----INEL-VRLEIIDLSGATSLTF-----FPEQDLSK-HQHLQMIDLSRTQIKRL 262 (821)
Q Consensus 205 ~l~~~~~~~~l~~-----l~~l-~~L~~L~l~~~~~~~~-----~~~~~l~~-l~~L~~L~l~~~~l~~l 262 (821)
++++|.+....+. +..+ ++|+.|++++|. ++. ++ ..+.. .++|++|++++|.++..
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~-~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELA-YIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHH-HHHHHSCTTCCEEECCSSCCCCC
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHH-HHHhcCCCCceEEECcCCCCCcH
Confidence 7777765544432 2334 477777777776 444 22 23333 34777777777777654
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=5.3e-14 Score=136.62 Aligned_cols=151 Identities=17% Similarity=0.212 Sum_probs=125.9
Q ss_pred cccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCc-CcC-
Q 003421 117 SSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKF-LPS- 194 (821)
Q Consensus 117 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~-lp~- 194 (821)
....+.+ |++|++++|.+...+ .+..+++|++|++++| .+..++ . +..+++|++|++++|.++. .+.
T Consensus 39 ~~~~l~~-------L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~ 107 (197)
T 4ezg_A 39 TEAQMNS-------LTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-P-ISGLSNLERLRIMGKDVTSDKIPN 107 (197)
T ss_dssp BHHHHHT-------CCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-G-GTTCTTCCEEEEECTTCBGGGSCC
T ss_pred ChhhcCC-------ccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-h-hhcCCCCCEEEeECCccCcccChh
Confidence 3466777 999999999988544 7889999999999986 555554 3 5889999999999999987 455
Q ss_pred cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCce
Q 003421 195 LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSR 273 (821)
Q Consensus 195 l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~ 273 (821)
++.+++|++|++++|.+....+. +..+++|+.|++++|..++.++ .+..+++|++|++++|.++.++.+..+++|+.
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~ 185 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQ 185 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCE
T ss_pred hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChHHhccCCCCCE
Confidence 99999999999999987765555 8899999999999987677775 58889999999999999998888888888888
Q ss_pred EeecCcc
Q 003421 274 ISIEGCK 280 (821)
Q Consensus 274 L~l~~~~ 280 (821)
|+++++.
T Consensus 186 L~l~~N~ 192 (197)
T 4ezg_A 186 LYAFSQT 192 (197)
T ss_dssp EEECBC-
T ss_pred EEeeCcc
Confidence 8887764
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=1.5e-13 Score=154.26 Aligned_cols=179 Identities=22% Similarity=0.300 Sum_probs=136.2
Q ss_pred ccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcCcCCCCcccEEEccCCC
Q 003421 131 MKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCS 210 (821)
Q Consensus 131 L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~ 210 (821)
|++|++++|.+.+.+..+ +++|++|++++| .+..+| ..+++|++|++++|.++.+|.+.. +|++|++++|.
T Consensus 61 L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 61 FSELQLNRLNLSSLPDNL--PPQITVLEITQN-ALISLP----ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQ 131 (571)
T ss_dssp CSEEECCSSCCSCCCSCC--CTTCSEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSC
T ss_pred ccEEEeCCCCCCccCHhH--cCCCCEEECcCC-CCcccc----cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCc
Confidence 999999999998866655 489999999985 566888 357999999999999999988443 99999999998
Q ss_pred CCCCCcccccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCcccccccccccc
Q 003421 211 SLQKLPRINELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKP 290 (821)
Q Consensus 211 ~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 290 (821)
+.. +|. .+++|+.|++++|. ++.+|. .+++|++|++++|.++.+|.+. ++|+.|++++|. ++
T Consensus 132 l~~-lp~--~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~-L~------- 193 (571)
T 3cvr_A 132 LTM-LPE--LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNL-LE------- 193 (571)
T ss_dssp CSC-CCC--CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSC-CS-------
T ss_pred CCC-CCC--cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCC-CC-------
Confidence 665 676 78999999999987 777773 5789999999999999888743 666666666553 11
Q ss_pred CCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCC-----CCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCC
Q 003421 291 RDSNTKSKPLFPVSLSELHLRDCPTLKRLPHIAG-----LKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLK 365 (821)
Q Consensus 291 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 365 (821)
.+|.+.. .+.|+.|++++|.+.. ++..+..+++|+.|++++|.++
T Consensus 194 ---------------------------~lp~~~~~L~~~~~~L~~L~Ls~N~l~~---lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 194 ---------------------------SLPAVPVRNHHSEETEIFFRCRENRITH---IPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp ---------------------------SCCCCC--------CCEEEECCSSCCCC---CCGGGGGSCTTEEEECCSSSCC
T ss_pred ---------------------------chhhHHHhhhcccccceEEecCCCccee---cCHHHhcCCCCCEEEeeCCcCC
Confidence 2222111 1223777777777543 5555666888888888888776
Q ss_pred C
Q 003421 366 S 366 (821)
Q Consensus 366 ~ 366 (821)
+
T Consensus 244 ~ 244 (571)
T 3cvr_A 244 S 244 (571)
T ss_dssp H
T ss_pred C
Confidence 3
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=5.3e-14 Score=150.73 Aligned_cols=150 Identities=23% Similarity=0.276 Sum_probs=74.5
Q ss_pred EEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcc-ccc-CCCCccEEeccCCcCCCcCchHhhhCCCCcc
Q 003421 103 ALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIE-LLKKLTVLEISGANSVQKIPDKLLDEMTKLQ 180 (821)
Q Consensus 103 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~-~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~ 180 (821)
+++++++++..+|..+.. . +++|++++|.+...++ .+. .+++|++|++++| .+..++...|..+++|+
T Consensus 22 ~l~c~~~~l~~iP~~~~~--~-------l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLPS--Y-------TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLR 91 (361)
T ss_dssp EEECCSSCCSSCCSSCCT--T-------CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred EEEeCCCCcCccCccCCC--C-------CCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCC
Confidence 455555555555543322 2 5555555555544332 233 4555555555542 34444444345555555
Q ss_pred EEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhc---cCCCCCCEeec
Q 003421 181 SLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDL---SKHQHLQMIDL 254 (821)
Q Consensus 181 ~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~~L~l 254 (821)
+|++++|.++.++. +..+++|++|++++|.+....+. +..+++|+.|++++|. ++.++...+ ..+++|+.|++
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEEC
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEEC
Confidence 55555555555443 55555555555555544333333 4555555555555554 444553333 34566666666
Q ss_pred cCcCCcCCC
Q 003421 255 SRTQIKRLP 263 (821)
Q Consensus 255 ~~~~l~~l~ 263 (821)
++|.++.++
T Consensus 171 ~~N~l~~l~ 179 (361)
T 2xot_A 171 SSNKLKKLP 179 (361)
T ss_dssp CSSCCCCCC
T ss_pred CCCCCCccC
Confidence 666666554
No 112
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=4.1e-15 Score=161.30 Aligned_cols=227 Identities=14% Similarity=0.067 Sum_probs=153.9
Q ss_pred CCceeEEEecCCCccccccHH---HHhcCcCCcEEEeecCCCC----cccccc-------cccccCCCCCCCccEEEcCC
Q 003421 73 WDEVSTLLIDGDRLRLEVDEG---FLARMKQLHALAIFNSGFK----SLDLSS-------KTEKKSEPEKLPMKLLVLRS 138 (821)
Q Consensus 73 ~~~l~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~l~~~~~~----~l~~~~-------~~l~~~~~~~~~L~~L~l~~ 138 (821)
+++|++|++++|.+....+.. .+..+++|++|++++|.+. .+|..+ ..+++ |++|++++
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~-------L~~L~Ls~ 103 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK-------LHTVRLSD 103 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT-------CCEEECCS
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc-------ccEEECCC
Confidence 467888888888876433222 2557888888888887653 334444 45555 88888888
Q ss_pred CCCCCC-----cccccCCCCccEEeccCCcCCCcCc-hHh---hhCC---------CCccEEEecCCCCC--cCc---C-
Q 003421 139 CNLLNG-----IGDIELLKKLTVLEISGANSVQKIP-DKL---LDEM---------TKLQSLNLSGCQMK--FLP---S- 194 (821)
Q Consensus 139 ~~~~~~-----~~~i~~l~~L~~L~l~~~~~~~~lp-~~~---~~~l---------~~L~~L~l~~~~i~--~lp---~- 194 (821)
|.+... +..+..+++|++|++++|.. +..+ ..+ +..+ ++|++|++++|.++ .++ .
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 887762 24567888888888888643 3222 111 2333 88888888888886 344 3
Q ss_pred cCCCCcccEEEccCCCCCC-----CCc-ccccCCcccEEeecCCCCC-----CccChhhccCCCCCCEeeccCcCCcCC-
Q 003421 195 LSKLFNLRFLILRDCSSLQ-----KLP-RINELVRLEIIDLSGATSL-----TFFPEQDLSKHQHLQMIDLSRTQIKRL- 262 (821)
Q Consensus 195 l~~l~~L~~L~l~~~~~~~-----~l~-~l~~l~~L~~L~l~~~~~~-----~~~~~~~l~~l~~L~~L~l~~~~l~~l- 262 (821)
+..+++|++|++++|.+.. ..+ .+..+++|+.|++++|. + ..++ ..+..+++|++|++++|.++..
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~-~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALA-IALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHH-HHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHH-HHHccCCCcCEEECCCCCCchhh
Confidence 6678888888888886542 244 46788888888888887 4 3344 4677888888888888888753
Q ss_pred ----CC-c--CCCCCCceEeecCccccc----cccccccCCCCCCCCC-CCCCCCcEEEecCCCCCCCC
Q 003421 263 ----PK-F--GYLKRLSRISIEGCKRFH----NFHEIKPRDSNTKSKP-LFPVSLSELHLRDCPTLKRL 319 (821)
Q Consensus 263 ----~~-~--~~l~~L~~L~l~~~~~l~----~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~ 319 (821)
+. + +.+++|++|++++|..-. .++.. + ..+++|++|++++|......
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~----------l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV----------IDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH----------HHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH----------HHhcCCCceEEEccCCcCCcch
Confidence 22 3 447888888888875333 12211 1 34678899999888765444
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=1e-12 Score=129.78 Aligned_cols=146 Identities=12% Similarity=0.163 Sum_probs=119.2
Q ss_pred ccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcC-chHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEcc
Q 003421 131 MKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKI-PDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILR 207 (821)
Q Consensus 131 L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~l-p~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~ 207 (821)
-++++++++.+...+..+ ...+++|++++|. +..+ |..+|+.+++|++|++++|.++.++. +..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcccCccCC--CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 468999999988766555 3457899999864 5555 55667899999999999999998875 9999999999999
Q ss_pred CCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCC--cCCCCCCceEeecCcc
Q 003421 208 DCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK--FGYLKRLSRISIEGCK 280 (821)
Q Consensus 208 ~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~ 280 (821)
+|.+....+. +..+++|+.|++++|. ++.+++..+..+++|++|++++|.++.++. +..+++|+.|++++|.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 9987766665 7899999999999987 666766788999999999999999998743 6777777777777664
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=1.2e-12 Score=129.38 Aligned_cols=146 Identities=16% Similarity=0.289 Sum_probs=119.7
Q ss_pred ccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcC-cC-cCCCCcccEEEccC
Q 003421 131 MKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFL-PS-LSKLFNLRFLILRD 208 (821)
Q Consensus 131 L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~l-p~-l~~l~~L~~L~l~~ 208 (821)
-+.++++++.+...+..+. ++|++|++++| .+..++...|..+++|++|++++|.++.+ |. |..+++|++|++++
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 4678888888887766554 78999999984 67778876678999999999999999987 55 99999999999999
Q ss_pred CCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCC--cCCCCCCceEeecCcc
Q 003421 209 CSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK--FGYLKRLSRISIEGCK 280 (821)
Q Consensus 209 ~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~ 280 (821)
|.+....+. +..+++|+.|++++|. ++.+++..+..+++|++|++++|.++.++. +..+++|+.|++++|.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 986644334 6889999999999987 777766789999999999999999998765 6677777777777664
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=1.8e-13 Score=146.48 Aligned_cols=171 Identities=18% Similarity=0.221 Sum_probs=124.5
Q ss_pred eEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCccccc-cc-ccccCCCCCCCccEEEcCCCCCCCCc-ccccCCCC
Q 003421 77 STLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLS-SK-TEKKSEPEKLPMKLLVLRSCNLLNGI-GDIELLKK 153 (821)
Q Consensus 77 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~-~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~l~~ 153 (821)
+.++++++.+. .+|..+ .+.+++|++++|.++.++.. +. .+.+ |++|++++|.+...+ ..+..+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~-------L~~L~L~~N~i~~i~~~~~~~l~~ 89 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTN-------LHSLLLSHNHLNFISSEAFVPVPN 89 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTT-------CCEEECCSSCCCEECTTTTTTCTT
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccc-------cCEEECCCCcCCccChhhccCCCC
Confidence 46777777775 566432 24578888888888776654 33 6666 888888888887665 35788888
Q ss_pred ccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCc-C-cCCCCcccEEEccCCCCCCCCcc-c---ccCCcccEE
Q 003421 154 LTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLP-S-LSKLFNLRFLILRDCSSLQKLPR-I---NELVRLEII 227 (821)
Q Consensus 154 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp-~-l~~l~~L~~L~l~~~~~~~~l~~-l---~~l~~L~~L 227 (821)
|++|++++| .+..++...|..+++|++|++++|.++.++ . +..+++|++|++++|.+...-+. + ..+++|+.|
T Consensus 90 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 90 LRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp CCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred CCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence 888888874 566777766788888888888888888764 3 88888888888888875543222 2 568888888
Q ss_pred eecCCCCCCccChhhccCCCC--CCEeeccCcCCc
Q 003421 228 DLSGATSLTFFPEQDLSKHQH--LQMIDLSRTQIK 260 (821)
Q Consensus 228 ~l~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~l~ 260 (821)
++++|. ++.++...+..++. ++.|++.+|.+.
T Consensus 169 ~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 169 DLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ECCSSC-CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ECCCCC-CCccCHHHhhhccHhhcceEEecCCCcc
Confidence 888876 77777677777776 478888888776
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=1.9e-12 Score=128.80 Aligned_cols=145 Identities=22% Similarity=0.293 Sum_probs=115.7
Q ss_pred ccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccC
Q 003421 131 MKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRD 208 (821)
Q Consensus 131 L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~ 208 (821)
-+.++.+++.+...+..+. ++|++|++++| .+..+++..|..+++|++|++++|.++.+|. +..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 5778888888877665553 88999999985 4555655556899999999999999998886 78999999999999
Q ss_pred CCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCC--cCCCCCCceEeecCcc
Q 003421 209 CSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK--FGYLKRLSRISIEGCK 280 (821)
Q Consensus 209 ~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~ 280 (821)
|.+....+. +..+++|+.|++++|. ++.+| ..+..+++|++|++++|.++.++. +..+++|+.|++.+|.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNK-LTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccChhHhCcchhhCeEeccCCc-ccccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 876655444 6889999999999887 77787 567889999999999999988764 6667777777776654
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=1.5e-12 Score=122.67 Aligned_cols=126 Identities=22% Similarity=0.235 Sum_probs=87.3
Q ss_pred CcCCcEEEeecCCCC--cccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhC
Q 003421 98 MKQLHALAIFNSGFK--SLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDE 175 (821)
Q Consensus 98 l~~L~~L~l~~~~~~--~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~ 175 (821)
.++|++|++++|.+. .+|..+..+++ |++|++++|.+... ..+..+++|++|++++|.....+|.. +.+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~-------L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVN-------LEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML-AEK 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGG-------CCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHH-HHH
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCC-------CCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHH-Hhh
Confidence 477888888888886 78877778877 88888888887765 67778888888888876544335543 467
Q ss_pred CCCccEEEecCCCCCcCc--C-cCCCCcccEEEccCCCCCCCCc----ccccCCcccEEeecCC
Q 003421 176 MTKLQSLNLSGCQMKFLP--S-LSKLFNLRFLILRDCSSLQKLP----RINELVRLEIIDLSGA 232 (821)
Q Consensus 176 l~~L~~L~l~~~~i~~lp--~-l~~l~~L~~L~l~~~~~~~~l~----~l~~l~~L~~L~l~~~ 232 (821)
+++|++|++++|.++.+| . +..+++|++|++++|.+....+ .+..+++|+.|++++|
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 888888888888888765 3 7777777777777765443322 1344444444444444
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.38 E-value=4.1e-12 Score=134.16 Aligned_cols=277 Identities=14% Similarity=0.160 Sum_probs=148.0
Q ss_pred CCceeEEEecCCCccccccHHHHhc-CcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccC-
Q 003421 73 WDEVSTLLIDGDRLRLEVDEGFLAR-MKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIEL- 150 (821)
Q Consensus 73 ~~~l~~L~l~~n~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~- 150 (821)
+.+++.|.+.++- . ......+.. +++|++|||++|.+......-+.+.. ++.+.+..+.+. ...|.+
T Consensus 24 ~~~l~~L~l~g~i-~-~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~-------~~~~~~~~~~I~--~~aF~~~ 92 (329)
T 3sb4_A 24 ANSITHLTLTGKL-N-AEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPN-------GKFYIYMANFVP--AYAFSNV 92 (329)
T ss_dssp HHHCSEEEEEEEE-C-HHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGG-------GCCEEECTTEEC--TTTTEEE
T ss_pred hCceeEEEEeccc-c-HHHHHHHHHhhccCeEEecCcceeEEecCccccccc-------cccccccccccC--HHHhccc
Confidence 3577888887652 2 122233444 78899999999998622222222222 455555545332 145666
Q ss_pred -------CCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCC---CCCCcc-
Q 003421 151 -------LKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSS---LQKLPR- 217 (821)
Q Consensus 151 -------l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~---~~~l~~- 217 (821)
+++|+.|++.+ .+..++...|.+|++|+.+++.+|.+..++. |..+.++..+....... ...+..
T Consensus 93 ~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 93 VNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp ETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred ccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence 99999999986 6788888888999999999999999888876 88877777776654211 111111
Q ss_pred -cccCCccc-EEeecCCCCCCccChhhcc---CCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCC
Q 003421 218 -INELVRLE-IIDLSGATSLTFFPEQDLS---KHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRD 292 (821)
Q Consensus 218 -l~~l~~L~-~L~l~~~~~~~~~~~~~l~---~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 292 (821)
+..+..|+ .+.+.... .++...+. ...+++.+.+.++-.. .....+
T Consensus 171 ~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~----------------------~~~~~l---- 221 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN----------------------ADFKLI---- 221 (329)
T ss_dssp CEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH----------------------HHHHHH----
T ss_pred ccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH----------------------HHHHHH----
Confidence 33444444 33333221 11111110 1122222222211000 000000
Q ss_pred CCCCCCCCCCCCCcEEEecCCCCCCCCC--CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCc-EEEecCCCCCCCCC
Q 003421 293 SNTKSKPLFPVSLSELHLRDCPTLKRLP--HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLR-ELNLSNTKLKSLPP 369 (821)
Q Consensus 293 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~l~~l~~ 369 (821)
...+++|+++++.++. +..++ .+.++.+|+.+++.++ +. .+...+|.++++|+ .+.+.+ .++.++.
T Consensus 222 ------~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~--~I~~~aF~~~~~L~~~l~l~~-~l~~I~~ 290 (329)
T 3sb4_A 222 ------RDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LK--TIGQRVFSNCGRLAGTLELPA-SVTAIEF 290 (329)
T ss_dssp ------HHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEEEECT-TCCEECT
T ss_pred ------HHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cc--eehHHHhhCChhccEEEEEcc-cceEEch
Confidence 0013445555555442 22332 4555666666666554 22 24455566666666 666665 5555554
Q ss_pred --ccccccccEEEeecCCCcCcCCC--CCCCCCcCEEe
Q 003421 370 --LSNLHRLRKLFLKNCELLEELPK--MNGLENLEVLD 403 (821)
Q Consensus 370 --~~~l~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~ 403 (821)
+.++++|+.+++.++. ++.++. |.++++|+.++
T Consensus 291 ~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred hhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 6666666666665554 333332 66666666664
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.38 E-value=1.1e-14 Score=164.58 Aligned_cols=105 Identities=21% Similarity=0.273 Sum_probs=52.2
Q ss_pred ccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCcccccCCcccEEeecCC
Q 003421 154 LTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDLSGA 232 (821)
Q Consensus 154 L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~ 232 (821)
|++|++++| .+..+|. ++.+++|++|++++|.++.+|. ++.+++|++|++++|.+.. +|.++.+++|+.|++++|
T Consensus 443 L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTS-CCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSS
T ss_pred ceEEEecCC-CCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCC
Confidence 555555543 3344443 3455555555555555555554 5555555555555554333 444555555555555554
Q ss_pred CCCCccC-hhhccCCCCCCEeeccCcCCcCCC
Q 003421 233 TSLTFFP-EQDLSKHQHLQMIDLSRTQIKRLP 263 (821)
Q Consensus 233 ~~~~~~~-~~~l~~l~~L~~L~l~~~~l~~l~ 263 (821)
. ++.++ +..++.+++|+.|++++|.++.+|
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred C-CCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 4 33332 244555555555555555555443
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.32 E-value=2.5e-14 Score=161.52 Aligned_cols=173 Identities=17% Similarity=0.190 Sum_probs=127.2
Q ss_pred hcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCC-------------CCCCc-ccccCCCCccEEe-cc
Q 003421 96 ARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCN-------------LLNGI-GDIELLKKLTVLE-IS 160 (821)
Q Consensus 96 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~-------------~~~~~-~~i~~l~~L~~L~-l~ 160 (821)
..+++|+.|++++|.++.+|..++++.+ |+.|+++.|. ..+.+ ..++.+++|+.|+ ++
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~-------L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKE-------LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHH-------HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHH-------HHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh
Confidence 4578899999999999999999999999 9999986553 22222 3567788888887 44
Q ss_pred CCcCCCcCchHhh-----hC--CCCccEEEecCCCCCcCcCcCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCC
Q 003421 161 GANSVQKIPDKLL-----DE--MTKLQSLNLSGCQMKFLPSLSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGA 232 (821)
Q Consensus 161 ~~~~~~~lp~~~~-----~~--l~~L~~L~l~~~~i~~lp~l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~ 232 (821)
. +.+..++...+ .. ...|++|++++|.++.+|.++.+++|++|++++|.+. .+|. ++.+++|+.|++++|
T Consensus 419 ~-n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 419 A-AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred h-cccchhhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCC
Confidence 3 22223322110 11 1358889999998888888888888999999888766 6665 788888888888887
Q ss_pred CCCCccChhhccCCCCCCEeeccCcCCcCC--CC-cCCCCCCceEeecCcc
Q 003421 233 TSLTFFPEQDLSKHQHLQMIDLSRTQIKRL--PK-FGYLKRLSRISIEGCK 280 (821)
Q Consensus 233 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l--~~-~~~l~~L~~L~l~~~~ 280 (821)
. ++.+| .++.+++|++|++++|.++.+ |. ++.+++|+.|++++|.
T Consensus 497 ~-l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 497 A-LENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp C-CCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred C-CCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 6 66665 688888888888888888876 43 6677777777777654
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=4.4e-12 Score=119.51 Aligned_cols=130 Identities=22% Similarity=0.211 Sum_probs=90.7
Q ss_pred ccEEEcCCCCCC--CCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCc-CcC-cCCCCcccEEEc
Q 003421 131 MKLLVLRSCNLL--NGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKF-LPS-LSKLFNLRFLIL 206 (821)
Q Consensus 131 L~~L~l~~~~~~--~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~-lp~-l~~l~~L~~L~l 206 (821)
|++|++++|.+. ..+..+..+++|++|++++|. +..+ ..+..+++|++|++++|.++. +|. +..+++|++|++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 888888888876 444556778888888888754 4555 234778888888888888777 555 666788888888
Q ss_pred cCCCCCCCC--cccccCCcccEEeecCCCCCCccCh---hhccCCCCCCEeeccCcCCcCCCC
Q 003421 207 RDCSSLQKL--PRINELVRLEIIDLSGATSLTFFPE---QDLSKHQHLQMIDLSRTQIKRLPK 264 (821)
Q Consensus 207 ~~~~~~~~l--~~l~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~l~~l~~ 264 (821)
++|.+...- +.+..+++|+.|++++|. ++.++. ..+..+++|++|++++|.+..+|.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 887654422 336777777777777776 555553 367777777777777777766553
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=3.4e-12 Score=117.58 Aligned_cols=124 Identities=25% Similarity=0.250 Sum_probs=82.6
Q ss_pred CcCCcEEEeecCCCC--cccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhC
Q 003421 98 MKQLHALAIFNSGFK--SLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDE 175 (821)
Q Consensus 98 l~~L~~L~l~~~~~~--~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~ 175 (821)
.++|+.|++++|.+. .+|..+..+++ |++|++++|.+.+. ..++.+++|++|++++|.....+|.. +..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~-------L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~ 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEE-------LEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL-AEK 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTT-------CCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH-HHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCC-------CcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH-hhh
Confidence 466777777777775 67776677777 88888888777665 66777778888888775433335543 466
Q ss_pred CCCccEEEecCCCCCcCc--C-cCCCCcccEEEccCCCCCCCCc----ccccCCcccEEeec
Q 003421 176 MTKLQSLNLSGCQMKFLP--S-LSKLFNLRFLILRDCSSLQKLP----RINELVRLEIIDLS 230 (821)
Q Consensus 176 l~~L~~L~l~~~~i~~lp--~-l~~l~~L~~L~l~~~~~~~~l~----~l~~l~~L~~L~l~ 230 (821)
+++|++|++++|.++.+| . ++.+++|++|++++|.+....+ .+..+++|+.|+++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 778888888888777754 4 6777777777777765443322 14555555555543
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=1.4e-11 Score=118.74 Aligned_cols=122 Identities=19% Similarity=0.215 Sum_probs=65.4
Q ss_pred cEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcc--cccCCCCccEEeccCCcCCCcCchHhhhCCCCc
Q 003421 102 HALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIG--DIELLKKLTVLEISGANSVQKIPDKLLDEMTKL 179 (821)
Q Consensus 102 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L 179 (821)
+++++++++++.+|..+.. . +++|++++|.+.+.++ .++.+++|++|++++| .+..+++..|..+++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~-------l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--H-------TTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHI 80 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--T-------CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTC
T ss_pred CEEEcCCCCcCcCccCCCC--C-------CCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccC
Confidence 4566666666666654433 3 6666666666555443 2556666666666653 3333333333566666
Q ss_pred cEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCC
Q 003421 180 QSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGAT 233 (821)
Q Consensus 180 ~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~ 233 (821)
++|++++|.++.++. +..+++|++|++++|.+....|. +..+++|+.|++++|.
T Consensus 81 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 666666666665443 55556666666655554443333 4444555555555444
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=1.5e-12 Score=152.00 Aligned_cols=114 Identities=20% Similarity=0.206 Sum_probs=52.9
Q ss_pred HHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhh
Q 003421 94 FLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLL 173 (821)
Q Consensus 94 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~ 173 (821)
.|..++.|++|+|++|.+..+|..+..+.+ |++|+|++|.+...+..|+.+++|++|+|++|. +..+|..+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~-------L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~- 289 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDF-------LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAEL- 289 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCS-------CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSG-
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCC-------CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhh-
Confidence 344445555555555555444444444444 555555555444333344445555555555432 33444443
Q ss_pred hCCCCccEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCc
Q 003421 174 DEMTKLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLP 216 (821)
Q Consensus 174 ~~l~~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~ 216 (821)
+++++|++|++++|.++.+|. |+.+++|++|++++|.+.+.+|
T Consensus 290 ~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp GGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred cCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 444555555555555444444 4455555555555544444333
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=5.7e-12 Score=119.68 Aligned_cols=104 Identities=14% Similarity=0.184 Sum_probs=59.7
Q ss_pred cCcCCcEEEeecCCCCcccccccccc-cCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhC
Q 003421 97 RMKQLHALAIFNSGFKSLDLSSKTEK-KSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDE 175 (821)
Q Consensus 97 ~l~~L~~L~l~~~~~~~l~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~ 175 (821)
++.+|++|++++|.+..+|. +..+. + |++|++++|.+.+. +.+..+++|++|++++| .+..+|+.+|..
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~-------L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 86 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQ-------FDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQA 86 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTC-------CSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHH
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCC-------CCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhc
Confidence 45566666666666655543 33332 4 66666666666543 45566666666666653 345555555566
Q ss_pred CCCccEEEecCCCCCcCcC---cCCCCcccEEEccCCC
Q 003421 176 MTKLQSLNLSGCQMKFLPS---LSKLFNLRFLILRDCS 210 (821)
Q Consensus 176 l~~L~~L~l~~~~i~~lp~---l~~l~~L~~L~l~~~~ 210 (821)
+++|++|++++|.++.+|. +..+++|++|++++|.
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC
Confidence 6666666666666665553 4455555555555554
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=1.7e-11 Score=118.13 Aligned_cols=122 Identities=17% Similarity=0.256 Sum_probs=74.2
Q ss_pred EEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCc-ccccCCCCccE
Q 003421 78 TLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIELLKKLTV 156 (821)
Q Consensus 78 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~l~~L~~ 156 (821)
.++++++.+. .++.++ .++|++|++++|.+..+|..+..+.+ |++|++++|.+.... ..|.++++|++
T Consensus 14 ~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~-------L~~L~Ls~N~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFTLVPKELSNYKH-------LTLIDLSNNRISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp EEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTT-------CCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCchhHHHhhcccC-------CCEEECCCCcCCEeCHhHccCCCCCCE
Confidence 4556666654 455332 24566666666666666666666666 666666666666554 24666666666
Q ss_pred EeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCC
Q 003421 157 LEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSS 211 (821)
Q Consensus 157 L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~ 211 (821)
|++++| .+..+++..|..+++|++|++++|.++.+|. +..+++|++|++++|.+
T Consensus 83 L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 83 LILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp EECCSS-CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCC-ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 666663 4555555545666666666666666666654 55666666666666544
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=4e-11 Score=115.47 Aligned_cols=121 Identities=21% Similarity=0.287 Sum_probs=68.8
Q ss_pred cEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccE
Q 003421 102 HALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQS 181 (821)
Q Consensus 102 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~ 181 (821)
+++++++++++.+|..+. .. |++|++++|.+...+..+..+++|++|++++| .+..++...|..+++|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~-------l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RD-------VTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TT-------CCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CEEEcCCCCCCcCCCCCC--CC-------CCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCE
Confidence 466777777766665443 23 67777776666655555666666666666653 445555554566666666
Q ss_pred EEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCC
Q 003421 182 LNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGA 232 (821)
Q Consensus 182 L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~ 232 (821)
|++++|.++.++. +..+++|++|++++|.+....+. +..+++|+.|++++|
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 6666666666554 55566666666665543322221 334444444444443
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=9.9e-12 Score=114.45 Aligned_cols=120 Identities=23% Similarity=0.207 Sum_probs=60.5
Q ss_pred ccEEEcCCCCCC--CCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCc-CcC-cCCCCcccEEEc
Q 003421 131 MKLLVLRSCNLL--NGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKF-LPS-LSKLFNLRFLIL 206 (821)
Q Consensus 131 L~~L~l~~~~~~--~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~-lp~-l~~l~~L~~L~l 206 (821)
|++|++++|.+. ..+..+..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|. +..+++|++|++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 666666666655 23334455666666666654 33333 223555566666666665555 444 444555555555
Q ss_pred cCCCCCCC-C-cccccCCcccEEeecCCCCCCccCh---hhccCCCCCCEeec
Q 003421 207 RDCSSLQK-L-PRINELVRLEIIDLSGATSLTFFPE---QDLSKHQHLQMIDL 254 (821)
Q Consensus 207 ~~~~~~~~-l-~~l~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l 254 (821)
++|.+... . ..+..+++|+.|++++|. ++.++. ..++.+++|++|++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 55543331 1 224555555555555543 333332 23444555555544
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=5.7e-11 Score=114.42 Aligned_cols=127 Identities=16% Similarity=0.178 Sum_probs=103.0
Q ss_pred ccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCch-HhhhCCCCccEEEecCCCCCcC-cC-cCCCCcccEEEcc
Q 003421 131 MKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPD-KLLDEMTKLQSLNLSGCQMKFL-PS-LSKLFNLRFLILR 207 (821)
Q Consensus 131 L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~i~~l-p~-l~~l~~L~~L~l~ 207 (821)
-++++++++.+...+..+.. +|++|++++| .+..++. .+|+.+++|++|++++|.++.+ |. +..+++|++|+++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 47899999988776665543 8999999985 5566665 3568999999999999999987 45 9999999999999
Q ss_pred CCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcC
Q 003421 208 DCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKR 261 (821)
Q Consensus 208 ~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 261 (821)
+|.+....+. +..+++|+.|++++|. ++.+++..+..+++|++|++++|.+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 9987666555 7889999999999887 665555788889999999999988874
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=2.2e-11 Score=128.48 Aligned_cols=190 Identities=17% Similarity=0.214 Sum_probs=116.3
Q ss_pred CCceeEEEecCCCccc-------------------cccHHHHhc--------CcCCcEEEeecCCCCcccc-cccccccC
Q 003421 73 WDEVSTLLIDGDRLRL-------------------EVDEGFLAR--------MKQLHALAIFNSGFKSLDL-SSKTEKKS 124 (821)
Q Consensus 73 ~~~l~~L~l~~n~~~~-------------------~~~~~~~~~--------l~~L~~L~l~~~~~~~l~~-~~~~l~~~ 124 (821)
+++|+.|+|++|.+.. .++..+|.+ +++|+.+++.. .+..++. +|..|.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~- 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN- 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT-
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcc-
Confidence 5678888888887650 355666777 88888888877 6766653 5677777
Q ss_pred CCCCCCccEEEcCCCCCCCCc-ccccCCCCccEEeccCCc---C-----------------------CCcCchHhh----
Q 003421 125 EPEKLPMKLLVLRSCNLLNGI-GDIELLKKLTVLEISGAN---S-----------------------VQKIPDKLL---- 173 (821)
Q Consensus 125 ~~~~~~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~l~~~~---~-----------------------~~~lp~~~~---- 173 (821)
|+.+++++|.+.... ..|..+.++.++...... . .+.++..++
T Consensus 126 ------L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~ 199 (329)
T 3sb4_A 126 ------LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL 199 (329)
T ss_dssp ------CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred ------cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence 888888777665433 345556666655543310 0 011111111
Q ss_pred -----------------------hCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc--cccCCccc-
Q 003421 174 -----------------------DEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR--INELVRLE- 225 (821)
Q Consensus 174 -----------------------~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~- 225 (821)
..+++|+.+++++|+++.+|. |..+++|+.+++.++ ...++. +.++.+|+
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCE
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccE
Confidence 126677777777777777666 677777777777665 344443 56667776
Q ss_pred EEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCC--cCCCCCCceE
Q 003421 226 IIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK--FGYLKRLSRI 274 (821)
Q Consensus 226 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L 274 (821)
.+++.. .++.++...|.++++|+.+++..+.++.++. +..+++|+.+
T Consensus 278 ~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 278 TLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred EEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 777765 2566665666677777777776666666554 4455555444
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.20 E-value=1.6e-10 Score=109.68 Aligned_cols=100 Identities=27% Similarity=0.322 Sum_probs=53.2
Q ss_pred CcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcc-cccCCCCccEEeccCCcCCCcCchHhhhCCCCc
Q 003421 101 LHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIELLKKLTVLEISGANSVQKIPDKLLDEMTKL 179 (821)
Q Consensus 101 L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L 179 (821)
.+.++++++++..+|..+. .. |++|++++|.+.+.++ .++.+++|++|++++| .+..+|...|+.+++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~-------l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 78 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SS-------ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKL 78 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TT-------CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCEEEecCCCCccCCCCCC--CC-------CcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCcc
Confidence 3556666666655554332 23 6666666665554443 2455555555555553 3445554444555555
Q ss_pred cEEEecCCCCCcCcC--cCCCCcccEEEccCCC
Q 003421 180 QSLNLSGCQMKFLPS--LSKLFNLRFLILRDCS 210 (821)
Q Consensus 180 ~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~ 210 (821)
++|++++|.++.+|. +..+++|++|++++|.
T Consensus 79 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 111 (177)
T 2o6r_A 79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQ 111 (177)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCCccccCHHHhhCCcccCEEECcCCc
Confidence 555555555555544 4455555555555544
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=5.3e-12 Score=147.24 Aligned_cols=100 Identities=25% Similarity=0.433 Sum_probs=48.8
Q ss_pred ccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC-cCCCCcccEEEccCC
Q 003421 131 MKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDC 209 (821)
Q Consensus 131 L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~ 209 (821)
|++|++++|.+...+..+..+++|++|+|++| .+..+|..+ +++++|++|+|++|.++.+|. ++.+++|++|++++|
T Consensus 226 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 226 WHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN 303 (727)
T ss_dssp CCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS
T ss_pred CcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhh-hCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC
Confidence 55555555555444444445555555555543 233455443 455555555555555555554 555555555555554
Q ss_pred CCCCCCcc-cccCCcccEEeecCCC
Q 003421 210 SSLQKLPR-INELVRLEIIDLSGAT 233 (821)
Q Consensus 210 ~~~~~l~~-l~~l~~L~~L~l~~~~ 233 (821)
.+. .+|. +..+++|+.|++++|.
T Consensus 304 ~l~-~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 304 MVT-TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CCC-CCCSSTTSCTTCCCEECTTSC
T ss_pred CCC-ccChhhhcCCCccEEeCCCCc
Confidence 432 3333 4444444444444444
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=1.7e-10 Score=109.62 Aligned_cols=124 Identities=21% Similarity=0.276 Sum_probs=59.8
Q ss_pred EEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccc-cccccccCCCCCCCccEEEcCCCCCCCCcc-cccCCCCcc
Q 003421 78 TLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDL-SSKTEKKSEPEKLPMKLLVLRSCNLLNGIG-DIELLKKLT 155 (821)
Q Consensus 78 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~i~~l~~L~ 155 (821)
.++++++.+. .++..+ .++|++|++++|.+..++. .+..+.+ |++|++++|.+...++ .+..+++|+
T Consensus 11 ~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~-------L~~L~l~~n~l~~~~~~~~~~l~~L~ 79 (177)
T 2o6r_A 11 EIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQ-------LTKLSLSQNQIQSLPDGVFDKLTKLT 79 (177)
T ss_dssp EEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTT-------CSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCccc-------ccEEECCCCcceEeChhHccCCCccC
Confidence 4445555443 333221 2455555555555544443 2344444 5555555555544432 234555555
Q ss_pred EEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCC
Q 003421 156 VLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQ 213 (821)
Q Consensus 156 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~ 213 (821)
+|++++| .+..+|...+..+++|++|++++|.++.+|. +..+++|++|++++|.+..
T Consensus 80 ~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 80 ILYLHEN-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECCCC-CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 5555542 3344444444555555555555555555544 3445555555555554433
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.17 E-value=1e-09 Score=118.91 Aligned_cols=303 Identities=11% Similarity=0.095 Sum_probs=164.4
Q ss_pred cccHHHHhcCcCCcEEEeecCCCCccc-ccccccccCCCCCCCccEEEcCCCCCCCCc-ccccCCCCccEEeccCCcCCC
Q 003421 89 EVDEGFLARMKQLHALAIFNSGFKSLD-LSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIELLKKLTVLEISGANSVQ 166 (821)
Q Consensus 89 ~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~ 166 (821)
.|...+|.++.+|+.+.+.. .++.+. .+|.+|.+ |+.+++..+ +.... ..+.++.+|+.+.+.. .+.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~-------L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~--~l~ 129 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSK-------LEIINIPDS-VKMIGRCTFSGCYALKSILLPL--MLK 129 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTT-------CCEECCCTT-CCEECTTTTTTCTTCCCCCCCT--TCC
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCC-------CcEEEeCCC-ceEccchhhcccccchhhcccC--cee
Confidence 45555566666666666642 344443 34555555 666666433 22211 3455666666655543 344
Q ss_pred cCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc--cccCCcccEEeecCCCCCCccChhh
Q 003421 167 KIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR--INELVRLEIIDLSGATSLTFFPEQD 242 (821)
Q Consensus 167 ~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~ 242 (821)
.++...|.++..++..... .+..+.. |..+++|+.+.+.++. ..++. +.++.+|+.+.+..+ ++.+....
T Consensus 130 ~i~~~aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~ 203 (394)
T 4fs7_A 130 SIGVEAFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYC 203 (394)
T ss_dssp EECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT--CCEECTTT
T ss_pred eecceeeecccccccccCc--cccccchhhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC--ceEeCchh
Confidence 5555555555433332222 1222322 6666666666665431 22222 455666666666543 45555455
Q ss_pred ccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCC
Q 003421 243 LSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLPHI 322 (821)
Q Consensus 243 l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 322 (821)
+.++..|+.+.+..+....-........|+.+.+.... ..+. ...+..+..++.+.+..+...-....+
T Consensus 204 F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~--~~i~---------~~~f~~~~~l~~~~~~~~~~~i~~~~F 272 (394)
T 4fs7_A 204 FAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSF--TELG---------KSVFYGCTDLESISIQNNKLRIGGSLF 272 (394)
T ss_dssp TTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTC--CEEC---------SSTTTTCSSCCEEEECCTTCEECSCTT
T ss_pred hccccccceeecCCCceEeehhhcccCCCceEEECCCc--eecc---------cccccccccceeEEcCCCcceeecccc
Confidence 66666666666554432211112233455555543211 1100 111445666777776654222122256
Q ss_pred CCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--ccccccccEEEeecCCCcCcCCC--CCCCCC
Q 003421 323 AGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLKNCELLEELPK--MNGLEN 398 (821)
Q Consensus 323 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~~~~l~~--~~~l~~ 398 (821)
..+..++.+...... .....+..+.+|+.+.+..+ ++.++. +.++.+|+.+++.++ ++.+.. +.+|.+
T Consensus 273 ~~~~~l~~~~~~~~~-----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~ 344 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVI-----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTS 344 (394)
T ss_dssp TTCTTCCEEEECSSE-----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTT
T ss_pred ccccccceeccCcee-----eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCC
Confidence 667777777665432 33445667778888887654 555555 777888888888653 455543 777888
Q ss_pred cCEEeccCCCCCCcCCC--CCCCCCCCEEEeeC
Q 003421 399 LEVLDLSGCSKLVEFPK--LKDFPKLELLDISN 429 (821)
Q Consensus 399 L~~L~l~~c~~l~~i~~--l~~l~~L~~L~l~~ 429 (821)
|+.+++..+ +..++. |.++++|+.+++..
T Consensus 345 L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 345 LSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 888888653 556655 78888888888764
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=1.8e-11 Score=116.15 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=106.8
Q ss_pred CCCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccc-c
Q 003421 71 KKWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDI-E 149 (821)
Q Consensus 71 ~~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i-~ 149 (821)
.++.+++.|++++|.+. .++. +....++|++|++++|.+..+ ..+..+.+ |++|++++|.+...++.+ .
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~-------L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRR-------LKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSS-------CCEEECCSSCCCEECSCHHH
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCC-------CCEEECCCCcccccCcchhh
Confidence 35679999999999987 5543 333344999999999999887 57788888 999999999998766554 8
Q ss_pred CCCCccEEeccCCcCCCcCch-HhhhCCCCccEEEecCCCCCcCcC-----cCCCCcccEEEccCCCC
Q 003421 150 LLKKLTVLEISGANSVQKIPD-KLLDEMTKLQSLNLSGCQMKFLPS-----LSKLFNLRFLILRDCSS 211 (821)
Q Consensus 150 ~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~i~~lp~-----l~~l~~L~~L~l~~~~~ 211 (821)
.+++|++|++++| .++.+|. ..++.+++|++|++++|.++.+|. +..+++|++|++++|..
T Consensus 86 ~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 86 ALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred cCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 9999999999985 5678886 345899999999999999998876 67888888888887753
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.16 E-value=2.3e-09 Score=115.42 Aligned_cols=251 Identities=12% Similarity=0.178 Sum_probs=129.6
Q ss_pred ccEEEcCCCCCCCCc-ccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEcc
Q 003421 131 MKLLVLRSCNLLNGI-GDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILR 207 (821)
Q Consensus 131 L~~L~l~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~ 207 (821)
++.+.+... +.... .+|.++ +|+.+.+.. .+..++...|.++ +|+.+.+.. .++.++. |..+++|+.+++.
T Consensus 115 l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~--~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 115 YNEIILPNS-VKSIPKDAFRNS-QIAKVVLNE--GLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCSEEECCT--TCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred ccEEEECCc-cCEehHhhcccC-CccEEEeCC--CccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 666666432 32222 345554 577777654 3666666666664 577777664 5555554 6666677777666
Q ss_pred CCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCcccccccc
Q 003421 208 DCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFH 286 (821)
Q Consensus 208 ~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~ 286 (821)
++... .++. .....+|+.+.+..+ ++.++...|.++++|+.+++..+ ++.++.
T Consensus 189 ~n~l~-~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~---------------------- 242 (401)
T 4fdw_A 189 KTKIT-KLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ---------------------- 242 (401)
T ss_dssp TSCCS-EECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECT----------------------
T ss_pred CCcce-EechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCccc----------------------
Confidence 55422 2222 222355666665532 45555455555555655555442 222221
Q ss_pred ccccCCCCCCCCCCCCCCCcEEEecCCCCCCCCC--CCCCCCCcCEEEecCCCCCC---cccChhhhcCCCCCcEEEecC
Q 003421 287 EIKPRDSNTKSKPLFPVSLSELHLRDCPTLKRLP--HIAGLKNLEVLDVSGTSDSK---FAISDESFHDLDYLRELNLSN 361 (821)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~---~~~~~~~~~~l~~L~~L~l~~ 361 (821)
. .+.. .+|+.+.+.. .+..++ .+.+|++|+.+.+.++.... ..+....|.++++|+.+.+.
T Consensus 243 -~---------aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~- 308 (401)
T 4fdw_A 243 -E---------AFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP- 308 (401)
T ss_dssp -T---------TTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-
T ss_pred -c---------cccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-
Confidence 0 0111 3455555533 122222 55666666666665544320 01344566666777777766
Q ss_pred CCCCCCCC--ccccccccEEEeecCCCcCcCCC--CCCCCCcCEEeccCCCCCCcCCC--CCCCC-CCCEEEeeCCC
Q 003421 362 TKLKSLPP--LSNLHRLRKLFLKNCELLEELPK--MNGLENLEVLDLSGCSKLVEFPK--LKDFP-KLELLDISNTG 431 (821)
Q Consensus 362 ~~l~~l~~--~~~l~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~c~~l~~i~~--l~~l~-~L~~L~l~~~~ 431 (821)
+.++.++. +.++.+|+.+.+.++ ++.+.. |.++ +|+.+++.++.. ..++. +..++ .++.+.+..+.
T Consensus 309 ~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~-~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 309 ESIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTP-PQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSC-CBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCC-cccccccccCCCCCccEEEeCHHH
Confidence 33555555 666666776666543 333332 5566 677777666532 22322 55553 45666655443
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.15 E-value=1.1e-09 Score=117.92 Aligned_cols=165 Identities=13% Similarity=0.209 Sum_probs=107.8
Q ss_pred hcCcCCcEEEeecCCCCcccc-cccccccCCCCCCCccEEEcCCCCCCCCc-ccccCCCCccEEeccCCcCCCcCchHhh
Q 003421 96 ARMKQLHALAIFNSGFKSLDL-SSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIELLKKLTVLEISGANSVQKIPDKLL 173 (821)
Q Consensus 96 ~~l~~L~~L~l~~~~~~~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~lp~~~~ 173 (821)
..+..++.+.+-. .++.++. +|.++ . |+.+.+..+ +.... .+|.++ +|+.+.+.. .+..++...|
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~-------L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF 176 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-Q-------IAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIF 176 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-C-------CSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTT
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-C-------ccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHh
Confidence 3456666666643 3445543 34443 5 777777655 33322 345553 588888874 5677777777
Q ss_pred hCCCCccEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCcc--cccCCcccEEeecCCCCCCccChhhccCCCCCC
Q 003421 174 DEMTKLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLPR--INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQ 250 (821)
Q Consensus 174 ~~l~~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 250 (821)
.+|.+|+.+++.+|.++.++. ...+.+|+.+.+.++ ...++. +.++++|+.+.+..+ ++.++...|.+ .+|+
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGIT 251 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCS
T ss_pred hCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCcc
Confidence 888888888888888888777 333678888888754 344443 677888888888753 66666566666 6788
Q ss_pred EeeccCcCCcCCCC--cCCCCCCceEeecCc
Q 003421 251 MIDLSRTQIKRLPK--FGYLKRLSRISIEGC 279 (821)
Q Consensus 251 ~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~ 279 (821)
.+.+ .+.++.++. +..+++|+.+.+.++
T Consensus 252 ~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 252 TVKL-PNGVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp EEEE-ETTCCEECTTTTTTCTTCCEEEEESS
T ss_pred EEEe-CCCccEEChhHhhCCCCCCEEEeCCc
Confidence 8888 344555543 777778888877654
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.09 E-value=1.1e-12 Score=127.33 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=81.4
Q ss_pred HHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhh
Q 003421 94 FLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLL 173 (821)
Q Consensus 94 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~ 173 (821)
.|..+++|++|++++|.+..+| .+..+++ |++|++++|.+...+..+..+++|++|++++| .+..+| . +
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~-------L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~-~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMEN-------LRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-G-I 111 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTT-------CCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-H-H
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCC-------CCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-c-c
Confidence 5677888888888888887777 7777777 88888888887765555666778888888875 455565 3 4
Q ss_pred hCCCCccEEEecCCCCCcCcC---cCCCCcccEEEccCCCCCCC
Q 003421 174 DEMTKLQSLNLSGCQMKFLPS---LSKLFNLRFLILRDCSSLQK 214 (821)
Q Consensus 174 ~~l~~L~~L~l~~~~i~~lp~---l~~l~~L~~L~l~~~~~~~~ 214 (821)
..+++|++|++++|.++.++. +..+++|++|++++|.+...
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 677888888888888776543 67777777777777755443
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.08 E-value=2.4e-09 Score=115.89 Aligned_cols=313 Identities=17% Similarity=0.183 Sum_probs=179.4
Q ss_pred CCCceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCccc-ccccccccCCCCCCCccEEEcCCCCCCCCcccccC
Q 003421 72 KWDEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLD-LSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIEL 150 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~ 150 (821)
++.+|+.+.+.. .+. .|+..+|.++++|+.+++..+ +..++ .++..+.. |+.+.+..+-..-....+.+
T Consensus 69 ~c~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~-------L~~i~~p~~l~~i~~~aF~~ 138 (394)
T 4fs7_A 69 GCRKVTEIKIPS-TVR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYA-------LKSILLPLMLKSIGVEAFKG 138 (394)
T ss_dssp TCTTEEEEECCT-TCC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT-------CCCCCCCTTCCEECTTTTTT
T ss_pred CCCCceEEEeCC-Ccc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhccccc-------chhhcccCceeeecceeeec
Confidence 578999999964 454 788888999999999999654 55554 45667777 77776654321111234444
Q ss_pred CCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc--cccCCcccE
Q 003421 151 LKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR--INELVRLEI 226 (821)
Q Consensus 151 l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~ 226 (821)
+..+...... ....+....|.++++|+.+.+..+ +..++. |..+.+|+.+.+..+ ...++. +.++..|+.
T Consensus 139 ~~~~~~~~~~---~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 139 CDFKEITIPE---GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLEN 212 (394)
T ss_dssp CCCSEEECCT---TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCB
T ss_pred ccccccccCc---cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccce
Confidence 4433333222 334455555677777777777644 344544 677777777776654 233332 456666666
Q ss_pred EeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCC--CcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCC
Q 003421 227 IDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLP--KFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVS 304 (821)
Q Consensus 227 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (821)
+.+..+ ...+. .......+|+.+.+... ++.+. .+..+..++.+.+..... .+. ...+..+..
T Consensus 213 i~~~~~--~~~i~-~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~---------~~~F~~~~~ 277 (394)
T 4fs7_A 213 MEFPNS--LYYLG-DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIG---------GSLFYNCSG 277 (394)
T ss_dssp CCCCTT--CCEEC-TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EEC---------SCTTTTCTT
T ss_pred eecCCC--ceEee-hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc--eee---------ccccccccc
Confidence 665543 22222 22333456666666432 22222 245556666666543210 110 011445556
Q ss_pred CcEEEecCCCCCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--ccccccccEEEee
Q 003421 305 LSELHLRDCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLK 382 (821)
Q Consensus 305 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~ 382 (821)
++.+...... +. -..+..+.+|+.+.+..+ .. .+...+|.++.+|+.+++..+ ++.+.. +.++.+|+.+++.
T Consensus 278 l~~~~~~~~~-i~-~~~F~~~~~L~~i~l~~~--i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 278 LKKVIYGSVI-VP-EKTFYGCSSLTEVKLLDS--VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp CCEEEECSSE-EC-TTTTTTCTTCCEEEECTT--CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCC
T ss_pred cceeccCcee-ec-cccccccccccccccccc--cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEEC
Confidence 6666554421 10 114566777777777543 22 244566777788888877643 555555 7777888888876
Q ss_pred cCCCcCcCCC--CCCCCCcCEEeccCCCCCCcCCC-CCCCCCCCEE
Q 003421 383 NCELLEELPK--MNGLENLEVLDLSGCSKLVEFPK-LKDFPKLELL 425 (821)
Q Consensus 383 ~~~~~~~l~~--~~~l~~L~~L~l~~c~~l~~i~~-l~~l~~L~~L 425 (821)
.+ ++.+.. +.+|++|+.+++..+ +..+.. |.++++|+.+
T Consensus 352 ~~--l~~I~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 352 LS--LRKIGANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TT--CCEECTTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred cc--ccEehHHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 54 444443 777888888888653 333333 6677777654
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=7.8e-10 Score=104.33 Aligned_cols=103 Identities=19% Similarity=0.243 Sum_probs=81.4
Q ss_pred cEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCc-ccccCCCCccEEeccCCcCCCcCchHhhhCCCCcc
Q 003421 102 HALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQ 180 (821)
Q Consensus 102 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~ 180 (821)
+.+++++++++.+|..+. .+ |++|++++|.+.+.+ ..+.++++|++|++++| .+..+|..+|.++++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~-------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~ 84 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TD-------KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLT 84 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TT-------CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cEEEeCCCCCCccCCCcC--CC-------CcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhh
Confidence 678888888888887664 55 888888888887765 46788888888888874 66778877778888888
Q ss_pred EEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCC
Q 003421 181 SLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQK 214 (821)
Q Consensus 181 ~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~ 214 (821)
+|++++|.++.+|. +..+++|++|++++|.+...
T Consensus 85 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 85 QLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred EEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 88888888888776 77888888888888875543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=7.6e-10 Score=104.05 Aligned_cols=106 Identities=19% Similarity=0.251 Sum_probs=84.0
Q ss_pred CcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCCCc-ccccCCCCccEEeccCCcCCCcCchHhhhCCCCc
Q 003421 101 LHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIELLKKLTVLEISGANSVQKIPDKLLDEMTKL 179 (821)
Q Consensus 101 L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L 179 (821)
.++++++++.++.+|..+. .. |++|++++|.+.+.+ ..+.++++|++|++++| .+..+|..+|..+++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~-------l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TT-------TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQL 80 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TT-------CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCEEEeCCCCcCccCccCC--CC-------CcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCC
Confidence 4678888888888887664 45 888888888888775 45788888888888874 5677887777888889
Q ss_pred cEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCc
Q 003421 180 QSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLP 216 (821)
Q Consensus 180 ~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~ 216 (821)
++|++++|.++.+|. +..+++|++|++++|.+....+
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998888888776 7888888888888887655433
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=2.4e-12 Score=124.98 Aligned_cols=111 Identities=24% Similarity=0.265 Sum_probs=60.3
Q ss_pred cccccccccccCCCCCCCccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcC
Q 003421 113 SLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFL 192 (821)
Q Consensus 113 ~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~l 192 (821)
.+|..+..+.+ |++|++++|.+.+.+ .+..+++|++|++++| .+..+|..+ ..+++|++|++++|.++.+
T Consensus 39 ~l~~~~~~l~~-------L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~-~~~~~L~~L~L~~N~l~~l 108 (198)
T 1ds9_A 39 KMDATLSTLKA-------CKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLD-AVADTLEELWISYNQIASL 108 (198)
T ss_dssp CCHHHHHHTTT-------CSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHH-HHHHHCSEEEEEEEECCCH
T ss_pred hhhHHHhcCCC-------CCEEECCCCCCcccc-ccccCCCCCEEECCCC-Ccccccchh-hcCCcCCEEECcCCcCCcC
Confidence 33335666666 666666666665533 5556666666666653 344555432 4455666666666666655
Q ss_pred cCcCCCCcccEEEccCCCCCCCC--cccccCCcccEEeecCCC
Q 003421 193 PSLSKLFNLRFLILRDCSSLQKL--PRINELVRLEIIDLSGAT 233 (821)
Q Consensus 193 p~l~~l~~L~~L~l~~~~~~~~l--~~l~~l~~L~~L~l~~~~ 233 (821)
|.+..+++|++|++++|.+...- +.+..+++|+.|++++|.
T Consensus 109 ~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 109 SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 54555556666666655433211 124555555555555544
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.85 E-value=2.9e-07 Score=99.41 Aligned_cols=247 Identities=14% Similarity=0.229 Sum_probs=121.5
Q ss_pred cccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCc
Q 003421 147 DIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVR 223 (821)
Q Consensus 147 ~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~ 223 (821)
+|..+.+|+.+.+.. .+..++...|..+.+|+.+.+.. .+..++. +..+.+|+.+.+.++ ...+.. ......
T Consensus 109 aF~~c~~L~~i~~~~--~~~~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~ 183 (394)
T 4gt6_A 109 AFMFCSELTDIPILD--SVTEIDSEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTA 183 (394)
T ss_dssp TTTTCTTCCBCGGGT--TCSEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCC
T ss_pred hchhcccceeeccCC--ccceehhhhhhhhcccccccccc-eeeeecccceecccccccccccce--eeEeccccccccc
Confidence 455555666555543 35555555556666666666643 2334443 566666666666543 222222 112245
Q ss_pred ccEEeecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCC--cCCCCCCceEeecCccccccccccccCCCCCCCCCCC
Q 003421 224 LEIIDLSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPK--FGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLF 301 (821)
Q Consensus 224 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 301 (821)
|+.+.+... +..+....+..+.++............... +..........+. ...
T Consensus 184 l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 240 (394)
T 4gt6_A 184 LTQIHIPAK--VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIR---------------------YPS 240 (394)
T ss_dssp CSEEEECTT--CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEE---------------------CCT
T ss_pred eeEEEECCc--ccccccchhhhccccceecccccccccccceeecccccccccccc---------------------ccc
Confidence 666666542 334443455666666666554433332221 0000000000000 001
Q ss_pred CCCCcEEEecCCCCCCCCC--CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--cccccccc
Q 003421 302 PVSLSELHLRDCPTLKRLP--HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLR 377 (821)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~ 377 (821)
...+..+.+.. ....+. .+.++.+|+.+.+.... . .+....|.+++.|+.+.+. +.++.++. +.++.+|+
T Consensus 241 ~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~~-~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~ 314 (394)
T 4gt6_A 241 QREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDSV-V--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLK 314 (394)
T ss_dssp TCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTTC-C--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCC
T ss_pred ccccceEEcCC--cceEcccceeeecccccEEeccccc-c--eecCcccccccccccccCC-CcccccCceeecCCCCcC
Confidence 11122222211 111111 45556666666664432 1 2344556666777777764 34455555 66677777
Q ss_pred EEEeecCCCcCcCCC--CCCCCCcCEEeccCCCCCCcCCC--CCCCCCCCEEEeeCCC
Q 003421 378 KLFLKNCELLEELPK--MNGLENLEVLDLSGCSKLVEFPK--LKDFPKLELLDISNTG 431 (821)
Q Consensus 378 ~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~c~~l~~i~~--l~~l~~L~~L~l~~~~ 431 (821)
.+++.++ ++.+.. |.+|.+|+.+.+.. .+..++. |.++.+|+.+++.++.
T Consensus 315 ~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 315 SIDIPEG--ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EEEeCCc--ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 7777543 444433 66777777777753 2555555 7777777777776543
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.84 E-value=1.3e-07 Score=102.33 Aligned_cols=315 Identities=10% Similarity=0.122 Sum_probs=170.1
Q ss_pred ceeEEEecCCCccccccHHHHhcCcCCcEEEeecCC---CCccc-ccccccccCCCCCCCccEEEcCCCCCCCC-ccccc
Q 003421 75 EVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSG---FKSLD-LSSKTEKKSEPEKLPMKLLVLRSCNLLNG-IGDIE 149 (821)
Q Consensus 75 ~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~l~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~i~ 149 (821)
.|+.+.+..+ ++ .|...+|.++++|+.+.+..+. +..+. .+|..+.. |+.+.+..+ +... ...+.
T Consensus 65 ~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~-------L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 65 VLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSE-------LTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp CCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTT-------CCBCGGGTT-CSEECTTTTT
T ss_pred cCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhccc-------ceeeccCCc-cceehhhhhh
Confidence 4888888654 54 7888889999999999998764 45554 46777777 888877654 2222 25678
Q ss_pred CCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC-cCCCCcccEEEccCCCCCCCCcccccCCcccEEe
Q 003421 150 LLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS-LSKLFNLRFLILRDCSSLQKLPRINELVRLEIID 228 (821)
Q Consensus 150 ~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~-l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~ 228 (821)
.+.+|+.+.+.. ....++...|..+..|+.+.+..+ ++.+.. .....+|+.+.+...-.......+..+..+....
T Consensus 135 ~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 135 HCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTIT 211 (394)
T ss_dssp TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEE
T ss_pred hhcccccccccc--eeeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceec
Confidence 899999999974 567888888899999999999764 666665 3344678888887642211122256677777776
Q ss_pred ecCCCCCCccChhhccCCCCCCEeeccCcCCcCCCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEE
Q 003421 229 LSGATSLTFFPEQDLSKHQHLQMIDLSRTQIKRLPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSEL 308 (821)
Q Consensus 229 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L 308 (821)
..... ........+........-.+. ......+..+.+... +..+ ....+..+..|+.+
T Consensus 212 ~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ip~~--v~~i---------~~~aF~~c~~L~~i 270 (394)
T 4gt6_A 212 SDSES-YPAIDNVLYEKSANGDYALIR---------YPSQREDPAFKIPNG--VARI---------ETHAFDSCAYLASV 270 (394)
T ss_dssp ECCSS-SCBSSSCEEEECTTSCEEEEE---------CCTTCCCSEEECCTT--EEEE---------CTTTTTTCSSCCEE
T ss_pred ccccc-cccccceeecccccccccccc---------cccccccceEEcCCc--ceEc---------ccceeeecccccEE
Confidence 65432 221111111111100000000 001111111111100 0000 00013345555555
Q ss_pred EecCCCCCCCCCCCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--ccccccccEEEeecCCC
Q 003421 309 HLRDCPTLKRLPHIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLKNCEL 386 (821)
Q Consensus 309 ~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~~ 386 (821)
.+......-.-..+.++.+|+.+.+... .. .+....|.++.+|+.+.+..+ ++.+.. +.++.+|+.+.+.++
T Consensus 271 ~lp~~~~~I~~~aF~~c~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-- 344 (394)
T 4gt6_A 271 KMPDSVVSIGTGAFMNCPALQDIEFSSR-IT--ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-- 344 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--
T ss_pred ecccccceecCcccccccccccccCCCc-cc--ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--
Confidence 5543211111114556666666666432 12 244556666777777777543 444444 666777777777543
Q ss_pred cCcCCC--CCCCCCcCEEeccCCCCCCcCCCCCCCCCCCEEEeeCCC
Q 003421 387 LEELPK--MNGLENLEVLDLSGCSKLVEFPKLKDFPKLELLDISNTG 431 (821)
Q Consensus 387 ~~~l~~--~~~l~~L~~L~l~~c~~l~~i~~l~~l~~L~~L~l~~~~ 431 (821)
++.+.. |.+|++|+.+++.++.. .+..+..+.+|+.+.+..+.
T Consensus 345 v~~I~~~aF~~C~~L~~i~~~~~~~--~~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 345 VTKIPESAFSNCTALNNIEYSGSRS--QWNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CCBCCGGGGTTCTTCCEEEESSCHH--HHHTCBCCCCC---------
T ss_pred cCEEhHhHhhCCCCCCEEEECCcee--ehhhhhccCCCCEEEeCCCC
Confidence 444443 66777777777765421 11124456666666665443
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.83 E-value=1.6e-08 Score=94.88 Aligned_cols=99 Identities=23% Similarity=0.222 Sum_probs=49.5
Q ss_pred ccEEEcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccC
Q 003421 131 MKLLVLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRD 208 (821)
Q Consensus 131 L~~L~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~ 208 (821)
.++++++++.+...+..+ .++|++|++++| .+..+++..|..+++|++|++++|+++.+|. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 455666666555544433 255566666553 3444443434555666666666665555554 45555555555555
Q ss_pred CCCCCCCcc-cccCCcccEEeecCC
Q 003421 209 CSSLQKLPR-INELVRLEIIDLSGA 232 (821)
Q Consensus 209 ~~~~~~l~~-l~~l~~L~~L~l~~~ 232 (821)
|.+....+. +..+++|+.|++++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCC
Confidence 543332222 334444444444443
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.82 E-value=2e-08 Score=94.63 Aligned_cols=84 Identities=23% Similarity=0.245 Sum_probs=39.6
Q ss_pred CCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcc-cccCCcccEEeecCCCCCCccChhhccCCCCCCEee
Q 003421 177 TKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPR-INELVRLEIIDLSGATSLTFFPEQDLSKHQHLQMID 253 (821)
Q Consensus 177 ~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 253 (821)
++|++|++++|.++.++. +..+++|++|++++|.+....+. +..+++|+.|++++|. ++.+++..+..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEE
Confidence 344444444444444322 44444444444444433322222 2444455555554443 4444444455566666666
Q ss_pred ccCcCCcC
Q 003421 254 LSRTQIKR 261 (821)
Q Consensus 254 l~~~~l~~ 261 (821)
+++|.+..
T Consensus 112 L~~N~~~c 119 (174)
T 2r9u_A 112 LYNNPWDC 119 (174)
T ss_dssp CCSSCBCT
T ss_pred eCCCCccc
Confidence 66665553
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.59 E-value=8.6e-09 Score=109.89 Aligned_cols=150 Identities=19% Similarity=0.150 Sum_probs=78.4
Q ss_pred CceeEEEecCCCccccccHHHHhc-----CcCCcEEEeecCCCCc--ccccccccccCCCCCCCccEEEcCCCCCCCCc-
Q 003421 74 DEVSTLLIDGDRLRLEVDEGFLAR-----MKQLHALAIFNSGFKS--LDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI- 145 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~-----l~~L~~L~l~~~~~~~--l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~- 145 (821)
+.++.|++++|.+.. .....+.. .++|++|++++|.++. +......+.+ |++|++++|.+....
T Consensus 72 ~~L~~L~Ls~n~l~~-~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-------L~~L~Ls~n~l~~~~~ 143 (372)
T 3un9_A 72 SSLRQLNLAGVRMTP-VKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLR-------ARKLGLQLNSLGPEAC 143 (372)
T ss_dssp TTCCEEECTTSCCCH-HHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHT-------EEEEECCSSCCCHHHH
T ss_pred hhCCEEEecCCCCCH-HHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHh-------ccHhhcCCCCCCHHHH
Confidence 466777777777652 22222222 2567777777776632 2222233445 777777777664322
Q ss_pred ccc-----cCCCCccEEeccCCcCCCc-----CchHhhhCCCCccEEEecCCCCCc-----CcC-cCCCCcccEEEccCC
Q 003421 146 GDI-----ELLKKLTVLEISGANSVQK-----IPDKLLDEMTKLQSLNLSGCQMKF-----LPS-LSKLFNLRFLILRDC 209 (821)
Q Consensus 146 ~~i-----~~l~~L~~L~l~~~~~~~~-----lp~~~~~~l~~L~~L~l~~~~i~~-----lp~-l~~l~~L~~L~l~~~ 209 (821)
..+ ...++|++|++++|. ++. ++.. +..+++|++|++++|.+++ ++. +..+++|++|++++|
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH-HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH-HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 111 234567777776643 322 2222 2456667777777666654 233 555566666666666
Q ss_pred CCCCC----Ccc-cccCCcccEEeecCCC
Q 003421 210 SSLQK----LPR-INELVRLEIIDLSGAT 233 (821)
Q Consensus 210 ~~~~~----l~~-l~~l~~L~~L~l~~~~ 233 (821)
.+... +.. +...++|++|++++|.
T Consensus 222 ~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 222 GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 54321 111 2344556666666654
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.57 E-value=1.4e-07 Score=100.14 Aligned_cols=101 Identities=20% Similarity=0.160 Sum_probs=71.9
Q ss_pred EEEeecC-CCCcccccccccccCCCCCCCccEEEcCC-CCCCCCc-ccccCCCCccEEeccCCcCCCcCchHhhhCCCCc
Q 003421 103 ALAIFNS-GFKSLDLSSKTEKKSEPEKLPMKLLVLRS-CNLLNGI-GDIELLKKLTVLEISGANSVQKIPDKLLDEMTKL 179 (821)
Q Consensus 103 ~L~l~~~-~~~~l~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L 179 (821)
.++++++ ++..+|. +..+.+ |++|+|++ |.+.+.+ ..|+++++|++|+|++| .+..+++..|.++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~-------L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L 82 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAEN-------LTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRL 82 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSC-------CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCC
T ss_pred EEEcCCCCCCCccCC-CCCCCC-------eeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCC
Confidence 4566666 6777777 777777 88888875 7776655 35777888888888874 4666666666788888
Q ss_pred cEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCC
Q 003421 180 QSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQ 213 (821)
Q Consensus 180 ~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~ 213 (821)
++|+|++|.++.+|. +..+. |++|++.+|.+..
T Consensus 83 ~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 83 SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 888888888887776 44443 7888887776543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.50 E-value=1.2e-08 Score=108.69 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=107.4
Q ss_pred CcCCcEEEeecCCCCccc-cccccc-----ccCCCCCCCccEEEcCCCCCCCCc-cc-ccCCCCccEEeccCCcCCCcCc
Q 003421 98 MKQLHALAIFNSGFKSLD-LSSKTE-----KKSEPEKLPMKLLVLRSCNLLNGI-GD-IELLKKLTVLEISGANSVQKIP 169 (821)
Q Consensus 98 l~~L~~L~l~~~~~~~l~-~~~~~l-----~~~~~~~~~L~~L~l~~~~~~~~~-~~-i~~l~~L~~L~l~~~~~~~~lp 169 (821)
++.|++|++++|.++... ..+... .. |++|++++|.+.... .. ...+++|++|++++|. ++..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~-------L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~ 142 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHA-------LDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEA 142 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSC-------EEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCC-------ceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHH
Confidence 578999999999984432 122222 45 999999999875432 22 2346789999999864 44333
Q ss_pred hHhh-----hCCCCccEEEecCCCCCc-----CcC-cCCCCcccEEEccCCCCCCC----Ccc-cccCCcccEEeecCCC
Q 003421 170 DKLL-----DEMTKLQSLNLSGCQMKF-----LPS-LSKLFNLRFLILRDCSSLQK----LPR-INELVRLEIIDLSGAT 233 (821)
Q Consensus 170 ~~~~-----~~l~~L~~L~l~~~~i~~-----lp~-l~~l~~L~~L~l~~~~~~~~----l~~-l~~l~~L~~L~l~~~~ 233 (821)
...+ ...++|++|++++|.+++ ++. +..+++|++|++++|.+... +.. +...++|+.|++++|.
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 2222 246889999999999875 444 67788999999999875432 222 5667789999999887
Q ss_pred CCCccCh----hhccCCCCCCEeeccCcCCcC
Q 003421 234 SLTFFPE----QDLSKHQHLQMIDLSRTQIKR 261 (821)
Q Consensus 234 ~~~~~~~----~~l~~l~~L~~L~l~~~~l~~ 261 (821)
++.... ..+...++|++|++++|.++.
T Consensus 223 -i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 223 -AGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred -CCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 543221 234567889999999998874
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.46 E-value=1.4e-05 Score=85.65 Aligned_cols=121 Identities=18% Similarity=0.292 Sum_probs=70.8
Q ss_pred CCCCCCcEEEecCCCCCCCCC--CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--cccccc
Q 003421 300 LFPVSLSELHLRDCPTLKRLP--HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHR 375 (821)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~ 375 (821)
..+.+++.+.+... +..+. .+..+..|+.+.+..+ .. .+....+.++.+|+.+.+..+ +..++. +..+.+
T Consensus 214 ~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 214 SYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred ccccccceeeeccc--eeEEccccccCCccceEEEcCCC--cc-EeCccccceeehhcccccccc-ceeccccccccccc
Confidence 34555666665442 22222 4566667777777543 11 244556666777777777543 444444 667777
Q ss_pred ccEEEeecCCCcCcCCC--CCCCCCcCEEeccCCCCCCcCCC--CCCCCCCCEEEeeC
Q 003421 376 LRKLFLKNCELLEELPK--MNGLENLEVLDLSGCSKLVEFPK--LKDFPKLELLDISN 429 (821)
Q Consensus 376 L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~c~~l~~i~~--l~~l~~L~~L~l~~ 429 (821)
|+.+.+.++. ++.++. +.+|.+|+.+.+.. .+..++. |.++.+|+.+.+..
T Consensus 288 L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 288 LTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccc-cceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 7777776654 333433 66777777777753 2555554 77777777776643
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.43 E-value=5.6e-07 Score=95.45 Aligned_cols=78 Identities=18% Similarity=0.095 Sum_probs=43.1
Q ss_pred EEcCCC-CCCCCcccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCC
Q 003421 134 LVLRSC-NLLNGIGDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCS 210 (821)
Q Consensus 134 L~l~~~-~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~ 210 (821)
++.+++ .+...+. +..+++|++|+|++++.+..+|...|..+++|++|+|++|.++.++. |..+++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 455554 4554444 55566666666654344555555445566666666666666655443 5555566666655554
Q ss_pred CC
Q 003421 211 SL 212 (821)
Q Consensus 211 ~~ 212 (821)
+.
T Consensus 92 l~ 93 (347)
T 2ifg_A 92 LE 93 (347)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.25 E-value=0.00011 Score=78.56 Aligned_cols=298 Identities=11% Similarity=0.109 Sum_probs=154.2
Q ss_pred CceeEEEecCCCccccccHHHHhcCcCCcEEEeecCCCCcccc-cccccccCCCCCCCccEEEcCCCCCCCCc-ccccCC
Q 003421 74 DEVSTLLIDGDRLRLEVDEGFLARMKQLHALAIFNSGFKSLDL-SSKTEKKSEPEKLPMKLLVLRSCNLLNGI-GDIELL 151 (821)
Q Consensus 74 ~~l~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~i~~l 151 (821)
.+++.+.+.. .++ .|+..+|.++.+|+.+.+.. .+..+.. +|..+ . |+.+.+..+ +.... ..+..+
T Consensus 46 ~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~-------l~~i~~~~~-l~~I~~~aF~~~ 113 (379)
T 4h09_A 46 DRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-K-------LQSYTGMER-VKKFGDYVFQGT 113 (379)
T ss_dssp GGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-C-------CCEEEECTT-CCEECTTTTTTC
T ss_pred cCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-C-------CceEECCce-eeEeccceeccC
Confidence 4566666643 343 66777777888888888753 3555543 34444 3 566555432 22211 234333
Q ss_pred CCccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCCCCCCcccccCCcccEEee
Q 003421 152 KKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSSLQKLPRINELVRLEIIDL 229 (821)
Q Consensus 152 ~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l 229 (821)
+|+.+.+.. .+..+....|.++ +|+...+..+ ++.+.. +..+.+++...+...............
T Consensus 114 -~L~~i~lp~--~~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~-------- 180 (379)
T 4h09_A 114 -DLDDFEFPG--ATTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLY-------- 180 (379)
T ss_dssp -CCSEEECCT--TCCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEE--------
T ss_pred -CcccccCCC--ccccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceec--------
Confidence 677777754 3455555555554 4555554432 333333 566666666665543211100000000
Q ss_pred cCCCCCCccChhhccCCCCCCEeeccCcCCcC-CCCcCCCCCCceEeecCccccccccccccCCCCCCCCCCCCCCCcEE
Q 003421 230 SGATSLTFFPEQDLSKHQHLQMIDLSRTQIKR-LPKFGYLKRLSRISIEGCKRFHNFHEIKPRDSNTKSKPLFPVSLSEL 308 (821)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L 308 (821)
.. ..... ..+.....+..+.+....... -..+....+|+.+.+... +..+ ....+..+..|+.+
T Consensus 181 ~~---~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~--~~~i---------~~~~f~~~~~L~~i 245 (379)
T 4h09_A 181 NK---NKTIL-ESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG--VTTL---------GDGAFYGMKALDEI 245 (379)
T ss_dssp ET---TSSEE-EECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT--CCEE---------CTTTTTTCSSCCEE
T ss_pred cc---cccee-ccccccccccccccccceeEEeecccccccccceeeeccc--eeEE---------ccccccCCccceEE
Confidence 00 00000 111122233333322211110 111333344444444221 0000 01114456677777
Q ss_pred EecCCCCCCCCC--CCCCCCCcCEEEecCCCCCCcccChhhhcCCCCCcEEEecCCCCCCCCC--ccccccccEEEeecC
Q 003421 309 HLRDCPTLKRLP--HIAGLKNLEVLDVSGTSDSKFAISDESFHDLDYLRELNLSNTKLKSLPP--LSNLHRLRKLFLKNC 384 (821)
Q Consensus 309 ~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~ 384 (821)
.+..+ +..+. .+.++.+|+.+.+... .. ......|.++++|+.+.+.++.++.++. +.++.+|+.+.+..+
T Consensus 246 ~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 246 AIPKN--VTSIGSFLLQNCTALKTLNFYAK--VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp EECTT--CCEECTTTTTTCTTCCEEEECCC--CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred EcCCC--ccEeCccccceeehhcccccccc--ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 77553 33332 5677888888888543 22 2455678888899999998888887776 888899999988654
Q ss_pred CCcCcCCC--CCCCCCcCEEeccCCCCCCcCCC--CCCCC
Q 003421 385 ELLEELPK--MNGLENLEVLDLSGCSKLVEFPK--LKDFP 420 (821)
Q Consensus 385 ~~~~~l~~--~~~l~~L~~L~l~~c~~l~~i~~--l~~l~ 420 (821)
++.+.. +.+|.+|+.+.+..+ +..+.. |.++.
T Consensus 321 --l~~I~~~aF~~C~~L~~i~ip~~--v~~I~~~aF~~c~ 356 (379)
T 4h09_A 321 --LKTIQVYAFKNCKALSTISYPKS--ITLIESGAFEGSS 356 (379)
T ss_dssp --CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTSS
T ss_pred --ccEEHHHHhhCCCCCCEEEECCc--cCEEchhHhhCCC
Confidence 455543 788888888888542 445544 54443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.08 E-value=2.7e-06 Score=89.72 Aligned_cols=179 Identities=19% Similarity=0.255 Sum_probs=86.6
Q ss_pred CCCceeEEEecCCCccc-cc---cHH---HHhcCcCCcEEEeecCCCC----------cccccccccccCCCCCCCccEE
Q 003421 72 KWDEVSTLLIDGDRLRL-EV---DEG---FLARMKQLHALAIFNSGFK----------SLDLSSKTEKKSEPEKLPMKLL 134 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~-~~---~~~---~~~~l~~L~~L~l~~~~~~----------~l~~~~~~l~~~~~~~~~L~~L 134 (821)
....++.|.+....+.+ .. ... ...++++|+.|.+.+.... .+...+..+++ |+.|
T Consensus 105 ~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~-------L~~L 177 (362)
T 2ra8_A 105 KLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPL-------LNNL 177 (362)
T ss_dssp TGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTT-------CCEE
T ss_pred CchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCC-------CcEE
Confidence 44567777776544431 11 111 1345678888888665331 12222223333 7777
Q ss_pred EcCCCCCCCCcccccCCCCccEEeccCCcCCCcCchHhh-hCCCCccEEEecCC--C------CCcCcC-c--CCCCccc
Q 003421 135 VLRSCNLLNGIGDIELLKKLTVLEISGANSVQKIPDKLL-DEMTKLQSLNLSGC--Q------MKFLPS-L--SKLFNLR 202 (821)
Q Consensus 135 ~l~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~lp~~~~-~~l~~L~~L~l~~~--~------i~~lp~-l--~~l~~L~ 202 (821)
+++++..... +.+. +++|++|++..|.........+. ..+++|++|+|+.+ . +..+.. + ..+++|+
T Consensus 178 ~L~g~~~l~l-~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr 255 (362)
T 2ra8_A 178 KIKGTNNLSI-GKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLK 255 (362)
T ss_dssp EEECCBTCBC-CSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCC
T ss_pred EEeCCCCcee-cccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcC
Confidence 7766532221 2232 66777777765432211111221 25677777776421 1 112222 2 2456677
Q ss_pred EEEccCCCCCCCCcc-c---ccCCcccEEeecCCCCCCccCh----hhccCCCCCCEeeccCcCCc
Q 003421 203 FLILRDCSSLQKLPR-I---NELVRLEIIDLSGATSLTFFPE----QDLSKHQHLQMIDLSRTQIK 260 (821)
Q Consensus 203 ~L~l~~~~~~~~l~~-l---~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~l~ 260 (821)
+|++.+|.+....+. + ..+++|+.|+++.|. ++.... ..+..+++|+.|+++.|.++
T Consensus 256 ~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 256 WLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp EEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred EEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 777766654322211 1 245666666666554 333110 12234566666666666555
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.96 E-value=6.3e-06 Score=86.86 Aligned_cols=175 Identities=18% Similarity=0.137 Sum_probs=111.5
Q ss_pred CCCceeEEEecCCCccc--------cccHHHHhcCcCCcEEEeecCCCCcccccccccccCCCCCCCccEEEcCCCCCCC
Q 003421 72 KWDEVSTLLIDGDRLRL--------EVDEGFLARMKQLHALAIFNSGFKSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLN 143 (821)
Q Consensus 72 ~~~~l~~L~l~~n~~~~--------~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 143 (821)
.+++|+.|.+....... .....++..+|+|+.|+++++.-..++. + .+.+ |++|++..+.+..
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~-------L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPN-------LKSLEIISGGLPD 207 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTT-------CSEEEEECSBCCH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCC-------CcEEEEecCCCCh
Confidence 45789999987653210 0123567789999999999874233443 2 2555 9999999887654
Q ss_pred Cc-cccc--CCCCccEEeccCC--cCCC-----cCchHhh-hCCCCccEEEecCCCCCc-CcC----cCCCCcccEEEcc
Q 003421 144 GI-GDIE--LLKKLTVLEISGA--NSVQ-----KIPDKLL-DEMTKLQSLNLSGCQMKF-LPS----LSKLFNLRFLILR 207 (821)
Q Consensus 144 ~~-~~i~--~l~~L~~L~l~~~--~~~~-----~lp~~~~-~~l~~L~~L~l~~~~i~~-lp~----l~~l~~L~~L~l~ 207 (821)
.. ..+. .+++|++|+|+.+ +..+ .+...+. +.+++|++|++.+|.+.+ .+. ...+++|++|+++
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 22 2333 7899999998631 1111 1222211 358999999999998874 111 2468899999999
Q ss_pred CCCCCCC----Ccc-cccCCcccEEeecCCCCCCccChhhccC-CCCCCEeeccCcC
Q 003421 208 DCSSLQK----LPR-INELVRLEIIDLSGATSLTFFPEQDLSK-HQHLQMIDLSRTQ 258 (821)
Q Consensus 208 ~~~~~~~----l~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~ 258 (821)
.|.+... ++. +..+++|+.|+++.|. ++......+.. + ...++++.+.
T Consensus 288 ~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHHHHHHHc--CCEEEecCCc
Confidence 8875542 333 4678999999999876 44322122322 2 3556666654
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=1.8e-05 Score=72.93 Aligned_cols=81 Identities=12% Similarity=0.259 Sum_probs=44.6
Q ss_pred ccEEEcCCCCCCCC-cccccCCCCccEEeccCCcCCCcCchHhhhCC----CCccEEEecCCC-CCc--CcCcCCCCccc
Q 003421 131 MKLLVLRSCNLLNG-IGDIELLKKLTVLEISGANSVQKIPDKLLDEM----TKLQSLNLSGCQ-MKF--LPSLSKLFNLR 202 (821)
Q Consensus 131 L~~L~l~~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l----~~L~~L~l~~~~-i~~--lp~l~~l~~L~ 202 (821)
|+.||+++|.++.. ...+..+++|++|++++|..+++-.-..++.+ ++|++|++++|. +++ +..+..+++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 66667666665432 24456667777777776665554333323443 356666666653 554 22244556666
Q ss_pred EEEccCCCC
Q 003421 203 FLILRDCSS 211 (821)
Q Consensus 203 ~L~l~~~~~ 211 (821)
+|++++|..
T Consensus 143 ~L~L~~c~~ 151 (176)
T 3e4g_A 143 YLFLSDLPG 151 (176)
T ss_dssp EEEEESCTT
T ss_pred EEECCCCCC
Confidence 666665543
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.73 E-value=4.3e-05 Score=70.38 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=31.8
Q ss_pred hcCCceEEEecccCceecccccchhhh-------hcCcceeeccccccccccccccccccccCCCCceEEecCCCCCcc
Q 003421 671 LVKMEGLWIARCIEMESIFGEEKDIEL-------ARNLKILWVSNLPKVESLFNHKLQSVKNLENLKHLHLDCCPRLKC 742 (821)
Q Consensus 671 l~~L~~L~i~~C~~l~~l~~~~~~~~~-------~~~L~~L~i~~c~~L~~l~~~~~~~l~~~~sL~~L~i~~C~~L~~ 742 (821)
+++|++|.+.+|..++.- ++.. .++|+.|++++|+++..--- ..+..+++|++|.|++||+++.
T Consensus 84 ~~~L~~L~L~~C~~ItD~-----gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl---~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 84 LQYVEKIRLCKCHYIEDG-----CLERLSQLENLQKSMLEMEIISCGNVTDKGI---IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CSCCCEEEEESCTTCCHH-----HHHHHHTCHHHHHHCCEEEEESCTTCCHHHH---HHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCEEEeCCCCccCHH-----HHHHHHhcccccCCCCEEEcCCCCcCCHHHH---HHHhcCCCCCEEECCCCCCCCc
Confidence 556666666666655422 1221 12455555555555443100 0233456666666666666554
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.68 E-value=9.7e-06 Score=76.84 Aligned_cols=38 Identities=5% Similarity=0.069 Sum_probs=16.4
Q ss_pred CceeEEEecCC-Ccccccc---HHHHhcCcCCcEEEeecCCC
Q 003421 74 DEVSTLLIDGD-RLRLEVD---EGFLARMKQLHALAIFNSGF 111 (821)
Q Consensus 74 ~~l~~L~l~~n-~~~~~~~---~~~~~~l~~L~~L~l~~~~~ 111 (821)
+++++|++++| .+...-. ...+...++|++|+|++|.+
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i 77 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS 77 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 45555555555 4431111 11223344455555555554
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.56 E-value=4.7e-05 Score=72.02 Aligned_cols=111 Identities=13% Similarity=0.100 Sum_probs=84.1
Q ss_pred HHHHhcCcCCcEEEeecC-CCC-----cccccccccccCCCCCCCccEEEcCCCCCCCCc-----ccccCCCCccEEecc
Q 003421 92 EGFLARMKQLHALAIFNS-GFK-----SLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-----GDIELLKKLTVLEIS 160 (821)
Q Consensus 92 ~~~~~~l~~L~~L~l~~~-~~~-----~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-----~~i~~l~~L~~L~l~ 160 (821)
...+...+.|++|++++| .++ .+...+..... |++|++++|.+.... ..+...++|++|+++
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~-------L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTY-------VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCS-------CCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCC-------cCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc
Confidence 345678899999999999 883 34455566666 999999999886432 345667899999999
Q ss_pred CCcCCCc-----CchHhhhCCCCccEEEe--cCCCCCc-----CcC-cCCCCcccEEEccCCCC
Q 003421 161 GANSVQK-----IPDKLLDEMTKLQSLNL--SGCQMKF-----LPS-LSKLFNLRFLILRDCSS 211 (821)
Q Consensus 161 ~~~~~~~-----lp~~~~~~l~~L~~L~l--~~~~i~~-----lp~-l~~l~~L~~L~l~~~~~ 211 (821)
+|. ++. +... +...++|++|++ ++|.+.. +.. +...+.|++|++++|.+
T Consensus 102 ~N~-i~~~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 102 SNF-ISGSGILALVEA-LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SSC-CCHHHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCc-CCHHHHHHHHHH-HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 864 443 2333 467789999999 8899875 444 77779999999999864
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.38 E-value=0.00017 Score=71.84 Aligned_cols=80 Identities=21% Similarity=0.328 Sum_probs=50.1
Q ss_pred hcCcCCcEEEeecCCCCccc---ccccccccCCCCCCCccEEEcCCCCCCCCcccccCCC--CccEEeccCCcCCCcCc-
Q 003421 96 ARMKQLHALAIFNSGFKSLD---LSSKTEKKSEPEKLPMKLLVLRSCNLLNGIGDIELLK--KLTVLEISGANSVQKIP- 169 (821)
Q Consensus 96 ~~l~~L~~L~l~~~~~~~l~---~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~i~~l~--~L~~L~l~~~~~~~~lp- 169 (821)
.++++|++|+|++|.+..++ ..+..+++ |++|+|++|.+.+. ..+..+. +|++|++++|...+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~-------L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPN-------LKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTT-------CCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCC-------CCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCc
Confidence 46778888888888875443 44556666 88888887777653 2333333 77777777765444444
Q ss_pred -----hHhhhCCCCccEEE
Q 003421 170 -----DKLLDEMTKLQSLN 183 (821)
Q Consensus 170 -----~~~~~~l~~L~~L~ 183 (821)
..++..+++|+.||
T Consensus 239 ~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHHCTTCCEES
T ss_pred chhHHHHHHHHCcccCeEC
Confidence 23445666666665
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.24 E-value=0.00025 Score=70.58 Aligned_cols=78 Identities=26% Similarity=0.306 Sum_probs=33.0
Q ss_pred CCCCccEEEecCCCCCcCc---C-cCCCCcccEEEccCCCCCCCCcccccCC--cccEEeecCCCCCCccCh------hh
Q 003421 175 EMTKLQSLNLSGCQMKFLP---S-LSKLFNLRFLILRDCSSLQKLPRINELV--RLEIIDLSGATSLTFFPE------QD 242 (821)
Q Consensus 175 ~l~~L~~L~l~~~~i~~lp---~-l~~l~~L~~L~l~~~~~~~~l~~l~~l~--~L~~L~l~~~~~~~~~~~------~~ 242 (821)
++++|+.|++++|.++.++ . +..+++|+.|++++|.+... ..+..+. +|+.|++.+|...+.++. ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3444555555555444432 2 33445555555554443321 2222222 455555555542222221 22
Q ss_pred ccCCCCCCEee
Q 003421 243 LSKHQHLQMID 253 (821)
Q Consensus 243 l~~l~~L~~L~ 253 (821)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 44555665554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.31 E-value=0.048 Score=51.04 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=51.2
Q ss_pred CceeEEEecCC-Cccccc---cHHHHhcCcCCcEEEeecCCC-----CcccccccccccCCCCCCCccEEEcCCCCCCCC
Q 003421 74 DEVSTLLIDGD-RLRLEV---DEGFLARMKQLHALAIFNSGF-----KSLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNG 144 (821)
Q Consensus 74 ~~l~~L~l~~n-~~~~~~---~~~~~~~l~~L~~L~l~~~~~-----~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 144 (821)
+.|+.|+++++ .+...- -...+..-+.|+.|+|++|.+ ..+...+..-+. |++|+|+.|.+...
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~t-------L~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPS-------LRVLNVESNFLTPE 113 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSS-------CCEEECCSSBCCHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCc-------cCeEecCCCcCCHH
Confidence 57888888875 554211 123345567788888888887 345555556666 88888888877542
Q ss_pred c-----ccccCCCCccEEeccC
Q 003421 145 I-----GDIELLKKLTVLEISG 161 (821)
Q Consensus 145 ~-----~~i~~l~~L~~L~l~~ 161 (821)
- ..+..-+.|++|++++
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHHHhhCCceeEEECCC
Confidence 2 2344555677777764
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.67 E-value=0.084 Score=45.95 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=30.0
Q ss_pred EEeccCCcCCC--cCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEccCCCC
Q 003421 156 VLEISGANSVQ--KIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILRDCSS 211 (821)
Q Consensus 156 ~L~l~~~~~~~--~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~~~~~ 211 (821)
.++.++ +.++ .+|..+ ..+|++|+|++|.++.+|. |..+++|++|++.+|..
T Consensus 12 ~v~Cs~-~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCS-SCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCC-CCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 444444 3344 555432 2356666777776666665 56666666666666644
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.93 E-value=0.16 Score=44.07 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=21.4
Q ss_pred CccEEeccCCcCCCcCchHhhhCCCCccEEEecCCCC
Q 003421 153 KLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGCQM 189 (821)
Q Consensus 153 ~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~i 189 (821)
+|++|+|++ +.+..+|..+|..+++|++|+|.+|.+
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 455566655 345556666566666666666666654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.84 E-value=0.048 Score=51.04 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=35.1
Q ss_pred HHhcCcCCcEEEeecC-CCC-----cccccccccccCCCCCCCccEEEcCCCCCCCCc-----ccccCCCCccEEeccC
Q 003421 94 FLARMKQLHALAIFNS-GFK-----SLDLSSKTEKKSEPEKLPMKLLVLRSCNLLNGI-----GDIELLKKLTVLEISG 161 (821)
Q Consensus 94 ~~~~l~~L~~L~l~~~-~~~-----~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-----~~i~~l~~L~~L~l~~ 161 (821)
...+-+.|+.|+|+++ .++ .+...+..-.. |+.|+|++|.+...- ..+..-+.|++|+|++
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~-------L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKH-------IEKFSLANTAISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSC-------CCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCC-------cCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence 4455678888888875 662 23444444445 777777777664321 1233344555555555
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.70 E-value=40 Score=27.13 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=16.2
Q ss_pred cCchHhhhCCCCccEEEecCCCCCcCcC--cCCCCcccEEEcc
Q 003421 167 KIPDKLLDEMTKLQSLNLSGCQMKFLPS--LSKLFNLRFLILR 207 (821)
Q Consensus 167 ~lp~~~~~~l~~L~~L~l~~~~i~~lp~--l~~l~~L~~L~l~ 207 (821)
.+....|.+|.+|+.+.+..+ ++.+.. |..|.+|+.+.+.
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 333333444444444444332 233322 4444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=28.70 E-value=55 Score=26.29 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=31.7
Q ss_pred ccccCCCCccEEeccCCcCCCcCchHhhhCCCCccEEEecCC
Q 003421 146 GDIELLKKLTVLEISGANSVQKIPDKLLDEMTKLQSLNLSGC 187 (821)
Q Consensus 146 ~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~ 187 (821)
..|.+|.+|+.+.+-. .+..+....|.+|.+|+.+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 14 SLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred HHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCC
Confidence 4677888888888874 577788777888888888888764
No 167
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=20.89 E-value=61 Score=22.04 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=25.2
Q ss_pred ccccccccccccCC-----CC--cc-cccCCCCCCCCCCCC
Q 003421 789 LFKLPALTSLGFKI-----PD--AQ-IIKGCPKLPGSSSST 821 (821)
Q Consensus 789 l~~cp~L~~l~~~~-----~~--L~-~i~~Cp~L~~~~~~~ 821 (821)
++.||=|++.|..+ .. +. .+.+||-+..+++++
T Consensus 8 l~~CPFL~R~p~~fl~~~~~~~~ll~ya~rCPVm~~~~l~~ 48 (49)
T 1h7d_A 8 LRSCPVLSQGPTGLLGKVAKTYQFLFSIGRCPILATQGPTC 48 (49)
T ss_dssp CCSCCCCSSCSCSSCTTTTTHHHHHSSCSSCCSSCSCSCSC
T ss_pred hccCCchhcCCHHHHHhHHHHHHHHHhhccCCeeeeccccC
Confidence 56899999998852 33 33 789999999888763
Done!