BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003422
         (821 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2NVJ|A Chain A, Nmr Structures Of Transmembrane Segment From Subunit A
           From The Yeast Proton V-Atpase
          Length = 25

 Score = 43.9 bits (102), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/25 (76%), Positives = 22/25 (88%)

Query: 715 EFVLGAVSNTASYLRLWALSLAHSE 739
           EF L  VS+TASYLRLWALSLAH++
Sbjct: 1   EFCLNCVSHTASYLRLWALSLAHAQ 25


>pdb|2JTW|A Chain A, Solution Structure Of Tm7 Bound To Dpc Micelles
 pdb|2RPW|X Chain X, Structure Of A Peptide Derived From H+-V-Atpase Subunit A
          Length = 25

 Score = 40.0 bits (92), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/21 (85%), Positives = 21/21 (100%)

Query: 722 SNTASYLRLWALSLAHSELSS 742
           S+TASYLRLWALSLAH++LSS
Sbjct: 3   SHTASYLRLWALSLAHAQLSS 23


>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
 pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
          Length = 463

 Score = 30.4 bits (67), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 5/67 (7%)

Query: 540 LPFLNSL--KMKMSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYL 597
           L FL SL   +K +I   ++   +G++L +F  +   +G       IP  +FL S  G+L
Sbjct: 93  LTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFG---IPSYLFLTSNVGFL 149

Query: 598 SLLIILK 604
           SL++ LK
Sbjct: 150 SLMLSLK 156


>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
           With Udp-Glucose
 pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
           With Udp-Glucose
          Length = 465

 Score = 30.4 bits (67), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 5/67 (7%)

Query: 540 LPFLNSL--KMKMSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYL 597
           L FL SL   +K +I   ++   +G++L +F  +   +G       IP  +FL S  G+L
Sbjct: 93  LTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFG---IPSYLFLTSNVGFL 149

Query: 598 SLLIILK 604
           SL++ LK
Sbjct: 150 SLMLSLK 156


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,712,104
Number of Sequences: 62578
Number of extensions: 831455
Number of successful extensions: 1564
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1562
Number of HSP's gapped (non-prelim): 4
length of query: 821
length of database: 14,973,337
effective HSP length: 107
effective length of query: 714
effective length of database: 8,277,491
effective search space: 5910128574
effective search space used: 5910128574
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)