Query 003422
Match_columns 821
No_of_seqs 204 out of 960
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 23:08:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2189 Vacuolar H+-ATPase V0 100.0 5E-181 1E-185 1509.4 70.8 793 15-819 1-826 (829)
2 PF01496 V_ATPase_I: V-type AT 100.0 1E-134 3E-139 1222.1 11.0 745 40-814 1-759 (759)
3 PRK05771 V-type ATP synthase s 100.0 6.5E-98 1E-102 888.1 66.1 636 20-817 2-644 (646)
4 COG1269 NtpI Archaeal/vacuolar 100.0 2.7E-90 5.7E-95 815.8 58.2 634 19-820 1-658 (660)
5 PF14257 DUF4349: Domain of un 92.0 0.78 1.7E-05 49.2 9.6 97 24-139 95-191 (262)
6 PRK05771 V-type ATP synthase s 86.6 6.9 0.00015 47.6 13.1 93 101-225 213-306 (646)
7 COG1269 NtpI Archaeal/vacuolar 72.3 31 0.00067 42.2 12.0 37 192-228 287-323 (660)
8 PF03223 V-ATPase_C: V-ATPase 69.8 2E+02 0.0044 32.6 22.9 105 191-310 177-282 (371)
9 PF05767 Pox_A14: Poxvirus vir 63.4 36 0.00077 30.2 7.1 47 550-596 13-59 (92)
10 PF05377 FlaC_arch: Flagella a 61.5 33 0.00072 27.6 6.1 36 105-140 2-37 (55)
11 PF05667 DUF812: Protein of un 61.5 80 0.0017 38.0 12.2 44 106-149 345-388 (594)
12 PRK10692 hypothetical protein; 60.4 34 0.00075 30.0 6.4 49 550-608 12-60 (92)
13 PRK10884 SH3 domain-containing 58.8 55 0.0012 33.8 9.0 87 46-140 65-155 (206)
14 PF01496 V_ATPase_I: V-type AT 58.5 35 0.00077 42.4 9.1 25 193-217 289-313 (759)
15 cd00890 Prefoldin Prefoldin is 57.0 1.7E+02 0.0036 27.3 14.5 40 106-145 2-41 (129)
16 PRK11637 AmiB activator; Provi 56.3 1.2E+02 0.0026 34.9 12.4 8 401-408 315-322 (428)
17 PF10762 DUF2583: Protein of u 53.9 44 0.00095 29.2 6.0 49 550-608 12-60 (89)
18 PRK02302 hypothetical protein; 51.4 16 0.00035 32.3 3.2 52 19-71 31-82 (89)
19 PF09902 DUF2129: Uncharacteri 49.1 16 0.00035 31.0 2.7 38 19-56 25-62 (71)
20 PF06160 EzrA: Septation ring 49.0 2.1E+02 0.0045 34.4 13.1 48 270-317 182-229 (560)
21 cd00584 Prefoldin_alpha Prefol 47.9 2.4E+02 0.0052 26.4 14.2 40 106-145 2-41 (129)
22 KOG0964 Structural maintenance 44.0 7.9E+02 0.017 31.3 18.1 33 281-313 677-709 (1200)
23 PF08181 DegQ: DegQ (SacQ) fam 43.6 58 0.0013 24.3 4.4 39 103-141 4-42 (46)
24 PRK04778 septation ring format 41.6 4.6E+02 0.0099 31.5 14.5 33 269-301 185-217 (569)
25 PF04977 DivIC: Septum formati 41.3 75 0.0016 26.9 5.8 33 104-136 18-50 (80)
26 COG2433 Uncharacterized conser 41.1 64 0.0014 38.2 6.8 41 101-141 472-512 (652)
27 PRK11637 AmiB activator; Provi 40.8 1.2E+02 0.0026 34.9 9.2 24 111-134 90-113 (428)
28 PHA02562 46 endonuclease subun 39.7 29 0.00064 41.2 4.1 21 67-87 327-347 (562)
29 PF05377 FlaC_arch: Flagella a 39.0 1.7E+02 0.0037 23.6 6.9 47 284-334 2-48 (55)
30 PF10481 CENP-F_N: Cenp-F N-te 38.4 1.6E+02 0.0034 31.6 8.4 73 67-151 15-87 (307)
31 COG4471 Uncharacterized protei 37.5 45 0.00098 29.4 3.7 52 20-72 31-82 (90)
32 PF07106 TBPIP: Tat binding pr 36.7 2.4E+02 0.0051 28.0 9.4 92 31-132 30-138 (169)
33 COG1382 GimC Prefoldin, chaper 35.1 2.6E+02 0.0057 26.3 8.6 42 100-141 67-108 (119)
34 KOG2189 Vacuolar H+-ATPase V0 34.5 4.4E+02 0.0095 32.6 12.3 88 280-368 90-199 (829)
35 PRK13108 prolipoprotein diacyl 34.5 7.4E+02 0.016 29.0 14.1 22 474-495 136-158 (460)
36 PF08946 Osmo_CC: Osmosensory 34.4 76 0.0016 24.5 4.0 23 115-137 17-39 (46)
37 PRK10884 SH3 domain-containing 34.3 1.6E+02 0.0035 30.5 7.9 93 44-138 75-167 (206)
38 PF08946 Osmo_CC: Osmosensory 34.2 83 0.0018 24.2 4.1 30 104-133 13-42 (46)
39 PRK02886 hypothetical protein; 34.2 50 0.0011 29.2 3.5 38 19-56 29-66 (87)
40 PF06120 Phage_HK97_TLTM: Tail 33.1 1.2E+02 0.0026 33.3 7.0 52 35-89 56-107 (301)
41 PRK00888 ftsB cell division pr 32.5 1.1E+02 0.0024 28.1 5.7 36 104-139 28-63 (105)
42 COG3323 Uncharacterized protei 31.6 40 0.00086 31.0 2.5 34 22-55 3-36 (109)
43 PF10779 XhlA: Haemolysin XhlA 31.4 2.2E+02 0.0049 23.9 7.0 18 109-126 5-22 (71)
44 PF04949 Transcrip_act: Transc 31.3 4.9E+02 0.011 25.5 9.8 68 65-140 54-121 (159)
45 TIGR02209 ftsL_broad cell divi 31.2 1.4E+02 0.0031 25.7 6.1 43 105-147 26-68 (85)
46 COG1579 Zn-ribbon protein, pos 30.2 1.5E+02 0.0033 31.4 7.0 38 104-141 90-127 (239)
47 PRK10263 DNA translocase FtsK; 30.2 5.8E+02 0.013 33.8 13.1 18 550-567 26-43 (1355)
48 PF05529 Bap31: B-cell recepto 30.1 2E+02 0.0043 29.2 7.8 32 106-137 157-188 (192)
49 PF04102 SlyX: SlyX; InterPro 30.0 2.3E+02 0.0051 23.8 6.8 11 72-82 6-16 (69)
50 PF06005 DUF904: Protein of un 29.9 2.4E+02 0.0052 24.1 6.9 27 113-139 7-33 (72)
51 PF10805 DUF2730: Protein of u 29.5 3.8E+02 0.0081 24.6 8.7 60 70-139 42-101 (106)
52 COG3388 Predicted transcriptio 29.4 1.8E+02 0.0039 26.1 6.1 55 78-135 44-98 (101)
53 KOG4603 TBP-1 interacting prot 28.6 4.8E+02 0.01 26.1 9.4 53 102-154 115-169 (201)
54 PF10779 XhlA: Haemolysin XhlA 28.1 2.2E+02 0.0049 23.9 6.5 45 105-149 8-52 (71)
55 PF10046 BLOC1_2: Biogenesis o 28.0 4.5E+02 0.0098 23.7 9.8 26 117-142 66-91 (99)
56 TIGR02338 gimC_beta prefoldin, 27.9 1.5E+02 0.0033 27.2 5.9 38 102-139 66-103 (110)
57 PHA02898 virion envelope prote 27.8 2.4E+02 0.0053 25.0 6.5 45 550-594 13-57 (92)
58 PF01920 Prefoldin_2: Prefoldi 27.7 2.1E+02 0.0045 25.5 6.8 38 102-139 61-98 (106)
59 TIGR03185 DNA_S_dndD DNA sulfu 27.7 3E+02 0.0064 33.7 10.0 39 103-141 421-459 (650)
60 PRK14127 cell division protein 27.7 2.3E+02 0.0051 26.2 6.9 42 100-141 20-61 (109)
61 PF04102 SlyX: SlyX; InterPro 27.3 2.8E+02 0.0061 23.3 6.9 35 105-139 6-40 (69)
62 PF04111 APG6: Autophagy prote 27.3 1.3E+02 0.0029 33.2 6.3 28 114-141 61-88 (314)
63 PF04123 DUF373: Domain of unk 27.0 7.5E+02 0.016 27.8 12.0 85 402-488 150-243 (344)
64 PF03962 Mnd1: Mnd1 family; I 26.7 6.9E+02 0.015 25.4 11.8 23 34-56 30-52 (188)
65 cd00632 Prefoldin_beta Prefold 26.6 4E+02 0.0086 24.1 8.4 39 101-139 61-99 (105)
66 PF07666 MpPF26: M penetrans p 26.6 2.9E+02 0.0063 26.4 7.5 81 403-487 39-120 (130)
67 smart00338 BRLZ basic region l 26.3 1.9E+02 0.0041 23.8 5.6 35 104-138 27-61 (65)
68 PF13256 DUF4047: Domain of un 26.2 4.9E+02 0.011 24.5 8.5 43 101-143 55-97 (125)
69 COG3937 Uncharacterized conser 26.0 2.7E+02 0.0058 25.7 6.7 26 101-126 81-106 (108)
70 PF04728 LPP: Lipoprotein leuc 25.9 2.9E+02 0.0062 22.5 6.2 34 105-138 5-38 (56)
71 cd04776 HTH_GnyR Helix-Turn-He 25.8 4.3E+02 0.0093 24.6 8.6 34 106-139 76-109 (118)
72 COG4839 FtsL Protein required 25.6 1.5E+02 0.0033 27.7 5.3 44 105-148 62-105 (120)
73 PRK02793 phi X174 lysis protei 25.4 3.7E+02 0.008 22.9 7.3 50 70-138 8-57 (72)
74 PF14193 DUF4315: Domain of un 25.2 2.3E+02 0.0051 24.9 6.1 35 105-139 3-37 (83)
75 PF02346 Vac_Fusion: Chordopox 25.2 3.6E+02 0.0078 22.0 6.7 43 104-146 2-44 (57)
76 PF11348 DUF3150: Protein of u 25.1 2.3E+02 0.0049 30.4 7.4 64 253-322 55-118 (257)
77 PLN02939 transferase, transfer 25.0 8.9E+02 0.019 31.1 13.3 67 247-319 321-388 (977)
78 PF11221 Med21: Subunit 21 of 24.9 3.8E+02 0.0083 25.9 8.3 37 278-314 100-136 (144)
79 PF10224 DUF2205: Predicted co 24.8 3.3E+02 0.0071 23.8 6.9 35 107-141 27-61 (80)
80 TIGR00293 prefoldin, archaeal 24.5 1.8E+02 0.0038 27.2 5.8 39 106-144 2-40 (126)
81 PF06005 DUF904: Protein of un 24.4 3.2E+02 0.007 23.3 6.7 41 105-145 6-46 (72)
82 PF00170 bZIP_1: bZIP transcri 24.3 2.7E+02 0.0058 22.8 6.2 33 105-137 28-60 (64)
83 COG1315 Uncharacterized conser 24.0 2E+02 0.0043 33.6 6.9 70 64-140 414-484 (543)
84 PF05610 DUF779: Protein of un 23.9 41 0.0009 30.1 1.2 12 10-26 19-30 (95)
85 PRK00736 hypothetical protein; 23.8 3.4E+02 0.0073 22.8 6.6 34 105-138 7-40 (68)
86 COG1730 GIM5 Predicted prefold 23.6 7E+02 0.015 24.4 15.1 43 103-145 6-48 (145)
87 COG5374 Uncharacterized conser 23.6 4.2E+02 0.0091 26.7 8.2 41 102-142 142-182 (192)
88 PRK10869 recombination and rep 23.2 5.1E+02 0.011 31.0 10.7 44 70-125 296-339 (553)
89 COG3564 Uncharacterized protei 23.0 38 0.00083 30.2 0.9 13 10-27 33-45 (116)
90 PRK04863 mukB cell division pr 23.0 1.3E+03 0.028 31.3 15.0 50 99-148 431-480 (1486)
91 PF01102 Glycophorin_A: Glycop 22.6 82 0.0018 29.8 3.0 13 423-435 67-79 (122)
92 PF10958 DUF2759: Protein of u 22.5 2.4E+02 0.0052 22.5 5.0 33 564-601 10-42 (52)
93 KOG2264 Exostosin EXT1L [Signa 22.4 2E+02 0.0044 33.8 6.5 27 384-411 447-477 (907)
94 COG5185 HEC1 Protein involved 22.3 1.3E+03 0.028 27.0 16.6 34 102-135 329-362 (622)
95 PRK00295 hypothetical protein; 22.2 3.8E+02 0.0082 22.5 6.6 33 105-137 7-39 (68)
96 PRK09343 prefoldin subunit bet 22.1 5.6E+02 0.012 24.0 8.6 40 100-139 68-107 (121)
97 PF06156 DUF972: Protein of un 22.0 2.7E+02 0.0059 25.7 6.3 38 107-144 5-42 (107)
98 PRK00295 hypothetical protein; 21.8 4.9E+02 0.011 21.9 7.8 14 71-84 6-19 (68)
99 PF05278 PEARLI-4: Arabidopsis 21.6 2.9E+02 0.0064 29.7 7.2 49 103-151 207-255 (269)
100 KOG2909 Vacuolar H+-ATPase V1 21.6 1.2E+03 0.025 26.2 22.4 85 106-220 124-208 (381)
101 COG3096 MukB Uncharacterized p 21.6 7.9E+02 0.017 30.3 11.1 219 59-334 1015-1259(1480)
102 PRK03947 prefoldin subunit alp 21.5 7E+02 0.015 23.7 14.2 38 104-141 7-44 (140)
103 PF05529 Bap31: B-cell recepto 21.5 1.6E+02 0.0035 29.8 5.2 32 110-141 154-185 (192)
104 KOG2829 E2F-like protein [Tran 21.1 9.3E+02 0.02 26.2 10.6 112 13-129 40-158 (326)
105 PRK04325 hypothetical protein; 21.1 3.9E+02 0.0085 22.8 6.6 18 119-136 32-49 (74)
106 PF00261 Tropomyosin: Tropomyo 21.0 3.3E+02 0.0071 28.7 7.6 8 72-79 94-101 (237)
107 KOG0353 ATP-dependent DNA heli 21.0 1.6E+02 0.0035 32.9 5.2 45 104-148 5-49 (695)
108 PF08614 ATG16: Autophagy prot 21.0 7.3E+02 0.016 25.1 9.9 34 107-140 134-167 (194)
109 KOG0971 Microtubule-associated 20.9 3.7E+02 0.0079 33.7 8.5 39 69-111 338-376 (1243)
110 PF11023 DUF2614: Protein of u 20.6 2.9E+02 0.0064 25.7 6.0 17 725-741 8-24 (114)
111 TIGR01834 PHA_synth_III_E poly 20.6 2.9E+02 0.0062 30.6 7.1 31 101-131 287-317 (320)
112 PF12958 DUF3847: Protein of u 20.6 2.6E+02 0.0055 24.8 5.5 34 104-137 2-35 (86)
113 TIGR02449 conserved hypothetic 20.5 4.8E+02 0.01 21.9 6.7 38 105-142 2-39 (65)
114 PF02403 Seryl_tRNA_N: Seryl-t 20.3 3E+02 0.0064 24.9 6.3 32 104-135 68-99 (108)
115 PF04156 IncA: IncA protein; 20.2 2.3E+02 0.005 28.5 6.1 18 70-87 95-112 (191)
116 PF11471 Sugarporin_N: Maltopo 20.1 2.2E+02 0.0047 23.5 4.6 28 279-306 29-56 (60)
117 PF11471 Sugarporin_N: Maltopo 20.0 2E+02 0.0042 23.7 4.3 30 107-136 29-58 (60)
118 COG0497 RecN ATPase involved i 20.0 7.8E+02 0.017 29.5 10.9 23 70-92 297-319 (557)
No 1
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=100.00 E-value=5.3e-181 Score=1509.35 Aligned_cols=793 Identities=53% Similarity=0.885 Sum_probs=699.5
Q ss_pred CCCccccccCceEEEEeccCcHHHHHHHHhccCcEEEecCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 003422 15 PMDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSS 94 (821)
Q Consensus 15 ~~s~fRSe~M~~~~Li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~r~~~~~v~rceE~e~kl~fl~~~l~k~~i~~~ 94 (821)
|+||||||+|+++|+++|.|.|++||++||++|+|||+|||+++++|||.|++++|||||||||+||++++++|.+++.+
T Consensus 1 ~~s~fRSE~M~L~Ql~l~~eaAy~~vaeLGelGlvqFrDLN~~v~afQR~fv~evrRcdemeRklrfl~~ei~k~~i~~~ 80 (829)
T KOG2189|consen 1 MGSLFRSEEMCLVQLFLQSEAAYQCVAELGELGLVQFRDLNPDVSAFQRKFVNEVRRCDEMERKLRFLESEIKKAGIPLP 80 (829)
T ss_pred CccccccccceeeEEEecHHHHHHHHHHhhccCeeEeeeCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred ---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhhhhhhccCC
Q 003422 95 ---VKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGE 171 (821)
Q Consensus 95 ---~~~~~~~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 171 (821)
+.++.|...+++++|++++++|+|+++++++.++|+++.+++.|++++|+++.+||+.......+ .+.. ..
T Consensus 81 ~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~~vl~~t~~Ff~~~~~~~~~--~~~~--~~-- 154 (829)
T KOG2189|consen 81 DLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLELKYVLEKTDEFFSTSVQESFE--DDET--AD-- 154 (829)
T ss_pred CccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhc--chhh--hh--
Confidence 45567788999999999999999999999999999999999999999999999999852211000 0000 00
Q ss_pred CCcCCCCccccccCCCCCCcceEEEEEEEEcCCchHHHHHHHHHhhcCcEEEEeeccCCccccCCCCcccceEEEEEEEe
Q 003422 172 MTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYS 251 (821)
Q Consensus 172 ~~~~~pLl~~~e~~~~~~~~~~~~~~~G~I~~~~~~~f~~~l~r~~~gn~~~~~~~i~~~~~~~~~~~~~~k~v~vi~~~ 251 (821)
....++... + ..+....++++++|+|++++...|+|.|||+||||+|++..++++++.||.+|+.++|+||+|+++
T Consensus 155 -~~~~~~~~~-~--~~~~~~~~l~FvaGvI~r~k~~~fER~LWRa~Rgn~f~r~~~ie~~l~dp~Tge~~~K~vFivF~~ 230 (829)
T KOG2189|consen 155 -LGEGPLESA-E--KGPFDGLKLGFVAGVINREKVFAFERMLWRACRGNLFIRQSDIEEPLEDPKTGEPVEKNVFIVFFQ 230 (829)
T ss_pred -hcccccchh-c--cCCCCcccceeEEeeechhHHHHHHHHHHHHhccceEEEeecccccccCCccCCcceeEEEEEEee
Confidence 000111111 0 012234589999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHhhhccCcEEeeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003422 252 GERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYH 331 (821)
Q Consensus 252 ~~~~~~~v~~i~~~~~~~~~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~ 331 (821)
|+....||+|||++|+++.|++|+++..+++.+.+++.+++|++..+.++++.+.+.+....+.+..|...++|+|++|+
T Consensus 231 Geql~~kIkKIcd~f~a~~yp~p~~~~er~~~~~~v~~ri~DL~~Vl~~t~~~r~~vL~~~~~~l~~W~~~v~K~KaIyh 310 (829)
T KOG2189|consen 231 GEQLKQKIKKICDGFGATLYPCPESPEERKEMLLEVNTRISDLQTVLDQTEDHRSRVLQAAAKNLPSWLIKVRKEKAIYH 310 (829)
T ss_pred cHHHHHHHHHHHhccCcEeecCCCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccccCcEEEEEEEeeccchh--HHHHHhHhhcCCCceEEEEEecCCCCCCCcccccCccchhHHHHHHhhcCCC
Q 003422 332 TLNMLSLDVTKKCLVGEGWSPVFATK--QDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAK 409 (821)
Q Consensus 332 ~l~~~~~~~t~~~~~~~GWvP~~~~~--~~~L~~~~~~~~~~~~~~~~~~~~~~~pPt~l~n~~~~~pFe~lv~~Yg~P~ 409 (821)
+||++++|.|+++++.|||||..+.+ +++|++.+.++|.+++.+++.++.++.||||+|+|||+++||.|||.||+++
T Consensus 311 tLN~fn~Dvt~KCLIaE~W~P~~dl~~vq~aL~~~~~~sgS~v~~i~nv~~T~e~PPTy~RTNKFT~~FQ~IvDaYGVa~ 390 (829)
T KOG2189|consen 311 TLNMFNFDVTQKCLIAEGWCPVADLPDLQRALERGSEESGSQVPSILNVMETNEMPPTYFRTNKFTAGFQNIVDAYGVAS 390 (829)
T ss_pred HHhccCccccCceEEEEeecchhhHHHHHHHHHHhhhhcCCcchhhHhheecCCCCCcchhcchhhHHHHHHHHhccccc
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCcchhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhhhcccc-ccchhhhchhhHHHHHHHHHHHHHHHHHhc
Q 003422 410 YREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQK-LDDITDMTFGGRYVILMMALFSIYTGLIYN 488 (821)
Q Consensus 410 Y~EiDPt~~~~i~fp~fFG~MfgD~GyGlll~l~~~~l~~~~~~~~~~~-~~~~~~~~~~~r~il~~~gi~si~~G~lyg 488 (821)
|+|+||+|++.|||||+|++||||+|||++|+++|+|+++++||+..++ .+++++|+|.||||+++||++|||+|++||
T Consensus 391 YrEvNPa~yTiITFPFLFAVMFGD~GHG~imlL~al~~Vl~Ekkl~~~k~~~EI~~mfF~GRYIIlLMGlFSiYTGliYN 470 (829)
T KOG2189|consen 391 YREVNPAPYTIITFPFLFAVMFGDLGHGLIMLLAALWMVLNEKKLASQKIGDEIFNMFFGGRYIILLMGLFSIYTGLIYN 470 (829)
T ss_pred ccccCCCceeEeehHHHHHHHhcccchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999988765 459999999999999999999999999999
Q ss_pred cccccccccccccccccccCCC----Ccccc---cccccccCcccccccCCCcCCCCCccccchhhHHHHHHHHHHHHHH
Q 003422 489 EFFSVPFEIFSHSAYACRDLSC----SEATT---VGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNL 561 (821)
Q Consensus 489 ~fFG~~~~~fg~s~~~~~~~~~----~~~~~---~g~~~~~~~~~fg~dp~~~~~~~~l~f~n~~~m~~si~iGv~~~~~ 561 (821)
|+|+.++++|| |+|.++.... .+... .+..+.+.|||||+||+|+.+.|+|.|+||+|||+||++|++||++
T Consensus 471 D~FSks~niFg-S~W~~~~~~~~~~~~e~~~~p~~~~~~~~gpYPfGvDPiW~~a~N~L~FLNS~KMKmSIIlGi~hM~f 549 (829)
T KOG2189|consen 471 DFFSKSMNIFG-SSWSNPYNVTAVLCSEALLTPEIGGAKFGGPYPFGVDPIWHLADNKLSFLNSMKMKMSIILGIIHMTF 549 (829)
T ss_pred hhccccccccc-CcccCccccchhccccccccCCCCcccccCCCCCcCChhhhcccccchhhhhhHHHHHHHHHHHHHHH
Confidence 99999999996 9998874432 11111 1111234589999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh------cCchhHHHHHHHhhcCCCCCCCCCccCC
Q 003422 562 GIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWIT------GSQADLYHVMIYMFLSPTDELGDNQLFP 635 (821)
Q Consensus 562 g~~l~~~n~~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~w~~------~~~p~l~~~~i~~~l~~~~~~~~~~~~~ 635 (821)
|++++..|++++|++.|++++++||++|+.|+||||+++|+|||+. .++||+++++|||||.|+.. .+..+||
T Consensus 550 Gv~lS~~N~~~Fk~~~~I~~~FIPq~iFl~~iFgYL~~~IiyKW~~~~~~~~~~aPslLi~lInMFl~~~~~-~~~~lyp 628 (829)
T KOG2189|consen 550 GVILSVFNHIYFKSKLDIILVFIPQLIFLLSLFGYLVFLIIYKWLVFWAKTSNCAPSLLIMLINMFLFPGTD-AGFQLYP 628 (829)
T ss_pred HHHHHHHHHHHhccchheeeeccHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCchHHHHHHHHHhCCCCC-CccccCC
Confidence 9999999999999999999999999999999999999999999995 35899999999999999862 2238999
Q ss_pred chhhHHHHHHHHHHHhhhhhccchhhhhhhccccc----ccccccccccccccCCC--C---CCCC--CCCCCccchhHH
Q 003422 636 GQKTAQLVLLLLAFVSVPWMLLPKPFILKMQHQDR----HQGQSYEALQSTDESLQ--P---DTNH--DSHGHEEFEFSE 704 (821)
Q Consensus 636 g~~~~~~~l~~~~~~~v~~~l~~~pl~~~~~~~~~----~~g~~~~~~~~~~~~~~--~---~~~~--~~~~~~~~~~~e 704 (821)
||..+|.++++++++||||||++||++++++|+++ ++++.+.....+++... . ++.+ +.++++++++||
T Consensus 629 ~Q~~vQ~~ll~~Al~cVPwmLl~KPl~l~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~fse 708 (829)
T KOG2189|consen 629 GQKQVQLILLVLALVCVPWMLLGKPLYLRRRHKNRLRERHQGQSAGRLDSTDGSVHGPTSDAEDGGGVGDGEEEEFEFSE 708 (829)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcchHHHHHHhhhccccccccchhcccccccccccCCccccccCCCCCCCCcCccchhh
Confidence 99999999999999999999999999998877654 11222221111111100 0 0111 113455789999
Q ss_pred HHHHHHHHHHHHHhhhchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCc---hhhHHHHHHHHHHHHHHHHHHHhh
Q 003422 705 VFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNN---ILILIVGIIVFIFATVGVLLVMET 781 (821)
Q Consensus 705 ~~i~~~i~~ie~vl~~~sntlSYlRL~Al~LAh~~La~v~~~~~~~~~~~~~~---~~~~i~~~~v~~~~~~~i~~~me~ 781 (821)
++|||+|||||+||||+|||+||+||||||||||||++|+|+|++.++++.++ .+++++.+.+|+++|++|+++|||
T Consensus 709 I~iHQaIHTIEf~LgcVShTASYLRLWALSLAHAQLSeVLW~Mvl~~g~~~~~~~g~i~~~~if~~f~~lTv~ILv~MEG 788 (829)
T KOG2189|consen 709 IFIHQAIHTIEFVLGCVSHTASYLRLWALSLAHAQLSEVLWTMVLRIGLGLGGYVGVIGLVALFGVFAVLTVAILVLMEG 788 (829)
T ss_pred HHhhhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999988876433 222334444667779999999999
Q ss_pred hHhHHhhhhhhheeecccccccCCeecccccccccCCc
Q 003422 782 LSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFALLDDE 819 (821)
Q Consensus 782 L~~fvH~LRL~~vEFf~KFy~G~G~~F~Pf~~~~~~~~ 819 (821)
||||+||||||||||+||||+|+|++|.||+++.++++
T Consensus 789 LSAfLHaLRLHWVEFqsKFy~G~Gy~F~PFsF~~~~~~ 826 (829)
T KOG2189|consen 789 LSAFLHALRLHWVEFQSKFYEGTGYKFEPFSFKLILDE 826 (829)
T ss_pred HHHHHHHHHHHHHHHhhhhcCCCCcccccceeehhhhh
Confidence 99999999999999999999999999999999998874
No 2
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=100.00 E-value=1.4e-134 Score=1222.08 Aligned_cols=745 Identities=45% Similarity=0.750 Sum_probs=150.5
Q ss_pred HHHHhccCcEEEecCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---CCCCCCCCCCHHHHHHHHHHHH
Q 003422 40 VSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSS---VKSTTRADNNTDDLEVKLGDLE 116 (821)
Q Consensus 40 v~~Lg~lg~Vqf~Dln~~~~~~~r~~~~~v~rceE~e~kl~fl~~~l~k~~i~~~---~~~~~~~~~~l~eLe~~l~~le 116 (821)
|++||++|+|||+|+|++.+.++|+|+++++||||++|+++++++++++.++... .....+....++++++++++++
T Consensus 1 V~eLgelG~VqF~Dln~~~~~fqr~f~~ev~r~de~erkL~~le~~I~k~~~~~~~~~~~~~~~~~~~i~~le~~l~~le 80 (759)
T PF01496_consen 1 VNELGELGLVQFRDLNEDVSAFQRKFVNEVRRCDEMERKLRFLEEEIKKLKIPLPEKNDKPDAPKPKEIDELEEELEELE 80 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhhcCCcEEEEECccchhHHHHHhhhccccHHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999998775543 1122334457899999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhhhhhhccCCCCcCCCCccccccCCCCCCcceEE
Q 003422 117 AELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSAL-TSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLG 195 (821)
Q Consensus 117 ~~l~~l~~~~~~L~~~~~eL~e~~~vL~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~pLl~~~e~~~~~~~~~~~~ 195 (821)
+++++++++.++|++++++++|++++|++..+.++... ... .... .++ .+...+. +....+++
T Consensus 81 ~~l~e~~~~~e~L~~~~~~L~E~~~~L~~~~~~l~~~~~~~l----~~~~----~l~-~~~~~l~-------~~~~~~~~ 144 (759)
T PF01496_consen 81 EELRELNENLEKLEEELNELEEEKNVLEEEIEFLEELKLEEL----EPWK----NLD-IDLEELE-------SSKFLNLG 144 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----hhhh----hcc-cchhhhc-------cccceeee
Confidence 99999999999999999999999999999888776421 000 0000 000 0111111 11234566
Q ss_pred EEEEEEcCCchHHHHHHHHHhhcCcEEEEeeccCCccccCCCCcccceEEEEEEEeChhhHHHHHHhhhccCcEEeeCCC
Q 003422 196 FIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYSGERAKNKILKICDAFGANRYPFNE 275 (821)
Q Consensus 196 ~~~G~I~~~~~~~f~~~l~r~~~gn~~~~~~~i~~~~~~~~~~~~~~k~v~vi~~~~~~~~~~v~~i~~~~~~~~~~~p~ 275 (821)
+++|+||+++.++|++.++|++++|+|++..+++++..|+. +..++.+|++++++++.+++++++|+++||+++++|+
T Consensus 145 f~~G~I~~~~~~~f~~~l~r~~~~N~fi~~~~Ie~~~~d~~--e~~~k~v~vv~~~~~~~~~kv~~il~~~~f~~~~~p~ 222 (759)
T PF01496_consen 145 FIAGVIPREKIESFERILWRATRGNIFIRFSEIEEILEDPK--EEVEKEVFVVFFSGKELEEKVKKILRSFGFERYDLPE 222 (759)
T ss_dssp -------HHHHHHHHHHHHHHHTT-----S------EEEE---EE-SSSEEEEEEEEGGGHHHHHHHHHTTT--B----G
T ss_pred EEEEEEehhhHHHHHHHHHHhccCCeEEEEEeeeccccccc--ceeeeeeEEEEEEchhhHHHHHHHhhccCceecCCCC
Confidence 79999999999999999999999999999988888887765 4456789999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccC-cEEEEEEEeecc
Q 003422 276 EFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNMLSLDVTK-KCLVGEGWSPVF 354 (821)
Q Consensus 276 ~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~~l~~~~~~~t~-~~~~~~GWvP~~ 354 (821)
..++|++.++++++++++++++++++++++++.++++.+.+..|+..+++++++|++++.+ ..++ ++++++||||++
T Consensus 223 ~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~GWvP~~ 300 (759)
T PF01496_consen 223 DEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLRKEKEIYEALNKF--ASTETNVFILEGWVPEK 300 (759)
T ss_dssp GGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTT---SEEEEEEE-TT
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccEEEEEEeccHH
Confidence 8889999999999999999999999999999999999999999999999999999999954 4455 899999999999
Q ss_pred chh--HHHHHhHhhcCCCceEEEEEecCCCCCCCcccccCccchhHHHHHHhhcCCCCCccCCcchhhHHHHHHHHHHhh
Q 003422 355 ATK--QDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFG 432 (821)
Q Consensus 355 ~~~--~~~L~~~~~~~~~~~~~~~~~~~~~~~pPt~l~n~~~~~pFe~lv~~Yg~P~Y~EiDPt~~~~i~fp~fFG~Mfg 432 (821)
+.+ ++.|++.+.+....+....++++++++|||+++||+|++|||.+|+|||+|+|+|+||||++++|||+|||||||
T Consensus 301 ~~~~l~~~l~~~~~~~~~~v~~~~~~~~~~~~pPt~lknn~~~~pFe~iv~~Yg~P~Y~EiDPt~~~ai~fp~fFG~MfG 380 (759)
T PF01496_consen 301 DVEELKKALEEATDGSEYSVPSIEEEPEEEEEPPTKLKNNKFTKPFEMIVDMYGLPKYREIDPTPFMAITFPFFFGMMFG 380 (759)
T ss_dssp THHHHHHT--SS-EEEE---------------------------------------------------------------
T ss_pred HHHHHHHHHHhhccccccccccccccccccCCCCeeecCchhhhHHHHHHHhcCCCCCCccccchHHHHHHHHHHHHHHh
Confidence 999 777777554322112223344556789999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhhccccccchhhhchhhHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCCCc
Q 003422 433 DWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHSAYACRDLSCSE 512 (821)
Q Consensus 433 D~GyGlll~l~~~~l~~~~~~~~~~~~~~~~~~~~~~r~il~~~gi~si~~G~lyg~fFG~~~~~fg~s~~~~~~~~~~~ 512 (821)
|+|||++++++|++++++.++.++.+ ++++++++++||++++||++|||||++||||||.++++|+ ++|.+.... ..
T Consensus 381 D~GyGlll~l~~l~l~~~~~~~~~~~-~e~~~~~~~~~~il~~~gi~si~~G~iyg~~FG~~~~~f~-~~~~~~~~~-~~ 457 (759)
T PF01496_consen 381 DAGYGLLLLLFGLLLIKKFKKLKKMK-NEIFNMLFKLRYILLLMGISSIIFGFIYGSFFGDSLNIFG-SGWNWPMNI-KE 457 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHhccccchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCcchhcC-ccccccccc-cC
Confidence 99999999999999998766665544 7899999999999999999999999999999999999995 788764210 00
Q ss_pred ccccccccccCcccccccCCCcCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhhhHHHHHHH
Q 003422 513 ATTVGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNS 592 (821)
Q Consensus 513 ~~~~g~~~~~~~~~fg~dp~~~~~~~~l~f~n~~~m~~si~iGv~~~~~g~~l~~~n~~~~~~~~~~~~~~~~~~l~~~~ 592 (821)
+.........++||||+||.|+...|++.|.||++|++|+++|++||++|++++++|++|+|++.|++.+++|+++++++
T Consensus 458 ~~~~~~~~~~~~yp~g~dp~~~~~~n~l~f~ns~~m~~SiiiGvi~m~~G~~l~~~n~i~~~~~~d~~~~~~~~~~~~~~ 537 (759)
T PF01496_consen 458 GESITLAPSVGPYPFGIDPIWNPATNELLFLNSFKMKLSIIIGVIHMLFGLILKIINNIRFKDKIDIFFAFIPQLLFLIS 537 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceeeccCccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhhhcchHHHHHHH
Confidence 00000001124799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc------CchhHHHHHHHhhcCCCCCCCCCccCCchhhHHHHHHHHHHHhhhhhccchhhhhhhc
Q 003422 593 LFGYLSLLIILKWITG------SQADLYHVMIYMFLSPTDELGDNQLFPGQKTAQLVLLLLAFVSVPWMLLPKPFILKMQ 666 (821)
Q Consensus 593 ~~g~l~~~i~~~w~~~------~~p~l~~~~i~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~v~~~l~~~pl~~~~~ 666 (821)
++|||+++|++||++. .+|++++++|+|++.||.. .++|+||..+|.++++++++|||||++.||++.+++
T Consensus 538 l~Gyl~~li~~kw~~~~~~~~~~~p~il~~li~m~l~~~~~---~~~~~~q~~~~~~l~~~~~~~vp~~l~~~p~~~~~~ 614 (759)
T PF01496_consen 538 LFGYLVFLIIYKWLTPWFADSICAPSILIGLINMFLFPGTV---QPLYPGQSTVQVILLLIALISVPWMLLPKPLILKRK 614 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhhhcccCCchHHHHHHHhhcCCCCh---hhhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999983 4799999999999999853 789999999999999999999999999999998877
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHhhhhHHHHHHHHH
Q 003422 667 HQDRHQGQSYEALQSTDESLQPDTNHDSHGHEEFEFSEVFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYE 746 (821)
Q Consensus 667 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~~i~~ie~vl~~~sntlSYlRL~Al~LAh~~La~v~~~ 746 (821)
+++.. ....+.+.++.+... .++.+.++++++||++|||+|++||+++|++|||+||+|||||||||++||.|||.
T Consensus 615 ~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~sy~Rl~a~~la~~~l~~~~~~ 690 (759)
T PF01496_consen 615 HKKKQ---EKEDLLEEEEEESES-QEDEEEHEEFDFGEIFIHQGIETIEFVLGCISNTLSYLRLWALSLAHAQLSEVFNE 690 (759)
T ss_dssp --------------------------------------------------SSSTTTTCHHHHHCHHHHCHHHHCCS----
T ss_pred hhhhc---ccccccccccccccc-ccccccccchhHHHHHHHHHHHHHHHHHhhhcchHhHHHHHHHhhhHHHHHHHHHH
Confidence 66531 001111111111011 11222356678999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCc-hhhHHHHHHHHHHHHHHHHHHHhhhHhHHhhhhhhheeecccccccCCeeccccccc
Q 003422 747 KVLLLAWGYNN-ILILIVGIIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFA 814 (821)
Q Consensus 747 ~~~~~~~~~~~-~~~~i~~~~v~~~~~~~i~~~me~L~~fvH~LRL~~vEFf~KFy~G~G~~F~Pf~~~ 814 (821)
|+.+.+.+.++ +++.++++++++++++.++++||+|+||||+|||||||||||||+|+|++|+||+++
T Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lRL~~~E~~~kfy~g~g~~f~p~~~~ 759 (759)
T PF01496_consen 691 MALMLGLSSGGVPIAGIIGFIIIAILGHAILIGMEGLSAFLHALRLHWVEFFSKFYEGGGRPFEPFSFK 759 (759)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCeecCCCCCC
Confidence 99987765554 444455555566667779999999999999999999999999999999999999975
No 3
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=100.00 E-value=6.5e-98 Score=888.06 Aligned_cols=636 Identities=23% Similarity=0.301 Sum_probs=469.4
Q ss_pred ccccCceEEEEeccCcHHHHHHHHhccCcEEEecCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 003422 20 RSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTT 99 (821)
Q Consensus 20 RSe~M~~~~Li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~r~~~~~v~rceE~e~kl~fl~~~l~k~~i~~~~~~~~ 99 (821)
++++|+|++++++++.+++++++||++|+||++|.+.+.+.. ...+..++++++.+.++++++..++.+.... ...+
T Consensus 2 ~i~kM~kv~l~~~~~~~~~~l~~L~~lg~vhi~~~~~~~~~~--~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~-~~~~ 78 (646)
T PRK05771 2 APVRMKKVLIVTLKSYKDEVLEALHELGVVHIEDLKEELSNE--RLRKLRSLLTKLSEALDKLRSYLPKLNPLRE-EKKK 78 (646)
T ss_pred CceeeEEEEEEEEHHHHHHHHHHHHhCCCEEEeecccccchh--HHhHHHHHHHHHHHHHHHHHHhccccccchh-hhcc
Confidence 689999999999999999999999999999999998765422 1234456677788888888887776553321 1112
Q ss_pred CCCCCHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhhhhhhccCCCCcC
Q 003422 100 RADNNTDDL----EVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIE 175 (821)
Q Consensus 100 ~~~~~l~eL----e~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (821)
.+..+.+++ ++.++++++++.++.+++++|+++++++++....|++.+++ +
T Consensus 79 ~~~~~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~~~l-d------------------------ 133 (646)
T PRK05771 79 VSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNF-D------------------------ 133 (646)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-C------------------------
Confidence 233344433 55677778888888888888888888887777665554443 1
Q ss_pred CCCccccccCCCCCCcceEEEEEEEEcCCchHHHHHHHHHhhcCcEEEEeeccCCccccCCCCcccceEEEEEEEeChhh
Q 003422 176 TPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYSGERA 255 (821)
Q Consensus 176 ~pLl~~~e~~~~~~~~~~~~~~~G~I~~~~~~~f~~~l~r~~~gn~~~~~~~i~~~~~~~~~~~~~~k~v~vi~~~~~~~ 255 (821)
.++.. -...+++.+++|++|+++.++.+. .....++.. . .+.++.++++++++++.
T Consensus 134 ~~l~~-------~~~~~~~~~~~G~i~~~~~~~~~~-----~~~~~~~~~----------~--~~~~~~~~~vvv~~~~~ 189 (646)
T PRK05771 134 LDLSL-------LLGFKYVSVFVGTVPEDKLEELKL-----ESDVENVEY----------I--STDKGYVYVVVVVLKEL 189 (646)
T ss_pred CCHHH-------hCCCCcEEEEEEEecchhhhhHHh-----hccCceEEE----------E--EecCCcEEEEEEEEhhh
Confidence 22210 011458999999999988876321 111111111 0 01135677787878888
Q ss_pred HHHHHHhhhccCcEEeeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003422 256 KNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNM 335 (821)
Q Consensus 256 ~~~v~~i~~~~~~~~~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~~l~~ 335 (821)
.+++.++|++++|+++++|. .++|++.++++++++++++++++++++++++..++....+..|+..+..+++.+++++
T Consensus 190 ~~~~~~~l~~~~f~~~~~p~-~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 267 (646)
T PRK05771 190 SDEVEEELKKLGFERLELEE-EGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALS- 267 (646)
T ss_pred HHHHHHHHHHCCCEEecCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999998 8899999999999999999999999999999998888888889999999999999998
Q ss_pred ccccccCcEEEEEEEeeccchh--HHHHHhHhhcCCCceEEEEEec-CCCCCCCcccccCccchhHHHHHHhhcCCCCCc
Q 003422 336 LSLDVTKKCLVGEGWSPVFATK--QDALERAAFDSNSQVGAIFQVL-HTKESPPTYFRTNKFTSAFQEIVDAYGVAKYRE 412 (821)
Q Consensus 336 ~~~~~t~~~~~~~GWvP~~~~~--~~~L~~~~~~~~~~~~~~~~~~-~~~~~pPt~l~n~~~~~pFe~lv~~Yg~P~Y~E 412 (821)
++..|+++++++||||+++++ ++.+++.+. ..+.....++ +++++|||+++||+|++|||.+|+|||+|+|+|
T Consensus 268 -~~~~t~~~~~l~GWvP~~~~~~l~~~l~~~~~---~~~~v~~~~~~~~~~~~Pt~l~N~~~~~pFE~lv~mYg~P~Y~E 343 (646)
T PRK05771 268 -KFLKTDKTFAIEGWVPEDRVKKLKELIDKATG---GSAYVEFVEPDEEEEEVPTKLKNPKFIKPFESLTEMYSLPKYNE 343 (646)
T ss_pred -hhhcCCcEEEEEEEeehhHHHHHHHHHHHhcC---CcEEEEEeCCCCcCCCCCEEeeCCchhhhHHHHHHHcCCCCCCC
Confidence 566789999999999999999 777777432 2333445566 466899999999999999999999999999999
Q ss_pred cCCcchhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhhhccccccchhhhchhhHHHHHHHHHHHHHHHHHhccccc
Q 003422 413 ANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMALFSIYTGLIYNEFFS 492 (821)
Q Consensus 413 iDPt~~~~i~fp~fFG~MfgD~GyGlll~l~~~~l~~~~~~~~~~~~~~~~~~~~~~r~il~~~gi~si~~G~lyg~fFG 492 (821)
+||||++|+|||+||||||||+|||++++++|+++.++.++.. .++...++++++||++||+||++||||||
T Consensus 344 iDPT~~~ai~f~lfFGmM~gD~GyGLil~l~~~~l~~~~~k~~--------~~~~~~~~il~~~gi~sii~G~lyG~fFG 415 (646)
T PRK05771 344 IDPTPFLAIFFPLFFGMMLGDAGYGLLLLLIGLLLSFKLKKKS--------EGLKRLLKILIYLGISTIIWGLLTGSFFG 415 (646)
T ss_pred cCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Confidence 9999999999999999999999999999999998876522211 12345578999999999999999999999
Q ss_pred cccccccccccccccCCCCcccccccccccCcccccccCCCcCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003422 493 VPFEIFSHSAYACRDLSCSEATTVGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNATF 572 (821)
Q Consensus 493 ~~~~~fg~s~~~~~~~~~~~~~~~g~~~~~~~~~fg~dp~~~~~~~~l~f~n~~~m~~si~iGv~~~~~g~~l~~~n~~~ 572 (821)
.+++.++ ..|. +++..++.|..+.+.. ..+|++|+++|++||++|++++++|++|
T Consensus 416 ~~~~~~~-~~~~--------------------~~~~~~~~~~~~~~~~----~~~l~lsl~iGvi~i~~g~~l~~~~~~~ 470 (646)
T PRK05771 416 FSLPIFL-PGGY--------------------LELPEGYPSLSTENDV----MTILIISLLIGVIHLFLGLLLGFINNVR 470 (646)
T ss_pred Ccccccc-cccc--------------------ccccCCccccCCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765442 1111 1112223333332322 1478999999999999999999999999
Q ss_pred cCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhhcCCCCCCCCCccCCchhhHHHHHHHHHHHhh
Q 003422 573 FRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITGSQADLYHVMIYMFLSPTDELGDNQLFPGQKTAQLVLLLLAFVSV 652 (821)
Q Consensus 573 ~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~w~~~~~p~l~~~~i~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~v 652 (821)
+|++.+++++.+||+++++|++.++...+. +.... .+ -..+..++++++++++
T Consensus 471 ~~~~~~a~~~~~~w~l~~~g~~~~~~~~~~--~~~~~------------------------~~-~~~~~~~~~~~g~~~~ 523 (646)
T PRK05771 471 KGDYKDAFLAQLGWLLILLGILLIVLGGFG--LVVGL------------------------GP-LGLIGKYLIIGGVVLI 523 (646)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhccc------------------------hH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999887643321110 00000 00 0001122233333221
Q ss_pred hhhccchhhhhhhcccccccccccccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 003422 653 PWMLLPKPFILKMQHQDRHQGQSYEALQSTDESLQPDTNHDSHGHEEFEFSEVFVHQMIHTIEFVLGAVSNTASYLRLWA 732 (821)
Q Consensus 653 ~~~l~~~pl~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~~i~~ie~vl~~~sntlSYlRL~A 732 (821)
+....+ .++. .+..++ +.+.+ .+++++|||+||+||+|
T Consensus 524 ---------~~~~~~----~~~~--------------------------~~~~~~--~~~~~-~~~~~~~d~lSY~RL~A 561 (646)
T PRK05771 524 ---------ILGEGI----DGKS--------------------------LGGALG--GLGLY-EITGYLGDVLSYARLMA 561 (646)
T ss_pred ---------HHhcch----hccc--------------------------cchhhh--hhhHH-HHHHHHHHHHHHHHHHH
Confidence 111000 0000 011111 33444 46779999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHhhhHhHHhhhhhhheeecccccccCCeeccccc
Q 003422 733 LSLAHSELSSVFYEKVLLLAWGYNNILILIVGIIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFS 812 (821)
Q Consensus 733 l~LAh~~La~v~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~i~~~me~L~~fvH~LRL~~vEFf~KFy~G~G~~F~Pf~ 812 (821)
+||||++||.|||.|+.+++. ..+++..+++++++++| |.+|++|++|++|||++||||||||||||+|+|++|+||+
T Consensus 562 lgLa~~~ia~~~n~la~~~~~-~~~~~~~i~~ili~v~G-h~~ni~L~~L~~~vh~lRL~yvEff~kfyeg~G~~f~Pf~ 639 (646)
T PRK05771 562 LGLAGAGIAMAFNLMAGLLPP-SIGVIGIIVGIIIFIFG-HLLNIALSILGAFVHGLRLHYVEFFGKFYEGGGKKFNPFK 639 (646)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCCeecCCcc
Confidence 999999999999999986643 23455556666666666 4478999999999999999999999999999999999999
Q ss_pred ccccC
Q 003422 813 FALLD 817 (821)
Q Consensus 813 ~~~~~ 817 (821)
.++..
T Consensus 640 ~~~ky 644 (646)
T PRK05771 640 AIRKY 644 (646)
T ss_pred ccccc
Confidence 87754
No 4
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=100.00 E-value=2.7e-90 Score=815.77 Aligned_cols=634 Identities=28% Similarity=0.409 Sum_probs=471.5
Q ss_pred cccccCceEEEEeccCcHHHHHHHHhccCcEEEecCCCCCChhhh------------hhHHHHHHHHHHHHHHHHHHHHH
Q 003422 19 FRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQR------------TYAAQIKKCAEMARKLRFFKEQM 86 (821)
Q Consensus 19 fRSe~M~~~~Li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~r------------~~~~~v~rceE~e~kl~fl~~~l 86 (821)
+|+++|+|+.++.+++..++++++||+.|++|++|.+........ ..+..+.+..+..+++..+.+
T Consensus 1 ~~~~~M~kv~i~~~~~~~~~vi~~L~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~l~~-- 78 (660)
T COG1269 1 MRPEKMKKVSIIGLKSELDPVLAELHDFGLVHLEDLEEGEKGLKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEG-- 78 (660)
T ss_pred CchhhheeEEEEeehhhhhHHHHHHHHcCeEEeeccccccccccccccchhhhhhccchhhhhhHHHHHHHHHHHHhh--
Confidence 489999999999999999999999999999999999865432211 111112234444444444433
Q ss_pred HHcCCCCCCCCCCCCCC---CHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 003422 87 LKAGILSSVKSTTRADN---NTDD----LEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAA 159 (821)
Q Consensus 87 ~k~~i~~~~~~~~~~~~---~l~e----Le~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~~~~~l~~~~~~~~~ 159 (821)
+....++ ...+... .+.+ .++...+++++.+...++.+.++++.+.+.+....++..+.+ +
T Consensus 79 -~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ee~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~-------- 146 (660)
T COG1269 79 -RLFILPE--EVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELEPLAYL-D-------- 146 (660)
T ss_pred -hhhcccc--cchhHHHhhhhHHHHHHHHHHHHHhhhHHHHhHHHHHHHHhhhHHHHHHHHHHhhhhhcc-c--------
Confidence 2111110 0011111 1111 112222233344444444444444444444443333322221 1
Q ss_pred HHhhhhhhccCCCCcCCCCccccccCCCCCCcceEEEEEEEEcCCchHHHHHHHHHhhcCcEEEEeeccCCccccCCCCc
Q 003422 160 QQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGE 239 (821)
Q Consensus 160 ~~~~~~~~~~~~~~~~~pLl~~~e~~~~~~~~~~~~~~~G~I~~~~~~~f~~~l~r~~~gn~~~~~~~i~~~~~~~~~~~ 239 (821)
.+..++. +.+...+..|..+.+..+.+.+.+-+.. ..+ .+
T Consensus 147 --------------~~~~~l~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------------~~~----~~ 186 (660)
T COG1269 147 --------------FDLSLLR---------GLKFLLVRLGLVRREKLEALVGVIEDEV-------------ALY----GE 186 (660)
T ss_pred --------------hhhHhhc---------ccceEEEEeeeehhhhhhHHHhhccccc-------------chh----hh
Confidence 1222221 1456778888888888888765431100 000 02
Q ss_pred ccceEEEEEEEeChhhHHHHHHhhhccCcEEeeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003422 240 KMEKNVFVVFYSGERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQW 319 (821)
Q Consensus 240 ~~~k~v~vi~~~~~~~~~~v~~i~~~~~~~~~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~ 319 (821)
...+..++++.+.++...++.+++++.+++.+++|+....|.+.+.++++++++.++++++++++++...+++.+.+..|
T Consensus 187 ~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 266 (660)
T COG1269 187 NVEASVVIVVAHGAEDLDKVSKILNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAV 266 (660)
T ss_pred ccccceEEEEEecccchHHHHHHHHhCCcEEeeccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22356678888889999999999999999999999988789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccCcEEEEEEEeeccchh--HHHHHhHhhcCCCceEEEEEecCCC---CCCCcccccCcc
Q 003422 320 NLLVKKEKSIYHTLNMLSLDVTKKCLVGEGWSPVFATK--QDALERAAFDSNSQVGAIFQVLHTK---ESPPTYFRTNKF 394 (821)
Q Consensus 320 ~~~~~~ek~i~~~l~~~~~~~t~~~~~~~GWvP~~~~~--~~~L~~~~~~~~~~~~~~~~~~~~~---~~pPt~l~n~~~ 394 (821)
+..+..|+.+++..+ ++..|+++++++||||+++++ ++.++++++. . ..++..+.+ ++|||+++||+|
T Consensus 267 ~~~l~~e~~~~~~~~--~~~~t~~~~~~eGWvP~~~~~~~~~~i~~~~~~---~--~~~~~~~~~~~~e~~Pt~l~n~~~ 339 (660)
T COG1269 267 REILEIEKALGDVLS--KLARTEYTLAIEGWVPADEVEKLKKIINRATGG---A--AYFEVSETDEDKEEVPTKLRNPKF 339 (660)
T ss_pred HHHHHHHHHHHHHHH--HhhccceEEEEEEeccHHHHHHHHHHHHHhcCC---c--eEEEeecCCCccCCCCEeecCCcc
Confidence 999999999999999 556677899999999999999 8888886541 2 455554444 899999999999
Q ss_pred chhHHHHHHhhcCCCCCccCCcchhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhhhccccccchhhhchhhHHHHH
Q 003422 395 TSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVIL 474 (821)
Q Consensus 395 ~~pFe~lv~~Yg~P~Y~EiDPt~~~~i~fp~fFG~MfgD~GyGlll~l~~~~l~~~~~~~~~~~~~~~~~~~~~~r~il~ 474 (821)
++|||.+|+|||+|+|+|||||+++++|||+|||+||||+|||++++++|+++.++.++......+++ ..+++
T Consensus 340 i~~Fe~l~emY~iPkY~EidPt~~~a~~Fp~fFG~M~gD~gyGlll~l~sl~l~~~~~~~~~~~~~~l-------~~~~~ 412 (660)
T COG1269 340 ISPFESLTEMYGIPKYGEIDPTPFLALFFPLFFGIMFGDLGYGLLLFLISLLLLRYFKKRLPEGLKKL-------GKILL 412 (660)
T ss_pred cchHHHHHHHhcCCCCCCcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccccchhHHHH-------HHHHH
Confidence 99999999999999999999999999999999999999999999999999999877543111122222 34789
Q ss_pred HHHHHHHHHHHHhccccccccccccccccccccCCCCcccccccccccCcccccccCCCcCCCCCccccchhhHHHHHHH
Q 003422 475 MMALFSIYTGLIYNEFFSVPFEIFSHSAYACRDLSCSEATTVGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILL 554 (821)
Q Consensus 475 ~~gi~si~~G~lyg~fFG~~~~~fg~s~~~~~~~~~~~~~~~g~~~~~~~~~fg~dp~~~~~~~~l~f~n~~~m~~si~i 554 (821)
++|++|++||++||+|||.+. .+ ..+|++++..|+...+.+.+ +++|.+|+.+
T Consensus 413 ~~~i~t~i~G~l~g~~fG~~~-~~------------------------~~~p~~~~~~~~~~~~~~~~--~~~m~~sl~i 465 (660)
T COG1269 413 YLGISTIIWGFLYGEFFGPAV-LL------------------------STLPIGLLFVYHGLDEGLLF--SNILILSLLI 465 (660)
T ss_pred HHHHHHHHHHHHhccccCCcc-cc------------------------ccCCcccccccccccchhhH--HHHHHHHHHH
Confidence 999999999999999999421 01 14677788888877666665 5689999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhhcCCCCCCCCCccC
Q 003422 555 GVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITGSQADLYHVMIYMFLSPTDELGDNQLF 634 (821)
Q Consensus 555 Gv~~~~~g~~l~~~n~~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~w~~~~~p~l~~~~i~~~l~~~~~~~~~~~~ 634 (821)
|++||++|++++++|.++.+++.+++.+.+.|+ .+++|++.+++.++|.. |.+++..++++..+|.
T Consensus 466 G~~hl~~G~~lg~~~~~~~~~~~~a~~~~~~w~---~~~~G~~~~~~~~~~~~---~~l~~~~~~~~~~~g~-------- 531 (660)
T COG1269 466 GVLHLSLGLLLGFINRVRSGDIKGAILPQLLWL---LIILGLLLLILGYKWSV---PELLGMVGAMFGAFGI-------- 531 (660)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHhhhhHHHH---HHHHHHHHHHHHhhhcc---cchhhHHHHHhhhccH--------
Confidence 999999999999999999888887776555554 45577778888888876 6888877777766652
Q ss_pred CchhhHHHHHHHHHHHhhhhhccchhhhhhhcccccccccccccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHH
Q 003422 635 PGQKTAQLVLLLLAFVSVPWMLLPKPFILKMQHQDRHQGQSYEALQSTDESLQPDTNHDSHGHEEFEFSEVFVHQMIHTI 714 (821)
Q Consensus 635 ~g~~~~~~~l~~~~~~~v~~~l~~~pl~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~~i~~i 714 (821)
..++++++++++ +...++++++++
T Consensus 532 -------~~llvv~~i~~~-------------------------------------------------~~~~~~~~i~~~ 555 (660)
T COG1269 532 -------LGLLVVGLILVP-------------------------------------------------GLVAIGQGILGF 555 (660)
T ss_pred -------HHHHHHHHHHcc-------------------------------------------------hHHHHHhhHHHH
Confidence 112333333221 223467888999
Q ss_pred HHHhhhchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHhhhHhHHhhhhhhhe
Q 003422 715 EFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNNILILIVGIIVFIFATVGVLLVMETLSAFLHALRLHWV 794 (821)
Q Consensus 715 e~vl~~~sntlSYlRL~Al~LAh~~La~v~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~i~~~me~L~~fvH~LRL~~v 794 (821)
+++++++|||+||+||||+||||++||.++|.|+.....+.. ..+++|++++++| |.++++|++|+++||+||||||
T Consensus 556 ~~~~~~~s~i~SY~RL~Al~La~~~ia~~~n~m~~~~~~~~~--~~~i~giii~i~G-h~~n~~l~il~~~vH~lRLh~V 632 (660)
T COG1269 556 EGVLSLLSDVLSYLRLLALGLAGASIASVVNLMTGLLIGSVP--FGIILGIIILIFG-HLLNIALSILGAGVHGLRLHYV 632 (660)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--chHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987654321 2256677777776 4478899999999999999999
Q ss_pred eecccccccCCeecccccccccCCcC
Q 003422 795 EFQNKFYEGDGYKFSPFSFALLDDED 820 (821)
Q Consensus 795 EFf~KFy~G~G~~F~Pf~~~~~~~~~ 820 (821)
|||||||+|+|++|+||+.++...+.
T Consensus 633 EffskFyeG~G~~f~Pf~~~~~~~~~ 658 (660)
T COG1269 633 EFFSKFYEGGGRKFEPFRAERNYTEI 658 (660)
T ss_pred HHhcccccCCCcCCCccccccccccc
Confidence 99999999999999999999877654
No 5
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=92.04 E-value=0.78 Score=49.17 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=65.3
Q ss_pred CceEEEEeccCcHHHHHHHHhccCcEEEecCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 003422 24 MQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADN 103 (821)
Q Consensus 24 M~~~~Li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~r~~~~~v~rceE~e~kl~fl~~~l~k~~i~~~~~~~~~~~~ 103 (821)
=..+.+=+|.+..++++++|.++|.|.-.+.+.+ .....|.+.-.|++.++...+.+.+.+++.+
T Consensus 95 ~~~ltiRVP~~~~~~~l~~l~~~g~v~~~~~~~~--DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~------------- 159 (262)
T PF14257_consen 95 SASLTIRVPADKFDSFLDELSELGKVTSRNISSE--DVTEQYVDLEARLKNLEAEEERLLELLEKAK------------- 159 (262)
T ss_pred eEEEEEEECHHHHHHHHHHHhccCceeeeecccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------
Confidence 3478899999999999999999998877777654 3455666655666666666666666555432
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003422 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (821)
Q Consensus 104 ~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~ 139 (821)
++++ +-+++++|.++..+++.++.+++.+.+.
T Consensus 160 ~~~d----~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 160 TVED----LLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1222 2236666667777777777777766553
No 6
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=86.59 E-value=6.9 Score=47.64 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHhhhhhhccCCCCcCCCCc
Q 003422 101 ADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVE-YKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLL 179 (821)
Q Consensus 101 ~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e-~~~vL~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pLl 179 (821)
++..+++++++++++++++.++.++.+++.+.+..+.. ++..+....+..+.. ..
T Consensus 213 p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------------------~~-- 268 (646)
T PRK05771 213 PSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEAL----------------------SK-- 268 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------Hh--
Confidence 34556677777777777777776666666665554443 333333222221100 00
Q ss_pred cccccCCCCCCcceEEEEEEEEcCCchHHHHHHHHHhhcCcEEEEe
Q 003422 180 TDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQ 225 (821)
Q Consensus 180 ~~~e~~~~~~~~~~~~~~~G~I~~~~~~~f~~~l~r~~~gn~~~~~ 225 (821)
-..+.++-++-|.||.++.+++++.+.+.+.+.+++..
T Consensus 269 --------~~~t~~~~~l~GWvP~~~~~~l~~~l~~~~~~~~~v~~ 306 (646)
T PRK05771 269 --------FLKTDKTFAIEGWVPEDRVKKLKELIDKATGGSAYVEF 306 (646)
T ss_pred --------hhcCCcEEEEEEEeehhHHHHHHHHHHHhcCCcEEEEE
Confidence 01134678899999999999999999887766655543
No 7
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=72.29 E-value=31 Score=42.15 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=30.4
Q ss_pred ceEEEEEEEEcCCchHHHHHHHHHhhcCcEEEEeecc
Q 003422 192 IKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVV 228 (821)
Q Consensus 192 ~~~~~~~G~I~~~~~~~f~~~l~r~~~gn~~~~~~~i 228 (821)
.++...-|.||.++..++++.+.|++.+.+++...+.
T Consensus 287 ~~~~~~eGWvP~~~~~~~~~~i~~~~~~~~~~~~~~~ 323 (660)
T COG1269 287 EYTLAIEGWVPADEVEKLKKIINRATGGAAYFEVSET 323 (660)
T ss_pred ceEEEEEEeccHHHHHHHHHHHHHhcCCceEEEeecC
Confidence 3678899999999999999999988877777655443
No 8
>PF03223 V-ATPase_C: V-ATPase subunit C; InterPro: IPR004907 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C subunit that is part of the V1 complex, and is localised to the interface between the V1 and V0 complexes []. This subunit does not show any homology with F-ATPase subunits. The C subunit plays an essential role in controlling the assembly of V-ATPase, acting as a flexible stator that holds together the catalytic (V1) and membrane (V0) sectors of the enzyme []. The release of subunit C from the ATPase complex results in the dissociation of the V1 and V0 subcomplexes, which is an important mechanism in controlling V-ATPase activity in cells. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033180 proton-transporting V-type ATPase, V1 domain; PDB: 1U7L_A.
Probab=69.79 E-value=2e+02 Score=32.58 Aligned_cols=105 Identities=13% Similarity=0.129 Sum_probs=51.5
Q ss_pred cceEEEEEEEEcCCchHHHHHHHHHhhcCcEEEEeeccCCccccCCCCcccceEEE-EEEEeChhhHHHHHHhhhccCcE
Q 003422 191 QIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVF-VVFYSGERAKNKILKICDAFGAN 269 (821)
Q Consensus 191 ~~~~~~~~G~I~~~~~~~f~~~l~r~~~gn~~~~~~~i~~~~~~~~~~~~~~k~v~-vi~~~~~~~~~~v~~i~~~~~~~ 269 (821)
+.++..++=.||+.....|.+. |+..-..+--+.+. .+ . ++.+...| |++| +...++...-|++-+|.
T Consensus 177 SEyL~Tl~VvVPk~~~~ewl~~-YEtL~~~VVPrSs~----~i---~-eD~ey~L~~VtlF--kk~~~eF~~~~re~kf~ 245 (371)
T PF03223_consen 177 SEYLTTLLVVVPKNSVKEWLKS-YETLTDMVVPRSSK----KI---A-EDSEYVLFSVTLF--KKVVDEFKNKCREKKFI 245 (371)
T ss_dssp -SSEEEEEEEEEGGGHHHHHHH-GGGSSTTB-TT--E----EE---E-E-SSEEEEEEEEE--GGGHHHHHHHHHHTT-E
T ss_pred cccceEEEEEechhhHHHHHHH-HhccCCccCCChHH----hh---h-cCCCeEEEEEEEE--eccHHHHHHHHHHcCCe
Confidence 4567777779999999999876 43333322111100 00 0 11123333 4444 55678888888887777
Q ss_pred EeeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003422 270 RYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQ 310 (821)
Q Consensus 270 ~~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~ 310 (821)
.=++--+. +..++..+++++++.+.++....+...++
T Consensus 246 vRdF~y~e----e~~~~~~~e~~~l~~~~~~~~~~L~r~~~ 282 (371)
T PF03223_consen 246 VRDFKYDE----EESEEEKEEREKLETEEKKQWGELLRWCK 282 (371)
T ss_dssp EE-----H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecccCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55552221 22334444455555544444444444444
No 9
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=63.37 E-value=36 Score=30.15 Aligned_cols=47 Identities=9% Similarity=0.084 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhhhHHHHHHHHHHH
Q 003422 550 MSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGY 596 (821)
Q Consensus 550 ~si~iGv~~~~~g~~l~~~n~~~~~~~~~~~~~~~~~~l~~~~~~g~ 596 (821)
-.++.|++.+.++.++.+++.-|.++..+-....++-+-|.+|++--
T Consensus 13 ~vli~GiiLL~~aCIfAfidfsK~~~~~~~~wRalSii~FI~giil~ 59 (92)
T PF05767_consen 13 GVLIGGIILLIAACIFAFIDFSKNTKPTDYTWRALSIICFILGIILT 59 (92)
T ss_pred hHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999998888667777777776665533
No 10
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=61.54 E-value=33 Score=27.61 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYK 140 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~ 140 (821)
++++|.++.+++..+..+..+.+++++..+++++--
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777777776643
No 11
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=61.50 E-value=80 Score=38.04 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 003422 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEF 149 (821)
Q Consensus 106 ~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~~~~~ 149 (821)
++++++++.+..++.++.++.++.+.+..++++...+.+++..+
T Consensus 345 ~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~l 388 (594)
T PF05667_consen 345 EELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVEL 388 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555544444443
No 12
>PRK10692 hypothetical protein; Provisional
Probab=60.38 E-value=34 Score=29.99 Aligned_cols=49 Identities=24% Similarity=0.353 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003422 550 MSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITG 608 (821)
Q Consensus 550 ~si~iGv~~~~~g~~l~~~n~~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~w~~~ 608 (821)
+-..+|.+.|+.|+..++.|.+..=+ +|+++...++++..+.+ +-|++|
T Consensus 12 ~lMglGmv~Mv~gigysi~~~i~~L~--------Lp~~~~~gal~~IFiGA--llWL~G 60 (92)
T PRK10692 12 VLMGLGLVVMVVGVGYSILNQLPQLN--------LPQFFAHGALLSIFVGA--LLWLAG 60 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCC--------chHHHHhhHHHHHHHHH--HHHHhc
Confidence 45678999999999999999877654 46766666666533333 347764
No 13
>PRK10884 SH3 domain-containing protein; Provisional
Probab=58.85 E-value=55 Score=33.85 Aligned_cols=87 Identities=7% Similarity=0.121 Sum_probs=42.2
Q ss_pred cCcEEEecCCCCCChhhhhh----HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 003422 46 LGLLQFKDLNSEKSPFQRTY----AAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVE 121 (821)
Q Consensus 46 lg~Vqf~Dln~~~~~~~r~~----~~~v~rceE~e~kl~fl~~~l~k~~i~~~~~~~~~~~~~l~eLe~~l~~le~~l~~ 121 (821)
-|.+|++|-+...-=...+| .....|+.++++++.-+++.+....-. .+....++++.+++.++++.+
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~--------~~~~~~~l~~~~~~~~~~~~~ 136 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNT--------WNQRTAEMQQKVAQSDSVING 136 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 36888887654221111111 223455667777777777666542211 112224444444444555555
Q ss_pred HHhhHHHHHHHHHHHHHHH
Q 003422 122 INANGDKLQRAHSELVEYK 140 (821)
Q Consensus 122 l~~~~~~L~~~~~eL~e~~ 140 (821)
+.++.++|++++.++....
T Consensus 137 L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555554444433
No 14
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=58.48 E-value=35 Score=42.42 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=17.5
Q ss_pred eEEEEEEEEcCCchHHHHHHHHHhh
Q 003422 193 KLGFIAGLVPREKSMSFERMLFRAT 217 (821)
Q Consensus 193 ~~~~~~G~I~~~~~~~f~~~l~r~~ 217 (821)
++-+.-|.||.++.+++++.+.+.+
T Consensus 289 ~~~~~~GWvP~~~~~~l~~~l~~~~ 313 (759)
T PF01496_consen 289 NVFILEGWVPEKDVEELKKALEEAT 313 (759)
T ss_dssp -SEEEEEEE-TTTHHHHHHT--SS-
T ss_pred cEEEEEEeccHHHHHHHHHHHHhhc
Confidence 5678899999999999998775444
No 15
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=56.98 E-value=1.7e+02 Score=27.25 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003422 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQK 145 (821)
Q Consensus 106 ~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~ 145 (821)
.++.+.++.+.+++..+.+..+.++..+.+++.-+..++.
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~ 41 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLET 41 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777665554443
No 16
>PRK11637 AmiB activator; Provisional
Probab=56.29 E-value=1.2e+02 Score=34.89 Aligned_cols=8 Identities=13% Similarity=0.443 Sum_probs=3.2
Q ss_pred HHHhhcCC
Q 003422 401 IVDAYGVA 408 (821)
Q Consensus 401 lv~~Yg~P 408 (821)
++.-||.+
T Consensus 315 i~~~fg~~ 322 (428)
T PRK11637 315 TLHRFGEQ 322 (428)
T ss_pred ccCCCCCC
Confidence 33334433
No 17
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=53.94 E-value=44 Score=29.17 Aligned_cols=49 Identities=27% Similarity=0.326 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003422 550 MSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITG 608 (821)
Q Consensus 550 ~si~iGv~~~~~g~~l~~~n~~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~w~~~ 608 (821)
+-..+|.+.|+.|+..++.|.+.+=+ +|+++...++++..+.+ +-|++|
T Consensus 12 ~lMglGmv~Mv~gigysi~~~~~~L~--------Lp~~~~~gal~~IFiGA--llWL~G 60 (89)
T PF10762_consen 12 VLMGLGMVVMVGGIGYSILSQIPQLG--------LPQFLAHGALFSIFIGA--LLWLVG 60 (89)
T ss_pred HHHHHhHHHHHHhHHHHHHHhcccCC--------CcHHHHhhHHHHHHHHH--HHHHhc
Confidence 45678999999999999999887655 36666555555533332 247764
No 18
>PRK02302 hypothetical protein; Provisional
Probab=51.44 E-value=16 Score=32.35 Aligned_cols=52 Identities=8% Similarity=0.210 Sum_probs=39.8
Q ss_pred cccccCceEEEEeccCcHHHHHHHHhccCcEEEecCCCCCChhhhhhHHHHHH
Q 003422 19 FRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKK 71 (821)
Q Consensus 19 fRSe~M~~~~Li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~r~~~~~v~r 71 (821)
.=|.+|+++.|++..+.++++++.|.++..|.=.+.+.- +...-.|...+-|
T Consensus 31 Y~Skk~kYvvlYvn~~~~e~~~~kl~~l~fVk~Ve~S~~-~~l~~~f~~~l~r 82 (89)
T PRK02302 31 YHSKRSRYLVLYVNKEDVEQKLEELSKLKFVKKVRPSAI-DEIDQNFVGNLYR 82 (89)
T ss_pred EEeccccEEEEEECHHHHHHHHHHHhcCCCeeEEcccCc-hhccchhhhhhhc
Confidence 348899999999999999999999999999988877642 1223344444433
No 19
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=49.14 E-value=16 Score=31.03 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=33.7
Q ss_pred cccccCceEEEEeccCcHHHHHHHHhccCcEEEecCCC
Q 003422 19 FRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNS 56 (821)
Q Consensus 19 fRSe~M~~~~Li~~~e~a~~~v~~Lg~lg~Vqf~Dln~ 56 (821)
.-|.+|..+.|++..+.++++++.|.++..|.=...+.
T Consensus 25 Y~Skk~kYvvlYvn~~~~e~~~~kl~~l~fVk~Ve~S~ 62 (71)
T PF09902_consen 25 YVSKKMKYVVLYVNEEDVEEIIEKLKKLKFVKKVEPSP 62 (71)
T ss_pred EEECCccEEEEEECHHHHHHHHHHHhcCCCeeEEeccC
Confidence 46899999999999999999999999999987766543
No 20
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=48.98 E-value=2.1e+02 Score=34.37 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=28.4
Q ss_pred EeeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003422 270 RYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFE 317 (821)
Q Consensus 270 ~~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~ 317 (821)
...-.+++-..++.+.++++++.+++..+++.=.-+.+.-..+...++
T Consensus 182 ~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~ 229 (560)
T PF06160_consen 182 ELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLE 229 (560)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Confidence 334445566778888888888888887777544433333333333333
No 21
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=47.87 E-value=2.4e+02 Score=26.43 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003422 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQK 145 (821)
Q Consensus 106 ~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~ 145 (821)
+++...++.+..++..+.++++.++..+.++..-++.++.
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~ 41 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLET 41 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777888888888888888877777666555443
No 22
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=43.96 E-value=7.9e+02 Score=31.29 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003422 281 AQAISEVSGRLSELKTTLDAGLLHRGNLLQTIG 313 (821)
Q Consensus 281 ~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~ 313 (821)
...++++++.+.++++++++...++.+.....+
T Consensus 677 ~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~q 709 (1200)
T KOG0964|consen 677 RSELKELQESLDEVRNEIEDIDQKIDQLNNNMQ 709 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666655555544444433
No 23
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=43.55 E-value=58 Score=24.26 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003422 103 NNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKL 141 (821)
Q Consensus 103 ~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~ 141 (821)
+.++++.+.+=++|.++++-.+...++.+.++++..+.+
T Consensus 4 ~~ieelkqll~rle~eirett~sl~ninksidq~dk~~y 42 (46)
T PF08181_consen 4 KKIEELKQLLWRLENEIRETTDSLRNINKSIDQYDKYTY 42 (46)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhchhh
Confidence 356777777888888888888888888888887766554
No 24
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=41.55 E-value=4.6e+02 Score=31.53 Aligned_cols=33 Identities=6% Similarity=0.184 Sum_probs=22.1
Q ss_pred EEeeCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 003422 269 NRYPFNEEFDKQAQAISEVSGRLSELKTTLDAG 301 (821)
Q Consensus 269 ~~~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~ 301 (821)
....-.+++-...+.+.+++.++.++++.+++.
T Consensus 185 ~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~i 217 (569)
T PRK04778 185 VELTESGDYVEAREILDQLEEELAALEQIMEEI 217 (569)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556677777888888877777766643
No 25
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=41.26 E-value=75 Score=26.87 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003422 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSEL 136 (821)
Q Consensus 104 ~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL 136 (821)
.+.++..+++++++++.++.++.++|+++++.+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666677777777777777777777777777
No 26
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=41.13 E-value=64 Score=38.22 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003422 101 ADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKL 141 (821)
Q Consensus 101 ~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~ 141 (821)
....+..+++.+++++.++.+.....+.|+++++++...+.
T Consensus 472 ~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 472 KDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666667777777777777777777777766655443
No 27
>PRK11637 AmiB activator; Provisional
Probab=40.84 E-value=1.2e+02 Score=34.90 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Q 003422 111 KLGDLEAELVEINANGDKLQRAHS 134 (821)
Q Consensus 111 ~l~~le~~l~~l~~~~~~L~~~~~ 134 (821)
+++++++++.++.++++++++++.
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~ 113 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIA 113 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 28
>PHA02562 46 endonuclease subunit; Provisional
Probab=39.74 E-value=29 Score=41.24 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003422 67 AQIKKCAEMARKLRFFKEQML 87 (821)
Q Consensus 67 ~~v~rceE~e~kl~fl~~~l~ 87 (821)
+..++++++.+++..+++.+.
T Consensus 327 ~~~~~~~~~~~~i~el~~~i~ 347 (562)
T PHA02562 327 EIMDEFNEQSKKLLELKNKIS 347 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544
No 29
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=39.01 E-value=1.7e+02 Score=23.64 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003422 284 ISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLN 334 (821)
Q Consensus 284 l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~~l~ 334 (821)
+.+++.++..++..+...++ ..+++++.++.....+++-.++|+...
T Consensus 2 i~elEn~~~~~~~~i~tvk~----en~~i~~~ve~i~envk~ll~lYE~Vs 48 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKK----ENEEISESVEKIEENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555543333 333444455555555666666776543
No 30
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=38.37 E-value=1.6e+02 Score=31.65 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 003422 67 AQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKA 146 (821)
Q Consensus 67 ~~v~rceE~e~kl~fl~~~l~k~~i~~~~~~~~~~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~~ 146 (821)
+-+..++|+|..++.|..+- ..+.+.+|-+|..+++..+.+.+-..+...|+++...+.|....|+++
T Consensus 15 ~aLqKIqelE~QldkLkKE~------------qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~ 82 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKER------------QQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKT 82 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 44555666666666664422 346778899999999999999999999999999999999999999988
Q ss_pred hhhhh
Q 003422 147 GEFFS 151 (821)
Q Consensus 147 ~~~l~ 151 (821)
+.-+.
T Consensus 83 rqKls 87 (307)
T PF10481_consen 83 RQKLS 87 (307)
T ss_pred HHHhh
Confidence 87654
No 31
>COG4471 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.52 E-value=45 Score=29.40 Aligned_cols=52 Identities=10% Similarity=0.167 Sum_probs=40.5
Q ss_pred ccccCceEEEEeccCcHHHHHHHHhccCcEEEecCCCCCChhhhhhHHHHHHH
Q 003422 20 RSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKC 72 (821)
Q Consensus 20 RSe~M~~~~Li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~r~~~~~v~rc 72 (821)
=|.+++.+.|+++.+..+++++.|.++-+|-=++.+.- +..+.+|.++..+.
T Consensus 31 ~Skk~kY~vlYvn~~~ve~~~~kl~~~kfVK~V~~s~~-~~Lk~~f~~~~~~~ 82 (90)
T COG4471 31 VSKKSKYVVLYVNEQDVEQIVEKLSRLKFVKKVRVSHI-PYLKTEFEGNLHEA 82 (90)
T ss_pred EecceeEEEEEECHHHHHHHHHHHhhceeeeecccccc-HHHHhHHhhchhHH
Confidence 37899999999999999999999999999988877542 23455666644443
No 32
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.73 E-value=2.4e+02 Score=27.98 Aligned_cols=92 Identities=14% Similarity=0.273 Sum_probs=50.8
Q ss_pred eccCcHHHHHHHHhccCcEEEecCC--------CCCCh---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 003422 31 IPIESAHLTVSYLGELGLLQFKDLN--------SEKSP---------FQRTYAAQIKKCAEMARKLRFFKEQMLKAGILS 93 (821)
Q Consensus 31 ~~~e~a~~~v~~Lg~lg~Vqf~Dln--------~~~~~---------~~r~~~~~v~rceE~e~kl~fl~~~l~k~~i~~ 93 (821)
+.+..+-.+++.|.+-|-+...+.- ++..+ ++....+--.++.++....+-+..++....
T Consensus 30 ~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~--- 106 (169)
T PF07106_consen 30 VGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLS--- 106 (169)
T ss_pred ccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 3456677888999999988877642 11111 011111112222333333333433333322
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003422 94 SVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRA 132 (821)
Q Consensus 94 ~~~~~~~~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~ 132 (821)
...+.+++.+.+.++++++..+.++++.|++.
T Consensus 107 -------~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 107 -------SEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred -------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22345788888888888888877777777763
No 33
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=35.06 E-value=2.6e+02 Score=26.31 Aligned_cols=42 Identities=24% Similarity=0.297 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003422 100 RADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKL 141 (821)
Q Consensus 100 ~~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~ 141 (821)
..+.-.++|++.++.++.++..+....+++++++.++....+
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888888888888888888888888888877543
No 34
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=34.54 E-value=4.4e+02 Score=32.58 Aligned_cols=88 Identities=15% Similarity=0.083 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hcc--cccc
Q 003422 280 QAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHT------------------LNM--LSLD 339 (821)
Q Consensus 280 ~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~~------------------l~~--~~~~ 339 (821)
+...+.+++++++++++++.+..+..+++.++.. ++.+++..+++-..-... +.. ..-.
T Consensus 90 ~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~-eL~E~~~vl~~t~~Ff~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (829)
T KOG2189|consen 90 PPREIIDLEEQLEKLESELRELNANKEALKANYN-ELLELKYVLEKTDEFFSTSVQESFEDDETADLGEGPLESAEKGPF 168 (829)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHhhhhhcccchhhhhcchhhhhhcccccchhccCCC
Confidence 3556778888888888888866554443333322 344444444433211110 000 0001
Q ss_pred ccCcEEEEEEEeeccchh--HHHHHhHhhcC
Q 003422 340 VTKKCLVGEGWSPVFATK--QDALERAAFDS 368 (821)
Q Consensus 340 ~t~~~~~~~GWvP~~~~~--~~~L~~~~~~~ 368 (821)
.+.+.-.+.|=||.++.. ++.|-++++++
T Consensus 169 ~~~~l~FvaGvI~r~k~~~fER~LWRa~Rgn 199 (829)
T KOG2189|consen 169 DGLKLGFVAGVINREKVFAFERMLWRACRGN 199 (829)
T ss_pred CcccceeEEeeechhHHHHHHHHHHHHhccc
Confidence 122334678999999999 89999988753
No 35
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=34.49 E-value=7.4e+02 Score=28.99 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=12.7
Q ss_pred HHHHHHHHHHH-HHhcccccccc
Q 003422 474 LMMALFSIYTG-LIYNEFFSVPF 495 (821)
Q Consensus 474 ~~~gi~si~~G-~lyg~fFG~~~ 495 (821)
+.+|.+--=|| |+.|++||.+.
T Consensus 136 l~lGqaiGRiGnF~Nge~yG~pT 158 (460)
T PRK13108 136 VVLAQAIGRLGNYFNQELYGRET 158 (460)
T ss_pred HHHHHHHHHHHHHhcccccCCCC
Confidence 44555555556 45557888653
No 36
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=34.42 E-value=76 Score=24.45 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Q 003422 115 LEAELVEINANGDKLQRAHSELV 137 (821)
Q Consensus 115 le~~l~~l~~~~~~L~~~~~eL~ 137 (821)
+|+++.++.+++.+|+++++.|.
T Consensus 17 IEqkiedid~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 17 IEQKIEDIDEQIAELEAKRQRLV 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555544443
No 37
>PRK10884 SH3 domain-containing protein; Provisional
Probab=34.34 E-value=1.6e+02 Score=30.45 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=44.6
Q ss_pred hccCcEEEecCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 003422 44 GELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEIN 123 (821)
Q Consensus 44 g~lg~Vqf~Dln~~~~~~~r~~~~~v~rceE~e~kl~fl~~~l~k~~i~~~~~~~~~~~~~l~eLe~~l~~le~~l~~l~ 123 (821)
|+.|.||=..+....+.-. +....-++.+++..+++-+.+.......... ..-...+..+++|+++-+++.+++.++.
T Consensus 75 G~~GWV~~~~Ls~~p~~~~-rlp~le~el~~l~~~l~~~~~~~~~~~~~l~-~~~~~~~~~~~~L~~~n~~L~~~l~~~~ 152 (206)
T PRK10884 75 GRTAWIPLKQLSTTPSLRT-RVPDLENQVKTLTDKLNNIDNTWNQRTAEMQ-QKVAQSDSVINGLKEENQKLKNQLIVAQ 152 (206)
T ss_pred CCEEeEEHHHhcCCccHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999888876543322 3333334555666666666665543211100 0000111223445555555555555555
Q ss_pred hhHHHHHHHHHHHHH
Q 003422 124 ANGDKLQRAHSELVE 138 (821)
Q Consensus 124 ~~~~~L~~~~~eL~e 138 (821)
++.+.++.+.+++++
T Consensus 153 ~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 153 KKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555554444443
No 38
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=34.20 E-value=83 Score=24.24 Aligned_cols=30 Identities=27% Similarity=0.581 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003422 104 NTDDLEVKLGDLEAELVEINANGDKLQRAH 133 (821)
Q Consensus 104 ~l~eLe~~l~~le~~l~~l~~~~~~L~~~~ 133 (821)
..+.+|+.++++++++.++.++.+.|-.+.
T Consensus 13 ~~d~IEqkiedid~qIaeLe~KR~~Lv~qH 42 (46)
T PF08946_consen 13 HYDNIEQKIEDIDEQIAELEAKRQRLVDQH 42 (46)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 456778888888888888888877776654
No 39
>PRK02886 hypothetical protein; Provisional
Probab=34.18 E-value=50 Score=29.23 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=34.4
Q ss_pred cccccCceEEEEeccCcHHHHHHHHhccCcEEEecCCC
Q 003422 19 FRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNS 56 (821)
Q Consensus 19 fRSe~M~~~~Li~~~e~a~~~v~~Lg~lg~Vqf~Dln~ 56 (821)
.=|.+|..+.|++..+.++++++.|.++..|.=++.+.
T Consensus 29 Y~Skr~kYvvlYvn~~~~e~~~~kl~~l~fVk~Ve~S~ 66 (87)
T PRK02886 29 YVSKRLKYAVLYCDMEQVEDIMNKLSSLPFVKRVEPSY 66 (87)
T ss_pred EEeccccEEEEEECHHHHHHHHHHHhcCCCeeEEcccC
Confidence 34889999999999999999999999999998887764
No 40
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=33.11 E-value=1.2e+02 Score=33.26 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=34.7
Q ss_pred cHHHHHHHHhccCcEEEecCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHc
Q 003422 35 SAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKA 89 (821)
Q Consensus 35 ~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~r~~~~~v~rceE~e~kl~fl~~~l~k~ 89 (821)
..+++.+.|.++..+|.++...+ .......+-+.++++.++++-+.+.+.++
T Consensus 56 ~ld~~~~kl~~Ms~~ql~~~~~k---~~~si~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 56 SLDELKEKLKEMSSTQLRANIAK---AEESIAAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred hhHHHHHHHHhcCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778889999999998875432 22344445556677777777777666543
No 41
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=32.53 E-value=1.1e+02 Score=28.06 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003422 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (821)
Q Consensus 104 ~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~ 139 (821)
.+.+++++++++++++.++.++.++|+++++.+.+-
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 567888888888888888888888888888888663
No 42
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.63 E-value=40 Score=30.99 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=31.8
Q ss_pred ccCceEEEEeccCcHHHHHHHHhccCcEEEecCC
Q 003422 22 EPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLN 55 (821)
Q Consensus 22 e~M~~~~Li~~~e~a~~~v~~Lg~lg~Vqf~Dln 55 (821)
+.|.|+.+++|++...++-++|.+.|.-|+-|..
T Consensus 3 ~~~~K~~vyVP~~~~e~vr~aL~~aGag~iG~Y~ 36 (109)
T COG3323 3 EPLYKIEVYVPEEYVEQVRDALFEAGAGHIGNYD 36 (109)
T ss_pred cceeEEEEEeCHHHHHHHHHHHHhcCCcceeccc
Confidence 5799999999999999999999999999998864
No 43
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=31.41 E-value=2.2e+02 Score=23.94 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHhhH
Q 003422 109 EVKLGDLEAELVEINANG 126 (821)
Q Consensus 109 e~~l~~le~~l~~l~~~~ 126 (821)
++.+.+++.++.+..+..
T Consensus 5 ~e~l~~ie~~l~~~~~~i 22 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERI 22 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 44
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=31.35 E-value=4.9e+02 Score=25.46 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003422 65 YAAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYK 140 (821)
Q Consensus 65 ~~~~v~rceE~e~kl~fl~~~l~k~~i~~~~~~~~~~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~ 140 (821)
....+-|.+|..++|.++...+.-...| -...++-+...++....++..+.++..+-++++.+..+.-
T Consensus 54 Vq~~LgrveEetkrLa~ireeLE~l~dP--------~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~ 121 (159)
T PF04949_consen 54 VQAQLGRVEEETKRLAEIREELEVLADP--------MRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAF 121 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhccc--------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999888754433 3334566666777777777777766666655555544433
No 45
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=31.19 E-value=1.4e+02 Score=25.67 Aligned_cols=43 Identities=23% Similarity=0.221 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAG 147 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~~~ 147 (821)
..++..++.++++++.++.++.++|+.++..+.....+=+.++
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar 68 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAK 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 3466677777888888888888888888888777555433343
No 46
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.24 E-value=1.5e+02 Score=31.36 Aligned_cols=38 Identities=8% Similarity=0.059 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003422 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKL 141 (821)
Q Consensus 104 ~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~ 141 (821)
.++.|..+++...++..++.+++.++..++.++++...
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~ 127 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE 127 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555444444433
No 47
>PRK10263 DNA translocase FtsK; Provisional
Probab=30.15 E-value=5.8e+02 Score=33.77 Aligned_cols=18 Identities=22% Similarity=0.084 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003422 550 MSILLGVAQMNLGIILSY 567 (821)
Q Consensus 550 ~si~iGv~~~~~g~~l~~ 567 (821)
+.++++++-+++.+.|--
T Consensus 26 ~gIlLlllAlfL~lALiS 43 (1355)
T PRK10263 26 LLILIVLFAVWLMAALLS 43 (1355)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444444444444
No 48
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.07 E-value=2e+02 Score=29.15 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003422 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELV 137 (821)
Q Consensus 106 ~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~ 137 (821)
+..+++++++.+++.+..++.+.|+++.+.+.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555443
No 49
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=29.99 E-value=2.3e+02 Score=23.76 Aligned_cols=11 Identities=36% Similarity=0.422 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 003422 72 CAEMARKLRFF 82 (821)
Q Consensus 72 ceE~e~kl~fl 82 (821)
++++|.++.|.
T Consensus 6 i~~LE~~la~q 16 (69)
T PF04102_consen 6 IEELEIKLAFQ 16 (69)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 50
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=29.89 E-value=2.4e+02 Score=24.09 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003422 113 GDLEAELVEINANGDKLQRAHSELVEY 139 (821)
Q Consensus 113 ~~le~~l~~l~~~~~~L~~~~~eL~e~ 139 (821)
++++.++....+.++.|+.+..+|++.
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 51
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=29.50 E-value=3.8e+02 Score=24.57 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003422 70 KKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (821)
Q Consensus 70 ~rceE~e~kl~fl~~~l~k~~i~~~~~~~~~~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~ 139 (821)
.+.++..+++.-++..+... |...++.+|+-.+.+.+.++..+..+++.+....+-|.|.
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~L----------Pt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHL----------PTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666666655331 3445677888788777777777777777777766666554
No 52
>COG3388 Predicted transcriptional regulator [Transcription]
Probab=29.38 E-value=1.8e+02 Score=26.13 Aligned_cols=55 Identities=20% Similarity=0.351 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003422 78 KLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSE 135 (821)
Q Consensus 78 kl~fl~~~l~k~~i~~~~~~~~~~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~e 135 (821)
|+||-.+.+++.++-. +.+.....-++.-+.++++..++.+++++.+++++..+.
T Consensus 44 KVRYSLRVLEq~~iI~---PS~~GAi~td~~~e~ie~i~~dl~ei~e~~~~i~e~~~~ 98 (101)
T COG3388 44 KVRYSLRVLEQENIIS---PSRQGAILTDDFPEFIEEIIGDLSEINEEAENIEEDVAK 98 (101)
T ss_pred hhhhhhhhhhhcCccC---ccccCCccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555321 122223334555556666666667776666666655543
No 53
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.57 E-value=4.8e+02 Score=26.13 Aligned_cols=53 Identities=8% Similarity=0.189 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHhhhhhhhh
Q 003422 102 DNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELV--EYKLVLQKAGEFFSSAL 154 (821)
Q Consensus 102 ~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~--e~~~vL~~~~~~l~~~~ 154 (821)
..++++++++++++.+++....+++.++++-.+... +..++-+....+.+.|+
T Consensus 115 ~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wr 169 (201)
T KOG4603|consen 115 ALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWR 169 (201)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999888666553 34444444444445454
No 54
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=28.15 E-value=2.2e+02 Score=23.94 Aligned_cols=45 Identities=11% Similarity=0.188 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEF 149 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~~~~~ 149 (821)
+.+++..+++++++++.+....+.+++.+..+.+...-+.....|
T Consensus 8 l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW 52 (71)
T PF10779_consen 8 LNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW 52 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555556555555555555555554444433333333
No 55
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=27.99 E-value=4.5e+02 Score=23.68 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=11.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003422 117 AELVEINANGDKLQRAHSELVEYKLV 142 (821)
Q Consensus 117 ~~l~~l~~~~~~L~~~~~eL~e~~~v 142 (821)
+++.++.+++++|++.-.+|.+|...
T Consensus 66 ~~Id~Ie~~V~~LE~~v~~LD~ysk~ 91 (99)
T PF10046_consen 66 QQIDQIEEQVTELEQTVYELDEYSKE 91 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 56
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=27.87 E-value=1.5e+02 Score=27.23 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003422 102 DNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (821)
Q Consensus 102 ~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~ 139 (821)
.....++++.++.++.++..+.++.+.+++++.++...
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666667777777777776666666553
No 57
>PHA02898 virion envelope protein; Provisional
Probab=27.78 E-value=2.4e+02 Score=24.97 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhhhHHHHHHHHH
Q 003422 550 MSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLF 594 (821)
Q Consensus 550 ~si~iGv~~~~~g~~l~~~n~~~~~~~~~~~~~~~~~~l~~~~~~ 594 (821)
-.++.|++.+..+-+..++.--|.++..|-.+..++-+-|.+|++
T Consensus 13 ~vli~GIiLL~~ACIfAfidfSK~~~~~~~~wRalSii~FIlgiv 57 (92)
T PHA02898 13 YVVAFGIILLIVACICAYIELSKSEKPADSALRSISIISFILAII 57 (92)
T ss_pred hHHHHHHHHHHHHHHHheehhhcCCCcchhHHHHHHHHHHHHHHH
Confidence 478899999999999999998888876565555566555655544
No 58
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.71 E-value=2.1e+02 Score=25.51 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003422 102 DNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (821)
Q Consensus 102 ~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~ 139 (821)
....+.|++..+.++.++..+.++...+.+++++++..
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666665543
No 59
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.68 E-value=3e+02 Score=33.67 Aligned_cols=39 Identities=26% Similarity=0.253 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003422 103 NNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKL 141 (821)
Q Consensus 103 ~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~ 141 (821)
..+.++++.++++++++.++..++..++.++.++++...
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~ 459 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIE 459 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666555555544433
No 60
>PRK14127 cell division protein GpsB; Provisional
Probab=27.65 E-value=2.3e+02 Score=26.24 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003422 100 RADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKL 141 (821)
Q Consensus 100 ~~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~ 141 (821)
-+-|+-+++++-|+++.+++..+.++..+|+++..++++...
T Consensus 20 ~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~ 61 (109)
T PRK14127 20 MRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVD 61 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999988888888888888888888887777544
No 61
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=27.27 E-value=2.8e+02 Score=23.28 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~ 139 (821)
+.+||..+.-.+..+.++++-+.+..+++++|+..
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~ 40 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQ 40 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544444444455555444444444444443
No 62
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=27.25 E-value=1.3e+02 Score=33.18 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003422 114 DLEAELVEINANGDKLQRAHSELVEYKL 141 (821)
Q Consensus 114 ~le~~l~~l~~~~~~L~~~~~eL~e~~~ 141 (821)
++.+++.++.++.+++.+++.++++...
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444333333
No 63
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=26.97 E-value=7.5e+02 Score=27.76 Aligned_cols=85 Identities=26% Similarity=0.459 Sum_probs=53.9
Q ss_pred HHhhcCCCCCcc---CCcchhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhhhccccccchhhh----chhhH--HH
Q 003422 402 VDAYGVAKYREA---NPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLDDITDM----TFGGR--YV 472 (821)
Q Consensus 402 v~~Yg~P~Y~Ei---DPt~~~~i~fp~fFG~MfgD~GyGlll~l~~~~l~~~~~~~~~~~~~~~~~~----~~~~r--~i 472 (821)
-+...=|+|... =| -+..+.||++--+-.+-..-+.+.+++|++++.|...+.+. ..+.++. ++.|| .+
T Consensus 150 Kk~l~Dp~~~~~~lGvP-G~~lLiy~i~~l~~~~~~a~~~i~~~iG~yll~kGfgld~~-~~~~~~~~~~~l~~g~it~i 227 (344)
T PF04123_consen 150 KKALSDPEYRRTFLGVP-GLILLIYAILALLGYPAYALGIILLLIGLYLLYKGFGLDDY-LREWLERFRESLYEGRITFI 227 (344)
T ss_pred HHhhcChhhhceeecch-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhcCcHHH-HHHHHHHhccccccceeehH
Confidence 566677888764 45 56777777776666666777999999999998775444331 1122221 22333 24
Q ss_pred HHHHHHHHHHHHHHhc
Q 003422 473 ILMMALFSIYTGLIYN 488 (821)
Q Consensus 473 l~~~gi~si~~G~lyg 488 (821)
....++..++.|+++|
T Consensus 228 tyvva~~l~iig~i~g 243 (344)
T PF04123_consen 228 TYVVALLLIIIGIIYG 243 (344)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556777777777776
No 64
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=26.75 E-value=6.9e+02 Score=25.39 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=18.9
Q ss_pred CcHHHHHHHHhccCcEEEecCCC
Q 003422 34 ESAHLTVSYLGELGLLQFKDLNS 56 (821)
Q Consensus 34 e~a~~~v~~Lg~lg~Vqf~Dln~ 56 (821)
-...++|..|=+-|+|+....-.
T Consensus 30 ~~VKdvlq~LvDDglV~~EKiGs 52 (188)
T PF03962_consen 30 MSVKDVLQSLVDDGLVHVEKIGS 52 (188)
T ss_pred hhHHHHHHHHhccccchhhhccC
Confidence 45789999999999999887643
No 65
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=26.59 E-value=4e+02 Score=24.14 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003422 101 ADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (821)
Q Consensus 101 ~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~ 139 (821)
...-.+.+++.++.++.++..+.++.+.+.++.++++..
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666777777777777777777777766554
No 66
>PF07666 MpPF26: M penetrans paralogue family 26; InterPro: IPR011655 These proteins include those ascribed to M penetrans paralogue family 26 in [].
Probab=26.59 E-value=2.9e+02 Score=26.44 Aligned_cols=81 Identities=12% Similarity=0.157 Sum_probs=51.9
Q ss_pred HhhcCCCCCccCCcchhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhhhccccccchhhhchhhHHHHHHHHHHH-H
Q 003422 403 DAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMALFS-I 481 (821)
Q Consensus 403 ~~Yg~P~Y~EiDPt~~~~i~fp~fFG~MfgD~GyGlll~l~~~~l~~~~~~~~~~~~~~~~~~~~~~r~il~~~gi~s-i 481 (821)
+.+..+++.|.++++..+..-...+-+|+-|. ++++.++++..+..+.++.+++.. + .... ....++..+|++= .
T Consensus 39 ~~~~~~~~~~~~~~~~~~~l~igil~i~~~~i-~~i~~~Il~Ivl~iKis~~k~~~~-~-~~k~-~~~~iL~IIGi~i~~ 114 (130)
T PF07666_consen 39 KSNNTSNNYEEESSMSIGNLVIGILLIIFSGI-FYIVNFILGIVLIIKISSLKNKHP-E-FKKV-TVHKILLIIGIFISP 114 (130)
T ss_pred hhhccccccccccchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCc-c-cccc-hhhhhhhhhhhHHhh
Confidence 35557777777788777766666677777777 999999999998887665555321 1 1110 0123566666655 5
Q ss_pred HHHHHh
Q 003422 482 YTGLIY 487 (821)
Q Consensus 482 ~~G~ly 487 (821)
++++++
T Consensus 115 i~~ii~ 120 (130)
T PF07666_consen 115 ICSIID 120 (130)
T ss_pred HHHHHH
Confidence 666655
No 67
>smart00338 BRLZ basic region leucin zipper.
Probab=26.32 E-value=1.9e+02 Score=23.75 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003422 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVE 138 (821)
Q Consensus 104 ~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e 138 (821)
.+++|+.+++.++.+..++...++.|+.+...+..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666655544
No 68
>PF13256 DUF4047: Domain of unknown function (DUF4047)
Probab=26.17 E-value=4.9e+02 Score=24.48 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003422 101 ADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVL 143 (821)
Q Consensus 101 ~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL 143 (821)
...+++.+++.+..+.+...++..+.+.|++-+.+++.+.+-.
T Consensus 55 ~~~Sie~leq~~~~w~~~rEki~~e~eaLQ~IY~eie~~ynq~ 97 (125)
T PF13256_consen 55 KVTSIEELEQAIVEWKQGREKIVAEREALQNIYTEIEDYYNQI 97 (125)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457899999999999999999999999999999998876543
No 69
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=26.02 E-value=2.7e+02 Score=25.67 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=16.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhH
Q 003422 101 ADNNTDDLEVKLGDLEAELVEINANG 126 (821)
Q Consensus 101 ~~~~l~eLe~~l~~le~~l~~l~~~~ 126 (821)
....++++.+.++.++.++.++.++.
T Consensus 81 r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 81 RQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666666666666666665543
No 70
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=25.87 E-value=2.9e+02 Score=22.49 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVE 138 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e 138 (821)
+++|..++..+..++.++.+.+..++.......+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555444433
No 71
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=25.83 E-value=4.3e+02 Score=24.58 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003422 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (821)
Q Consensus 106 ~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~ 139 (821)
..+++.++.+++++.++.+++++|++.++.+.+.
T Consensus 76 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~ 109 (118)
T cd04776 76 KQLEKMLEKIEKRRAELEQQRRDIDAALAELDAA 109 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555443
No 72
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=25.65 E-value=1.5e+02 Score=27.72 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGE 148 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~~~~ 148 (821)
.-++..++.++++++.+...+.++|+.+.++|.....+++.++.
T Consensus 62 ~yqvq~ei~~Le~kIs~q~~e~~dlkqeV~dLss~eRIldiAkk 105 (120)
T COG4839 62 AYQVQGEITDLESKISEQKTENDDLKQEVKDLSSPERILDIAKK 105 (120)
T ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 34666788889999999999999999999999888888776655
No 73
>PRK02793 phi X174 lysis protein; Provisional
Probab=25.43 E-value=3.7e+02 Score=22.87 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003422 70 KKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVE 138 (821)
Q Consensus 70 ~rceE~e~kl~fl~~~l~k~~i~~~~~~~~~~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e 138 (821)
.|++++|-++.|.++-+ ++|.+.+-+..+++..+......|..++.++.+
T Consensus 8 ~Ri~~LE~~lafQe~tI-------------------e~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 8 ARLAELESRLAFQEITI-------------------EELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 74
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=25.24 E-value=2.3e+02 Score=24.90 Aligned_cols=35 Identities=11% Similarity=0.272 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~ 139 (821)
++.+..++++...++.+++.++..|+.++.+++..
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~ 37 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAENL 37 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777777777553
No 75
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=25.16 E-value=3.6e+02 Score=22.02 Aligned_cols=43 Identities=21% Similarity=0.115 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 003422 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKA 146 (821)
Q Consensus 104 ~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~~ 146 (821)
.+.++++.+..+++.+....+..+...+.+..|+.+..-+++.
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~ 44 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKY 44 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888888888888888876665553
No 76
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=25.11 E-value=2.3e+02 Score=30.41 Aligned_cols=64 Identities=16% Similarity=0.347 Sum_probs=46.3
Q ss_pred hhhHHHHHHhhhccCcEEeeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003422 253 ERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLL 322 (821)
Q Consensus 253 ~~~~~~v~~i~~~~~~~~~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~ 322 (821)
...+.+.+++|.+.|..- -.....|.+.+.++.+++++++.+-.+. ..+++..+.+.++.|...
T Consensus 55 ~~lk~~A~r~~~~~G~rF---lgG~aVP~~~~~~l~~~L~~i~~eF~~~---k~~Fl~~Yd~~i~~w~~~ 118 (257)
T PF11348_consen 55 SKLKKRAERLCLKVGVRF---LGGYAVPEDKAEELAEELEDIKTEFEQE---KQDFLANYDQAIEEWIDR 118 (257)
T ss_pred HHHHHHHHHHHHHcCCcc---cceeEcCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 567888999999988654 3456688888899999999888877654 444555555666666544
No 77
>PLN02939 transferase, transferring glycosyl groups
Probab=25.02 E-value=8.9e+02 Score=31.08 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=32.5
Q ss_pred EEEEeChhhHHHHHHhhhccC-cEEeeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003422 247 VVFYSGERAKNKILKICDAFG-ANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQW 319 (821)
Q Consensus 247 vi~~~~~~~~~~v~~i~~~~~-~~~~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~ 319 (821)
++.-+..+...+|+++=.++. +..+.+. .+.++.++++++-+++.++....++...++-.....+.+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (977)
T PLN02939 321 LVLDQNQDLRDKVDKLEASLKEANVSKFS------SYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEF 388 (977)
T ss_pred HHhccchHHHHHHHHHHHHHHHhhHhhhh------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444566788888888755552 2233331 223333444444444444444444444444333333333
No 78
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=24.91 E-value=3.8e+02 Score=25.91 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003422 278 DKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGD 314 (821)
Q Consensus 278 ~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~ 314 (821)
..-.+.+++|+++.++.++++++..++.+++++.+..
T Consensus 100 e~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 136 (144)
T PF11221_consen 100 EEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQE 136 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777777666666555554443
No 79
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=24.84 E-value=3.3e+02 Score=23.82 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003422 107 DLEVKLGDLEAELVEINANGDKLQRAHSELVEYKL 141 (821)
Q Consensus 107 eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~ 141 (821)
+|++.|..+-+++..+.++.++|+++-+-|.+|..
T Consensus 27 ~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~ 61 (80)
T PF10224_consen 27 ELQDSLEALSDRVEEVKEENEKLESENEYLQQYIG 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555444444443
No 80
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=24.50 E-value=1.8e+02 Score=27.24 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003422 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQ 144 (821)
Q Consensus 106 ~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~ 144 (821)
+++.+..+.+.+++..+.+++..++..+.++..-+..|+
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~ 40 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLE 40 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888888888877666553
No 81
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=24.36 E-value=3.2e+02 Score=23.33 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQK 145 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~ 145 (821)
+++||..++..-+.+..+..++++|+.+...+.+....|..
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~ 46 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKE 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46677777666666777777777777766666555544443
No 82
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=24.26 E-value=2.7e+02 Score=22.76 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELV 137 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~ 137 (821)
+++|++.+..++.+...+...++.|..+...|.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555444443
No 83
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=24.04 E-value=2e+02 Score=33.63 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003422 64 TYAAQIKKCAEMARKLRFFKEQMLKAGILSS-VKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYK 140 (821)
Q Consensus 64 ~~~~~v~rceE~e~kl~fl~~~l~k~~i~~~-~~~~~~~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~ 140 (821)
.+++.+..|||..++|..+...+.+..+... ...++.+. +.+.+++..+.++.+..++.+.++..+++..
T Consensus 414 ~lt~~~~~~ee~l~~Lt~~l~~l~~~~i~~~~~~l~~dk~-------~~~~~vnn~ki~l~~~ieki~~~l~~lqe~l 484 (543)
T COG1315 414 ELTEEISLHEERLKKLTKLLVALVKVKIESKKNILPPDKE-------SLLTAVNNTKITLRNSIEKIKAELEGLQEEL 484 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcH-------HHHHhhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999888777776422211 11122222 2333444455555666666666666665543
No 84
>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function.
Probab=23.85 E-value=41 Score=30.14 Aligned_cols=12 Identities=50% Similarity=1.165 Sum_probs=7.8
Q ss_pred CCCCCCCCccccccCce
Q 003422 10 GGCCPPMDLFRSEPMQL 26 (821)
Q Consensus 10 ~~~~~~~s~fRSe~M~~ 26 (821)
|||||.+ ++||+
T Consensus 19 GGCCDGS-----aPmC~ 30 (95)
T PF05610_consen 19 GGCCDGS-----APMCY 30 (95)
T ss_pred CCCCCCC-----cceeE
Confidence 5688875 46654
No 85
>PRK00736 hypothetical protein; Provisional
Probab=23.82 E-value=3.4e+02 Score=22.84 Aligned_cols=34 Identities=12% Similarity=0.269 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVE 138 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e 138 (821)
+++||..+.-.+.-+.++++-+.+-.+.+.++..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ 40 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRK 40 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554444444444444444444444444443
No 86
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=23.59 E-value=7e+02 Score=24.37 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003422 103 NNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQK 145 (821)
Q Consensus 103 ~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~ 145 (821)
.+++++.++++.+.+++..+..++..|+..+.++.+-+.-|+.
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~ 48 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLEN 48 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888888888888888877777766554443
No 87
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=23.59 E-value=4.2e+02 Score=26.74 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003422 102 DNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLV 142 (821)
Q Consensus 102 ~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~v 142 (821)
+.+-.++++.+.+....+..+.++.+.+.+..++..|..++
T Consensus 142 eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~~ne~~~~ 182 (192)
T COG5374 142 EADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQ 182 (192)
T ss_pred hcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33445566666555555566666665555555555554443
No 88
>PRK10869 recombination and repair protein; Provisional
Probab=23.19 E-value=5.1e+02 Score=31.02 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 003422 70 KKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINAN 125 (821)
Q Consensus 70 ~rceE~e~kl~fl~~~l~k~~i~~~~~~~~~~~~~l~eLe~~l~~le~~l~~l~~~ 125 (821)
.|+++++.++..+.+...|++.+ ++++-+..+++++++.++.+.
T Consensus 296 ~~l~~ie~Rl~~l~~L~rKyg~~------------~~~~~~~~~~l~~eL~~L~~~ 339 (553)
T PRK10869 296 NRLAELEQRLSKQISLARKHHVS------------PEELPQHHQQLLEEQQQLDDQ 339 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC------------HHHHHHHHHHHHHHHHHhhCC
Confidence 34566666666666666666533 345555444555554444443
No 89
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.03 E-value=38 Score=30.21 Aligned_cols=13 Identities=46% Similarity=1.035 Sum_probs=8.9
Q ss_pred CCCCCCCCccccccCceE
Q 003422 10 GGCCPPMDLFRSEPMQLV 27 (821)
Q Consensus 10 ~~~~~~~s~fRSe~M~~~ 27 (821)
|||||.+ .+||+=
T Consensus 33 GGCCDGS-----sPMCYP 45 (116)
T COG3564 33 GGCCDGS-----SPMCYP 45 (116)
T ss_pred CCccCCC-----CCcccc
Confidence 5788875 577763
No 90
>PRK04863 mukB cell division protein MukB; Provisional
Probab=22.96 E-value=1.3e+03 Score=31.35 Aligned_cols=50 Identities=18% Similarity=0.070 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 003422 99 TRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGE 148 (821)
Q Consensus 99 ~~~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~~~~ 148 (821)
...+.+.++|+..+++..+++.+..+++.+++++++.++.....+++..+
T Consensus 431 ~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~ 480 (1486)
T PRK04863 431 GLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQ 480 (1486)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567889999999999999999999888888888888877665554433
No 91
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.56 E-value=82 Score=29.77 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=10.1
Q ss_pred HHHHHHHHhhchh
Q 003422 423 FPFLFAVMFGDWG 435 (821)
Q Consensus 423 fp~fFG~MfgD~G 435 (821)
..+.||+|.|=+|
T Consensus 67 ~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 67 IGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 5677888888776
No 92
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=22.47 E-value=2.4e+02 Score=22.50 Aligned_cols=33 Identities=9% Similarity=0.246 Sum_probs=22.7
Q ss_pred HHHHHHhhhcCCchhhhhhhhhHHHHHHHHHHHHHHHH
Q 003422 564 ILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLI 601 (821)
Q Consensus 564 ~l~~~n~~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i 601 (821)
+++.++.+|+|+...+.+..+. ...|||..++.
T Consensus 10 ~~g~~rslK~KN~l~i~F~~~t-----~~VFGwFtimT 42 (52)
T PF10958_consen 10 AFGVLRSLKNKNFLGIGFALVT-----VAVFGWFTIMT 42 (52)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH-----HHHHHHHHHHH
Confidence 4577888899998887766554 23467776553
No 93
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.41 E-value=2e+02 Score=33.83 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=20.1
Q ss_pred CCCcccccCccchhHHHHHH----hhcCCCCC
Q 003422 384 SPPTYFRTNKFTSAFQEIVD----AYGVAKYR 411 (821)
Q Consensus 384 ~pPt~l~n~~~~~pFe~lv~----~Yg~P~Y~ 411 (821)
-+|+.|- +...-|||.+++ .|-+|+-+
T Consensus 447 avPviLg-~~~~LPyqd~idWrraal~lPkaR 477 (907)
T KOG2264|consen 447 AVPVILG-NSQLLPYQDLIDWRRAALRLPKAR 477 (907)
T ss_pred CeeEEec-cccccchHHHHHHHHHhhhCCccc
Confidence 4899998 566669999986 56677654
No 94
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=22.25 E-value=1.3e+03 Score=26.96 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003422 102 DNNTDDLEVKLGDLEAELVEINANGDKLQRAHSE 135 (821)
Q Consensus 102 ~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~e 135 (821)
.--++++..+++..|+++..+.++.+.|++++..
T Consensus 329 ~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 329 PGKLEKLKSEIELKEEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3457788888888888888888888888876653
No 95
>PRK00295 hypothetical protein; Provisional
Probab=22.23 E-value=3.8e+02 Score=22.54 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELV 137 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~ 137 (821)
+.+||..+.-.+.-+.++++-+.+..+.++++.
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~ 39 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQ 39 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333334444444444444443333
No 96
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.14 E-value=5.6e+02 Score=24.02 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003422 100 RADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (821)
Q Consensus 100 ~~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~ 139 (821)
+.+....++++.++.++.++..+.++.+.+++++.++...
T Consensus 68 d~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~ 107 (121)
T PRK09343 68 DKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAK 107 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666666666777777777777777766666554
No 97
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=22.04 E-value=2.7e+02 Score=25.66 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003422 107 DLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQ 144 (821)
Q Consensus 107 eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~ 144 (821)
++-+.+.++++++.++.+++.+|++...++.|.=..|+
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666666655444433
No 98
>PRK00295 hypothetical protein; Provisional
Probab=21.77 E-value=4.9e+02 Score=21.88 Aligned_cols=14 Identities=14% Similarity=0.420 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 003422 71 KCAEMARKLRFFKE 84 (821)
Q Consensus 71 rceE~e~kl~fl~~ 84 (821)
|++++|-++.|.++
T Consensus 6 Ri~~LE~kla~qE~ 19 (68)
T PRK00295 6 RVTELESRQAFQDD 19 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555544
No 99
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.62 E-value=2.9e+02 Score=29.71 Aligned_cols=49 Identities=22% Similarity=0.198 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003422 103 NNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFS 151 (821)
Q Consensus 103 ~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~~~~~l~ 151 (821)
..+++.++++++.++++.++.+++.+.+.++.+++..+..+.+.-.++.
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888888888888888888888888877777655544
No 100
>KOG2909 consensus Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]
Probab=21.59 E-value=1.2e+03 Score=26.20 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhhhhhhccCCCCcCCCCccccccC
Q 003422 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMS 185 (821)
Q Consensus 106 ~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pLl~~~e~~ 185 (821)
+.+..++.+++..++.-.++.+.++.+++.++..+ +..+. +++|..+.... +..
T Consensus 124 d~I~~e~~qie~Dlk~r~a~yn~ak~nl~nlerK~-----~GsL~----------~rsL~~IVk~e-----------dfv 177 (381)
T KOG2909|consen 124 DLISKEIAQIENDLKTRAAAYNNAKGNLQNLERKK-----TGSLS----------TRSLADIVKKE-----------DFV 177 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhc-----cCChh----------hhhHHHhCCch-----------hhc
Confidence 34444555666666666666666666666554321 12221 12333333221 100
Q ss_pred CCCCCcceEEEEEEEEcCCchHHHHHHHHHhhcCc
Q 003422 186 ADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGN 220 (821)
Q Consensus 186 ~~~~~~~~~~~~~G~I~~~~~~~f~~~l~r~~~gn 220 (821)
..+.++....=.||+.....|.+. |+..-++
T Consensus 178 ---l~SEyL~tllVvVPK~~~~df~~~-YEtlsd~ 208 (381)
T KOG2909|consen 178 ---LDSEYLTTLLVVVPKALVKDFLKS-YETLSDM 208 (381)
T ss_pred ---cchhhheeEEEEeeccchHHHHHH-HHhhccc
Confidence 113467777779999999999876 4444344
No 101
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=21.56 E-value=7.9e+02 Score=30.27 Aligned_cols=219 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCC------------------CCCCCCCCCCHHHHHHHHHHHHHHHH
Q 003422 59 SPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSS------------------VKSTTRADNNTDDLEVKLGDLEAELV 120 (821)
Q Consensus 59 ~~~~r~~~~~v~rceE~e~kl~fl~~~l~k~~i~~~------------------~~~~~~~~~~l~eLe~~l~~le~~l~ 120 (821)
+.+++-+.+.-...+.....+.-+.+++...|+... .....++ +++|.++.-.+.+..
T Consensus 1015 sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~AD~gAeeRA~~RRDELh~~Lst~RsRr----~~~EkqlT~~E~E~~ 1090 (1480)
T COG3096 1015 SQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERARIRRDELHAQLSTNRSRR----NQLEKQLTFCEAEMD 1090 (1480)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCcCcchHHHHHHHHHHHHHHHhccHhHH----HHHHHHHHHHHHHHH
Q ss_pred HHHhhHHHHHHHHHHHHH--------HHHHHHHHhhhhhhhhhhHHHHHhhhhhhccCCCCcCCCCccccccCCCCCCcc
Q 003422 121 EINANGDKLQRAHSELVE--------YKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQI 192 (821)
Q Consensus 121 ~l~~~~~~L~~~~~eL~e--------~~~vL~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pLl~~~e~~~~~~~~~ 192 (821)
.++.++.++++.+.++.+ |..|++-+++ +++...++.-...++..+|.-..+ .+
T Consensus 1091 ~L~~~~rK~ErDY~~~Re~VV~AK~~WC~VmRl~r~----------------n~vErRL~rRElAYlsaDELRSMS--DK 1152 (1480)
T COG3096 1091 NLTRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKD----------------NGVERRLHRRELAYLSADELRSMS--DK 1152 (1480)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhhcchhhhhhhhhc----------------ccHHHHHHHHHhhhcCHHHHhhhh--HH
Q ss_pred eEEEEEEEEcCCchHHHHHHHHHhhcCcEEEEeeccCCccccCCCCcccceEEEEEEEeChhhHHHHHHhhhccCcEEee
Q 003422 193 KLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYSGERAKNKILKICDAFGANRYP 272 (821)
Q Consensus 193 ~~~~~~G~I~~~~~~~f~~~l~r~~~gn~~~~~~~i~~~~~~~~~~~~~~k~v~vi~~~~~~~~~~v~~i~~~~~~~~~~ 272 (821)
.++.. .....+-+.++..+ |.++++ ...+.|.-|.|..+- ..+++++. +
T Consensus 1153 aLGAL--R~AVAdNE~LRD~L-R~SED~-----------------~rPE~Kv~F~IAVYQ-HLRERIRQ----------D 1201 (1480)
T COG3096 1153 ALGAL--RLAVADNEHLRDVL-RLSEDP-----------------KRPERKIQFFIAVYQ-HLRERIRQ----------D 1201 (1480)
T ss_pred HHHHH--HHHhcchHHHHHHH-hhccCC-----------------CCcchhhhhHHHHHH-HHHHHHHh----------h
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003422 273 FNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLN 334 (821)
Q Consensus 273 ~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~~l~ 334 (821)
+ -..+.|-+++++.+-++..+..++..-++.+.-.-+.....+ +..+.+|......+|
T Consensus 1202 I-IrTDDPveAIEqMEiEL~RLTeELT~REqkLAISS~SVanIi---RKTIqREQNRIRMLN 1259 (1480)
T COG3096 1202 I-IRTDDPVEAIEQMEIELSRLTEELTSREQKLAISSRSVANII---RKTIQREQNRIRMLN 1259 (1480)
T ss_pred h-hccCChHHHHHHHHHHHHHHHHHHhhHHHhhhcchHHHHHHH---HHHHHHHHHHHHHHH
No 102
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.55 E-value=7e+02 Score=23.66 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003422 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKL 141 (821)
Q Consensus 104 ~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~ 141 (821)
.+.++.+.++.+.+++..+.+++..++..+.++..-+.
T Consensus 7 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e 44 (140)
T PRK03947 7 ELEELAAQLQALQAQIEALQQQLEELQASINELDTAKE 44 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666666666666666666665554443
No 103
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.52 E-value=1.6e+02 Score=29.84 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003422 110 VKLGDLEAELVEINANGDKLQRAHSELVEYKL 141 (821)
Q Consensus 110 ~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~ 141 (821)
++.++..+++.++.+++++.+++.+.++++..
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555554443
No 104
>KOG2829 consensus E2F-like protein [Transcription]
Probab=21.10 E-value=9.3e+02 Score=26.24 Aligned_cols=112 Identities=11% Similarity=0.016 Sum_probs=56.1
Q ss_pred CCCCCccccccCceEE------EEeccCcHHHHHHHHhccCcEEEecCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003422 13 CPPMDLFRSEPMQLVQ------IIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQM 86 (821)
Q Consensus 13 ~~~~s~fRSe~M~~~~------Li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~r~~~~~v~rceE~e~kl~fl~~~l 86 (821)
-+.+.++|.=.|+-+. ...=.|.|+++|.+--.-...-+++.|... .+ -.+--||.-+.+.-+.-+ +.+
T Consensus 40 ~k~g~gLRhfs~kVCeKve~Kg~TtYneVADelVaef~~~n~~~~i~~n~~~--yd--~KNIRRRVYDALNVlmAm-nII 114 (326)
T KOG2829|consen 40 DKAGGGLRHFSMKVCEKVERKGTTTYNEVADELVAEFAGANNYSHICPNEQE--YD--QKNIRRRVYDALNVLMAM-NII 114 (326)
T ss_pred CCCCcchhhhhHHHHHHHHhcCCccHHHHHHHHHHHHhccccccccCccccc--cc--hHHHHHHHHHHHHHHHHH-HHH
Confidence 3445667776655333 445568899999988777766566665421 11 122234444444433333 334
Q ss_pred HHcCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003422 87 LKAGILSS-VKSTTRADNNTDDLEVKLGDLEAELVEINANGDKL 129 (821)
Q Consensus 87 ~k~~i~~~-~~~~~~~~~~l~eLe~~l~~le~~l~~l~~~~~~L 129 (821)
.|.+..++ ..++.....++++++++-.+..+++.+..+..++|
T Consensus 115 sKdKKEIrW~GLP~~ss~dv~~le~Er~k~~erI~kK~a~lqEl 158 (326)
T KOG2829|consen 115 SKDKKEIRWIGLPATSSQDVSELEEERKKRMERIKKKAAQLQEL 158 (326)
T ss_pred hcccceeeeeccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44332221 12233344566666666555444444443333333
No 105
>PRK04325 hypothetical protein; Provisional
Probab=21.08 E-value=3.9e+02 Score=22.83 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=7.2
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 003422 119 LVEINANGDKLQRAHSEL 136 (821)
Q Consensus 119 l~~l~~~~~~L~~~~~eL 136 (821)
+.++...+++|++++..+
T Consensus 32 v~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 32 VARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444443333
No 106
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=21.05 E-value=3.3e+02 Score=28.66 Aligned_cols=8 Identities=25% Similarity=0.513 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 003422 72 CAEMARKL 79 (821)
Q Consensus 72 ceE~e~kl 79 (821)
|++++.++
T Consensus 94 i~~lE~~l 101 (237)
T PF00261_consen 94 IEELEQQL 101 (237)
T ss_dssp HHHCHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 107
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=21.01 E-value=1.6e+02 Score=32.92 Aligned_cols=45 Identities=24% Similarity=0.339 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 003422 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGE 148 (821)
Q Consensus 104 ~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~~~~ 148 (821)
.+..|.+++.++..++-.+..++++|+++.++|...+.++++--+
T Consensus 5 lls~ls~el~~i~~ei~~id~qiqel~~kkqel~qkkk~i~kkie 49 (695)
T KOG0353|consen 5 LLSALSEELADIDGEIGAIDIQIQELREKKQELIQKKKAIEKKIE 49 (695)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788888888889999999999999999999888888776544
No 108
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=21.01 E-value=7.3e+02 Score=25.15 Aligned_cols=34 Identities=24% Similarity=0.110 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003422 107 DLEVKLGDLEAELVEINANGDKLQRAHSELVEYK 140 (821)
Q Consensus 107 eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~ 140 (821)
+++++++++.+.+..+++++..|+-+.+.+++..
T Consensus 134 ~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~ 167 (194)
T PF08614_consen 134 DLEEELKEKNKANEILQDELQALQLQLNMLEEKL 167 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444433
No 109
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.87 E-value=3.7e+02 Score=33.72 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHH
Q 003422 69 IKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVK 111 (821)
Q Consensus 69 v~rceE~e~kl~fl~~~l~k~~i~~~~~~~~~~~~~l~eLe~~ 111 (821)
-.|.||++-.|.-|+.+++..|-.. +....+.+.+||.+
T Consensus 338 kEr~deletdlEILKaEmeekG~~~----~~~ss~qfkqlEqq 376 (1243)
T KOG0971|consen 338 KERVDELETDLEILKAEMEEKGSDG----QAASSYQFKQLEQQ 376 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC----cccchHHHHHHHHH
Confidence 4688999999999999998655332 12344555555553
No 110
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=20.63 E-value=2.9e+02 Score=25.66 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhhhHHHH
Q 003422 725 ASYLRLWALSLAHSELS 741 (821)
Q Consensus 725 lSYlRL~Al~LAh~~La 741 (821)
+-=.|.|||+|--+++.
T Consensus 8 iN~~R~~al~lif~g~~ 24 (114)
T PF11023_consen 8 INKIRTFALSLIFIGMI 24 (114)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34579999998766655
No 111
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=20.60 E-value=2.9e+02 Score=30.61 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=17.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003422 101 ADNNTDDLEVKLGDLEAELVEINANGDKLQR 131 (821)
Q Consensus 101 ~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~ 131 (821)
...++|++.+.|.+++.+++++..++.+|++
T Consensus 287 TRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 287 TRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445666666666655555555555554443
No 112
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=20.60 E-value=2.6e+02 Score=24.85 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003422 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELV 137 (821)
Q Consensus 104 ~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~ 137 (821)
+++++.+++++.++++.+...+...|+.+...+.
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888888888887775
No 113
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=20.50 E-value=4.8e+02 Score=21.91 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLV 142 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~v 142 (821)
+..|++.++++-....++..+...|+.+...+...+..
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~ 39 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQ 39 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555554443
No 114
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.26 E-value=3e+02 Score=24.94 Aligned_cols=32 Identities=19% Similarity=0.439 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003422 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSE 135 (821)
Q Consensus 104 ~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~e 135 (821)
+.+++-++..++.+++.++.+....+++++++
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666655555555555555555555443
No 115
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.21 E-value=2.3e+02 Score=28.46 Aligned_cols=18 Identities=0% Similarity=0.252 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003422 70 KKCAEMARKLRFFKEQML 87 (821)
Q Consensus 70 ~rceE~e~kl~fl~~~l~ 87 (821)
++.+++++++......+.
T Consensus 95 ~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 95 EELDQLQERIQELESELE 112 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 116
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=20.14 E-value=2.2e+02 Score=23.46 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003422 279 KQAQAISEVSGRLSELKTTLDAGLLHRG 306 (821)
Q Consensus 279 ~~~~~l~~l~~~i~~~~~~l~~~~~~~~ 306 (821)
+..+++..+++++++.+++.+..+.+.+
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777666555544
No 117
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=20.05 E-value=2e+02 Score=23.72 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003422 107 DLEVKLGDLEAELVEINANGDKLQRAHSEL 136 (821)
Q Consensus 107 eLe~~l~~le~~l~~l~~~~~~L~~~~~eL 136 (821)
.+|+.+..+|+++.+..++.++.+++.+..
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 377788888888888777777777666543
No 118
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=20.01 E-value=7.8e+02 Score=29.49 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Q 003422 70 KKCAEMARKLRFFKEQMLKAGIL 92 (821)
Q Consensus 70 ~rceE~e~kl~fl~~~l~k~~i~ 92 (821)
.|+++++.++.-+.....|++.+
T Consensus 297 ~~L~~ve~Rl~~L~~l~RKY~~~ 319 (557)
T COG0497 297 NRLEEVEERLFALKSLARKYGVT 319 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 35666666666666666666654
Done!