Query 003422
Match_columns 821
No_of_seqs 204 out of 960
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 00:39:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rrk_A V-type ATPase 116 kDa s 100.0 3.7E-45 1.3E-49 406.2 32.4 340 16-414 6-357 (357)
2 2nvj_A 25MER peptide from vacu 99.0 9.1E-12 3.1E-16 79.6 -2.7 26 715-740 1-26 (26)
3 2jtw_A Transmembrane helix 7 o 98.8 3.5E-09 1.2E-13 67.2 2.5 21 721-741 2-22 (26)
4 3rrk_A V-type ATPase 116 kDa s 72.2 8.7 0.0003 41.4 8.5 87 103-222 226-313 (357)
5 2lqh_B Forkhead box O3, FOXO3A 71.7 1 3.5E-05 32.5 0.0 15 11-25 37-51 (52)
6 2l5g_B Putative uncharacterize 63.6 18 0.0006 26.3 5.5 34 106-139 5-38 (42)
7 1u7l_A Vacuolar ATP synthase s 58.3 2.1E+02 0.0072 31.1 24.9 115 191-320 188-304 (392)
8 1kd8_A GABH AIV, GCN4 acid bas 57.5 22 0.00076 24.7 4.9 30 105-134 3-32 (36)
9 2akf_A Coronin-1A; coiled coil 57.1 24 0.00082 23.3 4.8 27 114-140 3-29 (32)
10 3nmd_A CGMP dependent protein 54.8 30 0.001 28.3 6.3 41 103-143 19-59 (72)
11 1kd8_B GABH BLL, GCN4 acid bas 52.4 33 0.0011 23.9 5.1 28 105-132 3-30 (36)
12 2wq1_A General control protein 50.9 27 0.00093 23.8 4.4 24 115-138 5-28 (33)
13 2oqq_A Transcription factor HY 49.6 56 0.0019 23.6 6.2 32 105-136 5-36 (42)
14 2oqq_A Transcription factor HY 49.3 57 0.0019 23.6 6.2 35 111-145 4-38 (42)
15 3twe_A Alpha4H; unknown functi 48.4 29 0.00099 21.8 4.0 21 113-133 4-24 (27)
16 3c3f_A Alpha/beta peptide with 43.5 36 0.0012 23.3 4.2 23 115-137 6-28 (34)
17 3m48_A General control protein 42.3 32 0.0011 23.6 3.8 24 115-138 5-28 (33)
18 2r2v_A GCN4 leucine zipper; co 41.4 54 0.0018 22.6 4.8 25 105-129 3-27 (34)
19 2wuj_A Septum site-determining 39.7 26 0.00089 27.3 3.6 38 101-138 18-55 (57)
20 1uo4_A General control protein 38.8 41 0.0014 23.1 3.9 24 115-138 6-29 (34)
21 2zdi_C Prefoldin subunit alpha 38.5 2.4E+02 0.0082 26.0 11.6 39 104-142 10-48 (151)
22 3c3g_A Alpha/beta peptide with 37.2 53 0.0018 22.4 4.2 25 114-138 4-28 (33)
23 2akf_A Coronin-1A; coiled coil 35.7 53 0.0018 21.7 3.9 28 106-133 2-29 (32)
24 3a7p_A Autophagy protein 16; c 35.6 1.6E+02 0.0054 27.6 8.8 50 105-154 84-134 (152)
25 3oja_B Anopheles plasmodium-re 34.8 93 0.0032 35.5 9.0 7 10-16 390-396 (597)
26 2yy0_A C-MYC-binding protein; 34.8 32 0.0011 26.4 3.3 36 99-134 15-50 (53)
27 3c3g_A Alpha/beta peptide with 32.9 85 0.0029 21.5 4.6 29 105-133 2-30 (33)
28 2wq1_A General control protein 32.7 79 0.0027 21.6 4.5 28 105-132 2-29 (33)
29 1gk6_A Vimentin; intermediate 31.6 1.4E+02 0.0049 23.1 6.8 46 286-332 4-49 (59)
30 2oxj_A Hybrid alpha/beta pepti 31.6 82 0.0028 21.7 4.4 26 113-138 4-29 (34)
31 2xv5_A Lamin-A/C; structural p 30.6 2.2E+02 0.0076 23.2 8.8 51 282-333 5-55 (74)
32 2lw1_A ABC transporter ATP-bin 30.5 1.5E+02 0.0053 24.8 7.4 29 112-140 58-86 (89)
33 2ns1_B Nitrogen regulatory pro 30.4 29 0.00099 30.9 2.9 28 21-48 2-29 (116)
34 2oxj_A Hybrid alpha/beta pepti 30.2 98 0.0034 21.3 4.6 28 105-132 3-30 (34)
35 2bni_A General control protein 29.8 71 0.0024 22.0 3.9 25 114-138 5-29 (34)
36 2l5g_B Putative uncharacterize 29.3 90 0.0031 22.6 4.6 25 106-130 12-36 (42)
37 3m48_A General control protein 28.9 68 0.0023 22.0 3.7 28 105-132 2-29 (33)
38 2cz4_A Hypothetical protein TT 28.8 29 0.001 31.2 2.7 38 11-48 12-49 (119)
39 1t2k_D Cyclic-AMP-dependent tr 28.5 1.2E+02 0.004 23.7 5.8 33 105-137 24-56 (61)
40 1uo4_A General control protein 28.5 1E+02 0.0034 21.3 4.5 28 105-132 3-30 (34)
41 2r2v_A GCN4 leucine zipper; co 27.4 1.3E+02 0.0043 20.8 4.8 28 112-139 3-30 (34)
42 3c3f_A Alpha/beta peptide with 27.0 1.2E+02 0.0042 20.8 4.6 30 104-133 2-31 (34)
43 2zqm_A Prefoldin beta subunit 26.9 1.7E+02 0.0057 25.5 7.4 40 102-141 69-108 (117)
44 1kd8_B GABH BLL, GCN4 acid bas 26.8 90 0.0031 21.7 4.0 28 112-139 3-30 (36)
45 1fxk_C Protein (prefoldin); ar 25.5 3.6E+02 0.012 24.0 17.1 42 104-145 2-43 (133)
46 3s4r_A Vimentin; alpha-helix, 25.4 43 0.0015 28.8 2.9 33 107-139 53-85 (93)
47 2hy6_A General control protein 25.3 93 0.0032 21.4 3.8 25 114-138 5-29 (34)
48 3nmd_A CGMP dependent protein 24.8 1E+02 0.0034 25.2 4.8 22 112-133 42-63 (72)
49 2wt7_A Proto-oncogene protein 24.5 1.8E+02 0.0063 22.7 6.3 31 106-136 26-56 (63)
50 2lw1_A ABC transporter ATP-bin 24.5 1.3E+02 0.0044 25.3 5.8 28 105-132 58-85 (89)
51 2bni_A General control protein 24.5 1.3E+02 0.0045 20.7 4.5 28 105-132 3-30 (34)
52 3efg_A Protein SLYX homolog; x 24.5 1.6E+02 0.0056 24.3 6.2 13 71-83 15-27 (78)
53 1fxk_A Prefoldin; archaeal pro 24.1 80 0.0027 27.2 4.6 38 102-139 64-101 (107)
54 1ci6_A Transcription factor AT 24.0 1.6E+02 0.0054 23.2 5.8 31 106-136 26-56 (63)
55 1t3j_A Mitofusin 1; coiled coi 23.9 2.4E+02 0.0082 24.3 7.2 23 114-136 51-73 (96)
56 1kd8_A GABH AIV, GCN4 acid bas 23.6 1.4E+02 0.0047 20.8 4.5 28 112-139 3-30 (36)
57 2jee_A YIIU; FTSZ, septum, coi 23.0 3.3E+02 0.011 22.7 8.3 26 114-139 10-35 (81)
58 3t98_B Nucleoporin NUP58/NUP45 22.3 3.7E+02 0.013 22.9 9.2 41 101-141 42-82 (93)
59 1gd2_E Transcription factor PA 22.2 1.1E+02 0.0039 24.7 4.7 33 105-137 31-63 (70)
60 2o66_A PII protein; regulation 22.1 60 0.0021 29.8 3.5 32 17-48 6-37 (135)
61 3okq_A BUD site selection prot 22.0 4.7E+02 0.016 24.1 11.4 75 70-153 21-105 (141)
62 3efg_A Protein SLYX homolog; x 21.9 2.5E+02 0.0085 23.1 6.9 34 106-139 17-50 (78)
63 1ykh_B RNA polymerase II holoe 21.7 3.5E+02 0.012 24.6 8.5 38 277-314 87-124 (132)
64 1x8y_A Lamin A/C; structural p 21.4 3.6E+02 0.012 22.5 8.8 51 281-332 27-77 (86)
65 2yko_A LINE-1 ORF1P; RNA-bindi 21.4 1.8E+02 0.006 29.3 6.9 38 104-141 7-44 (233)
66 1yke_B RNA polymerase II holoe 21.4 3.3E+02 0.011 25.4 8.5 37 277-313 87-123 (151)
67 2hy6_A General control protein 21.2 1.7E+02 0.0058 20.1 4.5 29 105-133 3-31 (34)
68 3mq7_A Bone marrow stromal ant 21.1 1.5E+02 0.0051 26.4 5.5 22 119-140 73-94 (121)
69 2wt7_A Proto-oncogene protein 20.8 2.3E+02 0.0078 22.2 6.2 33 111-143 24-56 (63)
70 1gk4_A Vimentin; intermediate 20.8 3.6E+02 0.012 22.3 8.8 52 281-333 25-76 (84)
71 3ghg_A Fibrinogen alpha chain; 20.7 1.6E+02 0.0054 33.1 6.9 40 106-145 113-152 (562)
72 2jee_A YIIU; FTSZ, septum, coi 20.5 3.7E+02 0.013 22.4 7.5 13 105-117 8-20 (81)
73 3hnw_A Uncharacterized protein 20.4 2.3E+02 0.0078 26.0 7.0 6 27-32 19-24 (138)
74 1ci6_A Transcription factor AT 20.1 2.4E+02 0.0083 22.1 6.2 33 111-143 24-56 (63)
75 1gmj_A ATPase inhibitor; coile 20.0 1.8E+02 0.0061 24.4 5.5 30 109-138 50-79 (84)
76 3bzq_A Nitrogen regulatory pro 20.0 61 0.0021 28.6 3.0 26 23-48 2-27 (114)
No 1
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=100.00 E-value=3.7e-45 Score=406.17 Aligned_cols=340 Identities=14% Similarity=0.134 Sum_probs=243.1
Q ss_pred CCccccccCceEEEEeccCcHHHHHHHHhccCcEEEecCCCCCChhh--hhhH-HHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003422 16 MDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQ--RTYA-AQIKKCAEMARKLRFFKEQMLKAGIL 92 (821)
Q Consensus 16 ~s~fRSe~M~~~~Li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~--r~~~-~~v~rceE~e~kl~fl~~~l~k~~i~ 92 (821)
+-|+||++|++++|++|++.+++++++||++|+|||+|++++.+.++ +++. +++++|+++.++++++.+++.+...+
T Consensus 6 ~~~~~pekM~kv~l~~~~~~~~~vl~~L~~lg~vhi~d~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~L~~~~~~ 85 (357)
T 3rrk_A 6 GTIDDDDKMEKLIVAGPKRLARELLAELQKAGVVHIDPLRPDELGEYRLSPTEEAELKRWEAVVSQAEQSLTVVGLATVP 85 (357)
T ss_dssp --------CEEEEEEECGGGHHHHHHHHHHHTCEEEEEECGGGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCChhheEEEEEEeEHHHHHHHHHHHHHcCcEEEEeccccccccccCCccchHHHhHHHHHHHHHHHHHHHhcccccc
Confidence 35899999999999999999999999999999999999998777776 5654 68999999999999999999876422
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHHHhhhhhhccCC
Q 003422 93 SSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFF-SSALTSAAAQQREMESQQTGE 171 (821)
Q Consensus 93 ~~~~~~~~~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~~~~~l-~~~~~~~~~~~~~~~~~~~~~ 171 (821)
. .++...+++++++.++++++++.++.+++++|+++++++++.+.+++....|- + +
T Consensus 86 ~----~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~~~-------------------l 142 (357)
T 3rrk_A 86 S----SKPFTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALAHG-------------------L 142 (357)
T ss_dssp C----SSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-------------------T
T ss_pred c----ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcc-------------------C
Confidence 1 01223458999999999999999999999999999999999977777666652 2 0
Q ss_pred CCcCCCCccccccCCCCCCcceEEEEEEEE-cCCchHHHHHHHHHhhcCcEEEEeeccCCccccCCCCcccceEEEEEEE
Q 003422 172 MTIETPLLTDKEMSADPSKQIKLGFIAGLV-PREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFY 250 (821)
Q Consensus 172 ~~~~~pLl~~~e~~~~~~~~~~~~~~~G~I-~~~~~~~f~~~l~r~~~gn~~~~~~~i~~~~~~~~~~~~~~k~v~vi~~ 250 (821)
+ . ..++.+++|+| |+++.++|++.+++++++..+... ++...+.+ ++++
T Consensus 143 ---d---~-----------~~~~g~~~g~ip~~~~~~~~~~~l~~~~~~~~~~~~------------~~~~~~~~-~vv~ 192 (357)
T 3rrk_A 143 ---D---E-----------SPRLGVIPFLVAKPEELEAVRKALQEALADRFVLEA------------EPLENQLA-ALVV 192 (357)
T ss_dssp ---T---T-----------CTTEEEEEEEESCHHHHHHHHHHHHHHHTTSCEEEE------------EECSSSEE-EEEE
T ss_pred ---C---c-----------cceeeeeeEEecChhhHHHHHHHHHHhcCCeEEEEe------------ecCCCcEE-EEEE
Confidence 1 1 34689999999 788999999999999888432211 11122344 4444
Q ss_pred eChhhHHHHHHhhhccCcEEeeCCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003422 251 SGERAKNKILKICDAFGANRYPFNEEFD--KQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKS 328 (821)
Q Consensus 251 ~~~~~~~~v~~i~~~~~~~~~~~p~~~~--~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~ 328 (821)
++++..++++++|+++||+++++|+..+ +|.+.++++++++++++++++++++++++..+.+...+..|...+.++++
T Consensus 193 ~~~~~~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~ 272 (357)
T 3rrk_A 193 VKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVA 272 (357)
T ss_dssp EEGGGHHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999998777 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccCcEEEEEEEeeccchh--HHHHHhHhhcCCCceEEEEEecCCC---CCCCcccccCccchhHHHHHH
Q 003422 329 IYHTLNMLSLDVTKKCLVGEGWSPVFATK--QDALERAAFDSNSQVGAIFQVLHTK---ESPPTYFRTNKFTSAFQEIVD 403 (821)
Q Consensus 329 i~~~l~~~~~~~t~~~~~~~GWvP~~~~~--~~~L~~~~~~~~~~~~~~~~~~~~~---~~pPt~l~n~~~~~pFe~lv~ 403 (821)
+|++++ .++.|+++++++||||+++++ +++|++ .+..+.+.+.+++++ +.|||+++||+|++|||.||+
T Consensus 273 ~~~~~~--~~~~~~~~~~~~gWvp~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~pPt~l~n~~~~~~fe~iv~ 346 (357)
T 3rrk_A 273 RYKAVA--DMAAGKYGAALMGWVPQKAKGKVEEALGR----LRDQIVYTFEPVDEHHESHQVPVTLENPAWAKPFELLHG 346 (357)
T ss_dssp HHHHHH--HHHTTCCSEEEEEEECTTTHHHHHHTCCS----SCEEEEC--------------------------------
T ss_pred HHHHHH--hhcccCcEEEEEEEeeHHHHHHHHHHHHh----cCCceEEEEecCCccccCCCcCEeccCCchhhHHHHHHH
Confidence 999999 567889999999999999999 555554 234566667777666 689999999999999999999
Q ss_pred hhcCCCCCccC
Q 003422 404 AYGVAKYREAN 414 (821)
Q Consensus 404 ~Yg~P~Y~EiD 414 (821)
|||+|+|+|+|
T Consensus 347 ~Yg~p~Y~EiD 357 (357)
T 3rrk_A 347 FLNTPAYGSHD 357 (357)
T ss_dssp -----------
T ss_pred hcCCCCCCCCC
Confidence 99999999998
No 2
>2nvj_A 25MER peptide from vacuolar ATP synthase subunit A, vacuolar isoform; ALFA helix, 3,10 helix, PI helix, hydrolase; NMR {Synthetic}
Probab=99.00 E-value=9.1e-12 Score=79.60 Aligned_cols=26 Identities=73% Similarity=1.120 Sum_probs=23.5
Q ss_pred HHHhhhchhhHHHHHHHHHhhhhHHH
Q 003422 715 EFVLGAVSNTASYLRLWALSLAHSEL 740 (821)
Q Consensus 715 e~vl~~~sntlSYlRL~Al~LAh~~L 740 (821)
|++++++|||+||+|+|||||||++|
T Consensus 1 e~~l~~is~tasylRlwaLsLah~~l 26 (26)
T 2nvj_A 1 EFCLNCVSHTASYLRLWALSLAHAQX 26 (26)
T ss_dssp CCSSSTTTTTCHHHHGGGSCSSCCC-
T ss_pred CeEEEEeCCchHHHHHHhhhcccccC
Confidence 46899999999999999999999875
No 3
>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X
Probab=98.75 E-value=3.5e-09 Score=67.23 Aligned_cols=21 Identities=81% Similarity=1.165 Sum_probs=20.0
Q ss_pred chhhHHHHHHHHHhhhhHHHH
Q 003422 721 VSNTASYLRLWALSLAHSELS 741 (821)
Q Consensus 721 ~sntlSYlRL~Al~LAh~~La 741 (821)
+|||+||+|||||||||++++
T Consensus 2 ~s~tasylRlwaLsLaH~~ls 22 (26)
T 2jtw_A 2 KSHTASYLRLWALSLAHAQLS 22 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHhhhhHHHHh
Confidence 689999999999999999987
No 4
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=72.22 E-value=8.7 Score=41.37 Aligned_cols=87 Identities=16% Similarity=0.170 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHhhhhhhccCCCCcCCCCccc
Q 003422 103 NNTDDLEVKLGDLEAELVEINANGDKLQRA-HSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTD 181 (821)
Q Consensus 103 ~~l~eLe~~l~~le~~l~~l~~~~~~L~~~-~~eL~e~~~vL~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pLl~~ 181 (821)
..+.+++++++++++++.++.+++.++.++ ...+..|...+.......+.-. . +
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~---------------~--------~-- 280 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVA---------------D--------M-- 280 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------H--------H--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------h--------h--
Confidence 345666667777777777776666666666 5556555555544333222100 0 0
Q ss_pred cccCCCCCCcceEEEEEEEEcCCchHHHHHHHHHhhcCcEE
Q 003422 182 KEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVF 222 (821)
Q Consensus 182 ~e~~~~~~~~~~~~~~~G~I~~~~~~~f~~~l~r~~~gn~~ 222 (821)
..+.++-+.-|.+|.++.+++++.+.+ +.+.++
T Consensus 281 -------~~~~~~~~~~gWvp~~~~~~~~~~l~~-~~~~~~ 313 (357)
T 3rrk_A 281 -------AAGKYGAALMGWVPQKAKGKVEEALGR-LRDQIV 313 (357)
T ss_dssp -------HTTCCSEEEEEEECTTTHHHHHHTCCS-SCEEEE
T ss_pred -------cccCcEEEEEEEeeHHHHHHHHHHHHh-cCCceE
Confidence 013355678899999999999987654 433343
No 5
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=71.70 E-value=1 Score=32.50 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=13.0
Q ss_pred CCCCCCCccccccCc
Q 003422 11 GCCPPMDLFRSEPMQ 25 (821)
Q Consensus 11 ~~~~~~s~fRSe~M~ 25 (821)
=-|||-|+.|||-|.
T Consensus 37 lecdmesiirselmd 51 (52)
T 2lqh_B 37 LECDMESIIRSELMD 51 (52)
Confidence 369999999999885
No 6
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=63.63 E-value=18 Score=26.28 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003422 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (821)
Q Consensus 106 ~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~ 139 (821)
++|-+.++++..++....+++++|++++.+|++-
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5777788888888888888888888888888764
No 7
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1
Probab=58.32 E-value=2.1e+02 Score=31.11 Aligned_cols=115 Identities=18% Similarity=0.203 Sum_probs=57.7
Q ss_pred cceEEEEEEEEcCCchHHHHHHHHHhhcCcEEEEeeccCCccccCCCCcccceEEE-EEEEeChhhHHHHHHhhhccCcE
Q 003422 191 QIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVF-VVFYSGERAKNKILKICDAFGAN 269 (821)
Q Consensus 191 ~~~~~~~~G~I~~~~~~~f~~~l~r~~~gn~~~~~~~i~~~~~~~~~~~~~~k~v~-vi~~~~~~~~~~v~~i~~~~~~~ 269 (821)
+.++...+=.||+.....|.+. |+.+-..+--+.+ ... .++.+...| |.+| +...++...-|++.+|.
T Consensus 188 SEyL~TllVvVPk~~~~dwl~~-YEtL~~~VVPrSs----~~i----~~D~ey~L~~VtlF--kk~~~eF~~~~Re~kf~ 256 (392)
T 1u7l_A 188 SEHLTTVLVAVPKSLKSDFEKS-YETLSKNVVPASA----SVI----AEDAEYVLFNVHLF--KKNVQEFTTAAREKKFI 256 (392)
T ss_dssp CSSEEEEEEEEEGGGHHHHHHH-GGGSSTTBCTTCC----EEE----EECSSEEEEEEEEE--GGGHHHHHHHHHHTTCE
T ss_pred cccceEEEEEEeCccHHHHHHH-HhhcCCCccCChh----hhh----hcCCCceEEEEEEE--hhhHHHHHHHHHHcCCc
Confidence 4577788789999999999875 4333222111100 000 011123334 3444 45678888889988887
Q ss_pred EeeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 003422 270 RYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQT-IGDQFEQWN 320 (821)
Q Consensus 270 ~~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~-~~~~l~~~~ 320 (821)
.=++--++ +.+++..+++++++.+.++....+....+. ..+....|.
T Consensus 257 vRdF~y~e----e~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awi 304 (392)
T 1u7l_A 257 PREFNYSE----ELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWF 304 (392)
T ss_dssp EECCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66653222 222333444444444443333333333332 233344454
No 8
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=57.48 E-value=22 Score=24.72 Aligned_cols=30 Identities=17% Similarity=0.432 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAHS 134 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~~ 134 (821)
+++||+.++++..+-.++.++..+|++.+.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 466666666666666666666655555443
No 9
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=57.10 E-value=24 Score=23.34 Aligned_cols=27 Identities=33% Similarity=0.314 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003422 114 DLEAELVEINANGDKLQRAHSELVEYK 140 (821)
Q Consensus 114 ~le~~l~~l~~~~~~L~~~~~eL~e~~ 140 (821)
+++++++.++.-.++|+++.+++++.-
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677778888888888888877653
No 10
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=54.78 E-value=30 Score=28.27 Aligned_cols=41 Identities=24% Similarity=0.178 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003422 103 NNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVL 143 (821)
Q Consensus 103 ~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL 143 (821)
-++.+|+..+++..+++++..+.++.|++++++.++...-|
T Consensus 19 gti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 19 GSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQML 59 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999888889888888888888888777755443
No 11
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=52.39 E-value=33 Score=23.88 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRA 132 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~ 132 (821)
+++||+.++++-.+-.++.++..+|++-
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555555555555555555444444443
No 12
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=50.91 E-value=27 Score=23.84 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Q 003422 115 LEAELVEINANGDKLQRAHSELVE 138 (821)
Q Consensus 115 le~~l~~l~~~~~~L~~~~~eL~e 138 (821)
+|+++.++..+...|+.+..++.+
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333444444445555544444433
No 13
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=49.63 E-value=56 Score=23.63 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSEL 136 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL 136 (821)
+++||+..++++.+..++.++++.|+++-..|
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mL 36 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQML 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45555555555555555555555555544433
No 14
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=49.33 E-value=57 Score=23.61 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003422 111 KLGDLEAELVEINANGDKLQRAHSELVEYKLVLQK 145 (821)
Q Consensus 111 ~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~ 145 (821)
.+.++|++.+++..+..+|+++...|...-..|++
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46788888888888888888888888776665554
No 15
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=48.42 E-value=29 Score=21.83 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q 003422 113 GDLEAELVEINANGDKLQRAH 133 (821)
Q Consensus 113 ~~le~~l~~l~~~~~~L~~~~ 133 (821)
+++++++.+++++..+|++++
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666665555544
No 16
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=43.49 E-value=36 Score=23.33 Aligned_cols=23 Identities=13% Similarity=0.149 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Q 003422 115 LEAELVEINANGDKLQRAHSELV 137 (821)
Q Consensus 115 le~~l~~l~~~~~~L~~~~~eL~ 137 (821)
+|+++.++.++.+.|+.+..+|.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Confidence 33334444444444444444443
No 17
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=42.31 E-value=32 Score=23.58 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Q 003422 115 LEAELVEINANGDKLQRAHSELVE 138 (821)
Q Consensus 115 le~~l~~l~~~~~~L~~~~~eL~e 138 (821)
+|+++.++.++.++|+++..+|.+
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444455555555556555555544
No 18
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=41.39 E-value=54 Score=22.59 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKL 129 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L 129 (821)
++++|+.++++-++..++.++..+|
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4455555544444444444444333
No 19
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=39.74 E-value=26 Score=27.26 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003422 101 ADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVE 138 (821)
Q Consensus 101 ~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e 138 (821)
+-|+.+++++-|+++.+++..+.++.++|++++.++++
T Consensus 18 rGY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 18 RGYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp TEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778899999999999999999999999988887765
No 20
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=38.82 E-value=41 Score=23.14 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Q 003422 115 LEAELVEINANGDKLQRAHSELVE 138 (821)
Q Consensus 115 le~~l~~l~~~~~~L~~~~~eL~e 138 (821)
+|+++.++.++...|+.+..+|.+
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444555555555555544443
No 21
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=38.50 E-value=2.4e+02 Score=26.00 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003422 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLV 142 (821)
Q Consensus 104 ~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~v 142 (821)
.+.++.+.++++..++..+.++++.|+....++.|....
T Consensus 10 ~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~ 48 (151)
T 2zdi_C 10 ELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRET 48 (151)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677777777777777777773333333343333
No 22
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=37.16 E-value=53 Score=22.44 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Q 003422 114 DLEAELVEINANGDKLQRAHSELVE 138 (821)
Q Consensus 114 ~le~~l~~l~~~~~~L~~~~~eL~e 138 (821)
++|+++.++.++.+.|+.+..+|++
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444555566666666666555544
No 23
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=35.74 E-value=53 Score=21.73 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003422 106 DDLEVKLGDLEAELVEINANGDKLQRAH 133 (821)
Q Consensus 106 ~eLe~~l~~le~~l~~l~~~~~~L~~~~ 133 (821)
+.+|+++.++..-+++++++.++|+...
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777776654
No 24
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.65 E-value=1.6e+02 Score=27.60 Aligned_cols=50 Identities=14% Similarity=-0.007 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-Hhhhhhhhh
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQK-AGEFFSSAL 154 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~-~~~~l~~~~ 154 (821)
+.+++++++...+.+..+++++..|+-+.+.+++...-|++ ...+++.|.
T Consensus 84 i~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 84 IRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777777777777776666665 444555554
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.81 E-value=93 Score=35.47 Aligned_cols=7 Identities=43% Similarity=1.080 Sum_probs=3.7
Q ss_pred CCCCCCC
Q 003422 10 GGCCPPM 16 (821)
Q Consensus 10 ~~~~~~~ 16 (821)
+-||+..
T Consensus 390 ~~cc~~~ 396 (597)
T 3oja_B 390 GLCCKES 396 (597)
T ss_dssp TEEEECC
T ss_pred CccccCC
Confidence 3466554
No 26
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.77 E-value=32 Score=26.42 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=24.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003422 99 TRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHS 134 (821)
Q Consensus 99 ~~~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~ 134 (821)
.|...+++.|..+.+++..++.++.++.++|++++.
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566777777777777777777777777766554
No 27
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=32.89 E-value=85 Score=21.45 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAH 133 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~ 133 (821)
+++||+.++++-.+=.++.++.++|++-+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56777777777777777777777776543
No 28
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=32.66 E-value=79 Score=21.60 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRA 132 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~ 132 (821)
+++||+.++++-.+..++.+++.+|++-
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6788888888888888888888877764
No 29
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=31.60 E-value=1.4e+02 Score=23.14 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003422 286 EVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHT 332 (821)
Q Consensus 286 ~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~~ 332 (821)
+++..+.+++.++.+++.++...+.++.. +-..+..+..|.+.|..
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~-LlniK~~Le~EIatYRk 49 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGD-LLNVKMALDIEIATYRK 49 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHH
Confidence 44555566666666555555555544433 23344556677777754
No 30
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=31.59 E-value=82 Score=21.67 Aligned_cols=26 Identities=19% Similarity=0.292 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003422 113 GDLEAELVEINANGDKLQRAHSELVE 138 (821)
Q Consensus 113 ~~le~~l~~l~~~~~~L~~~~~eL~e 138 (821)
+++|.++.++..+.+.|+++..+|.+
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34555556666666666666666654
No 31
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=30.61 E-value=2.2e+02 Score=23.24 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003422 282 QAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTL 333 (821)
Q Consensus 282 ~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~~l 333 (821)
...+..+..|.+++.++.+++.++...+.++.. +-..+..+..|.+.|..+
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~-LlniKl~Le~EIatYRkL 55 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQE-LLDIKLALDMEIHAYRKL 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 344566677777777777766666666555543 334455667777777643
No 32
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=30.48 E-value=1.5e+02 Score=24.84 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003422 112 LGDLEAELVEINANGDKLQRAHSELVEYK 140 (821)
Q Consensus 112 l~~le~~l~~l~~~~~~L~~~~~eL~e~~ 140 (821)
+.++..++.++.++++.+..++.+|++..
T Consensus 58 ~~~l~~~l~~~e~eLe~~~erWeeLe~~~ 86 (89)
T 2lw1_A 58 TQKVLADMAAAEQELEQAFERWEYLEALK 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455566677777777777777776543
No 33
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=30.36 E-value=29 Score=30.93 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=24.4
Q ss_pred cccCceEEEEeccCcHHHHHHHHhccCc
Q 003422 21 SEPMQLVQIIIPIESAHLTVSYLGELGL 48 (821)
Q Consensus 21 Se~M~~~~Li~~~e~a~~~v~~Lg~lg~ 48 (821)
|.+|+++..|++.+..+++.++|.+.|.
T Consensus 2 ~~~Mk~I~aIIr~~~~~~v~~AL~~~G~ 29 (116)
T 2ns1_B 2 PGSMKLVTVIIKPFKLEDVREALSSIGI 29 (116)
T ss_dssp --CEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CCceEEEEEEECHHHHHHHHHHHHHCCC
Confidence 5679999999999999999999999985
No 34
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=30.23 E-value=98 Score=21.28 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRA 132 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~ 132 (821)
+++||+.++++-.+=.++.++.++|+.-
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5677777777766667777777666653
No 35
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=29.77 E-value=71 Score=22.00 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Q 003422 114 DLEAELVEINANGDKLQRAHSELVE 138 (821)
Q Consensus 114 ~le~~l~~l~~~~~~L~~~~~eL~e 138 (821)
++|+++.++.++.+.|+.+..+|++
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3444455555555555555555544
No 36
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=29.32 E-value=90 Score=22.63 Aligned_cols=25 Identities=12% Similarity=0.372 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHH
Q 003422 106 DDLEVKLGDLEAELVEINANGDKLQ 130 (821)
Q Consensus 106 ~eLe~~l~~le~~l~~l~~~~~~L~ 130 (821)
+.+..++.+.++++.++..+...|+
T Consensus 12 ~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 12 DRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 37
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=28.92 E-value=68 Score=21.96 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRA 132 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~ 132 (821)
+++||+.++++-.+-.++.++..+|++-
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5677777777777777777777777654
No 38
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=28.82 E-value=29 Score=31.22 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=27.6
Q ss_pred CCCCCCCccccccCceEEEEeccCcHHHHHHHHhccCc
Q 003422 11 GCCPPMDLFRSEPMQLVQIIIPIESAHLTVSYLGELGL 48 (821)
Q Consensus 11 ~~~~~~s~fRSe~M~~~~Li~~~e~a~~~v~~Lg~lg~ 48 (821)
|..+.|+.-...+|+++.+|+..+..+++.++|.+.|.
T Consensus 12 ~~~~~~~~m~~~~mK~I~aIIr~~k~e~V~~aL~~~Gi 49 (119)
T 2cz4_A 12 GLVPRGSHMDLVPLKLVTIVAESLLEKRLVEEVKRLGA 49 (119)
T ss_dssp --------CCEEEEEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred ccCcchhhCCcCCcEEEEEEECHHHHHHHHHHHHhCCC
Confidence 45555655556789999999999999999999999986
No 39
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=28.52 E-value=1.2e+02 Score=23.68 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELV 137 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~ 137 (821)
.++++..++.++++-.++..+++.|+.+...|.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555544443
No 40
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=28.50 E-value=1e+02 Score=21.27 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRA 132 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~ 132 (821)
+++||+..+++-++-.++.++..+|++-
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5677777777777777777777777654
No 41
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=27.43 E-value=1.3e+02 Score=20.78 Aligned_cols=28 Identities=11% Similarity=0.122 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003422 112 LGDLEAELVEINANGDKLQRAHSELVEY 139 (821)
Q Consensus 112 l~~le~~l~~l~~~~~~L~~~~~eL~e~ 139 (821)
.+++++++.++.++...|..+..++.+.
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4567777888888887777777766553
No 42
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=27.00 E-value=1.2e+02 Score=20.79 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003422 104 NTDDLEVKLGDLEAELVEINANGDKLQRAH 133 (821)
Q Consensus 104 ~l~eLe~~l~~le~~l~~l~~~~~~L~~~~ 133 (821)
.+++||+.++++-.+-.++.++.++|++-+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 367888888888888888888888777644
No 43
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.91 E-value=1.7e+02 Score=25.54 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003422 102 DNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKL 141 (821)
Q Consensus 102 ~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~ 141 (821)
......|++..+.++.++..+.++.+.++++.++++...+
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666777777777777777777777776665433
No 44
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=26.79 E-value=90 Score=21.74 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003422 112 LGDLEAELVEINANGDKLQRAHSELVEY 139 (821)
Q Consensus 112 l~~le~~l~~l~~~~~~L~~~~~eL~e~ 139 (821)
.++++.++.++..+...|+.+..+|.+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4567778888888888887777777654
No 45
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.45 E-value=3.6e+02 Score=24.02 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003422 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQK 145 (821)
Q Consensus 104 ~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~ 145 (821)
.+.++.+..+++..++..+.++++.++..+.++.+-+..++.
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~ 43 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357788888888888899999999888888888777666554
No 46
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=25.39 E-value=43 Score=28.81 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003422 107 DLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (821)
Q Consensus 107 eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~ 139 (821)
-.+.++.++..++.++..+..++..+++.+.+.
T Consensus 53 ~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~ 85 (93)
T 3s4r_A 53 LYEEEMRELRRQVDQLTNDKARVEVERDNLAED 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777765543
No 47
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=25.25 E-value=93 Score=21.41 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Q 003422 114 DLEAELVEINANGDKLQRAHSELVE 138 (821)
Q Consensus 114 ~le~~l~~l~~~~~~L~~~~~eL~e 138 (821)
++++++.++..+...|+.+..+|.+
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444445555555555555554443
No 48
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.83 E-value=1e+02 Score=25.20 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q 003422 112 LGDLEAELVEINANGDKLQRAH 133 (821)
Q Consensus 112 l~~le~~l~~l~~~~~~L~~~~ 133 (821)
++++++++.+..+.+.+|++++
T Consensus 42 I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 49
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=24.54 E-value=1.8e+02 Score=22.74 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003422 106 DDLEVKLGDLEAELVEINANGDKLQRAHSEL 136 (821)
Q Consensus 106 ~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL 136 (821)
++|+.+++.++.+-.++..+++.|+.+...|
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444433
No 50
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.47 E-value=1.3e+02 Score=25.32 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRA 132 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~ 132 (821)
+.++..++.++++++....++...|...
T Consensus 58 ~~~l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 58 TQKVLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666666666666666665443
No 51
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=24.46 E-value=1.3e+02 Score=20.70 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRA 132 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~ 132 (821)
+++||+.++++-.+=.++.++.++|++-
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 4667777777766667777777666653
No 52
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=24.46 E-value=1.6e+02 Score=24.25 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 003422 71 KCAEMARKLRFFK 83 (821)
Q Consensus 71 rceE~e~kl~fl~ 83 (821)
|++++|-++.|.+
T Consensus 15 Ri~~LE~klAfqE 27 (78)
T 3efg_A 15 RLVELETRLSFQE 27 (78)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 53
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.11 E-value=80 Score=27.24 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003422 102 DNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (821)
Q Consensus 102 ~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~ 139 (821)
......+++..+.++.++..+.++.+.++++.++++..
T Consensus 64 ~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666667777777777777777766666553
No 54
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.96 E-value=1.6e+02 Score=23.20 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003422 106 DDLEVKLGDLEAELVEINANGDKLQRAHSEL 136 (821)
Q Consensus 106 ~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL 136 (821)
++++.++++++++-.++..+++.|+.+...|
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 55
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=23.90 E-value=2.4e+02 Score=24.32 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Q 003422 114 DLEAELVEINANGDKLQRAHSEL 136 (821)
Q Consensus 114 ~le~~l~~l~~~~~~L~~~~~eL 136 (821)
+++.++.++.+++..|+....++
T Consensus 51 eL~~EI~~L~~eI~~LE~iqs~a 73 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQLEKMQNNS 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444443333
No 56
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=23.57 E-value=1.4e+02 Score=20.84 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003422 112 LGDLEAELVEINANGDKLQRAHSELVEY 139 (821)
Q Consensus 112 l~~le~~l~~l~~~~~~L~~~~~eL~e~ 139 (821)
.++++.++.++..+...|+.+..+|++.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3567888888888888888887777664
No 57
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=22.99 E-value=3.3e+02 Score=22.68 Aligned_cols=26 Identities=31% Similarity=0.183 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003422 114 DLEAELVEINANGDKLQRAHSELVEY 139 (821)
Q Consensus 114 ~le~~l~~l~~~~~~L~~~~~eL~e~ 139 (821)
+++.++.+..+.++-|+-++.+|++.
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKek 35 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEK 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 58
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=22.29 E-value=3.7e+02 Score=22.95 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003422 101 ADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKL 141 (821)
Q Consensus 101 ~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~ 141 (821)
...+..+|-..+.+..+-+..+..+...+.++.+.+++..-
T Consensus 42 ~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl 82 (93)
T 3t98_B 42 SHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYL 82 (93)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556888888888888889999999999888888877543
No 59
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.21 E-value=1.1e+02 Score=24.72 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELV 137 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~ 137 (821)
+.+||..+.+++....++..+.+.|+..+..|.
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444444455555555444443
No 60
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=22.07 E-value=60 Score=29.82 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=29.4
Q ss_pred CccccccCceEEEEeccCcHHHHHHHHhccCc
Q 003422 17 DLFRSEPMQLVQIIIPIESAHLTVSYLGELGL 48 (821)
Q Consensus 17 s~fRSe~M~~~~Li~~~e~a~~~v~~Lg~lg~ 48 (821)
..|=+.+|+++..|++.+..+++.++|.+.|.
T Consensus 6 ~~~~~~~MK~I~AIIr~~k~~~V~~AL~~~G~ 37 (135)
T 2o66_A 6 DYIPDSKFYKVEAIVRPWRIQQVSSALLKIGI 37 (135)
T ss_dssp SCSSCCSEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CcCCCCCeEEEEEEECHHHHHHHHHHHHHCCC
Confidence 46778899999999999999999999999985
No 61
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=22.05 E-value=4.7e+02 Score=24.08 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHH-------HcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003422 70 KKCAEMARKLRFFKEQML-------KAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLV 142 (821)
Q Consensus 70 ~rceE~e~kl~fl~~~l~-------k~~i~~~~~~~~~~~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~v 142 (821)
.+++.+..+++-|.+.++ +.++. |....++.+...++...+++..+.+.++..+-.++..-| ..
T Consensus 21 ~~sd~LvtkVDDLQD~VE~LRkDV~~Rgvr-------P~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE--~E 91 (141)
T 3okq_A 21 DLSDTLLSKVDDLQDVIEIMRKDVAERRSQ-------PAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWE--AE 91 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHH--HH
Confidence 344555555554444444 44544 344557777777888888888888888777777766633 33
Q ss_pred HHHH---hhhhhhh
Q 003422 143 LQKA---GEFFSSA 153 (821)
Q Consensus 143 L~~~---~~~l~~~ 153 (821)
|++. ++||+..
T Consensus 92 L~~VceEQqfl~~Q 105 (141)
T 3okq_A 92 LDKVCEEQQFLTLQ 105 (141)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 3332 4455543
No 62
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.95 E-value=2.5e+02 Score=23.15 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003422 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (821)
Q Consensus 106 ~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~ 139 (821)
++||..+.-.+.-+.++++-+.+-.+.++.+...
T Consensus 17 ~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~q 50 (78)
T 3efg_A 17 VELETRLSFQEQALTELSEALADARLTGARNAEL 50 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444334444444444444444444444443
No 63
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.70 E-value=3.5e+02 Score=24.57 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003422 277 FDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGD 314 (821)
Q Consensus 277 ~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~ 314 (821)
...-.+.+.+++++.++.++++++..++.+.+++.+..
T Consensus 87 ee~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 87 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777777777777666666655554443
No 64
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=21.43 E-value=3.6e+02 Score=22.49 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003422 281 AQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHT 332 (821)
Q Consensus 281 ~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~~ 332 (821)
...++.++..|.+++.++.+++.++...+.++.. +-..+..+..|.+.|..
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~-LlnvK~~Le~EIatYRk 77 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQE-LLDIKLALDMEIHAYRK 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHH
Confidence 3345566666777777777666666665555433 33344556677676654
No 65
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=21.39 E-value=1.8e+02 Score=29.28 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003422 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKL 141 (821)
Q Consensus 104 ~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~ 141 (821)
-++++|+.++++++++.++.+..+..++++..+++...
T Consensus 7 Rvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~ 44 (233)
T 2yko_A 7 RCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQ 44 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999998888888877777766433
No 66
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.37 E-value=3.3e+02 Score=25.36 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003422 277 FDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIG 313 (821)
Q Consensus 277 ~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~ 313 (821)
...-.+.+.+++++.++.++++++..++.+.+++++.
T Consensus 87 eeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~ 123 (151)
T 1yke_B 87 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVD 123 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777766665555555544443
No 67
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=21.19 E-value=1.7e+02 Score=20.15 Aligned_cols=29 Identities=14% Similarity=0.176 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAH 133 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~ 133 (821)
+++||+.++++-.+=.++.++..+|++-+
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 46677777666666666666666666543
No 68
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.13 E-value=1.5e+02 Score=26.38 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=9.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH
Q 003422 119 LVEINANGDKLQRAHSELVEYK 140 (821)
Q Consensus 119 l~~l~~~~~~L~~~~~eL~e~~ 140 (821)
+.++..++..|..++++..+..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~ 94 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEV 94 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333
No 69
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.80 E-value=2.3e+02 Score=22.19 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003422 111 KLGDLEAELVEINANGDKLQRAHSELVEYKLVL 143 (821)
Q Consensus 111 ~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL 143 (821)
.++++++++..+.+....|.+++..|.+...-|
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777778888888888888777776665443
No 70
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=20.78 E-value=3.6e+02 Score=22.30 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003422 281 AQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTL 333 (821)
Q Consensus 281 ~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~~l 333 (821)
...++.++..+.+++.++.+++.++...+.++.. +-..+..+..|.+.|..+
T Consensus 25 ~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~-LlnvK~~Ld~EIatYRkL 76 (84)
T 1gk4_A 25 AVEAANYQDTIGRLQDEIQNMKEEMARHLREYQD-LLNVKMALDIEIATYRKL 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHH
Confidence 3345666666777777777666666665555543 334455567777777643
No 71
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.74 E-value=1.6e+02 Score=33.08 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003422 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQK 145 (821)
Q Consensus 106 ~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~ 145 (821)
++|++.+..++.+|.++.+++..|++.++++....+.|+.
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777778888888888888888877777665555443
No 72
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=20.49 E-value=3.7e+02 Score=22.39 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 003422 105 TDDLEVKLGDLEA 117 (821)
Q Consensus 105 l~eLe~~l~~le~ 117 (821)
+++||+.+++.-+
T Consensus 8 leqLE~KIq~avd 20 (81)
T 2jee_A 8 FEKLEAKVQQAID 20 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 73
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=20.37 E-value=2.3e+02 Score=26.03 Aligned_cols=6 Identities=0% Similarity=-0.258 Sum_probs=3.0
Q ss_pred EEEEec
Q 003422 27 VQIIIP 32 (821)
Q Consensus 27 ~~Li~~ 32 (821)
|+|.++
T Consensus 19 Y~i~g~ 24 (138)
T 3hnw_A 19 IKLGGY 24 (138)
T ss_dssp EEECSC
T ss_pred EEecCC
Confidence 455554
No 74
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.06 E-value=2.4e+02 Score=22.09 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003422 111 KLGDLEAELVEINANGDKLQRAHSELVEYKLVL 143 (821)
Q Consensus 111 ~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL 143 (821)
..++++.++.++.++.+.|+.++..|+.....|
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777655443
No 75
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.04 E-value=1.8e+02 Score=24.45 Aligned_cols=30 Identities=10% Similarity=0.213 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003422 109 EVKLGDLEAELVEINANGDKLQRAHSELVE 138 (821)
Q Consensus 109 e~~l~~le~~l~~l~~~~~~L~~~~~eL~e 138 (821)
+++++...++|.++.+.+++.++++.+|+.
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455555666666666666666666665543
No 76
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=20.01 E-value=61 Score=28.55 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=24.2
Q ss_pred cCceEEEEeccCcHHHHHHHHhccCc
Q 003422 23 PMQLVQIIIPIESAHLTVSYLGELGL 48 (821)
Q Consensus 23 ~M~~~~Li~~~e~a~~~v~~Lg~lg~ 48 (821)
+|+++..|++.+..+++.++|.+.|.
T Consensus 2 ~Mk~I~aIIr~~~~~~v~~aL~~~G~ 27 (114)
T 3bzq_A 2 HMKLITAIVKPFTLDDVKTSLEDAGV 27 (114)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CcEEEEEEECHHHHHHHHHHHHHCCC
Confidence 59999999999999999999999985
Done!