Query 003422
Match_columns 821
No_of_seqs 204 out of 960
Neff 7.3
Searched_HMMs 13730
Date Tue Mar 26 00:39:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003422.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003422hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxkc_ a.2.5.1 (C:) Prefoldin 70.0 30 0.0022 29.2 14.7 42 104-145 2-43 (133)
2 d1u7la_ e.57.1.1 (A:) Vacuolar 64.5 77 0.0056 31.9 24.9 72 191-273 184-256 (388)
3 d1imta1 g.3.10.1 (A:1-36) Inte 46.6 1.2 8.6E-05 28.9 -1.1 18 8-25 14-31 (36)
4 d2cz4a1 d.58.5.1 (A:1-100) Hyp 29.3 14 0.001 30.1 2.7 27 22-48 4-30 (100)
5 d1ykhb1 a.252.1.1 (B:2-130) RN 22.5 1.4E+02 0.01 25.0 8.2 38 278-315 87-124 (129)
6 d1ykhb1 a.252.1.1 (B:2-130) RN 22.2 57 0.0041 27.6 5.5 30 105-134 93-122 (129)
7 d1qvra2 c.37.1.20 (A:149-535) 20.0 1.3E+02 0.0094 30.0 8.8 46 103-148 282-327 (387)
8 d2p90a1 c.56.8.1 (A:6-274) Hyp 14.9 79 0.0057 29.8 5.3 39 102-140 223-261 (269)
9 d1q08a_ a.6.1.3 (A:) Transcrip 14.6 1.3E+02 0.0095 23.4 5.7 18 119-136 48-65 (94)
10 d1vcsa1 a.47.2.1 (A:8-96) Vesi 14.0 1.5E+02 0.011 22.9 5.9 29 278-306 27-55 (89)
No 1
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=69.98 E-value=30 Score=29.19 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003422 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQK 145 (821)
Q Consensus 104 ~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~ 145 (821)
.+++|..+++.+++++..+.++++.++....++..-++.|+.
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~ 43 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888999999999999888888888777666553
No 2
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=64.50 E-value=77 Score=31.88 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=42.0
Q ss_pred cceEEEEEEEEcCCchHHHHHHHHHhhcCcEEEEeeccCCccccCCCCcccceEEE-EEEEeChhhHHHHHHhhhccCcE
Q 003422 191 QIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVF-VVFYSGERAKNKILKICDAFGAN 269 (821)
Q Consensus 191 ~~~~~~~~G~I~~~~~~~f~~~l~r~~~gn~~~~~~~i~~~~~~~~~~~~~~k~v~-vi~~~~~~~~~~v~~i~~~~~~~ 269 (821)
+.++..++=.||+.....|.+. |+..-..+.-+.+. .+ . ++.+...| |.+| +...++....|++.+|.
T Consensus 184 SEyLtTllVvVPk~~~~dwl~~-YEtL~~~VVPrSs~----~i---~-~D~e~~L~~VtlF--kk~~~eF~~~aRE~kf~ 252 (388)
T d1u7la_ 184 SEHLTTVLVAVPKSLKSDFEKS-YETLSKNVVPASAS----VI---A-EDAEYVLFNVHLF--KKNVQEFTTAAREKKFI 252 (388)
T ss_dssp CSSEEEEEEEEEGGGHHHHHHH-GGGSSTTBCTTCCE----EE---E-ECSSEEEEEEEEE--GGGHHHHHHHHHHTTCE
T ss_pred cccceEEEEEeecccHHHHHHH-HhhhcCcccCChhh----hc---e-ecCCeeEEEEEEE--hhhHHHHHHHHHHcCcc
Confidence 4577888889999999999876 44443332111110 00 0 11123333 3444 45678888888888877
Q ss_pred EeeC
Q 003422 270 RYPF 273 (821)
Q Consensus 270 ~~~~ 273 (821)
.=++
T Consensus 253 vRdF 256 (388)
T d1u7la_ 253 PREF 256 (388)
T ss_dssp EECC
T ss_pred cccc
Confidence 6555
No 3
>d1imta1 g.3.10.1 (A:1-36) Intestinal toxin 1 {Black mamba (Dendroaspis polylepis polylepis) [TaxId: 8620]}
Probab=46.56 E-value=1.2 Score=28.94 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=15.6
Q ss_pred CCCCCCCCCCccccccCc
Q 003422 8 GGGGCCPPMDLFRSEPMQ 25 (821)
Q Consensus 8 ~~~~~~~~~s~fRSe~M~ 25 (821)
|||-||..+=+.||-+|+
T Consensus 14 g~g~CCAvSlW~r~lR~C 31 (36)
T d1imta1 14 GKGTCCAVSLWIKSVRVC 31 (36)
T ss_dssp CTTEEEEECSSCTTCEEE
T ss_pred CCccEeeehhhhhhceee
Confidence 567899999999998886
No 4
>d2cz4a1 d.58.5.1 (A:1-100) Hypothetical protein TTHA0516 {Thermus thermophilus [TaxId: 274]}
Probab=29.27 E-value=14 Score=30.09 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=25.1
Q ss_pred ccCceEEEEeccCcHHHHHHHHhccCc
Q 003422 22 EPMQLVQIIIPIESAHLTVSYLGELGL 48 (821)
Q Consensus 22 e~M~~~~Li~~~e~a~~~v~~Lg~lg~ 48 (821)
-+|+++.+++..+.++++.++|.+.|.
T Consensus 4 ~~mK~v~iIv~~~~~~~v~~~L~~~Gv 30 (100)
T d2cz4a1 4 VPLKLVTIVAESLLEKRLVEEVKRLGA 30 (100)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred cceEEEEEEECHHHHHHHHHHHHHCCC
Confidence 479999999999999999999999984
No 5
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.49 E-value=1.4e+02 Score=24.97 Aligned_cols=38 Identities=13% Similarity=0.277 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003422 278 DKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQ 315 (821)
Q Consensus 278 ~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~ 315 (821)
+.-.+.++++++++.+.++++++..++.+++++++...
T Consensus 87 e~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~ 124 (129)
T d1ykhb1 87 EEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888888887777666666666655443
No 6
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.22 E-value=57 Score=27.60 Aligned_cols=30 Identities=33% Similarity=0.357 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003422 105 TDDLEVKLGDLEAELVEINANGDKLQRAHS 134 (821)
Q Consensus 105 l~eLe~~l~~le~~l~~l~~~~~~L~~~~~ 134 (821)
+.+|+++..+.++++.+...+.++|.++++
T Consensus 93 i~~Le~E~~~~~~el~~~v~e~e~ll~~i~ 122 (129)
T d1ykhb1 93 IDMLQKKLVEVEDEKIEAIKKKEKLMRHVD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 7
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=20.05 E-value=1.3e+02 Score=30.04 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 003422 103 NNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGE 148 (821)
Q Consensus 103 ~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~~vL~~~~~ 148 (821)
..+++++.+++.+++++.++.++.++.+...+++.+.+.-++.++.
T Consensus 282 ~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~ 327 (387)
T d1qvra2 282 ERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRR 327 (387)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777766666666666666666666665555554443
No 8
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=14.87 E-value=79 Score=29.83 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003422 102 DNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYK 140 (821)
Q Consensus 102 ~~~l~eLe~~l~~le~~l~~l~~~~~~L~~~~~eL~e~~ 140 (821)
+.+.++|+++.++++++++++.++.+++.+-..+|++..
T Consensus 223 ~id~~~L~e~Ae~~e~~i~~l~e~~~e~~~~v~~LE~~y 261 (269)
T d2p90a1 223 NLPLLALERDAEKVHRQLMEQTEESSEIQRVVGALEQQY 261 (269)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhH
Confidence 445678888888888888888777777766666665543
No 9
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=14.57 E-value=1.3e+02 Score=23.44 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=6.6
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 003422 119 LVEINANGDKLQRAHSEL 136 (821)
Q Consensus 119 l~~l~~~~~~L~~~~~eL 136 (821)
+.++.+++.+|++-+++|
T Consensus 48 l~~i~~kI~~L~~l~~~L 65 (94)
T d1q08a_ 48 LQEVEARIAELQSMQRSL 65 (94)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 10
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.99 E-value=1.5e+02 Score=22.93 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003422 278 DKQAQAISEVSGRLSELKTTLDAGLLHRG 306 (821)
Q Consensus 278 ~~~~~~l~~l~~~i~~~~~~l~~~~~~~~ 306 (821)
+.....+.+++..+++.+..+++..-+.+
T Consensus 27 eerk~~l~~ie~~leEA~ell~qMelEvr 55 (89)
T d1vcsa1 27 DEKKQMVANVEKQLEEARELLEQMDLEVR 55 (89)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 36778889999999999998887655543
Done!