BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003423
(821 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 123/292 (42%), Gaps = 53/292 (18%)
Query: 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS----------NSSII 170
N L+Q+L S V+ V F +++A D ++++W+ + +SS+
Sbjct: 169 NGQLLQTLTGHSSSVWGVAF---SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR 225
Query: 171 LEVHSPERCLLYS------MKLWGDNLEALRIASGTIYN-EIIVWKVDWEHVAPLLNSPE 223
SP+ + S +KLW N + L+ +G + + ++ D + +A
Sbjct: 226 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIA------- 278
Query: 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283
S+SD K KL ++ L L GH S++ + +S G + S SDD++ ++W
Sbjct: 279 ------SASDDKTVKLWNRNGQL--LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Query: 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLK 341
++ + L GH++ VW + I +A +D T ++W +G+ L+
Sbjct: 331 NRNGQHLQ-----------TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 379
Query: 342 MIKEHIG--RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEA 391
+ H RG+ + + +A D +K+ L +L H +
Sbjct: 380 TLTGHSSSVRGV---AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 428
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 113/268 (42%), Gaps = 47/268 (17%)
Query: 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS----------NSSIILEVH 174
+Q+L S V+ V F +++A D ++++W+ + +SS+
Sbjct: 337 LQTLTGHSSSVWGVAF---SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF 393
Query: 175 SPERCLLYS------MKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228
SP+ + S +KLW N + L+ +G + VW V + SP+ +
Sbjct: 394 SPDGQTIASASDDKTVKLWNRNGQLLQTLTG---HSSSVWGVAF--------SPD-DQTI 441
Query: 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288
S+SD K KL ++ L L GH S+ + +S G + S SDD++ ++W +
Sbjct: 442 ASASDDKTVKLWNRNGQL--LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 499
Query: 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEH 346
+ L GH++ V + I +A +D T ++W +G+ L+ + H
Sbjct: 500 LLQ-----------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 548
Query: 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKV 374
+W + + +A D +K+
Sbjct: 549 -SSSVWGVAFSPDGQTIASASSDKTVKL 575
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 29/230 (12%)
Query: 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280
SP+G S+SD K KL ++ L L GH S++ + +S G + S SDD++
Sbjct: 25 SPDG-QTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 81
Query: 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGK 338
++W + + L GH++ V + I +A +D T ++W +G+
Sbjct: 82 KLWNRNGQLLQ-----------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 130
Query: 339 QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESH---------- 388
L+ + H +W + + +A D +K+ L +L H
Sbjct: 131 LLQTLTGH-SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 189
Query: 389 PEAKEFNGRTEIFSIKIPNFSEQIRLT-DSKSEYVRCLHLTSEDTLYIAT 437
P+ + ++ ++K+ N + Q+ T S VR + S D IA+
Sbjct: 190 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF-SPDGQTIAS 238
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310
RL H S+ + +S G + S SDD++ ++W + + L GH++
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-----------TLTGHSSS 59
Query: 311 VWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG--RGIWRCLYDSLSSLLVTA 366
VW + I +A +D T ++W +G+ L+ + H RG+ + + +A
Sbjct: 60 VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV---AFSPDGQTIASA 116
Query: 367 GFDSAIKVHQFQAFLPGSLESH----------PEAKEFNGRTEIFSIKIPNFSEQI 412
D +K+ L +L H P+ + ++ ++K+ N + Q+
Sbjct: 117 SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL 172
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 33/180 (18%)
Query: 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS----------NSSII 170
N L+Q+L S V+ V F ++++A D ++++W+ + +SS+
Sbjct: 415 NGQLLQTLTGHSSSVWGVAF---SPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR 471
Query: 171 LEVHSPERCLLYS------MKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224
SP+ + S +KLW N + L+ +G + V + SP+G
Sbjct: 472 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS-----------VRGVAFSPDG 520
Query: 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284
S+SD K KL ++ L L GH S++ + +S G + S S D++ ++W
Sbjct: 521 -QTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 36/247 (14%)
Query: 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSM 184
S P ++ VCF + LA G D IR+WDI N I++ + E+ + YS+
Sbjct: 116 TSSSPSSDLYIRSVCF---SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI-YSL 171
Query: 185 KLW--GDNLEALRIASGTIYNEIIVWKVDW----------EHVAPLLNSP-EGNHAHGSS 231
+ GD ++ SG+ + +W + + V + SP +G + S
Sbjct: 172 DYFPSGD-----KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS 226
Query: 232 SDFKCFKLQDQQHTAVNLFRL-------VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284
D + ++ D + T + RL GH+ S++ + ++ G +VS S DRS ++W
Sbjct: 227 LD-RAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284
Query: 285 VRAEYWKDSDSIEEVGS-SVLY-GHNARVWDCCLT--DSFIITAGEDCTCRVWG-SDGKQ 339
++ K G+ V Y GH V T D +I++ +D W G
Sbjct: 285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 344
Query: 340 LKMIKEH 346
L M++ H
Sbjct: 345 LLMLQGH 351
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 30/200 (15%)
Query: 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197
VC +K N LA GC + + +V+ +S+ S++ + + +NL
Sbjct: 67 VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDS-----AANKDPENLNTSSSP 120
Query: 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257
S +Y + + SP+G + D + ++ D ++ + + L GHE
Sbjct: 121 SSDLYIRSVCF------------SPDGKFLATGAED-RLIRIWDIENRKIVMI-LQGHEQ 166
Query: 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317
I+ +++ G KLVS S DR+ RIW++R + SIE+ ++V
Sbjct: 167 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA---------VSPG 217
Query: 318 DSFIITAGE-DCTCRVWGSD 336
D I AG D RVW S+
Sbjct: 218 DGKYIAAGSLDRAVRVWDSE 237
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 68/128 (53%), Gaps = 12/128 (9%)
Query: 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGH 307
+F L GH ++ +++S G L S S D+ +IW ++ + S ++G S V +
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 308 NARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366
++ + +++A +D T ++W S GK LK +K H ++ C ++ S+L+V+
Sbjct: 79 DSNL---------LVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSG 128
Query: 367 GFDSAIKV 374
FD ++++
Sbjct: 129 SFDESVRI 136
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 18/128 (14%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNA 309
+ GH+ I + WSS + LVS SDD++ +IW+V + G L GH+
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS------------GKCLKTLKGHSN 111
Query: 310 RVWDCCLT--DSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366
V+ C + I++ D + R+W G LK + H + ++ SL+V++
Sbjct: 112 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAH-SDPVSAVHFNRDGSLIVSS 170
Query: 367 GFDSAIKV 374
+D ++
Sbjct: 171 SYDGLCRI 178
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289
S+SD K K+ D + L L GH +F ++ + +VS S D S RIW+V+
Sbjct: 85 SASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM 143
Query: 290 -WKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347
K + + S+V + + S I+++ D CR+W + G+ LK + +
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDG---------SLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378
+ + ++ A D+ +K+ +
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 68/128 (53%), Gaps = 12/128 (9%)
Query: 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGH 307
+F L GH ++ +++S G L S S D+ +IW ++ + S ++G S V +
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 308 NARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366
++ + +++A +D T ++W S GK LK +K H ++ C ++ S+L+V+
Sbjct: 79 DSNL---------LVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSG 128
Query: 367 GFDSAIKV 374
FD ++++
Sbjct: 129 SFDESVRI 136
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 18/128 (14%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNA 309
+ GH+ I + WSS + LVS SDD++ +IW+V + G L GH+
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS------------GKCLKTLKGHSN 111
Query: 310 RVWDCCLT--DSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366
V+ C + I++ D + R+W G LK + H + ++ SL+V++
Sbjct: 112 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAH-SDPVSAVHFNRDGSLIVSS 170
Query: 367 GFDSAIKV 374
+D ++
Sbjct: 171 SYDGLCRI 178
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289
S+SD K K+ D + L L GH +F ++ + +VS S D S RIW+V+
Sbjct: 85 SASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM 143
Query: 290 -WKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347
K + + S+V + + S I+++ D CR+W + G+ LK + +
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDG---------SLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378
+ + ++ A D+ +K+ +
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNDLKLWDYS 225
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHN 308
F L GH ++ +++S G L S S D+ +IW ++ + S ++G S V + +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 309 ARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367
+ + +++A +D T ++W S GK LK +K H ++ C ++ S+L+V+
Sbjct: 83 SNL---------LVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 132
Query: 368 FDSAIKV 374
FD ++++
Sbjct: 133 FDESVRI 139
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNA 309
+ GH+ I + WSS + LVS SDD++ +IW+V + G L GH+
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS------------GKCLKTLKGHSN 114
Query: 310 RVWDCCLT--DSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366
V+ C + I++ D + R+W GK LK + H + ++ SL+V++
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSS 173
Query: 367 GFDSAIKV 374
+D ++
Sbjct: 174 SYDGLCRI 181
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR-AE 288
S+SD K K+ D + L L GH +F ++ + +VS S D S RIW+V+ +
Sbjct: 88 SASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 146
Query: 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347
K + + S+V + + S I+++ D CR+W + G+ LK + +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDG---------SLIVSSSYDGLCRIWDTASGQCLKTLIDDD 197
Query: 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377
+ + ++ A D+ +K+ +
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHN 308
F L GH ++ +++S G L S S D+ +IW ++ + S ++G S V + +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 309 ARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367
+ + +++A +D T ++W S GK LK +K H ++ C ++ S+L+V+
Sbjct: 83 SNL---------LVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 132
Query: 368 FDSAIKV 374
FD ++++
Sbjct: 133 FDESVRI 139
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNA 309
+ GH+ I + WSS + LVS SDD++ +IW+V + G L GH+
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS------------GKCLKTLKGHSN 114
Query: 310 RVWDCCLT--DSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366
V+ C + I++ D + R+W GK LK + H + ++ SL+V++
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSS 173
Query: 367 GFDSAIKV 374
+D ++
Sbjct: 174 SYDGLCRI 181
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 12/151 (7%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR-AE 288
S+SD K K+ D + L L GH +F ++ + +VS S D S RIW+V+ +
Sbjct: 88 SASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 146
Query: 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347
K + + S+V + + S I+++ D CR+W + G+ LK + +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDG---------SLIVSSSYDGLCRIWDTASGQCLKTLIDDD 197
Query: 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378
+ + ++ A D+ +K+ +
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHN 308
F L GH ++ +++S G L S S D+ +IW ++ + S ++G S V + +
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 309 ARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367
+ + +++A +D T ++W S GK LK +K H ++ C ++ S+L+V+
Sbjct: 77 SNL---------LVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 126
Query: 368 FDSAIKV 374
FD ++++
Sbjct: 127 FDESVRI 133
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 24/161 (14%)
Query: 221 SPEGNHAHGSSSD--FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278
SP G SS+D K + D + + GH+ I + WSS + LVS SDD+
Sbjct: 32 SPNGEWLASSSADKLIKIWGAYDGKFEKT----ISGHKLGISDVAWSSDSNLLVSASDDK 87
Query: 279 SARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334
+ +IW+V + G L GH+ V+ C + I++ D + R+W
Sbjct: 88 TLKIWDVSS------------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 335 -SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374
GK LK + H + ++ SL+V++ +D ++
Sbjct: 136 VKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR-AE 288
S+SD K K+ D + L L GH +F ++ + +VS S D S RIW+V+ +
Sbjct: 82 SASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 140
Query: 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347
K + + S+V + + S I+++ D CR+W + G+ LK + +
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDG---------SLIVSSSYDGLCRIWDTASGQCLKTLIDDD 191
Query: 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377
+ + ++ A D+ +K+ +
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDY 221
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHN 308
F L GH ++ +++S G L S S D+ +IW ++ + S ++G S V + +
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 75
Query: 309 ARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367
+ + +++A +D T ++W S GK LK +K H ++ C ++ S+L+V+
Sbjct: 76 SNL---------LVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 125
Query: 368 FDSAIKV 374
FD ++++
Sbjct: 126 FDESVRI 132
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 24/161 (14%)
Query: 221 SPEGNHAHGSSSD--FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278
SP G SS+D K + D + + GH+ I + WSS + LVS SDD+
Sbjct: 31 SPNGEWLASSSADKLIKIWGAYDGKFEKT----ISGHKLGISDVAWSSDSNLLVSASDDK 86
Query: 279 SARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334
+ +IW+V + G L GH+ V+ C + I++ D + R+W
Sbjct: 87 TLKIWDVSS------------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Query: 335 -SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374
GK LK + H + ++ SL+V++ +D ++
Sbjct: 135 VKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRI 174
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 12/151 (7%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR-AE 288
S+SD K K+ D + L L GH +F ++ + +VS S D S RIW+V+ +
Sbjct: 81 SASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 139
Query: 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347
K + + S+V + + S I+++ D CR+W + G+ LK + +
Sbjct: 140 CLKTLPAHSDPVSAVHFNRDG---------SLIVSSSYDGLCRIWDTASGQCLKTLIDDD 190
Query: 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378
+ + ++ A D+ +K+ +
Sbjct: 191 NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 221
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHN 308
F L GH ++ +++S G L S S D+ +IW ++ + S ++G S V + +
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 72
Query: 309 ARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367
+ + +++A +D T ++W S GK LK +K H ++ C ++ S+L+V+
Sbjct: 73 SNL---------LVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 122
Query: 368 FDSAIKV 374
FD ++++
Sbjct: 123 FDESVRI 129
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 24/161 (14%)
Query: 221 SPEGNHAHGSSSD--FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278
SP G SS+D K + D + + GH+ I + WSS + LVS SDD+
Sbjct: 28 SPNGEWLASSSADKLIKIWGAYDGKFEKT----ISGHKLGISDVAWSSDSNLLVSASDDK 83
Query: 279 SARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334
+ +IW+V + G L GH+ V+ C + I++ D + R+W
Sbjct: 84 TLKIWDVSS------------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 335 -SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374
GK LK + H + ++ SL+V++ +D ++
Sbjct: 132 VKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRI 171
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 12/151 (7%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR-AE 288
S+SD K K+ D + L L GH +F ++ + +VS S D S RIW+V+ +
Sbjct: 78 SASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 136
Query: 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347
K + + S+V + + S I+++ D CR+W + G+ LK + +
Sbjct: 137 CLKTLPAHSDPVSAVHFNRDG---------SLIVSSSYDGLCRIWDTASGQCLKTLIDDD 187
Query: 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378
+ + ++ A D+ +K+ +
Sbjct: 188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 218
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHN 308
F L GH ++ +++S G L S S D+ +IW ++ + S ++G S V + +
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 98
Query: 309 ARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367
+ + +++A +D T ++W S GK LK +K H ++ C ++ S+L+V+
Sbjct: 99 S---------NLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 148
Query: 368 FDSAIKV 374
FD ++++
Sbjct: 149 FDESVRI 155
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNA 309
+ GH+ I + WSS + LVS SDD++ +IW+V + G L GH+
Sbjct: 83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS------------GKCLKTLKGHSN 130
Query: 310 RVWDCCLT--DSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366
V+ C + I++ D + R+W GK LK + H + ++ SL+V++
Sbjct: 131 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSS 189
Query: 367 GFDSAIKV 374
+D ++
Sbjct: 190 SYDGLCRI 197
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR-AE 288
S+SD K K+ D + L L GH +F ++ + +VS S D S RIW+V+ +
Sbjct: 104 SASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 162
Query: 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347
K + + S+V + + S I+++ D CR+W + G+ LK + +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDG---------SLIVSSSYDGLCRIWDTASGQCLKTLIDDD 213
Query: 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377
+ + ++ A D+ +K+ +
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWDY 243
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHN 308
F L GH ++ +++S G L S S D+ +IW ++ + S ++G S V + +
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 93
Query: 309 ARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367
+ + +++A +D T ++W S GK LK +K H ++ C ++ S+L+V+
Sbjct: 94 SNL---------LVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 143
Query: 368 FDSAIKV 374
FD ++++
Sbjct: 144 FDESVRI 150
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNA 309
+ GH+ I + WSS + LVS SDD++ +IW+V + G L GH+
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS------------GKCLKTLKGHSN 125
Query: 310 RVWDCCLT--DSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366
V+ C + I++ D + R+W GK LK + H + ++ SL+V++
Sbjct: 126 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSS 184
Query: 367 GFDSAIKV 374
+D ++
Sbjct: 185 SYDGLCRI 192
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR-AE 288
S+SD K K+ D + L L GH +F ++ + +VS S D S RIW+V+ +
Sbjct: 99 SASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 157
Query: 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347
K + + S+V + + S I+++ D CR+W + G+ LK + +
Sbjct: 158 CLKTLPAHSDPVSAVHFNRDG---------SLIVSSSYDGLCRIWDTASGQCLKTLIDDD 208
Query: 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377
+ + ++ A D+ +K+ +
Sbjct: 209 NPPVSFVKFSPNGKYILAATLDNTLKLWDY 238
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHN 308
F L GH ++ +++S G L S S D+ +IW ++ + S ++G S V + +
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 77
Query: 309 ARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367
+ + +++A +D T ++W S GK LK +K H ++ C ++ S+L+V+
Sbjct: 78 SNL---------LVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 127
Query: 368 FDSAIKV 374
FD ++++
Sbjct: 128 FDESVRI 134
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNA 309
+ GH+ I + WSS + LVS SDD++ +IW+V + G L GH+
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS------------GKCLKTLKGHSN 109
Query: 310 RVWDCCLT--DSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366
V+ C + I++ D + R+W GK LK + H + ++ SL+V++
Sbjct: 110 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSS 168
Query: 367 GFDSAIKV 374
+D ++
Sbjct: 169 SYDGLCRI 176
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR-AE 288
S+SD K K+ D + L L GH +F ++ + +VS S D S RIW+V+ +
Sbjct: 83 SASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 141
Query: 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347
K + + S+V + + S I+++ D CR+W + G+ LK + +
Sbjct: 142 CLKTLPAHSDPVSAVHFNRDG---------SLIVSSSYDGLCRIWDTASGQCLKTLIDDD 192
Query: 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377
+ + ++ A D+ +K+ +
Sbjct: 193 NPPVSFVKFSPNGKYILAATLDNTLKLWDY 222
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHN 308
F L GH ++ +++S G L S S D+ +IW ++ + S ++G S V + +
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 309 ARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367
+ + +++A +D T ++W S GK LK +K H ++ C ++ S+L+V+
Sbjct: 77 SNL---------LVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 126
Query: 368 FDSAIKV 374
FD ++++
Sbjct: 127 FDESVRI 133
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNA 309
+ GH+ I + WSS + LVS SDD++ +IW+V + G L GH+
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS------------GKCLKTLKGHSN 108
Query: 310 RVWDCCLT--DSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366
V+ C + I++ D + R+W GK LK + H + ++ SL+V++
Sbjct: 109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSS 167
Query: 367 GFDSAIKV 374
+D ++
Sbjct: 168 SYDGLCRI 175
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR-AE 288
S+SD K K+ D + L L GH +F ++ + +VS S D S RIW+V+ +
Sbjct: 82 SASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 140
Query: 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347
K + + S+V + + S I+++ D CR+W + G+ LK + +
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDG---------SLIVSSSYDGLCRIWDTASGQCLKTLIDDD 191
Query: 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377
+ + ++ A D+ +K+ +
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDY 221
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHN 308
F L GH ++ +++S G L S S D+ +IW ++ + S ++G S V + +
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 81
Query: 309 ARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367
+ + +++A +D T ++W S GK LK +K H ++ C ++ S+L+V+
Sbjct: 82 SNL---------LVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 131
Query: 368 FDSAIKV 374
FD ++++
Sbjct: 132 FDESVRI 138
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNA 309
+ GH+ I + WSS + LVS SDD++ +IW+V + G L GH+
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS------------GKCLKTLKGHSN 113
Query: 310 RVWDCCLT--DSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366
V+ C + I++ D + R+W GK LK + H + ++ SL+V++
Sbjct: 114 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSS 172
Query: 367 GFDSAIKV 374
+D ++
Sbjct: 173 SYDGLCRI 180
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 12/151 (7%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR-AE 288
S+SD K K+ D + L L GH +F ++ + +VS S D S RIW+V+ +
Sbjct: 87 SASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 145
Query: 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347
K + + S+V + + S I+++ D CR+W + G+ LK + +
Sbjct: 146 CLKTLPAHSDPVSAVHFNRDG---------SLIVSSSYDGLCRIWDTASGQCLKTLIDDD 196
Query: 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378
+ + ++ A D+ +K+ +
Sbjct: 197 NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 227
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHN 308
F L GH ++ +++S G L S S D+ +IW ++ + S ++G S V + +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 309 ARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367
+ + +++A +D T ++W S GK LK +K H ++ C ++ S+L+V+
Sbjct: 83 SNL---------LVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 132
Query: 368 FDSAIKV 374
FD ++++
Sbjct: 133 FDESVRI 139
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNA 309
+ GH+ I + WSS + LVS SDD++ +IW+V + G L GH+
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS------------GKCLKTLKGHSN 114
Query: 310 RVWDCCLT--DSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366
V+ C + I++ D + R+W GK LK + H + ++ SL+V++
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSS 173
Query: 367 GFDSAIKV 374
+D ++
Sbjct: 174 SYDGLCRI 181
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 12/151 (7%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR-AE 288
S+SD K K+ D + L L GH +F ++ + +VS S D S RIW+V+ +
Sbjct: 88 SASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 146
Query: 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347
K + + S+V + + S I+++ D CR+W + G+ LK + +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDG---------SLIVSSSYDGLCRIWDTASGQCLKTLIDDD 197
Query: 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378
+ + ++ A D+ +K+ +
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHN 308
F L GH ++ +++S G L S S D+ +IW ++ + S ++G S V + +
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 100
Query: 309 ARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367
+ + +++A +D T ++W S GK LK +K H ++ C ++ S+L+V+
Sbjct: 101 S---------NLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 150
Query: 368 FDSAIKV 374
FD ++++
Sbjct: 151 FDESVRI 157
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNA 309
+ GH+ I + WSS + LVS SDD++ +IW+V + G L GH+
Sbjct: 85 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS------------GKCLKTLKGHSN 132
Query: 310 RVWDCCLT--DSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366
V+ C + I++ D + R+W GK LK + H + ++ SL+V++
Sbjct: 133 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSS 191
Query: 367 GFDSAIKV 374
+D ++
Sbjct: 192 SYDGLCRI 199
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR-AE 288
S+SD K K+ D + L L GH +F ++ + +VS S D S RIW+V+ +
Sbjct: 106 SASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 164
Query: 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347
K + + S+V + + S I+++ D CR+W + G+ LK + +
Sbjct: 165 CLKTLPAHSDPVSAVHFNRDG---------SLIVSSSYDGLCRIWDTASGQCLKTLIDDD 215
Query: 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377
+ + ++ A D+ +K+ +
Sbjct: 216 NPPVSFVKFSPNGKYILAATLDNTLKLWDY 245
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHN 308
F L GH ++ +++S G L S S D+ +IW ++ + S ++G S V + +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 309 ARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367
+ + +++A +D T ++W S GK LK +K H ++ C ++ S+L+V+
Sbjct: 80 SNL---------LVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 129
Query: 368 FDSAIKV 374
FD ++++
Sbjct: 130 FDESVRI 136
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNA 309
+ GH+ I + WSS + LVS SDD++ +IW+V + G L GH+
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS------------GKCLKTLKGHSN 111
Query: 310 RVWDCCLT--DSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366
V+ C + I++ D + R+W GK LK + H + ++ SL+V++
Sbjct: 112 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSS 170
Query: 367 GFDSAIKV 374
+D ++
Sbjct: 171 SYDGLCRI 178
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR-AE 288
S+SD K K+ D + L L GH +F ++ + +VS S D S RIW+V+ +
Sbjct: 85 SASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Query: 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347
K + + S+V + + S I+++ D CR+W + G+ LK + +
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDG---------SLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377
+ + ++ A D+ +K+ +
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHN 308
F L GH ++ +++S G L S S D+ +IW ++ + S ++G S V + +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 309 ARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367
+ + +++A +D T ++W S GK LK +K H ++ C ++ S+L+V+
Sbjct: 80 SNL---------LVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 129
Query: 368 FDSAIKV 374
FD ++++
Sbjct: 130 FDESVRI 136
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNA 309
+ GH+ I + WSS + LVS SDD++ +IW+V + G L GH+
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS------------GKCLKTLKGHSN 111
Query: 310 RVWDCCLT--DSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366
V+ C + I++ D + R+W GK LK + H + ++ SL+V++
Sbjct: 112 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSS 170
Query: 367 GFDSAIKV 374
+D ++
Sbjct: 171 SYDGLCRI 178
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR-AE 288
S+SD K K+ D + L L GH +F ++ + +VS S D S RIW+V+ +
Sbjct: 85 SASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Query: 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347
K + + S+V + + S I+++ D CR+W + G+ LK + +
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDG---------SLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377
+ + ++ A D+ +K+ +
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHN 308
F L GH ++ +++S G L + S D+ +IW ++ + S ++G S V + +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 309 ARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367
+ + +++A +D T ++W S GK LK +K H ++ C ++ S+L+V+
Sbjct: 80 SNL---------LVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS 129
Query: 368 FDSAIKV 374
FD ++++
Sbjct: 130 FDESVRI 136
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 24/167 (14%)
Query: 215 VAPLLNSPEGNHAHGSSSD--FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV 272
V+ + SP G SS+D K + D + + GH+ I + WSS + LV
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKT----ISGHKLGISDVAWSSDSNLLV 84
Query: 273 SVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCLT--DSFIITAGEDC 328
S SDD++ +IW+V + G L GH+ V+ C + I++ D
Sbjct: 85 SASDDKTLKIWDVSS------------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 329 TCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374
+ R+W GK LK + H + ++ SL+V++ +D ++
Sbjct: 133 SVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR-AE 288
S+SD K K+ D + L L GH +F ++ + +VS S D S RIW+V+ +
Sbjct: 85 SASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Query: 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347
K + + S+V + + S I+++ D CR+W + G+ LK + +
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDG---------SLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377
+ + ++ A D+ +K+ +
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 101/269 (37%), Gaps = 62/269 (23%)
Query: 150 LAIGCSDNSIRVWDISNS--SIILEVH-SPERCLLYSMKLWGDNLEALR---IASGTIYN 203
L G +D ++RVWDI + + E H S RCL D +E I +G+ N
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL--------DIVEYKNIKYIVTGSRDN 227
Query: 204 EIIVWKVDWEHVAP----------LLNSPEGN-----------------HAHG----SSS 232
+ VWK+ E P + ++PE N HG S S
Sbjct: 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGS 287
Query: 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292
+ D L+ L GH I+ + + +S S D + RIW++
Sbjct: 288 YDNTLIVWDVAQXKC-LYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL------- 339
Query: 293 SDSIEEVGS--SVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRG 350
E G L GH A V L+D F+++A D + R W ++ K H
Sbjct: 340 -----ENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLS 394
Query: 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379
Y +S ++ +G ++ ++ ++
Sbjct: 395 AITTFY--VSDNILVSGSENQFNIYNLRS 421
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 15/89 (16%)
Query: 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308
L +L GH+G ++ ++++ G LVS S DR+ R+W+++ + + V GHN
Sbjct: 155 LLQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIK----------KGCCTHVFEGHN 203
Query: 309 ARVWDCCLTD----SFIITAGEDCTCRVW 333
+ V + + +I+T D T VW
Sbjct: 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 302 SVLYGHNARVWDCC-LTDSFIITAGEDCTCRVWGSDGKQ-LKMIKEHIGRGIWRCLYDSL 359
+ L GH V C D+++IT +D RV+ S K+ L + H G G+W Y +
Sbjct: 115 TTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDG-GVWALKY-AH 172
Query: 360 SSLLVTAGFDSAIKV 374
+LV+ D ++V
Sbjct: 173 GGILVSGSTDRTVRV 187
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 101/269 (37%), Gaps = 62/269 (23%)
Query: 150 LAIGCSDNSIRVWDISNS--SIILEVH-SPERCLLYSMKLWGDNLEALR---IASGTIYN 203
L G +D ++RVWDI + + E H S RCL D +E I +G+ N
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL--------DIVEYKNIKYIVTGSRDN 227
Query: 204 EIIVWKVDWEHVAP----------LLNSPEGN-----------------HAHG----SSS 232
+ VWK+ E P + ++PE N HG S S
Sbjct: 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 287
Query: 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292
+ D L+ L GH I+ + + +S S D + RIW++
Sbjct: 288 YDNTLIVWDVAQMKC-LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL------- 339
Query: 293 SDSIEEVGS--SVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRG 350
E G L GH A V L+D F+++A D + R W ++ K H
Sbjct: 340 -----ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLS 394
Query: 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379
Y +S ++ +G ++ ++ ++
Sbjct: 395 AITTFY--VSDNILVSGSENQFNIYNLRS 421
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 16/108 (14%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289
+ +D K ++ D + L +L GH+G ++ ++++ G LVS S DR+ R+W+++
Sbjct: 137 TGADDKMIRVYDSINKKF-LLQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIK--- 191
Query: 290 WKDSDSIEEVGSSVLYGHNARVWDCCLTD----SFIITAGEDCTCRVW 333
+ + V GHN+ V + + +I+T D T VW
Sbjct: 192 -------KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 302 SVLYGHNARVWDCC-LTDSFIITAGEDCTCRVWGSDGKQ-LKMIKEHIGRGIWRCLYDSL 359
+ L GH V C D+++IT +D RV+ S K+ L + H G G+W Y +
Sbjct: 115 TTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDG-GVWALKY-AH 172
Query: 360 SSLLVTAGFDSAIKV 374
+LV+ D ++V
Sbjct: 173 GGILVSGSTDRTVRV 187
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 116/295 (39%), Gaps = 42/295 (14%)
Query: 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGE 326
CG+++VS SDD + ++W ++ L GH VW + D+ II+
Sbjct: 128 CGNRIVSGSDDNTLKVWS----------AVTGKCLRTLVGHTGGVWSSQMRDNIIISGST 177
Query: 327 DCTCRVWGSD-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-----F 380
D T +VW ++ G+ + + H RC++ +V+ D+ ++V +
Sbjct: 178 DRTLKVWNAETGECIHTLYGHT--STVRCMHLH-EKRVVSGSRDATLRVWDIETGQCLHV 234
Query: 381 LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440
L G + + +++GR + + +++ D ++E CLH TL TN
Sbjct: 235 LMGHVAA-VRCVQYDGRRVVSGA----YDFMVKVWDPETET--CLH-----TLQGHTNRV 282
Query: 441 YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDG---KGNMT 497
Y + S + + ++V + C+ L+ G++ L D GN
Sbjct: 283 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME----LKDNILVSGNAD 338
Query: 498 IVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQL 552
+ D+ T Q T + + C F+ T+ G +KLW L
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVT----CLQFNKNFVITSSDDGTVKLWDL 389
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 61/191 (31%)
Query: 148 RSLAIGCSDNSIRVWDISNSS---IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204
+ + G D ++RVWDI +++ + RC+ Y + R+ SG
Sbjct: 210 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---------DGRRVVSGAYDFM 260
Query: 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEW 264
+ VW PE T L L GH ++ +++
Sbjct: 261 VKVW------------DPE---------------------TETCLHTLQGHTNRVYSLQF 287
Query: 265 SSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV--LYGHNARVWDCCLTDSFII 322
G +VS S D S R+W+V E G+ + L GH + L D+ ++
Sbjct: 288 D--GIHVVSGSLDTSIRVWDV------------ETGNCIHTLTGHQSLTSGMELKDNILV 333
Query: 323 TAGEDCTCRVW 333
+ D T ++W
Sbjct: 334 SGNADSTVKIW 344
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 109/250 (43%), Gaps = 40/250 (16%)
Query: 147 NRSLAIGCSDNSIRVWDISN--SSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYN 203
++ + G DN+I++WD + IL H+ CL Y ++ I +G+ +
Sbjct: 143 DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV---------IITGSSDS 193
Query: 204 EIIVWKVDW--------EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH-TAVNLFR-LV 253
+ VW V+ H +L+ N + S + + D T + L R LV
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV 253
Query: 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313
GH ++ +++ +VS S DR+ ++W ++ + E V + L GH +
Sbjct: 254 GHRAAVNVVDFDD--KYIVSASGDRTIKVW--------NTSTCEFVRT--LNGHKRGIAC 301
Query: 314 CCLTDSFIITAGEDCTCRVWGSD-GKQLKMIKEHIGRGIWRCL-YDSLSSLLVTAGFDSA 371
D +++ D T R+W + G L++++ H + RC+ +D + +V+ +D
Sbjct: 302 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFD--NKRIVSGAYDGK 357
Query: 372 IKVHQFQAFL 381
IKV A L
Sbjct: 358 IKVWDLVAAL 367
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 40/142 (28%)
Query: 147 NRSLAIGCSDNSIRVWDISNSSI--ILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYN 203
+R + G SDN+IR+WDI + +LE H RC+ + K RI SG
Sbjct: 306 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK---------RIVSGAYDG 356
Query: 204 EIIVWKVDWEHVAPL-LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRI 262
+I VW + VA L +P G + L LV H G +FR+
Sbjct: 357 KIKVWDL----VAALDPRAPAG---------------------TLCLRTLVEHSGRVFRL 391
Query: 263 EWSSCGSKLVSVSDDRSARIWE 284
++ ++VS S D + IW+
Sbjct: 392 QFDEF--QIVSSSHDDTILIWD 411
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285
+ V H GS+F + WS G+K+ S S D++ +IW V
Sbjct: 233 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD-SIEEVGSSVLYGHNARVWD 313
H + + WS +L + S D S +W + K SD I G+ + N+ +W
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMN----KPSDHPIIIKGAHAMSSVNSVIW- 589
Query: 314 CCLTDSFIITAGEDCTCRVW 333
L ++ I++AG+D + W
Sbjct: 590 --LNETTIVSAGQDSNIKFW 607
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290
++D +C+++QD T ++ H G + + WS GSK+ + S D++A++W++ +
Sbjct: 63 ANDVRCWEVQDSGQTIPKAQQM--HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN-- 118
Query: 291 KDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMI 343
+ I + + V H W S ++T D T + W + M+
Sbjct: 119 -QAIQIAQHDAPVKTIH----WIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV 166
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 17/170 (10%)
Query: 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280
SP GN+ +S D + Q + L GHE + + W+ G+ L + S D+S
Sbjct: 70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSV 129
Query: 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNAR----VWDCCLTDSFIITAGEDCTCRVWGSD 336
+WEV E D E V SVL H VW + + +A D T +++ +
Sbjct: 130 WVWEVDEE-----DEYECV--SVLNSHTQDVKHVVWH--PSQELLASASYDDTVKLYREE 180
Query: 337 GKQLKMIKEHIGR--GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGS 384
G +W +D L + D +++ ++ +LPG+
Sbjct: 181 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRI--WRQYLPGN 228
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313
GH+ ++ ++ WS CG+ L S S D + IW+ K+ D E V + L GH V
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDDFECV--TTLEGHENEVKS 110
Query: 314 CCLTDS--FIITAGEDCTCRVWGSDGKQ----LKMIKEHIGRGIWRCLYDSLSSLLVTAG 367
S + T D + VW D + + ++ H + + ++ LL +A
Sbjct: 111 VAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT-QDVKHVVWHPSQELLASAS 169
Query: 368 FDSAIKVHQ 376
+D +K+++
Sbjct: 170 YDDTVKLYR 178
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 106/264 (40%), Gaps = 43/264 (16%)
Query: 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS----NSSIILEVHSPERCLLY----SMK 185
WV V F S D +IRVW+ NS+I+L+ E +++ +M
Sbjct: 891 WVHGVMF---SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK---QEIDVVFQENETMV 944
Query: 186 LWGDNLEALRIASGTIYNEIIVWKVDW---EHVAPLLNSPEGNHAHGSSSD--FKCFKLQ 240
L DN+ L++ +G ++D+ V+ SP + D K +L
Sbjct: 945 LAVDNIRGLQLIAGK------TGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELP 998
Query: 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300
+ + + VGH+ ++ I++++ G L+S S+D ++W W+ D +
Sbjct: 999 NNRVFSSG----VGHKKAVRHIQFTADGKTLISSSEDSVIQVWN-----WQTGDYV---- 1045
Query: 301 SSVLYGHNARVWDC-CLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS 358
L H V D L DS +++ D T +VW G+ + H G + C S
Sbjct: 1046 --FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGT-VLSCAISS 1102
Query: 359 LSSLLVTAGFDSAIKVHQFQAFLP 382
++ + D K+ F P
Sbjct: 1103 DATKFSSTSADKTAKIWSFDLLSP 1126
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 19/111 (17%)
Query: 243 QHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300
+ T NL RLV H +++ +S G ++ S D++ ++++ E G
Sbjct: 607 KKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA------------ETG 654
Query: 301 SSVL--YGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346
+L H V C + DS+I T D ++W S GK + EH
Sbjct: 655 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH 705
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 106/264 (40%), Gaps = 43/264 (16%)
Query: 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS----NSSIILEVHSPERCLLY----SMK 185
WV V F S D +IRVW+ NS+I+L+ E +++ +M
Sbjct: 884 WVHGVMF---SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK---QEIDVVFQENETMV 937
Query: 186 LWGDNLEALRIASGTIYNEIIVWKVDW---EHVAPLLNSPEGNHAHGSSSD--FKCFKLQ 240
L DN+ L++ +G ++D+ V+ SP + D K +L
Sbjct: 938 LAVDNIRGLQLIAGK------TGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELP 991
Query: 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300
+ + + VGH+ ++ I++++ G L+S S+D ++W W+ D +
Sbjct: 992 NNRVFSSG----VGHKKAVRHIQFTADGKTLISSSEDSVIQVWN-----WQTGDYV---- 1038
Query: 301 SSVLYGHNARVWDC-CLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS 358
L H V D L DS +++ D T +VW G+ + H G + C S
Sbjct: 1039 --FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGT-VLSCAISS 1095
Query: 359 LSSLLVTAGFDSAIKVHQFQAFLP 382
++ + D K+ F P
Sbjct: 1096 DATKFSSTSADKTAKIWSFDLLSP 1119
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 19/111 (17%)
Query: 243 QHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300
+ T NL RLV H +++ +S G ++ S D++ ++++ E G
Sbjct: 600 KKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA------------ETG 647
Query: 301 SSVL--YGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346
+L H V C + DS+I T D ++W S GK + EH
Sbjct: 648 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH 698
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Query: 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302
Q + + +L GHE + +++++ G L S S D SA +W S + E +G+
Sbjct: 19 QGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWY--------SLNGERLGT- 69
Query: 303 VLYGHNARVWDC---CLTDSFIITAGEDCTCRVW 333
L GH +W C T + +T D + ++W
Sbjct: 70 -LDGHTGTIWSIDVDCFT-KYCVTGSADYSIKLW 101
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 134 WVFDV-CFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176
W DV CF K C G +D SI++WD+SN + SP
Sbjct: 78 WSIDVDCFTKYC------VTGSADYSIKLWDVSNGQCVATWKSP 115
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310
+L+GH G I +E++ L+S SDD + RIW + + +S + YGH+
Sbjct: 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW-----HGGNGNS-----QNCFYGHSQS 291
Query: 311 VWDCC-LTDSFIITAGEDCTCRVW 333
+ + D +I+ D + R+W
Sbjct: 292 IVSASWVGDDKVISCSMDGSVRLW 315
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293
V + L H G + I+W+ +++V+ DR+A +W ++ WK +
Sbjct: 43 VQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 89
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS--SCGSKLVSVSDDRSARIWEVRA 287
S K F+++ + H ++ L GHEG ++R++W+ G+ L S S D IW+
Sbjct: 29 SDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86
Query: 288 EYW 290
W
Sbjct: 87 GRW 89
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 18/134 (13%)
Query: 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC-----LTDSFIITA 324
K V+ D +IW+ +SD+ V S L GH+ V D L S++ +
Sbjct: 172 KFVTGGADNLVKIWKY------NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV 225
Query: 325 GEDCTCRVWGSDGKQLKMIK-----EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379
+D TC +W D +Q K E +WR + ++L +G D+ KV ++
Sbjct: 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN--KVTLWKE 283
Query: 380 FLPGSLESHPEAKE 393
L G E E +
Sbjct: 284 NLEGKWEPAGEVHQ 297
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS--SCGSKLVSVSDDRSARIWEVRA 287
S K F+++ + H ++ L GHEG ++R++W+ G+ L S S D IW+
Sbjct: 29 SDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEEN 86
Query: 288 EYW 290
W
Sbjct: 87 GRW 89
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 18/134 (13%)
Query: 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC-----LTDSFIITA 324
K V+ D +IW+ +SD+ V S L GH+ V D L S+ +
Sbjct: 172 KFVTGGADNLVKIWKY------NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASV 225
Query: 325 GEDCTCRVWGSDGKQLKMIK-----EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379
+D TC +W D +Q K E +WR + ++L +G D+ KV ++
Sbjct: 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN--KVTLWKE 283
Query: 380 FLPGSLESHPEAKE 393
L G E E +
Sbjct: 284 NLEGKWEPAGEVHQ 297
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS--SCGSKLVSVSDDRSARIWEVRA 287
S K F+++ + H ++ L GHEG ++R++W+ G+ L S S D IW+
Sbjct: 31 SDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88
Query: 288 EYW 290
W
Sbjct: 89 GRW 91
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 18/134 (13%)
Query: 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC-----LTDSFIITA 324
K V+ D +IW+ +SD+ V S L GH+ V D L S++ +
Sbjct: 174 KFVTGGADNLVKIWKY------NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 227
Query: 325 GEDCTCRVWGSDGKQLKMIK-----EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379
+D TC +W D +Q K E +WR + ++L +G D+ KV ++
Sbjct: 228 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN--KVTLWKE 285
Query: 380 FLPGSLESHPEAKE 393
L G E E +
Sbjct: 286 NLEGKWEPAGEVHQ 299
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS--SCGSKLVSVSDDRSARIWEVRA 287
S K F+++ + H ++ L GHEG ++R++W+ G+ L S S D IW+
Sbjct: 29 SDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86
Query: 288 EYW 290
W
Sbjct: 87 GRW 89
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 18/134 (13%)
Query: 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC-----LTDSFIITA 324
K V+ D +IW+ +SD+ V S L GH+ V D L S++ +
Sbjct: 172 KFVTGGADNLVKIWKY------NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225
Query: 325 GEDCTCRVWGSDGKQ-----LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379
+D TC +W D +Q + +E +WR + ++L +G D+ KV ++
Sbjct: 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN--KVTLWKE 283
Query: 380 FLPGSLESHPEAKE 393
L G E E +
Sbjct: 284 NLEGKWEPAGEVHQ 297
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 248 NLFRLV--GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305
NL R + H I ++++ G L+S S D +IW V+ + L
Sbjct: 129 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK----------DGSNPRTLI 178
Query: 306 GHNARVWDCCLTD--SFIITAGEDCTCRVW 333
GH A V D + D +++A D T R+W
Sbjct: 179 GHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 248 NLFRLV--GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305
NL R + H I ++++ G L+S S D +IW V+ + L
Sbjct: 126 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK----------DGSNPRTLI 175
Query: 306 GHNARVWDCCLTD--SFIITAGEDCTCRVW 333
GH A V D + D +++A D T R+W
Sbjct: 176 GHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS--SCGSKLVSVSDDRSARIWEVRA 287
S K F+++ + H ++ L GHEG ++R++W+ G+ L S S D IW+
Sbjct: 29 SDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86
Query: 288 EYW 290
W
Sbjct: 87 GRW 89
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 18/134 (13%)
Query: 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC-----LTDSFIITA 324
K V+ D +IW+ +SD+ V S L GH+ V D L S++ +
Sbjct: 172 KFVTGGADNLVKIWKY------NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225
Query: 325 GEDCTCRVWGSDGKQLKMIK-----EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379
+D TC +W D +Q K E +WR + ++L +G D+ KV ++
Sbjct: 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN--KVTLWKE 283
Query: 380 FLPGSLESHPEAKE 393
L G E E +
Sbjct: 284 NLEGKWEPAGEVHQ 297
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293
V + L H G + ++W+ +++V+ DR+A +W ++ WK +
Sbjct: 43 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 89
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 9/161 (5%)
Query: 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280
+ +G +A +S D K +L D T R VGH+ + ++ S ++S S D++
Sbjct: 74 TADGAYALSASWD-KTLRLWDVA-TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQL 340
++W ++ + + S V N + D +T II+AG D + W + Q
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKAWNLN--QF 186
Query: 341 KMIKEHIGR--GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379
++ + IG I +L+ +AG D I + A
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 22/149 (14%)
Query: 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV-RAEYWKDSDSIEEV 299
D Q V + GH + ++ G+ +S S D++ R+W+V E ++
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR------- 102
Query: 300 GSSVLYGHNARVW--DCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIG-----RGIW 352
GH + V D S II+ D T +VW G+ L + H R +
Sbjct: 103 ----FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVP 158
Query: 353 RCLYDSLSSLLVTAGFDSAIK---VHQFQ 378
D S +++AG D +K ++QFQ
Sbjct: 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289
S S K K+ D T + L LVGH+ + + + S G ++S +DD++ R+W+
Sbjct: 313 SGSRDKTIKMWDVS-TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD----- 366
Query: 290 WKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVW 333
+K+ ++ + + + H D T +++T D T +VW
Sbjct: 367 YKNKRCMKTLNA---HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 9/161 (5%)
Query: 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280
+ +G +A +S D K +L D T R VGH+ + ++ S ++S S D++
Sbjct: 68 TADGAYALSASWD-KTLRLWDVA-TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQL 340
++W ++ + + S V N + D +T II+AG D + W + Q
Sbjct: 126 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKAWNLN--QF 180
Query: 341 KMIKEHIGR--GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379
++ + IG I +L+ +AG D I + A
Sbjct: 181 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 221
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 22/149 (14%)
Query: 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV-RAEYWKDSDSIEEV 299
D Q V + GH + ++ G+ +S S D++ R+W+V E ++
Sbjct: 44 DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR------- 96
Query: 300 GSSVLYGHNARVW--DCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIG-----RGIW 352
GH + V D S II+ D T +VW G+ L + H R +
Sbjct: 97 ----FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVP 152
Query: 353 RCLYDSLSSLLVTAGFDSAIK---VHQFQ 378
D S +++AG D +K ++QFQ
Sbjct: 153 NEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 9/161 (5%)
Query: 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280
+ +G +A +S D K +L D T R VGH+ + ++ S ++S S D++
Sbjct: 74 TADGAYALSASWD-KTLRLWDVA-TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQL 340
++W ++ + + S V N + D +T II+AG D + W + Q
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKAWNLN--QF 186
Query: 341 KMIKEHIGR--GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379
++ + IG I +L+ +AG D I + A
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 22/149 (14%)
Query: 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV-RAEYWKDSDSIEEV 299
D Q V + GH + ++ G+ +S S D++ R+W+V E ++
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR------- 102
Query: 300 GSSVLYGHNARVW--DCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIG-----RGIW 352
GH + V D S II+ D T +VW G+ L + H R +
Sbjct: 103 ----FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVP 158
Query: 353 RCLYDSLSSLLVTAGFDSAIK---VHQFQ 378
D S +++AG D +K ++QFQ
Sbjct: 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 9/161 (5%)
Query: 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280
+ +G +A +S D K +L D T R VGH+ + ++ S ++S S D++
Sbjct: 74 TADGAYALSASWD-KTLRLWDVA-TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQL 340
++W ++ + + S V N + D +T II+AG D + W + Q
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKAWNLN--QF 186
Query: 341 KMIKEHIGR--GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379
++ + IG I +L+ +AG D I + A
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 22/149 (14%)
Query: 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV-RAEYWKDSDSIEEV 299
D Q V + GH + ++ G+ +S S D++ R+W+V E ++
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR------- 102
Query: 300 GSSVLYGHNARVW--DCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIG-----RGIW 352
GH + V D S II+ D T +VW G+ L + H R +
Sbjct: 103 ----FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVP 158
Query: 353 RCLYDSLSSLLVTAGFDSAIK---VHQFQ 378
D S +++AG D +K ++QFQ
Sbjct: 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 9/161 (5%)
Query: 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280
+ +G +A +S D K +L D T R VGH+ + ++ S ++S S D++
Sbjct: 74 TADGAYALSASWD-KTLRLWDVA-TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQL 340
++W ++ + + S V N + D +T II+AG D + W + Q
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKAWNLN--QF 186
Query: 341 KMIKEHIGR--GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379
++ + IG I +L+ +AG D I + A
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 22/149 (14%)
Query: 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV-RAEYWKDSDSIEEV 299
D Q V + GH + ++ G+ +S S D++ R+W+V E ++
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR------- 102
Query: 300 GSSVLYGHNARVW--DCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIG-----RGIW 352
GH + V D S II+ D T +VW G+ L + H R +
Sbjct: 103 ----FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVP 158
Query: 353 RCLYDSLSSLLVTAGFDSAIK---VHQFQ 378
D S +++AG D +K ++QFQ
Sbjct: 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274
V+ ++ S +G A S D +L D T R VGH + + +SS ++VS
Sbjct: 89 VSDVVISSDGQFALSGSWD-GTLRLWDLT-TGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 146
Query: 275 SDDRSARIWEVRA--EYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRV 332
S D++ ++W +Y +S E S V + N+ ++ I++ G D +V
Sbjct: 147 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS-------SNPIIVSCGWDKLVKV 199
Query: 333 WGSDGKQLKMIKEHIG 348
W +LK HIG
Sbjct: 200 WNLANCKLKT--NHIG 213
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274
V+ ++ S +G A S D +L D T R VGH + + +SS ++VS
Sbjct: 66 VSDVVISSDGQFALSGSWD-GTLRLWDLT-TGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 123
Query: 275 SDDRSARIWEVRA--EYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRV 332
S D++ ++W +Y +S E S V + N+ ++ I++ G D +V
Sbjct: 124 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS-------SNPIIVSCGWDKLVKV 176
Query: 333 WGSDGKQLKMIKEHIG 348
W +LK HIG
Sbjct: 177 WNLANCKLKT--NHIG 190
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 9/161 (5%)
Query: 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280
+ +G +A +S D K +L D T R VGH+ + ++ S ++S S D++
Sbjct: 74 TADGAYALSASWD-KTLRLWDVA-TGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQL 340
++W ++ + + S V N + D +T II+AG D + W + Q
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKXVKAWNLN--QF 186
Query: 341 KMIKEHIGR--GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379
++ + IG I +L+ +AG D I + A
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAA 227
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV 299
+D + V RL GH + + SS G +S S D R+W++ A V
Sbjct: 414 KDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA----------GV 463
Query: 300 GSSVLYGHNARVWDCC--LTDSFIITAGEDCTCRVWGSDGKQLKMIKE-HIGRGIW---- 352
+ GH V L + I++A D T ++W + G+ I E G W
Sbjct: 464 STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCV 523
Query: 353 RCLYDSLSSLLVTAGFDSAIKV 374
R ++L +V+A +D +KV
Sbjct: 524 RFSPNTLQPTIVSASWDKTVKV 545
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304
V+ R VGH + + +S ++VS S DR+ ++W E +I E G
Sbjct: 461 AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC---KYTISEGGE--- 514
Query: 305 YGHNARVWDCCLTDS------FIITAGEDCTCRVW 333
GH R W C+ S I++A D T +VW
Sbjct: 515 -GH--RDWVSCVRFSPNTLQPTIVSASWDKTVKVW 546
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313
GHE + + WS+ G L + S D+S IWE D E SVL H+ V
Sbjct: 105 GHENEVKGVAWSNDGYYLATCSRDKSVWIWET------DESGEEYECISVLQEHSQDVKH 158
Query: 314 CCL--TDSFIITAGEDCTCRVW---GSDGKQLKMIKEHIGRGIWRCLYDSLSSL--LVTA 366
+++ + ++ D T R+W D + + ++ H G +W +D + L +
Sbjct: 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT-VWSSDFDKTEGVFRLCSG 217
Query: 367 GFDSAIKVHQF 377
DS ++V ++
Sbjct: 218 SDDSTVRVWKY 228
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 19/86 (22%)
Query: 485 DWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIE-------------------RQLL 525
D V +G G G++ R+V V PQ+S +A +E + ++
Sbjct: 293 DAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMV 352
Query: 526 GTYWCKSLGHRFIFTADPKGRLKLWQ 551
+C +G F T + G ++L+Q
Sbjct: 353 AGAYCVMMGSMFAGTEEAPGEIELFQ 378
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 19/86 (22%)
Query: 485 DWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIE-------------------RQLL 525
D V +G G G++ R+V V PQ+S +A +E + ++
Sbjct: 313 DAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMV 372
Query: 526 GTYWCKSLGHRFIFTADPKGRLKLWQ 551
+C +G F T + G ++L+Q
Sbjct: 373 AGAYCVMMGSMFAGTEEAPGEIELFQ 398
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDS 293
K L D ++ + L H+ IF+++WS L S DR +W++ + S
Sbjct: 302 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 361
Query: 294 DSIEEVGSSVLY----GHNARVWDCCLTDS---FIITAGEDCTCRVW 333
E G L GH A++ D + I + ED +VW
Sbjct: 362 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 250 FRLVGHEGSIFRIEWS-SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308
RL GH+ + + W+ + L+S SDD + +W++ A K+ I+ ++ GH
Sbjct: 177 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATP-KEHRVID--AKNIFTGHT 233
Query: 309 ARVWDCC---LTDSFIITAGEDCTCRVWGS 335
A V D L +S + +D +W +
Sbjct: 234 AVVEDVAWHLLHESLFGSVADDQKLMIWDT 263
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDS 293
K L D ++ + L H+ IF+++WS L S DR +W++ + S
Sbjct: 296 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS 355
Query: 294 DSIEEVGSSVLY----GHNARVWDCCLTDS---FIITAGEDCTCRVW 333
E G L GH A++ D + I + ED +VW
Sbjct: 356 PEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 250 FRLVGHEGSIFRIEWS-SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308
RL GH+ + + W+ + L+S SDD + +W++ A K+ ++ ++ GH
Sbjct: 171 LRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISA-VPKEGKVVD--AKTIFTGHT 227
Query: 309 ARVWDCC---LTDSFIITAGEDCTCRVWGS 335
A V D L +S + +D +W +
Sbjct: 228 AVVEDVSWHLLHESLFGSVADDQKLMIWDT 257
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDS 293
K L D ++ + L H+ IF+++WS L S DR +W++ + S
Sbjct: 300 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359
Query: 294 DSIEEVGSSVLY----GHNARVWDCCLTDS---FIITAGEDCTCRVW 333
E G L GH A++ D + I + ED +VW
Sbjct: 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 250 FRLVGHEGSIFRIEWS-SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308
RL GH+ + + W+ + L+S SDD + +W++ A K+ I+ ++ GH
Sbjct: 175 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATP-KEHRVID--AKNIFTGHT 231
Query: 309 ARVWDCC---LTDSFIITAGEDCTCRVWGS 335
A V D L +S + +D +W +
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDT 261
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 250 FRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308
RL GH+ + + W+S L+S SDD + +W++ A K+ ++ ++ GH+
Sbjct: 173 LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGP-KEGKIVD--AKAIFTGHS 229
Query: 309 ARVWDCC---LTDSFIITAGEDCTCRVWGS 335
A V D L +S + +D +W +
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLMIWDT 259
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 8/113 (7%)
Query: 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRA 287
+ S K L D ++ + L H+ IF++ WS L S DR +W++
Sbjct: 292 ATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Query: 288 EYWKDSDSIEEVGSSVLY----GHNARVWDCCLTDS---FIITAGEDCTCRVW 333
+ S E G L GH A++ D + I + ED ++W
Sbjct: 352 IGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 250 FRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308
RL GH+ + + W+S L+S SDD + +W++ A K+ ++ ++ GH+
Sbjct: 173 LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGP-KEGKIVD--AKAIFTGHS 229
Query: 309 ARVWDCC---LTDSFIITAGEDCTCRVWGS 335
A V D L +S + +D +W +
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLXIWDT 259
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 8/107 (7%)
Query: 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDS 293
K L D ++ + L H+ IF++ WS L S DR +W++ + S
Sbjct: 298 KTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQS 357
Query: 294 DSIEEVGSSVLY----GHNARVWDCCLTDS---FIITAGEDCTCRVW 333
E G L GH A++ D + I + ED ++W
Sbjct: 358 AEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDS 293
K L D ++ + L H+ IF+++WS L S DR +W++ + S
Sbjct: 304 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 363
Query: 294 DSIEEVGSSVLY----GHNARVWDCCLTDS---FIITAGEDCTCRVW 333
E G L GH A++ D + I + ED +VW
Sbjct: 364 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 250 FRLVGHEGSIFRIEWS-SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308
RL GH+ + + W+ + L+S SDD + +W++ A K+ I+ ++ GH
Sbjct: 179 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATP-KEHRVID--AKNIFTGHT 235
Query: 309 ARVWDCC---LTDSFIITAGEDCTCRVWGS 335
A V D L +S + +D +W +
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQKLMIWDT 265
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 77/199 (38%), Gaps = 31/199 (15%)
Query: 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ--------QHTAVNLFRLVG 254
NE++V VD L+N G + + + C L ++ A+ + LV
Sbjct: 939 NEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVN 998
Query: 255 ---------HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305
H+ +++ I++++ L+S SDD ++W W+ I L
Sbjct: 999 NRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN-----WQLDKCI------FLR 1047
Query: 306 GHNARVWDC-CLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGRGIWRCLYDSLSSLL 363
GH V D L +S +++ D T +VW G + K H G + C ++
Sbjct: 1048 GHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQG-TVLSCDISHDATKF 1106
Query: 364 VTAGFDSAIKVHQFQAFLP 382
+ D K+ F LP
Sbjct: 1107 SSTSADKTAKIWSFDLLLP 1125
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 306 GHNARVWD---CCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKE-------HIGRGIWRC 354
GH A V D C D+ I + EDCT VW DG + ++E H R
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 355 LYDSLSSLLVTAGFDSAIKV 374
+ + ++L++AG D+ I V
Sbjct: 139 WHPTAQNVLLSAGCDNVILV 158
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 16/135 (11%)
Query: 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG---NH 226
ILE HS + + +N ++ + SG+ +++WK+ E P H
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 227 AHGSS----SDFKCFKLQDQQHTAVNLF---------RLVGHEGSIFRIEWSSCGSKLVS 273
H S S CF + + L+ R VGH+ ++ + +S +++S
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 274 VSDDRSARIWEVRAE 288
+R ++W + E
Sbjct: 136 AGAEREIKLWNILGE 150
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE-----YWKD-------SDSIEEV 299
GHE I I + G+ + SDD + R++++RA+ Y D S S +
Sbjct: 233 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 292
Query: 300 GSSVLYGH---NARVWDCCLTDSFIITAGED 327
G +L G+ N VWD D + AG D
Sbjct: 293 GRLLLAGYDDFNCNVWDALKADRAGVLAGHD 323
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE-----YWKD-------SDSIEEV 299
GHE I I + G+ + SDD + R++++RA+ Y D S S +
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 300 GSSVLYGH---NARVWDCCLTDSFIITAGED 327
G +L G+ N VWD D + AG D
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHD 312
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE-----YWKD-------SDSIEEV 299
GHE I I + G+ + SDD + R++++RA+ Y D S S +
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 300 GSSVLYGH---NARVWDCCLTDSFIITAGED 327
G +L G+ N VWD D + AG D
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHD 312
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE-----YWKD-------SDSIEEV 299
GHE I I + G+ + SDD + R++++RA+ Y D S S +
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 300 GSSVLYGH---NARVWDCCLTDSFIITAGED 327
G +L G+ N VWD D + AG D
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHD 312
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE-----YWKD-------SDSIEEV 299
GHE I I + G+ + SDD + R++++RA+ Y D S S +
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 300 GSSVLYGH---NARVWDCCLTDSFIITAGED 327
G +L G+ N VWD D + AG D
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHD 312
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 58/151 (38%), Gaps = 27/151 (17%)
Query: 249 LFRLVGHEGSIFRIEWSSC--GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306
+ L GHEG ++++ W+ G+ L S S DR IW W+ S G
Sbjct: 50 IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE--------HAG 101
Query: 307 HNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364
H++ V C D +I A C GS + ++ + G G W +
Sbjct: 102 HDSSVNSVCWAPHDYGLILA---C-----GSSDGAISLLT-YTGEGQWEV------KKIN 146
Query: 365 TAGFDSAIKVHQFQAFLPGSLESHPEAKEFN 395
A V A +PGSL HP ++ N
Sbjct: 147 NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPN 177
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 21/132 (15%)
Query: 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV---RAEYWKDSDSIEEVGSSVLYGH 307
RL GH + + S+ G+ VS S D S R+W + + +Y GH
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQY-------------KFLGH 108
Query: 308 NARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLS---SL 362
V + + I++ G D RVW G+ + + C+ S S +
Sbjct: 109 TKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPV 168
Query: 363 LVTAGFDSAIKV 374
+V+ G+D+ +KV
Sbjct: 169 IVSGGWDNLVKV 180
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 221 SPEGNHAHGSSSD--FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278
S GN A +S D + + LQ+ Q ++ +GH + + +S ++VS D
Sbjct: 76 SNNGNFAVSASWDHSLRLWNLQNGQCQ----YKFLGHTKDVLSVAFSPDNRQIVSGGRDN 131
Query: 279 SARIWEVRAE 288
+ R+W V+ E
Sbjct: 132 ALRVWNVKGE 141
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 23/179 (12%)
Query: 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL 181
L L+Q + + ++ V ++K N LA+G S +++WD+ + + S +
Sbjct: 149 LQLLQ-MEQPGEYISSVAWIKEGN---YLAVGTSSAEVQLWDVQQQKRLRNMTS-HSARV 203
Query: 182 YSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN----------SPEGNHAHGSS 231
S+ W + + SG I++ + +V HVA L +P+G H
Sbjct: 204 GSLS-WNSYILSSGSRSGHIHHHDV--RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG 260
Query: 232 SD--FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV---SDDRSARIWEV 285
+D + + V L H+G++ + W S +++ + DR RIW V
Sbjct: 261 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 92/262 (35%), Gaps = 55/262 (20%)
Query: 42 SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKL 101
S ++V L+D++ +R H R+ +S N + GS S + E V
Sbjct: 178 SSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVAT 236
Query: 102 FELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161
LS +SQ +VC L+ R LA G +DN + V
Sbjct: 237 ------LSGHSQ-----------------------EVCGLRWAPDGRHLASGGNDNLVNV 267
Query: 162 WDISNSS---IILEVHSPERCLLYSMK--LWGDNLEALRIASGTIYNEIIVWKV------ 210
W + + L+ + + + ++ W N+ L GT I +W V
Sbjct: 268 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV--LATGGGTSDRHIRIWNVCSGACL 325
Query: 211 ----DWEHVAPLLNSPEGNH---AHG-SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRI 262
V +L SP HG + + +K T + L GH + +
Sbjct: 326 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP----TMAKVAELKGHTSRVLSL 381
Query: 263 EWSSCGSKLVSVSDDRSARIWE 284
S G+ + S + D + R+W
Sbjct: 382 TMSPDGATVASAAADETLRLWR 403
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 36/201 (17%)
Query: 108 LSPNSQYQPETC----VNLSLVQS------LPRLSHWVFDVCFLKVCNGNRSLAIGCSDN 157
SP+SQY VN+ V+S L ++ + + + LA G D
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY---SPDGKYLASGAIDG 186
Query: 158 SIRVWDISNSSII--LEVHS-PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214
I ++DI+ ++ LE H+ P R L +S + + L AS Y I ++ V +
Sbjct: 187 IINIFDIATGKLLHTLEGHAMPIRSLTFSP-----DSQLLVTASDDGY--IKIYDVQHAN 239
Query: 215 VAPLLNS-----------PEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIE 263
+A L+ P+ H SSSD T V+ F H+ ++ ++
Sbjct: 240 LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF--FDHQDQVWGVK 297
Query: 264 WSSCGSKLVSVSDDRSARIWE 284
++ GSK+VSV DD+ I++
Sbjct: 298 YNGNGSKIVSVGDDQEIHIYD 318
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 23/179 (12%)
Query: 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL 181
L L+Q + + ++ V ++K N LA+G S +++WD+ + + S +
Sbjct: 138 LQLLQ-MEQPGEYISSVAWIKEGN---YLAVGTSSAEVQLWDVQQQKRLRNMTS-HSARV 192
Query: 182 YSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN----------SPEGNHAHGSS 231
S+ W + + SG I++ + +V HVA L +P+G H
Sbjct: 193 GSLS-WNSYILSSGSRSGHIHHHDV--RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG 249
Query: 232 SD--FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV---SDDRSARIWEV 285
+D + + V L H+G++ + W S +++ + DR RIW V
Sbjct: 250 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 92/262 (35%), Gaps = 55/262 (20%)
Query: 42 SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKL 101
S ++V L+D++ +R H R+ +S N + GS S + E V
Sbjct: 167 SSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVAT 225
Query: 102 FELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161
LS +SQ +VC L+ R LA G +DN + V
Sbjct: 226 ------LSGHSQ-----------------------EVCGLRWAPDGRHLASGGNDNLVNV 256
Query: 162 WDISNSS---IILEVHSPERCLLYSMKL--WGDNLEALRIASGTIYNEIIVWKV------ 210
W + + L+ + + + ++ W N+ L GT I +W V
Sbjct: 257 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV--LATGGGTSDRHIRIWNVCSGACL 314
Query: 211 ----DWEHVAPLLNSPEGNH---AHG-SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRI 262
V +L SP HG + + +K T + L GH + +
Sbjct: 315 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP----TMAKVAELKGHTSRVLSL 370
Query: 263 EWSSCGSKLVSVSDDRSARIWE 284
S G+ + S + D + R+W
Sbjct: 371 TMSPDGATVASAAADETLRLWR 392
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 23/179 (12%)
Query: 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL 181
L L+Q + + ++ V ++K N LA+G S +++WD+ + + S +
Sbjct: 58 LQLLQ-MEQPGEYISSVAWIKEGN---YLAVGTSSAEVQLWDVQQQKRLRNMTS-HSARV 112
Query: 182 YSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN----------SPEGNHAHGSS 231
S+ W + + SG I++ + +V HVA L +P+G H
Sbjct: 113 GSLS-WNSYILSSGSRSGHIHHHDV--RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG 169
Query: 232 SD--FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV---SDDRSARIWEV 285
+D + + V L H+G++ + W S +++ + DR RIW V
Sbjct: 170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 92/262 (35%), Gaps = 55/262 (20%)
Query: 42 SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKL 101
S ++V L+D++ +R H R+ +S N + GS S + E V
Sbjct: 87 SSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA- 144
Query: 102 FELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161
LS +SQ +VC L+ R LA G +DN + V
Sbjct: 145 -----TLSGHSQ-----------------------EVCGLRWAPDGRHLASGGNDNLVNV 176
Query: 162 WDISNSS---IILEVHSPERCLLYSMKL--WGDNLEALRIASGTIYNEIIVWKV------ 210
W + + L+ + + + ++ W N+ L GT I +W V
Sbjct: 177 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV--LATGGGTSDRHIRIWNVCSGACL 234
Query: 211 ----DWEHVAPLLNSPEGNH---AHG-SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRI 262
V +L SP HG + + +K T + L GH + +
Sbjct: 235 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP----TMAKVAELKGHTSRVLSL 290
Query: 263 EWSSCGSKLVSVSDDRSARIWE 284
S G+ + S + D + R+W
Sbjct: 291 TMSPDGATVASAAADETLRLWR 312
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 302 SVLYGHNARVWDCC---LTDSFIITAGEDCTCRVWG-SDGKQLKMIKE-------HIGRG 350
++ GH A V D D+ I + EDCT VW DG + ++E H R
Sbjct: 75 PLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV 134
Query: 351 IWRCLYDSLSSLLVTAGFDSAIKV 374
+ + ++L++AG D+ I V
Sbjct: 135 GIVAWHPTAQNVLLSAGXDNVILV 158
>pdb|1KV3|A Chain A, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|B Chain B, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|C Chain C, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|D Chain D, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|E Chain E, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|F Chain F, Human Tissue Transglutaminase In Gdp Bound Form
pdb|2Q3Z|A Chain A, Transglutaminase 2 Undergoes Large Conformational Change
Upon Activation
Length = 687
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 424 CLHLTSEDTL--YIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKY 479
++L SE+ Y+ T G++Y + ++ WN Q +G+ IC+ LL PK+
Sbjct: 147 AVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWN-FGQFQDGILDICLILLDVNPKF 203
>pdb|3S3J|A Chain A, Transglutaminase 2 In Complex With A Novel Inhibitor
pdb|3S3P|A Chain A, Transglutaminase 2 In Complex With A Novel Inhibitor
pdb|3S3S|A Chain A, Transglutaminase 2 In Complex With A Novel Inhibitor
Length = 694
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 424 CLHLTSEDTL--YIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKY 479
++L SE+ Y+ T G++Y + ++ WN Q +G+ IC+ LL PK+
Sbjct: 154 AVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWN-FGQFEDGILDICLILLDVNPKF 210
>pdb|3LY6|A Chain A, Crystal Structure Of Human Transglutaminase 2 Complex With
Adenosine 5' Triphosphate
pdb|3LY6|B Chain B, Crystal Structure Of Human Transglutaminase 2 Complex With
Adenosine 5' Triphosphate
pdb|3LY6|C Chain C, Crystal Structure Of Human Transglutaminase 2 Complex With
Adenosine 5' Triphosphate
Length = 697
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 424 CLHLTSEDTL--YIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKY 479
++L SE+ Y+ T G++Y + ++ WN Q +G+ IC+ LL PK+
Sbjct: 147 AVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWN-FGQFEDGILDICLILLDVNPKF 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,672,351
Number of Sequences: 62578
Number of extensions: 1009573
Number of successful extensions: 2282
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1868
Number of HSP's gapped (non-prelim): 378
length of query: 821
length of database: 14,973,337
effective HSP length: 107
effective length of query: 714
effective length of database: 8,277,491
effective search space: 5910128574
effective search space used: 5910128574
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)