Query 003423
Match_columns 821
No_of_seqs 640 out of 4436
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 23:09:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0318 WD40 repeat stress pro 100.0 3.1E-48 6.7E-53 380.5 56.4 520 15-670 57-602 (603)
2 KOG0319 WD40-repeat-containing 100.0 2.7E-46 5.7E-51 381.8 44.4 568 23-726 25-623 (775)
3 KOG0974 WD-repeat protein WDR6 100.0 2.1E-43 4.4E-48 375.5 42.5 647 15-805 5-653 (967)
4 KOG0271 Notchless-like WD40 re 100.0 4.4E-44 9.6E-49 337.5 29.4 325 123-608 106-479 (480)
5 KOG0319 WD40-repeat-containing 100.0 4.5E-42 9.7E-47 350.9 43.8 511 4-669 84-618 (775)
6 KOG0318 WD40 repeat stress pro 100.0 3.3E-39 7.1E-44 317.2 55.1 533 35-722 30-602 (603)
7 KOG0291 WD40-repeat-containing 100.0 7.7E-39 1.7E-43 327.4 59.0 553 4-675 35-617 (893)
8 KOG0306 WD40-repeat-containing 100.0 3.8E-40 8.3E-45 336.7 48.2 536 35-730 34-672 (888)
9 KOG0306 WD40-repeat-containing 100.0 4.4E-39 9.5E-44 329.0 47.1 543 5-673 44-667 (888)
10 KOG0271 Notchless-like WD40 re 100.0 8.9E-41 1.9E-45 315.3 28.5 320 16-443 114-475 (480)
11 KOG0291 WD40-repeat-containing 100.0 2.2E-35 4.7E-40 302.2 58.1 561 22-740 19-629 (893)
12 KOG0272 U4/U6 small nuclear ri 100.0 2.5E-39 5.3E-44 310.0 21.9 279 17-376 175-458 (459)
13 KOG0276 Vesicle coat complex C 100.0 1E-35 2.2E-40 298.1 41.3 460 16-611 12-491 (794)
14 KOG0272 U4/U6 small nuclear ri 100.0 4.1E-37 8.9E-42 294.8 23.0 282 130-608 173-458 (459)
15 KOG0286 G-protein beta subunit 100.0 3.8E-35 8.3E-40 268.1 31.1 284 16-376 54-343 (343)
16 KOG0292 Vesicle coat complex C 100.0 1.2E-32 2.6E-37 286.3 46.6 303 16-378 8-321 (1202)
17 KOG0279 G protein beta subunit 100.0 6.2E-34 1.3E-38 258.8 32.4 296 122-553 5-313 (315)
18 KOG1408 WD40 repeat protein [F 100.0 7.6E-33 1.6E-37 281.1 40.1 522 5-612 59-715 (1080)
19 KOG0315 G-protein beta subunit 100.0 6.5E-34 1.4E-38 253.9 28.2 281 1-357 17-309 (311)
20 KOG0276 Vesicle coat complex C 100.0 3.1E-32 6.8E-37 273.2 42.1 466 64-721 12-489 (794)
21 KOG2106 Uncharacterized conser 100.0 2.3E-31 4.9E-36 260.6 46.7 505 16-669 103-625 (626)
22 KOG0286 G-protein beta subunit 100.0 7.5E-33 1.6E-37 253.1 33.4 296 121-608 44-343 (343)
23 KOG0273 Beta-transducin family 100.0 2.4E-33 5.1E-38 272.6 30.9 317 16-446 177-521 (524)
24 KOG0273 Beta-transducin family 100.0 5.9E-33 1.3E-37 269.8 30.4 333 128-670 174-523 (524)
25 KOG0279 G protein beta subunit 100.0 1.7E-32 3.6E-37 249.4 31.2 283 16-378 14-313 (315)
26 KOG1063 RNA polymerase II elon 100.0 2.2E-31 4.8E-36 270.8 42.0 561 35-722 25-699 (764)
27 KOG0645 WD40 repeat protein [G 100.0 2.9E-31 6.3E-36 240.3 33.0 295 122-502 4-311 (312)
28 KOG0296 Angio-associated migra 100.0 1.8E-31 4E-36 251.6 33.0 335 124-610 56-398 (399)
29 KOG0285 Pleiotropic regulator 100.0 3.3E-32 7.3E-37 255.2 26.3 298 118-505 137-442 (460)
30 KOG0295 WD40 repeat-containing 100.0 1.9E-32 4.1E-37 258.0 23.8 280 16-377 107-405 (406)
31 KOG0315 G-protein beta subunit 100.0 2E-31 4.3E-36 238.1 27.9 281 37-388 12-299 (311)
32 KOG0292 Vesicle coat complex C 100.0 1E-29 2.2E-34 264.7 43.4 318 64-504 8-350 (1202)
33 KOG0263 Transcription initiati 100.0 9.1E-32 2E-36 279.1 24.6 268 18-379 379-650 (707)
34 KOG1539 WD repeat protein [Gen 100.0 8.1E-28 1.7E-32 250.0 51.8 574 3-730 55-656 (910)
35 KOG0285 Pleiotropic regulator 100.0 7.8E-31 1.7E-35 246.1 26.4 280 16-378 150-439 (460)
36 KOG2048 WD40 repeat protein [G 100.0 5.8E-28 1.3E-32 245.9 47.8 481 2-611 45-549 (691)
37 KOG0284 Polyadenylation factor 100.0 4E-32 8.8E-37 259.3 16.2 279 16-377 95-379 (464)
38 KOG1063 RNA polymerase II elon 100.0 2.6E-28 5.5E-33 248.6 42.7 579 4-670 34-763 (764)
39 KOG0281 Beta-TrCP (transducin 100.0 4.6E-32 1E-36 253.1 13.5 254 2-335 215-476 (499)
40 KOG0645 WD40 repeat protein [G 100.0 4.8E-29 1E-33 226.0 30.7 283 16-378 13-311 (312)
41 KOG0295 WD40 repeat-containing 100.0 2.9E-30 6.4E-35 243.3 23.2 292 180-669 110-405 (406)
42 KOG2106 Uncharacterized conser 100.0 3.1E-27 6.8E-32 231.7 44.0 465 5-609 135-625 (626)
43 KOG0263 Transcription initiati 100.0 1.3E-30 2.9E-35 270.5 20.2 209 245-612 440-651 (707)
44 KOG0281 Beta-TrCP (transducin 100.0 3.8E-31 8.2E-36 247.0 14.0 268 90-449 210-478 (499)
45 KOG0296 Angio-associated migra 100.0 4.4E-29 9.5E-34 235.6 27.5 294 1-377 83-397 (399)
46 KOG1539 WD repeat protein [Gen 100.0 9.6E-26 2.1E-30 234.7 52.9 573 33-765 45-646 (910)
47 KOG2048 WD40 repeat protein [G 100.0 1.4E-25 3.1E-30 228.6 51.0 502 16-672 24-550 (691)
48 KOG0265 U5 snRNP-specific prot 100.0 2.2E-28 4.8E-33 225.0 27.6 204 123-378 38-246 (338)
49 KOG1408 WD40 repeat protein [F 100.0 1.2E-26 2.6E-31 236.4 41.1 560 22-671 42-714 (1080)
50 KOG0265 U5 snRNP-specific prot 100.0 3.6E-28 7.8E-33 223.6 26.9 281 16-375 46-335 (338)
51 KOG0277 Peroxisomal targeting 100.0 2.4E-28 5.2E-33 219.2 23.8 282 21-377 12-308 (311)
52 KOG0266 WD40 repeat-containing 100.0 5.9E-28 1.3E-32 260.4 30.7 281 16-378 158-454 (456)
53 KOG0293 WD40 repeat-containing 100.0 4.5E-28 9.7E-33 231.8 24.6 293 247-610 215-513 (519)
54 KOG0284 Polyadenylation factor 100.0 5.2E-29 1.1E-33 238.2 17.5 271 66-441 97-372 (464)
55 cd00200 WD40 WD40 domain, foun 100.0 1.1E-26 2.3E-31 239.6 34.1 278 16-376 8-289 (289)
56 PLN00181 protein SPA1-RELATED; 100.0 2.5E-26 5.4E-31 267.6 37.7 286 16-377 482-792 (793)
57 KOG0316 Conserved WD40 repeat- 100.0 7.8E-27 1.7E-31 207.0 24.5 275 16-376 16-297 (307)
58 KOG0313 Microtubule binding pr 100.0 3.6E-26 7.7E-31 217.0 27.4 212 130-379 103-331 (423)
59 KOG0316 Conserved WD40 repeat- 100.0 3.4E-26 7.3E-31 203.0 25.4 251 123-451 8-260 (307)
60 KOG0266 WD40 repeat-containing 100.0 4.9E-26 1.1E-30 245.5 32.1 276 63-438 157-441 (456)
61 KOG0282 mRNA splicing factor [ 100.0 3.5E-27 7.6E-32 230.9 18.3 293 245-608 203-503 (503)
62 KOG0278 Serine/threonine kinas 99.9 7E-27 1.5E-31 209.1 17.7 203 126-378 8-213 (334)
63 PLN00181 protein SPA1-RELATED; 99.9 1.9E-24 4.1E-29 251.9 40.7 319 43-445 457-790 (793)
64 cd00200 WD40 WD40 domain, foun 99.9 1.3E-24 2.8E-29 224.0 35.0 282 126-500 3-289 (289)
65 KOG0274 Cdc4 and related F-box 99.9 1.5E-25 3.3E-30 239.7 28.6 271 17-379 208-483 (537)
66 KOG0313 Microtubule binding pr 99.9 2.4E-25 5.2E-30 211.4 26.2 272 35-377 115-417 (423)
67 KOG0293 WD40 repeat-containing 99.9 1.2E-25 2.6E-30 215.3 22.3 280 16-378 223-513 (519)
68 KOG0310 Conserved WD40 repeat- 99.9 6.5E-25 1.4E-29 215.6 25.5 290 6-377 11-308 (487)
69 KOG0268 Sof1-like rRNA process 99.9 6.6E-26 1.4E-30 213.7 17.6 291 247-673 57-348 (433)
70 KOG0277 Peroxisomal targeting 99.9 7.2E-25 1.6E-29 197.0 22.5 254 95-438 36-298 (311)
71 KOG0275 Conserved WD40 repeat- 99.9 1.3E-25 2.8E-30 208.1 17.4 282 190-608 222-507 (508)
72 KOG0288 WD40 repeat protein Ti 99.9 7.9E-26 1.7E-30 216.9 16.6 204 123-379 166-372 (459)
73 KOG0282 mRNA splicing factor [ 99.9 1.9E-25 4.1E-30 218.8 18.2 287 55-443 205-500 (503)
74 KOG0301 Phospholipase A2-activ 99.9 1.4E-24 3.1E-29 221.6 25.0 285 122-505 4-291 (745)
75 KOG0772 Uncharacterized conser 99.9 7.3E-25 1.6E-29 215.8 21.7 298 16-377 166-486 (641)
76 KOG0308 Conserved WD40 repeat- 99.9 6.5E-25 1.4E-29 222.3 21.0 271 35-378 37-327 (735)
77 KOG0274 Cdc4 and related F-box 99.9 5.3E-24 1.1E-28 227.9 29.1 260 89-449 220-483 (537)
78 KOG0283 WD40 repeat-containing 99.9 1E-24 2.2E-29 229.1 22.6 314 123-505 257-579 (712)
79 KOG0275 Conserved WD40 repeat- 99.9 1.7E-25 3.6E-30 207.4 14.7 250 17-379 213-468 (508)
80 KOG0278 Serine/threonine kinas 99.9 6E-25 1.3E-29 196.8 16.3 279 16-379 13-298 (334)
81 KOG0294 WD40 repeat-containing 99.9 1.1E-22 2.3E-27 188.9 29.3 276 195-556 3-284 (362)
82 KOG0643 Translation initiation 99.9 4.6E-23 1E-27 186.8 25.9 280 16-379 9-318 (327)
83 KOG0973 Histone transcription 99.9 1.5E-23 3.3E-28 226.0 26.9 330 175-613 10-358 (942)
84 KOG0310 Conserved WD40 repeat- 99.9 1.5E-23 3.3E-28 206.0 24.3 290 44-443 9-304 (487)
85 KOG0647 mRNA export protein (c 99.9 3.1E-23 6.6E-28 191.4 24.3 271 17-366 27-311 (347)
86 KOG0299 U3 snoRNP-associated p 99.9 1.5E-23 3.2E-28 204.4 23.3 289 14-437 139-443 (479)
87 KOG0772 Uncharacterized conser 99.9 9.3E-24 2E-28 208.1 22.1 259 121-438 156-428 (641)
88 KOG1446 Histone H3 (Lys4) meth 99.9 3.9E-22 8.5E-27 186.2 30.9 279 16-378 13-303 (311)
89 KOG0289 mRNA splicing factor [ 99.9 4.8E-23 1E-27 199.0 25.5 278 19-377 221-505 (506)
90 KOG0305 Anaphase promoting com 99.9 6.5E-23 1.4E-27 210.5 27.4 263 35-377 188-460 (484)
91 KOG1446 Histone H3 (Lys4) meth 99.9 5.2E-22 1.1E-26 185.4 30.8 291 248-610 6-303 (311)
92 KOG0308 Conserved WD40 repeat- 99.9 1.7E-23 3.7E-28 212.1 21.8 239 89-379 39-286 (735)
93 KOG0288 WD40 repeat protein Ti 99.9 3.2E-24 6.9E-29 206.0 15.5 279 16-376 174-459 (459)
94 KOG0283 WD40 repeat-containing 99.9 1.7E-23 3.8E-28 219.9 22.4 214 122-379 359-577 (712)
95 KOG1407 WD40 repeat protein [F 99.9 1.5E-22 3.3E-27 182.9 25.2 274 126-493 14-293 (313)
96 KOG0643 Translation initiation 99.9 3.5E-22 7.7E-27 181.1 27.2 295 60-442 6-311 (327)
97 PTZ00421 coronin; Provisional 99.9 3.8E-22 8.3E-27 213.8 32.5 204 127-379 70-291 (493)
98 KOG0301 Phospholipase A2-activ 99.9 6.8E-23 1.5E-27 209.5 25.0 281 56-448 6-288 (745)
99 KOG0300 WD40 repeat-containing 99.9 1.3E-22 2.7E-27 188.0 24.5 239 122-379 138-387 (481)
100 KOG1445 Tumor-specific antigen 99.9 2E-21 4.3E-26 196.0 34.3 224 96-377 54-292 (1012)
101 KOG0299 U3 snoRNP-associated p 99.9 2.5E-22 5.5E-27 195.9 26.7 281 125-474 135-435 (479)
102 KOG0641 WD40 repeat protein [G 99.9 5.9E-21 1.3E-25 168.5 32.6 294 64-438 31-338 (350)
103 KOG0305 Anaphase promoting com 99.9 2.2E-22 4.7E-27 206.6 27.1 266 89-450 189-463 (484)
104 KOG0294 WD40 repeat-containing 99.9 2E-22 4.3E-27 187.1 24.1 236 16-337 42-282 (362)
105 KOG0268 Sof1-like rRNA process 99.9 8.6E-24 1.9E-28 199.6 15.4 277 16-378 65-345 (433)
106 KOG0300 WD40 repeat-containing 99.9 8.2E-23 1.8E-27 189.2 21.4 296 16-379 147-477 (481)
107 KOG0289 mRNA splicing factor [ 99.9 3.7E-22 8E-27 193.0 25.6 278 133-501 220-505 (506)
108 PTZ00420 coronin; Provisional 99.9 2.1E-21 4.6E-26 208.6 33.4 217 97-379 54-294 (568)
109 KOG1036 Mitotic spindle checkp 99.9 1.3E-21 2.9E-26 181.6 27.2 278 254-600 11-294 (323)
110 KOG0647 mRNA export protein (c 99.9 1.1E-21 2.4E-26 181.2 25.9 280 253-599 24-312 (347)
111 KOG1407 WD40 repeat protein [F 99.9 1.3E-21 2.9E-26 176.9 25.6 271 14-370 17-294 (313)
112 PTZ00421 coronin; Provisional 99.9 4.1E-21 9E-26 205.9 34.2 272 16-359 19-314 (493)
113 KOG0640 mRNA cleavage stimulat 99.9 1.6E-22 3.4E-27 186.9 19.6 286 16-377 111-425 (430)
114 KOG1036 Mitotic spindle checkp 99.9 2.2E-21 4.8E-26 180.2 26.4 269 18-368 14-294 (323)
115 KOG2096 WD40 repeat protein [G 99.9 1.1E-21 2.5E-26 182.0 23.6 314 9-376 77-400 (420)
116 KOG0640 mRNA cleavage stimulat 99.9 3.9E-22 8.4E-27 184.3 19.1 297 124-501 104-425 (430)
117 PTZ00420 coronin; Provisional 99.9 1.2E-20 2.7E-25 202.7 32.5 253 43-360 53-318 (568)
118 KOG0641 WD40 repeat protein [G 99.9 9.9E-20 2.1E-24 160.8 31.5 285 18-378 33-349 (350)
119 KOG1332 Vesicle coat complex C 99.9 1.2E-21 2.7E-26 175.3 19.5 262 253-610 8-286 (299)
120 KOG0973 Histone transcription 99.9 9.7E-21 2.1E-25 204.6 28.2 294 17-379 13-356 (942)
121 KOG0639 Transducin-like enhanc 99.9 1.2E-21 2.7E-26 192.3 19.3 278 16-377 418-703 (705)
122 KOG1332 Vesicle coat complex C 99.9 1.7E-21 3.7E-26 174.4 17.7 236 89-378 25-286 (299)
123 KOG0264 Nucleosome remodeling 99.9 3.6E-21 7.9E-26 188.2 21.3 259 16-336 123-404 (422)
124 KOG0646 WD40 repeat protein [G 99.9 6.9E-21 1.5E-25 186.4 22.9 274 44-385 18-315 (476)
125 KOG1963 WD40 repeat protein [G 99.9 2.3E-18 4.9E-23 182.3 42.5 530 89-733 29-594 (792)
126 KOG2096 WD40 repeat protein [G 99.9 4.9E-20 1.1E-24 171.3 25.2 303 125-500 79-400 (420)
127 KOG0646 WD40 repeat protein [G 99.9 9.3E-21 2E-25 185.5 21.1 258 4-317 61-328 (476)
128 KOG0264 Nucleosome remodeling 99.9 1.8E-20 4E-25 183.3 22.5 240 90-379 139-405 (422)
129 KOG0639 Transducin-like enhanc 99.9 9.6E-21 2.1E-25 186.1 20.4 239 64-377 418-662 (705)
130 KOG4283 Transcription-coupled 99.9 1.6E-20 3.4E-25 172.7 20.4 224 64-335 42-275 (397)
131 KOG2445 Nuclear pore complex c 99.9 4.1E-19 9E-24 164.7 27.1 280 253-610 10-318 (361)
132 KOG0269 WD40 repeat-containing 99.9 1.8E-20 3.8E-25 194.3 19.7 286 17-377 39-339 (839)
133 KOG0321 WD40 repeat-containing 99.9 9.7E-20 2.1E-24 184.7 23.8 306 182-613 53-394 (720)
134 KOG1963 WD40 repeat protein [G 99.9 7.5E-18 1.6E-22 178.4 38.0 478 3-611 36-539 (792)
135 KOG2055 WD40 repeat protein [G 99.8 2.7E-19 5.9E-24 174.8 24.1 289 132-502 213-512 (514)
136 KOG4283 Transcription-coupled 99.8 5.7E-19 1.2E-23 162.5 23.6 298 191-609 54-364 (397)
137 KOG0269 WD40 repeat-containing 99.8 4.7E-20 1E-24 191.2 18.2 287 135-502 42-340 (839)
138 KOG2445 Nuclear pore complex c 99.8 1.3E-18 2.8E-23 161.4 24.3 262 66-378 14-318 (361)
139 KOG1445 Tumor-specific antigen 99.8 2.4E-18 5.3E-23 173.9 28.0 209 258-504 629-846 (1012)
140 KOG2055 WD40 repeat protein [G 99.8 1.2E-18 2.7E-23 170.3 24.5 291 256-670 213-512 (514)
141 KOG0321 WD40 repeat-containing 99.8 5.5E-19 1.2E-23 179.3 21.3 326 260-672 53-393 (720)
142 KOG1009 Chromatin assembly com 99.8 3.8E-18 8.2E-23 164.4 25.9 350 176-611 11-373 (434)
143 KOG1034 Transcriptional repres 99.8 2.3E-18 4.9E-23 161.3 22.5 308 58-445 31-380 (385)
144 KOG0302 Ribosome Assembly prot 99.8 1.1E-18 2.3E-23 166.3 20.1 251 16-331 150-434 (440)
145 KOG4378 Nuclear protein COP1 [ 99.8 1.4E-18 3E-23 171.0 21.3 293 36-431 4-305 (673)
146 KOG1274 WD40 repeat protein [G 99.8 8.5E-18 1.8E-22 178.1 28.4 235 254-611 11-263 (933)
147 KOG0267 Microtubule severing p 99.8 3.6E-20 7.8E-25 190.4 9.0 233 128-440 24-259 (825)
148 KOG0302 Ribosome Assembly prot 99.8 3.2E-18 6.9E-23 163.1 20.9 213 124-379 143-379 (440)
149 KOG1034 Transcriptional repres 99.8 7E-18 1.5E-22 158.0 22.3 326 16-377 37-382 (385)
150 KOG0650 WD40 repeat nucleolar 99.8 5.2E-18 1.1E-22 170.9 22.8 293 16-375 399-732 (733)
151 KOG1538 Uncharacterized conser 99.8 4.4E-17 9.4E-22 165.9 29.4 269 67-445 14-290 (1081)
152 KOG0270 WD40 repeat-containing 99.8 8.9E-18 1.9E-22 163.7 23.2 243 90-379 194-450 (463)
153 KOG0267 Microtubule severing p 99.8 7.5E-20 1.6E-24 188.1 8.5 215 90-370 42-260 (825)
154 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 6.8E-17 1.5E-21 167.9 30.8 270 1-358 8-300 (300)
155 KOG1273 WD40 repeat protein [G 99.8 3.4E-17 7.3E-22 152.4 24.8 288 20-378 26-322 (405)
156 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.9E-16 4.1E-21 164.6 33.9 266 37-379 3-280 (300)
157 KOG0650 WD40 repeat nucleolar 99.8 4.2E-17 9E-22 164.5 27.1 274 123-443 391-675 (733)
158 KOG1274 WD40 repeat protein [G 99.8 4.5E-17 9.8E-22 172.7 28.7 244 64-379 12-263 (933)
159 KOG1538 Uncharacterized conser 99.8 1.2E-16 2.7E-21 162.7 29.5 271 19-377 14-292 (1081)
160 KOG1524 WD40 repeat-containing 99.8 4.9E-16 1.1E-20 154.7 32.3 273 15-377 12-285 (737)
161 KOG4328 WD40 protein [Function 99.8 5.5E-17 1.2E-21 158.7 24.9 264 49-379 171-451 (498)
162 KOG4328 WD40 protein [Function 99.8 3.9E-17 8.5E-22 159.7 23.5 295 16-378 185-495 (498)
163 KOG4378 Nuclear protein COP1 [ 99.8 2.4E-17 5.3E-22 162.3 20.8 280 3-365 11-309 (673)
164 KOG1273 WD40 repeat protein [G 99.8 2.1E-16 4.6E-21 147.2 23.4 293 135-503 26-323 (405)
165 KOG1517 Guanine nucleotide bin 99.7 2.2E-16 4.7E-21 169.3 22.7 307 5-379 1051-1382(1387)
166 KOG0642 Cell-cycle nuclear pro 99.7 5.9E-17 1.3E-21 162.9 17.4 264 247-611 285-562 (577)
167 KOG2919 Guanine nucleotide-bin 99.7 6.9E-16 1.5E-20 144.4 23.0 296 67-443 51-364 (406)
168 KOG0303 Actin-binding protein 99.7 4.9E-16 1.1E-20 149.2 22.5 259 54-380 16-296 (472)
169 KOG1007 WD repeat protein TSSC 99.7 4.1E-16 8.9E-21 143.6 20.8 270 43-377 39-360 (370)
170 KOG1007 WD repeat protein TSSC 99.7 3.4E-16 7.3E-21 144.1 19.0 260 16-336 62-361 (370)
171 COG2319 FOG: WD40 repeat [Gene 99.7 2E-13 4.4E-18 149.9 45.3 371 127-611 60-443 (466)
172 KOG0307 Vesicle coat complex C 99.7 4.5E-17 9.7E-22 177.3 13.5 289 21-379 10-328 (1049)
173 KOG0270 WD40 repeat-containing 99.7 6.6E-16 1.4E-20 150.8 19.7 200 134-379 175-405 (463)
174 KOG1188 WD40 repeat protein [G 99.7 2.2E-16 4.9E-21 149.0 15.7 231 89-377 42-345 (376)
175 KOG2919 Guanine nucleotide-bin 99.7 1.7E-15 3.6E-20 141.9 21.1 278 21-369 53-361 (406)
176 KOG0290 Conserved WD40 repeat- 99.7 7.8E-16 1.7E-20 141.9 18.5 246 16-326 95-356 (364)
177 KOG1188 WD40 repeat protein [G 99.7 9.1E-16 2E-20 144.9 19.3 286 193-554 40-347 (376)
178 KOG0290 Conserved WD40 repeat- 99.7 7.5E-15 1.6E-19 135.5 24.7 259 55-379 36-319 (364)
179 COG2319 FOG: WD40 repeat [Gene 99.7 1E-12 2.2E-17 144.3 43.5 286 14-379 62-360 (466)
180 KOG0649 WD40 repeat protein [G 99.7 1E-13 2.3E-18 124.7 25.9 274 20-375 13-313 (325)
181 KOG0303 Actin-binding protein 99.7 4.7E-15 1E-19 142.5 18.3 211 252-505 77-297 (472)
182 KOG0642 Cell-cycle nuclear pro 99.7 3E-15 6.4E-20 150.8 16.4 227 122-379 284-562 (577)
183 KOG0322 G-protein beta subunit 99.6 9.1E-15 2E-19 133.2 17.9 298 302-669 8-322 (323)
184 KOG0322 G-protein beta subunit 99.6 4E-15 8.6E-20 135.5 15.6 297 15-377 12-322 (323)
185 KOG4227 WD40 repeat protein [G 99.6 2.5E-14 5.5E-19 137.0 21.7 322 250-610 50-387 (609)
186 KOG4227 WD40 repeat protein [G 99.6 2.1E-14 4.6E-19 137.5 20.9 209 124-378 48-274 (609)
187 KOG2110 Uncharacterized conser 99.6 1.8E-12 3.8E-17 124.4 30.7 274 19-378 7-330 (391)
188 KOG1009 Chromatin assembly com 99.6 1.6E-13 3.4E-18 133.0 23.4 264 61-380 9-374 (434)
189 KOG1524 WD40 repeat-containing 99.6 7.9E-13 1.7E-17 132.2 28.2 265 130-449 12-287 (737)
190 KOG1587 Cytoplasmic dynein int 99.6 3.2E-13 7E-18 143.9 26.3 278 44-379 222-517 (555)
191 KOG1334 WD40 repeat protein [G 99.6 2.6E-14 5.6E-19 141.3 16.2 216 121-377 131-365 (559)
192 KOG0644 Uncharacterized conser 99.6 3E-15 6.5E-20 156.8 10.1 270 16-377 189-467 (1113)
193 KOG0649 WD40 repeat protein [G 99.6 2.3E-12 4.9E-17 116.2 26.9 234 89-379 24-275 (325)
194 KOG0307 Vesicle coat complex C 99.6 6.2E-15 1.3E-19 160.9 12.4 245 20-336 67-327 (1049)
195 KOG1523 Actin-related protein 99.6 2.1E-13 4.5E-18 128.1 20.6 224 16-289 9-239 (361)
196 KOG1272 WD40-repeat-containing 99.6 4.2E-15 9E-20 145.9 9.6 263 22-371 134-402 (545)
197 KOG0644 Uncharacterized conser 99.6 4.3E-15 9.4E-20 155.6 10.0 118 246-378 180-300 (1113)
198 KOG2110 Uncharacterized conser 99.6 1.2E-12 2.6E-17 125.5 25.6 243 6-288 70-332 (391)
199 KOG1310 WD40 repeat protein [G 99.6 1.8E-13 4E-18 137.0 20.9 172 16-211 49-231 (758)
200 KOG1517 Guanine nucleotide bin 99.6 6.5E-13 1.4E-17 143.2 24.2 304 134-503 1066-1382(1387)
201 KOG1587 Cytoplasmic dynein int 99.6 1.6E-12 3.6E-17 138.6 26.8 272 278-614 222-520 (555)
202 KOG1240 Protein kinase contain 99.5 2.3E-12 5.1E-17 141.3 25.6 325 302-668 1042-1431(1431)
203 PRK11028 6-phosphogluconolacto 99.5 1.9E-11 4.1E-16 128.1 31.1 273 37-378 5-304 (330)
204 KOG1310 WD40 repeat protein [G 99.5 2.9E-13 6.2E-18 135.7 15.8 186 122-335 40-230 (758)
205 KOG0974 WD-repeat protein WDR6 99.5 8.6E-11 1.9E-15 127.8 35.7 152 191-388 97-256 (967)
206 PRK11028 6-phosphogluconolacto 99.5 5.3E-11 1.2E-15 124.7 32.5 259 2-335 10-303 (330)
207 KOG2111 Uncharacterized conser 99.5 2.1E-11 4.6E-16 114.8 25.7 235 4-286 75-322 (346)
208 KOG1523 Actin-related protein 99.5 1.7E-11 3.6E-16 115.5 23.7 213 181-445 13-233 (361)
209 KOG1334 WD40 repeat protein [G 99.5 5E-13 1.1E-17 132.4 14.4 312 16-379 141-467 (559)
210 KOG1240 Protein kinase contain 99.5 1.4E-11 3E-16 135.5 26.8 269 49-381 1034-1337(1431)
211 KOG1912 WD40 repeat protein [G 99.5 1.2E-10 2.6E-15 121.9 31.2 610 20-767 18-699 (1062)
212 KOG0771 Prolactin regulatory e 99.5 6.1E-13 1.3E-17 130.0 13.1 178 190-439 153-344 (398)
213 KOG1912 WD40 repeat protein [G 99.4 1.2E-10 2.7E-15 121.9 28.8 548 16-675 54-725 (1062)
214 KOG2041 WD40 repeat protein [G 99.4 6.7E-10 1.4E-14 115.3 33.4 470 62-612 11-534 (1189)
215 KOG4497 Uncharacterized conser 99.4 2.1E-10 4.5E-15 108.4 26.2 125 138-317 14-142 (447)
216 KOG2394 WD40 protein DMR-N9 [G 99.4 2.6E-11 5.7E-16 121.8 21.1 241 34-357 134-383 (636)
217 PRK01742 tolB translocation pr 99.4 1.9E-11 4E-16 132.2 21.2 207 97-377 184-400 (429)
218 KOG2111 Uncharacterized conser 99.4 9.3E-10 2E-14 103.9 29.0 232 20-335 8-255 (346)
219 KOG1409 Uncharacterized conser 99.4 5E-11 1.1E-15 113.3 20.0 241 18-336 25-270 (404)
220 KOG2139 WD40 repeat protein [G 99.4 4E-10 8.6E-15 108.0 25.0 207 19-286 100-309 (445)
221 KOG3881 Uncharacterized conser 99.3 1.1E-10 2.4E-15 113.1 19.8 267 19-359 57-342 (412)
222 KOG1272 WD40-repeat-containing 99.3 6.5E-12 1.4E-16 123.9 10.8 190 135-379 132-324 (545)
223 KOG0771 Prolactin regulatory e 99.3 3.2E-11 6.9E-16 118.2 14.9 197 21-287 148-355 (398)
224 KOG3881 Uncharacterized conser 99.3 1.3E-10 2.8E-15 112.6 18.3 200 35-290 116-324 (412)
225 KOG2321 WD40 repeat protein [G 99.3 7.2E-10 1.6E-14 112.5 23.1 279 16-377 50-342 (703)
226 PRK01742 tolB translocation pr 99.3 2.1E-10 4.6E-15 124.0 20.6 231 44-359 184-426 (429)
227 KOG4497 Uncharacterized conser 99.3 3E-09 6.6E-14 100.6 25.0 343 22-441 13-424 (447)
228 PF02239 Cytochrom_D1: Cytochr 99.3 2.5E-08 5.4E-13 104.1 34.8 190 147-379 5-203 (369)
229 KOG2139 WD40 repeat protein [G 99.3 4.1E-09 8.9E-14 101.2 25.4 262 134-442 100-368 (445)
230 KOG2394 WD40 protein DMR-N9 [G 99.3 1.6E-10 3.4E-15 116.3 16.3 197 20-266 171-384 (636)
231 PF02239 Cytochrom_D1: Cytochr 99.2 4E-08 8.8E-13 102.5 32.5 272 35-379 5-303 (369)
232 KOG1354 Serine/threonine prote 99.2 2.6E-09 5.6E-14 101.8 19.8 272 18-336 26-359 (433)
233 PF04762 IKI3: IKI3 family; I 99.2 2.9E-06 6.3E-11 98.8 48.7 293 18-379 76-457 (928)
234 PRK03629 tolB translocation pr 99.2 4.4E-09 9.6E-14 113.4 23.9 200 127-383 193-411 (429)
235 KOG0280 Uncharacterized conser 99.2 6.8E-09 1.5E-13 97.1 20.6 269 44-376 46-331 (339)
236 KOG1409 Uncharacterized conser 99.2 3.1E-09 6.8E-14 101.4 18.5 219 122-380 14-272 (404)
237 KOG2315 Predicted translation 99.1 2.1E-08 4.6E-13 102.2 24.0 296 3-383 54-395 (566)
238 KOG1354 Serine/threonine prote 99.1 2.2E-08 4.7E-13 95.7 21.1 239 132-378 25-301 (433)
239 PF08662 eIF2A: Eukaryotic tra 99.0 1.8E-08 3.8E-13 95.2 18.8 112 132-288 59-181 (194)
240 PRK03629 tolB translocation pr 99.0 7.5E-08 1.6E-12 103.9 25.9 234 44-358 179-427 (429)
241 PRK04922 tolB translocation pr 99.0 2.3E-08 5.1E-13 108.4 21.7 199 126-379 197-412 (433)
242 KOG0309 Conserved WD40 repeat- 99.0 1.4E-09 3.1E-14 113.4 11.5 287 16-379 23-340 (1081)
243 PRK05137 tolB translocation pr 99.0 4.1E-08 9E-13 106.7 23.6 200 125-379 194-413 (435)
244 PF08662 eIF2A: Eukaryotic tra 99.0 3E-08 6.4E-13 93.7 19.3 113 255-383 58-184 (194)
245 KOG2041 WD40 repeat protein [G 99.0 6.1E-07 1.3E-11 93.9 29.7 162 190-380 23-188 (1189)
246 PRK02889 tolB translocation pr 99.0 7.1E-08 1.5E-12 104.3 24.4 194 126-370 189-392 (427)
247 PF04762 IKI3: IKI3 family; I 99.0 5.9E-05 1.3E-09 88.1 48.7 359 131-611 74-457 (928)
248 PRK04922 tolB translocation pr 99.0 7.3E-08 1.6E-12 104.6 22.7 232 44-358 184-432 (433)
249 PF10282 Lactonase: Lactonase, 99.0 1.2E-05 2.5E-10 84.4 38.4 289 278-611 13-323 (345)
250 KOG4547 WD40 repeat-containing 99.0 7.3E-08 1.6E-12 99.2 20.6 143 146-336 69-220 (541)
251 KOG0280 Uncharacterized conser 99.0 1.7E-07 3.8E-12 87.8 20.7 112 259-379 124-242 (339)
252 PRK02889 tolB translocation pr 98.9 1.9E-07 4E-12 101.0 23.5 235 44-358 176-424 (427)
253 TIGR03300 assembly_YfgL outer 98.9 1.4E-06 3E-11 93.3 29.5 259 35-379 66-339 (377)
254 KOG2321 WD40 repeat protein [G 98.9 5.1E-07 1.1E-11 92.4 23.8 288 123-505 43-346 (703)
255 KOG4547 WD40 repeat-containing 98.9 1.5E-07 3.2E-12 97.0 20.2 188 146-379 4-221 (541)
256 COG4946 Uncharacterized protei 98.9 8E-06 1.7E-10 81.9 31.1 221 90-368 280-508 (668)
257 COG2706 3-carboxymuconate cycl 98.9 2E-05 4.3E-10 77.1 31.9 265 96-441 15-312 (346)
258 KOG1064 RAVE (regulator of V-A 98.8 2.2E-08 4.7E-13 114.8 13.2 183 88-344 2221-2407(2439)
259 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.7E-05 3.7E-10 80.9 32.7 268 44-379 27-331 (352)
260 KOG1064 RAVE (regulator of V-A 98.8 1.8E-08 3.9E-13 115.5 11.6 177 34-290 2220-2402(2439)
261 PRK05137 tolB translocation pr 98.8 1.1E-06 2.3E-11 95.7 25.0 231 44-358 182-432 (435)
262 TIGR03300 assembly_YfgL outer 98.8 2.1E-06 4.4E-11 91.9 26.8 261 35-375 106-376 (377)
263 KOG2314 Translation initiation 98.8 2.7E-06 5.9E-11 86.8 24.7 313 260-672 214-575 (698)
264 TIGR02800 propeller_TolB tol-p 98.8 8.1E-07 1.7E-11 96.8 23.0 190 126-370 183-386 (417)
265 COG2706 3-carboxymuconate cycl 98.8 3.3E-05 7.2E-10 75.6 30.0 169 530-725 151-324 (346)
266 KOG4714 Nucleoporin [Nuclear s 98.8 1.2E-07 2.5E-12 87.4 12.5 74 258-340 181-258 (319)
267 KOG2315 Predicted translation 98.8 1E-05 2.2E-10 83.2 27.6 280 19-379 36-345 (566)
268 KOG3914 WD repeat protein WDR4 98.8 8.8E-08 1.9E-12 94.0 12.1 160 135-345 65-233 (390)
269 COG5354 Uncharacterized protei 98.7 8.7E-06 1.9E-10 82.6 26.3 286 6-380 55-397 (561)
270 PF10282 Lactonase: Lactonase, 98.7 0.00019 4.1E-09 75.3 38.2 282 4-356 13-345 (345)
271 KOG0309 Conserved WD40 repeat- 98.7 2.7E-08 5.7E-13 104.2 8.3 229 4-288 91-341 (1081)
272 KOG2314 Translation initiation 98.7 4.6E-06 1E-10 85.2 22.7 283 19-383 251-578 (698)
273 PRK01029 tolB translocation pr 98.7 6.4E-06 1.4E-10 88.6 25.0 243 44-359 165-425 (428)
274 KOG4190 Uncharacterized conser 98.6 1.9E-07 4.2E-12 94.5 11.3 299 246-606 725-1032(1034)
275 PRK04792 tolB translocation pr 98.6 4.1E-06 8.9E-11 90.9 22.5 199 127-380 212-427 (448)
276 PF00400 WD40: WD domain, G-be 98.6 1.4E-07 3.1E-12 62.8 7.0 38 247-284 2-39 (39)
277 TIGR02800 propeller_TolB tol-p 98.6 8.6E-06 1.9E-10 88.7 24.7 222 44-347 170-408 (417)
278 PRK00178 tolB translocation pr 98.6 7.5E-06 1.6E-10 89.3 23.9 199 126-379 192-407 (430)
279 TIGR02658 TTQ_MADH_Hv methylam 98.6 0.00048 1E-08 70.5 32.9 271 157-505 27-333 (352)
280 KOG4190 Uncharacterized conser 98.5 2.8E-07 6.1E-12 93.4 9.1 230 89-377 749-987 (1034)
281 PRK00178 tolB translocation pr 98.5 3E-05 6.6E-10 84.5 24.7 231 45-358 180-427 (430)
282 KOG4714 Nucleoporin [Nuclear s 98.5 2.4E-06 5.3E-11 78.9 13.0 111 192-334 191-316 (319)
283 KOG3914 WD repeat protein WDR4 98.5 2.9E-06 6.3E-11 83.6 14.2 157 482-675 72-228 (390)
284 PRK11138 outer membrane biogen 98.5 0.00015 3.2E-09 77.9 29.0 274 35-379 70-354 (394)
285 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00074 1.6E-08 63.0 28.3 139 269-450 24-167 (354)
286 COG5354 Uncharacterized protei 98.5 8.2E-05 1.8E-09 75.7 24.2 271 18-379 33-349 (561)
287 PRK01029 tolB translocation pr 98.5 3.6E-05 7.9E-10 82.8 23.7 205 127-379 179-404 (428)
288 COG4946 Uncharacterized protei 98.5 0.00011 2.3E-09 74.1 24.2 191 34-289 277-480 (668)
289 KOG1275 PAB-dependent poly(A) 98.4 4.5E-06 9.8E-11 90.4 15.2 180 146-377 146-341 (1118)
290 KOG4532 WD40-like repeat conta 98.4 5.6E-05 1.2E-09 70.4 19.7 248 21-335 71-330 (344)
291 PF00400 WD40: WD domain, G-be 98.4 8.8E-07 1.9E-11 58.9 6.0 38 123-163 2-39 (39)
292 PF15492 Nbas_N: Neuroblastoma 98.4 0.0005 1.1E-08 65.5 26.0 230 90-379 11-260 (282)
293 PF15492 Nbas_N: Neuroblastoma 98.4 0.00011 2.4E-09 69.9 21.1 201 21-290 47-263 (282)
294 COG5170 CDC55 Serine/threonine 98.4 5E-06 1.1E-10 78.7 12.1 237 16-290 25-313 (460)
295 PLN02919 haloacid dehalogenase 98.4 0.00025 5.4E-09 84.7 29.1 221 134-380 625-890 (1057)
296 COG5170 CDC55 Serine/threonine 98.3 8.1E-06 1.8E-10 77.3 12.9 245 132-385 26-318 (460)
297 KOG4532 WD40-like repeat conta 98.3 8.5E-05 1.8E-09 69.3 19.0 232 89-377 85-330 (344)
298 KOG2695 WD40 repeat protein [G 98.3 2.1E-06 4.6E-11 82.5 8.9 165 151-357 228-401 (425)
299 KOG3617 WD40 and TPR repeat-co 98.3 7E-05 1.5E-09 80.6 20.3 107 22-165 20-131 (1416)
300 PRK04792 tolB translocation pr 98.3 0.00021 4.6E-09 77.6 24.8 231 45-358 199-446 (448)
301 PLN02919 haloacid dehalogenase 98.3 0.00062 1.3E-08 81.4 29.9 272 21-337 571-889 (1057)
302 KOG2695 WD40 repeat protein [G 98.3 3.9E-06 8.4E-11 80.7 9.1 167 91-317 228-401 (425)
303 PF13360 PQQ_2: PQQ-like domai 98.1 0.0043 9.4E-08 61.5 27.9 215 43-340 2-235 (238)
304 KOG1832 HIV-1 Vpr-binding prot 98.1 1.8E-06 4E-11 92.7 3.5 193 16-290 1100-1295(1516)
305 PRK11138 outer membrane biogen 98.1 0.0011 2.4E-08 71.2 24.7 263 36-377 122-393 (394)
306 PF13360 PQQ_2: PQQ-like domai 98.1 0.00099 2.1E-08 66.1 22.7 210 3-290 2-234 (238)
307 KOG3621 WD40 repeat-containing 98.0 0.0012 2.6E-08 70.5 21.8 162 133-335 34-196 (726)
308 PF08450 SGL: SMP-30/Gluconola 98.0 0.025 5.5E-07 56.2 30.9 184 135-366 42-243 (246)
309 PF07433 DUF1513: Protein of u 97.9 0.0059 1.3E-07 60.3 23.8 199 135-379 7-248 (305)
310 PF08450 SGL: SMP-30/Gluconola 97.9 0.015 3.4E-07 57.8 27.6 191 137-380 4-215 (246)
311 PF03178 CPSF_A: CPSF A subuni 97.9 0.013 2.8E-07 60.9 27.7 185 157-379 2-203 (321)
312 PF07433 DUF1513: Protein of u 97.9 0.0083 1.8E-07 59.3 24.1 208 20-290 7-251 (305)
313 KOG0882 Cyclophilin-related pe 97.9 0.00025 5.4E-09 71.1 13.1 273 304-615 5-310 (558)
314 PF08596 Lgl_C: Lethal giant l 97.8 0.014 3.1E-07 61.4 26.3 287 19-377 3-334 (395)
315 PF11768 DUF3312: Protein of u 97.8 0.042 9.1E-07 58.3 29.0 86 570-675 249-334 (545)
316 KOG0882 Cyclophilin-related pe 97.8 0.00037 8.1E-09 69.9 12.7 240 89-381 22-308 (558)
317 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.036 7.9E-07 52.1 28.6 69 133-211 53-123 (354)
318 KOG2066 Vacuolar assembly/sort 97.8 0.0013 2.7E-08 71.3 17.4 184 132-378 39-233 (846)
319 KOG1920 IkappaB kinase complex 97.7 0.0086 1.9E-07 68.3 23.3 217 18-289 69-325 (1265)
320 PF11768 DUF3312: Protein of u 97.7 0.1 2.3E-06 55.4 30.2 123 247-379 197-330 (545)
321 PF03178 CPSF_A: CPSF A subuni 97.7 0.05 1.1E-06 56.6 28.3 190 44-287 2-203 (321)
322 KOG1275 PAB-dependent poly(A) 97.7 0.0009 2E-08 73.3 14.8 187 34-286 147-342 (1118)
323 KOG2066 Vacuolar assembly/sort 97.7 0.0019 4E-08 70.1 17.0 132 192-380 48-189 (846)
324 KOG2114 Vacuolar assembly/sort 97.6 0.011 2.4E-07 64.8 22.4 202 134-379 27-244 (933)
325 PRK04043 tolB translocation pr 97.6 0.013 2.9E-07 62.8 22.9 150 19-211 189-357 (419)
326 KOG2114 Vacuolar assembly/sort 97.6 0.021 4.6E-07 62.8 23.5 190 190-443 32-238 (933)
327 KOG3617 WD40 and TPR repeat-co 97.5 0.004 8.6E-08 67.7 16.9 110 136-287 19-132 (1416)
328 PRK02888 nitrous-oxide reducta 97.5 0.031 6.7E-07 60.8 23.1 239 35-336 141-404 (635)
329 PRK04043 tolB translocation pr 97.5 0.046 9.9E-07 58.7 24.6 189 134-379 189-401 (419)
330 KOG1645 RING-finger-containing 97.4 0.0077 1.7E-07 60.1 15.8 86 122-214 183-269 (463)
331 PF06977 SdiA-regulated: SdiA- 97.4 0.11 2.5E-06 50.6 24.0 206 125-366 14-239 (248)
332 PF04053 Coatomer_WDAD: Coatom 97.4 0.042 9E-07 58.8 22.3 225 68-379 35-263 (443)
333 KOG1645 RING-finger-containing 97.3 0.024 5.3E-07 56.7 18.5 76 302-379 187-267 (463)
334 PF04841 Vps16_N: Vps16, N-ter 97.3 0.18 3.9E-06 54.0 27.0 48 45-105 62-109 (410)
335 KOG3621 WD40 repeat-containing 97.3 0.035 7.6E-07 59.8 20.8 140 312-475 39-181 (726)
336 PRK02888 nitrous-oxide reducta 97.3 0.16 3.4E-06 55.6 25.9 99 267-379 287-405 (635)
337 smart00320 WD40 WD40 repeats. 97.3 0.00075 1.6E-08 44.0 5.9 38 247-284 3-40 (40)
338 cd00216 PQQ_DH Dehydrogenases 97.3 0.45 9.6E-06 52.6 29.9 97 270-379 303-425 (488)
339 KOG1832 HIV-1 Vpr-binding prot 97.2 0.00039 8.4E-09 75.5 4.6 198 121-379 1090-1292(1516)
340 KOG1897 Damage-specific DNA bi 97.2 0.67 1.5E-05 52.5 53.2 107 533-672 838-944 (1096)
341 PF08553 VID27: VID27 cytoplas 97.1 0.046 1E-06 61.9 20.1 153 35-211 493-647 (794)
342 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.052 1.1E-06 44.6 14.9 69 135-211 2-71 (111)
343 PF08596 Lgl_C: Lethal giant l 97.1 0.15 3.2E-06 53.9 22.6 176 17-211 86-290 (395)
344 KOG1897 Damage-specific DNA bi 97.0 0.97 2.1E-05 51.3 42.0 77 131-211 529-613 (1096)
345 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.04 8.7E-07 45.2 12.9 100 259-374 2-110 (111)
346 KOG1920 IkappaB kinase complex 96.9 0.3 6.5E-06 56.4 23.6 249 132-456 68-327 (1265)
347 PF08553 VID27: VID27 cytoplas 96.8 0.17 3.7E-06 57.5 21.5 125 245-377 513-646 (794)
348 smart00320 WD40 WD40 repeats. 96.8 0.0025 5.4E-08 41.3 4.7 38 123-163 3-40 (40)
349 PF06433 Me-amine-dh_H: Methyl 96.7 0.78 1.7E-05 46.4 26.8 272 158-505 18-323 (342)
350 cd00216 PQQ_DH Dehydrogenases 96.7 0.81 1.8E-05 50.6 25.6 33 314-346 402-435 (488)
351 PF04053 Coatomer_WDAD: Coatom 96.6 0.52 1.1E-05 50.6 22.6 224 19-336 34-262 (443)
352 COG3204 Uncharacterized protei 96.5 0.54 1.2E-05 45.8 19.4 190 128-348 81-275 (316)
353 PF06433 Me-amine-dh_H: Methyl 96.4 1.3 2.9E-05 44.7 27.1 275 5-347 18-332 (342)
354 KOG1008 Uncharacterized conser 96.2 0.0017 3.6E-08 68.5 1.1 203 134-379 58-276 (783)
355 PF12894 Apc4_WD40: Anaphase-p 96.2 0.012 2.7E-07 40.1 4.8 32 579-610 10-41 (47)
356 PF00780 CNH: CNH domain; Int 96.2 1.7 3.8E-05 43.9 26.8 251 35-346 7-266 (275)
357 KOG4640 Anaphase-promoting com 95.8 0.036 7.9E-07 58.9 8.4 67 190-290 29-96 (665)
358 PF06977 SdiA-regulated: SdiA- 95.8 2.2 4.7E-05 41.8 25.4 166 18-211 22-201 (248)
359 PF00930 DPPIV_N: Dipeptidyl p 95.7 3.4 7.4E-05 43.5 25.0 101 265-377 1-130 (353)
360 PF05096 Glu_cyclase_2: Glutam 95.5 2.6 5.7E-05 41.1 22.1 131 44-211 68-203 (264)
361 PF05694 SBP56: 56kDa selenium 95.5 3.8 8.3E-05 42.8 25.8 126 133-290 181-346 (461)
362 KOG2395 Protein involved in va 95.4 0.63 1.4E-05 48.9 15.2 122 245-377 365-499 (644)
363 KOG2079 Vacuolar assembly/sort 95.3 0.15 3.3E-06 57.8 11.7 99 90-211 102-203 (1206)
364 PF00780 CNH: CNH domain; Int 95.3 3.8 8.2E-05 41.4 25.9 152 430-611 7-166 (275)
365 COG3386 Gluconolactonase [Carb 95.0 3.3 7.1E-05 42.2 19.3 113 249-367 155-274 (307)
366 KOG1008 Uncharacterized conser 94.9 0.025 5.5E-07 60.0 4.0 115 257-379 57-185 (783)
367 PF04841 Vps16_N: Vps16, N-ter 94.8 6.9 0.00015 42.1 25.2 50 279-339 62-112 (410)
368 KOG2079 Vacuolar assembly/sort 94.8 0.14 3E-06 58.2 9.5 103 536-669 100-202 (1206)
369 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.8 8.5 0.00018 42.9 25.5 31 317-347 471-502 (527)
370 PF12894 Apc4_WD40: Anaphase-p 94.7 0.11 2.3E-06 35.5 5.3 33 132-168 11-43 (47)
371 PRK13616 lipoprotein LpqB; Pro 94.6 3.2 6.9E-05 46.7 19.7 109 255-373 446-563 (591)
372 PF10168 Nup88: Nuclear pore c 94.5 7 0.00015 44.9 22.3 122 36-168 34-182 (717)
373 PHA02713 hypothetical protein; 94.5 2.7 5.9E-05 47.3 18.9 61 315-378 461-533 (557)
374 KOG2444 WD40 repeat protein [G 94.4 0.11 2.4E-06 48.3 6.4 106 146-287 69-178 (238)
375 PF14727 PHTB1_N: PTHB1 N-term 94.3 8.7 0.00019 40.9 35.6 156 191-378 35-204 (418)
376 PF05096 Glu_cyclase_2: Glutam 94.3 5.9 0.00013 38.8 23.4 184 133-367 45-249 (264)
377 KOG4640 Anaphase-promoting com 94.2 0.23 5E-06 53.1 8.9 72 133-211 21-92 (665)
378 PF15390 DUF4613: Domain of un 93.9 11 0.00024 40.8 27.3 165 16-211 18-186 (671)
379 KOG2395 Protein involved in va 93.9 0.64 1.4E-05 48.8 11.3 144 89-286 346-500 (644)
380 PHA02713 hypothetical protein; 93.7 4.7 0.0001 45.4 18.9 61 267-335 463-532 (557)
381 PF08728 CRT10: CRT10; InterP 93.3 1.6 3.6E-05 48.9 14.0 125 533-669 112-245 (717)
382 KOG2280 Vacuolar assembly/sort 93.1 5.2 0.00011 44.4 16.8 52 43-107 63-114 (829)
383 COG3490 Uncharacterized protei 92.8 10 0.00022 37.0 18.7 100 22-153 72-179 (366)
384 KOG2444 WD40 repeat protein [G 92.8 0.4 8.6E-06 44.8 7.0 102 268-378 70-177 (238)
385 PF15390 DUF4613: Domain of un 92.4 11 0.00024 40.8 17.6 121 133-288 57-188 (671)
386 KOG4441 Proteins containing BT 92.2 20 0.00042 40.5 20.9 185 146-378 284-499 (571)
387 KOG1916 Nuclear protein, conta 91.9 0.058 1.3E-06 59.7 0.7 95 44-165 153-265 (1283)
388 PF05694 SBP56: 56kDa selenium 91.7 20 0.00043 37.8 27.2 242 44-335 37-341 (461)
389 PF02897 Peptidase_S9_N: Proly 91.4 24 0.00052 38.2 29.2 199 259-502 126-357 (414)
390 PF00930 DPPIV_N: Dipeptidyl p 91.3 22 0.00047 37.5 27.3 48 5-58 24-77 (353)
391 PF10313 DUF2415: Uncharacteri 91.3 0.72 1.6E-05 30.5 4.9 31 18-53 1-34 (43)
392 PF12234 Rav1p_C: RAVE protein 90.8 5.1 0.00011 44.7 14.1 111 35-164 41-155 (631)
393 KOG4441 Proteins containing BT 90.5 11 0.00023 42.5 16.7 69 135-211 325-404 (571)
394 KOG1898 Splicing factor 3b, su 90.5 41 0.00089 39.4 39.4 141 438-612 910-1050(1205)
395 KOG4499 Ca2+-binding protein R 90.5 8.1 0.00017 36.5 12.8 46 146-192 222-267 (310)
396 COG0823 TolB Periplasmic compo 90.3 29 0.00063 37.4 19.0 91 97-211 218-312 (425)
397 PF07995 GSDH: Glucose / Sorbo 90.2 26 0.00056 36.5 30.0 61 534-605 270-330 (331)
398 KOG3630 Nuclear pore complex, 89.8 3.6 7.8E-05 47.7 12.0 56 255-318 197-253 (1405)
399 PF14870 PSII_BNR: Photosynthe 89.6 26 0.00056 35.6 31.4 286 7-375 6-301 (302)
400 COG3490 Uncharacterized protei 89.5 16 0.00034 35.8 14.2 47 24-77 120-173 (366)
401 PRK13684 Ycf48-like protein; P 89.3 24 0.00052 36.7 17.3 158 16-211 171-331 (334)
402 COG3823 Glutamine cyclotransfe 89.3 15 0.00032 34.2 13.2 97 43-170 67-163 (262)
403 PF10168 Nup88: Nuclear pore c 88.8 9.2 0.0002 44.0 14.6 91 580-671 84-180 (717)
404 PF12234 Rav1p_C: RAVE protein 88.5 13 0.00027 41.8 14.8 111 535-668 41-154 (631)
405 COG3391 Uncharacterized conser 87.8 41 0.0009 35.8 22.2 196 22-290 78-287 (381)
406 PF10313 DUF2415: Uncharacteri 87.3 2.4 5.3E-05 28.1 5.2 33 133-167 1-35 (43)
407 KOG1898 Splicing factor 3b, su 86.6 73 0.0016 37.4 31.3 140 492-672 910-1050(1205)
408 KOG3630 Nuclear pore complex, 86.6 7.4 0.00016 45.4 11.8 92 538-659 171-262 (1405)
409 PF08728 CRT10: CRT10; InterP 86.0 25 0.00055 39.9 15.5 122 133-286 101-246 (717)
410 PF14583 Pectate_lyase22: Olig 85.8 49 0.0011 34.6 25.8 91 34-151 47-140 (386)
411 KOG1900 Nuclear pore complex, 85.4 12 0.00026 44.6 13.0 72 306-379 176-273 (1311)
412 PHA03098 kelch-like protein; P 85.0 33 0.00072 38.6 16.7 24 146-169 294-323 (534)
413 KOG1916 Nuclear protein, conta 84.8 0.68 1.5E-05 51.8 2.8 123 127-287 127-266 (1283)
414 PF02333 Phytase: Phytase; In 84.4 57 0.0012 34.2 24.9 131 524-671 158-291 (381)
415 COG3391 Uncharacterized conser 84.3 61 0.0013 34.5 29.5 196 135-379 76-284 (381)
416 COG0823 TolB Periplasmic compo 83.8 52 0.0011 35.5 16.4 116 250-377 186-311 (425)
417 KOG2377 Uncharacterized conser 83.6 20 0.00043 37.5 12.1 105 254-365 64-170 (657)
418 PF14781 BBS2_N: Ciliary BBSom 82.4 32 0.00069 29.7 12.8 110 535-670 10-125 (136)
419 PF14781 BBS2_N: Ciliary BBSom 81.8 33 0.00072 29.6 13.9 107 37-168 13-128 (136)
420 KOG2247 WD40 repeat-containing 81.7 0.17 3.6E-06 52.5 -3.0 153 136-341 38-193 (615)
421 PLN00033 photosystem II stabil 81.4 80 0.0017 33.7 17.9 151 256-444 238-395 (398)
422 PF14583 Pectate_lyase22: Olig 81.4 74 0.0016 33.3 26.6 32 259-290 83-114 (386)
423 PF14655 RAB3GAP2_N: Rab3 GTPa 80.8 23 0.00049 37.7 12.1 53 122-177 297-349 (415)
424 PHA02790 Kelch-like protein; P 80.8 78 0.0017 35.0 17.0 24 267-290 362-388 (480)
425 PF14727 PHTB1_N: PTHB1 N-term 80.1 89 0.0019 33.5 33.1 157 34-211 36-204 (418)
426 PF07995 GSDH: Glucose / Sorbo 79.8 81 0.0018 32.8 25.3 59 135-198 4-68 (331)
427 PF14761 HPS3_N: Hermansky-Pud 79.5 8 0.00017 36.4 7.3 72 61-154 6-78 (215)
428 COG3204 Uncharacterized protei 79.1 71 0.0015 31.8 19.0 180 304-504 81-265 (316)
429 KOG1896 mRNA cleavage and poly 78.3 1.6E+02 0.0035 35.4 46.8 172 483-688 1045-1230(1366)
430 PHA03098 kelch-like protein; P 78.2 68 0.0015 36.1 16.0 24 146-169 342-370 (534)
431 PF02897 Peptidase_S9_N: Proly 78.0 1.1E+02 0.0023 33.1 29.1 134 19-184 125-283 (414)
432 COG5167 VID27 Protein involved 77.5 47 0.001 35.5 12.6 124 245-378 499-632 (776)
433 COG5167 VID27 Protein involved 76.8 41 0.00089 35.9 12.0 146 89-287 480-633 (776)
434 KOG4499 Ca2+-binding protein R 76.8 71 0.0015 30.5 20.5 96 478-589 164-262 (310)
435 TIGR02604 Piru_Ver_Nterm putat 76.4 96 0.0021 32.8 15.6 105 257-368 14-143 (367)
436 PRK13616 lipoprotein LpqB; Pro 76.3 1.4E+02 0.0031 33.8 20.4 151 135-332 399-564 (591)
437 TIGR02276 beta_rpt_yvtn 40-res 76.0 11 0.00024 24.6 5.5 28 35-62 4-32 (42)
438 COG4590 ABC-type uncharacteriz 74.9 16 0.00034 38.1 8.4 252 482-765 125-384 (733)
439 PF07569 Hira: TUP1-like enhan 74.8 25 0.00054 33.9 9.6 86 356-460 18-104 (219)
440 PHA02790 Kelch-like protein; P 74.3 1.5E+02 0.0032 32.9 17.6 24 146-169 362-388 (480)
441 COG5276 Uncharacterized conser 73.4 1E+02 0.0022 30.7 29.4 195 132-379 86-286 (370)
442 KOG1900 Nuclear pore complex, 73.2 80 0.0017 38.2 14.4 182 36-289 91-275 (1311)
443 PF10214 Rrn6: RNA polymerase 72.0 2.1E+02 0.0047 33.8 24.0 89 578-669 77-175 (765)
444 COG3386 Gluconolactonase [Carb 70.5 1.3E+02 0.0029 30.7 21.1 142 133-318 111-264 (307)
445 TIGR02276 beta_rpt_yvtn 40-res 69.7 16 0.00035 23.8 5.1 34 707-740 7-40 (42)
446 PRK13684 Ycf48-like protein; P 69.3 1.5E+02 0.0032 30.9 29.4 115 255-377 213-330 (334)
447 PF07569 Hira: TUP1-like enhan 69.3 35 0.00075 32.9 9.2 69 310-379 14-96 (219)
448 KOG3616 Selective LIM binding 68.7 8.9 0.00019 42.4 5.4 109 257-377 15-125 (1636)
449 PF12341 DUF3639: Protein of u 68.0 14 0.00031 21.7 3.7 26 581-608 2-27 (27)
450 KOG2377 Uncharacterized conser 67.9 25 0.00055 36.8 8.1 116 17-168 66-188 (657)
451 TIGR03075 PQQ_enz_alc_DH PQQ-d 67.8 2.1E+02 0.0046 32.1 30.0 116 35-174 70-198 (527)
452 TIGR03606 non_repeat_PQQ dehyd 67.6 1.5E+02 0.0032 32.3 14.2 63 254-320 27-90 (454)
453 PF08801 Nucleoporin_N: Nup133 66.4 1.4E+02 0.0031 32.3 14.5 29 350-378 191-219 (422)
454 KOG2280 Vacuolar assembly/sort 64.8 2.3E+02 0.0051 32.3 15.0 43 133-178 217-259 (829)
455 PRK13979 DNA topoisomerase IV 61.8 3.6E+02 0.0078 32.7 25.1 168 356-554 512-690 (957)
456 KOG1983 Tomosyn and related SN 61.6 85 0.0018 38.1 12.3 57 318-380 209-266 (993)
457 PF11715 Nup160: Nucleoporin N 61.6 24 0.00052 39.8 7.7 34 257-290 215-252 (547)
458 PF10647 Gmad1: Lipoprotein Lp 56.8 2.1E+02 0.0045 28.3 21.5 169 134-343 25-204 (253)
459 PF12768 Rax2: Cortical protei 56.3 1.3E+02 0.0028 30.3 10.7 52 546-612 17-74 (281)
460 COG4590 ABC-type uncharacteriz 56.2 2.8E+02 0.006 29.5 13.9 165 249-450 213-388 (733)
461 TIGR01063 gyrA DNA gyrase, A s 55.9 4.2E+02 0.0091 31.5 25.6 170 426-611 542-719 (800)
462 PF07676 PD40: WD40-like Beta 54.2 53 0.0011 21.0 5.3 30 254-283 6-38 (39)
463 smart00564 PQQ beta-propeller 53.4 27 0.00058 21.3 3.6 25 706-730 8-32 (33)
464 PF12768 Rax2: Cortical protei 51.2 2.3E+02 0.0049 28.6 11.5 37 254-290 34-76 (281)
465 TIGR03118 PEPCTERM_chp_1 conse 51.0 2.8E+02 0.0061 28.1 23.2 246 67-358 24-307 (336)
466 PF12657 TFIIIC_delta: Transcr 49.9 82 0.0018 29.0 7.8 31 257-287 86-122 (173)
467 KOG4460 Nuclear pore complex, 49.9 3.8E+02 0.0082 29.3 13.3 90 582-671 105-199 (741)
468 TIGR02604 Piru_Ver_Nterm putat 48.9 3.5E+02 0.0076 28.6 16.0 39 328-367 164-202 (367)
469 TIGR03074 PQQ_membr_DH membran 48.4 2.5E+02 0.0053 33.1 12.8 39 704-742 691-732 (764)
470 PF14269 Arylsulfotran_2: Aryl 48.3 3.2E+02 0.0069 27.9 14.1 135 135-285 146-288 (299)
471 PF11715 Nup160: Nucleoporin N 47.6 1.2E+02 0.0025 34.3 10.3 85 590-674 156-252 (547)
472 PF01011 PQQ: PQQ enzyme repea 46.8 44 0.00096 21.4 3.9 26 37-62 3-28 (38)
473 PF12657 TFIIIC_delta: Transcr 46.4 2.4E+02 0.0052 25.9 10.9 42 420-461 86-134 (173)
474 PF11635 Med16: Mediator compl 43.1 6.3E+02 0.014 29.9 21.8 66 308-373 259-345 (753)
475 PF01011 PQQ: PQQ enzyme repea 43.0 55 0.0012 21.0 4.0 30 707-736 3-32 (38)
476 COG3292 Predicted periplasmic 41.6 5.3E+02 0.012 28.6 20.9 69 18-105 165-233 (671)
477 PF10647 Gmad1: Lipoprotein Lp 40.5 3.8E+02 0.0081 26.5 17.0 114 134-277 67-186 (253)
478 KOG1983 Tomosyn and related SN 40.2 2.7E+02 0.0058 34.0 11.9 25 265-289 243-267 (993)
479 KOG2063 Vacuolar assembly/sort 39.3 6.5E+02 0.014 30.0 14.1 261 19-374 17-304 (877)
480 COG5161 SFT1 Pre-mRNA cleavage 39.2 7E+02 0.015 29.3 26.2 304 21-388 826-1177(1319)
481 PF14779 BBS1: Ciliary BBSome 38.7 1.8E+02 0.0039 28.6 8.4 73 579-667 175-255 (257)
482 PF13449 Phytase-like: Esteras 37.9 4.8E+02 0.01 27.0 18.8 113 255-368 18-166 (326)
483 PF02333 Phytase: Phytase; In 37.2 5.3E+02 0.011 27.3 24.5 199 89-337 70-291 (381)
484 PF14779 BBS1: Ciliary BBSome 36.9 2.5E+02 0.0054 27.7 9.0 75 131-208 175-255 (257)
485 KOG0918 Selenium-binding prote 36.8 2.3E+02 0.0049 29.6 8.8 112 43-168 228-345 (476)
486 PF11635 Med16: Mediator compl 36.0 8E+02 0.017 29.0 21.4 72 534-605 270-345 (753)
487 PF14655 RAB3GAP2_N: Rab3 GTPa 35.6 5.9E+02 0.013 27.4 31.4 44 247-290 298-341 (415)
488 TIGR03606 non_repeat_PQQ dehyd 35.1 6.3E+02 0.014 27.6 15.3 54 133-189 30-89 (454)
489 COG5276 Uncharacterized conser 34.9 4.9E+02 0.011 26.2 29.5 112 255-379 85-200 (370)
490 PRK10115 protease 2; Provision 34.2 8.2E+02 0.018 28.6 23.0 50 18-76 127-182 (686)
491 PF14870 PSII_BNR: Photosynthe 34.2 5.2E+02 0.011 26.4 33.6 155 253-445 141-301 (302)
492 PF01436 NHL: NHL repeat; Int 32.5 1.1E+02 0.0024 18.0 4.3 25 259-283 4-28 (28)
493 PF07250 Glyoxal_oxid_N: Glyox 32.4 3.3E+02 0.0071 26.8 9.1 34 702-737 179-213 (243)
494 COG1520 FOG: WD40-like repeat 30.6 6.6E+02 0.014 26.5 12.2 70 705-777 112-181 (370)
495 PLN02193 nitrile-specifier pro 30.0 7.8E+02 0.017 27.1 16.2 22 534-555 328-353 (470)
496 COG4247 Phy 3-phytase (myo-ino 29.7 5.4E+02 0.012 25.2 15.5 163 533-721 65-231 (364)
497 COG5308 NUP170 Nuclear pore co 28.0 5.7E+02 0.012 30.1 10.9 210 200-447 99-351 (1263)
498 PF10395 Utp8: Utp8 family; I 27.0 1E+03 0.022 27.4 25.0 261 19-335 29-304 (670)
499 TIGR03547 muta_rot_YjhT mutatr 26.5 7.4E+02 0.016 25.7 16.7 189 430-662 63-332 (346)
500 PF14157 YmzC: YmzC-like prote 25.0 1.6E+02 0.0035 21.5 4.0 25 652-676 29-53 (63)
No 1
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-48 Score=380.53 Aligned_cols=520 Identities=18% Similarity=0.254 Sum_probs=376.5
Q ss_pred eeeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCe--eeeEEEeeccccEEeEEeccccCCCCCCccceeeEE
Q 003423 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (821)
Q Consensus 15 ~~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~--~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l 91 (821)
+|..++|-..|+ |. +.|+++|. .|.|+|||....+ +..+++++.+ +|..|+|+.+. .++
T Consensus 57 EH~~~vtVAkyS--Ps----G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG-~I~Di~Wd~ds-----------~RI 118 (603)
T KOG0318|consen 57 EHAHQVTVAKYS--PS----GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAG-PIKDISWDFDS-----------KRI 118 (603)
T ss_pred cccceeEEEEeC--CC----ceEEeecCCcCcEEEEeccCcceeeeeeeeeccc-ccccceeCCCC-----------cEE
Confidence 388899999999 98 77999998 6999999987633 3355667666 89999999553 366
Q ss_pred EEEcCC---eEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc
Q 003423 92 ALFGEK---RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 92 ~~~g~~---~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
++.|+| ..+++-++.+ .-.-.+.||...|++++|-|. ..-.++||+.|++|.+|+-..-+
T Consensus 119 ~avGEGrerfg~~F~~DSG---------------~SvGei~GhSr~ins~~~Kps--RPfRi~T~sdDn~v~ffeGPPFK 181 (603)
T KOG0318|consen 119 AAVGEGRERFGHVFLWDSG---------------NSVGEITGHSRRINSVDFKPS--RPFRIATGSDDNTVAFFEGPPFK 181 (603)
T ss_pred EEEecCccceeEEEEecCC---------------CccceeeccceeEeeeeccCC--CceEEEeccCCCeEEEeeCCCee
Confidence 665543 2333333332 235568899999999999982 33579999999999999865555
Q ss_pred eeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceee
Q 003423 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (821)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (821)
...++..|.+ .+.+++| +||+.++|+.+.||+|.+||-. +++.
T Consensus 182 Fk~s~r~Hsk-FV~~VRy---sPDG~~Fat~gsDgki~iyDGk---------------------------------tge~ 224 (603)
T KOG0318|consen 182 FKSSFREHSK-FVNCVRY---SPDGSRFATAGSDGKIYIYDGK---------------------------------TGEK 224 (603)
T ss_pred eeeccccccc-ceeeEEE---CCCCCeEEEecCCccEEEEcCC---------------------------------CccE
Confidence 4445555554 6788888 7999999999999999999988 5666
Q ss_pred EEEEe---cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccc--eeEEEEEEcCCEEEE
Q 003423 249 LFRLV---GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN--ARVWDCCLTDSFIIT 323 (821)
Q Consensus 249 ~~~~~---~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~--~~i~~v~~~~~~l~s 323 (821)
+..+. +|++.|++|+|+||+..++|+|.|.++||||+.+.+. .+.. ..+.+ ..-..+.|....|++
T Consensus 225 vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl-----v~t~----~~~~~v~dqqvG~lWqkd~lIt 295 (603)
T KOG0318|consen 225 VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL-----VSTW----PMGSTVEDQQVGCLWQKDHLIT 295 (603)
T ss_pred EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce-----EEEe----ecCCchhceEEEEEEeCCeEEE
Confidence 66776 8999999999999999999999999999999999876 4322 22222 333456667899999
Q ss_pred EeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcc--cCC---ccccccCCC
Q 003423 324 AGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSL--ESH---PEAKEFNGR 397 (821)
Q Consensus 324 ~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~--~~~---~~~~~~~~~ 397 (821)
.+.+|+|.+++. +...+..+.+|.. +|++++.++++++|++|+.||.|.-|+........+ +.| ...+.....
T Consensus 296 VSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~ 374 (603)
T KOG0318|consen 296 VSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES 374 (603)
T ss_pred EEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCC
Confidence 999999999999 7789999999998 799999999999999999999999999954322222 222 122223333
Q ss_pred cceEEeecCCcccceecc---------CCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceE
Q 003423 398 TEIFSIKIPNFSEQIRLT---------DSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPII 468 (821)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~---------~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~ 468 (821)
.+++.....+........ ..-..+..+++..+++.+++.+..+.+..++ +.. .+...+......
T Consensus 375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~--~~~-----~~~~~~~~y~~s 447 (603)
T KOG0318|consen 375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQ--DQT-----KVSSIPIGYESS 447 (603)
T ss_pred CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEe--cCC-----cceeeccccccc
Confidence 445544433332221110 0112345688888887555555545544322 111 122222333444
Q ss_pred EEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEE
Q 003423 469 CMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLK 548 (821)
Q Consensus 469 ~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 548 (821)
++++. |++..+++|+.||++++|.+.........+. .-+. ..+. ...++|++.||++++..+++.
T Consensus 448 ~vAv~--------~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~--~~h~---a~iT--~vaySpd~~yla~~Da~rkvv 512 (603)
T KOG0318|consen 448 AVAVS--------PDGSEVAVGGQDGKVHVYSLSGDELKEEAKL--LEHR---AAIT--DVAYSPDGAYLAAGDASRKVV 512 (603)
T ss_pred eEEEc--------CCCCEEEEecccceEEEEEecCCcccceeee--eccc---CCce--EEEECCCCcEEEEeccCCcEE
Confidence 55553 4669999999999999999988664322111 1111 1122 245889999999999999999
Q ss_pred EeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcc
Q 003423 549 LWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPL 628 (821)
Q Consensus 549 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~ 628 (821)
+||+...+. ....+ .-|.++|.|++|+|++.+||+|+-|-+|.||++++.. ..
T Consensus 513 ~yd~~s~~~-------------~~~~w-~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~------------~~- 565 (603)
T KOG0318|consen 513 LYDVASREV-------------KTNRW-AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA------------KH- 565 (603)
T ss_pred EEEcccCce-------------eccee-eeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh------------hh-
Confidence 999988732 11122 3489999999999999999999999999999998531 11
Q ss_pred cccccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEee
Q 003423 629 NYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYD 670 (821)
Q Consensus 629 ~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~ 670 (821)
-..+++| ...|+++.|. + +..++|+|.|.+||+|++.
T Consensus 566 i~iknAH-~~gVn~v~wl---d-e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 566 IIIKNAH-LGGVNSVAWL---D-ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred eEecccc-ccCceeEEEe---c-CceEEeccCcceeEEeccc
Confidence 2445699 4569999999 3 4789999999999999874
No 2
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-46 Score=381.77 Aligned_cols=568 Identities=16% Similarity=0.191 Sum_probs=412.6
Q ss_pred EEEeccCCCCCCcceEEeecCCeEEEEECCCCee-eeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEE
Q 003423 23 LCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTL-IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKL 101 (821)
Q Consensus 23 l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~-~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i 101 (821)
++|+ ++ +..|++..+..|.+-|+.+++. +..........+.++.+.|+. ..++.+...+.+++
T Consensus 25 ~~~s--~n----G~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~----------~~L~~a~rs~llrv 88 (775)
T KOG0319|consen 25 VAWS--SN----GQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDE----------EVLVTASRSQLLRV 88 (775)
T ss_pred eeEC--CC----CCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCc----------cEEEEeeccceEEE
Confidence 7889 87 7899999999999999999988 555555556679999988662 36777778899999
Q ss_pred EEEeecCCCCCCCCCccccccceeeeccC-CCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCccee
Q 003423 102 FELNFELSPNSQYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180 (821)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 180 (821)
|.+..+ +.++.++. |..+|.-++|+| .+.+||+|+.|+.+++||+..+.++..++++.+ +
T Consensus 89 ~~L~tg---------------k~irswKa~He~Pvi~ma~~~---~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gG-v 149 (775)
T KOG0319|consen 89 WSLPTG---------------KLIRSWKAIHEAPVITMAFDP---TGTLLATGGADGRVKVWDIKNGYCTHSFKGHGG-V 149 (775)
T ss_pred EEcccc---------------hHhHhHhhccCCCeEEEEEcC---CCceEEeccccceEEEEEeeCCEEEEEecCCCc-e
Confidence 999865 56777777 999999999999 899999999999999999999999999998765 5
Q ss_pred EEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEE
Q 003423 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF 260 (821)
Q Consensus 181 ~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 260 (821)
+.++.|++. +...+|++|..|+.+++||++. ...++..+..|...|+
T Consensus 150 Vssl~F~~~-~~~~lL~sg~~D~~v~vwnl~~--------------------------------~~tcl~~~~~H~S~vt 196 (775)
T KOG0319|consen 150 VSSLLFHPH-WNRWLLASGATDGTVRVWNLND--------------------------------KRTCLHTMILHKSAVT 196 (775)
T ss_pred EEEEEeCCc-cchhheeecCCCceEEEEEccc--------------------------------CchHHHHHHhhhhhee
Confidence 788888765 4567899999999999999981 2235777889999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-------CCEEEEEeCCCeEEEE
Q 003423 261 RIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-------DSFIITAGEDCTCRVW 333 (821)
Q Consensus 261 ~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-------~~~l~s~~~dg~i~iw 333 (821)
+++|++|+..+++++.|+.+.+||+.+.+. .+ ++ .-...+-++.+. +.+++|+|++|.+++|
T Consensus 197 sL~~~~d~~~~ls~~RDkvi~vwd~~~~~~-----l~-----~l-p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~ 265 (775)
T KOG0319|consen 197 SLAFSEDSLELLSVGRDKVIIVWDLVQYKK-----LK-----TL-PLYESLESVVRLREELGGKGEYIITAGGSGVVQYW 265 (775)
T ss_pred eeeeccCCceEEEeccCcEEEEeehhhhhh-----hh-----ee-chhhheeeEEEechhcCCcceEEEEecCCceEEEE
Confidence 999999999999999999999999976554 21 11 112223344443 2599999999999999
Q ss_pred cC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCc-CCCcccC---Ccccccc-CCCcceEEeecCC
Q 003423 334 GS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLES---HPEAKEF-NGRTEIFSIKIPN 407 (821)
Q Consensus 334 d~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~-~~~~~~~---~~~~~~~-~~~~~~~~~~~~~ 407 (821)
|. .++++.+.+......+..+...+....++....|..+.++|.+.- ..+.+-+ ....+.+ .+....+.+....
T Consensus 266 d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs 345 (775)
T KOG0319|consen 266 DSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNS 345 (775)
T ss_pred ecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCC
Confidence 99 556655544432323666666666677777788999999987552 2222222 1222211 1111111111100
Q ss_pred c--------ccceeccCCCCcceEEEEeecCCeEEEEec-CCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCC
Q 003423 408 F--------SEQIRLTDSKSEYVRCLHLTSEDTLYIATN-HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPK 478 (821)
Q Consensus 408 ~--------~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~-~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 478 (821)
. ........+|++.|.++....+|.++++++ +..+..|++.+........-....+...+.++.+...
T Consensus 346 ~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~--- 422 (775)
T KOG0319|consen 346 PELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL--- 422 (775)
T ss_pred CceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc---
Confidence 0 011225678899999999666776666654 4446666663322211111111224566666666443
Q ss_pred CCCCCCcEEEEecCCccEEEEEecCCCCC-CcceeEEeecc-CccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCC
Q 003423 479 YPCGIDDWVALGDGKGNMTIVRVVGDVHT-PQLSFTFTWSA-GIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPF 556 (821)
Q Consensus 479 ~s~~~~~~l~~g~~~g~i~i~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 556 (821)
...++++++.|.++++|++...... +...+...... .+...+.+ ..++|+.++++||+.|.+.+||+++..
T Consensus 423 ----~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~--Vaia~ndkLiAT~SqDktaKiW~le~~- 495 (775)
T KOG0319|consen 423 ----GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC--VAIAPNDKLIATGSQDKTAKIWDLEQL- 495 (775)
T ss_pred ----CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc--eEecCCCceEEecccccceeeecccCc-
Confidence 4589999999999999999872221 11111111000 11112222 246688899999999999999999965
Q ss_pred CcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccC
Q 003423 557 SSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHG 636 (821)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 636 (821)
.+...+ .+|...|.|+.|+|+++.||++|.|++|+||.++ .+..+.+|. .|
T Consensus 496 -------------~l~~vL-sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is-------------~fSClkT~e-GH- 546 (775)
T KOG0319|consen 496 -------------RLLGVL-SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS-------------TFSCLKTFE-GH- 546 (775)
T ss_pred -------------eEEEEe-eCCccceEEEEeccccceeEeccCCceEEEEEec-------------cceeeeeec-Cc-
Confidence 777887 8999999999999999999999999999999998 566777884 56
Q ss_pred CcceEEEEEEecCCCceEEEEecCCCeEEEEEeecCCceeeeeeeeeeeeeeeeeeeccCCCccC-----CCCCeEEEee
Q 003423 637 ISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSID-----LASCNYAAGF 711 (821)
Q Consensus 637 ~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~g~ 711 (821)
..+|--..|. .++..|+|+|.||-+++|++... .|..+++.|...+| +..+++++|+
T Consensus 547 ~~aVlra~F~---~~~~qliS~~adGliKlWnikt~---------------eC~~tlD~H~DrvWaL~~~~~~~~~~tgg 608 (775)
T KOG0319|consen 547 TSAVLRASFI---RNGKQLISAGADGLIKLWNIKTN---------------ECEMTLDAHNDRVWALSVSPLLDMFVTGG 608 (775)
T ss_pred cceeEeeeee---eCCcEEEeccCCCcEEEEeccch---------------hhhhhhhhccceeEEEeecCccceeEecC
Confidence 6789888898 67899999999999999999663 35556666666665 4456789999
Q ss_pred ecccEEEEECccccE
Q 003423 712 ASTDFIIWNLITEAK 726 (821)
Q Consensus 712 ~~~~~~vW~~~~~~~ 726 (821)
.|+.|++|...|+++
T Consensus 609 ~Dg~i~~wkD~Te~~ 623 (775)
T KOG0319|consen 609 GDGRIIFWKDVTEEE 623 (775)
T ss_pred CCeEEEEeecCcHHH
Confidence 999999999776654
No 3
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=100.00 E-value=2.1e-43 Score=375.46 Aligned_cols=647 Identities=28% Similarity=0.392 Sum_probs=446.1
Q ss_pred eeeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 15 QYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 15 ~~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
.+.+|+++.++. .+||++|+++.|.+||+.++.++..+..++..++| .+.+....-. ..++.++
T Consensus 5 s~~~~l~~~~~~--------~~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~----~~~v~~~ 68 (967)
T KOG0974|consen 5 SSLGPLNLPQLV--------SDYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLS----GKIVTCA 68 (967)
T ss_pred cccccccchhhc--------cceeeecCCCceEEeeCCchhHhhhhhhhcccccc----cccccceecc----ceEEEEE
Confidence 366777777777 25999999999999999999999988888877777 2111000000 1233333
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
+-+.+..-+.. ...+..-.+||....+.. ....++.++.++.+.+||...+..+.++.
T Consensus 69 ~~~~v~~~~~~-------------------~~~~~~~s~wi~g~~l~~---e~k~i~l~~~~ns~~i~d~~~~~~~~~i~ 126 (967)
T KOG0974|consen 69 KSDEVYVKEAS-------------------NQIIERFSDWIFGAKLFE---ENKKIALVTSRNSLLIRDSKNSSVLSKIQ 126 (967)
T ss_pred eecceeecchh-------------------hhhhhhccccccccchhh---hcceEEEEEcCceEEEEecccCceehhcC
Confidence 33332222221 223334568888877776 77889999999999999999999999999
Q ss_pred cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (821)
+.+++.++++..+..+++..++++|+..|+|.+|++.. ...+. .+.|
T Consensus 127 ~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~--------------------------------dn~p~-~l~G 173 (967)
T KOG0974|consen 127 SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE--------------------------------DNKPI-RLKG 173 (967)
T ss_pred CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc--------------------------------cCCcc-eecc
Confidence 99999999999999999999999999999999999871 22222 6789
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEc
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWG 334 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd 334 (821)
|++.|+.+.++.||++++|+|+|+++|+|++.+.+. .. ....+|+++||.++|.++.++|+++|.++++|+
T Consensus 174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~-----~~----~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV-----LG----CTGFGHSARVWACCFLPNRIITVGEDCTCRVWG 244 (967)
T ss_pred cCCceEEEEEccCCcEEEEEecCcceeeeecccccc-----cC----cccccccceeEEEEeccceeEEeccceEEEEEe
Confidence 999999999999999999999999999999999765 32 378899999999999999999999999999999
Q ss_pred CCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceec
Q 003423 335 SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRL 414 (821)
Q Consensus 335 ~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (821)
.++..+..+..|.++.||.++..++...++|++.|+.+++|++.+.....-..... ....+..
T Consensus 245 ~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~~~~~~-----------~~~s~~k------ 307 (967)
T KOG0974|consen 245 VNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGHVEQSS-----------LLSSIVK------ 307 (967)
T ss_pred cccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccccceeeee-----------eecchhh------
Confidence 99999999999999999999999999999999999999999996543222111000 0000000
Q ss_pred cCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCC-CCCCCCCCcEEEEecCC
Q 003423 415 TDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE-PKYPCGIDDWVALGDGK 493 (821)
Q Consensus 415 ~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~~~~l~~g~~~ 493 (821)
.....|.....++..+..+... .+... ...+++..+...... ...+...+.+++.++..
T Consensus 308 -------l~~~~f~k~~~~~~~~~~~~~~--~~~~~-----------~~~~~l~~~~~~s~~~i~~~~~~~~~v~~~~~k 367 (967)
T KOG0974|consen 308 -------LKDDQFVKCDTLLNFANHGGKL--SILGN-----------KGEKELITFESDSMLRIIFSCTNDDWVAHMSNK 367 (967)
T ss_pred -------hcceeeeehHHHHHHHhcCCeE--eeccc-----------ccccceeeeeeccCccceehccccceeeeccCC
Confidence 0111222222222222222200 01110 011111111111111 22223456788888888
Q ss_pred ccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeE
Q 003423 494 GNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVA 573 (821)
Q Consensus 494 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 573 (821)
+.+++..+......+.......++.....+... -.+...-..+|..++|........ ..+...+...+
T Consensus 368 ~~~~v~~~~~~~~~~~~~~h~~~s~~~~~~~~~--------~~~~~~~~~~g~~~~r~~~~~~~~----~ad~~~i~~~~ 435 (967)
T KOG0974|consen 368 GDIYVAWHQNTIVITTSSLHRKLSANPISQVCE--------ASYVASKLIDGSIQVRNLSGSLES----FADVLNIRSLK 435 (967)
T ss_pred CcEEEEEeecccCccchhHHHHHhhCcccceee--------eeeehhhccCCcchhhhhhccccc----ccceeEEeeee
Confidence 888887665433222111111222222111111 123334445677777765433211 11223344555
Q ss_pred EEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccCCcceEEEEEEecCCCce
Q 003423 574 EFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQT 653 (821)
Q Consensus 574 ~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~ 653 (821)
.|.......++|+.-.+.+..++.|++.|.|.+|++..... .+......+|+-.+++++.+....++.-
T Consensus 436 ~f~~~~~~~~~~l~~~~~~~~~l~Gs~~g~lv~~~l~~~~~-----------~~~~~~~~~~~~~~~~si~~~~~kdn~~ 504 (967)
T KOG0974|consen 436 EFRLPFAFRIPCLTSVVEDNLILIGSRHGELVLYNLDEPND-----------DIVLSLSRSHELDTGSSITCIRSKDNSA 504 (967)
T ss_pred eeccccCCCCcceecccCcceEEEccCcCcEEEecCCCCCc-----------cceeeccCcccccccccEEEEecCCCcE
Confidence 55556677789999888899999999999999999985311 1111111157777888888887778889
Q ss_pred EEEEecCCCeEEEEEeecCCceeeeeeeeeeeeeeeeeeeccCCCccCCCCCeEEEeeecccEEEEECccccEEEEEeeC
Q 003423 654 EIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCG 733 (821)
Q Consensus 654 ~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~vW~~~~~~~l~~i~cg 733 (821)
++.++|+||++.++++.+......+.++...+..+.+.....++..+|.+++++++||.+..|++||+++..+++.+.||
T Consensus 505 ~~~~~g~dg~~~~~~~~r~~~~n~~~~L~~~~~~s~v~~g~~~~~~~~~k~n~~~~gf~st~f~l~n~T~~~~i~~~~cG 584 (967)
T KOG0974|consen 505 IFMTTGRDGYWSTIELIRGGTTNYPMELMNKKSFSTVSSGALPSKFINWKGNLLIVGFYSTSFILWNETNETPIFETYCG 584 (967)
T ss_pred EEEEecCCcEEEEEEEecCccccccceeeeeccCCeeeecchhhhhccCCCceEEEEEEeccceEeccccCceeEEEEeC
Confidence 99999999999999998776655566666666666665555667778888999999999999999999999999999999
Q ss_pred CCCccceeecCCCCCcceeEEEEeeceEEEEcc-ccCceeeEEeeccccceeeeeeehhhhheeeeecCCCcc
Q 003423 734 GWRRPHSYFLGDVPEIKNCFAYVKANQLWRLRD-LCSLIWWILHQDLHNMKLYKHFLCSLFNILMILCPFPYE 805 (821)
Q Consensus 734 g~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (821)
|.||+|++.....+ -.++..++++.+++.. ....+.-.+.+|+|||++-+-..+. +-..+.+--+|--
T Consensus 585 g~hr~wal~g~t~~---~~~~re~~~~~~i~~~~~~~~~s~~~~nglh~~~irai~~~~-~~ttv~~~~~~~~ 653 (967)
T KOG0974|consen 585 GSHRIWALNGSTDN---QFNFREIASSQLIRQKIDNLSRNSWISNGLHGREIRAISFSP-YSTTVSLDEHLSG 653 (967)
T ss_pred CeeEEeecCCcccc---ceeeeecccccEEEEEeecccccccccCCCCCCceeeeEecc-cccceecccCCcc
Confidence 99999999864332 3556667777888753 3445556788999999998655544 3344444444433
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-44 Score=337.55 Aligned_cols=325 Identities=19% Similarity=0.292 Sum_probs=261.6
Q ss_pred ceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeC
Q 003423 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (821)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (821)
+.-..+.||.++|.|++|+| +|..||+|+.|.++|+||+.+.....+.++|.. -+.++++ +||+..||+|+.|
T Consensus 106 rCssS~~GH~e~Vl~~~fsp---~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~-WVlcvaw---sPDgk~iASG~~d 178 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSP---TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKN-WVLCVAW---SPDGKKIASGSKD 178 (480)
T ss_pred eeccccCCCCCcEEEEEecC---CCceEEecCCCceEEeeccCCCCcceeecCCcc-EEEEEEE---CCCcchhhccccC
Confidence 45667899999999999999 999999999999999999999999999888865 3445554 6999999999999
Q ss_pred CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcC-----CCCEEEEEeCC
Q 003423 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-----CGSKLVSVSDD 277 (821)
Q Consensus 203 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-----~~~~l~s~s~D 277 (821)
|+|++||..+ ..+....+.+|...|++++|.| ..++||+++.|
T Consensus 179 g~I~lwdpkt--------------------------------g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skD 226 (480)
T KOG0271|consen 179 GSIRLWDPKT--------------------------------GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKD 226 (480)
T ss_pred CeEEEecCCC--------------------------------CCcccccccCcccceeEEeecccccCCCccceecccCC
Confidence 9999999881 2344566889999999999987 56799999999
Q ss_pred CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEE
Q 003423 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCL 355 (821)
Q Consensus 278 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~ 355 (821)
|+|+|||+..+.. + ..+.||+.+|+|++|. ..++++++.|++|++|+. +|++.+.+++|.. .|..++
T Consensus 227 g~vrIWd~~~~~~-----~-----~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHah-wvN~la 295 (480)
T KOG0271|consen 227 GSVRIWDTKLGTC-----V-----RTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAH-WVNHLA 295 (480)
T ss_pred CCEEEEEccCceE-----E-----EEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccch-heeeee
Confidence 9999999998765 3 6899999999999999 689999999999999999 8999999999988 588888
Q ss_pred Ee-----------cCCC-------------------------EEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcc
Q 003423 356 YD-----------SLSS-------------------------LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTE 399 (821)
Q Consensus 356 ~~-----------~~~~-------------------------~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 399 (821)
.+ |.++ .+++|+.|+++.+|+....
T Consensus 296 lsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~------------------- 356 (480)
T KOG0271|consen 296 LSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS------------------- 356 (480)
T ss_pred ccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc-------------------
Confidence 76 2233 4888888888888887321
Q ss_pred eEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCC
Q 003423 400 IFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKY 479 (821)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 479 (821)
..++..+.+|...|..+.|+||+++++++
T Consensus 357 ---------kkpi~rmtgHq~lVn~V~fSPd~r~IASa------------------------------------------ 385 (480)
T KOG0271|consen 357 ---------KKPITRMTGHQALVNHVSFSPDGRYIASA------------------------------------------ 385 (480)
T ss_pred ---------ccchhhhhchhhheeeEEECCCccEEEEe------------------------------------------
Confidence 01122233445567777777776555554
Q ss_pred CCCCCcEEEEecCCccEEEEEecCCCC------CCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeec
Q 003423 480 PCGIDDWVALGDGKGNMTIVRVVGDVH------TPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLC 553 (821)
Q Consensus 480 s~~~~~~l~~g~~~g~i~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 553 (821)
+-|..|++|+-.+++. +-..++.++|+. |.++|++++.|.++++|++.
T Consensus 386 -----------SFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa---------------DsRLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 386 -----------SFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA---------------DSRLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred -----------ecccceeeeeCCCcchhhhhhhccceeEEEEecc---------------CccEEEEcCCCceEEEEEee
Confidence 4445556666555443 223344555554 45899999999999999999
Q ss_pred CCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEe
Q 003423 554 DPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFP 608 (821)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~ 608 (821)
.. ++...+ .+|..+|-+++|+|||+.+++|+.|..+++|.
T Consensus 440 tk--------------Kl~~DL-pGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 440 TK--------------KLKQDL-PGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ee--------------eecccC-CCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 87 444444 78999999999999999999999999999994
No 5
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.5e-42 Score=350.92 Aligned_cols=511 Identities=15% Similarity=0.160 Sum_probs=382.4
Q ss_pred CCCcceeeccce--------eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEec
Q 003423 4 KDLSEWRLDVGQ--------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (821)
Q Consensus 4 ~~i~~w~~~~~~--------~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~ 74 (821)
.-+++|.+.+++ |.+||.-++|+ |. +.+|++|. |+.++|||+..+...+.++.|.+ .|+.+.|.
T Consensus 84 ~llrv~~L~tgk~irswKa~He~Pvi~ma~~--~~----g~LlAtggaD~~v~VWdi~~~~~th~fkG~gG-vVssl~F~ 156 (775)
T KOG0319|consen 84 QLLRVWSLPTGKLIRSWKAIHEAPVITMAFD--PT----GTLLATGGADGRVKVWDIKNGYCTHSFKGHGG-VVSSLLFH 156 (775)
T ss_pred ceEEEEEcccchHhHhHhhccCCCeEEEEEc--CC----CceEEeccccceEEEEEeeCCEEEEEecCCCc-eEEEEEeC
Confidence 457899999987 89999999999 87 57788776 99999999999999999998777 79999999
Q ss_pred cccCCCCCCccceeeEEEEE--cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEE
Q 003423 75 FINCTEGSVSTRVTFEVALF--GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (821)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~--g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t 152 (821)
|.. .+.++.+ .|+.+++||+.... .+++.+..|...|++++|++ ++..+++
T Consensus 157 ~~~----------~~~lL~sg~~D~~v~vwnl~~~~--------------tcl~~~~~H~S~vtsL~~~~---d~~~~ls 209 (775)
T KOG0319|consen 157 PHW----------NRWLLASGATDGTVRVWNLNDKR--------------TCLHTMILHKSAVTSLAFSE---DSLELLS 209 (775)
T ss_pred Ccc----------chhheeecCCCceEEEEEcccCc--------------hHHHHHHhhhhheeeeeecc---CCceEEE
Confidence 774 1233333 37999999998653 35788999999999999999 9999999
Q ss_pred EECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCC--ccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCC
Q 003423 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDN--LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (821)
Q Consensus 153 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 230 (821)
++.|..+.|||+.+.+.++.+...+. +-++.+.... ..+.++.+++.+|.+++||....
T Consensus 210 ~~RDkvi~vwd~~~~~~l~~lp~ye~--~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~----------------- 270 (775)
T KOG0319|consen 210 VGRDKVIIVWDLVQYKKLKTLPLYES--LESVVRLREELGGKGEYIITAGGSGVVQYWDSESG----------------- 270 (775)
T ss_pred eccCcEEEEeehhhhhhhheechhhh--eeeEEEechhcCCcceEEEEecCCceEEEEecccc-----------------
Confidence 99999999999977766655543321 2222222221 22569999999999999998822
Q ss_pred CCCcceeeecccccceeeEEEEecC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccce
Q 003423 231 SSDFKCFKLQDQQHTAVNLFRLVGH-EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (821)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 309 (821)
......+.. ...+..+...+....++....|.++.++|.++.+. . ..+.|...
T Consensus 271 ----------------~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i-----~-----k~ivG~nd 324 (775)
T KOG0319|consen 271 ----------------KCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTI-----V-----KQIVGYND 324 (775)
T ss_pred ----------------hhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEE-----e-----hhhcCCch
Confidence 111111111 12256666666666777788899999999888654 3 57888999
Q ss_pred eEEEEEEcC---CEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCccc
Q 003423 310 RVWDCCLTD---SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLE 386 (821)
Q Consensus 310 ~i~~v~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~ 386 (821)
.|.+++|-+ ++++.++..+.+|+++..+.....+.+|.. .|.+++...+|-+|+||+.|.++++|.++..+.+
T Consensus 325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e-~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~--- 400 (775)
T KOG0319|consen 325 EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTE-AVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK--- 400 (775)
T ss_pred hheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchh-heeeeeecccCcEEEEecCCceEEEEEecCCcch---
Confidence 999999984 899999999999999997666669999998 6999997777889999999999999998443211
Q ss_pred CCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCC-eEEEEe-cCCcEEEEEecCCCcceeeE-----ee
Q 003423 387 SHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIAT-NHGYLYHTKLCDMDSVNWNK-----IL 459 (821)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~-~~l~~~-~~g~~~~~~i~~~~~~~~~~-----~~ 459 (821)
...+....+|...|.+++++..+ .++++. +++.+..|.+.......... ..
T Consensus 401 ----------------------~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 401 ----------------------SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT 458 (775)
T ss_pred ----------------------hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence 11223345677789999997655 444444 44445433333211111111 12
Q ss_pred eccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEE
Q 003423 460 QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIF 539 (821)
Q Consensus 460 ~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 539 (821)
...+...|.|+++.+ ++.++|+|+.|.+.+||++..... ...+..|. +.+.++ .|++..+.++
T Consensus 459 ~~aHdKdIN~Vaia~--------ndkLiAT~SqDktaKiW~le~~~l----~~vLsGH~---RGvw~V--~Fs~~dq~la 521 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAP--------NDKLIATGSQDKTAKIWDLEQLRL----LGVLSGHT---RGVWCV--SFSKNDQLLA 521 (775)
T ss_pred HHhhcccccceEecC--------CCceEEecccccceeeecccCceE----EEEeeCCc---cceEEE--EeccccceeE
Confidence 234577888888865 459999999999999999874332 11222222 222222 2556678999
Q ss_pred EECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCccccccccc
Q 003423 540 TADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSV 619 (821)
Q Consensus 540 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~ 619 (821)
|++.|++|+||.+.+. .|.++| .+|...|.-+.|-.+++.|++++.||-|++|++.++
T Consensus 522 T~SgD~TvKIW~is~f--------------SClkT~-eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~------- 579 (775)
T KOG0319|consen 522 TCSGDKTVKIWSISTF--------------SCLKTF-EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN------- 579 (775)
T ss_pred eccCCceEEEEEeccc--------------eeeeee-cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch-------
Confidence 9999999999999987 899998 899999999999999999999999999999999853
Q ss_pred ccccccCcccccccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEe
Q 003423 620 ALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (821)
Q Consensus 620 ~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~ 669 (821)
....++ ..| ++.|=++... +...+++|+|.||.|.+|.=
T Consensus 580 ------eC~~tl-D~H-~DrvWaL~~~---~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 580 ------ECEMTL-DAH-NDRVWALSVS---PLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred ------hhhhhh-hhc-cceeEEEeec---CccceeEecCCCeEEEEeec
Confidence 234444 377 7889888777 45578999999999999953
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.3e-39 Score=317.20 Aligned_cols=533 Identities=12% Similarity=0.115 Sum_probs=377.1
Q ss_pred cceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcC--CeEEEEEEeecCCCCC
Q 003423 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE--KRVKLFELNFELSPNS 112 (821)
Q Consensus 35 ~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~--~~v~i~~~~~~~~~~~ 112 (821)
+.-++-..+..|.+-++++......+..| ...+.-..++|.+ ..+++|| |.||||+...++
T Consensus 30 gd~ilY~nGksv~ir~i~~~~~~~iYtEH-~~~vtVAkySPsG------------~yiASGD~sG~vRIWdtt~~~---- 92 (603)
T KOG0318|consen 30 GDNILYTNGKSVIIRNIDNPASVDIYTEH-AHQVTVAKYSPSG------------FYIASGDVSGKVRIWDTTQKE---- 92 (603)
T ss_pred CCeEEEeCCCEEEEEECCCccceeeeccc-cceeEEEEeCCCc------------eEEeecCCcCcEEEEeccCcc----
Confidence 56777778889999999998887777765 4467777888775 3445554 999999987543
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC--CCcEEEEEccCCceeEEEccCcceeEEEEeeccCC
Q 003423 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDN 190 (821)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s 190 (821)
.-+...++...++|.+++|++ +++.+++.++ ++..+++-.++|..+.++.+|.+. +.++.|-+
T Consensus 93 ---------hiLKnef~v~aG~I~Di~Wd~---ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~-ins~~~Kp-- 157 (603)
T KOG0318|consen 93 ---------HILKNEFQVLAGPIKDISWDF---DSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRR-INSVDFKP-- 157 (603)
T ss_pred ---------eeeeeeeeecccccccceeCC---CCcEEEEEecCccceeEEEEecCCCccceeecccee-EeeeeccC--
Confidence 234445666779999999999 8888776643 333444444477788888888764 56777743
Q ss_pred ccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCE
Q 003423 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (821)
Q Consensus 191 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~ 270 (821)
...-++++|+.|+.|.+|+-. ..+.-.+++.|..-|+|+.|+|||.+
T Consensus 158 sRPfRi~T~sdDn~v~ffeGP---------------------------------PFKFk~s~r~HskFV~~VRysPDG~~ 204 (603)
T KOG0318|consen 158 SRPFRIATGSDDNTVAFFEGP---------------------------------PFKFKSSFREHSKFVNCVRYSPDGSR 204 (603)
T ss_pred CCceEEEeccCCCeEEEeeCC---------------------------------CeeeeecccccccceeeEEECCCCCe
Confidence 345789999999999999865 44555677789999999999999999
Q ss_pred EEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEEeCCCeEEEEcC-CCceeeEeeccc
Q 003423 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (821)
Q Consensus 271 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~ 347 (821)
+||++.||.+.+||-.+++. +.++ ..-.+|++.|+++.|+| ..++|++.|.++++||+ +.++++++....
T Consensus 205 Fat~gsDgki~iyDGktge~-----vg~l--~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~ 277 (603)
T KOG0318|consen 205 FATAGSDGKIYIYDGKTGEK-----VGEL--EDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGS 277 (603)
T ss_pred EEEecCCccEEEEcCCCccE-----EEEe--cCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCC
Confidence 99999999999999999876 5433 22448999999999994 79999999999999999 778888876543
Q ss_pred C--CCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEE
Q 003423 348 G--RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (821)
Q Consensus 348 ~--~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 425 (821)
. ..-..+.|. +..|++.+.+|.|..++.... .......+|...|+++
T Consensus 278 ~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~-----------------------------~~~~~i~GHnK~ITaL 326 (603)
T KOG0318|consen 278 TVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP-----------------------------SVLKVISGHNKSITAL 326 (603)
T ss_pred chhceEEEEEEe--CCeEEEEEcCcEEEEecccCC-----------------------------ChhheecccccceeEE
Confidence 3 112234443 678999999999999987431 1223345667889999
Q ss_pred EeecCCeEEE-EecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCC
Q 003423 426 HLTSEDTLYI-ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGD 504 (821)
Q Consensus 426 ~f~~~~~~l~-~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~ 504 (821)
+.+++++.+. ++.+|.+..|.+... .-.++....+...+.++.... ...+.+.+.|.++++.++...
T Consensus 327 tv~~d~~~i~SgsyDG~I~~W~~~~g---~~~~~~g~~h~nqI~~~~~~~---------~~~~~t~g~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 327 TVSPDGKTIYSGSYDGHINSWDSGSG---TSDRLAGKGHTNQIKGMAASE---------SGELFTIGWDDTLRVISLKDN 394 (603)
T ss_pred EEcCCCCEEEeeccCceEEEEecCCc---cccccccccccceEEEEeecC---------CCcEEEEecCCeEEEEecccC
Confidence 9999886554 556787776555433 223343344566777776633 245666667778888776543
Q ss_pred CCCCccee-------EEeeccCc-----------------------cceeeeeEEeecCCCeEEEEECCCCcEEEeeecC
Q 003423 505 VHTPQLSF-------TFTWSAGI-----------------------ERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCD 554 (821)
Q Consensus 505 ~~~~~~~~-------~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 554 (821)
........ .++..++. +-.......+.+|++..++.|+.||.|++|.+..
T Consensus 395 ~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g 474 (603)
T KOG0318|consen 395 GYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG 474 (603)
T ss_pred cccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC
Confidence 33111111 11111110 0001112235678999999999999999999987
Q ss_pred CCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccc
Q 003423 555 PFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGA 634 (821)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (821)
...... .. ...|.++|++++||||+.+||+|+..+.+.+||+.... .....+ .-
T Consensus 475 ~~l~ee------------~~-~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~------------~~~~~w-~F 528 (603)
T KOG0318|consen 475 DELKEE------------AK-LLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASRE------------VKTNRW-AF 528 (603)
T ss_pred Ccccce------------ee-eecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCc------------eeccee-ee
Confidence 631111 11 35789999999999999999999999999999988531 111111 23
Q ss_pred cCCcceEEEEEEecCCCceEEEEecCCCeEEEEEeecCCceeeeeeeeeeeeeeeeeeeccCCCccCCCCCeEEEeeecc
Q 003423 635 HGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFAST 714 (821)
Q Consensus 635 h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~ 714 (821)
| ...|.+|+|. +++.+++|++.|.+|.||++++.... ..++..|... +.. ..|.+.+.+++.++|.
T Consensus 529 H-takI~~~aWs---P~n~~vATGSlDt~Viiysv~kP~~~---i~iknAH~~g-Vn~------v~wlde~tvvSsG~Da 594 (603)
T KOG0318|consen 529 H-TAKINCVAWS---PNNKLVATGSLDTNVIIYSVKKPAKH---IIIKNAHLGG-VNS------VAWLDESTVVSSGQDA 594 (603)
T ss_pred e-eeeEEEEEeC---CCceEEEeccccceEEEEEccChhhh---eEeccccccC-cee------EEEecCceEEeccCcc
Confidence 5 5689999999 56689999999999999999764322 2222222222 222 2356677799999999
Q ss_pred cEEEEECc
Q 003423 715 DFIIWNLI 722 (821)
Q Consensus 715 ~~~vW~~~ 722 (821)
.+.+||.+
T Consensus 595 ~iK~W~v~ 602 (603)
T KOG0318|consen 595 NIKVWNVT 602 (603)
T ss_pred eeEEeccc
Confidence 99999974
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.7e-39 Score=327.38 Aligned_cols=553 Identities=14% Similarity=0.184 Sum_probs=392.4
Q ss_pred CCCcceeeccce-------eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEecc
Q 003423 4 KDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNF 75 (821)
Q Consensus 4 ~~i~~w~~~~~~-------~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~ 75 (821)
+.+-++|+.+.+ +...|++++.| |+ +.+|++.. .|...+.++.....++++.- +. +|.+|+|+|
T Consensus 35 Nrvsv~dLknN~S~Tl~~e~~~NI~~ialS--p~----g~lllavdE~g~~~lvs~~~r~Vlh~f~f-k~-~v~~i~fSP 106 (893)
T KOG0291|consen 35 NRVSVFDLKNNKSYTLPLETRYNITRIALS--PD----GTLLLAVDERGRALLVSLLSRSVLHRFNF-KR-GVGAIKFSP 106 (893)
T ss_pred CEEEEEEccCCcceeEEeecCCceEEEEeC--CC----ceEEEEEcCCCcEEEEecccceeeEEEee-cC-ccceEEECC
Confidence 467788888865 44679999999 99 56666655 79999999988888888773 44 699999997
Q ss_pred ccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC
Q 003423 76 INCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (821)
Q Consensus 76 ~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~ 155 (821)
++ ..++++.++.+.||...... ..+|.| +.+.++..+|-+.|.++.|+. |.++|++|+.
T Consensus 107 ng-----------~~fav~~gn~lqiw~~P~~~--~~~~~p-----Fvl~r~~~g~fddi~si~Ws~---DSr~l~~gsr 165 (893)
T KOG0291|consen 107 NG-----------KFFAVGCGNLLQIWHAPGEI--KNEFNP-----FVLHRTYLGHFDDITSIDWSD---DSRLLVTGSR 165 (893)
T ss_pred CC-----------cEEEEEecceeEEEecCcch--hcccCc-----ceEeeeecCCccceeEEEecc---CCceEEeccc
Confidence 74 58888999999999976442 113333 778889999999999999998 9999999999
Q ss_pred CCcEEEEEccCCce--eEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCC
Q 003423 156 DNSIRVWDISNSSI--ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (821)
Q Consensus 156 d~~i~iwd~~~~~~--~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 233 (821)
|.++++|++...+. ...+.+|...+ .++.| ..+..-+.+-+.||.+.+|.+... |...........+.+..
T Consensus 166 D~s~rl~~v~~~k~~~~~~l~gHkd~V-vacfF---~~~~~~l~tvskdG~l~~W~~~~~---P~~~~~~~kd~eg~~d~ 238 (893)
T KOG0291|consen 166 DLSARLFGVDGNKNLFTYALNGHKDYV-VACFF---GANSLDLYTVSKDGALFVWTCDLR---PPELDKAEKDEEGSDDE 238 (893)
T ss_pred cceEEEEEeccccccceEeccCCCcce-EEEEe---ccCcceEEEEecCceEEEEEecCC---Ccccccccccccccccc
Confidence 99999999987655 44455665544 34444 457778999999999999998822 11110000000000000
Q ss_pred cceeeeccccc-------ceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEec
Q 003423 234 FKCFKLQDQQH-------TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (821)
Q Consensus 234 ~~~~~~~~~~~-------~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 306 (821)
. ...++.. ......-+......|++.+|++..+.|+++-..|...++.+.+... + ..+.-
T Consensus 239 ~---~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l-----i-----h~LSi 305 (893)
T KOG0291|consen 239 E---MDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL-----I-----HSLSI 305 (893)
T ss_pred c---ccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceE-----E-----EEeec
Confidence 0 0000000 1111222233447899999999999999999999999999998655 3 34444
Q ss_pred cceeEEEEEEc--CCEEEEEeCC-CeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC-cC
Q 003423 307 HNARVWDCCLT--DSFIITAGED-CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FL 381 (821)
Q Consensus 307 h~~~i~~v~~~--~~~l~s~~~d-g~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~-~~ 381 (821)
-..+|..+.|+ +++|+.|+.. |.+-+|+. ....+.+.++|.. .+.+++++|||+++|||+.||+|++||... -|
T Consensus 306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC 384 (893)
T KOG0291|consen 306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC 384 (893)
T ss_pred ccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc-ceeeEEECCCCcEEEeccCCCcEEEEeccCceE
Confidence 55789999998 8999888755 89999998 5667778889998 599999999999999999999999999944 44
Q ss_pred CCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEE-ecCCcEEEEEecCCCcceeeEeee
Q 003423 382 PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQ 460 (821)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~-~~~g~~~~~~i~~~~~~~~~~~~~ 460 (821)
..++.. |...|+.+.|+..+..+++ +-+|.+. .|+....+--+.++
T Consensus 385 ~vTFte------------------------------Hts~Vt~v~f~~~g~~llssSLDGtVR---AwDlkRYrNfRTft 431 (893)
T KOG0291|consen 385 FVTFTE------------------------------HTSGVTAVQFTARGNVLLSSSLDGTVR---AWDLKRYRNFRTFT 431 (893)
T ss_pred EEEecc------------------------------CCCceEEEEEEecCCEEEEeecCCeEE---eeeecccceeeeec
Confidence 555444 4567999999998866555 5577775 45444333233455
Q ss_pred ccCCcceEEEeccCCCCCCCCCCCcEEEEecCCc-cEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEE
Q 003423 461 VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKG-NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIF 539 (821)
Q Consensus 461 ~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 539 (821)
.+...+..|++..+. +.++..|+.|. .|.+|++++++... .+ ..++..+.+ .++++.+..|+
T Consensus 432 ~P~p~QfscvavD~s--------GelV~AG~~d~F~IfvWS~qTGqllD----iL---sGHEgPVs~--l~f~~~~~~La 494 (893)
T KOG0291|consen 432 SPEPIQFSCVAVDPS--------GELVCAGAQDSFEIFVWSVQTGQLLD----IL---SGHEGPVSG--LSFSPDGSLLA 494 (893)
T ss_pred CCCceeeeEEEEcCC--------CCEEEeeccceEEEEEEEeecCeeee----hh---cCCCCccee--eEEccccCeEE
Confidence 566677788888664 48888888876 89999999876521 11 122222222 24678889999
Q ss_pred EECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCccccccc--
Q 003423 540 TADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDK-- 617 (821)
Q Consensus 540 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~-- 617 (821)
+++.|.+|++||+-..... +.++ .+...++.++|+|+|+-||++.-||.|.+||.........
T Consensus 495 S~SWDkTVRiW~if~s~~~-------------vEtl--~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id 559 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSSSGT-------------VETL--EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID 559 (893)
T ss_pred eccccceEEEEEeeccCce-------------eeeE--eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc
Confidence 9999999999999765311 1122 3355699999999999999999999999999875432210
Q ss_pred cccc----ccccCcccccccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEeecCCce
Q 003423 618 SVAL----HVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRES 675 (821)
Q Consensus 618 ~~~~----~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~ 675 (821)
+.+. +........-..+. ....|.|+++ .++..|+++|.-..||||+++...+.
T Consensus 560 grkD~~~gR~~~D~~ta~~sa~-~K~Ftti~yS---aDG~~IlAgG~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 560 GRKDLSGGRKETDRITAENSAK-GKTFTTICYS---ADGKCILAGGESNSICIYDVPEGVLL 617 (893)
T ss_pred chhhccccccccceeehhhccc-CCceEEEEEc---CCCCEEEecCCcccEEEEECchhhee
Confidence 0000 00011111111122 3478999888 67899999999999999999776544
No 8
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-40 Score=336.70 Aligned_cols=536 Identities=16% Similarity=0.171 Sum_probs=374.6
Q ss_pred cceEEeecCCeEEEEECCCCeeeeEEEe-eccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCC
Q 003423 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQV-FHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (821)
Q Consensus 35 ~~~l~~g~~~~i~iwd~~t~~~~~~~~~-~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~ 113 (821)
++++++.....|.+||+.+|+....+.. .....|+++..+++. ..+.+.+.||.|+||++..+
T Consensus 34 Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~----------l~lAVGYaDGsVqif~~~s~------ 97 (888)
T KOG0306|consen 34 GRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDI----------LLLAVGYADGSVQIFSLESE------ 97 (888)
T ss_pred CcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCc----------ceEEEEecCceEEeeccCCC------
Confidence 6788887888999999999966554433 223478888877553 12345567999999998754
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccC
Q 003423 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA 193 (821)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~ 193 (821)
....++.||+..|+++.|.. .|..||+|+.|+.|.+||+-...-+.++.+|...+. .+.| ..+.
T Consensus 98 ---------~~~~tfngHK~AVt~l~fd~---~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT-~~~F---~~~~ 161 (888)
T KOG0306|consen 98 ---------EILITFNGHKAAVTTLKFDK---IGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSIT-QALF---LNGD 161 (888)
T ss_pred ---------ceeeeecccccceEEEEEcc---cCceEeecCCCccEEEEEeccceeeEEeecchHHHh-HHhc---cCCC
Confidence 45678899999999999999 999999999999999999998888889988876542 3333 2457
Q ss_pred eEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEE
Q 003423 194 LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (821)
Q Consensus 194 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s 273 (821)
.++++.+.|+.|++||+. ...++.+.-.|.+.|+++++.+ +.+++
T Consensus 162 ~~lvS~sKDs~iK~WdL~---------------------------------tqhCf~Thvd~r~Eiw~l~~~~--~~lvt 206 (888)
T KOG0306|consen 162 SFLVSVSKDSMIKFWDLE---------------------------------TQHCFETHVDHRGEIWALVLDE--KLLVT 206 (888)
T ss_pred eEEEEeccCceEEEEecc---------------------------------cceeeeEEecccceEEEEEEec--ceEEE
Confidence 899999999999999999 7888999999999999999987 78999
Q ss_pred EeCCCeEEEEecccCccc--C--CCCceeeeceEEec-------------------------------------------
Q 003423 274 VSDDRSARIWEVRAEYWK--D--SDSIEEVGSSVLYG------------------------------------------- 306 (821)
Q Consensus 274 ~s~Dg~i~iwd~~~~~~~--~--~~~~~~~~~~~~~~------------------------------------------- 306 (821)
++.|..+++|++....-. . ....+..+.....+
T Consensus 207 ~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk 286 (888)
T KOG0306|consen 207 AGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKK 286 (888)
T ss_pred EecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHH
Confidence 999999999999321110 0 00000000000000
Q ss_pred --------------------------------cceeEEEEEEc-----CCEEEEEeCCCeEEEEcCCC--ce--------
Q 003423 307 --------------------------------HNARVWDCCLT-----DSFIITAGEDCTCRVWGSDG--KQ-------- 339 (821)
Q Consensus 307 --------------------------------h~~~i~~v~~~-----~~~l~s~~~dg~i~iwd~~~--~~-------- 339 (821)
-..+|.++.+. ++.++. -.++++..+.++. +.
T Consensus 287 ~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~ 365 (888)
T KOG0306|consen 287 LKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTS 365 (888)
T ss_pred HHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccc
Confidence 01123333332 123333 4566666666621 11
Q ss_pred eeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CcCCCcccCCccccccCCCcceEEeecCCcccceeccCCC
Q 003423 340 LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSK 418 (821)
Q Consensus 340 ~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (821)
...+.+|.. .|.+++++.+...+++|+ .+.|++|+.. .++++++..
T Consensus 366 ~i~~~GHR~-dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~------------------------------- 412 (888)
T KOG0306|consen 366 NIEIGGHRS-DVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC------------------------------- 412 (888)
T ss_pred eeeeccchh-heeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc-------------------------------
Confidence 134567887 599999998877777765 5689999996 466666532
Q ss_pred CcceEEEEeecCC-eEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEE
Q 003423 419 SEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMT 497 (821)
Q Consensus 419 ~~~i~~l~f~~~~-~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~ 497 (821)
+++-+..|.|.+ ..++++.+|.+..+.+....... ..+ .+.+.+..++..+ ++..+++|+.|.+|+
T Consensus 413 -~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E---ti~-AHdgaIWsi~~~p--------D~~g~vT~saDktVk 479 (888)
T KOG0306|consen 413 -GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE---TIR-AHDGAIWSISLSP--------DNKGFVTGSADKTVK 479 (888)
T ss_pred -ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh---hhh-ccccceeeeeecC--------CCCceEEecCCcEEE
Confidence 347788888865 56667788998877776543322 222 4577888887755 558999999999999
Q ss_pred EEEecCCCCCCcceeE-Eeecc----CccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeee
Q 003423 498 IVRVVGDVHTPQLSFT-FTWSA----GIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLV 572 (821)
Q Consensus 498 i~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 572 (821)
+|++.-....+..... +.... +-+..++ ...++||+++|+++--|.++++|-+++- .+.
T Consensus 480 fWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL--~v~~Spdgk~LaVsLLdnTVkVyflDtl--------------KFf 543 (888)
T KOG0306|consen 480 FWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL--CVSVSPDGKLLAVSLLDNTVKVYFLDTL--------------KFF 543 (888)
T ss_pred EEeEEEEeccCcccceeeeeccceEEeccccEE--EEEEcCCCcEEEEEeccCeEEEEEecce--------------eee
Confidence 9997532111111100 11111 1112222 2347899999999999999999999876 333
Q ss_pred EEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccCCcceEEEEEEecCCCc
Q 003423 573 AEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQ 652 (821)
Q Consensus 573 ~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~ 652 (821)
-.+ .+|.-+|.|++.|||++++++||.|.+|++|-++- +.....+. +| .+.|+++.|.| ..
T Consensus 544 lsL-YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF-------------GDCHKS~f-AH-dDSvm~V~F~P---~~ 604 (888)
T KOG0306|consen 544 LSL-YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF-------------GDCHKSFF-AH-DDSVMSVQFLP---KT 604 (888)
T ss_pred eee-cccccceeEEeccCCcCeEEeccCCCceEEecccc-------------chhhhhhh-cc-cCceeEEEEcc---cc
Confidence 343 69999999999999999999999999999998872 33334443 77 78999999995 55
Q ss_pred eEEEEecCCCeEEEEEeecCCceeeeeeee-eeeeeeeeeeeccCCCccCCCCCeEEEeeecccEEEEECccccEEEEE
Q 003423 653 TEIRSTGGDGCICYLEYDKDRESLEFIGMK-QVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQI 730 (821)
Q Consensus 653 ~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~vW~~~~~~~l~~i 730 (821)
..+.|+|+||.++.|+-+.-..-..+.+++ .+..+ ...+.|++++++++|.++.+|..+....++.-
T Consensus 605 ~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cL-----------av~~~G~~vvs~shD~sIRlwE~tde~~~lEe 672 (888)
T KOG0306|consen 605 HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCL-----------AVSPNGSFVVSSSHDKSIRLWERTDEILILEE 672 (888)
T ss_pred eeEEEecCcceEEeechhhhhhheeeccchheeeee-----------EEcCCCCeEEeccCCceeEeeeccCcceeeeh
Confidence 779999999999999886532211111111 11111 11245788999999999999997765555443
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.4e-39 Score=328.99 Aligned_cols=543 Identities=15% Similarity=0.205 Sum_probs=374.8
Q ss_pred CCcceeeccce---------eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEec
Q 003423 5 DLSEWRLDVGQ---------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (821)
Q Consensus 5 ~i~~w~~~~~~---------~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~ 74 (821)
.+.+||+++++ ...+|||++-+ || ..+||+|. ||.|+||+..++.++.++..|+. .|+.+.|.
T Consensus 44 ~vn~WdlRtge~~~~l~~~~~k~evt~l~~~--~d----~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~-AVt~l~fd 116 (888)
T KOG0306|consen 44 QVNIWDLRTGEIEKKLILLKKKAEVTCLRSS--DD----ILLLAVGYADGSVQIFSLESEEILITFNGHKA-AVTTLKFD 116 (888)
T ss_pred cEeEEeeecchhhhhhhhhcccceEEEeecc--CC----cceEEEEecCceEEeeccCCCceeeeeccccc-ceEEEEEc
Confidence 57899999994 33589999999 88 67888898 99999999999999999988777 79999999
Q ss_pred cccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEE
Q 003423 75 FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (821)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~ 154 (821)
..+ .+++..+.|+.|.+||+-.+ .-...+.||++.|+.+-|.. +.++|++.+
T Consensus 117 ~~G----------~rlaSGskDt~IIvwDlV~E---------------~Gl~rL~GHkd~iT~~~F~~---~~~~lvS~s 168 (888)
T KOG0306|consen 117 KIG----------TRLASGSKDTDIIVWDLVGE---------------EGLFRLRGHKDSITQALFLN---GDSFLVSVS 168 (888)
T ss_pred ccC----------ceEeecCCCccEEEEEeccc---------------eeeEEeecchHHHhHHhccC---CCeEEEEec
Confidence 775 23344445899999999854 34678999999999999997 788999999
Q ss_pred CCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCC---C
Q 003423 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS---S 231 (821)
Q Consensus 155 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---~ 231 (821)
.|+.|++||+.+..+..+.-.+. ..+|++.+ ++.++++++.|+.+.+|++..+.-.............+. .
T Consensus 169 KDs~iK~WdL~tqhCf~Thvd~r-~Eiw~l~~-----~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rq 242 (888)
T KOG0306|consen 169 KDSMIKFWDLETQHCFETHVDHR-GEIWALVL-----DEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQ 242 (888)
T ss_pred cCceEEEEecccceeeeEEeccc-ceEEEEEE-----ecceEEEEecCCceEEEEeecccccccccccceeeccceeeec
Confidence 99999999999999988766554 35888887 347899999999999999952211100000000000000 0
Q ss_pred CCcceeeeccccc----------ceeeEEEEec-----------------C--------------------------CCc
Q 003423 232 SDFKCFKLQDQQH----------TAVNLFRLVG-----------------H--------------------------EGS 258 (821)
Q Consensus 232 ~~~~~~~~~~~~~----------~~~~~~~~~~-----------------h--------------------------~~~ 258 (821)
+.-+.+.+..... ..-..+.+.. | ...
T Consensus 243 sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~k 322 (888)
T KOG0306|consen 243 SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAK 322 (888)
T ss_pred cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhh
Confidence 0000000000000 0000111100 0 012
Q ss_pred EEEEEEcCCCC---EEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEEEc
Q 003423 259 IFRIEWSSCGS---KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWG 334 (821)
Q Consensus 259 I~~l~~s~~~~---~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd 334 (821)
|.++.+.|.++ .|++ -.+.++..+.+..... .+.....+....+.||...|.+++++ ++.++..+..+.+++|+
T Consensus 323 iks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~-~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn 400 (888)
T KOG0306|consen 323 IKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGK-TSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWN 400 (888)
T ss_pred eeEEEEEecCCcceeEEE-eecCceEEEEeccCCC-CCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEE
Confidence 33444444332 2333 3445566665554111 00001111124778999999999999 45555556678999999
Q ss_pred C-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC-cCCCcccCCccccccCCCcceEEeecCCcccce
Q 003423 335 S-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQI 412 (821)
Q Consensus 335 ~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (821)
. +.++++++... .+.+..|.|.++++++|...|.+.++|+.. ..+.+
T Consensus 401 ~~t~kciRTi~~~---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Et---------------------------- 449 (888)
T KOG0306|consen 401 RDTLKCIRTITCG---YILASKFVPGDRYIVLGTKNGELQVFDLASASLVET---------------------------- 449 (888)
T ss_pred ccCcceeEEeccc---cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhh----------------------------
Confidence 9 59999999764 478889999999999999999999999944 22222
Q ss_pred eccCCCCcceEEEEeecCCeEEEEec-CCcEEEEEecC--C--Ccc-e---eeEeeeccCCcceEEEeccCCCCCCCCCC
Q 003423 413 RLTDSKSEYVRCLHLTSEDTLYIATN-HGYLYHTKLCD--M--DSV-N---WNKILQVSEGMPIICMDLLSNEPKYPCGI 483 (821)
Q Consensus 413 ~~~~~~~~~i~~l~f~~~~~~l~~~~-~g~~~~~~i~~--~--~~~-~---~~~~~~~~~~~~i~~~~~~~~~~~~s~~~ 483 (821)
...|++.|.+++.+|++.-+++.+ +..+..|.+.- . .+. + ..+....+....+.|+.++| +
T Consensus 450 --i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp--------d 519 (888)
T KOG0306|consen 450 --IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP--------D 519 (888)
T ss_pred --hhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC--------C
Confidence 235678899999999997766654 33344332211 1 111 0 11112233456777877754 5
Q ss_pred CcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccC
Q 003423 484 DDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYES 563 (821)
Q Consensus 484 ~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 563 (821)
++++|++--|.++++|-+++-.. -+.... .++-...+..+|++++++||+.|..|++|-++-+
T Consensus 520 gk~LaVsLLdnTVkVyflDtlKF------flsLYG---HkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-------- 582 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLKF------FLSLYG---HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-------- 582 (888)
T ss_pred CcEEEEEeccCeEEEEEecceee------eeeecc---cccceeEEeccCCcCeEEeccCCCceEEeccccc--------
Confidence 69999999999999999887432 111111 1112223456788899999999999999999888
Q ss_pred CccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccCCcceEEE
Q 003423 564 SKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTL 643 (821)
Q Consensus 564 ~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i 643 (821)
.|.+.+ .+|+..|+++.|.|...++.+++.||.|+-||-. .+..+.++. .| ...|-|+
T Consensus 583 ------DCHKS~-fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~-------------kFe~iq~L~-~H-~~ev~cL 640 (888)
T KOG0306|consen 583 ------DCHKSF-FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE-------------KFEEIQKLD-GH-HSEVWCL 640 (888)
T ss_pred ------hhhhhh-hcccCceeEEEEcccceeEEEecCcceEEeechh-------------hhhhheeec-cc-hheeeee
Confidence 676776 7999999999999999999999999999999976 344455665 45 4579999
Q ss_pred EEEecCCCceEEEEecCCCeEEEEEeecCC
Q 003423 644 SVAKLRSNQTEIRSTGGDGCICYLEYDKDR 673 (821)
Q Consensus 644 ~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~ 673 (821)
+.. +++.+++|+|+|-+||+|+-+.+.
T Consensus 641 av~---~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 641 AVS---PNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred EEc---CCCCeEEeccCCceeEeeeccCcc
Confidence 888 678999999999999999986643
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.9e-41 Score=315.29 Aligned_cols=320 Identities=19% Similarity=0.263 Sum_probs=270.3
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|.++|.|++|+ |+ +..|++|+ |.++++||+.|-.++.+.+.|+. -|.+++|+|++ + .+....
T Consensus 114 H~e~Vl~~~fs--p~----g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~-WVlcvawsPDg-------k---~iASG~ 176 (480)
T KOG0271|consen 114 HGEAVLSVQFS--PT----GSRLVTGSGDTTVRLWDLDTETPLFTCKGHKN-WVLCVAWSPDG-------K---KIASGS 176 (480)
T ss_pred CCCcEEEEEec--CC----CceEEecCCCceEEeeccCCCCcceeecCCcc-EEEEEEECCCc-------c---hhhccc
Confidence 88999999999 98 78889888 79999999999999999998777 69999999774 2 233334
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeec--CCCCCEEEEEECCCcEEEEEccCCceeEE
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV--CNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~--~~~~~~l~t~~~d~~i~iwd~~~~~~~~~ 172 (821)
-+|+|++||-+.+. .....+.+|..||++++|.|. .+..++||+++.||+|+|||+..+.++..
T Consensus 177 ~dg~I~lwdpktg~--------------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 177 KDGSIRLWDPKTGQ--------------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred cCCeEEEecCCCCC--------------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE
Confidence 58999999988664 456789999999999999883 24567999999999999999999999999
Q ss_pred EccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE
Q 003423 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (821)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (821)
+.+|..+ +.++++ ....+|++|+.|++|++|+.. .+....++
T Consensus 243 lsgHT~~-VTCvrw----GG~gliySgS~DrtIkvw~a~---------------------------------dG~~~r~l 284 (480)
T KOG0271|consen 243 LSGHTAS-VTCVRW----GGEGLIYSGSQDRTIKVWRAL---------------------------------DGKLCREL 284 (480)
T ss_pred eccCccc-eEEEEE----cCCceEEecCCCceEEEEEcc---------------------------------chhHHHhh
Confidence 8888754 445554 356799999999999999988 67788899
Q ss_pred ecCCCcEEEEEEc-----------CCC-------------------------CEEEEEeCCCeEEEEecccCcccCCCCc
Q 003423 253 VGHEGSIFRIEWS-----------SCG-------------------------SKLVSVSDDRSARIWEVRAEYWKDSDSI 296 (821)
Q Consensus 253 ~~h~~~I~~l~~s-----------~~~-------------------------~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 296 (821)
+||...|+.|+.+ |.+ ..|+||++|.++.+|+....+.
T Consensus 285 kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk------ 358 (480)
T KOG0271|consen 285 KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK------ 358 (480)
T ss_pred cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc------
Confidence 9999999999987 222 3599999999999999776542
Q ss_pred eeeeceEEeccceeEEEEEEcC--CEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 003423 297 EEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIK 373 (821)
Q Consensus 297 ~~~~~~~~~~h~~~i~~v~~~~--~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~ 373 (821)
++ ..+.+|+.-|..+.|+| .++++++.|..|++|+. +|+.+.++++|-+ .|..++|+.|.++|++|+.|.+++
T Consensus 359 -pi--~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~-~VYqvawsaDsRLlVS~SkDsTLK 434 (480)
T KOG0271|consen 359 -PI--TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA-AVYQVAWSADSRLLVSGSKDSTLK 434 (480)
T ss_pred -ch--hhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc-eeEEEEeccCccEEEEcCCCceEE
Confidence 22 58899999999999994 79999999999999999 8999999999999 799999999999999999999999
Q ss_pred EEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEE
Q 003423 374 VHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLY 443 (821)
Q Consensus 374 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~ 443 (821)
+|+++++.+. ..+.+|.+.|-++.++|||..++++...+++
T Consensus 435 vw~V~tkKl~-----------------------------~DLpGh~DEVf~vDwspDG~rV~sggkdkv~ 475 (480)
T KOG0271|consen 435 VWDVRTKKLK-----------------------------QDLPGHADEVFAVDWSPDGQRVASGGKDKVL 475 (480)
T ss_pred EEEeeeeeec-----------------------------ccCCCCCceEEEEEecCCCceeecCCCceEE
Confidence 9999664221 1233456779999999999999888655554
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-35 Score=302.24 Aligned_cols=561 Identities=13% Similarity=0.149 Sum_probs=394.6
Q ss_pred EEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEE
Q 003423 22 ALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKL 101 (821)
Q Consensus 22 ~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i 101 (821)
.+.|+ || +.-+++..++.|.|+|+...+- .++..-.+.+|.+++.+|++ ..++++-..|...+
T Consensus 19 nl~ft--~d----G~sviSPvGNrvsv~dLknN~S-~Tl~~e~~~NI~~ialSp~g----------~lllavdE~g~~~l 81 (893)
T KOG0291|consen 19 NLVFT--KD----GNSVISPVGNRVSVFDLKNNKS-YTLPLETRYNITRIALSPDG----------TLLLAVDERGRALL 81 (893)
T ss_pred cEEEC--CC----CCEEEeccCCEEEEEEccCCcc-eeEEeecCCceEEEEeCCCc----------eEEEEEcCCCcEEE
Confidence 57888 88 7889999999999999987553 34444456689999999775 34555556778888
Q ss_pred EEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce--------eEEE
Q 003423 102 FELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--------ILEV 173 (821)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~--------~~~~ 173 (821)
.++... ..++.+. .+..|-|+.||| +|+++|+|. .+.+.||....... .++.
T Consensus 82 vs~~~r---------------~Vlh~f~-fk~~v~~i~fSP---ng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~ 141 (893)
T KOG0291|consen 82 VSLLSR---------------SVLHRFN-FKRGVGAIKFSP---NGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTY 141 (893)
T ss_pred Eecccc---------------eeeEEEe-ecCccceEEECC---CCcEEEEEe-cceeEEEecCcchhcccCcceEeeee
Confidence 777633 2334333 457899999999 999999887 57899998754322 1222
Q ss_pred ccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe
Q 003423 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (821)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (821)
.+|-. -+.++.+ +.|..++++|+.|-..++|.+... +.-..+.+.
T Consensus 142 ~g~fd-di~si~W---s~DSr~l~~gsrD~s~rl~~v~~~-------------------------------k~~~~~~l~ 186 (893)
T KOG0291|consen 142 LGHFD-DITSIDW---SDDSRLLVTGSRDLSARLFGVDGN-------------------------------KNLFTYALN 186 (893)
T ss_pred cCCcc-ceeEEEe---ccCCceEEeccccceEEEEEeccc-------------------------------cccceEecc
Confidence 33333 2445555 578999999999999999999811 223456778
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCccc--C-------------CCCcee-------e--eceEEeccce
Q 003423 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK--D-------------SDSIEE-------V--GSSVLYGHNA 309 (821)
Q Consensus 254 ~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~--~-------------~~~~~~-------~--~~~~~~~h~~ 309 (821)
||++.|.+.-|..+...++|.+.||.+.+|........ . -.+.++ . ....+.....
T Consensus 187 gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~ 266 (893)
T KOG0291|consen 187 GHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSS 266 (893)
T ss_pred CCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccccc
Confidence 99999999999999999999999999999987721100 0 000000 0 0112223347
Q ss_pred eEEEEEEcC--CEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCC-CcEEEEEcCCcCCCcc
Q 003423 310 RVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD-SAIKVHQFQAFLPGSL 385 (821)
Q Consensus 310 ~i~~v~~~~--~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~d-g~I~iwd~~~~~~~~~ 385 (821)
.|++.+|++ +.|+++-..|...++++ +-.+++.+.-... .|..++|+..|.+||.|+.. |.+.+|+.....
T Consensus 267 kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs---- 341 (893)
T KOG0291|consen 267 KVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES---- 341 (893)
T ss_pred ceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEEeeccc----
Confidence 799999993 78999999999999999 6677888877666 59999999999999998865 889999985421
Q ss_pred cCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEec-CCcEEEEEecCCCcceeeEeeeccCC
Q 003423 386 ESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN-HGYLYHTKLCDMDSVNWNKILQVSEG 464 (821)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~-~g~~~~~~i~~~~~~~~~~~~~~~~~ 464 (821)
-+...++|...+.+++++|||.++++.. +|++ ++|+...... -+.-.++.
T Consensus 342 -------------------------YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKV---KvWn~~SgfC-~vTFteHt 392 (893)
T KOG0291|consen 342 -------------------------YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKV---KVWNTQSGFC-FVTFTEHT 392 (893)
T ss_pred -------------------------eeeeccccccceeeEEECCCCcEEEeccCCCcE---EEEeccCceE-EEEeccCC
Confidence 0122345567799999999998888764 4555 5777766542 23334456
Q ss_pred cceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCC
Q 003423 465 MPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPK 544 (821)
Q Consensus 465 ~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 544 (821)
..++.+.+... ++.+++.+.||+++.||+..... --++....+.+..+ .+..|.|.++++|+.|
T Consensus 393 s~Vt~v~f~~~--------g~~llssSLDGtVRAwDlkRYrN------fRTft~P~p~Qfsc--vavD~sGelV~AG~~d 456 (893)
T KOG0291|consen 393 SGVTAVQFTAR--------GNVLLSSSLDGTVRAWDLKRYRN------FRTFTSPEPIQFSC--VAVDPSGELVCAGAQD 456 (893)
T ss_pred CceEEEEEEec--------CCEEEEeecCCeEEeeeecccce------eeeecCCCceeeeE--EEEcCCCCEEEeeccc
Confidence 77777777654 48999999999999999876443 11222222222222 2355778999999998
Q ss_pred C-cEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCccccccccccccc
Q 003423 545 G-RLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHV 623 (821)
Q Consensus 545 g-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~ 623 (821)
. .|.+|++.++ +++..+ .+|.++|.+++|+|++..|++||.|.+|++||+-..
T Consensus 457 ~F~IfvWS~qTG--------------qllDiL-sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s----------- 510 (893)
T KOG0291|consen 457 SFEIFVWSVQTG--------------QLLDIL-SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS----------- 510 (893)
T ss_pred eEEEEEEEeecC--------------eeeehh-cCCCCcceeeEEccccCeEEeccccceEEEEEeecc-----------
Confidence 8 6999999998 677776 899999999999999999999999999999998532
Q ss_pred ccCcccccccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEeecCCceeeeeeeeeeee----eeeeeeec-cCC-
Q 003423 624 EVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKE----LSLIQSVS-AEN- 697 (821)
Q Consensus 624 ~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~- 697 (821)
.....++. + ..-|+.++|. +++..|+.+.-||.|.+|+.....+.....|...+.. ...+.+-+ ..+
T Consensus 511 -~~~vEtl~--i-~sdvl~vsfr---PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K 583 (893)
T KOG0291|consen 511 -SGTVETLE--I-RSDVLAVSFR---PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGK 583 (893)
T ss_pred -CceeeeEe--e-ccceeEEEEc---CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCC
Confidence 11122332 1 3379999999 5668899999999999999965433211111111110 00000000 001
Q ss_pred ----CccCCCCCeEEEeeecccEEEEECccccEEE--EEeeCCCCccce
Q 003423 698 ----NSIDLASCNYAAGFASTDFIIWNLITEAKVV--QIPCGGWRRPHS 740 (821)
Q Consensus 698 ----~~~~~~~~~l~~g~~~~~~~vW~~~~~~~l~--~i~cgg~~r~~~ 740 (821)
-....++.++++|+.+..|++|+..++-.+- +|.| .|+|.
T Consensus 584 ~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~---N~sLd 629 (893)
T KOG0291|consen 584 TFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISD---NRSLD 629 (893)
T ss_pred ceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEecc---ccchh
Confidence 1123568899999999999999998887665 4444 35554
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.5e-39 Score=310.04 Aligned_cols=279 Identities=22% Similarity=0.335 Sum_probs=253.5
Q ss_pred eeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc
Q 003423 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (821)
Q Consensus 17 ~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g 95 (821)
..||+.+.|+ +| +..|++|+ +|.++||+..++..+.++..|.. +|-++.|+|.. ++ ..+..++.
T Consensus 175 ~rPis~~~fS--~d----s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~-~v~~~~fhP~~----~~----~~lat~s~ 239 (459)
T KOG0272|consen 175 TRPISGCSFS--RD----SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTS-RVGAAVFHPVD----SD----LNLATASA 239 (459)
T ss_pred CCcceeeEee--cC----CCeEEEeecCCceeEeecCCcceeEEEecccc-ceeeEEEccCC----Cc----cceeeecc
Confidence 4789999999 88 78889888 99999999999999999998776 79999999762 12 24666778
Q ss_pred CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEcc
Q 003423 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (821)
Q Consensus 96 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~ 175 (821)
||++++|+++.+ .++..+.+|...|..++|+| +|++|+|++.|.+-++||+.++..+....+
T Consensus 240 Dgtvklw~~~~e---------------~~l~~l~gH~~RVs~VafHP---sG~~L~TasfD~tWRlWD~~tk~ElL~QEG 301 (459)
T KOG0272|consen 240 DGTVKLWKLSQE---------------TPLQDLEGHLARVSRVAFHP---SGKFLGTASFDSTWRLWDLETKSELLLQEG 301 (459)
T ss_pred CCceeeeccCCC---------------cchhhhhcchhhheeeeecC---CCceeeecccccchhhcccccchhhHhhcc
Confidence 999999999864 46788999999999999999 999999999999999999999988877777
Q ss_pred CcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecC
Q 003423 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (821)
Q Consensus 176 ~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 255 (821)
|... +++++| .+||.++++|+.|..-+|||++ ++..+..+.||
T Consensus 302 Hs~~-v~~iaf---~~DGSL~~tGGlD~~~RvWDlR---------------------------------tgr~im~L~gH 344 (459)
T KOG0272|consen 302 HSKG-VFSIAF---QPDGSLAATGGLDSLGRVWDLR---------------------------------TGRCIMFLAGH 344 (459)
T ss_pred cccc-cceeEe---cCCCceeeccCccchhheeecc---------------------------------cCcEEEEeccc
Confidence 7664 788888 5899999999999999999999 88899999999
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEE
Q 003423 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRV 332 (821)
Q Consensus 256 ~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~i 332 (821)
...|.+|+|+|+|..|||||.|++++|||++.... . ..+.+|..-|+.++|. +.+|+|++.|+++++
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-----l-----y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ki 414 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-----L-----YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKI 414 (459)
T ss_pred ccceeeEeECCCceEEeecCCCCcEEEeeeccccc-----c-----eecccccchhhheEecccCCeEEEEcccCcceee
Confidence 99999999999999999999999999999998655 3 6889999999999998 589999999999999
Q ss_pred EcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 003423 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (821)
Q Consensus 333 wd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd 376 (821)
|.. +..+++++.+|.++ |.++++++++..++|++.|.++++|.
T Consensus 415 Ws~~~~~~~ksLaGHe~k-V~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 415 WSTRTWSPLKSLAGHEGK-VISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ecCCCcccchhhcCCccc-eEEEEeccCCceEEEeccCceeeecc
Confidence 999 78999999999995 99999999999999999999999995
No 13
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-35 Score=298.14 Aligned_cols=460 Identities=15% Similarity=0.227 Sum_probs=327.1
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
+...|.++.|+ |. ..+++++- .|.|.|||.++..+++.+++.+- +|....|-... +.+++.+
T Consensus 12 rSdRVKsVd~H--Pt----ePw~la~LynG~V~IWnyetqtmVksfeV~~~-PvRa~kfiaRk----------nWiv~Gs 74 (794)
T KOG0276|consen 12 RSDRVKSVDFH--PT----EPWILAALYNGDVQIWNYETQTMVKSFEVSEV-PVRAAKFIARK----------NWIVTGS 74 (794)
T ss_pred cCCceeeeecC--CC----CceEEEeeecCeeEEEecccceeeeeeeeccc-chhhheeeecc----------ceEEEec
Confidence 56779999999 97 78888877 89999999999999999998554 78887776431 2466666
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc-eeEEE
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEV 173 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~-~~~~~ 173 (821)
.|..||||+..+ ++.++.+..|++-|++++.+| ...+++|++.|-+|++||.+.+- +.+.+
T Consensus 75 DD~~IrVfnynt---------------~ekV~~FeAH~DyIR~iavHP---t~P~vLtsSDDm~iKlW~we~~wa~~qtf 136 (794)
T KOG0276|consen 75 DDMQIRVFNYNT---------------GEKVKTFEAHSDYIRSIAVHP---TLPYVLTSSDDMTIKLWDWENEWACEQTF 136 (794)
T ss_pred CCceEEEEeccc---------------ceeeEEeeccccceeeeeecC---CCCeEEecCCccEEEEeeccCceeeeeEE
Confidence 789999999985 467899999999999999999 99999999999999999998764 45666
Q ss_pred ccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe
Q 003423 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (821)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (821)
.+|.. .+..++|. +.|.+.+|+++.|++|+||.+. +..+.++++
T Consensus 137 eGH~H-yVMqv~fn--PkD~ntFaS~sLDrTVKVWslg---------------------------------s~~~nfTl~ 180 (794)
T KOG0276|consen 137 EGHEH-YVMQVAFN--PKDPNTFASASLDRTVKVWSLG---------------------------------SPHPNFTLE 180 (794)
T ss_pred cCcce-EEEEEEec--CCCccceeeeeccccEEEEEcC---------------------------------CCCCceeee
Confidence 66654 56677774 4577899999999999999998 778889999
Q ss_pred cCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEEeCCCe
Q 003423 254 GHEGSIFRIEWSSCG--SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCT 329 (821)
Q Consensus 254 ~h~~~I~~l~~s~~~--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~~~dg~ 329 (821)
||+..|+|+.+-+.| .+|+||++|.+|+|||.++..+ + .++.||...|..++|+| ..++||++||+
T Consensus 181 gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C-----V-----~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT 250 (794)
T KOG0276|consen 181 GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC-----V-----QTLEGHTNNVSFVFFHPELPIIISGSEDGT 250 (794)
T ss_pred ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHH-----H-----HHhhcccccceEEEecCCCcEEEEecCCcc
Confidence 999999999998855 6999999999999999999776 5 69999999999999996 79999999999
Q ss_pred EEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc-CCcCCCcccCCccccccCCCcceEEeecCC
Q 003423 330 CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPN 407 (821)
Q Consensus 330 i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (821)
+|+|+. +-+...++.-.-. .+|+++-.+.++.++.|..+|.|.+ .+ +......+.. ...+.+....++.......
T Consensus 251 vriWhs~Ty~lE~tLn~gle-RvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~-~gKIiwa~~~ei~~~~~ks 327 (794)
T KOG0276|consen 251 VRIWNSKTYKLEKTLNYGLE-RVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDS-NGKIIWAVHSEIQAVNLKS 327 (794)
T ss_pred EEEecCcceehhhhhhcCCc-eEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecC-CccEEEEcCceeeeeecee
Confidence 999998 5566666766666 4999999998888999988887755 33 2222111111 1111111112221111100
Q ss_pred c------------ccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCC
Q 003423 408 F------------SEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSN 475 (821)
Q Consensus 408 ~------------~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 475 (821)
. +-..+.+..-+-....++.+|+|++++.+++|.-..+.....++..+ +. +.++.+.
T Consensus 328 ~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~RnK~f-----G~------~~eFvw~ 396 (794)
T KOG0276|consen 328 VGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRNKAF-----GS------GLEFVWA 396 (794)
T ss_pred ccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehhhccc-----cc------ceeEEEc
Confidence 0 01112222233456788899999999999999865443222212110 11 1222221
Q ss_pred CCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCC
Q 003423 476 EPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (821)
Q Consensus 476 ~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 555 (821)
.+.+..++-..++.|+++. +.+.+. .+.++.. +..--|..|+....++.+++||+.+.
T Consensus 397 ------~dsne~avRes~~~vki~k--nfke~k------si~~~~~--------~e~i~gg~Llg~~ss~~~~fydW~~~ 454 (794)
T KOG0276|consen 397 ------ADSNEFAVRESNGNVKIFK--NFKEHK------SIRPDMS--------AEGIFGGPLLGVRSSDFLCFYDWESG 454 (794)
T ss_pred ------CCCCeEEEEecCCceEEEe--cceecc------ccccccc--------eeeecCCceEEEEeCCeEEEEEcccc
Confidence 2446777777788999883 222211 1122111 11111344455555667999999988
Q ss_pred CCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCc
Q 003423 556 FSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~ 611 (821)
+++... .-....+.|+.+|.++++++.+ +.+++.++.
T Consensus 455 --------------~lVrrI----~v~~k~v~w~d~g~lVai~~d~-Sfyil~~n~ 491 (794)
T KOG0276|consen 455 --------------ELVRRI----EVTSKHVYWSDNGELVAIAGDD-SFYILKFNA 491 (794)
T ss_pred --------------eEEEEE----eeccceeEEecCCCEEEEEecC-ceeEEEecH
Confidence 666665 3334678999999999988776 455555443
No 14
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.1e-37 Score=294.85 Aligned_cols=282 Identities=18% Similarity=0.321 Sum_probs=240.1
Q ss_pred CCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEE
Q 003423 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWK 209 (821)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd 209 (821)
+-+.+|..+.|++ +++.||||+-+|.+++|+..+...+.++.+|... +-.+.|++.. ++..+|+++.||.+++|+
T Consensus 173 gd~rPis~~~fS~---ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~-v~~~~fhP~~-~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 173 GDTRPISGCSFSR---DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSR-VGAAVFHPVD-SDLNLATASADGTVKLWK 247 (459)
T ss_pred cCCCcceeeEeec---CCCeEEEeecCCceeEeecCCcceeEEEeccccc-eeeEEEccCC-CccceeeeccCCceeeec
Confidence 4567999999999 9999999999999999999999999999888764 4566676543 577999999999999999
Q ss_pred cccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCc
Q 003423 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (821)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~ 289 (821)
+. +..++..+.||...|..++|+|+|++|+|++.|.+-|+||+.++.
T Consensus 248 ~~---------------------------------~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ 294 (459)
T KOG0272|consen 248 LS---------------------------------QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS 294 (459)
T ss_pred cC---------------------------------CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccch
Confidence 98 557888999999999999999999999999999999999999976
Q ss_pred ccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEE
Q 003423 290 WKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366 (821)
Q Consensus 290 ~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg 366 (821)
. . ....||...|.+++|. +..++|||.|..-+|||+ +|+++..+.+|.+ .|.+++|+|+|-.||||
T Consensus 295 E-----l-----L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATg 363 (459)
T KOG0272|consen 295 E-----L-----LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATG 363 (459)
T ss_pred h-----h-----HhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeec
Confidence 5 3 4788999999999998 689999999999999999 8999999999998 79999999999999999
Q ss_pred eCCCcEEEEEcCCcC-CCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEE
Q 003423 367 GFDSAIKVHQFQAFL-PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (821)
Q Consensus 367 ~~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~ 445 (821)
+.|++++|||++... +.++ ..|.+.|+
T Consensus 364 s~Dnt~kVWDLR~r~~ly~i------------------------------pAH~nlVS---------------------- 391 (459)
T KOG0272|consen 364 SSDNTCKVWDLRMRSELYTI------------------------------PAHSNLVS---------------------- 391 (459)
T ss_pred CCCCcEEEeeecccccceec------------------------------ccccchhh----------------------
Confidence 999999999996420 0000 00000000
Q ss_pred EecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceee
Q 003423 446 KLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLL 525 (821)
Q Consensus 446 ~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (821)
.+.+.|.
T Consensus 392 -------------------------------------------------------------------~Vk~~p~------ 398 (459)
T KOG0272|consen 392 -------------------------------------------------------------------QVKYSPQ------ 398 (459)
T ss_pred -------------------------------------------------------------------heEeccc------
Confidence 2222221
Q ss_pred eeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEE
Q 003423 526 GTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLV 605 (821)
Q Consensus 526 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~ 605 (821)
.|.+|++++.|++++||..... .+.+.+ .+|...|.++++++|++++++++.|.+++
T Consensus 399 --------~g~fL~TasyD~t~kiWs~~~~--------------~~~ksL-aGHe~kV~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 399 --------EGYFLVTASYDNTVKIWSTRTW--------------SPLKSL-AGHEGKVISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred --------CCeEEEEcccCcceeeecCCCc--------------ccchhh-cCCccceEEEEeccCCceEEEeccCceee
Confidence 2588999999999999988777 566665 89999999999999999999999999999
Q ss_pred EEe
Q 003423 606 LFP 608 (821)
Q Consensus 606 iw~ 608 (821)
+|.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 995
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-35 Score=268.11 Aligned_cols=284 Identities=16% Similarity=0.283 Sum_probs=244.2
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEee-cCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g-~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|.+.|.++.|+ +| .++++++ .||.+.|||.-|...++.++.... -|..++++|.+ ..++++
T Consensus 54 H~~Ki~~~~ws--~D----sr~ivSaSqDGklIvWDs~TtnK~haipl~s~-WVMtCA~sPSg-----------~~VAcG 115 (343)
T KOG0286|consen 54 HLNKIYAMDWS--TD----SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS-WVMTCAYSPSG-----------NFVACG 115 (343)
T ss_pred cccceeeeEec--CC----cCeEEeeccCCeEEEEEcccccceeEEecCce-eEEEEEECCCC-----------CeEEec
Confidence 88999999999 99 5565555 599999999999988888887555 79999999774 477777
Q ss_pred c-CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEE
Q 003423 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (821)
Q Consensus 95 g-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 173 (821)
| |+...||++...+.+. ..+..+.+.+|.+-+.|+.|.+ ...|+|++.|.+..+||+++++.+..+
T Consensus 116 GLdN~Csiy~ls~~d~~g---------~~~v~r~l~gHtgylScC~f~d----D~~ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEG---------NVRVSRELAGHTGYLSCCRFLD----DNHILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred CcCceeEEEecccccccc---------cceeeeeecCccceeEEEEEcC----CCceEecCCCceEEEEEcccceEEEEe
Confidence 7 8999999998653111 2356678999999999999985 456899999999999999999999999
Q ss_pred ccCcceeEEEEeeccCCc-cCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE
Q 003423 174 HSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (821)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (821)
.+|... +.++.+ +| +.+.+++|+-|+..++||++ ...+.++|
T Consensus 183 ~GH~gD-V~slsl---~p~~~ntFvSg~cD~~aklWD~R---------------------------------~~~c~qtF 225 (343)
T KOG0286|consen 183 HGHTGD-VMSLSL---SPSDGNTFVSGGCDKSAKLWDVR---------------------------------SGQCVQTF 225 (343)
T ss_pred cCCccc-EEEEec---CCCCCCeEEecccccceeeeecc---------------------------------CcceeEee
Confidence 988875 456666 34 88999999999999999999 77899999
Q ss_pred ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeE
Q 003423 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (821)
Q Consensus 253 ~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i 330 (821)
.||+..|++|+|.|+|.-++||++|++.|+||++..+. +.. ..-..-..+|++++|+ +++|++|..|.++
T Consensus 226 ~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-----~a~---ys~~~~~~gitSv~FS~SGRlLfagy~d~~c 297 (343)
T KOG0286|consen 226 EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-----LAV---YSHDSIICGITSVAFSKSGRLLFAGYDDFTC 297 (343)
T ss_pred cccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-----Eee---eccCcccCCceeEEEcccccEEEeeecCCce
Confidence 99999999999999999999999999999999998755 211 1222234578999998 8999999999999
Q ss_pred EEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 003423 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (821)
Q Consensus 331 ~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd 376 (821)
.+||. .++.+..+.+|.++ |.++..+|||.-|+||+.|..+++|.
T Consensus 298 ~vWDtlk~e~vg~L~GHeNR-vScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 298 NVWDTLKGERVGVLAGHENR-VSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEeeccccceEEEeeccCCe-eEEEEECCCCcEEEecchhHheeecC
Confidence 99998 89999999999995 99999999999999999999999994
No 16
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-32 Score=286.33 Aligned_cols=303 Identities=19% Similarity=0.308 Sum_probs=246.8
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
....|..|+|+ |. +.+++++- .|.|++||.+-+.++.++..|++ +|.++.|+|+. .+++.+
T Consensus 8 kSsRvKglsFH--P~----rPwILtslHsG~IQlWDYRM~tli~rFdeHdG-pVRgv~FH~~q-----------plFVSG 69 (1202)
T KOG0292|consen 8 KSSRVKGLSFH--PK----RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDG-PVRGVDFHPTQ-----------PLFVSG 69 (1202)
T ss_pred ccccccceecC--CC----CCEEEEeecCceeeeehhhhhhHHhhhhccCC-ccceeeecCCC-----------CeEEec
Confidence 35679999999 98 89999988 89999999999999999999887 89999999874 466666
Q ss_pred c-CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEE
Q 003423 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (821)
Q Consensus 95 g-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 173 (821)
| |..|++|+.+.. +++.++.||-+-|..+.|++ .-.++++||.|.+|+||+..+++++..+
T Consensus 70 GDDykIkVWnYk~r---------------rclftL~GHlDYVRt~~FHh---eyPWIlSASDDQTIrIWNwqsr~~iavl 131 (1202)
T KOG0292|consen 70 GDDYKIKVWNYKTR---------------RCLFTLLGHLDYVRTVFFHH---EYPWILSASDDQTIRIWNWQSRKCIAVL 131 (1202)
T ss_pred CCccEEEEEecccc---------------eehhhhccccceeEEeeccC---CCceEEEccCCCeEEEEeccCCceEEEE
Confidence 6 589999999864 57889999999999999999 8999999999999999999999999999
Q ss_pred ccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCc---ccCCCCCCCcccCCCCCCcceeeecc---ccccee
Q 003423 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHV---APLLNSPEGNHAHGSSSDFKCFKLQD---QQHTAV 247 (821)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 247 (821)
.+|.. .+.++.|+ |...++++++.|.+|+|||+..-+. .|.. -...+....... +.....
T Consensus 132 tGHnH-YVMcAqFh---ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~----------~e~~~~~~~~~~dLfg~~DaV 197 (1202)
T KOG0292|consen 132 TGHNH-YVMCAQFH---PTEDLIVSASLDQTVRVWDISGLRKKNKAPGS----------LEDQMRGQQGNSDLFGQTDAV 197 (1202)
T ss_pred ecCce-EEEeeccC---CccceEEEecccceEEEEeecchhccCCCCCC----------chhhhhccccchhhcCCcCee
Confidence 88764 56777885 5678999999999999999973221 1110 000000000000 011234
Q ss_pred eEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEEe
Q 003423 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAG 325 (821)
Q Consensus 248 ~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~~ 325 (821)
..+.+.||+..|+-++|+|.-.+++||++|+.|++|.+...+. -++ -+..||...|.++-|+| +.++|.|
T Consensus 198 VK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa------WEv--DtcrgH~nnVssvlfhp~q~lIlSns 269 (1202)
T KOG0292|consen 198 VKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA------WEV--DTCRGHYNNVSSVLFHPHQDLILSNS 269 (1202)
T ss_pred eeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc------eee--hhhhcccCCcceEEecCccceeEecC
Confidence 5567889999999999999999999999999999999987543 223 47899999999999996 8999999
Q ss_pred CCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 326 ~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
+|++|++||+ ..+.+++++...+ ..|.++.+|..++++.| .|+-+.+|.++
T Consensus 270 EDksirVwDm~kRt~v~tfrrend-RFW~laahP~lNLfAAg-HDsGm~VFkle 321 (1202)
T KOG0292|consen 270 EDKSIRVWDMTKRTSVQTFRREND-RFWILAAHPELNLFAAG-HDSGMIVFKLE 321 (1202)
T ss_pred CCccEEEEecccccceeeeeccCC-eEEEEEecCCcceeeee-cCCceEEEEEc
Confidence 9999999999 5677888887666 49999999998877665 56668888885
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-34 Score=258.76 Aligned_cols=296 Identities=17% Similarity=0.232 Sum_probs=228.2
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccC-----CceeEEEccCcceeEEEEeeccCCccCeEE
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-----SSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l 196 (821)
+....++++|+++|+.++..+. +.+.|++++.|.++.+|++.. |...+.+.+|.. .+..+.. ++|+++.
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~--~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH-~v~dv~~---s~dg~~a 78 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIK--NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH-FVSDVVL---SSDGNFA 78 (315)
T ss_pred heeeeeecCCCceEEEEEeecC--CCceEEEcccceEEEEEEeccCccccCceeeeeeccce-EecceEE---ccCCceE
Confidence 4566789999999999999982 467899999999999999864 455777887554 3333333 5899999
Q ss_pred EEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeC
Q 003423 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (821)
Q Consensus 197 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~ 276 (821)
++++.|+++++||+. .++..+.|.||...|.+++|++|.+.++||+.
T Consensus 79 lS~swD~~lrlWDl~---------------------------------~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr 125 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLA---------------------------------TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR 125 (315)
T ss_pred EeccccceEEEEEec---------------------------------CCcEEEEEEecCCceEEEEecCCCceeecCCC
Confidence 999999999999999 66788889999999999999999999999999
Q ss_pred CCeEEEEecccCcccCCCCceeeeceEEec--cceeEEEEEEcC----CEEEEEeCCCeEEEEcCC-CceeeEeecccCC
Q 003423 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYG--HNARVWDCCLTD----SFIITAGEDCTCRVWGSD-GKQLKMIKEHIGR 349 (821)
Q Consensus 277 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~v~~~~----~~l~s~~~dg~i~iwd~~-~~~~~~~~~h~~~ 349 (821)
|++|++|++..... .+... +...|.|++|+| .+|++++.|+++++||++ -+....+.+|++
T Consensus 126 DkTiklwnt~g~ck-----------~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~- 193 (315)
T KOG0279|consen 126 DKTIKLWNTLGVCK-----------YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG- 193 (315)
T ss_pred cceeeeeeecccEE-----------EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-
Confidence 99999999987644 33333 378899999995 489999999999999994 566677899998
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEEcCC-cCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEee
Q 003423 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428 (821)
Q Consensus 350 ~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~ 428 (821)
.++.++++|||.++++||.||.+.+||++. +.+.+++ +...|.+++|+
T Consensus 194 ~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-------------------------------a~~~v~sl~fs 242 (315)
T KOG0279|consen 194 YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-------------------------------AFDIVNSLCFS 242 (315)
T ss_pred cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-------------------------------CCCeEeeEEec
Confidence 699999999999999999999999999954 3333322 23458999999
Q ss_pred cCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCC
Q 003423 429 SEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP 508 (821)
Q Consensus 429 ~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~ 508 (821)
|+...|+...... |+||++.++....
T Consensus 243 pnrywL~~at~~s------------------------------------------------------IkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 243 PNRYWLCAATATS------------------------------------------------------IKIWDLESKAVVE 268 (315)
T ss_pred CCceeEeeccCCc------------------------------------------------------eEEEeccchhhhh
Confidence 8866555543222 4444444433322
Q ss_pred cceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeec
Q 003423 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLC 553 (821)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 553 (821)
...............+.++..+++++|..|++|..|+.|++|.+.
T Consensus 269 ~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 269 ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 222222111122233455556677889999999999999999875
No 18
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=7.6e-33 Score=281.11 Aligned_cols=522 Identities=14% Similarity=0.139 Sum_probs=342.4
Q ss_pred CCcceeeccce-------eeeeeEEEEEeccCCCCCCcceEEeec---CCeEEEEECCCCeeeeEEEeeccccEEeEEec
Q 003423 5 DLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (821)
Q Consensus 5 ~i~~w~~~~~~-------~~~~Vt~l~~~~~p~~~~~~~~l~~g~---~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~ 74 (821)
++.++|+..-. +-.++||+||+ ++ ++|+++|+ .+.++||++.....+..+..|+- .|.+++|+
T Consensus 59 vVVlfn~~~~tQ~hlvnssRk~~t~vAfS--~~----GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY-~vtcvaFs 131 (1080)
T KOG1408|consen 59 VVVLFNVDSCTQSHLVNSSRKPLTCVAFS--QN----GRYVATGECGRTPASKVWSLAFHGVVAEFVDHKY-NVTCVAFS 131 (1080)
T ss_pred EEEEEcccccchhheecccCcceeEEEEc--CC----CcEEEecccCCCccceeeeeccccchhhhhhccc-cceeeeec
Confidence 45566666543 34689999999 98 89999998 37899999999888888887665 69999999
Q ss_pred cccCCCCCCccceeeEEEEEc---CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEE
Q 003423 75 FINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (821)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~g---~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~ 151 (821)
|.. .+++..| |=.|.+|++.... ...-..-...|..++|+. +|.+++
T Consensus 132 p~~-----------kyvvSVGsQHDMIVnv~dWr~N~----------------~~asnkiss~Vsav~fsE---dgSYfv 181 (1080)
T KOG1408|consen 132 PGN-----------KYVVSVGSQHDMIVNVNDWRVNS----------------SGASNKISSVVSAVAFSE---DGSYFV 181 (1080)
T ss_pred CCC-----------cEEEeeccccceEEEhhhhhhcc----------------cccccccceeEEEEEEcc---CCceee
Confidence 763 3666555 3467888776432 011112346799999999 999999
Q ss_pred EEECCCcEEEEEccCCceeE-------------EE--------ccCcc-e--eEEEEee----ccC--------------
Q 003423 152 IGCSDNSIRVWDISNSSIIL-------------EV--------HSPER-C--LLYSMKL----WGD-------------- 189 (821)
Q Consensus 152 t~~~d~~i~iwd~~~~~~~~-------------~~--------~~~~~-~--~~~s~~~----~~~-------------- 189 (821)
|++ +..|++|.++.+.... .+ .+... + ..|++.- ..+
T Consensus 182 T~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRT 260 (1080)
T KOG1408|consen 182 TSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRT 260 (1080)
T ss_pred eee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhc
Confidence 987 6789999998665211 00 00000 0 0111100 000
Q ss_pred ------CccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE--ecCCCcEEE
Q 003423 190 ------NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL--VGHEGSIFR 261 (821)
Q Consensus 190 ------s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I~~ 261 (821)
.-...+|+.|..+|.|++++..+-+..... +..++.+.+.. ... +..++..- .+--..-.+
T Consensus 261 TnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tl---pr~halg~d~a-~~~-------q~~~~~s~~~~a~fPD~IA 329 (1080)
T KOG1408|consen 261 TNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTL---PRSHALGSDTA-NLS-------QPEPKNSESSPAIFPDAIA 329 (1080)
T ss_pred cccceeeeecceEEEeeccceeeecCcchhhhcccc---ccccccccchh-hcc-------cccccccccCcccCCceeE
Confidence 124568999999999999998743321111 00011110000 000 00011100 011122346
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-------------CCEEEEEeCCC
Q 003423 262 IEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-------------DSFIITAGEDC 328 (821)
Q Consensus 262 l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-------------~~~l~s~~~dg 328 (821)
+.|+|....|.+...|..+.|||+++-.. +... ..+.-|..-||++.-. +..++|+++|+
T Consensus 330 ~~Fdet~~klscVYndhSlYvWDvrD~~k-----vgk~--~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~ 402 (1080)
T KOG1408|consen 330 CQFDETTDKLSCVYNDHSLYVWDVRDVNK-----VGKC--SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDG 402 (1080)
T ss_pred EEecCCCceEEEEEcCceEEEEecccccc-----ccce--eeeeeccceeeeeccccccccCcccccCCccceeEecCCC
Confidence 78999999999999999999999998654 2222 4677799999998643 25899999999
Q ss_pred eEEEEcCCC----ceeeE----------------------------------eecccCCCeEEEEEecCCCEEEEEeCCC
Q 003423 329 TCRVWGSDG----KQLKM----------------------------------IKEHIGRGIWRCLYDSLSSLLVTAGFDS 370 (821)
Q Consensus 329 ~i~iwd~~~----~~~~~----------------------------------~~~h~~~~i~~l~~~~~~~~l~tg~~dg 370 (821)
+||+|++++ ...+. .-... -++++++++|+|++||+|..-|
T Consensus 403 TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r-~G~R~~~vSp~gqhLAsGDr~G 481 (1080)
T KOG1408|consen 403 TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSR-FGFRALAVSPDGQHLASGDRGG 481 (1080)
T ss_pred cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcc-cceEEEEECCCcceecccCccC
Confidence 999999853 21000 00011 2599999999999999999999
Q ss_pred cEEEEEcCC-cCCCcccCCcccc---ccC------------CCcceEEee-cCCcccceeccCCCCcceEEEEeecCC--
Q 003423 371 AIKVHQFQA-FLPGSLESHPEAK---EFN------------GRTEIFSIK-IPNFSEQIRLTDSKSEYVRCLHLTSED-- 431 (821)
Q Consensus 371 ~I~iwd~~~-~~~~~~~~~~~~~---~~~------------~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~f~~~~-- 431 (821)
++++|++.. ...-.++.|...+ .+. ...+.+.+- ....-...+.++.|+..|+++.|...|
T Consensus 482 nlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 482 NLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN 561 (1080)
T ss_pred ceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence 999999955 3344455554322 111 111111111 111123345677889999999999877
Q ss_pred eEEEEecCCcEEEEEecCC-Ccce-eeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCc
Q 003423 432 TLYIATNHGYLYHTKLCDM-DSVN-WNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQ 509 (821)
Q Consensus 432 ~~l~~~~~g~~~~~~i~~~-~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~ 509 (821)
..++++...+...++.... ..+. +..-.+......++.|++.++. +++++++.|.+|+||++..++..
T Consensus 562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~--------k~v~t~cQDrnirif~i~sgKq~-- 631 (1080)
T KOG1408|consen 562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS--------KLVVTVCQDRNIRIFDIESGKQV-- 631 (1080)
T ss_pred eEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCc--------ceEEEEecccceEEEecccccee--
Confidence 4455544333332233221 1111 1112222235567778876654 89999999999999999876542
Q ss_pred ceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEee
Q 003423 510 LSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDAS 589 (821)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 589 (821)
..+..+.+.+..+..++ ..|.|.|+++...|.++.++|...+ +|++.+ .+|...||.+.|+
T Consensus 632 --k~FKgs~~~eG~lIKv~--lDPSgiY~atScsdktl~~~Df~sg--------------EcvA~m-~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 632 --KSFKGSRDHEGDLIKVI--LDPSGIYLATSCSDKTLCFVDFVSG--------------ECVAQM-TGHSEAVTGVKFL 692 (1080)
T ss_pred --eeecccccCCCceEEEE--ECCCccEEEEeecCCceEEEEeccc--------------hhhhhh-cCcchheeeeeec
Confidence 23334444445555544 6688999999999999999999988 888886 8999999999999
Q ss_pred cCCCEEEEEcCCCcEEEEecCcc
Q 003423 590 FEDEVLFCGDLRGNLVLFPLLRD 612 (821)
Q Consensus 590 ~~~~~L~sgs~dG~i~iw~~~~~ 612 (821)
+|-+.|++.+.||.|.+|.+...
T Consensus 693 nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred ccchhheeecCCceEEEEECchh
Confidence 99999999999999999998753
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.5e-34 Score=253.92 Aligned_cols=281 Identities=21% Similarity=0.338 Sum_probs=235.1
Q ss_pred CCCCCCcceeeccceee-------eeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCe--eeeEEEeeccccEEeE
Q 003423 1 MGKKDLSEWRLDVGQYL-------GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT--LIRPFQVFHGIRLHGI 71 (821)
Q Consensus 1 ~~~~~i~~w~~~~~~~~-------~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~--~~~~~~~~~~~~i~~i 71 (821)
+.|.+||+|.+.+|... +-|++|+.. || +++||++....|++||++++. ++.++..+.. +|..+
T Consensus 17 ~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiT--pd----k~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k-NVtaV 89 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTIQHPDSQVNRLEIT--PD----KKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK-NVTAV 89 (311)
T ss_pred cCcceeeeeehhcCeEEEEEecCccceeeEEEc--CC----cchhhhccCCeeEEEEccCCCCCceeEEeccCC-ceEEE
Confidence 35899999999999833 458999999 99 889999999999999999875 5888887655 69999
Q ss_pred EeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEE
Q 003423 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (821)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~ 151 (821)
.|..++ ..+...+.||+++|||+.... ..+.-.|..+|+++..+| ++..|+
T Consensus 90 gF~~dg----------rWMyTgseDgt~kIWdlR~~~----------------~qR~~~~~spVn~vvlhp---nQteLi 140 (311)
T KOG0315|consen 90 GFQCDG----------RWMYTGSEDGTVKIWDLRSLS----------------CQRNYQHNSPVNTVVLHP---NQTELI 140 (311)
T ss_pred EEeecC----------eEEEecCCCceEEEEeccCcc----------------cchhccCCCCcceEEecC---CcceEE
Confidence 998553 245556668999999998532 233345779999999999 999999
Q ss_pred EEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCC
Q 003423 152 IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (821)
Q Consensus 152 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 231 (821)
+|..+|.|++||+.+..+..++.......+.++.. .+|+.+++++...|..++|++-+..
T Consensus 141 s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v---~~dgsml~a~nnkG~cyvW~l~~~~----------------- 200 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV---MPDGSMLAAANNKGNCYVWRLLNHQ----------------- 200 (311)
T ss_pred eecCCCcEEEEEccCCccccccCCCCCcceeeEEE---cCCCcEEEEecCCccEEEEEccCCC-----------------
Confidence 99999999999999988877776666666777776 4799999999999999999987211
Q ss_pred CCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeE
Q 003423 232 SDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (821)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i 311 (821)
......++..+++|++-|....+|||+++||+||.|.+++||+..+.-. .+ ..+.+|+..+
T Consensus 201 ----------~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k-----le----~~l~gh~rWv 261 (311)
T KOG0315|consen 201 ----------TASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK-----LE----LVLTGHQRWV 261 (311)
T ss_pred ----------ccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee-----eE----EEeecCCceE
Confidence 1124577888999999999999999999999999999999999988622 22 5889999999
Q ss_pred EEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEe
Q 003423 312 WDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYD 357 (821)
Q Consensus 312 ~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~ 357 (821)
|+++|+ +.+|+||+.|+++++|++ .++.++.+.+|.. +..+++..
T Consensus 262 Wdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K-~~vc~~ln 309 (311)
T KOG0315|consen 262 WDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK-AAVCVALN 309 (311)
T ss_pred EeeeeccCccEEEecCCCCceeecccccCceeeecCCccc-ccEEEEee
Confidence 999999 689999999999999999 7899999999987 46666653
No 20
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-32 Score=273.18 Aligned_cols=466 Identities=13% Similarity=0.196 Sum_probs=315.8
Q ss_pred ccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeec
Q 003423 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV 143 (821)
Q Consensus 64 ~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~ 143 (821)
...+|.++.++|.. ..++++--.|.|.||+.++. .+++.+.-..-+|++..|-+
T Consensus 12 rSdRVKsVd~HPte----------Pw~la~LynG~V~IWnyetq---------------tmVksfeV~~~PvRa~kfia- 65 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTE----------PWILAALYNGDVQIWNYETQ---------------TMVKSFEVSEVPVRAAKFIA- 65 (794)
T ss_pred cCCceeeeecCCCC----------ceEEEeeecCeeEEEecccc---------------eeeeeeeecccchhhheeee-
Confidence 44589999999773 35777778999999999865 46677777778999999999
Q ss_pred CCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCC
Q 003423 144 CNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (821)
Q Consensus 144 ~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 223 (821)
..+++++|+.|..||||+..+++.+..+..|.. .+.+++.+ |..-++++++.|-.|++||++
T Consensus 66 --RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D-yIR~iavH---Pt~P~vLtsSDDm~iKlW~we------------ 127 (794)
T KOG0276|consen 66 --RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD-YIRSIAVH---PTLPYVLTSSDDMTIKLWDWE------------ 127 (794)
T ss_pred --ccceEEEecCCceEEEEecccceeeEEeecccc-ceeeeeec---CCCCeEEecCCccEEEEeecc------------
Confidence 999999999999999999999999999998865 35566665 556699999999999999998
Q ss_pred CcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecccCcccCCCCceeeece
Q 003423 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (821)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 302 (821)
....+.+++.||+.-|.+++|+| |.+.+||++-|++|++|.+..... . .
T Consensus 128 --------------------~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~-----n-----f 177 (794)
T KOG0276|consen 128 --------------------NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP-----N-----F 177 (794)
T ss_pred --------------------CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC-----c-----e
Confidence 36678899999999999999999 567999999999999999988654 3 6
Q ss_pred EEeccceeEEEEEEc-C---CEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 303 VLYGHNARVWDCCLT-D---SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 303 ~~~~h~~~i~~v~~~-~---~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
++.+|...|+|+.|- + .+++||+.|.++++||. +..|++++.+|.. .|..+.|+|.-..+++|++||++++|+-
T Consensus 178 Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 178 TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred eeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc-cceEEEecCCCcEEEEecCCccEEEecC
Confidence 899999999999997 2 59999999999999999 7789999999999 6999999999999999999999999987
Q ss_pred CCcC-CCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCC-eEEEEecCCcEEEEEecCCCccee
Q 003423 378 QAFL-PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDSVNW 455 (821)
Q Consensus 378 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~-~~l~~~~~g~~~~~~i~~~~~~~~ 455 (821)
.+-. ..++ .-.-+.+.|++-.+.+ ++.++..+|.+. +++
T Consensus 257 ~Ty~lE~tL------------------------------n~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~l-------- 297 (794)
T KOG0276|consen 257 KTYKLEKTL------------------------------NYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKL-------- 297 (794)
T ss_pred cceehhhhh------------------------------hcCCceEEEEeecCCCCeEEEeccCCcEE-EEc--------
Confidence 5421 1111 1112457888877654 444444444432 222
Q ss_pred eEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCC----CCcceeEEeeccCccceeeeeEEee
Q 003423 456 NKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVH----TPQLSFTFTWSAGIERQLLGTYWCK 531 (821)
Q Consensus 456 ~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (821)
..+.|..+|+. .++++-. ..+.|.--++.+... .....+.+....-+...+..-....
T Consensus 298 ------greeP~vsMd~----------~gKIiwa--~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~h 359 (794)
T KOG0276|consen 298 ------GREEPAVSMDS----------NGKIIWA--VHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAH 359 (794)
T ss_pred ------cCCCCceeecC----------CccEEEE--cCceeeeeeceeccCcccccCCccccchhhhccccccchHHhcc
Confidence 22334444432 1122211 111222212111000 0000000000000011111112346
Q ss_pred cCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCc
Q 003423 532 SLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 532 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~ 611 (821)
+|+|++++++ .||.-.||..-.. ...+-+.-..+.|++|.+..++-..+|.|+++. +
T Consensus 360 sPNGrfV~Vc-gdGEyiIyTala~--------------------RnK~fG~~~eFvw~~dsne~avRes~~~vki~k--n 416 (794)
T KOG0276|consen 360 SPNGRFVVVC-GDGEYIIYTALAL--------------------RNKAFGSGLEFVWAADSNEFAVRESNGNVKIFK--N 416 (794)
T ss_pred CCCCcEEEEe-cCccEEEEEeeeh--------------------hhcccccceeEEEcCCCCeEEEEecCCceEEEe--c
Confidence 6889988766 4777777753221 122334457888999988888888889999993 1
Q ss_pred ccccccccccccccCcccccccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEeecCCceeeeeeeeeeeeeeeee
Q 003423 612 DLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQ 691 (821)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 691 (821)
++....++- . .. .-.+. +..|+..-.++.+|+|+-+... .++++...
T Consensus 417 -------------fke~ksi~~---~-~~-~e~i~-----gg~Llg~~ss~~~~fydW~~~~---------lVrrI~v~- 463 (794)
T KOG0276|consen 417 -------------FKEHKSIRP---D-MS-AEGIF-----GGPLLGVRSSDFLCFYDWESGE---------LVRRIEVT- 463 (794)
T ss_pred -------------ceecccccc---c-cc-eeeec-----CCceEEEEeCCeEEEEEcccce---------EEEEEeec-
Confidence 111122210 0 01 11122 3557777778899999987642 22222211
Q ss_pred eeccCCCccCCCCCeEEEeeecccEEEEEC
Q 003423 692 SVSAENNSIDLASCNYAAGFASTDFIIWNL 721 (821)
Q Consensus 692 ~~~~~~~~~~~~~~~l~~g~~~~~~~vW~~ 721 (821)
+....|.+++.|++-..+.+|.+.-.
T Consensus 464 ----~k~v~w~d~g~lVai~~d~Sfyil~~ 489 (794)
T KOG0276|consen 464 ----SKHVYWSDNGELVAIAGDDSFYILKF 489 (794)
T ss_pred ----cceeEEecCCCEEEEEecCceeEEEe
Confidence 12334545555565555667766653
No 21
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=2.3e-31 Score=260.62 Aligned_cols=505 Identities=14% Similarity=0.184 Sum_probs=355.5
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeecC---------CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccc
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGSG---------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~~---------~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 86 (821)
|...|.|++.+ || .-++++|.. +.++|||..+-..++.+-.++. .|.+++|++.. .+
T Consensus 103 H~ddikc~~vH--Pd----ri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~-GV~~vaFsk~~-----~G-- 168 (626)
T KOG2106|consen 103 HNDDIKCMAVH--PD----RIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDR-GVTCVAFSKIN-----GG-- 168 (626)
T ss_pred CCCceEEEeec--CC----ceeeccCcccccCCCcCCCeeeecccccceeeeeeccccc-cceeeeecccC-----CC--
Confidence 66779999999 98 556665552 4799999888887887776666 69999999652 21
Q ss_pred eeeEEEEEc---CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEE
Q 003423 87 VTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (821)
Q Consensus 87 ~~~~l~~~g---~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd 163 (821)
.++++.. +..+.+||+..+. .....+..++.|..++|+| .+.+++++++ .+.+.+|+
T Consensus 169 --~~l~~vD~s~~h~lSVWdWqk~~---------------~~~~vk~sne~v~~a~FHP--td~nliit~G-k~H~~Fw~ 228 (626)
T KOG2106|consen 169 --SLLCAVDDSNPHMLSVWDWQKKA---------------KLGPVKTSNEVVFLATFHP--TDPNLIITCG-KGHLYFWT 228 (626)
T ss_pred --ceEEEecCCCccccchhhchhhh---------------ccCcceeccceEEEEEecc--CCCcEEEEeC-CceEEEEE
Confidence 2444433 4678999998543 3344455668899999999 2445556555 78999999
Q ss_pred ccCCceeEE---EccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeec
Q 003423 164 ISNSSIILE---VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (821)
Q Consensus 164 ~~~~~~~~~---~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (821)
.+.+...++ +..+++..+.++.|. .+.-+++|..+|.|.||+..
T Consensus 229 ~~~~~l~k~~~~fek~ekk~Vl~v~F~----engdviTgDS~G~i~Iw~~~----------------------------- 275 (626)
T KOG2106|consen 229 LRGGSLVKRQGIFEKREKKFVLCVTFL----ENGDVITGDSGGNILIWSKG----------------------------- 275 (626)
T ss_pred ccCCceEEEeeccccccceEEEEEEEc----CCCCEEeecCCceEEEEeCC-----------------------------
Confidence 998876543 556777888999983 34458899999999999987
Q ss_pred ccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCE
Q 003423 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSF 320 (821)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~ 320 (821)
..+..+...+|.+.|++++...+|.+| ||+.|+.|..||-.-. . .++ ..+....++|..++-...-
T Consensus 276 ----~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~-k-----~r~---~elPe~~G~iRtv~e~~~d 341 (626)
T KOG2106|consen 276 ----TNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYR-K-----LRE---TELPEQFGPIRTVAEGKGD 341 (626)
T ss_pred ----CceEEeEeeecCCceEEEEEecCccEe-ecCccceEEecccccc-c-----ccc---ccCchhcCCeeEEecCCCc
Confidence 333333444899999999999998654 5999999999993222 2 122 2444556677777766333
Q ss_pred EEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcce
Q 003423 321 IITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (821)
Q Consensus 321 l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 400 (821)
|+.|...+.|..=.++........+|.. ..|.++.+|+.++++|++.|+.+++|+ +.+..
T Consensus 342 i~vGTtrN~iL~Gt~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~-~~k~~------------------ 401 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLE------------------ 401 (626)
T ss_pred EEEeeccceEEEeeecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc-CCcee------------------
Confidence 7777777777666666666667778887 699999999999999999999999999 32211
Q ss_pred EEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCC
Q 003423 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYP 480 (821)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s 480 (821)
++.. -.++..|+.|+|.|.+.+++..|..+.++... .....+. ..+.++.++.+.+
T Consensus 402 wt~~-------------~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~---~~lv~~~--~d~~~ls~v~ysp------ 457 (626)
T KOG2106|consen 402 WTKI-------------IEDPAECADFHPSGVVAVGTATGRWFVLDTET---QDLVTIH--TDNEQLSVVRYSP------ 457 (626)
T ss_pred EEEE-------------ecCceeEeeccCcceEEEeeccceEEEEeccc---ceeEEEE--ecCCceEEEEEcC------
Confidence 1111 13558999999999888889889887655443 2211222 2277888888865
Q ss_pred CCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCccc
Q 003423 481 CGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVC 560 (821)
Q Consensus 481 ~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 560 (821)
++.++|+|+.|+.|+||.++.............. .......+++|++++.+-+.|-.|..|......+..+
T Consensus 458 --~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g-------s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts 528 (626)
T KOG2106|consen 458 --DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG-------SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITS 528 (626)
T ss_pred --CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC-------ceeEEeeecCCCceEEeccCceEEEEEccccCcccce
Confidence 5699999999999999999875443222222211 1122345678899999999999999995443333222
Q ss_pred ccCCccceeeeeEEE---ecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccCC
Q 003423 561 YESSKTNNVFLVAEF---SSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGI 637 (821)
Q Consensus 561 ~~~~~~~~~~~~~~~---~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 637 (821)
.+..+-....+.-.| ...++..|..++-+.+.++||+|+..|.|++|..... .+ -.+...+ +.| .
T Consensus 529 ~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~--------s~--rA~~he~-~gh-s 596 (626)
T KOG2106|consen 529 VKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCS--------SP--RAPSHEY-GGH-S 596 (626)
T ss_pred ecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccC--------CC--cccceee-ccc-c
Confidence 222222233333333 3467778888899999999999999999999987632 11 1111122 366 4
Q ss_pred cceEEEEEEecCCCceEEEEecCCCeEEEEEe
Q 003423 638 STVSTLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (821)
Q Consensus 638 ~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~ 669 (821)
..|++++|. .+...|+++|.|..|..|++
T Consensus 597 ~~vt~V~Fl---~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 597 SHVTNVAFL---CKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ceeEEEEEe---eCCceEEecCCCceEEEEEe
Confidence 589999999 56678999999999999986
No 22
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.5e-33 Score=253.15 Aligned_cols=296 Identities=15% Similarity=0.255 Sum_probs=241.7
Q ss_pred ccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEe
Q 003423 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (821)
Q Consensus 121 ~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (821)
.++..+.|+||.+.|+++.|++ +.+.|++++.||.+.|||..+......++-+.. -+.+++| +|.++++|.|+
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~---Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~-WVMtCA~---sPSg~~VAcGG 116 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWST---DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS-WVMTCAY---SPSGNFVACGG 116 (343)
T ss_pred eeeeEEEecccccceeeeEecC---CcCeEEeeccCCeEEEEEcccccceeEEecCce-eEEEEEE---CCCCCeEEecC
Confidence 4556689999999999999999 999999999999999999998887777665543 4566666 78999999999
Q ss_pred eCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 003423 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (821)
Q Consensus 201 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i 280 (821)
.|+...||++.+.+. ....+....+.+|++-+.|..|.+| ..|+|+|.|.+.
T Consensus 117 LdN~Csiy~ls~~d~---------------------------~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TC 168 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDA---------------------------EGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTC 168 (343)
T ss_pred cCceeEEEecccccc---------------------------cccceeeeeecCccceeEEEEEcCC-CceEecCCCceE
Confidence 999999999982211 1133556678899999999999885 579999999999
Q ss_pred EEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC---CEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEE
Q 003423 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLY 356 (821)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~---~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~ 356 (821)
.+||+.+++. . ..+.||.+.|.++.+.| +.+++|+.|+..++||+ ++.++++|.+|.. .|.++.|
T Consensus 169 alWDie~g~~-----~-----~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-DINsv~f 237 (343)
T KOG0286|consen 169 ALWDIETGQQ-----T-----QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-DINSVRF 237 (343)
T ss_pred EEEEcccceE-----E-----EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc-ccceEEE
Confidence 9999999876 4 58899999999999984 89999999999999999 8999999999999 5999999
Q ss_pred ecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEE
Q 003423 357 DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA 436 (821)
Q Consensus 357 ~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~ 436 (821)
.|+|.-+++|+.|++.++||++... .+.+.
T Consensus 238 fP~G~afatGSDD~tcRlyDlRaD~--------------------------------------------------~~a~y 267 (343)
T KOG0286|consen 238 FPSGDAFATGSDDATCRLYDLRADQ--------------------------------------------------ELAVY 267 (343)
T ss_pred ccCCCeeeecCCCceeEEEeecCCc--------------------------------------------------EEeee
Confidence 9999999999999999999996410 00000
Q ss_pred ecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEee
Q 003423 437 TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTW 516 (821)
Q Consensus 437 ~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~ 516 (821)
..+ . ...++. ++
T Consensus 268 s~~------------~----------~~~git--------------------------------------------Sv-- 279 (343)
T KOG0286|consen 268 SHD------------S----------IICGIT--------------------------------------------SV-- 279 (343)
T ss_pred ccC------------c----------ccCCce--------------------------------------------eE--
Confidence 000 0 000111 11
Q ss_pred ccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEE
Q 003423 517 SAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLF 596 (821)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~ 596 (821)
.++..|++|++|..|..+.+||.-.+ +.+..+ .+|..+|+|+..+|||.-|+
T Consensus 280 -------------~FS~SGRlLfagy~d~~c~vWDtlk~--------------e~vg~L-~GHeNRvScl~~s~DG~av~ 331 (343)
T KOG0286|consen 280 -------------AFSKSGRLLFAGYDDFTCNVWDTLKG--------------ERVGVL-AGHENRVSCLGVSPDGMAVA 331 (343)
T ss_pred -------------EEcccccEEEeeecCCceeEeecccc--------------ceEEEe-eccCCeeEEEEECCCCcEEE
Confidence 23334689999999999999998776 444444 79999999999999999999
Q ss_pred EEcCCCcEEEEe
Q 003423 597 CGDLRGNLVLFP 608 (821)
Q Consensus 597 sgs~dG~i~iw~ 608 (821)
+||.|.+++||.
T Consensus 332 TgSWDs~lriW~ 343 (343)
T KOG0286|consen 332 TGSWDSTLRIWA 343 (343)
T ss_pred ecchhHheeecC
Confidence 999999999994
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.4e-33 Score=272.60 Aligned_cols=317 Identities=16% Similarity=0.239 Sum_probs=255.7
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCC--C--eeeeEE---------EeeccccEEeEEeccccCCCC
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA--G--TLIRPF---------QVFHGIRLHGISCNFINCTEG 81 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t--~--~~~~~~---------~~~~~~~i~~i~~~~~~~~~~ 81 (821)
|..+|.+.+|+ |- ...+|++|+ +...++|++.. + .....+ .++....|++++|+.++
T Consensus 177 ~~~~V~~~~Wn--P~---~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G---- 247 (524)
T KOG0273|consen 177 HESEVFICAWN--PL---RDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG---- 247 (524)
T ss_pred CCCceEEEecC--ch---hhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC----
Confidence 78899999999 86 334888887 68999999864 1 111111 13445679999999554
Q ss_pred CCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEE
Q 003423 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (821)
Q Consensus 82 ~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~i 161 (821)
..+++...+|.+++|+.. +.++.++..|+++|.++.|+. .|++|++++.|+++.+
T Consensus 248 ------~~LatG~~~G~~riw~~~----------------G~l~~tl~~HkgPI~slKWnk---~G~yilS~~vD~ttil 302 (524)
T KOG0273|consen 248 ------TLLATGSEDGEARIWNKD----------------GNLISTLGQHKGPIFSLKWNK---KGTYILSGGVDGTTIL 302 (524)
T ss_pred ------CeEEEeecCcEEEEEecC----------------chhhhhhhccCCceEEEEEcC---CCCEEEeccCCccEEE
Confidence 245556679999999987 356788899999999999999 9999999999999999
Q ss_pred EEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecc
Q 003423 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (821)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (821)
||..++...+.+..+.... ..+.+ .+..-+++.+.|+.|+|+.+.
T Consensus 303 wd~~~g~~~q~f~~~s~~~-lDVdW----~~~~~F~ts~td~~i~V~kv~------------------------------ 347 (524)
T KOG0273|consen 303 WDAHTGTVKQQFEFHSAPA-LDVDW----QSNDEFATSSTDGCIHVCKVG------------------------------ 347 (524)
T ss_pred EeccCceEEEeeeeccCCc-cceEE----ecCceEeecCCCceEEEEEec------------------------------
Confidence 9999999888877665541 11222 255679999999999999998
Q ss_pred cccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC---
Q 003423 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--- 318 (821)
Q Consensus 242 ~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--- 318 (821)
...++.++.||.+.|.+|.|+|.|.+|+|||+|++++||+...... . ..+.+|...|+.+.|+|
T Consensus 348 ---~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~-----~-----~~l~~Hskei~t~~wsp~g~ 414 (524)
T KOG0273|consen 348 ---EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS-----V-----HDLQAHSKEIYTIKWSPTGP 414 (524)
T ss_pred ---CCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc-----h-----hhhhhhccceeeEeecCCCC
Confidence 6678889999999999999999999999999999999999877654 3 57889999999999983
Q ss_pred --------CEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCc-CCCcccCC
Q 003423 319 --------SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESH 388 (821)
Q Consensus 319 --------~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~-~~~~~~~~ 388 (821)
..+++++.|+++++||+ .|.++.++..|+. +|.+++|+|+|+++|+|+.||.|.+|+.+.. ..+.+.+
T Consensus 415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~- 492 (524)
T KOG0273|consen 415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG- 492 (524)
T ss_pred ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-
Confidence 48999999999999999 8999999999998 7999999999999999999999999998542 2222222
Q ss_pred ccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEE-EecCCcEEEEE
Q 003423 389 PEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTK 446 (821)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~-~~~~g~~~~~~ 446 (821)
.+.|..++|+.+|..+. ..++|.+..+.
T Consensus 493 ------------------------------~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 493 ------------------------------TGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred ------------------------------CCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 24588899998775544 44555555433
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.9e-33 Score=269.84 Aligned_cols=333 Identities=18% Similarity=0.272 Sum_probs=260.4
Q ss_pred ccCCCCcEEEEEEeecCCCCC-EEEEEECCCcEEEEEccCC--cee--EEEc---------cCcceeEEEEeeccCCccC
Q 003423 128 LPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNS--SII--LEVH---------SPERCLLYSMKLWGDNLEA 193 (821)
Q Consensus 128 ~~~h~~~I~~~~~~~~~~~~~-~l~t~~~d~~i~iwd~~~~--~~~--~~~~---------~~~~~~~~s~~~~~~s~~~ 193 (821)
+..|..+|.+.+|+| -.. .|++|+.|.+.++|++... ... ..++ .+.+.-+.++++ +.+|
T Consensus 174 vl~~~~~V~~~~WnP---~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W---n~~G 247 (524)
T KOG0273|consen 174 VLRHESEVFICAWNP---LRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW---NNDG 247 (524)
T ss_pred eccCCCceEEEecCc---hhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe---cCCC
Confidence 334999999999999 444 8999999999999999741 111 1111 122234556655 5689
Q ss_pred eEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEE
Q 003423 194 LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (821)
Q Consensus 194 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s 273 (821)
.+||+|..||.+++|+.. +..+.++..|+++|++|.|+.+|.+|++
T Consensus 248 ~~LatG~~~G~~riw~~~----------------------------------G~l~~tl~~HkgPI~slKWnk~G~yilS 293 (524)
T KOG0273|consen 248 TLLATGSEDGEARIWNKD----------------------------------GNLISTLGQHKGPIFSLKWNKKGTYILS 293 (524)
T ss_pred CeEEEeecCcEEEEEecC----------------------------------chhhhhhhccCCceEEEEEcCCCCEEEe
Confidence 999999999999999976 3456677889999999999999999999
Q ss_pred EeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCe
Q 003423 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGI 351 (821)
Q Consensus 274 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i 351 (821)
++.|+++.+||..++.. . ..+.-|..+-.++.|. ...+++++.|+.|+++.+ ...++.++.+|.+ .|
T Consensus 294 ~~vD~ttilwd~~~g~~-----~-----q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g-~V 362 (524)
T KOG0273|consen 294 GGVDGTTILWDAHTGTV-----K-----QQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG-EV 362 (524)
T ss_pred ccCCccEEEEeccCceE-----E-----EeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccC-ce
Confidence 99999999999988765 2 4667788877788887 689999999999999999 5678999999999 69
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEcCC-cCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecC
Q 003423 352 WRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE 430 (821)
Q Consensus 352 ~~l~~~~~~~~l~tg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~ 430 (821)
.++.|+|.+.+|++++.|+++++|++.. .+...+ ..|+..|..+.++|.
T Consensus 363 ~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l------------------------------~~Hskei~t~~wsp~ 412 (524)
T KOG0273|consen 363 NALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDL------------------------------QAHSKEIYTIKWSPT 412 (524)
T ss_pred EEEEECCCCceEEEecCCCeeEeeecCCCcchhhh------------------------------hhhccceeeEeecCC
Confidence 9999999999999999999999999843 211111 222333444444433
Q ss_pred CeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcc
Q 003423 431 DTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQL 510 (821)
Q Consensus 431 ~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~ 510 (821)
|..
T Consensus 413 g~v----------------------------------------------------------------------------- 415 (524)
T KOG0273|consen 413 GPV----------------------------------------------------------------------------- 415 (524)
T ss_pred CCc-----------------------------------------------------------------------------
Confidence 210
Q ss_pred eeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeec
Q 003423 511 SFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASF 590 (821)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 590 (821)
.+++ ..+..+++++.|++|++||+..+ .++..| ..|+.+|.+++|||
T Consensus 416 ----~~n~--------------~~~~~l~sas~dstV~lwdv~~g--------------v~i~~f-~kH~~pVysvafS~ 462 (524)
T KOG0273|consen 416 ----TSNP--------------NMNLMLASASFDSTVKLWDVESG--------------VPIHTL-MKHQEPVYSVAFSP 462 (524)
T ss_pred ----cCCC--------------cCCceEEEeecCCeEEEEEccCC--------------ceeEee-ccCCCceEEEEecC
Confidence 0011 12356788899999999999988 667777 78999999999999
Q ss_pred CCCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEee
Q 003423 591 EDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYD 670 (821)
Q Consensus 591 ~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~ 670 (821)
++++||+|+.||.|.+|++.. ......+ .+...|..|+|. .++.+|..+-.||.+|+-+++
T Consensus 463 ~g~ylAsGs~dg~V~iws~~~-------------~~l~~s~---~~~~~Ifel~Wn---~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 463 NGRYLASGSLDGCVHIWSTKT-------------GKLVKSY---QGTGGIFELCWN---AAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCcEEEecCCCCeeEeccccc-------------hheeEee---cCCCeEEEEEEc---CCCCEEEEEecCCCceEEEec
Confidence 999999999999999999873 2233333 356679999999 566889999999999998874
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-32 Score=249.44 Aligned_cols=283 Identities=16% Similarity=0.239 Sum_probs=234.1
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCC-----CeeeeEEEeeccccEEeEEeccccCCCCCCccceee
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-----GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t-----~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ 89 (821)
|.+.|++++.. +. ....+++++ |..+.+|++.. |.+++++..|+. .|..+..++++ .+
T Consensus 14 h~d~Vt~la~~--~~---~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH-~v~dv~~s~dg----------~~ 77 (315)
T KOG0279|consen 14 HTDWVTALAIK--IK---NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH-FVSDVVLSSDG----------NF 77 (315)
T ss_pred CCceEEEEEee--cC---CCceEEEcccceEEEEEEeccCccccCceeeeeeccce-EecceEEccCC----------ce
Confidence 78899999998 66 345666655 99999999864 778899998555 68899988653 36
Q ss_pred EEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce
Q 003423 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (821)
Q Consensus 90 ~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~ 169 (821)
.+.++-|+.+++||+..+ +..+.+.||...|++++|+| +...+++|+.|++|++|++....
T Consensus 78 alS~swD~~lrlWDl~~g---------------~~t~~f~GH~~dVlsva~s~---dn~qivSGSrDkTiklwnt~g~c- 138 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATG---------------ESTRRFVGHTKDVLSVAFST---DNRQIVSGSRDKTIKLWNTLGVC- 138 (315)
T ss_pred EEeccccceEEEEEecCC---------------cEEEEEEecCCceEEEEecC---CCceeecCCCcceeeeeeecccE-
Confidence 777778999999999864 46788999999999999999 99999999999999999986554
Q ss_pred eEEEccCc-ceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceee
Q 003423 170 ILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (821)
Q Consensus 170 ~~~~~~~~-~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (821)
..++.... +..+.+++|.+. .+..+|++++.|+.+++||++ ..+.
T Consensus 139 k~t~~~~~~~~WVscvrfsP~-~~~p~Ivs~s~DktvKvWnl~---------------------------------~~~l 184 (315)
T KOG0279|consen 139 KYTIHEDSHREWVSCVRFSPN-ESNPIIVSASWDKTVKVWNLR---------------------------------NCQL 184 (315)
T ss_pred EEEEecCCCcCcEEEEEEcCC-CCCcEEEEccCCceEEEEccC---------------------------------Ccch
Confidence 44444333 777888888654 357899999999999999999 6777
Q ss_pred EEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC-CEEEEEeCC
Q 003423 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGED 327 (821)
Q Consensus 249 ~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~l~s~~~d 327 (821)
...+.||.+.++.+++||||.+.++|+.||.+.+||++.++. ....+|...|.+++|+| .+.+.+..+
T Consensus 185 ~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-----------lysl~a~~~v~sl~fspnrywL~~at~ 253 (315)
T KOG0279|consen 185 RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-----------LYSLEAFDIVNSLCFSPNRYWLCAATA 253 (315)
T ss_pred hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-----------eEeccCCCeEeeEEecCCceeEeeccC
Confidence 888899999999999999999999999999999999999876 46778899999999996 566777788
Q ss_pred CeEEEEcC-CCceeeEeeccc--------CCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 328 CTCRVWGS-DGKQLKMIKEHI--------GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 328 g~i~iwd~-~~~~~~~~~~h~--------~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
..|+|||+ .+.++..++... .....+++|+++|..|+.|-.|+.|++|.+.
T Consensus 254 ~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 254 TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 88999999 455554443211 1135678999999999999999999999874
No 26
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.2e-31 Score=270.76 Aligned_cols=561 Identities=16% Similarity=0.212 Sum_probs=357.1
Q ss_pred cceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCC
Q 003423 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (821)
Q Consensus 35 ~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~ 114 (821)
+.+++.|.+..|.+||...-..+..+..|.. +|.++.+.|.. + ....++....|+.|.+|.+..+.
T Consensus 25 ~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a-~VnC~~~l~~s-----~--~~a~~vsG~sD~~v~lW~l~~~~------ 90 (764)
T KOG1063|consen 25 GGLVAFGAGPAIAVADPEKILIVTTLDGHVA-RVNCVHWLPTS-----E--IVAEMVSGDSDGRVILWKLRDEY------ 90 (764)
T ss_pred cceEEecCCceEEEeCcccceeEEeccCCcc-ceEEEEEcccc-----c--ccceEEEccCCCcEEEEEEeehh------
Confidence 3688889999999999988877778887666 89999998652 1 11245556668999999999442
Q ss_pred CCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEE-ECCCcEEEEEccCCc--eeEEEccCcc-eeEEEEeeccCC
Q 003423 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSS--IILEVHSPER-CLLYSMKLWGDN 190 (821)
Q Consensus 115 ~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~-~~d~~i~iwd~~~~~--~~~~~~~~~~-~~~~s~~~~~~s 190 (821)
+..+.++++|...+.|+.= ...+.++ ..|+++.+||.+..+ ++..+....+ .+..++++.+ .
T Consensus 91 -------~~~i~~~~g~~~~~~cv~a------~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~-~ 156 (764)
T KOG1063|consen 91 -------LIKIYTIQGHCKECVCVVA------RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK-N 156 (764)
T ss_pred -------eEEEEeecCcceeEEEEEe------eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhc-c
Confidence 5677888887766655542 2233333 679999999996555 2222222221 1222333333 3
Q ss_pred ccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCC-
Q 003423 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS- 269 (821)
Q Consensus 191 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~- 269 (821)
++.-++|.|+.+..|.++.-.. .+......+.||.+.|.+|+|...+.
T Consensus 157 ~~~~lla~Ggs~~~v~~~s~~~-------------------------------d~f~~v~el~GH~DWIrsl~f~~~~~~ 205 (764)
T KOG1063|consen 157 NKTFLLACGGSKFVVDLYSSSA-------------------------------DSFARVAELEGHTDWIRSLAFARLGGD 205 (764)
T ss_pred CCcEEEEecCcceEEEEeccCC-------------------------------cceeEEEEeeccchhhhhhhhhccCCC
Confidence 5566778888888888876541 15677889999999999999987554
Q ss_pred --EEEEEeCCCeEEEEecccCcccC----CC--------C----ceeee-----ceEEeccceeEEEEEEcC--CEEEEE
Q 003423 270 --KLVSVSDDRSARIWEVRAEYWKD----SD--------S----IEEVG-----SSVLYGHNARVWDCCLTD--SFIITA 324 (821)
Q Consensus 270 --~l~s~s~Dg~i~iwd~~~~~~~~----~~--------~----~~~~~-----~~~~~~h~~~i~~v~~~~--~~l~s~ 324 (821)
+|||+|.|+.||||.+.-..... .. + ...+. ...+.||...|+++.|++ ..|+++
T Consensus 206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSA 285 (764)
T KOG1063|consen 206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSA 285 (764)
T ss_pred cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheec
Confidence 78999999999999986544110 00 0 00110 134569999999999995 479999
Q ss_pred eCCCeEEEEcCCCc---e-----eeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCC
Q 003423 325 GEDCTCRVWGSDGK---Q-----LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNG 396 (821)
Q Consensus 325 ~~dg~i~iwd~~~~---~-----~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 396 (821)
+.|.++.+|..+.+ - +..+.+..+ +.+...|+|+++.+++-+.-|..++|.....
T Consensus 286 SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~-GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~---------------- 348 (764)
T KOG1063|consen 286 SADKSMIIWKPDENTGIWVDVVRLGEVGGSAG-GFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK---------------- 348 (764)
T ss_pred ccCcceEEEecCCccceEEEEEEeeccccccc-ceeeEEEcCCCCEEEEecccCcEEEEeccCc----------------
Confidence 99999999998322 2 222223333 6899999999999999999999999983211
Q ss_pred CcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCC--CcceeeEeeecc-CCcceEEEecc
Q 003423 397 RTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDM--DSVNWNKILQVS-EGMPIICMDLL 473 (821)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~--~~~~~~~~~~~~-~~~~i~~~~~~ 473 (821)
..+. ......+|-+.|+.+++.|.|.+|++.+... .-+++.. +...|..+.+.. +.....|+.+.
T Consensus 349 --~~w~--------~~~~iSGH~~~V~dv~W~psGeflLsvs~DQ--TTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 349 --TFWT--------QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQ--TTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred --ccee--------eccccccccccceeeeecCCCCEEEEecccc--ceeeecccccccceeeecccccccccceeeehc
Confidence 1111 0112345667899999999999888875433 3334332 333477777654 45567777765
Q ss_pred CCCCCCCCCCCcEEEEecCCccEEEEEecCCCC----------------------------CCccee-------------
Q 003423 474 SNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVH----------------------------TPQLSF------------- 512 (821)
Q Consensus 474 ~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~----------------------------~~~~~~------------- 512 (821)
.. ...+++|..+.-+|+|+....-. ..+...
T Consensus 417 n~--------~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~ 488 (764)
T KOG1063|consen 417 NE--------DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVC 488 (764)
T ss_pred cC--------CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccccee
Confidence 52 24556666666677766321000 000000
Q ss_pred ---E------EeeccCcccee-----------------eeeEEeecCCCeEEEEECCCC-----cEEEeeecCCCCcccc
Q 003423 513 ---T------FTWSAGIERQL-----------------LGTYWCKSLGHRFIFTADPKG-----RLKLWQLCDPFSSVCY 561 (821)
Q Consensus 513 ---~------~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~ 561 (821)
. ....|..+.++ -....+.+|+++++|+++... .|++|+.....
T Consensus 489 ~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~----- 563 (764)
T KOG1063|consen 489 AETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWL----- 563 (764)
T ss_pred eecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchh-----
Confidence 0 00001111000 011235668899999887655 58999887763
Q ss_pred cCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccCCcceE
Q 003423 562 ESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVS 641 (821)
Q Consensus 562 ~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt 641 (821)
....+ ..|+-.||.++||||+++|++.++|.++.+|...++.. .... +... ..|.+ -|=
T Consensus 564 ---------~~~~L-~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~------~e~~---fa~~-k~HtR-IIW 622 (764)
T KOG1063|consen 564 ---------QVQEL-EGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK------DEFR---FACL-KAHTR-IIW 622 (764)
T ss_pred ---------hhhee-cccceEEEEEEECCCCcEEEEeecCceEEeeeeecccc------hhhh---hccc-cccce-EEE
Confidence 22233 78999999999999999999999999999998764321 0001 1112 25632 344
Q ss_pred EEEEEecCCCceEEEEecCCCeEEEEEeecCCceeeeeeeeeeeeeeeeeeeccCCCccCCC-CCeEEEeeecccEEEEE
Q 003423 642 TLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLA-SCNYAAGFASTDFIIWN 720 (821)
Q Consensus 642 ~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~~~~~~vW~ 720 (821)
...|. +++.+|+|++||.++++|.......+.... ...++-..++....+.. ...+. ...+++|++.+.+++|+
T Consensus 623 dcsW~---pde~~FaTaSRDK~VkVW~~~~~~d~~i~~-~a~~~~~~aVTAv~~~~-~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 623 DCSWS---PDEKYFATASRDKKVKVWEEPDLRDKYISR-FACLKFSLAVTAVAYLP-VDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred EcccC---cccceeEEecCCceEEEEeccCchhhhhhh-hchhccCCceeeEEeec-cccccccceEEEEecccEEEEEe
Confidence 45566 566789999999999999996542211000 01111111222222111 11122 33589999999999999
Q ss_pred Cc
Q 003423 721 LI 722 (821)
Q Consensus 721 ~~ 722 (821)
..
T Consensus 698 ~~ 699 (764)
T KOG1063|consen 698 RK 699 (764)
T ss_pred cc
Confidence 55
No 27
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.9e-31 Score=240.30 Aligned_cols=295 Identities=20% Similarity=0.316 Sum_probs=233.7
Q ss_pred cceeeeccCCCCcEEEEEEeecCCC-CCEEEEEECCCcEEEEEccCC---ceeEEEccCcceeEEEEeeccCCccCeEEE
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNS---SIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~-~~~l~t~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (821)
+..++.+++|.+.+..++|+| . |..||+|+.|+.||+|+...+ .+...+...++..+.++++ +|.+++||
T Consensus 4 l~~~~~~~gh~~r~W~~awhp---~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw---sp~g~~La 77 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHP---GKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW---SPHGRYLA 77 (312)
T ss_pred ceeEEeecCCCCcEEEEEecc---CCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeee---cCCCcEEE
Confidence 456788999999999999999 6 889999999999999998853 2333444445555667766 68999999
Q ss_pred EEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCC
Q 003423 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (821)
Q Consensus 198 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~D 277 (821)
+|+.|.++.||.-.. ...+++.++.||+..|.|++|+++|++||||+.|
T Consensus 78 ~aSFD~t~~Iw~k~~-------------------------------~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD 126 (312)
T KOG0645|consen 78 SASFDATVVIWKKED-------------------------------GEFECVATLEGHENEVKCVAWSASGNYLATCSRD 126 (312)
T ss_pred EeeccceEEEeecCC-------------------------------CceeEEeeeeccccceeEEEEcCCCCEEEEeeCC
Confidence 999999999998651 1568899999999999999999999999999999
Q ss_pred CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEEeCCCeEEEEcC----CCceeeEeecccCCCe
Q 003423 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS----DGKQLKMIKEHIGRGI 351 (821)
Q Consensus 278 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~~~dg~i~iwd~----~~~~~~~~~~h~~~~i 351 (821)
+.|-||.+..... .++. ..+..|...|..+.|+| .+|+|++.|.+|++|+- +-.+.+++.+|.. .|
T Consensus 127 KSVWiWe~deddE-----fec~--aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TV 198 (312)
T KOG0645|consen 127 KSVWIWEIDEDDE-----FECI--AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TV 198 (312)
T ss_pred CeEEEEEecCCCc-----EEEE--eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eE
Confidence 9999999997655 6666 79999999999999997 89999999999999986 3468999999998 69
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCC
Q 003423 352 WRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (821)
Q Consensus 352 ~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~ 431 (821)
|+++|++.|..|++++.|+++++|...... ...|+..+..+++. ++
T Consensus 199 W~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---------------------------------~~~~sr~~Y~v~W~-~~ 244 (312)
T KOG0645|consen 199 WSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---------------------------------SGMHSRALYDVPWD-NG 244 (312)
T ss_pred EEEEecCCCceEEEecCCcceEeeeeccCc---------------------------------chhcccceEeeeec-cc
Confidence 999999999999999999999999863210 01223457777787 66
Q ss_pred eEEEEecCCcEEEEEecCC-CcceeeEeee--ccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEec
Q 003423 432 TLYIATNHGYLYHTKLCDM-DSVNWNKILQ--VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (821)
Q Consensus 432 ~~l~~~~~g~~~~~~i~~~-~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~ 502 (821)
.+..++.++.+..++..+. ....|..+.. ..++..+.++...+. ..+++++|+.||.+++|.+.
T Consensus 245 ~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~-------~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 245 VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK-------VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC-------CCCceeecCCCceEEEEEec
Confidence 6656666666665544432 2223333332 234556777777652 35899999999999999864
No 28
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.8e-31 Score=251.57 Aligned_cols=335 Identities=17% Similarity=0.245 Sum_probs=264.9
Q ss_pred eeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCC
Q 003423 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (821)
Q Consensus 124 ~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (821)
.+..+.+|++.|.+++.+| +.+++|||+.|..-.+|++.++....++.+|..+ +.++.| +.++.+||+|+.+|
T Consensus 56 S~~tF~~H~~svFavsl~P---~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDS-Vt~~~F---shdgtlLATGdmsG 128 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHP---NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDS-VTCCSF---SHDGTLLATGDMSG 128 (399)
T ss_pred ceeehhhcCCceEEEEeCC---CCceEEecCCCceEEEEEccCCcceeEecCCCCc-eEEEEE---ccCceEEEecCCCc
Confidence 4678999999999999999 9999999999999999999999998888888765 445555 67999999999999
Q ss_pred EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 003423 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (821)
Q Consensus 204 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iw 283 (821)
.|+||+.. ++.....+...-+.|-=+.|+|.+..|+.|+.||.+.+|
T Consensus 129 ~v~v~~~s---------------------------------tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw 175 (399)
T KOG0296|consen 129 KVLVFKVS---------------------------------TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMW 175 (399)
T ss_pred cEEEEEcc---------------------------------cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEE
Confidence 99999998 555666666666778889999999999999999999999
Q ss_pred ecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCC
Q 003423 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (821)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~ 360 (821)
.+..+.. . +.+.||+.++++=.|. +++++++..||+|++|++ +++++..+....+....++.++..+
T Consensus 176 ~ip~~~~-----~-----kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~ 245 (399)
T KOG0296|consen 176 QIPSQAL-----C-----KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAG 245 (399)
T ss_pred ECCCcce-----e-----eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccc
Confidence 9998543 2 6899999999999998 689999999999999999 8999888886555567889999999
Q ss_pred CEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCC
Q 003423 361 SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (821)
Q Consensus 361 ~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g 440 (821)
..+++|..++.+.+-+... |+.+... ++
T Consensus 246 ~~~~~g~~e~~~~~~~~~s---------------------------------------------------gKVv~~~-n~ 273 (399)
T KOG0296|consen 246 STLTKGNSEGVACGVNNGS---------------------------------------------------GKVVNCN-NG 273 (399)
T ss_pred ceeEeccCCccEEEEcccc---------------------------------------------------ceEEEec-CC
Confidence 9999999999877765421 1111111 11
Q ss_pred cEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCC-----CCcceeEEe
Q 003423 441 YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVH-----TPQLSFTFT 515 (821)
Q Consensus 441 ~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~-----~~~~~~~~~ 515 (821)
.. ......++..+.|+.+.+.. ..-.+.|+|+.||+|.|||+..... ++..+..+.
T Consensus 274 ~~--------------~~l~~~~e~~~esve~~~~s-----s~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~ 334 (399)
T KOG0296|consen 274 TV--------------PELKPSQEELDESVESIPSS-----SKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLK 334 (399)
T ss_pred CC--------------ccccccchhhhhhhhhcccc-----cccchhhcccccceEEEEecccchhheeccCCCceEEEE
Confidence 00 00001112222233322221 2347899999999999999876543 222233333
Q ss_pred eccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEE
Q 003423 516 WSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVL 595 (821)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L 595 (821)
|.+ ..+|++++.+|.|+.||.+.+ ++...+ .+|...|.+++++|+.+++
T Consensus 335 w~~----------------t~~l~t~c~~g~v~~wDaRtG--------------~l~~~y-~GH~~~Il~f~ls~~~~~v 383 (399)
T KOG0296|consen 335 WLN----------------TDYLLTACANGKVRQWDARTG--------------QLKFTY-TGHQMGILDFALSPQKRLV 383 (399)
T ss_pred EcC----------------cchheeeccCceEEeeecccc--------------ceEEEE-ecCchheeEEEEcCCCcEE
Confidence 332 378999999999999999998 788887 8999999999999999999
Q ss_pred EEEcCCCcEEEEecC
Q 003423 596 FCGDLRGNLVLFPLL 610 (821)
Q Consensus 596 ~sgs~dG~i~iw~~~ 610 (821)
+++|.|++.++|++.
T Consensus 384 vT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 384 VTVSDDNTALVFEVP 398 (399)
T ss_pred EEecCCCeEEEEecC
Confidence 999999999999865
No 29
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.3e-32 Score=255.22 Aligned_cols=298 Identities=17% Similarity=0.292 Sum_probs=243.8
Q ss_pred cccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEE
Q 003423 118 TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (821)
Q Consensus 118 ~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (821)
....+++.+.+.+|.+||.|+++.| ...+++||+.|++++|||+.++++..++.++... +-.+++ ++..-+++
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP---~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~-vr~vav---S~rHpYlF 209 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDP---GNEWFATGSADRTIKIWDLATGQLKLTLTGHIET-VRGVAV---SKRHPYLF 209 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCC---CceeEEecCCCceeEEEEcccCeEEEeecchhhe-eeeeee---cccCceEE
Confidence 3345778889999999999999999 8999999999999999999999999999877642 334444 56778999
Q ss_pred EEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCC
Q 003423 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (821)
Q Consensus 198 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~D 277 (821)
+++.|++|+.||++ ..+.+..+.||-..|.|++..|.-..|+||+.|
T Consensus 210 s~gedk~VKCwDLe---------------------------------~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grD 256 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLE---------------------------------YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRD 256 (460)
T ss_pred EecCCCeeEEEech---------------------------------hhhhHHHhccccceeEEEeccccceeEEecCCc
Confidence 99999999999999 667788889999999999999999999999999
Q ss_pred CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEE
Q 003423 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRC 354 (821)
Q Consensus 278 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l 354 (821)
.++|+||+++... + ..+.||..+|.++.+. +..++||+.|++|++||+ .|+.+.++..|.. .+.++
T Consensus 257 st~RvWDiRtr~~-----V-----~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-svral 325 (460)
T KOG0285|consen 257 STIRVWDIRTRAS-----V-----HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-SVRAL 325 (460)
T ss_pred ceEEEeeecccce-----E-----EEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc-eeeEE
Confidence 9999999999765 4 6899999999999998 789999999999999999 8999999998887 79999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcCC-cCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeE
Q 003423 355 LYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTL 433 (821)
Q Consensus 355 ~~~~~~~~l~tg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~ 433 (821)
+.+|....+|+++.|. |+.|++.. ..++.+ .+|..-|.+++...|+.+
T Consensus 326 ~lhP~e~~fASas~dn-ik~w~~p~g~f~~nl------------------------------sgh~~iintl~~nsD~v~ 374 (460)
T KOG0285|consen 326 CLHPKENLFASASPDN-IKQWKLPEGEFLQNL------------------------------SGHNAIINTLSVNSDGVL 374 (460)
T ss_pred ecCCchhhhhccCCcc-ceeccCCccchhhcc------------------------------ccccceeeeeeeccCceE
Confidence 9999999999999884 89999832 222222 334566899999999999
Q ss_pred EEEecCCcEEEEEecCCCcceee-Eeee---ccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCC
Q 003423 434 YIATNHGYLYHTKLCDMDSVNWN-KILQ---VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (821)
Q Consensus 434 l~~~~~g~~~~~~i~~~~~~~~~-~~~~---~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~ 505 (821)
++++.+|.+..++..+..+.... .+.+ ...+..|++..+... +..+++|..|.+|++|.-++..
T Consensus 375 ~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDkt--------g~rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 375 VSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKT--------GSRLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred EEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeeccc--------CceEEeccCCcceEEEeccccc
Confidence 99999998876654433222211 1111 122445666666543 4789999999999999866543
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-32 Score=258.02 Aligned_cols=280 Identities=22% Similarity=0.345 Sum_probs=245.8
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEee-cCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g-~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|..+|+.+-|. |+ ..+++++ +|.+|++||..+|++.+.++.|.. .+..|.|+..+ ..++.++
T Consensus 107 ~r~~vt~v~~h--p~----~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~-sv~di~~~a~G----------k~l~tcS 169 (406)
T KOG0295|consen 107 HRSSVTRVIFH--PS----EALVVSASEDATIKVFDTETGELERSLRGHTD-SVFDISFDASG----------KYLATCS 169 (406)
T ss_pred cccceeeeeec--cC----ceEEEEecCCceEEEEEccchhhhhhhhcccc-ceeEEEEecCc----------cEEEecC
Confidence 67889999999 98 5566665 489999999999999999999877 49999998553 2455566
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
.|=.+++||.... .+.++.+.+|...|.+++|-| .|.++++++.|++|+.||+.++.+++++.
T Consensus 170 sDl~~~LWd~~~~--------------~~c~ks~~gh~h~vS~V~f~P---~gd~ilS~srD~tik~We~~tg~cv~t~~ 232 (406)
T KOG0295|consen 170 SDLSAKLWDFDTF--------------FRCIKSLIGHEHGVSSVFFLP---LGDHILSCSRDNTIKAWECDTGYCVKTFP 232 (406)
T ss_pred CccchhheeHHHH--------------HHHHHHhcCcccceeeEEEEe---cCCeeeecccccceeEEecccceeEEecc
Confidence 6777999998743 467888999999999999999 89999999999999999999999999999
Q ss_pred cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (821)
+|.. .+..++. +.|+.++|+++.|.++++|-.. ..++...+++
T Consensus 233 ~h~e-wvr~v~v---~~DGti~As~s~dqtl~vW~~~---------------------------------t~~~k~~lR~ 275 (406)
T KOG0295|consen 233 GHSE-WVRMVRV---NQDGTIIASCSNDQTLRVWVVA---------------------------------TKQCKAELRE 275 (406)
T ss_pred CchH-hEEEEEe---cCCeeEEEecCCCceEEEEEec---------------------------------cchhhhhhhc
Confidence 8876 3333333 5799999999999999999998 6667778889
Q ss_pred CCCcEEEEEEcCC---------------CCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--
Q 003423 255 HEGSIFRIEWSSC---------------GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-- 317 (821)
Q Consensus 255 h~~~I~~l~~s~~---------------~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-- 317 (821)
|+.+|.+++|.|. ++++.+++.|++||+||+.++.+ + .++.+|...|.+++|+
T Consensus 276 hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c-----L-----~tL~ghdnwVr~~af~p~ 345 (406)
T KOG0295|consen 276 HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC-----L-----FTLVGHDNWVRGVAFSPG 345 (406)
T ss_pred cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE-----E-----EEEecccceeeeeEEcCC
Confidence 9999999999873 25899999999999999999876 4 7999999999999999
Q ss_pred CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 318 DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 318 ~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
+++|+++.+|+++++||+ .++++.++..|.. -+++++|+.+..+++||+-|..+++|..
T Consensus 346 Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h-fvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 346 GKYILSCADDKTLRVWDLKNLQCMKTLEAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CeEEEEEecCCcEEEEEeccceeeeccCCCcc-eeEEEecCCCCceEEeccccceeeeeec
Confidence 799999999999999999 7899999999998 6999999999999999999999999963
No 31
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2e-31 Score=238.11 Aligned_cols=281 Identities=20% Similarity=0.333 Sum_probs=224.9
Q ss_pred eEEe-ecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCC
Q 003423 37 FLLA-GSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQ 115 (821)
Q Consensus 37 ~l~~-g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~ 115 (821)
+|++ |.|-+|++|...||.+.++++..+. .|..+.+.|+ ...|+++|...||+||+...+
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~ds-qVNrLeiTpd-----------k~~LAaa~~qhvRlyD~~S~n------- 72 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDS-QVNRLEITPD-----------KKDLAAAGNQHVRLYDLNSNN------- 72 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCcc-ceeeEEEcCC-----------cchhhhccCCeeEEEEccCCC-------
Confidence 4444 5599999999999999999997666 5999999966 368999999999999999764
Q ss_pred CccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeE
Q 003423 116 PETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALR 195 (821)
Q Consensus 116 ~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~ 195 (821)
-.++.++.+|...|+++.|.. +|++++||+.||+++|||++...+-+.++.. +.+.++.+ .|+..-
T Consensus 73 ------p~Pv~t~e~h~kNVtaVgF~~---dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~--spVn~vvl---hpnQte 138 (311)
T KOG0315|consen 73 ------PNPVATFEGHTKNVTAVGFQC---DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN--SPVNTVVL---HPNQTE 138 (311)
T ss_pred ------CCceeEEeccCCceEEEEEee---cCeEEEecCCCceEEEEeccCcccchhccCC--CCcceEEe---cCCcce
Confidence 247889999999999999999 9999999999999999999986554444322 22333434 367788
Q ss_pred EEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE-ecCCCcEEEEEEcCCCCEEEEE
Q 003423 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKLVSV 274 (821)
Q Consensus 196 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~s~~~~~l~s~ 274 (821)
|++|..+|.|++||+.. ..+...+ ..-..+|.++...|||..|+.+
T Consensus 139 Lis~dqsg~irvWDl~~---------------------------------~~c~~~liPe~~~~i~sl~v~~dgsml~a~ 185 (311)
T KOG0315|consen 139 LISGDQSGNIRVWDLGE---------------------------------NSCTHELIPEDDTSIQSLTVMPDGSMLAAA 185 (311)
T ss_pred EEeecCCCcEEEEEccC---------------------------------CccccccCCCCCcceeeEEEcCCCcEEEEe
Confidence 99999999999999982 1122222 2334679999999999999999
Q ss_pred eCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCC--ceeeEeecccCCC
Q 003423 275 SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDG--KQLKMIKEHIGRG 350 (821)
Q Consensus 275 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~--~~~~~~~~h~~~~ 350 (821)
...|+..+|++-..... ..++++ ..+..|.+.+..+.++ .++|++++.|.+++||+.++ +....+.+|+. -
T Consensus 186 nnkG~cyvW~l~~~~~~--s~l~P~--~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r-W 260 (311)
T KOG0315|consen 186 NNKGNCYVWRLLNHQTA--SELEPV--HKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR-W 260 (311)
T ss_pred cCCccEEEEEccCCCcc--ccceEh--hheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc-e
Confidence 99999999999875430 002222 5788999999999999 48999999999999999955 45566888988 5
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEcCC-cCCCcccCC
Q 003423 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESH 388 (821)
Q Consensus 351 i~~l~~~~~~~~l~tg~~dg~I~iwd~~~-~~~~~~~~~ 388 (821)
+|..+|+.++.+|+||+.|+.+++|++.. +.++.+++|
T Consensus 261 vWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 261 VWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred EEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence 99999999999999999999999999954 334444443
No 32
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-29 Score=264.73 Aligned_cols=318 Identities=16% Similarity=0.251 Sum_probs=257.0
Q ss_pred ccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeec
Q 003423 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV 143 (821)
Q Consensus 64 ~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~ 143 (821)
+..+|.+++|+|.. ..+++.--.|.|++||.... .++..+.+|.++|..++|+|
T Consensus 8 kSsRvKglsFHP~r----------PwILtslHsG~IQlWDYRM~---------------tli~rFdeHdGpVRgv~FH~- 61 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKR----------PWILTSLHSGVIQLWDYRMG---------------TLIDRFDEHDGPVRGVDFHP- 61 (1202)
T ss_pred ccccccceecCCCC----------CEEEEeecCceeeeehhhhh---------------hHHhhhhccCCccceeeecC-
Confidence 45589999999874 35677778999999998854 57889999999999999999
Q ss_pred CCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCC
Q 003423 144 CNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (821)
Q Consensus 144 ~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 223 (821)
.+.++++|+.|-.|++|+..+.+++.++.+|-. .+.++.|+ +.--.|++++.|.+|+||+++
T Consensus 62 --~qplFVSGGDDykIkVWnYk~rrclftL~GHlD-YVRt~~FH---heyPWIlSASDDQTIrIWNwq------------ 123 (1202)
T KOG0292|consen 62 --TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD-YVRTVFFH---HEYPWILSASDDQTIRIWNWQ------------ 123 (1202)
T ss_pred --CCCeEEecCCccEEEEEecccceehhhhccccc-eeEEeecc---CCCceEEEccCCCeEEEEecc------------
Confidence 999999999999999999999999999988865 35566665 455689999999999999999
Q ss_pred CcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCC--------
Q 003423 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS-------- 295 (821)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-------- 295 (821)
+..++..++||..-|.|..|+|...+++|+|-|.+||+||+..-+.....+
T Consensus 124 ---------------------sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~ 182 (1202)
T KOG0292|consen 124 ---------------------SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMR 182 (1202)
T ss_pred ---------------------CCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhh
Confidence 788999999999999999999999999999999999999997643321100
Q ss_pred -----------ceeeeceEEeccceeEEEEEEcC--CEEEEEeCCCeEEEEcCC---CceeeEeecccCCCeEEEEEecC
Q 003423 296 -----------IEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGSD---GKQLKMIKEHIGRGIWRCLYDSL 359 (821)
Q Consensus 296 -----------~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~~~dg~i~iwd~~---~~~~~~~~~h~~~~i~~l~~~~~ 359 (821)
...+-...+.||...|+-++|+| ..++||+.|..|++|..+ .-++.+.++|.+ +|.++-|+|.
T Consensus 183 ~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~ 261 (1202)
T KOG0292|consen 183 GQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPH 261 (1202)
T ss_pred ccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC-CcceEEecCc
Confidence 01122258899999999999997 899999999999999983 235778899999 7999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCc-CCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEec
Q 003423 360 SSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (821)
Q Consensus 360 ~~~l~tg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~ 438 (821)
..++++.|+|++|++||++.+ .++++ ....+....++-+|...+++++.
T Consensus 262 q~lIlSnsEDksirVwDm~kRt~v~tf------------------------------rrendRFW~laahP~lNLfAAgH 311 (1202)
T KOG0292|consen 262 QDLILSNSEDKSIRVWDMTKRTSVQTF------------------------------RRENDRFWILAAHPELNLFAAGH 311 (1202)
T ss_pred cceeEecCCCccEEEEecccccceeee------------------------------eccCCeEEEEEecCCcceeeeec
Confidence 999999999999999999653 23332 12245688999999999999988
Q ss_pred CCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCC
Q 003423 439 HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGD 504 (821)
Q Consensus 439 ~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~ 504 (821)
++-+..+++ +.+.+++++. ++.+.-.. +..|+-+|+.+.
T Consensus 312 DsGm~VFkl--------------eRErpa~~v~------------~n~LfYvk-d~~i~~~d~~t~ 350 (1202)
T KOG0292|consen 312 DSGMIVFKL--------------ERERPAYAVN------------GNGLFYVK-DRFIRSYDLRTQ 350 (1202)
T ss_pred CCceEEEEE--------------cccCceEEEc------------CCEEEEEc-cceEEeeecccc
Confidence 776654333 2245555542 24444333 778899998773
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.1e-32 Score=279.13 Aligned_cols=268 Identities=18% Similarity=0.330 Sum_probs=221.5
Q ss_pred eeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcC
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~ 96 (821)
..++|..|+ +| ..+||.|- |.+|++|.+...+ +..++.-.. +.-+. ....|
T Consensus 379 ~~v~ca~fS--dd----ssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~~--l~~~d-------------------~~sad 430 (707)
T KOG0263|consen 379 QGVTCAEFS--DD----SSMLACGFVDSSVRVWSLTPKK-LKKLKDASD--LSNID-------------------TESAD 430 (707)
T ss_pred CcceeEeec--CC----cchhhccccccEEEEEecchhh-hccccchhh--hcccc-------------------ccccc
Confidence 458999999 88 56888887 8999999987543 233332111 10000 00011
Q ss_pred CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccC
Q 003423 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (821)
Q Consensus 97 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~ 176 (821)
-.+.+.|-.. ......+.||.++|+.+.|+| +.++|++|+.|++||+|.+.+..++...++|
T Consensus 431 ~~~~~~D~~~---------------~~~~~~L~GH~GPVyg~sFsP---d~rfLlScSED~svRLWsl~t~s~~V~y~GH 492 (707)
T KOG0263|consen 431 VDVDMLDDDS---------------SGTSRTLYGHSGPVYGCSFSP---DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH 492 (707)
T ss_pred hhhhhccccC---------------CceeEEeecCCCceeeeeecc---cccceeeccCCcceeeeecccceeEEEecCC
Confidence 1122222221 123456889999999999999 9999999999999999999999998888866
Q ss_pred cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCC
Q 003423 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (821)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 256 (821)
.. .+|.+.| +|.|.++|+|+.|++-++|... ...+.+.+.||-
T Consensus 493 ~~-PVwdV~F---~P~GyYFatas~D~tArLWs~d---------------------------------~~~PlRifaghl 535 (707)
T KOG0263|consen 493 LA-PVWDVQF---APRGYYFATASHDQTARLWSTD---------------------------------HNKPLRIFAGHL 535 (707)
T ss_pred Cc-ceeeEEe---cCCceEEEecCCCceeeeeecc---------------------------------cCCchhhhcccc
Confidence 54 5777877 6889999999999999999998 567788889999
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEc
Q 003423 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334 (821)
Q Consensus 257 ~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd 334 (821)
+.|.|+.|+|+..|++|||.|++||+||+.++.. + ..+.||.++|.+++|+ +.+|++|++||.|++||
T Consensus 536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-----V-----RiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-----V-----RIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred cccceEEECCcccccccCCCCceEEEEEcCCCcE-----E-----EEecCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence 9999999999999999999999999999999876 5 5889999999999999 68999999999999999
Q ss_pred C-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 335 S-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 335 ~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
+ .++.+..+.+|.+ .|.++.|+.+|..||+||.|.+|++||+..
T Consensus 606 l~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 606 LANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9 7899999999988 799999999999999999999999999954
No 34
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=8.1e-28 Score=249.98 Aligned_cols=574 Identities=12% Similarity=0.145 Sum_probs=381.3
Q ss_pred CCCCcceeeccce-------eeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCC-eeeeEEEeeccccEEeEEec
Q 003423 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG-TLIRPFQVFHGIRLHGISCN 74 (821)
Q Consensus 3 ~~~i~~w~~~~~~-------~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~-~~~~~~~~~~~~~i~~i~~~ 74 (821)
+++..++|.++.. +...|+||+-. ..++.++.+..|.+|-. | ...+.+..+. ..|+-+..-
T Consensus 55 gksfqvYd~~kl~ll~vs~~lp~~I~alas~--------~~~vy~A~g~~i~~~~r--gk~i~~~~~~~~-a~v~~l~~f 123 (910)
T KOG1539|consen 55 GKSFQVYDVNKLNLLFVSKPLPDKITALASD--------KDYVYVASGNKIYAYAR--GKHIRHTTLLHG-AKVHLLLPF 123 (910)
T ss_pred CceEEEEeccceEEEEecCCCCCceEEEEec--------CceEEEecCcEEEEEEc--cceEEEEecccc-ceEEEEeee
Confidence 4455667766644 45679999977 45899999999999873 4 3344444444 467777655
Q ss_pred cccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEE
Q 003423 75 FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (821)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~ 154 (821)
.+ .++++--++.+.+|+......+. . ++ ..-++...+.|+++. +| +.-=+.++.|+
T Consensus 124 Ge------------~lia~d~~~~l~vw~~s~~~~e~-~--------l~-~~~~~~~~~~Ital~-HP-~TYLNKIvvGs 179 (910)
T KOG1539|consen 124 GE------------HLIAVDISNILFVWKTSSIQEEL-Y--------LQ-STFLKVEGDFITALL-HP-STYLNKIVVGS 179 (910)
T ss_pred cc------------eEEEEEccCcEEEEEeccccccc-c--------cc-ceeeeccCCceeeEe-cc-hhheeeEEEee
Confidence 33 58888889999999988631000 0 11 222333334477774 55 11235688899
Q ss_pred CCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCc
Q 003423 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (821)
Q Consensus 155 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (821)
.+|.+.+|++.+++.+.+++... ..+.++. .+|--..+|.|..+|+|.++++.
T Consensus 180 ~~G~lql~Nvrt~K~v~~f~~~~-s~IT~ie---qsPaLDVVaiG~~~G~ViifNlK----------------------- 232 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGKVVYTFQEFF-SRITAIE---QSPALDVVAIGLENGTVIIFNLK----------------------- 232 (910)
T ss_pred cCCcEEEEEeccCcEEEEecccc-cceeEec---cCCcceEEEEeccCceEEEEEcc-----------------------
Confidence 99999999999999999998776 3444443 25677799999999999999999
Q ss_pred ceeeecccccceeeEEEEecCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEE
Q 003423 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (821)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 313 (821)
..+.+.+++...+.|+.++|..||+ .|++++..|.+-+||+...+. .. .....|.+.|..
T Consensus 233 ----------~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl-----~~----v~~nah~~sv~~ 293 (910)
T KOG1539|consen 233 ----------FDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL-----IN----VTRNAHYGSVTG 293 (910)
T ss_pred ----------cCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee-----ee----eeeccccCCccc
Confidence 6677888874459999999999996 568888889999999998765 32 355578888888
Q ss_pred EEEc--CCEEEEEeCCCeEEEEcC---CC--ceeeEeecccCCCeEEEEEe-cCCCEEEEEeCCCcEEEEEcCCcCCCcc
Q 003423 314 CCLT--DSFIITAGEDCTCRVWGS---DG--KQLKMIKEHIGRGIWRCLYD-SLSSLLVTAGFDSAIKVHQFQAFLPGSL 385 (821)
Q Consensus 314 v~~~--~~~l~s~~~dg~i~iwd~---~~--~~~~~~~~h~~~~i~~l~~~-~~~~~l~tg~~dg~I~iwd~~~~~~~~~ 385 (821)
..|. ...++|++.|+.+++|=. +| +.++.-.+|.. +..++.|. .++..+.+++.|++.+.+++......+-
T Consensus 294 ~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~-Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~ 372 (910)
T KOG1539|consen 294 ATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA-PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQE 372 (910)
T ss_pred ceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC-CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHh
Confidence 8887 479999999999999966 33 56667778888 78999987 6789999999999999998833111110
Q ss_pred cCC--ccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeec------CCeEEEEecCCcEEEEEecCCCcceeeE
Q 003423 386 ESH--PEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS------EDTLYIATNHGYLYHTKLCDMDSVNWNK 457 (821)
Q Consensus 386 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~------~~~~l~~~~~g~~~~~~i~~~~~~~~~~ 457 (821)
-++ ..... ..... .......-.+|..+++.. ++.+.+-.+....+.|+..+...+.|.-
T Consensus 373 l~~~~~~~~~--kk~~~-----------~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L 439 (910)
T KOG1539|consen 373 LGQLHNKKRA--KKVNV-----------FSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL 439 (910)
T ss_pred hccccccccc--ccccc-----------cchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe
Confidence 000 00000 00000 000011112345555443 2233333344456655555544433321
Q ss_pred eeec--cCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCC
Q 003423 458 ILQV--SEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGH 535 (821)
Q Consensus 458 ~~~~--~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (821)
-... .....+.++.+.. .+++.++|...|.|.+|+++.+..+.... -.+.+...+.++. ...-+
T Consensus 440 ~~~~~~~~~~~~~av~vs~--------CGNF~~IG~S~G~Id~fNmQSGi~r~sf~----~~~ah~~~V~gla--~D~~n 505 (910)
T KOG1539|consen 440 DPKRFKKDDINATAVCVSF--------CGNFVFIGYSKGTIDRFNMQSGIHRKSFG----DSPAHKGEVTGLA--VDGTN 505 (910)
T ss_pred cCccccccCcceEEEEEec--------cCceEEEeccCCeEEEEEcccCeeecccc----cCccccCceeEEE--ecCCC
Confidence 1110 0233444554433 56999999999999999998876532211 1223333333332 23346
Q ss_pred eEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCccccc
Q 003423 536 RFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLN 615 (821)
Q Consensus 536 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~ 615 (821)
+.+++++.+|.+++||.... .+...+.- ...++++..+-...++|.+..|=.|+++|+..
T Consensus 506 ~~~vsa~~~Gilkfw~f~~k--------------~l~~~l~l--~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t---- 565 (910)
T KOG1539|consen 506 RLLVSAGADGILKFWDFKKK--------------VLKKSLRL--GSSITGIVYHRVSDLLAIALDDFSIRVVDVVT---- 565 (910)
T ss_pred ceEEEccCcceEEEEecCCc--------------ceeeeecc--CCCcceeeeeehhhhhhhhcCceeEEEEEchh----
Confidence 88999999999999999876 34444423 44588888888888999999999999999873
Q ss_pred ccccccccccCcccccccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEeecCCceeeeeeeeeeeeeeeeeeecc
Q 003423 616 DKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSA 695 (821)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (821)
......|. .| ...||.++|+ +++..|++++.|++||+||+....+.. +-.+.....
T Consensus 566 ---------~kvvR~f~-gh-~nritd~~FS---~DgrWlisasmD~tIr~wDlpt~~lID----~~~vd~~~~------ 621 (910)
T KOG1539|consen 566 ---------RKVVREFW-GH-GNRITDMTFS---PDGRWLISASMDSTIRTWDLPTGTLID----GLLVDSPCT------ 621 (910)
T ss_pred ---------hhhhHHhh-cc-ccceeeeEeC---CCCcEEEEeecCCcEEEEeccCcceee----eEecCCcce------
Confidence 23345554 57 4589999999 688999999999999999996643221 111111111
Q ss_pred CCCccCCCCCeEEEeeec-ccEEEEECccccEEEEE
Q 003423 696 ENNSIDLASCNYAAGFAS-TDFIIWNLITEAKVVQI 730 (821)
Q Consensus 696 ~~~~~~~~~~~l~~g~~~-~~~~vW~~~~~~~l~~i 730 (821)
...+.+++++|++.-.| ..+++|.-.+.-.-.++
T Consensus 622 -sls~SPngD~LAT~Hvd~~gIylWsNkslF~~vs~ 656 (910)
T KOG1539|consen 622 -SLSFSPNGDFLATVHVDQNGIYLWSNKSLFKSVST 656 (910)
T ss_pred -eeEECCCCCEEEEEEecCceEEEEEchhHheeccc
Confidence 22344568888888887 67999975555444433
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.8e-31 Score=246.08 Aligned_cols=280 Identities=19% Similarity=0.327 Sum_probs=241.1
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|.+-|.|+++. |. ..++++|+ |++++|||+.+|++..++..+.. .|.++++++.+ .+++.+.
T Consensus 150 HlgWVr~vavd--P~----n~wf~tgs~DrtikIwDlatg~LkltltGhi~-~vr~vavS~rH----------pYlFs~g 212 (460)
T KOG0285|consen 150 HLGWVRSVAVD--PG----NEWFATGSADRTIKIWDLATGQLKLTLTGHIE-TVRGVAVSKRH----------PYLFSAG 212 (460)
T ss_pred ccceEEEEeeC--CC----ceeEEecCCCceeEEEEcccCeEEEeecchhh-eeeeeeecccC----------ceEEEec
Confidence 88999999999 87 78999988 89999999999999999998766 59999999775 4678888
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
.|+.|+.||++.. +.++.+.||-..|+|++.+| .-+.|+||+.|.++||||+++...+..+.
T Consensus 213 edk~VKCwDLe~n---------------kvIR~YhGHlS~V~~L~lhP---Tldvl~t~grDst~RvWDiRtr~~V~~l~ 274 (460)
T KOG0285|consen 213 EDKQVKCWDLEYN---------------KVIRHYHGHLSGVYCLDLHP---TLDVLVTGGRDSTIRVWDIRTRASVHVLS 274 (460)
T ss_pred CCCeeEEEechhh---------------hhHHHhccccceeEEEeccc---cceeEEecCCcceEEEeeecccceEEEec
Confidence 8999999999854 57888999999999999999 88999999999999999999999999999
Q ss_pred cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (821)
+|...+ .++.+ .+-+-.+++|+-|++|++||+. .++...++..
T Consensus 275 GH~~~V-~~V~~---~~~dpqvit~S~D~tvrlWDl~---------------------------------agkt~~tlt~ 317 (460)
T KOG0285|consen 275 GHTNPV-ASVMC---QPTDPQVITGSHDSTVRLWDLR---------------------------------AGKTMITLTH 317 (460)
T ss_pred CCCCcc-eeEEe---ecCCCceEEecCCceEEEeeec---------------------------------cCceeEeeec
Confidence 887654 34444 2445679999999999999999 6677888889
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEEE
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iw 333 (821)
|...|.+++.+|....+||++.| .|+-|++..+.. . ..+.+|.+-|.++... ++++++|++.|.+..|
T Consensus 318 hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f-----~-----~nlsgh~~iintl~~nsD~v~~~G~dng~~~fw 386 (460)
T KOG0285|consen 318 HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEF-----L-----QNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFW 386 (460)
T ss_pred ccceeeEEecCCchhhhhccCCc-cceeccCCccch-----h-----hccccccceeeeeeeccCceEEEcCCceEEEEE
Confidence 99999999999999999999987 599999998866 4 4689999999999987 8999999999999999
Q ss_pred cC-CCceeeEe---ec----ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 334 GS-DGKQLKMI---KE----HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 334 d~-~~~~~~~~---~~----h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
|. +|...+.. .. ....+|.+.+|+..|..|++|..|.+|++|.-+
T Consensus 387 dwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 387 DWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 98 44332222 11 111358999999999999999999999999764
No 36
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.8e-28 Score=245.85 Aligned_cols=481 Identities=14% Similarity=0.143 Sum_probs=328.4
Q ss_pred CCCCCcceeeccceee---------eeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEE
Q 003423 2 GKKDLSEWRLDVGQYL---------GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (821)
Q Consensus 2 ~~~~i~~w~~~~~~~~---------~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~ 72 (821)
.++.|++|++.+.-+. +.|.+|+|+ +. ++|+-+|-+|.|.-||+.+++++..++.. +..|.+|+
T Consensus 45 t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~----~RLFS~g~sg~i~EwDl~~lk~~~~~d~~-gg~IWsia 117 (691)
T KOG2048|consen 45 TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EG----GRLFSSGLSGSITEWDLHTLKQKYNIDSN-GGAIWSIA 117 (691)
T ss_pred cCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cC----CeEEeecCCceEEEEecccCceeEEecCC-CcceeEEE
Confidence 4789999999998744 348899999 76 78888888999999999999999998864 45899999
Q ss_pred eccccCCCCCCccceeeEEEEE-cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEE
Q 003423 73 CNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (821)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~ 151 (821)
.+|.. ..++++ .||.+..++...+. ++....+...++.|++++|+| ++..|+
T Consensus 118 i~p~~-----------~~l~IgcddGvl~~~s~~p~~-------------I~~~r~l~rq~sRvLslsw~~---~~~~i~ 170 (691)
T KOG2048|consen 118 INPEN-----------TILAIGCDDGVLYDFSIGPDK-------------ITYKRSLMRQKSRVLSLSWNP---TGTKIA 170 (691)
T ss_pred eCCcc-----------ceEEeecCCceEEEEecCCce-------------EEEEeecccccceEEEEEecC---CccEEE
Confidence 99663 244544 67866666665443 455566777789999999999 999999
Q ss_pred EEECCCcEEEEEccCCceeE-------EEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCC
Q 003423 152 IGCSDNSIRVWDISNSSIIL-------EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (821)
Q Consensus 152 t~~~d~~i~iwd~~~~~~~~-------~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 224 (821)
+|+.||.|++||..++..+. .+......++|++.+. ....|++|..-|.|.+||..
T Consensus 171 ~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L----rd~tI~sgDS~G~V~FWd~~------------- 233 (691)
T KOG2048|consen 171 GGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL----RDSTIASGDSAGTVTFWDSI------------- 233 (691)
T ss_pred ecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe----ecCcEEEecCCceEEEEccc-------------
Confidence 99999999999999988765 2234467899999984 55689999999999999998
Q ss_pred cccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEE
Q 003423 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (821)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 304 (821)
.+..++.+..|.+.|.+++..+++.++++++.|+.|.-+...+... +.+.....
T Consensus 234 --------------------~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~------~wv~~~~r 287 (691)
T KOG2048|consen 234 --------------------FGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS------EWVINSRR 287 (691)
T ss_pred --------------------CcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc------ceeeeccc
Confidence 6677888889999999999999999999999999999998877643 23322456
Q ss_pred eccceeEEEEEEcCCEEEEEeCCCeEEEEcCCCceeeEeecccCC---CeEE-EEEecCCCEEEEEeCCCcEEEEEcCCc
Q 003423 305 YGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGR---GIWR-CLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (821)
Q Consensus 305 ~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~---~i~~-l~~~~~~~~l~tg~~dg~I~iwd~~~~ 380 (821)
..|...|.+++..+..+++||.|.++.+-..... ....|..+ +-.+ +...| .++|+.--.+..+.+|.+...
T Consensus 288 ~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~---~~~~h~~~~~~p~~~~v~~a~-~~~L~~~w~~h~v~lwrlGS~ 363 (691)
T KOG2048|consen 288 DLHAHDVRSMAVIENALISGGRDFTLAICSSREF---KNMDHRQKNLFPASDRVSVAP-ENRLLVLWKAHGVDLWRLGSV 363 (691)
T ss_pred cCCcccceeeeeecceEEecceeeEEEEcccccc---CchhhhccccccccceeecCc-cceEEEEeccccccceeccCc
Confidence 7788899999999999999999999988765321 11111110 0011 12222 234444444555666666332
Q ss_pred CCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeee
Q 003423 381 LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQ 460 (821)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~ 460 (821)
..+.-. +....+ +........|.+.+.+|+|.+++.+.-.+...+++......+...+-.
T Consensus 364 ~~~g~~---------~~~~Ll-----------kl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~ 423 (691)
T KOG2048|consen 364 ILQGEY---------NYIHLL-----------KLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDD 423 (691)
T ss_pred cccccc---------Chhhhe-----------eeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEecc
Confidence 111100 001111 111222356999999999999998876666666665544333222222
Q ss_pred ccCCc-ceEEEeccCCCCCCCCCCCcEEEEec-CCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEE
Q 003423 461 VSEGM-PIICMDLLSNEPKYPCGIDDWVALGD-GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFI 538 (821)
Q Consensus 461 ~~~~~-~i~~~~~~~~~~~~s~~~~~~l~~g~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 538 (821)
..... .+..+.+. .+.+.++..+ ....+.++++.+........ ..+.. ..........+++|+|+
T Consensus 424 ~~~~~~~a~~i~ft--------id~~k~~~~s~~~~~le~~el~~ps~kel~~----~~~~~-~~~~I~~l~~SsdG~yi 490 (691)
T KOG2048|consen 424 VPLALLDASAISFT--------IDKNKLFLVSKNIFSLEEFELETPSFKELKS----IQSQA-KCPSISRLVVSSDGNYI 490 (691)
T ss_pred chhhhccceeeEEE--------ecCceEEEEecccceeEEEEecCcchhhhhc----ccccc-CCCcceeEEEcCCCCEE
Confidence 11111 11112221 1334444444 66777777776644322111 11110 11111223577899999
Q ss_pred EEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEee-cCCCEEEEEcCCCcEEEEecCc
Q 003423 539 FTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDAS-FEDEVLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 539 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s-~~~~~L~sgs~dG~i~iw~~~~ 611 (821)
++.+..|.|.+|+++.... .+.. ..-...||+++|+ ++.+.|+.+..++.++-||++.
T Consensus 491 aa~~t~g~I~v~nl~~~~~------------~~l~---~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 491 AAISTRGQIFVYNLETLES------------HLLK---VRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred EEEeccceEEEEEccccee------------ecch---hccCcceeeeeccccccCcEEEEecCCeEEEEecch
Confidence 9999999999999987621 1111 1224679999999 5677899999999999999953
No 37
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=4e-32 Score=259.34 Aligned_cols=279 Identities=18% Similarity=0.278 Sum_probs=228.8
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g 95 (821)
-..+|..+.+. |+ ++++|.++..|...+|+..+-.....++.|+. .|.++.|+.++ ..++..-.
T Consensus 95 vkc~V~~v~Wt--Pe---GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs-~Vr~m~ws~~g----------~wmiSgD~ 158 (464)
T KOG0284|consen 95 VKCPVNVVRWT--PE---GRRLLTGSQSGEFTLWNGTSFNFETILQAHDS-PVRTMKWSHNG----------TWMISGDK 158 (464)
T ss_pred cccceeeEEEc--CC---CceeEeecccccEEEecCceeeHHHHhhhhcc-cceeEEEccCC----------CEEEEcCC
Confidence 44679999999 99 44444445579999999865443333455444 89999999663 24555556
Q ss_pred CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCC-CcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 96 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
++.|++|+.... .++.+.+|. ..|++++|+| +...+++|+.||+|+|||....+.-..+.
T Consensus 159 gG~iKyWqpnmn----------------nVk~~~ahh~eaIRdlafSp---nDskF~t~SdDg~ikiWdf~~~kee~vL~ 219 (464)
T KOG0284|consen 159 GGMIKYWQPNMN----------------NVKIIQAHHAEAIRDLAFSP---NDSKFLTCSDDGTIKIWDFRMPKEERVLR 219 (464)
T ss_pred CceEEecccchh----------------hhHHhhHhhhhhhheeccCC---CCceeEEecCCCeEEEEeccCCchhheec
Confidence 799999998743 355556665 8999999999 88899999999999999998877766676
Q ss_pred cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (821)
+|.- .+.++.++ |...+||+|+.|+.|++||.+ ++.++.++.+
T Consensus 220 GHgw-dVksvdWH---P~kgLiasgskDnlVKlWDpr---------------------------------Sg~cl~tlh~ 262 (464)
T KOG0284|consen 220 GHGW-DVKSVDWH---PTKGLIASGSKDNLVKLWDPR---------------------------------SGSCLATLHG 262 (464)
T ss_pred cCCC-CcceeccC---CccceeEEccCCceeEeecCC---------------------------------Ccchhhhhhh
Confidence 6543 34566654 677899999999999999999 8899999999
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEE
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCR 331 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~ 331 (821)
|+..|..+.|+|++++|+|+|.|..++++|+++.+. + ..+.+|...|+++.|+ +++|.+|+.||.+.
T Consensus 263 HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE-----l-----~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 263 HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE-----L-----FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH-----H-----HHhhcchhhheeeccccccccceeeccCCCceE
Confidence 999999999999999999999999999999996443 3 6889999999999999 48999999999999
Q ss_pred EEcCC-CceeeEe-ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 332 VWGSD-GKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 332 iwd~~-~~~~~~~-~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
.|.+. .+++..+ ..|.+ .||+++|+|-|.+|++|+.|.++++|.-
T Consensus 333 h~~v~~~~p~~~i~~AHd~-~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 333 HWVVGLEEPLGEIPPAHDG-EIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred EEeccccccccCCCccccc-ceeeeeccccceeEeecCCCcceeeecc
Confidence 99984 4444443 45666 7999999999999999999999999976
No 38
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.98 E-value=2.6e-28 Score=248.58 Aligned_cols=579 Identities=15% Similarity=0.197 Sum_probs=359.4
Q ss_pred CCCcceeeccce-------eeeeeEEEEEeccCCCCCCcc---eEEee-cCCeEEEEECCCCee--eeEEEeeccccEEe
Q 003423 4 KDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLP---FLLAG-SGSQVLLYDLEAGTL--IRPFQVFHGIRLHG 70 (821)
Q Consensus 4 ~~i~~w~~~~~~-------~~~~Vt~l~~~~~p~~~~~~~---~l~~g-~~~~i~iwd~~t~~~--~~~~~~~~~~~i~~ 70 (821)
..|.+||..+.. |.++|+|+.+. |+ .. ++++| +|+.|.+|.+..... +..++. ....+.+
T Consensus 34 ~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l--~~----s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~c 106 (764)
T KOG1063|consen 34 PAIAVADPEKILIVTTLDGHVARVNCVHWL--PT----SEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKECVC 106 (764)
T ss_pred ceEEEeCcccceeEEeccCCccceEEEEEc--cc----ccccceEEEccCCCcEEEEEEeehheEEEEeecC-cceeEEE
Confidence 456777776652 88999999999 87 33 55555 499999999984333 333333 2222333
Q ss_pred EEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecC--------CCCCCC-------C--C-----------------
Q 003423 71 ISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFEL--------SPNSQY-------Q--P----------------- 116 (821)
Q Consensus 71 i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~--------~~~~~~-------~--~----------------- 116 (821)
+.-.+. .......++.+.+|+.+..+ ...+.. . +
T Consensus 107 v~a~~~------------~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~ 174 (764)
T KOG1063|consen 107 VVARSS------------VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLY 174 (764)
T ss_pred EEeeee------------EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEe
Confidence 322211 11112456777777763221 000000 0 0
Q ss_pred -ccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc---------------------eeEEE-
Q 003423 117 -ETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS---------------------IILEV- 173 (821)
Q Consensus 117 -~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~---------------------~~~~~- 173 (821)
+..-.++....+.||.|||.+++|.....+.-+||+++.|..||||.+.-+. .+.++
T Consensus 175 s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~ 254 (764)
T KOG1063|consen 175 SSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQ 254 (764)
T ss_pred ccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEE
Confidence 0011357788999999999999998733334589999999999999885322 01011
Q ss_pred --------ccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccc
Q 003423 174 --------HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (821)
Q Consensus 174 --------~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (821)
-..+..-++++.+ .|.+..|++++.|.++.+|....+. .+|. .
T Consensus 255 ~~is~eall~GHeDWV~sv~W---~p~~~~LLSASaDksmiiW~pd~~t-----------------------GiWv---~ 305 (764)
T KOG1063|consen 255 YRISFEALLMGHEDWVYSVWW---HPEGLDLLSASADKSMIIWKPDENT-----------------------GIWV---D 305 (764)
T ss_pred EEEehhhhhcCcccceEEEEE---ccchhhheecccCcceEEEecCCcc-----------------------ceEE---E
Confidence 1233345677665 4678899999999999999987210 0000 1
Q ss_pred eeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEE
Q 003423 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT 323 (821)
Q Consensus 246 ~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s 323 (821)
.-.+....|..+.-.+..|+|+++.+++-+.-|-.++|...+. ..........||...|.++.|+ +.+|+|
T Consensus 306 ~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~-------~~w~~~~~iSGH~~~V~dv~W~psGeflLs 378 (764)
T KOG1063|consen 306 VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK-------TFWTQEPVISGHVDGVKDVDWDPSGEFLLS 378 (764)
T ss_pred EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc-------cceeeccccccccccceeeeecCCCCEEEE
Confidence 1222333355667899999999999999999999999993332 1222224778999999999999 799999
Q ss_pred EeCCCeEEEEcCCCc-----eeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCC--------cccCC--
Q 003423 324 AGEDCTCRVWGSDGK-----QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPG--------SLESH-- 388 (821)
Q Consensus 324 ~~~dg~i~iwd~~~~-----~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~--------~~~~~-- 388 (821)
.|.|.+-|++-.-|+ ++..-+-|.. .++|+++-+....+++|..+..+|+|+....... .+.+.
T Consensus 379 vs~DQTTRlFa~wg~q~~wHEiaRPQiHGy-Dl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~ 457 (764)
T KOG1063|consen 379 VSLDQTTRLFARWGRQQEWHEIARPQIHGY-DLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDE 457 (764)
T ss_pred eccccceeeecccccccceeeecccccccc-cceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchh
Confidence 999999999876332 2222233444 4889999886778899999999999997431111 01100
Q ss_pred ------ccccccCC---------Ccce----E---------EeecCCcccc---------eeccCCCCcceEEEEeecCC
Q 003423 389 ------PEAKEFNG---------RTEI----F---------SIKIPNFSEQ---------IRLTDSKSEYVRCLHLTSED 431 (821)
Q Consensus 389 ------~~~~~~~~---------~~~~----~---------~~~~~~~~~~---------~~~~~~~~~~i~~l~f~~~~ 431 (821)
...+..++ .+.. . .+..|..+.+ ...+-+|...|.+++.+|++
T Consensus 458 ~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g 537 (764)
T KOG1063|consen 458 LPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG 537 (764)
T ss_pred cccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC
Confidence 00000000 0000 0 0011111111 11233788899999999999
Q ss_pred eEEEEecCCc---EEEEEecCCCcceeeEeee-ccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCC
Q 003423 432 TLYIATNHGY---LYHTKLCDMDSVNWNKILQ-VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHT 507 (821)
Q Consensus 432 ~~l~~~~~g~---~~~~~i~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~ 507 (821)
.+++++.... .-.+.+|+..+ |.++.. ..+.-.++.+.+++ ++++|++.+.|.++.+|........
T Consensus 538 nliASaCKS~~~ehAvI~lw~t~~--W~~~~~L~~HsLTVT~l~FSp--------dg~~LLsvsRDRt~sl~~~~~~~~~ 607 (764)
T KOG1063|consen 538 NLIASACKSSLKEHAVIRLWNTAN--WLQVQELEGHSLTVTRLAFSP--------DGRYLLSVSRDRTVSLYEVQEDIKD 607 (764)
T ss_pred CEEeehhhhCCccceEEEEEeccc--hhhhheecccceEEEEEEECC--------CCcEEEEeecCceEEeeeeecccch
Confidence 9999875443 33446776443 444432 22456677777755 5699999999999999997543221
Q ss_pred CcceeEEeeccCccceeeeeEEe--ecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEE
Q 003423 508 PQLSFTFTWSAGIERQLLGTYWC--KSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMC 585 (821)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 585 (821)
...++. ......++|. ++|++.+++|++.|.+|++|....... .. +.-.+ ...++..||+
T Consensus 608 ---e~~fa~----~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d-~~--------i~~~a--~~~~~~aVTA 669 (764)
T KOG1063|consen 608 ---EFRFAC----LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD-KY--------ISRFA--CLKFSLAVTA 669 (764)
T ss_pred ---hhhhcc----ccccceEEEEcccCcccceeEEecCCceEEEEeccCchh-hh--------hhhhc--hhccCCceee
Confidence 111222 1223344554 447889999999999999999887621 00 00001 2356889999
Q ss_pred EEeecC-----CCEEEEEcCCCcEEEEecCcccccccccccccccCccccccc-ccCCcceEEEEEEecC-------CCc
Q 003423 586 LDASFE-----DEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKG-AHGISTVSTLSVAKLR-------SNQ 652 (821)
Q Consensus 586 l~~s~~-----~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~Vt~i~~~~~~-------~~~ 652 (821)
+++.|- +..++.|-+.|.|.+|......... .... .......... .| .+.|+.++|.|.. .+.
T Consensus 670 v~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~-~~~~--~~~~~~l~~~~~~-~~aV~rl~w~p~~~~~~~~~~~~ 745 (764)
T KOG1063|consen 670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQV-TVGT--FNLDTRLCATIGP-DSAVNRLLWRPTCSDDWVEDKEW 745 (764)
T ss_pred EEeeccccccccceEEEEecccEEEEEecccccccc-ccee--eeeccccccccCh-HHhhheeEeccccccccccccce
Confidence 999862 3378999999999999976321000 0000 0000011111 33 5789999999863 233
Q ss_pred eEEEEecCCCeEEEEEee
Q 003423 653 TEIRSTGGDGCICYLEYD 670 (821)
Q Consensus 653 ~~l~t~g~Dg~i~iw~~~ 670 (821)
..|+.+|.|-++||++++
T Consensus 746 l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 746 LNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eEEeeecccceeEEeecc
Confidence 468999999999999874
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=4.6e-32 Score=253.06 Aligned_cols=254 Identities=18% Similarity=0.309 Sum_probs=217.0
Q ss_pred CCCCCcceeeccce-------eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEe
Q 003423 2 GKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (821)
Q Consensus 2 ~~~~i~~w~~~~~~-------~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~ 73 (821)
.|++|+|||..+-+ |.|.|.||.|. .+++++|+ |.+|+|||+++|+++.++-.|- ..|..+.|
T Consensus 215 rDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--------~rviisGSSDsTvrvWDv~tge~l~tlihHc-eaVLhlrf 285 (499)
T KOG0281|consen 215 RDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--------ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHC-EAVLHLRF 285 (499)
T ss_pred ccCceEEeccccHHHHHhhhcCCCcEEeeecc--------ceEEEecCCCceEEEEeccCCchhhHHhhhc-ceeEEEEE
Confidence 48999999999876 89999999998 56888887 8999999999999999887544 47999999
Q ss_pred ccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEE
Q 003423 74 NFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (821)
Q Consensus 74 ~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~ 153 (821)
+.. +++.++.|.++.+|++.... .....+.+.||...|..+.|+ .++++++
T Consensus 286 ~ng------------~mvtcSkDrsiaVWdm~sps------------~it~rrVLvGHrAaVNvVdfd-----~kyIVsA 336 (499)
T KOG0281|consen 286 SNG------------YMVTCSKDRSIAVWDMASPT------------DITLRRVLVGHRAAVNVVDFD-----DKYIVSA 336 (499)
T ss_pred eCC------------EEEEecCCceeEEEeccCch------------HHHHHHHHhhhhhheeeeccc-----cceEEEe
Confidence 833 68888899999999998543 245677899999999999995 4699999
Q ss_pred ECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCC
Q 003423 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (821)
Q Consensus 154 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 233 (821)
+.|.+|++|++.+++.++.+.+|.+.+.. +. -.+.++++|+.|++|++||+.
T Consensus 337 SgDRTikvW~~st~efvRtl~gHkRGIAC-lQ-----Yr~rlvVSGSSDntIRlwdi~---------------------- 388 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTCEFVRTLNGHKRGIAC-LQ-----YRDRLVVSGSSDNTIRLWDIE---------------------- 388 (499)
T ss_pred cCCceEEEEeccceeeehhhhccccccee-hh-----ccCeEEEecCCCceEEEEecc----------------------
Confidence 99999999999999999999999987643 33 378999999999999999999
Q ss_pred cceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEE
Q 003423 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (821)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 313 (821)
.+.++..+.||+.-|.|+.| |.+.++||+.||+|++||+........ ....+....+..|+++|..
T Consensus 389 -----------~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra-~~~~~Cl~~lv~hsgRVFr 454 (499)
T KOG0281|consen 389 -----------CGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRA-PASTLCLRTLVEHSGRVFR 454 (499)
T ss_pred -----------ccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcc-cccchHHHhhhhccceeEE
Confidence 78889999999999999999 567899999999999999988654100 0111111467789999999
Q ss_pred EEEcCCEEEEEeCCCeEEEEcC
Q 003423 314 CCLTDSFIITAGEDCTCRVWGS 335 (821)
Q Consensus 314 v~~~~~~l~s~~~dg~i~iwd~ 335 (821)
+.|....+++++.|.+|.+||.
T Consensus 455 LQFD~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 455 LQFDEFQIISSSHDDTILIWDF 476 (499)
T ss_pred EeecceEEEeccCCCeEEEEEc
Confidence 9999999999999999999998
No 40
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.8e-29 Score=226.00 Aligned_cols=283 Identities=17% Similarity=0.219 Sum_probs=224.4
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCC---eeeeEEEeeccccEEeEEeccccCCCCCCccceeeEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~---~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l 91 (821)
|.+.|-.++++ |. .+.+|+++. |..|+||+...+ .+...+...+.-.|..++|+|.+ .++.
T Consensus 13 h~~r~W~~awh--p~---~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g----------~~La 77 (312)
T KOG0645|consen 13 HKDRVWSVAWH--PG---KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG----------RYLA 77 (312)
T ss_pred CCCcEEEEEec--cC---CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC----------cEEE
Confidence 67889999999 75 355777766 899999999853 34444444444579999999774 2344
Q ss_pred EEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc---
Q 003423 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--- 168 (821)
Q Consensus 92 ~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~--- 168 (821)
+++-|.++.||.-..+. ++.+..+.||...|.|++|++ +|.+||||+.|..|-||.+..+.
T Consensus 78 ~aSFD~t~~Iw~k~~~e-------------fecv~~lEGHEnEVK~Vaws~---sG~~LATCSRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 78 SASFDATVVIWKKEDGE-------------FECVATLEGHENEVKCVAWSA---SGNYLATCSRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred EeeccceEEEeecCCCc-------------eeEEeeeeccccceeEEEEcC---CCCEEEEeeCCCeEEEEEecCCCcEE
Confidence 44569999999876443 788999999999999999999 99999999999999999998554
Q ss_pred eeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceee
Q 003423 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (821)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (821)
+...++.|... +..+.++ |...+|++++.|++|++|+-.. .....+
T Consensus 142 c~aVL~~HtqD-VK~V~WH---Pt~dlL~S~SYDnTIk~~~~~~------------------------------dddW~c 187 (312)
T KOG0645|consen 142 CIAVLQEHTQD-VKHVIWH---PTEDLLFSCSYDNTIKVYRDED------------------------------DDDWEC 187 (312)
T ss_pred EEeeecccccc-ccEEEEc---CCcceeEEeccCCeEEEEeecC------------------------------CCCeeE
Confidence 34445555432 2223332 6778999999999999998761 126688
Q ss_pred EEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCC
Q 003423 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC 328 (821)
Q Consensus 249 ~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg 328 (821)
.+++.+|+..|.+++|+|.|..|++|++|++++||..... ....|+..++.+.|.+..|+|++.|+
T Consensus 188 ~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--------------~~~~~sr~~Y~v~W~~~~IaS~ggD~ 253 (312)
T KOG0645|consen 188 VQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--------------LSGMHSRALYDVPWDNGVIASGGGDD 253 (312)
T ss_pred EEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--------------cchhcccceEeeeecccceEeccCCC
Confidence 9999999999999999999999999999999999986642 33457788999999988999999999
Q ss_pred eEEEEcCCC-------ce-eeEeecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEEcC
Q 003423 329 TCRVWGSDG-------KQ-LKMIKEHIGRGIWRCLYDSL-SSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 329 ~i~iwd~~~-------~~-~~~~~~h~~~~i~~l~~~~~-~~~l~tg~~dg~I~iwd~~ 378 (821)
.|+++.-.. +. ...-..|.. .|.+++|.|. .++|++|+.||.|++|.+.
T Consensus 254 ~i~lf~~s~~~d~p~~~l~~~~~~aHe~-dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 254 AIRLFKESDSPDEPSWNLLAKKEGAHEV-DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEEEEEecCCCCCchHHHHHhhhccccc-ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 999998631 11 123345666 6999999995 6899999999999999873
No 41
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.9e-30 Score=243.28 Aligned_cols=292 Identities=16% Similarity=0.254 Sum_probs=239.0
Q ss_pred eEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcE
Q 003423 180 LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSI 259 (821)
Q Consensus 180 ~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 259 (821)
.++.+.| -|+..++++++.|++|++||.. +++....++||+.+|
T Consensus 110 ~vt~v~~---hp~~~~v~~as~d~tikv~D~~---------------------------------tg~~e~~LrGHt~sv 153 (406)
T KOG0295|consen 110 SVTRVIF---HPSEALVVSASEDATIKVFDTE---------------------------------TGELERSLRGHTDSV 153 (406)
T ss_pred ceeeeee---ccCceEEEEecCCceEEEEEcc---------------------------------chhhhhhhhccccce
Confidence 3444545 3677899999999999999999 667788899999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-C
Q 003423 260 FRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-D 336 (821)
Q Consensus 260 ~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~ 336 (821)
+.|+|+..|++||+|+.|=.+++||..+.. +++ ....+|...|.+++|- ++++++++.|.+|+.|++ .
T Consensus 154 ~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~-------~c~--ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t 224 (406)
T KOG0295|consen 154 FDISFDASGKYLATCSSDLSAKLWDFDTFF-------RCI--KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT 224 (406)
T ss_pred eEEEEecCccEEEecCCccchhheeHHHHH-------HHH--HHhcCcccceeeEEEEecCCeeeecccccceeEEeccc
Confidence 999999999999999999999999998741 222 5788999999999997 699999999999999999 8
Q ss_pred CceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCc-CCCcccCCccccccCCCcceEEeecCCcccceecc
Q 003423 337 GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLT 415 (821)
Q Consensus 337 ~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (821)
|.++.++.+|.. -|..++.+.||.++++++.|.++++|-+.+. +...+.
T Consensus 225 g~cv~t~~~h~e-wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR----------------------------- 274 (406)
T KOG0295|consen 225 GYCVKTFPGHSE-WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR----------------------------- 274 (406)
T ss_pred ceeEEeccCchH-hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh-----------------------------
Confidence 999999999998 5999999999999999999999999998542 233332
Q ss_pred CCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCcc
Q 003423 416 DSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGN 495 (821)
Q Consensus 416 ~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~ 495 (821)
.|+-+|.+++|.|+..+ .+ +. -+.++.
T Consensus 275 -~hEh~vEci~wap~~~~---~~--------i~--------------------------------------~at~~~--- 301 (406)
T KOG0295|consen 275 -EHEHPVECIAWAPESSY---PS--------IS--------------------------------------EATGST--- 301 (406)
T ss_pred -ccccceEEEEecccccC---cc--------hh--------------------------------------hccCCC---
Confidence 33456888888875320 00 00 001110
Q ss_pred EEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEE
Q 003423 496 MTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEF 575 (821)
Q Consensus 496 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 575 (821)
..+.++++++.|++|++||+..+ .|+-++
T Consensus 302 -------------------------------------~~~~~l~s~SrDktIk~wdv~tg--------------~cL~tL 330 (406)
T KOG0295|consen 302 -------------------------------------NGGQVLGSGSRDKTIKIWDVSTG--------------MCLFTL 330 (406)
T ss_pred -------------------------------------CCccEEEeecccceEEEEeccCC--------------eEEEEE
Confidence 01378899999999999999988 777776
Q ss_pred ecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccCCcceEEEEEEecCCCceEE
Q 003423 576 SSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEI 655 (821)
Q Consensus 576 ~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l 655 (821)
.+|...|..++|+|.|+||+++..|+++++||+.. ...+.++. +| ..-|+++.|. .+..++
T Consensus 331 -~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~-------------~~cmk~~~-ah-~hfvt~lDfh---~~~p~V 391 (406)
T KOG0295|consen 331 -VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN-------------LQCMKTLE-AH-EHFVTSLDFH---KTAPYV 391 (406)
T ss_pred -ecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc-------------ceeeeccC-CC-cceeEEEecC---CCCceE
Confidence 89999999999999999999999999999999984 33455554 66 5578999888 677899
Q ss_pred EEecCCCeEEEEEe
Q 003423 656 RSTGGDGCICYLEY 669 (821)
Q Consensus 656 ~t~g~Dg~i~iw~~ 669 (821)
+||+-|.++++|+.
T Consensus 392 vTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 392 VTGSVDQTVKVWEC 405 (406)
T ss_pred Eeccccceeeeeec
Confidence 99999999999974
No 42
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=3.1e-27 Score=231.73 Aligned_cols=465 Identities=13% Similarity=0.180 Sum_probs=324.5
Q ss_pred CCcceeeccce-------eeeeeEEEEEeccCCCCCCcceEEeec---CCeEEEEECCCCeeeeEEEeeccccEEeEEec
Q 003423 5 DLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (821)
Q Consensus 5 ~i~~w~~~~~~-------~~~~Vt~l~~~~~p~~~~~~~~l~~g~---~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~ 74 (821)
.+++||..+.. ....|+|++|+ +. .++.+|++-. +..+.|||.+.++.+...+.. ++.|....|+
T Consensus 135 hvriWdsv~L~TL~V~g~f~~GV~~vaFs--k~--~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~s-ne~v~~a~FH 209 (626)
T KOG2106|consen 135 HVRIWDSVTLSTLHVIGFFDRGVTCVAFS--KI--NGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTS-NEVVFLATFH 209 (626)
T ss_pred eeeecccccceeeeeeccccccceeeeec--cc--CCCceEEEecCCCccccchhhchhhhccCcceec-cceEEEEEec
Confidence 58899966554 44569999999 54 3466776643 578999999998888777753 3468889999
Q ss_pred cccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCC-CcEEEEEEeecCCCCCEEEEE
Q 003423 75 FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIG 153 (821)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~~~~~~~~~~~~~l~t~ 153 (821)
|.. ..++++.|.+.+.+|++..+.. .+....++++. .-|+|++|.+ +|+ ++||
T Consensus 210 Ptd----------~nliit~Gk~H~~Fw~~~~~~l------------~k~~~~fek~ekk~Vl~v~F~e---ngd-viTg 263 (626)
T KOG2106|consen 210 PTD----------PNLIITCGKGHLYFWTLRGGSL------------VKRQGIFEKREKKFVLCVTFLE---NGD-VITG 263 (626)
T ss_pred cCC----------CcEEEEeCCceEEEEEccCCce------------EEEeeccccccceEEEEEEEcC---CCC-EEee
Confidence 773 4699999999999998875431 12233344433 5799999998 776 6889
Q ss_pred ECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCC
Q 003423 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (821)
Q Consensus 154 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 233 (821)
..+|.|.||+..+.+..++...|.. -++++... .++ .|++|+.|..|..||-.
T Consensus 264 DS~G~i~Iw~~~~~~~~k~~~aH~g-gv~~L~~l---r~G-tllSGgKDRki~~Wd~~---------------------- 316 (626)
T KOG2106|consen 264 DSGGNILIWSKGTNRISKQVHAHDG-GVFSLCML---RDG-TLLSGGKDRKIILWDDN---------------------- 316 (626)
T ss_pred cCCceEEEEeCCCceEEeEeeecCC-ceEEEEEe---cCc-cEeecCccceEEecccc----------------------
Confidence 9999999999988888877775554 46777663 344 45569999999999943
Q ss_pred cceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEE
Q 003423 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (821)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 313 (821)
.......++....+.|..++=...+ |+.|..-..|--=.+.++-. ....+|....|.
T Consensus 317 ----------y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~-----------~~v~gh~delwg 373 (626)
T KOG2106|consen 317 ----------YRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFT-----------LTVQGHGDELWG 373 (626)
T ss_pred ----------ccccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCce-----------EEEEecccceee
Confidence 0111122233455667776543322 55555555565555655543 588899999999
Q ss_pred EEEc--CCEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccc
Q 003423 314 CCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEA 391 (821)
Q Consensus 314 v~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~ 391 (821)
++.+ .++++|++.|+.+++|+ +.+.+-+..-. . +..++.|+|.| .+|.|...|...+.|.++..+-
T Consensus 374 la~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~-d-~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv-------- 441 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIE-D-PAECADFHPSG-VVAVGTATGRWFVLDTETQDLV-------- 441 (626)
T ss_pred EEcCCChhheeeccCcceEEEcc-CCceeEEEEec-C-ceeEeeccCcc-eEEEeeccceEEEEecccceeE--------
Confidence 9998 48999999999999999 55544443322 2 58899999999 9999999999999998653211
Q ss_pred cccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEE-ecCCcEEEEEecCCCcceeeEeeeccCCcceEEE
Q 003423 392 KEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICM 470 (821)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~-~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~ 470 (821)
.+. ...+++++++|+|+|.+++. +.++.++.+++..... +...+- .....+++.+
T Consensus 442 ----------~~~------------~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~-~y~r~~-k~~gs~ithL 497 (626)
T KOG2106|consen 442 ----------TIH------------TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR-KYSRVG-KCSGSPITHL 497 (626)
T ss_pred ----------EEE------------ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc-EEEEee-eecCceeEEe
Confidence 111 11467999999999977665 5567788888876543 222332 2334888888
Q ss_pred eccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeE------------EeecCCCeEE
Q 003423 471 DLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTY------------WCKSLGHRFI 538 (821)
Q Consensus 471 ~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l 538 (821)
+++.+ .+++.+-+.|-.|..| .............+.|.... -..+.. .+-+.+.+++
T Consensus 498 DwS~D--------s~~~~~~S~d~eiLyW-~~~~~~~~ts~kDvkW~t~~--c~lGF~v~g~s~~t~i~a~~rs~~~~~l 566 (626)
T KOG2106|consen 498 DWSSD--------SQFLVSNSGDYEILYW-KPSECKQITSVKDVKWATYT--CTLGFEVFGGSDGTDINAVARSHCEKLL 566 (626)
T ss_pred eecCC--------CceEEeccCceEEEEE-ccccCcccceecceeeeeeE--EEEEEEEecccCCchHHHhhhhhhhhhh
Confidence 88664 4899999999999999 33332222223333343211 001111 1223466899
Q ss_pred EEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEec
Q 003423 539 FTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPL 609 (821)
Q Consensus 539 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~ 609 (821)
++|...|+|++|..+..... ....++ .+|+..|++++|+.+...|++.+.|.+|..|++
T Consensus 567 A~gdd~g~v~lf~yPc~s~r-----------A~~he~-~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 567 ASGDDFGKVHLFSYPCSSPR-----------APSHEY-GGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hccccCceEEEEccccCCCc-----------ccceee-ccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 99999999999988765211 122333 689999999999988888888889999999986
No 43
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.3e-30 Score=270.54 Aligned_cols=209 Identities=23% Similarity=0.399 Sum_probs=173.6
Q ss_pred ceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEE
Q 003423 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII 322 (821)
Q Consensus 245 ~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~ 322 (821)
......++.||.++|.+..|+|+.++|++||.|+++|+|.+.+... + ....||..+||++.|+ +-+++
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~-----~-----V~y~GH~~PVwdV~F~P~GyYFa 509 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC-----L-----VIYKGHLAPVWDVQFAPRGYYFA 509 (707)
T ss_pred CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeeccccee-----E-----EEecCCCcceeeEEecCCceEEE
Confidence 3344556889999999999999999999999999999999999765 3 5778999999999999 57999
Q ss_pred EEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceE
Q 003423 323 TAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIF 401 (821)
Q Consensus 323 s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (821)
|++.|++.++|.. ..++++.+.+|.+ -|.|+.|+|+..+++||+.|.++++||..+.
T Consensus 510 tas~D~tArLWs~d~~~PlRifaghls-DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G--------------------- 567 (707)
T KOG0263|consen 510 TASHDQTARLWSTDHNKPLRIFAGHLS-DVDCVSFHPNSNYVATGSSDRTVRLWDVSTG--------------------- 567 (707)
T ss_pred ecCCCceeeeeecccCCchhhhccccc-ccceEEECCcccccccCCCCceEEEEEcCCC---------------------
Confidence 9999999999999 6788999999999 5999999999999999999999999998431
Q ss_pred EeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCC
Q 003423 402 SIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPC 481 (821)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~ 481 (821)
.. ++++ .+ +..++.+
T Consensus 568 ------------------~~-----------------------VRiF-----------~G-H~~~V~a------------ 582 (707)
T KOG0263|consen 568 ------------------NS-----------------------VRIF-----------TG-HKGPVTA------------ 582 (707)
T ss_pred ------------------cE-----------------------EEEe-----------cC-CCCceEE------------
Confidence 00 0111 01 0111111
Q ss_pred CCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccc
Q 003423 482 GIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCY 561 (821)
Q Consensus 482 ~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 561 (821)
.+++|+|++|++|+.||.|++||+..+
T Consensus 583 -----------------------------------------------l~~Sp~Gr~LaSg~ed~~I~iWDl~~~------ 609 (707)
T KOG0263|consen 583 -----------------------------------------------LAFSPCGRYLASGDEDGLIKIWDLANG------ 609 (707)
T ss_pred -----------------------------------------------EEEcCCCceEeecccCCcEEEEEcCCC------
Confidence 134456789999999999999999987
Q ss_pred cCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcc
Q 003423 562 ESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (821)
Q Consensus 562 ~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~ 612 (821)
.++..+ .+|.+.|.++.||.+|..||+|+.|.+|++||+.+.
T Consensus 610 --------~~v~~l-~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 610 --------SLVKQL-KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred --------cchhhh-hcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 555555 788999999999999999999999999999998753
No 44
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=3.8e-31 Score=247.01 Aligned_cols=268 Identities=20% Similarity=0.329 Sum_probs=214.8
Q ss_pred EEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce
Q 003423 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (821)
Q Consensus 90 ~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~ 169 (821)
++....|++|+|||.+. ......+.||++.|.|+.| +.+.+++|+.|.+|++||+++++.
T Consensus 210 iVSGlrDnTikiWD~n~---------------~~c~~~L~GHtGSVLCLqy-----d~rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 210 IVSGLRDNTIKIWDKNS---------------LECLKILTGHTGSVLCLQY-----DERVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred hhcccccCceEEecccc---------------HHHHHhhhcCCCcEEeeec-----cceEEEecCCCceEEEEeccCCch
Confidence 55556699999999874 4677889999999999998 446999999999999999999999
Q ss_pred eEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeE
Q 003423 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (821)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (821)
+.++..|... +..+.| ...++++++.|..|.|||+.. .......
T Consensus 270 l~tlihHcea-VLhlrf-----~ng~mvtcSkDrsiaVWdm~s------------------------------ps~it~r 313 (499)
T KOG0281|consen 270 LNTLIHHCEA-VLHLRF-----SNGYMVTCSKDRSIAVWDMAS------------------------------PTDITLR 313 (499)
T ss_pred hhHHhhhcce-eEEEEE-----eCCEEEEecCCceeEEEeccC------------------------------chHHHHH
Confidence 9888777665 345555 467999999999999999981 1123445
Q ss_pred EEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCe
Q 003423 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCT 329 (821)
Q Consensus 250 ~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~ 329 (821)
..+.||...|+.+.|+ .++++|+|.|++|++|++.+.+. + .++.+|+..|-|+.+.+.++++|+.|.+
T Consensus 314 rVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~ef-----v-----Rtl~gHkRGIAClQYr~rlvVSGSSDnt 381 (499)
T KOG0281|consen 314 RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEF-----V-----RTLNGHKRGIACLQYRDRLVVSGSSDNT 381 (499)
T ss_pred HHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceee-----e-----hhhhcccccceehhccCeEEEecCCCce
Confidence 5677999999999995 56999999999999999999776 4 5899999999999999999999999999
Q ss_pred EEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCc
Q 003423 330 CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNF 408 (821)
Q Consensus 330 i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (821)
|++||+ .|.+++.+.+|.. -|.++.|+ .+.+++|+.||+|++||+....-. +.+..
T Consensus 382 IRlwdi~~G~cLRvLeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldp--------------------ra~~~ 438 (499)
T KOG0281|consen 382 IRLWDIECGACLRVLEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDP--------------------RAPAS 438 (499)
T ss_pred EEEEeccccHHHHHHhchHH-hhhheeec--CceeeeccccceEEEEecccccCC--------------------ccccc
Confidence 999999 7999999999998 69999996 578999999999999999542110 11112
Q ss_pred ccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecC
Q 003423 409 SEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD 449 (821)
Q Consensus 409 ~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~ 449 (821)
...+.....|++.|-.+.|. +-++++++.+..+..|++.+
T Consensus 439 ~~Cl~~lv~hsgRVFrLQFD-~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 439 TLCLRTLVEHSGRVFRLQFD-EFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred chHHHhhhhccceeEEEeec-ceEEEeccCCCeEEEEEcCC
Confidence 22233344566778888886 33556666666677655544
No 45
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=4.4e-29 Score=235.61 Aligned_cols=294 Identities=15% Similarity=0.157 Sum_probs=242.3
Q ss_pred CCCCCCcceeeccce-------eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEE
Q 003423 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (821)
Q Consensus 1 ~~~~~i~~w~~~~~~-------~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~ 72 (821)
++|...-+|+..+++ |...|+++.|+ .| +.|||+|. +|.|+||+..+|.....+.. +...|.=+.
T Consensus 83 GgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs--hd----gtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~dieWl~ 155 (399)
T KOG0296|consen 83 GGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS--HD----GTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVEDIEWLK 155 (399)
T ss_pred CCCceEEEEEccCCcceeEecCCCCceEEEEEc--cC----ceEEEecCCCccEEEEEcccCceEEEeec-ccCceEEEE
Confidence 467888999999997 78889999999 77 78999988 99999999999998877762 233455566
Q ss_pred eccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEE
Q 003423 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (821)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t 152 (821)
|+|.. ..+++...||.+-+|++..+ ...+.+.||+.++++-.|.| +|+.+++
T Consensus 156 WHp~a----------~illAG~~DGsvWmw~ip~~---------------~~~kv~~Gh~~~ct~G~f~p---dGKr~~t 207 (399)
T KOG0296|consen 156 WHPRA----------HILLAGSTDGSVWMWQIPSQ---------------ALCKVMSGHNSPCTCGEFIP---DGKRILT 207 (399)
T ss_pred ecccc----------cEEEeecCCCcEEEEECCCc---------------ceeeEecCCCCCcccccccC---CCceEEE
Confidence 77653 24555666899999999853 35678899999999999999 9999999
Q ss_pred EECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCC
Q 003423 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (821)
Q Consensus 153 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 232 (821)
+..||+|++||..+++.+..+...+......+.+ +..+..+..|+.++.+++-+..
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~---~~~~~~~~~g~~e~~~~~~~~~--------------------- 263 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISL---NLAGSTLTKGNSEGVACGVNNG--------------------- 263 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccCcCCcccc---ccccceeEeccCCccEEEEccc---------------------
Confidence 9999999999999999988887554333333333 4677888999999988887765
Q ss_pred CcceeeecccccceeeEEEEe--------cCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEecccCcccCCCCceeeec
Q 003423 233 DFKCFKLQDQQHTAVNLFRLV--------GHEGSIFRIEWSS---CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (821)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~--------~h~~~I~~l~~s~---~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~ 301 (821)
+++.+.... +|+..+.+|.+.| .-.+.|+|+-||+|.|||+.....
T Consensus 264 ------------sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~----------- 320 (399)
T KOG0296|consen 264 ------------SGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL----------- 320 (399)
T ss_pred ------------cceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh-----------
Confidence 233333332 5666666666665 445789999999999999998766
Q ss_pred eEEeccceeEEEEEEcC-CEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 302 SVLYGHNARVWDCCLTD-SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 302 ~~~~~h~~~i~~v~~~~-~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
+....|...|..+.|.+ .+|++++.+|.|+.||. .|+++.++.+|+. +|..++++|+.++++|++.|++.++|+.
T Consensus 321 R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 321 RHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQM-GILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred heeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCch-heeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 57888999999999996 89999999999999999 8999999999999 7999999999999999999999999976
No 46
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=9.6e-26 Score=234.68 Aligned_cols=573 Identities=13% Similarity=0.142 Sum_probs=382.2
Q ss_pred CCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCC
Q 003423 33 SSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNS 112 (821)
Q Consensus 33 ~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~ 112 (821)
++.-++.++.|....+||.+.-.++..-+. ...+|++++-..+ .+.++.++.|.+|....
T Consensus 45 ~~~~~vtt~vgksfqvYd~~kl~ll~vs~~-lp~~I~alas~~~-------------~vy~A~g~~i~~~~rgk------ 104 (910)
T KOG1539|consen 45 GSTFYVTTCVGKSFQVYDVNKLNLLFVSKP-LPDKITALASDKD-------------YVYVASGNKIYAYARGK------ 104 (910)
T ss_pred CceEEEEEecCceEEEEeccceEEEEecCC-CCCceEEEEecCc-------------eEEEecCcEEEEEEccc------
Confidence 345566677799999999988777655433 3347999886632 55555667788877541
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC-cee---EEEccCcceeEEEEeecc
Q 003423 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SII---LEVHSPERCLLYSMKLWG 188 (821)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~-~~~---~~~~~~~~~~~~s~~~~~ 188 (821)
...+...+|...|.-+. | =|..++++..++.+.||+.... ..+ ..+.......+.++ +++
T Consensus 105 ----------~i~~~~~~~~a~v~~l~--~---fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP 168 (910)
T KOG1539|consen 105 ----------HIRHTTLLHGAKVHLLL--P---FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHP 168 (910)
T ss_pred ----------eEEEEeccccceEEEEe--e---ecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecc
Confidence 34556677776666665 4 5678898999999999999874 211 01111111113232 222
Q ss_pred CCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCC
Q 003423 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (821)
Q Consensus 189 ~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 268 (821)
. ---+.|+.|+..|.+++|+++ +.+.++++.++...|+++.-+|--
T Consensus 169 ~-TYLNKIvvGs~~G~lql~Nvr---------------------------------t~K~v~~f~~~~s~IT~ieqsPaL 214 (910)
T KOG1539|consen 169 S-TYLNKIVVGSSQGRLQLWNVR---------------------------------TGKVVYTFQEFFSRITAIEQSPAL 214 (910)
T ss_pred h-hheeeEEEeecCCcEEEEEec---------------------------------cCcEEEEecccccceeEeccCCcc
Confidence 1 224578899999999999999 889999999999999999999988
Q ss_pred CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcCCCceee-E-e
Q 003423 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLK-M-I 343 (821)
Q Consensus 269 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~~~~~~~-~-~ 343 (821)
..+|.|..+|+|.+++++.++. + ..+....++|+++.|. +..+++++..|.+.+||++++.+. . .
T Consensus 215 DVVaiG~~~G~ViifNlK~dki-----l-----~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~ 284 (910)
T KOG1539|consen 215 DVVAIGLENGTVIIFNLKFDKI-----L-----MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR 284 (910)
T ss_pred eEEEEeccCceEEEEEcccCcE-----E-----EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee
Confidence 8999999999999999999866 2 2333335999999998 367888888899999999655443 3 3
Q ss_pred ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceE
Q 003423 344 KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVR 423 (821)
Q Consensus 344 ~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 423 (821)
..|.+ .|....|.|....+++++.|.++++|=.+.. ...+..++...+|..+..
T Consensus 285 nah~~-sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~-------------------------dg~pR~LR~R~GHs~Pp~ 338 (910)
T KOG1539|consen 285 NAHYG-SVTGATFLPGEPVLVTAGADNSLKVWVFDSG-------------------------DGVPRLLRSRGGHSAPPS 338 (910)
T ss_pred ccccC-CcccceecCCCceEeeccCCCceeEEEeeCC-------------------------CCcchheeeccCCCCCch
Confidence 46767 6999999999999999999999999976421 011223344467788899
Q ss_pred EEEee-cCCeEEEEecCCc-EEEEEecCC-CcceeeE---------e--e--eccCCcceEEEeccCCCCCCCCCCCcEE
Q 003423 424 CLHLT-SEDTLYIATNHGY-LYHTKLCDM-DSVNWNK---------I--L--QVSEGMPIICMDLLSNEPKYPCGIDDWV 487 (821)
Q Consensus 424 ~l~f~-~~~~~l~~~~~g~-~~~~~i~~~-~~~~~~~---------~--~--~~~~~~~i~~~~~~~~~~~~s~~~~~~l 487 (821)
++.|. .++.++......+ +..+.+... .+....+ + . ..-.-.++..+++..... ....+.+
T Consensus 339 ~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE---~~W~Nv~ 415 (910)
T KOG1539|consen 339 CIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENARE---KEWDNVI 415 (910)
T ss_pred heeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchh---hhhccee
Confidence 99998 5666666554333 332222111 0000001 0 0 000122344443322110 0123556
Q ss_pred EEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccc
Q 003423 488 ALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTN 567 (821)
Q Consensus 488 ~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 567 (821)
+.--.+..++.|++.+...- ...+...+-..........|.+..|++.+.|.+.|.|.+|++..+.
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G---~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi----------- 481 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSG---RHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI----------- 481 (910)
T ss_pred EEecCcceEEEEeccCcccc---cEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe-----------
Confidence 66666778899998765431 1122111111233444556788899999999999999999999883
Q ss_pred eeeeeEEE--ecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccCCcceEEEEE
Q 003423 568 NVFLVAEF--SSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSV 645 (821)
Q Consensus 568 ~~~~~~~~--~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~ 645 (821)
..+.| ...|..+|+.++...-++.+++++.+|-+.+|++.+. .++..++-.+ .++++..
T Consensus 482 ---~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k-------------~l~~~l~l~~---~~~~iv~ 542 (910)
T KOG1539|consen 482 ---HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK-------------VLKKSLRLGS---SITGIVY 542 (910)
T ss_pred ---eecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCc-------------ceeeeeccCC---Ccceeee
Confidence 33334 3589999999999988999999999999999999842 1333333233 6777777
Q ss_pred EecCCCceEEEEecCCCeEEEEEeecCCceeeeeeeeeeeeeeeeeeeccCCCccCCCCCeEEEeeecccEEEEECcccc
Q 003423 646 AKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEA 725 (821)
Q Consensus 646 ~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~vW~~~~~~ 725 (821)
+ .....++.+..|-.|+++|+.....-.+|.|+. +- +..+.+.++++.|++...|+.+++||+-|..
T Consensus 543 h---r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~-----nr-----itd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 543 H---RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHG-----NR-----ITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred e---ehhhhhhhhcCceeEEEEEchhhhhhHHhhccc-----cc-----eeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 6 445678899999999999996543444555542 11 1122345567789999999999999999999
Q ss_pred EEEEEeeCCCCccceeecCCCCCcceeEEEEeec--eEEEEc
Q 003423 726 KVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKAN--QLWRLR 765 (821)
Q Consensus 726 ~l~~i~cgg~~r~~~~~~~~~~~~~~~~~~~~~~--~l~~~~ 765 (821)
.+-.+----.--..+|.| ++-.+|-++.+ .+++|.
T Consensus 610 lID~~~vd~~~~sls~SP-----ngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 610 LIDGLLVDSPCTSLSFSP-----NGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eeeeEecCCcceeeEECC-----CCCEEEEEEecCceEEEEE
Confidence 887664333334445543 33345555544 344444
No 47
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.4e-25 Score=228.56 Aligned_cols=502 Identities=14% Similarity=0.128 Sum_probs=330.6
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCC-eeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~-~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (821)
...+|+||||+ .+ ...||++. +|.|.||++..+ -+...+.+++...|.+++|.+.+ +++.+
T Consensus 24 ~Ps~I~slA~s--~k----S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-----------RLFS~ 86 (691)
T KOG2048|consen 24 KPSEIVSLAYS--HK----SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-----------RLFSS 86 (691)
T ss_pred eccceEEEEEe--cc----CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-----------eEEee
Confidence 35789999999 65 34566665 899999999875 44556677777889999999442 68888
Q ss_pred EcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEE
Q 003423 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (821)
Q Consensus 94 ~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 173 (821)
..++.|.-||+.. ++....+....+.|++++.+| .+..++.|+.||.+...+...++.....
T Consensus 87 g~sg~i~EwDl~~---------------lk~~~~~d~~gg~IWsiai~p---~~~~l~IgcddGvl~~~s~~p~~I~~~r 148 (691)
T KOG2048|consen 87 GLSGSITEWDLHT---------------LKQKYNIDSNGGAIWSIAINP---ENTILAIGCDDGVLYDFSIGPDKITYKR 148 (691)
T ss_pred cCCceEEEEeccc---------------CceeEEecCCCcceeEEEeCC---ccceEEeecCCceEEEEecCCceEEEEe
Confidence 8899999999985 456777778889999999999 8899999999998888888877765443
Q ss_pred c-cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEE--
Q 003423 174 H-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF-- 250 (821)
Q Consensus 174 ~-~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 250 (821)
. ...++.+.++.+ ++++..|++|+.||.|++||.. .+..++
T Consensus 149 ~l~rq~sRvLslsw---~~~~~~i~~Gs~Dg~Iriwd~~---------------------------------~~~t~~~~ 192 (691)
T KOG2048|consen 149 SLMRQKSRVLSLSW---NPTGTKIAGGSIDGVIRIWDVK---------------------------------SGQTLHII 192 (691)
T ss_pred ecccccceEEEEEe---cCCccEEEecccCceEEEEEcC---------------------------------CCceEEEe
Confidence 2 344566788887 6889999999999999999998 222222
Q ss_pred -----EEe-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEE
Q 003423 251 -----RLV-GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII 322 (821)
Q Consensus 251 -----~~~-~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~ 322 (821)
.+. +-.--|+++.|..++ .|++|..-|+|.+||...+.. . .....|.+.|.+++.. .++++
T Consensus 193 ~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTL-----i-----qS~~~h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 193 TMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTL-----I-----QSHSCHDADVLALAVADNEDRVF 261 (691)
T ss_pred eecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcch-----h-----hhhhhhhcceeEEEEcCCCCeEE
Confidence 111 233458889888664 799999999999999998876 4 4677799999999998 48999
Q ss_pred EEeCCCeEEEEcCCCc-----eeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCC
Q 003423 323 TAGEDCTCRVWGSDGK-----QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGR 397 (821)
Q Consensus 323 s~~~dg~i~iwd~~~~-----~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 397 (821)
++|.|+.+..+...+. .......|.. .|.+++..++ .+++||.|..+.+-..+.. .+..|..
T Consensus 262 saGvd~~ii~~~~~~~~~~wv~~~~r~~h~h-dvrs~av~~~--~l~sgG~d~~l~i~~s~~~---~~~~h~~------- 328 (691)
T KOG2048|consen 262 SAGVDPKIIQYSLTTNKSEWVINSRRDLHAH-DVRSMAVIEN--ALISGGRDFTLAICSSREF---KNMDHRQ------- 328 (691)
T ss_pred EccCCCceEEEEecCCccceeeeccccCCcc-cceeeeeecc--eEEecceeeEEEEcccccc---Cchhhhc-------
Confidence 9999999999988433 2222334555 5999999876 8999999998887655321 0111100
Q ss_pred cceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCC------CcceeeEeeeccCCcceEEEe
Q 003423 398 TEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDM------DSVNWNKILQVSEGMPIICMD 471 (821)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~------~~~~~~~~~~~~~~~~i~~~~ 471 (821)
++ ...+ =..+...+...+++.-....+..+++... ......++ ...+...+.|.+
T Consensus 329 --------~~-------~~p~---~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl-~~k~~~nIs~~a 389 (691)
T KOG2048|consen 329 --------KN-------LFPA---SDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKL-FTKEKENISCAA 389 (691)
T ss_pred --------cc-------cccc---cceeecCccceEEEEeccccccceeccCcccccccChhhheee-ecCCccceeeec
Confidence 00 0000 01122233444444443333333333322 01111111 123345566666
Q ss_pred ccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEEC-CCCcEEEe
Q 003423 472 LLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTAD-PKGRLKLW 550 (821)
Q Consensus 472 ~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iw 550 (821)
++ |++++++.+.-. ..++|.++.... ..+..+.-.+ ..........++-++..++.++ ....+.++
T Consensus 390 iS--------Pdg~~Ia~st~~-~~~iy~L~~~~~--vk~~~v~~~~--~~~~~a~~i~ftid~~k~~~~s~~~~~le~~ 456 (691)
T KOG2048|consen 390 IS--------PDGNLIAISTVS-RTKIYRLQPDPN--VKVINVDDVP--LALLDASAISFTIDKNKLFLVSKNIFSLEEF 456 (691)
T ss_pred cC--------CCCCEEEEeecc-ceEEEEeccCcc--eeEEEeccch--hhhccceeeEEEecCceEEEEecccceeEEE
Confidence 64 466999998865 678888875321 1111111111 1111111222333444444444 66677777
Q ss_pred eecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcccc
Q 003423 551 QLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNY 630 (821)
Q Consensus 551 d~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 630 (821)
++...... ++...-.+.....|+.+..|++|+|||..+.+|.|.+|+++.. ....+..
T Consensus 457 el~~ps~k-----------el~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~-----------~~~~l~~ 514 (691)
T KOG2048|consen 457 ELETPSFK-----------ELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETL-----------ESHLLKV 514 (691)
T ss_pred EecCcchh-----------hhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccc-----------eeecchh
Confidence 77665211 1111111234667999999999999999999999999999853 2222221
Q ss_pred cccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEeecC
Q 003423 631 FKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (821)
Q Consensus 631 ~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~ 672 (821)
. -+-.||...+.| .+...|+-...|+.+.-|+++..
T Consensus 515 r----ln~~vTa~~~~~--~~~~~lvvats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 515 R----LNIDVTAAAFSP--FVRNRLVVATSNNQVFEFDIEAR 550 (691)
T ss_pred c----cCcceeeeeccc--cccCcEEEEecCCeEEEEecchh
Confidence 1 124689988887 44456777777899999998543
No 48
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=2.2e-28 Score=224.97 Aligned_cols=204 Identities=17% Similarity=0.294 Sum_probs=175.7
Q ss_pred ceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccC-CceeEEEccCcceeEEEEeeccCCccCeEEEEEee
Q 003423 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (821)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (821)
.++..+.+|.+.|+.+.|+| +|.+||+|+.|..|.+|++.. -+....+++|... +..+.+ ..|+..|++++.
T Consensus 38 ap~m~l~gh~geI~~~~F~P---~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgA-VM~l~~---~~d~s~i~S~gt 110 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHP---DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGA-VMELHG---MRDGSHILSCGT 110 (338)
T ss_pred chhhhcCCCcceEEEEEECC---CCCeEeecCCcceEEEEeccccccceeeeccccce-eEeeee---ccCCCEEEEecC
Confidence 45667889999999999999 999999999999999999654 3445556666554 455555 578999999999
Q ss_pred CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCC-CEEEEEeCCCeE
Q 003423 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSA 280 (821)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~~l~s~s~Dg~i 280 (821)
|..++.||.+ +++.++.+++|.+.|+.+.-+.-| .++.|+++||++
T Consensus 111 Dk~v~~wD~~---------------------------------tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~ 157 (338)
T KOG0265|consen 111 DKTVRGWDAE---------------------------------TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTL 157 (338)
T ss_pred CceEEEEecc---------------------------------cceeeehhccccceeeecCccccCCeEEEecCCCceE
Confidence 9999999999 888999999999999999855444 467899999999
Q ss_pred EEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEe
Q 003423 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYD 357 (821)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~ 357 (821)
|+||++.... ......+-.++++.|. ...+++|+-|+.|++||+ .+....++.+|.. +|+.+..+
T Consensus 158 kl~D~R~k~~-----------~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls 225 (338)
T KOG0265|consen 158 KLWDIRKKEA-----------IKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD-TITGLSLS 225 (338)
T ss_pred EEEeecccch-----------hhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccC-ceeeEEec
Confidence 9999998765 3444456678999998 589999999999999999 7788999999999 79999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcC
Q 003423 358 SLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 358 ~~~~~l~tg~~dg~I~iwd~~ 378 (821)
++|.++.+-+.|.++++||++
T Consensus 226 ~~gs~llsnsMd~tvrvwd~r 246 (338)
T KOG0265|consen 226 RYGSFLLSNSMDNTVRVWDVR 246 (338)
T ss_pred cCCCccccccccceEEEEEec
Confidence 999999999999999999984
No 49
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.2e-26 Score=236.38 Aligned_cols=560 Identities=12% Similarity=0.110 Sum_probs=337.2
Q ss_pred EEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc---CCe
Q 003423 22 ALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKR 98 (821)
Q Consensus 22 ~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g---~~~ 98 (821)
+|+.. |. ..+++--.+..|.+||.+..+.-+-+.. ++.++.+++|++++ ++++++. ...
T Consensus 42 gLa~~--p~----Sgl~aYpAGCvVVlfn~~~~tQ~hlvns-sRk~~t~vAfS~~G-----------ryvatGEcG~~pa 103 (1080)
T KOG1408|consen 42 GLASV--PC----SGLCAYPAGCVVVLFNVDSCTQSHLVNS-SRKPLTCVAFSQNG-----------RYVATGECGRTPA 103 (1080)
T ss_pred ccccc--cc----ccceeeccCcEEEEEcccccchhheecc-cCcceeEEEEcCCC-----------cEEEecccCCCcc
Confidence 45555 65 3466666678999999988776555554 44489999999775 4566554 257
Q ss_pred EEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC--CCcEEEEEccCCceeEEEccC
Q 003423 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSSIILEVHSP 176 (821)
Q Consensus 99 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~--d~~i~iwd~~~~~~~~~~~~~ 176 (821)
+++|++.... .+..+..|+-.|+|++|+| .++++++.+. |-.|.+||......... ..
T Consensus 104 ~kVw~la~h~---------------vVAEfvdHKY~vtcvaFsp---~~kyvvSVGsQHDMIVnv~dWr~N~~~as--nk 163 (1080)
T KOG1408|consen 104 SKVWSLAFHG---------------VVAEFVDHKYNVTCVAFSP---GNKYVVSVGSQHDMIVNVNDWRVNSSGAS--NK 163 (1080)
T ss_pred ceeeeecccc---------------chhhhhhccccceeeeecC---CCcEEEeeccccceEEEhhhhhhcccccc--cc
Confidence 9999998653 4667889999999999999 9999986554 45678888765432221 11
Q ss_pred cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCc--ccC--CCCCCCc----------ccCCCCCC-cceeeecc
Q 003423 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHV--APL--LNSPEGN----------HAHGSSSD-FKCFKLQD 241 (821)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~--~~~--~~~~~~~----------~~~~~~~~-~~~~~~~~ 241 (821)
....+..++| +.|+.++++.+. ..|++|.++.... .|. .+...+. ..++...- -.++.+..
T Consensus 164 iss~Vsav~f---sEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~ 239 (1080)
T KOG1408|consen 164 ISSVVSAVAF---SEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA 239 (1080)
T ss_pred cceeEEEEEE---ccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec
Confidence 2223444445 689999998864 7899999884331 111 0000000 00000000 00111100
Q ss_pred cccceeeEEEEe----------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCC--------Cc-eeeece
Q 003423 242 QQHTAVNLFRLV----------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD--------SI-EEVGSS 302 (821)
Q Consensus 242 ~~~~~~~~~~~~----------~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~--------~~-~~~~~~ 302 (821)
.-.+.+|. -.+..-+||+.+ .++++.|+.+|.||+++..+-...... +. ....+.
T Consensus 240 ----qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~ 313 (1080)
T KOG1408|consen 240 ----QGHLVEFSSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPE 313 (1080)
T ss_pred ----ccceeeechhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhccccc
Confidence 00011110 012234566664 569999999999999998764431000 00 000000
Q ss_pred -EEeccc----eeEEEEEEc--CCEEEEEeCCCeEEEEcC-CC---ceeeEeecccCCCeEEEEEecC-----------C
Q 003423 303 -VLYGHN----ARVWDCCLT--DSFIITAGEDCTCRVWGS-DG---KQLKMIKEHIGRGIWRCLYDSL-----------S 360 (821)
Q Consensus 303 -~~~~h~----~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~---~~~~~~~~h~~~~i~~l~~~~~-----------~ 360 (821)
...+.. -...++.|. ...|.....|..+.+||+ +- .....+..|.. .||.+..-|- .
T Consensus 314 ~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~-ciW~Ve~~p~nv~~~~~aclp~ 392 (1080)
T KOG1408|consen 314 PKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSA-CIWDVENLPCNVHSPTAACLPR 392 (1080)
T ss_pred ccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccc-eeeeeccccccccCcccccCCc
Confidence 000000 012355666 478888899999999999 32 12344556777 6998876541 2
Q ss_pred CEEEEEeCCCcEEEEEcCCc-CCCcccCCc-----cccccC-CCcceE-EeecCCcccceeccCCCCcceEEEEeecCCe
Q 003423 361 SLLVTAGFDSAIKVHQFQAF-LPGSLESHP-----EAKEFN-GRTEIF-SIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT 432 (821)
Q Consensus 361 ~~l~tg~~dg~I~iwd~~~~-~~~~~~~~~-----~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~ 432 (821)
..++|++.|++|++|++..- .-+.+.... ..+... ....++ +...+-........-.....+++++.+|+++
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence 35899999999999999651 011111110 001010 000110 0001111111111112234699999999999
Q ss_pred EEEEecC-CcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCC-----
Q 003423 433 LYIATNH-GYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVH----- 506 (821)
Q Consensus 433 ~l~~~~~-g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~----- 506 (821)
.|++... |.+. +++...... ...-..++..|.|+.+.... -..++||+++.|..|.+||+..+-.
T Consensus 473 hLAsGDr~Gnlr---Vy~Lq~l~~-~~~~eAHesEilcLeyS~p~-----~~~kLLASasrdRlIHV~Dv~rny~l~qtl 543 (1080)
T KOG1408|consen 473 HLASGDRGGNLR---VYDLQELEY-TCFMEAHESEILCLEYSFPV-----LTNKLLASASRDRLIHVYDVKRNYDLVQTL 543 (1080)
T ss_pred eecccCccCceE---EEEehhhhh-hhheecccceeEEEeecCch-----hhhHhhhhccCCceEEEEecccccchhhhh
Confidence 9988764 3454 444333321 22234567889998875532 2347899999999999999754211
Q ss_pred --CCcceeEEeeccCccce----------------------------------eeeeEEeecCCCeEEEEECCCCcEEEe
Q 003423 507 --TPQLSFTFTWSAGIERQ----------------------------------LLGTYWCKSLGHRFIFTADPKGRLKLW 550 (821)
Q Consensus 507 --~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~l~~~~~dg~i~iw 550 (821)
+...+..+.|....... -.---+...|..+++++++.|..|+||
T Consensus 544 d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif 623 (1080)
T KOG1408|consen 544 DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIF 623 (1080)
T ss_pred cccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEE
Confidence 22233333332211000 000012344778999999999999999
Q ss_pred eecCCCCcccccCCccceeeeeEEEe--cccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcc
Q 003423 551 QLCDPFSSVCYESSKTNNVFLVAEFS--SCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPL 628 (821)
Q Consensus 551 d~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~ 628 (821)
++..+ +..+.|+ +.|.+....+...|.|-|||+...|.++.++|+.. .+.+
T Consensus 624 ~i~sg--------------Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s-------------gEcv 676 (1080)
T KOG1408|consen 624 DIESG--------------KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS-------------GECV 676 (1080)
T ss_pred ecccc--------------ceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc-------------chhh
Confidence 99998 4444452 46667777888899999999999999999999883 3445
Q ss_pred cccccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEeec
Q 003423 629 NYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDK 671 (821)
Q Consensus 629 ~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~ 671 (821)
.... .| .+.||.+.|. ++-..|++.+.||||.+|.+..
T Consensus 677 A~m~-GH-sE~VTG~kF~---nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 677 AQMT-GH-SEAVTGVKFL---NDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhc-Cc-chheeeeeec---ccchhheeecCCceEEEEECch
Confidence 5543 66 6799999999 6778999999999999999964
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=3.6e-28 Score=223.59 Aligned_cols=281 Identities=20% Similarity=0.315 Sum_probs=229.8
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECC-CCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE-AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~-t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (821)
|.+.|..++|+ |+ +.++++|. |..|.+|++. ..+-...++.|++ .|.++.+.++. ..++.+
T Consensus 46 h~geI~~~~F~--P~----gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsg-AVM~l~~~~d~----------s~i~S~ 108 (338)
T KOG0265|consen 46 HKGEIYTIKFH--PD----GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSG-AVMELHGMRDG----------SHILSC 108 (338)
T ss_pred CcceEEEEEEC--CC----CCeEeecCCcceEEEEeccccccceeeeccccc-eeEeeeeccCC----------CEEEEe
Confidence 88999999999 99 67777765 9999999964 4455667777666 79999999653 357777
Q ss_pred EcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEE
Q 003423 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (821)
Q Consensus 94 ~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 173 (821)
+.|++++.||.+++ +..+.+++|.+-|.++..+. -...++.+|+.|+++++||+++...++.+
T Consensus 109 gtDk~v~~wD~~tG---------------~~~rk~k~h~~~vNs~~p~r--rg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 109 GTDKTVRGWDAETG---------------KRIRKHKGHTSFVNSLDPSR--RGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred cCCceEEEEecccc---------------eeeehhccccceeeecCccc--cCCeEEEecCCCceEEEEeecccchhhcc
Confidence 77999999999865 57888999999999998443 23457788999999999999988887776
Q ss_pred ccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe
Q 003423 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (821)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (821)
...- .+.++.| ..++..+.+|+.|+.|++||++ .....+.+.
T Consensus 172 ~~ky--qltAv~f---~d~s~qv~sggIdn~ikvWd~r---------------------------------~~d~~~~ls 213 (338)
T KOG0265|consen 172 ENKY--QLTAVGF---KDTSDQVISGGIDNDIKVWDLR---------------------------------KNDGLYTLS 213 (338)
T ss_pred ccce--eEEEEEe---cccccceeeccccCceeeeccc---------------------------------cCcceEEee
Confidence 4433 3455555 4677889999999999999998 667889999
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEecccee----EEEEEEc--CCEEEEEeCC
Q 003423 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR----VWDCCLT--DSFIITAGED 327 (821)
Q Consensus 254 ~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~----i~~v~~~--~~~l~s~~~d 327 (821)
||.+.|+++..+|+|.++.+-+.|.++++||++..... .+++ ..+.+|... ...+.|+ ...+-.++.|
T Consensus 214 Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~----~R~v--~if~g~~hnfeknlL~cswsp~~~~i~ags~d 287 (338)
T KOG0265|consen 214 GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS----QRCV--KIFQGHIHNFEKNLLKCSWSPNGTKITAGSAD 287 (338)
T ss_pred cccCceeeEEeccCCCccccccccceEEEEEecccCCC----CceE--EEeecchhhhhhhcceeeccCCCCcccccccc
Confidence 99999999999999999999999999999999876441 1223 456665432 3456777 4788889999
Q ss_pred CeEEEEcCC-CceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 003423 328 CTCRVWGSD-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVH 375 (821)
Q Consensus 328 g~i~iwd~~-~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iw 375 (821)
..+.+||.. ...+..+.+|.+ .|.+++|+|...+|.+++.|.+|.+=
T Consensus 288 r~vyvwd~~~r~~lyklpGh~g-svn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 288 RFVYVWDTTSRRILYKLPGHYG-SVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred ceEEEeecccccEEEEcCCcce-eEEEeeecCCCcEEEEeccCceeEee
Confidence 999999994 588999999999 69999999999999999999998763
No 51
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.4e-28 Score=219.21 Aligned_cols=282 Identities=17% Similarity=0.269 Sum_probs=226.0
Q ss_pred EEEEEeccCCCCCCcceEEe-e------cCCeEEEEECCCCeeeeEEEeec-cccEEeEEeccccCCCCCCccceeeEEE
Q 003423 21 SALCFVHLPSHLSSLPFLLA-G------SGSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVA 92 (821)
Q Consensus 21 t~l~~~~~p~~~~~~~~l~~-g------~~~~i~iwd~~t~~~~~~~~~~~-~~~i~~i~~~~~~~~~~~~~~~~~~~l~ 92 (821)
.++.|| |= -..++++| + .+|.|.|-++..++-+..++.+. ...+.+++|++.+ + ..+++
T Consensus 12 ysvqfS--Pf--~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~-----e----~~~~~ 78 (311)
T KOG0277|consen 12 YSVQFS--PF--VENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENH-----E----NQVIA 78 (311)
T ss_pred ceeEec--cc--ccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCC-----c----ceEEE
Confidence 467888 52 11344444 2 24899999997665555555443 3468999999764 2 36888
Q ss_pred EEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEE
Q 003423 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (821)
Q Consensus 93 ~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~ 172 (821)
+.|||+++|||+.... .+++.++.|...|.++.|++. ++..+++++-|++|++|+...++.+.+
T Consensus 79 a~GDGSLrl~d~~~~s--------------~Pi~~~kEH~~EV~Svdwn~~--~r~~~ltsSWD~TiKLW~~~r~~Sv~T 142 (311)
T KOG0277|consen 79 ASGDGSLRLFDLTMPS--------------KPIHKFKEHKREVYSVDWNTV--RRRIFLTSSWDGTIKLWDPNRPNSVQT 142 (311)
T ss_pred EecCceEEEeccCCCC--------------cchhHHHhhhhheEEeccccc--cceeEEeeccCCceEeecCCCCcceEe
Confidence 8999999999966443 578999999999999999983 566788889999999999999999999
Q ss_pred EccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE
Q 003423 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (821)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (821)
+.++.. .+|.+.+.+. ..+++++++.|+.+++||++ ..++.+. +
T Consensus 143 f~gh~~-~Iy~a~~sp~--~~nlfas~Sgd~~l~lwdvr--------------------------------~~gk~~~-i 186 (311)
T KOG0277|consen 143 FNGHNS-CIYQAAFSPH--IPNLFASASGDGTLRLWDVR--------------------------------SPGKFMS-I 186 (311)
T ss_pred ecCCcc-EEEEEecCCC--CCCeEEEccCCceEEEEEec--------------------------------CCCceeE-E
Confidence 988665 4788888654 56799999999999999998 1233333 7
Q ss_pred ecCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC---CEEEEEeCCC
Q 003423 253 VGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDC 328 (821)
Q Consensus 253 ~~h~~~I~~l~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~---~~l~s~~~dg 328 (821)
..|...|.+..|+. +.+.|+||+.|+.||.||++.-+. . + ..+.+|.-.|..++|+| ..|+|++.|-
T Consensus 187 ~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-----p--l--~eL~gh~~AVRkvk~Sph~~~lLaSasYDm 257 (311)
T KOG0277|consen 187 EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-----P--L--FELNGHGLAVRKVKFSPHHASLLASASYDM 257 (311)
T ss_pred EeccceeEeecccccCCcEEEecCCCceEEEEehhhccc-----c--c--eeecCCceEEEEEecCcchhhHhhhccccc
Confidence 88999999999998 556899999999999999998654 1 1 68899999999999995 7999999999
Q ss_pred eEEEEcCC--CceeeEeecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEEc
Q 003423 329 TCRVWGSD--GKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 329 ~i~iwd~~--~~~~~~~~~h~~~~i~~l~~~~-~~~~l~tg~~dg~I~iwd~ 377 (821)
++|+||.. ...+.++..|+. -+..+.|++ +..++|+.+.|+.+.+|+.
T Consensus 258 T~riw~~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 258 TVRIWDPERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEecccccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 99999993 456677777777 588888886 4679999999999999984
No 52
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=5.9e-28 Score=260.41 Aligned_cols=281 Identities=20% Similarity=0.353 Sum_probs=235.3
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEee-cCCeEEEEECCCCe--eeeEEEeeccccEEeEEeccccCCCCCCccceeeEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g-~~~~i~iwd~~t~~--~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~ 92 (821)
+...|+++.|+ |+ +++++++ .++.+++|+..+++ +++.+..+.. .|.+++|++++ ..++.
T Consensus 158 ~~~sv~~~~fs--~~----g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~-~v~~~~fs~d~----------~~l~s 220 (456)
T KOG0266|consen 158 ECPSVTCVDFS--PD----GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTR-GVSDVAFSPDG----------SYLLS 220 (456)
T ss_pred ccCceEEEEEc--CC----CCeEEEccCCCcEEEeecccccchhhcccccccc-ceeeeEECCCC----------cEEEE
Confidence 46789999999 98 5667766 49999999998887 7777765555 79999999764 25666
Q ss_pred EEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEE
Q 003423 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (821)
Q Consensus 93 ~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~ 172 (821)
++.|++++||++... ...++.+++|...|++++|+| +++++++|+.|++|+|||+.+++++..
T Consensus 221 ~s~D~tiriwd~~~~--------------~~~~~~l~gH~~~v~~~~f~p---~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 221 GSDDKTLRIWDLKDD--------------GRNLKTLKGHSTYVTSVAFSP---DGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred ecCCceEEEeeccCC--------------CeEEEEecCCCCceEEEEecC---CCCEEEEecCCCcEEEEeccCCeEEEe
Confidence 667999999999432 367899999999999999999 899999999999999999999999999
Q ss_pred EccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccccccee--eEE
Q 003423 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV--NLF 250 (821)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 250 (821)
+..|... +.+++| ++++.+|++++.||.|++||+. .+. +..
T Consensus 284 l~~hs~~-is~~~f---~~d~~~l~s~s~d~~i~vwd~~---------------------------------~~~~~~~~ 326 (456)
T KOG0266|consen 284 LKGHSDG-ISGLAF---SPDGNLLVSASYDGTIRVWDLE---------------------------------TGSKLCLK 326 (456)
T ss_pred eeccCCc-eEEEEE---CCCCCEEEEcCCCccEEEEECC---------------------------------CCceeeee
Confidence 9988874 445555 7899999999999999999998 334 456
Q ss_pred EEecCCCc--EEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEE---EEc--CCEEEE
Q 003423 251 RLVGHEGS--IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC---CLT--DSFIIT 323 (821)
Q Consensus 251 ~~~~h~~~--I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v---~~~--~~~l~s 323 (821)
.+.+++.. +.+++|+|++.+|++++.|+++++||+..... . ....+|...++++ ... +.++++
T Consensus 327 ~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~i~s 396 (456)
T KOG0266|consen 327 LLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS-----V-----GTYTGHSNLVRCIFSPTLSTGGKLIYS 396 (456)
T ss_pred cccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc-----e-----eeecccCCcceeEecccccCCCCeEEE
Confidence 66777666 99999999999999999999999999998765 3 4666666644332 222 689999
Q ss_pred EeCCCeEEEEcC-CCceeeEeecc-cCCCeEEEEEecCCCEEEEEe--CCCcEEEEEcC
Q 003423 324 AGEDCTCRVWGS-DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAG--FDSAIKVHQFQ 378 (821)
Q Consensus 324 ~~~dg~i~iwd~-~~~~~~~~~~h-~~~~i~~l~~~~~~~~l~tg~--~dg~I~iwd~~ 378 (821)
+++|+.|.+|++ .+..+..+.+| .. .+..+++++..+++++++ .|+.+++|..+
T Consensus 397 g~~d~~v~~~~~~s~~~~~~l~~h~~~-~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 397 GSEDGSVYVWDSSSGGILQRLEGHSKA-AVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EeCCceEEEEeCCccchhhhhcCCCCC-ceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999999 58888899999 65 689999999999999998 78999999763
No 53
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.5e-28 Score=231.81 Aligned_cols=293 Identities=16% Similarity=0.227 Sum_probs=223.1
Q ss_pred eeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEE
Q 003423 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (821)
Q Consensus 247 ~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~ 324 (821)
+..+.+..|.+.|+-+.||++|++|||++.|.+..+|++..... .+.. .++.+|..+|..+.|+ ++++++|
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-----~kl~--~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-----FKLK--KTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-----eeee--eeeecccCceEEEEECCCCCeEEec
Confidence 44556778999999999999999999999999999999877544 3333 6899999999999999 4899999
Q ss_pred eCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEe
Q 003423 325 GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSI 403 (821)
Q Consensus 325 ~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (821)
+.|-.+.+||. +|.....+....+-.+.+++|.|||..+++|+.|+.|..||++++.+...++.
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv--------------- 352 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV--------------- 352 (519)
T ss_pred CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccc---------------
Confidence 99999999999 67766666544344689999999999999999999999999987654433322
Q ss_pred ecCCcccceeccCCCCcceEEEEeecCCeEEE-EecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCC
Q 003423 404 KIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCG 482 (821)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~-~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~ 482 (821)
....|.+++.++||+.++ .+.+..+. +++..+..-..+ ..+..++++..++.
T Consensus 353 --------------r~~~v~dlait~Dgk~vl~v~~d~~i~---l~~~e~~~dr~l--ise~~~its~~iS~-------- 405 (519)
T KOG0293|consen 353 --------------RDPKVHDLAITYDGKYVLLVTVDKKIR---LYNREARVDRGL--ISEEQPITSFSISK-------- 405 (519)
T ss_pred --------------ccceeEEEEEcCCCcEEEEEeccccee---eechhhhhhhcc--ccccCceeEEEEcC--------
Confidence 113488999999996554 45555554 444333221112 23456777777754
Q ss_pred CCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecC-CCeEEEEECCCCcEEEeeecCCCCcccc
Q 003423 483 IDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSL-GHRFIFTADPKGRLKLWQLCDPFSSVCY 561 (821)
Q Consensus 483 ~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 561 (821)
+++++++.-.+..+++||+.+.... .....+. .....+-.|+.- +..++++|+.|+.|+||+...+
T Consensus 406 d~k~~LvnL~~qei~LWDl~e~~lv----~kY~Ghk---q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg------ 472 (519)
T KOG0293|consen 406 DGKLALVNLQDQEIHLWDLEENKLV----RKYFGHK---QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG------ 472 (519)
T ss_pred CCcEEEEEcccCeeEEeecchhhHH----HHhhccc---ccceEEEeccCCCCcceEEecCCCceEEEEEccCC------
Confidence 4588889999999999999854331 1111111 223334456653 4589999999999999999888
Q ss_pred cCCccceeeeeEEEecccCceEEEEEeecC-CCEEEEEcCCCcEEEEecC
Q 003423 562 ESSKTNNVFLVAEFSSCFGARIMCLDASFE-DEVLFCGDLRGNLVLFPLL 610 (821)
Q Consensus 562 ~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-~~~L~sgs~dG~i~iw~~~ 610 (821)
.+++.+ .+|...|+|++|+|. ..++|+|+.||+|+||-..
T Consensus 473 --------kll~~L-sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 473 --------KLLAVL-SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred --------ceeEee-cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 777777 899999999999985 4589999999999999766
No 54
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=5.2e-29 Score=238.17 Aligned_cols=271 Identities=13% Similarity=0.188 Sum_probs=225.1
Q ss_pred ccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCC
Q 003423 66 IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (821)
Q Consensus 66 ~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~ 145 (821)
-.|..+.|.|++ .++++++..|.+.+|+... +.....++.|+++|+++.|++
T Consensus 97 c~V~~v~WtPeG----------RRLltgs~SGEFtLWNg~~---------------fnFEtilQaHDs~Vr~m~ws~--- 148 (464)
T KOG0284|consen 97 CPVNVVRWTPEG----------RRLLTGSQSGEFTLWNGTS---------------FNFETILQAHDSPVRTMKWSH--- 148 (464)
T ss_pred cceeeEEEcCCC----------ceeEeecccccEEEecCce---------------eeHHHHhhhhcccceeEEEcc---
Confidence 368888898765 3677777789999999752 334556789999999999999
Q ss_pred CCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCc
Q 003423 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (821)
Q Consensus 146 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 225 (821)
++.++++|+.+|.|++|+..- ..++.+..++...+..++| +|++..+++++.||.|+|||..
T Consensus 149 ~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlaf---SpnDskF~t~SdDg~ikiWdf~-------------- 210 (464)
T KOG0284|consen 149 NGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAF---SPNDSKFLTCSDDGTIKIWDFR-------------- 210 (464)
T ss_pred CCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheecc---CCCCceeEEecCCCeEEEEecc--------------
Confidence 999999999999999999653 3444555665445566666 6788999999999999999988
Q ss_pred ccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEe
Q 003423 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (821)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 305 (821)
..+....+.||.-.|.+++|+|...++|++|+|..|++||.+++.+ + .++.
T Consensus 211 -------------------~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~c-----l-----~tlh 261 (464)
T KOG0284|consen 211 -------------------MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSC-----L-----ATLH 261 (464)
T ss_pred -------------------CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcch-----h-----hhhh
Confidence 4445556789999999999999999999999999999999999876 4 6899
Q ss_pred ccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEEcCC-c
Q 003423 306 GHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL-SSLLVTAGFDSAIKVHQFQA-F 380 (821)
Q Consensus 306 ~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~-~~~l~tg~~dg~I~iwd~~~-~ 380 (821)
+|+..|..+.|. +++|+|++.|..++++|+ .-+.+.++++|.. .++++.|+|- ..+|.+||.||.|..|.+.. .
T Consensus 262 ~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 262 GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh-hheeeccccccccceeeccCCCceEEEeccccc
Confidence 999999999998 589999999999999999 4788999999998 5999999995 47889999999999999852 1
Q ss_pred CCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCc
Q 003423 381 LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY 441 (821)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~ 441 (821)
.+.. .-.+|+..|.+++++|=|.+|++.++.+
T Consensus 341 p~~~-----------------------------i~~AHd~~iwsl~~hPlGhil~tgsnd~ 372 (464)
T KOG0284|consen 341 PLGE-----------------------------IPPAHDGEIWSLAYHPLGHILATGSNDR 372 (464)
T ss_pred cccC-----------------------------CCcccccceeeeeccccceeEeecCCCc
Confidence 1111 1235667899999999999999876544
No 55
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=1.1e-26 Score=239.64 Aligned_cols=278 Identities=22% Similarity=0.431 Sum_probs=230.1
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|.++|++++|+ |+ +.+|+++. ++.|.+||+.+++....+..+.. .+..+.+.++. ..++++.
T Consensus 8 h~~~i~~~~~~--~~----~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~----------~~l~~~~ 70 (289)
T cd00200 8 HTGGVTCVAFS--PD----GKLLATGSGDGTIKVWDLETGELLRTLKGHTG-PVRDVAASADG----------TYLASGS 70 (289)
T ss_pred cCCCEEEEEEc--CC----CCEEEEeecCcEEEEEEeeCCCcEEEEecCCc-ceeEEEECCCC----------CEEEEEc
Confidence 67899999999 88 56777766 89999999999988777776554 67788888652 2455555
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
.++.+++|++... +....+..|...|.++.|+| +++++++++.|+.|++||+.+++....+.
T Consensus 71 ~~~~i~i~~~~~~---------------~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 132 (289)
T cd00200 71 SDKTIRLWDLETG---------------ECVRTLTGHTSYVSSVAFSP---DGRILSSSSRDKTIKVWDVETGKCLTTLR 132 (289)
T ss_pred CCCeEEEEEcCcc---------------cceEEEeccCCcEEEEEEcC---CCCEEEEecCCCeEEEEECCCcEEEEEec
Confidence 6899999999853 34556678888999999999 88888888889999999999888877777
Q ss_pred cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (821)
.+.. .+.++.+ ++++.++++++.+|.|++||+. ..+.+..+..
T Consensus 133 ~~~~-~i~~~~~---~~~~~~l~~~~~~~~i~i~d~~---------------------------------~~~~~~~~~~ 175 (289)
T cd00200 133 GHTD-WVNSVAF---SPDGTFVASSSQDGTIKLWDLR---------------------------------TGKCVATLTG 175 (289)
T ss_pred cCCC-cEEEEEE---cCcCCEEEEEcCCCcEEEEEcc---------------------------------ccccceeEec
Confidence 4443 3556666 4567888888889999999998 5566677778
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEEeCCCeEEE
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRV 332 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~~~dg~i~i 332 (821)
|...|.+++|+|+++.+++++.|+.|++||+..++. . ..+..|...+.+++|++ .++++++.|+.+++
T Consensus 176 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-----~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i 245 (289)
T cd00200 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC-----L-----GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245 (289)
T ss_pred CccccceEEECCCcCEEEEecCCCcEEEEECCCCce-----e-----cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999999999999987654 2 34557888999999994 67777777999999
Q ss_pred EcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 003423 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (821)
Q Consensus 333 wd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd 376 (821)
|++ .++....+..|.. .|.+++|+|+++.|++++.||.|++|+
T Consensus 246 ~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 246 WDLRTGECVQTLSGHTN-SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCceeEEEccccCC-cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999 5788888888877 699999999999999999999999996
No 56
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=2.5e-26 Score=267.59 Aligned_cols=286 Identities=17% Similarity=0.235 Sum_probs=218.1
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCC----e----eeeEEEeeccccEEeEEeccccCCCCCCccc
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----T----LIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~----~----~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 86 (821)
|.+.|++++|+ |+ +.++++|. |+.|+|||..+. . +...+. ....|.+++|++.. .
T Consensus 482 ~~~~V~~i~fs--~d----g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~----~---- 545 (793)
T PLN00181 482 SSNLVCAIGFD--RD----GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA--SRSKLSGICWNSYI----K---- 545 (793)
T ss_pred CCCcEEEEEEC--CC----CCEEEEEeCCCEEEEEECCcccccccccccceEEec--ccCceeeEEeccCC----C----
Confidence 67789999999 98 56776655 899999998642 1 112222 23468888887531 1
Q ss_pred eeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccC
Q 003423 87 VTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (821)
Q Consensus 87 ~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~ 166 (821)
..++++..|+.|++||+... +.+..+.+|.+.|++++|+| .++.+|++|+.|++|++||+.+
T Consensus 546 -~~las~~~Dg~v~lWd~~~~---------------~~~~~~~~H~~~V~~l~~~p--~~~~~L~Sgs~Dg~v~iWd~~~ 607 (793)
T PLN00181 546 -SQVASSNFEGVVQVWDVARS---------------QLVTEMKEHEKRVWSIDYSS--ADPTLLASGSDDGSVKLWSINQ 607 (793)
T ss_pred -CEEEEEeCCCeEEEEECCCC---------------eEEEEecCCCCCEEEEEEcC--CCCCEEEEEcCCCEEEEEECCC
Confidence 23455556899999998743 45677889999999999996 2678999999999999999999
Q ss_pred CceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccce
Q 003423 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (821)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (821)
+..+..+..+. .+.++.|. ++++.++++|+.||.|++||+.. ..
T Consensus 608 ~~~~~~~~~~~--~v~~v~~~--~~~g~~latgs~dg~I~iwD~~~--------------------------------~~ 651 (793)
T PLN00181 608 GVSIGTIKTKA--NICCVQFP--SESGRSLAFGSADHKVYYYDLRN--------------------------------PK 651 (793)
T ss_pred CcEEEEEecCC--CeEEEEEe--CCCCCEEEEEeCCCeEEEEECCC--------------------------------CC
Confidence 98887776543 34555553 35788999999999999999971 12
Q ss_pred eeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEE
Q 003423 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (821)
Q Consensus 247 ~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~ 324 (821)
..+..+.+|...|.++.|. ++.+|++++.|++|++||+...... .....+ ..+.+|...+.+++|+ +.+|++|
T Consensus 652 ~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~--~~~~~l--~~~~gh~~~i~~v~~s~~~~~lasg 726 (793)
T PLN00181 652 LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG--INETPL--HSFMGHTNVKNFVGLSVSDGYIATG 726 (793)
T ss_pred ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc--cCCcce--EEEcCCCCCeeEEEEcCCCCEEEEE
Confidence 2456677999999999997 6789999999999999999754210 001122 5788999999999998 5899999
Q ss_pred eCCCeEEEEcCC-CceeeEe-------------ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 325 GEDCTCRVWGSD-GKQLKMI-------------KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 325 ~~dg~i~iwd~~-~~~~~~~-------------~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
+.|+.+++|+.. ...+..+ ..+.. .|.+++|+|++..|++|+.||.|++|++
T Consensus 727 s~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 727 SETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQ-FISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred eCCCEEEEEECCCCCceEEEecccCCcccccccCCCCc-EEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999973 3222211 12223 5999999999999999999999999986
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.8e-27 Score=207.04 Aligned_cols=275 Identities=19% Similarity=0.243 Sum_probs=218.8
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g 95 (821)
+.++|.++.|+ -| +..-|.+|.|.+|++|+...|.+++++..| +..|...+.+.+. ..+..++|
T Consensus 16 ~qgaV~avryN--~d---GnY~ltcGsdrtvrLWNp~rg~liktYsgh-G~EVlD~~~s~Dn----------skf~s~Gg 79 (307)
T KOG0316|consen 16 AQGAVRAVRYN--VD---GNYCLTCGSDRTVRLWNPLRGALIKTYSGH-GHEVLDAALSSDN----------SKFASCGG 79 (307)
T ss_pred cccceEEEEEc--cC---CCEEEEcCCCceEEeecccccceeeeecCC-Cceeeeccccccc----------cccccCCC
Confidence 67899999999 77 334455577999999999999999999974 4468888777442 23555677
Q ss_pred CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC--ceeEEE
Q 003423 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SIILEV 173 (821)
Q Consensus 96 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~--~~~~~~ 173 (821)
|+.+.+||+.++ +..+.+.+|...|+.++|+. +...+++|+-|.++++||.++. +.++.+
T Consensus 80 Dk~v~vwDV~TG---------------kv~Rr~rgH~aqVNtV~fNe---esSVv~SgsfD~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 80 DKAVQVWDVNTG---------------KVDRRFRGHLAQVNTVRFNE---ESSVVASGSFDSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred CceEEEEEcccC---------------eeeeecccccceeeEEEecC---cceEEEeccccceeEEEEcccCCCCccchh
Confidence 999999999965 67899999999999999998 8899999999999999999864 344444
Q ss_pred ccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe
Q 003423 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (821)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (821)
... ...+.|+.. .+..|++|+.||+++.||++ .+.......
T Consensus 142 dea-~D~V~Si~v-----~~heIvaGS~DGtvRtydiR---------------------------------~G~l~sDy~ 182 (307)
T KOG0316|consen 142 DEA-KDGVSSIDV-----AEHEIVAGSVDGTVRTYDIR---------------------------------KGTLSSDYF 182 (307)
T ss_pred hhh-cCceeEEEe-----cccEEEeeccCCcEEEEEee---------------------------------cceeehhhc
Confidence 332 233556654 56789999999999999999 455544444
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEE--EEEEc--CCEEEEEeCCCe
Q 003423 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW--DCCLT--DSFIITAGEDCT 329 (821)
Q Consensus 254 ~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~--~v~~~--~~~l~s~~~dg~ 329 (821)
| .+|++++|+++++.++.++.|+++|+.|-.+++. . ....||...-+ .+++. ...+++|++||.
T Consensus 183 g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl-----L-----~sYkGhkn~eykldc~l~qsdthV~sgSEDG~ 250 (307)
T KOG0316|consen 183 G--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL-----L-----KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGK 250 (307)
T ss_pred C--CcceeEEecCCCCEEEEeeccceeeecccchhHH-----H-----HHhcccccceeeeeeeecccceeEEeccCCce
Confidence 4 4899999999999999999999999999999876 4 47778876543 34454 689999999999
Q ss_pred EEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 003423 330 CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (821)
Q Consensus 330 i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd 376 (821)
+.+||+ ++..+..+..+....+.+++++|.-..+++++.. .+..|-
T Consensus 251 Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 251 VYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFWY 297 (307)
T ss_pred EEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceecee
Confidence 999999 8888888888877448899999988777777643 455553
No 58
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=3.6e-26 Score=217.01 Aligned_cols=212 Identities=21% Similarity=0.271 Sum_probs=166.1
Q ss_pred CCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEE
Q 003423 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWK 209 (821)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd 209 (821)
.|++||.++...+ +.+++|+.||.+++||. .|+....+.+|...+ .++..+..++....+++++.|.++++|.
T Consensus 103 ~hdDWVSsv~~~~-----~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~i-k~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 103 LHDDWVSSVKGAS-----KWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPI-KSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred cchhhhhhhcccC-----ceEEEeecCCeeEEEec-CCceEEEEecCCcce-eeeEEEecCCccceEEEecCCceEEEEE
Confidence 4899999998754 78999999999999995 677888888777654 3444444445566899999999999999
Q ss_pred cccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCc
Q 003423 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (821)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~ 289 (821)
++.++. ....+..-.||++.|-+|...++|..++|||.|.+|+||+.....
T Consensus 176 ~~~~~~-----------------------------~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~ 226 (423)
T KOG0313|consen 176 WNVGEN-----------------------------KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDE 226 (423)
T ss_pred ecCchh-----------------------------hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCc
Confidence 882111 122333334999999999999999999999999999999933211
Q ss_pred cc--C--CC-----------CceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeE
Q 003423 290 WK--D--SD-----------SIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIW 352 (821)
Q Consensus 290 ~~--~--~~-----------~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~ 352 (821)
.. + +. .....+...+.||..+|.++.|. ...+++++.|.+|+.||+ .++.+.++.+.. .+.
T Consensus 227 ~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~k--sl~ 304 (423)
T KOG0313|consen 227 EDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNK--SLN 304 (423)
T ss_pred cccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCc--cee
Confidence 10 0 00 00001125889999999999999 589999999999999999 788888887654 599
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 353 RCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 353 ~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
++.++|..++|++|+.|..|++||.+.
T Consensus 305 ~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 305 CISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred EeecccccceeeecCCCCceeecCCCC
Confidence 999999999999999999999999854
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.4e-26 Score=203.00 Aligned_cols=251 Identities=19% Similarity=0.240 Sum_probs=207.6
Q ss_pred ceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeC
Q 003423 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (821)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (821)
+..+.+.+|+++|.++.|+- +|++.+||+.|.+|++|+...+.++++..+|...++-. +. +.|...+++++.|
T Consensus 8 kr~~~l~~~qgaV~avryN~---dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~-~~---s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNV---DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDA-AL---SSDNSKFASCGGD 80 (307)
T ss_pred hhceeecccccceEEEEEcc---CCCEEEEcCCCceEEeecccccceeeeecCCCceeeec-cc---cccccccccCCCC
Confidence 35677889999999999999 99999999999999999999999999999887765433 22 4578899999999
Q ss_pred CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 003423 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (821)
Q Consensus 203 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~i 282 (821)
..+.+||+. +++.+..+.+|.+.|+.++|+.+...+++|+.|.++|+
T Consensus 81 k~v~vwDV~---------------------------------TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~ 127 (307)
T KOG0316|consen 81 KAVQVWDVN---------------------------------TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRL 127 (307)
T ss_pred ceEEEEEcc---------------------------------cCeeeeecccccceeeEEEecCcceEEEeccccceeEE
Confidence 999999999 88999999999999999999999999999999999999
Q ss_pred EecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCC
Q 003423 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (821)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~ 361 (821)
||-+.... +++ +.+......|.++...+..|++|+.||++|.||+ .|+...-+.+| +|+++.|+++++
T Consensus 128 wDCRS~s~------ePi--Qildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~n 196 (307)
T KOG0316|consen 128 WDCRSRSF------EPI--QILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGN 196 (307)
T ss_pred EEcccCCC------Ccc--chhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCC---cceeEEecCCCC
Confidence 99988653 444 4666677889999999999999999999999999 67776666655 699999999999
Q ss_pred EEEEEeCCCcEEEEEcCC-cCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCC
Q 003423 362 LLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (821)
Q Consensus 362 ~l~tg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g 440 (821)
..+.++.|+++++.|-++ +.++.+.+|... +..+.|.-...+...+.++.+|
T Consensus 197 c~La~~l~stlrLlDk~tGklL~sYkGhkn~---------------------------eykldc~l~qsdthV~sgSEDG 249 (307)
T KOG0316|consen 197 CSLASSLDSTLRLLDKETGKLLKSYKGHKNM---------------------------EYKLDCCLNQSDTHVFSGSEDG 249 (307)
T ss_pred EEEEeeccceeeecccchhHHHHHhcccccc---------------------------eeeeeeeecccceeEEeccCCc
Confidence 999999999999999854 566677766310 1112222222345667778899
Q ss_pred cEEEEEecCCC
Q 003423 441 YLYHTKLCDMD 451 (821)
Q Consensus 441 ~~~~~~i~~~~ 451 (821)
.++.|.+-+..
T Consensus 250 ~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 250 KVYFWDLVDET 260 (307)
T ss_pred eEEEEEeccce
Confidence 99987776643
No 60
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=4.9e-26 Score=245.53 Aligned_cols=276 Identities=19% Similarity=0.291 Sum_probs=223.0
Q ss_pred eccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEee
Q 003423 63 FHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (821)
Q Consensus 63 ~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~ 142 (821)
++...|.++.|++++ ..++.+..++.+++|+..... -...+.+.+|...|.+++|+|
T Consensus 157 ~~~~sv~~~~fs~~g----------~~l~~~~~~~~i~~~~~~~~~-------------~~~~~~l~~h~~~v~~~~fs~ 213 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDG----------RALAAASSDGLIRIWKLEGIK-------------SNLLRELSGHTRGVSDVAFSP 213 (456)
T ss_pred cccCceEEEEEcCCC----------CeEEEccCCCcEEEeeccccc-------------chhhccccccccceeeeEECC
Confidence 334568888888664 245555679999999995332 024566689999999999999
Q ss_pred cCCCCCEEEEEECCCcEEEEEc-cCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCC
Q 003423 143 VCNGNRSLAIGCSDNSIRVWDI-SNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNS 221 (821)
Q Consensus 143 ~~~~~~~l~t~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 221 (821)
++.++++|+.|++|+|||+ ..+..++.+.+|... +++++| +++++++++|+.|++|+|||+.
T Consensus 214 ---d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~-v~~~~f---~p~g~~i~Sgs~D~tvriWd~~---------- 276 (456)
T KOG0266|consen 214 ---DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY-VTSVAF---SPDGNLLVSGSDDGTVRIWDVR---------- 276 (456)
T ss_pred ---CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc-eEEEEe---cCCCCEEEEecCCCcEEEEecc----------
Confidence 9999999999999999999 555788899877664 588888 5778999999999999999999
Q ss_pred CCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeec
Q 003423 222 PEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (821)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~ 301 (821)
.+.+...+.+|.+.|.+++|++++++|++++.|+.|++||+.++.. . +.
T Consensus 277 -----------------------~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~-----~-~~-- 325 (456)
T KOG0266|consen 277 -----------------------TGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK-----L-CL-- 325 (456)
T ss_pred -----------------------CCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce-----e-ee--
Confidence 6788999999999999999999999999999999999999999873 1 11
Q ss_pred eEEeccce--eEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCC--CeEEEEEecCCCEEEEEeCCCcEEE
Q 003423 302 SVLYGHNA--RVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR--GIWRCLYDSLSSLLVTAGFDSAIKV 374 (821)
Q Consensus 302 ~~~~~h~~--~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~--~i~~l~~~~~~~~l~tg~~dg~I~i 374 (821)
..+.++.. ++++++|+ +.+++++..|+.+++||+ .++.+..+.+|... .+.+...++.+.++++|+.|+.|.+
T Consensus 326 ~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~ 405 (456)
T KOG0266|consen 326 KLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV 405 (456)
T ss_pred ecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEE
Confidence 24455544 49999998 589999999999999999 68899999998873 3444455788999999999999999
Q ss_pred EEcCC-cCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEec
Q 003423 375 HQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (821)
Q Consensus 375 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~ 438 (821)
|++.. ..++.+++|. ...+..+++++...+++...
T Consensus 406 ~~~~s~~~~~~l~~h~-----------------------------~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 406 WDSSSGGILQRLEGHS-----------------------------KAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred EeCCccchhhhhcCCC-----------------------------CCceeccccCCCcCeeeecC
Confidence 99964 3333443331 34477788888777777765
No 61
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=3.5e-27 Score=230.92 Aligned_cols=293 Identities=15% Similarity=0.209 Sum_probs=219.9
Q ss_pred ceeeEEEEecCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEE
Q 003423 245 TAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI 321 (821)
Q Consensus 245 ~~~~~~~~~~h~~~I~~l~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l 321 (821)
..+.+.++.||+..|.++.|.| .+.+|+|++.|+.|+||++.... +++ .++.+|..+|.+++|+ +..+
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-------~~l--rtf~gH~k~Vrd~~~s~~g~~f 273 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-------RCL--RTFKGHRKPVRDASFNNCGTSF 273 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-------cee--hhhhcchhhhhhhhccccCCee
Confidence 3467888999999999999999 88899999999999999998832 222 6999999999999999 7899
Q ss_pred EEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEEcCCc-CCCcccCCccccccCCCc
Q 003423 322 ITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRT 398 (821)
Q Consensus 322 ~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~-~~l~tg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~ 398 (821)
+|++.|+.+++||. +|+++..+... ..+.++.|+|++ +.+++|+.|+.|+.||++.. .++.+
T Consensus 274 LS~sfD~~lKlwDtETG~~~~~f~~~--~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY------------- 338 (503)
T KOG0282|consen 274 LSASFDRFLKLWDTETGQVLSRFHLD--KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY------------- 338 (503)
T ss_pred eeeecceeeeeeccccceEEEEEecC--CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH-------------
Confidence 99999999999999 89999888654 358999999998 89999999999999999653 23333
Q ss_pred ceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCC
Q 003423 399 EIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPK 478 (821)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 478 (821)
+.|-+.|..+.|.++|..++++++.. .+++|+.....-.+..........-|+...
T Consensus 339 -----------------d~hLg~i~~i~F~~~g~rFissSDdk--s~riWe~~~~v~ik~i~~~~~hsmP~~~~~----- 394 (503)
T KOG0282|consen 339 -----------------DRHLGAILDITFVDEGRRFISSSDDK--SVRIWENRIPVPIKNIADPEMHTMPCLTLH----- 394 (503)
T ss_pred -----------------HhhhhheeeeEEccCCceEeeeccCc--cEEEEEcCCCccchhhcchhhccCcceecC-----
Confidence 23345689999999998888776554 234665433221111111112222233333
Q ss_pred CCCCCCcEEEEecCCccEEEEEecCCCC-CCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCC
Q 003423 479 YPCGIDDWVALGDGKGNMTIVRVVGDVH-TPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFS 557 (821)
Q Consensus 479 ~s~~~~~~l~~g~~~g~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 557 (821)
|.+++++.-+.++.|.+|.+...-. ..+.. +..+. ..-..+...++|||++|++|+.||.+.+||+.+.
T Consensus 395 ---P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~--feGh~---vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-- 464 (503)
T KOG0282|consen 395 ---PNGKWFAAQSMDNYIAIFSTVPPFRLNKKKR--FEGHS---VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT-- 464 (503)
T ss_pred ---CCCCeehhhccCceEEEEecccccccCHhhh--hccee---ccCceeeEEEcCCCCeEEeecCCccEEEeechhh--
Confidence 5669999999999999998654211 11111 11111 1123344568899999999999999999999887
Q ss_pred cccccCCccceeeeeEEEecccCceEEEEEeecC-CCEEEEEcCCCcEEEEe
Q 003423 558 SVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE-DEVLFCGDLRGNLVLFP 608 (821)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-~~~L~sgs~dG~i~iw~ 608 (821)
.+...+ ..|...++.++|.|. ...+|+++.||.|++|+
T Consensus 465 ------------kl~~~l-kah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 465 ------------KLVSKL-KAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ------------hhhhcc-ccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 455555 788999999999986 45899999999999996
No 62
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=7e-27 Score=209.08 Aligned_cols=203 Identities=17% Similarity=0.214 Sum_probs=175.3
Q ss_pred eeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEE
Q 003423 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEI 205 (821)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i 205 (821)
....||..+|.+++|+|..++|-+|++++.|+.=.+-+-++|.-+.++.+|... +|++.+ +.+..+.|+++.|-+-
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkga-vw~~~l---~~na~~aasaaadfta 83 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGA-VWSATL---NKNATRAASAAADFTA 83 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcc-eeeeec---Cchhhhhhhhcccchh
Confidence 456799999999999998889999999999999888888899999999988764 788776 4567788899999999
Q ss_pred EEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 003423 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (821)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~ 285 (821)
+|||.. ++..++.+ .|+.-|..++|+.|.++|+||+.++.+||+|+
T Consensus 84 kvw~a~---------------------------------tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 84 KVWDAV---------------------------------TGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred hhhhhh---------------------------------hhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 999988 56666666 49999999999999999999999999999999
Q ss_pred ccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCE
Q 003423 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (821)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~ 362 (821)
+..+. . +..+.+|.+.|..+.|. ++.|++...|++||+||. ++..++++.... +|+++.++++|++
T Consensus 130 n~p~A-----p----p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~i 198 (334)
T KOG0278|consen 130 NRPKA-----P----PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRI 198 (334)
T ss_pred cCCCC-----C----chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCCE
Confidence 88654 1 15788999999999986 789999999999999999 899999987654 5999999999987
Q ss_pred EEEEeCCCcEEEEEcC
Q 003423 363 LVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 363 l~tg~~dg~I~iwd~~ 378 (821)
|.++. -+.|.+||..
T Consensus 199 lTia~-gssV~Fwdak 213 (334)
T KOG0278|consen 199 LTIAY-GSSVKFWDAK 213 (334)
T ss_pred EEEec-CceeEEeccc
Confidence 76654 5679999874
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=1.9e-24 Score=251.93 Aligned_cols=319 Identities=14% Similarity=0.171 Sum_probs=229.9
Q ss_pred CCeEEEEECCCCeeeeEEEe----eccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCcc
Q 003423 43 GSQVLLYDLEAGTLIRPFQV----FHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPET 118 (821)
Q Consensus 43 ~~~i~iwd~~t~~~~~~~~~----~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~ 118 (821)
+|-+++|+..+.+....++. .+...|.+++|++++ ..+++++.|+.|+||++.........
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg----------~~latgg~D~~I~iwd~~~~~~~~~~----- 521 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDG----------EFFATAGVNKKIKIFECESIIKDGRD----- 521 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCC----------CEEEEEeCCCEEEEEECCcccccccc-----
Confidence 46688888877665444432 135579999999663 24455556899999997632100000
Q ss_pred ccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEE
Q 003423 119 CVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (821)
Q Consensus 119 ~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (821)
.......+. +...|.+++|+| ..+.+||+++.||+|++||+.+++.+..+..|.. .++++.|.+ .++.+|++
T Consensus 522 --~~~~~~~~~-~~~~v~~l~~~~--~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~-~V~~l~~~p--~~~~~L~S 593 (793)
T PLN00181 522 --IHYPVVELA-SRSKLSGICWNS--YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEK-RVWSIDYSS--ADPTLLAS 593 (793)
T ss_pred --cccceEEec-ccCceeeEEecc--CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCC-CEEEEEEcC--CCCCEEEE
Confidence 001122333 346799999987 2578999999999999999999988888877654 477888742 36789999
Q ss_pred EeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEc-CCCCEEEEEeCC
Q 003423 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS-SCGSKLVSVSDD 277 (821)
Q Consensus 199 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s-~~~~~l~s~s~D 277 (821)
|+.||.|++||+. ....+..+..| ..|.++.|+ +++.+|++|+.|
T Consensus 594 gs~Dg~v~iWd~~---------------------------------~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 594 GSDDGSVKLWSIN---------------------------------QGVSIGTIKTK-ANICCVQFPSESGRSLAFGSAD 639 (793)
T ss_pred EcCCCEEEEEECC---------------------------------CCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCC
Confidence 9999999999998 45556666644 679999995 578999999999
Q ss_pred CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEEEcCC-------CceeeEeecccCC
Q 003423 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSD-------GKQLKMIKEHIGR 349 (821)
Q Consensus 278 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~~-------~~~~~~~~~h~~~ 349 (821)
+.|++||++.... .. ..+.+|...|+++.|. +.++++++.|++|++||+. .+.+..+.+|..
T Consensus 640 g~I~iwD~~~~~~-----~~----~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~- 709 (793)
T PLN00181 640 HKVYYYDLRNPKL-----PL----CTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN- 709 (793)
T ss_pred CeEEEEECCCCCc-----cc----eEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC-
Confidence 9999999987542 11 4677999999999997 6899999999999999983 356788999988
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEEcCCcC-CCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEee
Q 003423 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL-PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428 (821)
Q Consensus 350 ~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~ 428 (821)
.+..+++++++.+|++|+.|+.|++|+..... +..+ ........ .......+...|.+++|+
T Consensus 710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~----------------~~~~~~~~-~~~~~~~~~~~V~~v~ws 772 (793)
T PLN00181 710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY----------------KFKTIDPV-SGLEVDDASQFISSVCWR 772 (793)
T ss_pred CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE----------------ecccCCcc-cccccCCCCcEEEEEEEc
Confidence 69999999999999999999999999974321 1000 00000000 000123345679999999
Q ss_pred cCCeEEEE-ecCCcEEEE
Q 003423 429 SEDTLYIA-TNHGYLYHT 445 (821)
Q Consensus 429 ~~~~~l~~-~~~g~~~~~ 445 (821)
+++..+++ +.+|.+..+
T Consensus 773 ~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 773 GQSSTLVAANSTGNIKIL 790 (793)
T ss_pred CCCCeEEEecCCCcEEEE
Confidence 98865555 456666543
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=1.3e-24 Score=223.97 Aligned_cols=282 Identities=20% Similarity=0.340 Sum_probs=223.3
Q ss_pred eeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEE
Q 003423 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEI 205 (821)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i 205 (821)
..+.+|.++|++++|+| ++++|++++.||.|++|++.+++....+..+... +..+.+ .+++..+++++.+|.|
T Consensus 3 ~~~~~h~~~i~~~~~~~---~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~-i~~~~~---~~~~~~l~~~~~~~~i 75 (289)
T cd00200 3 RTLKGHTGGVTCVAFSP---DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-VRDVAA---SADGTYLASGSSDKTI 75 (289)
T ss_pred hHhcccCCCEEEEEEcC---CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcc-eeEEEE---CCCCCEEEEEcCCCeE
Confidence 45678999999999999 9999999999999999999988877777666543 344555 4667899999999999
Q ss_pred EEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 003423 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (821)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~ 285 (821)
++|++. .......+.+|...|.++.|+|+++++++++.|+.|++||+
T Consensus 76 ~i~~~~---------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 76 RLWDLE---------------------------------TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred EEEEcC---------------------------------cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 999998 44566677789999999999999889999988999999999
Q ss_pred ccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCE
Q 003423 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (821)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~ 362 (821)
.+.+. . ..+..|...|.+++|++ .++++++.|+.+++||+ .++.+..+..|.. .+.+++++|+++.
T Consensus 123 ~~~~~-----~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~ 191 (289)
T cd00200 123 ETGKC-----L-----TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEK 191 (289)
T ss_pred CCcEE-----E-----EEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc-ccceEEECCCcCE
Confidence 86544 2 35567889999999995 66777777999999999 5788888888877 6999999999999
Q ss_pred EEEEeCCCcEEEEEcCC-cCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEec-CC
Q 003423 363 LVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN-HG 440 (821)
Q Consensus 363 l~tg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~-~g 440 (821)
+++++.|+.|++||++. ..... ...+...+.+++|++++.++++.. +|
T Consensus 192 l~~~~~~~~i~i~d~~~~~~~~~------------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 192 LLSSSSDGTIKLWDLSTGKCLGT------------------------------LRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred EEEecCCCcEEEEECCCCceecc------------------------------hhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 99999999999999954 11111 112345699999999988888877 88
Q ss_pred cEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEE
Q 003423 441 YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (821)
Q Consensus 441 ~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~ 500 (821)
.+..+++.. ........ .+...+.++.+.+ ++..+++++.||.+++|+
T Consensus 242 ~i~i~~~~~---~~~~~~~~-~~~~~i~~~~~~~--------~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRT---GECVQTLS-GHTNSVTSLAWSP--------DGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCC---ceeEEEcc-ccCCcEEEEEECC--------CCCEEEEecCCCeEEecC
Confidence 887655443 22122222 3345677777755 348999999999999995
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=239.70 Aligned_cols=271 Identities=23% Similarity=0.379 Sum_probs=232.7
Q ss_pred eeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeE-EEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRP-FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 17 ~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~-~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
...+++..+. + .+++++. +.+|++||..++..+.. +..|.+ .|.++++... . +.++.+.
T Consensus 208 ~~~~~~~q~~--~------~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g-~V~~l~~~~~-----~-----~~lvsgS 268 (537)
T KOG0274|consen 208 DHVVLCLQLH--D------GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFG-GVWGLAFPSG-----G-----DKLVSGS 268 (537)
T ss_pred cchhhhheee--c------CeEEecCCCceeEEeecccceEEEeeccCCCC-CceeEEEecC-----C-----CEEEEEe
Confidence 4457777877 3 3666666 79999999999998888 887776 7999998732 1 2567777
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
.|+++++||...+ ...+.+.+|.+.|.++...+ ..+++|+.|.+|++|++.++..+..+.
T Consensus 269 ~D~t~rvWd~~sg---------------~C~~~l~gh~stv~~~~~~~-----~~~~sgs~D~tVkVW~v~n~~~l~l~~ 328 (537)
T KOG0274|consen 269 TDKTERVWDCSTG---------------ECTHSLQGHTSSVRCLTIDP-----FLLVSGSRDNTVKVWDVTNGACLNLLR 328 (537)
T ss_pred cCCcEEeEecCCC---------------cEEEEecCCCceEEEEEccC-----ceEeeccCCceEEEEeccCcceEEEec
Confidence 7999999997653 68899999999999998754 578888999999999999999999888
Q ss_pred cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (821)
+ +...+.++.+ ++.++++|+.|+.|+|||+. ..+++.++.|
T Consensus 329 ~-h~~~V~~v~~-----~~~~lvsgs~d~~v~VW~~~---------------------------------~~~cl~sl~g 369 (537)
T KOG0274|consen 329 G-HTGPVNCVQL-----DEPLLVSGSYDGTVKVWDPR---------------------------------TGKCLKSLSG 369 (537)
T ss_pred c-ccccEEEEEe-----cCCEEEEEecCceEEEEEhh---------------------------------hceeeeeecC
Confidence 8 4455777765 58899999999999999999 8899999999
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccC-cccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEE
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE-YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVW 333 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iw 333 (821)
|.+.|.++.+.+. ..+++|+.|++|++||+.+. ++ . .++.+|.+-+.++.+.+++|++++.|++|++|
T Consensus 370 H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c-----~-----~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~W 438 (537)
T KOG0274|consen 370 HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKC-----I-----HTLQGHTSLVSSLLLRDNFLVSSSADGTIKLW 438 (537)
T ss_pred CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhh-----h-----hhhcCCcccccccccccceeEeccccccEEEe
Confidence 9999999988765 89999999999999999997 54 3 68999999999999999999999999999999
Q ss_pred cC-CCceeeEeec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 334 GS-DGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 334 d~-~~~~~~~~~~-h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
|. ++++++++.+ |.. .|+.+++. ...+++++.||.+++||++.
T Consensus 439 D~~~~~~~~~~~~~~~~-~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 439 DAEEGECLRTLEGRHVG-GVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred ecccCceeeeeccCCcc-cEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 99 8999999998 555 68888876 57899999999999999955
No 66
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2.4e-25 Score=211.43 Aligned_cols=272 Identities=19% Similarity=0.288 Sum_probs=212.6
Q ss_pred cceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCC
Q 003423 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (821)
Q Consensus 35 ~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~ 113 (821)
.+.+++|+ ||.++|||. .|+....+..+.+ +|..+.+.... +. + ..++.++-|+++++|.++.+..
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~-~ik~v~~v~~n----~~-~--~~fvsas~Dqtl~Lw~~~~~~~---- 181 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTG-PIKSVAWVIKN----SS-S--CLFVSASMDQTLRLWKWNVGEN---- 181 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEecCCc-ceeeeEEEecC----Cc-c--ceEEEecCCceEEEEEecCchh----
Confidence 45788876 999999995 5888888887665 78887765321 11 1 1355555699999999987642
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc-------------------------
Q 003423 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS------------------------- 168 (821)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~------------------------- 168 (821)
..+.++..+||...|-++...+ ++..+++|+.|.+|+||+..+..
T Consensus 182 -------~~~~~~~~~GHk~~V~sVsv~~---sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 182 -------KVKALKVCRGHKRSVDSVSVDS---SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred -------hhhHHhHhcccccceeEEEecC---CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 1345666679999999999999 99999999999999999933211
Q ss_pred eeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceee
Q 003423 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (821)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (821)
.+..+.+|.. .+.++.+ ++...+.+++.|.+|+.||+. .+..
T Consensus 252 P~vtl~GHt~-~Vs~V~w----~d~~v~yS~SwDHTIk~WDle---------------------------------tg~~ 293 (423)
T KOG0313|consen 252 PLVTLEGHTE-PVSSVVW----SDATVIYSVSWDHTIKVWDLE---------------------------------TGGL 293 (423)
T ss_pred ceEEeccccc-ceeeEEE----cCCCceEeecccceEEEEEee---------------------------------cccc
Confidence 1223334433 3444444 347789999999999999999 5555
Q ss_pred EEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC---CEEEEEe
Q 003423 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAG 325 (821)
Q Consensus 249 ~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~---~~l~s~~ 325 (821)
..++.+ ..+++++..+|..++|++|+.|+.+|+||.+++.. ..+. ..+.+|++.|.++.|++ ..|++++
T Consensus 294 ~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g------s~v~-~s~~gH~nwVssvkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 294 KSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG------SVVS-QSLIGHKNWVSSVKWSPTNEFQLVSGS 365 (423)
T ss_pred eeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCC------ceeE-EeeecchhhhhheecCCCCceEEEEEe
Confidence 555553 46789999999999999999999999999998743 2222 58999999999999994 7899999
Q ss_pred CCCeEEEEcC-C-CceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 326 EDCTCRVWGS-D-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 326 ~dg~i~iwd~-~-~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
.|+++++||+ . ..++..+.+|..+ |.++.|.. +..+++||.|.+|+++.-
T Consensus 366 ~D~t~klWDvRS~k~plydI~~h~DK-vl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 366 YDNTVKLWDVRSTKAPLYDIAGHNDK-VLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred cCCeEEEEEeccCCCcceeeccCCce-EEEEeccC-CceEEeccCcceEEEecc
Confidence 9999999999 3 4489999999985 99999974 678999999999999865
No 67
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=215.29 Aligned_cols=280 Identities=16% Similarity=0.240 Sum_probs=223.3
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCC---eeeeEEEeeccccEEeEEeccccCCCCCCccceeeEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~---~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l 91 (821)
|...|.-+.|| ++ ++|||+++ |.+..||++... ++.+++..|.. +|..|.|+|+- .+++
T Consensus 223 htdEVWfl~FS--~n----GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~-~V~yi~wSPDd----------ryLl 285 (519)
T KOG0293|consen 223 HTDEVWFLQFS--HN----GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQ-PVSYIMWSPDD----------RYLL 285 (519)
T ss_pred CCCcEEEEEEc--CC----CeeEeeccCCceEEEEEEecCcceeeeeeeecccC-ceEEEEECCCC----------CeEE
Confidence 78889999999 88 78999987 899999988643 44666666554 89999999762 3566
Q ss_pred EEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeE
Q 003423 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (821)
Q Consensus 92 ~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~ 171 (821)
+++.+..+.+||..++.. ...--.+|...+.+++|.| ||..+++|+.|+++..||+. |..+.
T Consensus 286 aCg~~e~~~lwDv~tgd~--------------~~~y~~~~~~S~~sc~W~p---Dg~~~V~Gs~dr~i~~wdlD-gn~~~ 347 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGDL--------------RHLYPSGLGFSVSSCAWCP---DGFRFVTGSPDRTIIMWDLD-GNILG 347 (519)
T ss_pred ecCchHheeeccCCcchh--------------hhhcccCcCCCcceeEEcc---CCceeEecCCCCcEEEecCC-cchhh
Confidence 666688999999987641 1111234568899999999 99999999999999999975 44444
Q ss_pred EEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEE
Q 003423 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (821)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (821)
..++-...-++.+++ ++|+..+++.+.|..|++++.. ......
T Consensus 348 ~W~gvr~~~v~dlai---t~Dgk~vl~v~~d~~i~l~~~e---------------------------------~~~dr~- 390 (519)
T KOG0293|consen 348 NWEGVRDPKVHDLAI---TYDGKYVLLVTVDKKIRLYNRE---------------------------------ARVDRG- 390 (519)
T ss_pred cccccccceeEEEEE---cCCCcEEEEEecccceeeechh---------------------------------hhhhhc-
Confidence 444444445777776 5799999999999999999987 222221
Q ss_pred EecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEecccee--EEEEEEc---CCEEEEEeC
Q 003423 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR--VWDCCLT---DSFIITAGE 326 (821)
Q Consensus 252 ~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~--i~~v~~~---~~~l~s~~~ 326 (821)
+..-..+|+++..|.+++++++--.+..+++||+.+... + ..+.||+.. |-.-||. ..++++|++
T Consensus 391 lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l-----v-----~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE 460 (519)
T KOG0293|consen 391 LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL-----V-----RKYFGHKQGHFIIRSCFGGGNDKFIASGSE 460 (519)
T ss_pred cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH-----H-----HHhhcccccceEEEeccCCCCcceEEecCC
Confidence 223556899999999999999999999999999997665 4 477788664 4445665 379999999
Q ss_pred CCeEEEEcC-CCceeeEeecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEEcC
Q 003423 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 327 dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~-~~l~tg~~dg~I~iwd~~ 378 (821)
|+.|+||+. .|+++..+.+|.. .|.+++|+|.. .++|+||.||+|++|...
T Consensus 461 D~kvyIWhr~sgkll~~LsGHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 461 DSKVYIWHRISGKLLAVLSGHSK-TVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CceEEEEEccCCceeEeecCCcc-eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 999999998 8999999999998 79999999965 679999999999999874
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.5e-25 Score=215.62 Aligned_cols=290 Identities=17% Similarity=0.250 Sum_probs=229.3
Q ss_pred Ccceeeccce----eeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCC
Q 003423 6 LSEWRLDVGQ----YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEG 81 (821)
Q Consensus 6 i~~w~~~~~~----~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 81 (821)
.+-|+-.+.. ...+|++|+|+ |.| ..-+++.+.-.+.||+..+...+..+.-|+. .+.++.|..++
T Consensus 11 ~~~w~~~~~~~~~ke~~~vssl~fs--p~~---P~d~aVt~S~rvqly~~~~~~~~k~~srFk~-~v~s~~fR~DG---- 80 (487)
T KOG0310|consen 11 IRYWRQETFPPVHKEHNSVSSLCFS--PKH---PYDFAVTSSVRVQLYSSVTRSVRKTFSRFKD-VVYSVDFRSDG---- 80 (487)
T ss_pred chhhhhhcccccccccCcceeEecC--CCC---CCceEEecccEEEEEecchhhhhhhHHhhcc-ceeEEEeecCC----
Confidence 3455554433 45789999999 862 3346667778899999999888887777777 58999998554
Q ss_pred CCccceeeEEEEEc-CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEE
Q 003423 82 SVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIR 160 (821)
Q Consensus 82 ~~~~~~~~~l~~~g-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~ 160 (821)
.++++++ .|.|+|||+... ..+..+.+|+.+|..+.|+| .++..|++|++|+.++
T Consensus 81 -------~LlaaGD~sG~V~vfD~k~r---------------~iLR~~~ah~apv~~~~f~~--~d~t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 81 -------RLLAAGDESGHVKVFDMKSR---------------VILRQLYAHQAPVHVTKFSP--QDNTMLVSGSDDKVVK 136 (487)
T ss_pred -------eEEEccCCcCcEEEeccccH---------------HHHHHHhhccCceeEEEecc--cCCeEEEecCCCceEE
Confidence 3555444 499999996532 35778999999999999999 3567788999999999
Q ss_pred EEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeec
Q 003423 161 VWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (821)
Q Consensus 161 iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (821)
+||+.+......+.+|.. .+-+.++. +.++..+++|+.||.|++||.+.
T Consensus 137 ~~d~s~a~v~~~l~~htD-YVR~g~~~--~~~~hivvtGsYDg~vrl~DtR~---------------------------- 185 (487)
T KOG0310|consen 137 YWDLSTAYVQAELSGHTD-YVRCGDIS--PANDHIVVTGSYDGKVRLWDTRS---------------------------- 185 (487)
T ss_pred EEEcCCcEEEEEecCCcc-eeEeeccc--cCCCeEEEecCCCceEEEEEecc----------------------------
Confidence 999999987557776654 34444443 34677999999999999999981
Q ss_pred ccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--C
Q 003423 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--D 318 (821)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~ 318 (821)
....+.++. |..+|-.+.+-|.|.++||++. ..|++||+.++.. . + .....|...|+|+++. +
T Consensus 186 ----~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~q-----l--l--~~~~~H~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 186 ----LTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQ-----L--L--TSMFNHNKTVTCLRLASDS 250 (487)
T ss_pred ----CCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCce-----e--h--hhhhcccceEEEEEeecCC
Confidence 225566664 9999999999999999999987 6899999997654 1 1 2444599999999998 5
Q ss_pred CEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 319 SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 319 ~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
..|+|++.|+.+++||+ +-+.+..+.-. + +|.+++++|++..++.|..||.+.+-+.
T Consensus 251 ~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~-~-pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 251 TRLLSGSLDRHVKVFDTTNYKVVHSWKYP-G-PVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred ceEeecccccceEEEEccceEEEEeeecc-c-ceeeEEecCCCceEEEecccceeeeehh
Confidence 89999999999999997 66777777654 4 6999999999999999999998877644
No 69
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.6e-26 Score=213.74 Aligned_cols=291 Identities=16% Similarity=0.161 Sum_probs=217.4
Q ss_pred eeEEEEecCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEe
Q 003423 247 VNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG 325 (821)
Q Consensus 247 ~~~~~~~~h~~~I~~l~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~ 325 (821)
..+..+.||.+.|.+++=+|.. ..++||+.||.|+|||+....+ . ..+..|.+.|..+++....++++|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-----~-----~~f~AH~G~V~Gi~v~~~~~~tvg 126 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-----I-----RTFKAHEGLVRGICVTQTSFFTVG 126 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh-----h-----heeecccCceeeEEecccceEEec
Confidence 4566778999999999999976 6799999999999999998765 3 689999999999999999999999
Q ss_pred CCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeec
Q 003423 326 EDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (821)
Q Consensus 326 ~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (821)
.|.+|+.|.+++..+.++.+... +..+.-+..+..++|+|++ |.|||....
T Consensus 127 dDKtvK~wk~~~~p~~tilg~s~--~~gIdh~~~~~~FaTcGe~--i~IWD~~R~------------------------- 177 (433)
T KOG0268|consen 127 DDKTVKQWKIDGPPLHTILGKSV--YLGIDHHRKNSVFATCGEQ--IDIWDEQRD------------------------- 177 (433)
T ss_pred CCcceeeeeccCCcceeeecccc--ccccccccccccccccCce--eeecccccC-------------------------
Confidence 99999999999988888877654 7788888888899999975 899998431
Q ss_pred CCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCc
Q 003423 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDD 485 (821)
Q Consensus 406 ~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~ 485 (821)
.+++++.+--|. +.++.+.+ ....
T Consensus 178 --------------~Pv~smswG~Dt-----------------------------------i~svkfNp-------vETs 201 (433)
T KOG0268|consen 178 --------------NPVSSMSWGADS-----------------------------------ISSVKFNP-------VETS 201 (433)
T ss_pred --------------CccceeecCCCc-----------------------------------eeEEecCC-------Ccch
Confidence 122322222111 11111111 1225
Q ss_pred EEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCc
Q 003423 486 WVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSK 565 (821)
Q Consensus 486 ~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 565 (821)
.|+++..|+.|.+||+.......+.+..+ .+.. .|++|++--+++++.|-.++.||+....
T Consensus 202 ILas~~sDrsIvLyD~R~~~Pl~KVi~~m--RTN~--------IswnPeafnF~~a~ED~nlY~~DmR~l~--------- 262 (433)
T KOG0268|consen 202 ILASCASDRSIVLYDLRQASPLKKVILTM--RTNT--------ICWNPEAFNFVAANEDHNLYTYDMRNLS--------- 262 (433)
T ss_pred heeeeccCCceEEEecccCCccceeeeec--cccc--------eecCccccceeeccccccceehhhhhhc---------
Confidence 67777788889999987765544333322 1111 3556644457788999999999998753
Q ss_pred cceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccCCcceEEEEE
Q 003423 566 TNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSV 645 (821)
Q Consensus 566 ~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~ 645 (821)
..+..+ .+|...|++++|||.|+-+++||.|.+|+||...... .-....+- -.+.|.|+.|
T Consensus 263 ----~p~~v~-~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~----------SRdiYhtk----RMq~V~~Vk~ 323 (433)
T KOG0268|consen 263 ----RPLNVH-KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH----------SRDIYHTK----RMQHVFCVKY 323 (433)
T ss_pred ----ccchhh-cccceeEEEeccCCCcchhccccccceEEEeecCCCc----------chhhhhHh----hhheeeEEEE
Confidence 233344 7899999999999999999999999999999987431 11111111 1457999999
Q ss_pred EecCCCceEEEEecCCCeEEEEEeecCC
Q 003423 646 AKLRSNQTEIRSTGGDGCICYLEYDKDR 673 (821)
Q Consensus 646 ~~~~~~~~~l~t~g~Dg~i~iw~~~~~~ 673 (821)
+ .+..++++|+.||.||+|.-..++
T Consensus 324 S---~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 324 S---MDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred e---ccccEEEecCCCcceeeeecchhh
Confidence 9 778999999999999999986543
No 70
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.2e-25 Score=196.99 Aligned_cols=254 Identities=20% Similarity=0.334 Sum_probs=197.1
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC-ceeEEE
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SIILEV 173 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~-~~~~~~ 173 (821)
|.|++.|.++..+. .+.+...+. -.+.+.+++|++ ...+.+++|+.||++++||.... ..+..+
T Consensus 36 G~G~L~ile~~~~~------------gi~e~~s~d-~~D~LfdV~Wse--~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~ 100 (311)
T KOG0277|consen 36 GNGRLFILEVTDPK------------GIQECQSYD-TEDGLFDVAWSE--NHENQVIAASGDGSLRLFDLTMPSKPIHKF 100 (311)
T ss_pred cCceEEEEecCCCC------------CeEEEEeee-cccceeEeeecC--CCcceEEEEecCceEEEeccCCCCcchhHH
Confidence 56888888876221 133444443 457899999998 35678899999999999996533 345566
Q ss_pred ccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe
Q 003423 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (821)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (821)
+.|.+ .++|+.+- ..++..+++++.|++|++|+.. ....+.++.
T Consensus 101 kEH~~-EV~Svdwn--~~~r~~~ltsSWD~TiKLW~~~---------------------------------r~~Sv~Tf~ 144 (311)
T KOG0277|consen 101 KEHKR-EVYSVDWN--TVRRRIFLTSSWDGTIKLWDPN---------------------------------RPNSVQTFN 144 (311)
T ss_pred Hhhhh-heEEeccc--cccceeEEeeccCCceEeecCC---------------------------------CCcceEeec
Confidence 66655 47787653 3456778888999999999998 667788999
Q ss_pred cCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCe
Q 003423 254 GHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCT 329 (821)
Q Consensus 254 ~h~~~I~~l~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~ 329 (821)
||...|...+|+| ..+.++++|.|+++++||++.... . ..+..|...|.++.|+ ++.++||+.|+.
T Consensus 145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk-----~-----~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~ 214 (311)
T KOG0277|consen 145 GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK-----F-----MSIEAHNSEILCCDWSKYNHNVLATGGVDNL 214 (311)
T ss_pred CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc-----e-----eEEEeccceeEeecccccCCcEEEecCCCce
Confidence 9999999999999 567999999999999999987644 2 4688999999999998 689999999999
Q ss_pred EEEEcCC--CceeeEeecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecC
Q 003423 330 CRVWGSD--GKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIP 406 (821)
Q Consensus 330 i~iwd~~--~~~~~~~~~h~~~~i~~l~~~~~~-~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (821)
|+.||+. ..++..+.+|.- .|+.+.|+|.. ..|++++.|-++++||....
T Consensus 215 vr~wDir~~r~pl~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~-------------------------- 267 (311)
T KOG0277|consen 215 VRGWDIRNLRTPLFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQ-------------------------- 267 (311)
T ss_pred EEEEehhhccccceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccc--------------------------
Confidence 9999993 467888899987 79999999964 68999999999999998531
Q ss_pred CcccceeccCCCCcceEEEEeec-CCeEEEEec
Q 003423 407 NFSEQIRLTDSKSEYVRCLHLTS-EDTLYIATN 438 (821)
Q Consensus 407 ~~~~~~~~~~~~~~~i~~l~f~~-~~~~l~~~~ 438 (821)
...+...+.|++.+..+.|++ +...++.+.
T Consensus 268 --ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 268 --DSAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred --hhhhhhhhccceEEeccccccccCceeeecc
Confidence 011122345677788888887 335555553
No 71
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.3e-25 Score=208.11 Aligned_cols=282 Identities=17% Similarity=0.177 Sum_probs=207.7
Q ss_pred CccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCC
Q 003423 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS 269 (821)
Q Consensus 190 s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~ 269 (821)
+||++++++|+.||-|-+|+..++.+..- .+.+....+.-|+.+|.|+.|+.|..
T Consensus 222 SPDgqyLvsgSvDGFiEVWny~~GKlrKD-------------------------LkYQAqd~fMMmd~aVlci~FSRDsE 276 (508)
T KOG0275|consen 222 SPDGQYLVSGSVDGFIEVWNYTTGKLRKD-------------------------LKYQAQDNFMMMDDAVLCISFSRDSE 276 (508)
T ss_pred CCCCceEeeccccceeeeehhccchhhhh-------------------------hhhhhhcceeecccceEEEeecccHH
Confidence 69999999999999999999984332210 01223334556899999999999999
Q ss_pred EEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecc
Q 003423 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (821)
Q Consensus 270 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h 346 (821)
.||+|+.||.|++|.+.++.+ ++ ..-..|...|+++.|+ +..+++++.|.++++-.+ .|++++.+++|
T Consensus 277 MlAsGsqDGkIKvWri~tG~C-----lR----rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH 347 (508)
T KOG0275|consen 277 MLASGSQDGKIKVWRIETGQC-----LR----RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH 347 (508)
T ss_pred HhhccCcCCcEEEEEEecchH-----HH----HhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc
Confidence 999999999999999999877 43 2334899999999999 689999999999999999 89999999999
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC-cCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEE
Q 003423 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (821)
Q Consensus 347 ~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 425 (821)
.. .|....|.++|..+++++.||+|++|+..+ .|+.++.... .+.+|.++
T Consensus 348 sS-yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~----------------------------~d~~vnsv 398 (508)
T KOG0275|consen 348 SS-YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG----------------------------TDYPVNSV 398 (508)
T ss_pred cc-cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC----------------------------CcccceeE
Confidence 98 699999999999999999999999999954 5555543210 01112322
Q ss_pred EeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCC
Q 003423 426 HLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (821)
Q Consensus 426 ~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~ 505 (821)
-..|.+ ...++++...++++|.++.+..
T Consensus 399 ~~~PKn----------------------------------------------------peh~iVCNrsntv~imn~qGQv 426 (508)
T KOG0275|consen 399 ILLPKN----------------------------------------------------PEHFIVCNRSNTVYIMNMQGQV 426 (508)
T ss_pred EEcCCC----------------------------------------------------CceEEEEcCCCeEEEEeccceE
Confidence 222211 1334444444555555543311
Q ss_pred CCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEE
Q 003423 506 HTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMC 585 (821)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 585 (821)
+.. ++......---+..+.+|.|.++.+.+.|+.++.|.+..+ .+-..+ ..|...|..
T Consensus 427 -----Vrs--fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG--------------~LE~tl-~VhEkdvIG 484 (508)
T KOG0275|consen 427 -----VRS--FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG--------------KLERTL-PVHEKDVIG 484 (508)
T ss_pred -----Eee--eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC--------------ceeeee-ecccccccc
Confidence 111 1111111011122356788999999999999999999887 344443 567888889
Q ss_pred EEeecCCCEEEEEcCCCcEEEEe
Q 003423 586 LDASFEDEVLFCGDLRGNLVLFP 608 (821)
Q Consensus 586 l~~s~~~~~L~sgs~dG~i~iw~ 608 (821)
++-.|..++||+-+.||.+++|.
T Consensus 485 l~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 485 LTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccCcccchhhhhcccchhhhcC
Confidence 99999999999999999999994
No 72
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=7.9e-26 Score=216.93 Aligned_cols=204 Identities=19% Similarity=0.284 Sum_probs=168.9
Q ss_pred ceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc--eeEEEccCcceeEEEEeeccCCccCeEEEEEe
Q 003423 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (821)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (821)
.....+..|.+.+.++.|-+ +...|+||+.|..|++|++...+ .+.++.+... .+.++.| .+++..+++++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~---~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g-~it~~d~---d~~~~~~iAas 238 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLR---NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLG-NITSIDF---DSDNKHVIAAS 238 (459)
T ss_pred hhhhhhhccccccceeEEcc---CcchhhhcchhhhhhhhhcccchhhhhhhhhccCC-Ccceeee---cCCCceEEeec
Confidence 34566778999999999999 88899999999999999987666 3344444332 3556666 57788999999
Q ss_pred eCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 003423 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (821)
Q Consensus 201 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i 280 (821)
.|+.+++|++. +.+...+|.||++.|+++.|......+++|+.|++|
T Consensus 239 ~d~~~r~Wnvd---------------------------------~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRti 285 (459)
T KOG0288|consen 239 NDKNLRLWNVD---------------------------------SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTI 285 (459)
T ss_pred CCCceeeeecc---------------------------------chhhhhhhcccccceeeehhhccccceeeccccchh
Confidence 99999999999 778889999999999999999877779999999999
Q ss_pred EEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecC
Q 003423 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (821)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~ 359 (821)
++||+....+ .+ -.-..+.+.+|+..+..++++..|++||+||. .+.+......+. .|+++..+++
T Consensus 286 K~WDl~k~~C-----~k------t~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~ 352 (459)
T KOG0288|consen 286 KLWDLQKAYC-----SK------TVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMD 352 (459)
T ss_pred hhhhhhhhhe-----ec------cccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc--ceeeEeeccC
Confidence 9999998665 22 22223456667777788999999999999998 677777777765 3999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 003423 360 SSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 360 ~~~l~tg~~dg~I~iwd~~~ 379 (821)
+..|.+.+.|.++.+.|+++
T Consensus 353 g~~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 353 GLELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred CeEEeeecCCCceeeeeccc
Confidence 99999999999999999864
No 73
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=1.9e-25 Score=218.84 Aligned_cols=287 Identities=16% Similarity=0.187 Sum_probs=221.0
Q ss_pred eeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc-CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCC
Q 003423 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (821)
Q Consensus 55 ~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 133 (821)
+.+..+..|.. .|.++.|.|.. ..+++.+| |+.|+||++... ..+++++.+|..
T Consensus 205 k~~~~~~gH~k-gvsai~~fp~~----------~hLlLS~gmD~~vklW~vy~~--------------~~~lrtf~gH~k 259 (503)
T KOG0282|consen 205 KLSHNLSGHTK-GVSAIQWFPKK----------GHLLLSGGMDGLVKLWNVYDD--------------RRCLRTFKGHRK 259 (503)
T ss_pred hheeeccCCcc-ccchhhhccce----------eeEEEecCCCceEEEEEEecC--------------cceehhhhcchh
Confidence 34455555444 58888888642 24666655 899999999864 378999999999
Q ss_pred cEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccC
Q 003423 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (821)
Q Consensus 134 ~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~ 213 (821)
+|.+++|++ +|..+.+++.|+.|++||+++|+++.++.... +.+.+.|++.+ .+.+++|+.|+.|+.||++
T Consensus 260 ~Vrd~~~s~---~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~--~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiR-- 330 (503)
T KOG0282|consen 260 PVRDASFNN---CGTSFLSASFDRFLKLWDTETGQVLSRFHLDK--VPTCVKFHPDN--QNIFLVGGSDKKIRQWDIR-- 330 (503)
T ss_pred hhhhhhccc---cCCeeeeeecceeeeeeccccceEEEEEecCC--CceeeecCCCC--CcEEEEecCCCcEEEEecc--
Confidence 999999999 99999999999999999999999998876543 56777775432 4889999999999999999
Q ss_pred CcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCC
Q 003423 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (821)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 293 (821)
.++.++++..|-+.|..+.|-++|+++++.++|++++||+.+..-.
T Consensus 331 -------------------------------s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~--- 376 (503)
T KOG0282|consen 331 -------------------------------SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP--- 376 (503)
T ss_pred -------------------------------chHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc---
Confidence 6677888888999999999999999999999999999999988654
Q ss_pred CCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcCC----CceeeEeecccCCC-eEEEEEecCCCEEEEEeC
Q 003423 294 DSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSD----GKQLKMIKEHIGRG-IWRCLYDSLSSLLVTAGF 368 (821)
Q Consensus 294 ~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~h~~~~-i~~l~~~~~~~~l~tg~~ 368 (821)
++.+ .....|+.+...+.-.+++++.-+.|+.|.++.+. ....+.+.+|...+ -..+.|+|||.+|++|..
T Consensus 377 --ik~i--~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds 452 (503)
T KOG0282|consen 377 --IKNI--ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS 452 (503)
T ss_pred --chhh--cchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC
Confidence 3322 23344555444444446899999999999999872 23445677776422 346889999999999999
Q ss_pred CCcEEEEEcCC-cCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCC--eEEEEecCCcEE
Q 003423 369 DSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED--TLYIATNHGYLY 443 (821)
Q Consensus 369 dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~--~~l~~~~~g~~~ 443 (821)
||.+.+||.++ ..+. .+..|++.+..+.|+|.. .++.+.-+|.+.
T Consensus 453 dG~v~~wdwkt~kl~~------------------------------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ik 500 (503)
T KOG0282|consen 453 DGKVNFWDWKTTKLVS------------------------------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIK 500 (503)
T ss_pred CccEEEeechhhhhhh------------------------------ccccCCcceEEEEecCCCcceeEecccCceeE
Confidence 99999999955 2222 234456778999999954 444444455553
No 74
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=1.4e-24 Score=221.59 Aligned_cols=285 Identities=20% Similarity=0.325 Sum_probs=225.8
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCcee--EEEccCcceeEEEEeeccCCccCeEEEEE
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LEVHSPERCLLYSMKLWGDNLEALRIASG 199 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~s~~~~~~s~~~~~l~sg 199 (821)
.++.+.+.+|+..|..+++.+ +.++++++.||++++|+-..++.+ ..+..|.+.+..+.+|.. .++.++++|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~----~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e--~~~~~l~~g 77 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTD----GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE--SDKGRLVVG 77 (745)
T ss_pred ceeEEEeccCccchheeEecC----CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc--ccCcceEee
Confidence 466788999999999999874 557999999999999997666554 346678888887777754 466789999
Q ss_pred eeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCe
Q 003423 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (821)
Q Consensus 200 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~ 279 (821)
+.|..|.+|... +..++..++||+..|.+++...++. ++|||.|.+
T Consensus 78 ~~D~~i~v~~~~---------------------------------~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~T 123 (745)
T KOG0301|consen 78 GMDTTIIVFKLS---------------------------------QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDST 123 (745)
T ss_pred cccceEEEEecC---------------------------------CCCchhhhhccccceeeeecCCcCc-eEecccccc
Confidence 999999999998 7788999999999999999888776 999999999
Q ss_pred EEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEec
Q 003423 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDS 358 (821)
Q Consensus 280 i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~ 358 (821)
+++|...... ..+.+|++.||+++.- .+.++||+.|.+|++|.- ++.++++.+|.. .|+.+++-+
T Consensus 124 akvW~~~~l~------------~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~-~~~l~tf~gHtD-~VRgL~vl~ 189 (745)
T KOG0301|consen 124 AKVWRIGELV------------YSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG-GTLLKTFSGHTD-CVRGLAVLD 189 (745)
T ss_pred eEEecchhhh------------cccCCcchheeeeeecCCCcEEeccCcceeeeccC-Cchhhhhccchh-heeeeEEec
Confidence 9999887643 3799999999999877 579999999999999996 889999999999 699999987
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEec
Q 003423 359 LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (821)
Q Consensus 359 ~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~ 438 (821)
+ ..+++++.||.|++|++++.++.++.+ |...+.+++...++..++++.
T Consensus 190 ~-~~flScsNDg~Ir~w~~~ge~l~~~~g------------------------------htn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 190 D-SHFLSCSNDGSIRLWDLDGEVLLEMHG------------------------------HTNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred C-CCeEeecCCceEEEEeccCceeeeeec------------------------------cceEEEEEEecCCCCeEEEec
Confidence 5 458899999999999998766555544 456788888555555556553
Q ss_pred CCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCC
Q 003423 439 HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (821)
Q Consensus 439 ~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~ 505 (821)
+...+++|.... ..+..+.+ ...+.+.....+ .-+++|+.||.||||..+..+
T Consensus 239 --EDrtlriW~~~e--~~q~I~lP-ttsiWsa~~L~N---------gDIvvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 239 --EDRTLRIWKKDE--CVQVITLP-TTSIWSAKVLLN---------GDIVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred --CCceEEEeecCc--eEEEEecC-ccceEEEEEeeC---------CCEEEeccCceEEEEEecccc
Confidence 333345776542 22333333 345555555443 467899999999999977543
No 75
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=7.3e-25 Score=215.77 Aligned_cols=298 Identities=17% Similarity=0.202 Sum_probs=216.3
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCC----eeeeEEEeeccccEEeEEeccccCCCCCCccceeeE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~----~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 90 (821)
|...|++|++. |. +..+++|+ |-+|+.||++.- +-.+.++-.+...|..+++++.+ +.+
T Consensus 166 gtk~Vsal~~D--p~----GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg----------~~i 229 (641)
T KOG0772|consen 166 GTKIVSALAVD--PS----GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG----------DQI 229 (641)
T ss_pred CceEEEEeeec--CC----CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC----------CeE
Confidence 56779999999 88 55666666 999999999742 22344444455678889999764 479
Q ss_pred EEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCcee
Q 003423 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (821)
Q Consensus 91 l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~ 170 (821)
|+++|..+.+|+|.+-... ......|. =+.-+..-+||...++|.+|+|. +...++|++.||++||||+.+.+.-
T Consensus 230 Lvvsg~aqakl~DRdG~~~-~e~~KGDQ--YI~Dm~nTKGHia~lt~g~whP~--~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEI-VEFSKGDQ--YIRDMYNTKGHIAELTCGCWHPD--NKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred EEEecCcceeEEccCCcee-eeeeccch--hhhhhhccCCceeeeeccccccC--cccceEEecCCCcEEEEecCCchhh
Confidence 9999999999999762210 00000000 02234566899999999999993 5568999999999999999875432
Q ss_pred -EEE----ccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccc
Q 003423 171 -LEV----HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (821)
Q Consensus 171 -~~~----~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (821)
+.+ ....+..+.+++| ++++.+||+|..||.|.+|+... ...
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~---nrdg~~iAagc~DGSIQ~W~~~~------------------------------~~v 351 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAW---NRDGKLIAAGCLDGSIQIWDKGS------------------------------RTV 351 (641)
T ss_pred eeEEeeccCCCcccCceeeec---CCCcchhhhcccCCceeeeecCC------------------------------ccc
Confidence 222 2334445666666 78999999999999999999761 012
Q ss_pred eeeEEEEecCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEec--cceeEEEEEEcC--C
Q 003423 246 AVNLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG--HNARVWDCCLTD--S 319 (821)
Q Consensus 246 ~~~~~~~~~h~~--~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~v~~~~--~ 319 (821)
......-.+|.. .|+||.||+||++|+|-+.|.++++||++..+. . + ....+ ..-+-+.++|+| .
T Consensus 352 ~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk-----p--L--~~~tgL~t~~~~tdc~FSPd~k 422 (641)
T KOG0772|consen 352 RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK-----P--L--NVRTGLPTPFPGTDCCFSPDDK 422 (641)
T ss_pred ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc-----c--h--hhhcCCCccCCCCccccCCCce
Confidence 233444568988 899999999999999999999999999998654 1 1 12222 223346789994 5
Q ss_pred EEEEEe------CCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 320 FIITAG------EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 320 ~l~s~~------~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
+|+||. ..|++.++|. +-..+.++.-... .|..+.|+|.-+.|..|+.||.+++|=-
T Consensus 423 li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a-Svv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 423 LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA-SVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred EEEecccccCCCCCceEEEEeccceeeEEEecCCCc-eEEEEeecchhhheeeecCCCceEEEEC
Confidence 677764 4478999997 6667777766655 6889999999999999999999998743
No 76
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.5e-25 Score=222.31 Aligned_cols=271 Identities=17% Similarity=0.270 Sum_probs=211.7
Q ss_pred cceEEeec-CCeEEEEECCCCe------eeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeec
Q 003423 35 LPFLLAGS-GSQVLLYDLEAGT------LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFE 107 (821)
Q Consensus 35 ~~~l~~g~-~~~i~iwd~~t~~------~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~ 107 (821)
++||++|. ||.|++|+..... .+.+++.|.. -|..|..... + ..++.++.|-+|++|+....
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsD-WVNDiiL~~~-------~---~tlIS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSD-WVNDIILCGN-------G---KTLISASSDTTVKVWNAHKD 105 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHh-HHhhHHhhcC-------C---CceEEecCCceEEEeecccC
Confidence 56666655 9999999987432 2455555444 4555554422 2 25888899999999998854
Q ss_pred CCCCCCCCCccccccceeeeccCCCCcEEEEEE-eecCCCCCEEEEEECCCcEEEEEccCCce--eEE--------EccC
Q 003423 108 LSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF-LKVCNGNRSLAIGCSDNSIRVWDISNSSI--ILE--------VHSP 176 (821)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~-~~~~~~~~~l~t~~~d~~i~iwd~~~~~~--~~~--------~~~~ 176 (821)
. --...++..|.+-|.|+++ -+ +..++|+|+-|+.|.+||+.++.. +.+ +...
T Consensus 106 ~-------------~~c~stir~H~DYVkcla~~ak---~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG 169 (735)
T KOG0308|consen 106 N-------------TFCMSTIRTHKDYVKCLAYIAK---NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG 169 (735)
T ss_pred c-------------chhHhhhhcccchheeeeeccc---CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence 2 1346778899999999999 55 888999999999999999998732 222 2224
Q ss_pred cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCC
Q 003423 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (821)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 256 (821)
.+..+||++. ++.+..+++|+..+.|++||++ ..+.+..++||+
T Consensus 170 ~k~siYSLA~---N~t~t~ivsGgtek~lr~wDpr---------------------------------t~~kimkLrGHT 213 (735)
T KOG0308|consen 170 PKDSIYSLAM---NQTGTIIVSGGTEKDLRLWDPR---------------------------------TCKKIMKLRGHT 213 (735)
T ss_pred Cccceeeeec---CCcceEEEecCcccceEEeccc---------------------------------cccceeeeeccc
Confidence 4556899877 5677899999999999999999 677788889999
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEEeCCCeEEEEc
Q 003423 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWG 334 (821)
Q Consensus 257 ~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~~~dg~i~iwd 334 (821)
..|.++..++||+.++|+|.||+|++||+..+++ + .++..|...||++..++ ..+++|+.||.|..=|
T Consensus 214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC-----l-----~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC-----L-----ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred cceEEEEEcCCCCeEeecCCCceEEeeeccccce-----e-----eeEEeccCceEEEeeCCCcceEEecCCCCcEEecc
Confidence 9999999999999999999999999999998766 4 68899999999999885 7899999999999999
Q ss_pred CCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 335 SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 335 ~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
+......++-.....+|..+..+...+-+-++..|+.|+-|...
T Consensus 284 l~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 284 LRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred cCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 84422333322233368888887666666888899999999774
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=5.3e-24 Score=227.90 Aligned_cols=260 Identities=22% Similarity=0.355 Sum_probs=214.2
Q ss_pred eEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc
Q 003423 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 89 ~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
..+....++.+++|+..... .....+.||.+.|.++++.. .+..|++|+.|.++++||..+|+
T Consensus 220 ~~~~~s~~~tl~~~~~~~~~--------------~i~~~l~GH~g~V~~l~~~~---~~~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLNNGY--------------LILTRLVGHFGGVWGLAFPS---GGDKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred eEEecCCCceeEEeecccce--------------EEEeeccCCCCCceeEEEec---CCCEEEEEecCCcEEeEecCCCc
Confidence 46666778999999988542 33444999999999999987 78999999999999999999999
Q ss_pred eeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceee
Q 003423 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (821)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (821)
+...+.+|... +..+. ....++++|+.|.+|++|++. .+..
T Consensus 283 C~~~l~gh~st-v~~~~-----~~~~~~~sgs~D~tVkVW~v~---------------------------------n~~~ 323 (537)
T KOG0274|consen 283 CTHSLQGHTSS-VRCLT-----IDPFLLVSGSRDNTVKVWDVT---------------------------------NGAC 323 (537)
T ss_pred EEEEecCCCce-EEEEE-----ccCceEeeccCCceEEEEecc---------------------------------Ccce
Confidence 99999977653 44444 366788999999999999999 7788
Q ss_pred EEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC-CEEEEEeCC
Q 003423 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGED 327 (821)
Q Consensus 249 ~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~l~s~~~d 327 (821)
+..+.||.++|.++..+ +.++++|+.|++|++||+.+++. + ..+.+|..+|+++.+.+ +.+++|+.|
T Consensus 324 l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c-----l-----~sl~gH~~~V~sl~~~~~~~~~Sgs~D 391 (537)
T KOG0274|consen 324 LNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC-----L-----KSLSGHTGRVYSLIVDSENRLLSGSLD 391 (537)
T ss_pred EEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhcee-----e-----eeecCCcceEEEEEecCcceEEeeeec
Confidence 99999999999999997 78999999999999999998665 4 68999999999999998 999999999
Q ss_pred CeEEEEcC-CC-ceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC-cCCCcccCCccccccCCCcceEEee
Q 003423 328 CTCRVWGS-DG-KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIK 404 (821)
Q Consensus 328 g~i~iwd~-~~-~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (821)
++|++||+ .. +++.++.+|.. -+..+.+ .+++|++++.|+.|++||... .+++++++.
T Consensus 392 ~~IkvWdl~~~~~c~~tl~~h~~-~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~---------------- 452 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQGHTS-LVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR---------------- 452 (537)
T ss_pred cceEeecCCchhhhhhhhcCCcc-ccccccc--ccceeEeccccccEEEeecccCceeeeeccC----------------
Confidence 99999999 45 69999999988 4655544 578999999999999999844 444444331
Q ss_pred cCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecC
Q 003423 405 IPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD 449 (821)
Q Consensus 405 ~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~ 449 (821)
+...|..+++. +..+++++.+|.+..+++..
T Consensus 453 -------------~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 453 -------------HVGGVSALALG-KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred -------------CcccEEEeecC-cceEEEEecCCeeEEEeccc
Confidence 22446777766 56788888888887554433
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1e-24 Score=229.14 Aligned_cols=314 Identities=16% Similarity=0.204 Sum_probs=201.6
Q ss_pred ceeeecc-CCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee
Q 003423 123 SLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (821)
Q Consensus 123 ~~~~~~~-~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (821)
...+.+. .|.+.|+++.|++ +|+|||+|+.|+.|+||.+...+....-.....++...+. ..+..-.+...
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~---DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~-----~~s~~~p~~s~ 328 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSH---DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYN-----ANSQIEPSTSS 328 (712)
T ss_pred EEeeccccccCCcEEEEEeCC---CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhh-----hccccCccccc
Confidence 4455666 8999999999999 9999999999999999998765442111111111111110 00100000000
Q ss_pred CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeec--ccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCe
Q 003423 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ--DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (821)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~ 279 (821)
.+.+.=-... ....... .++.+. ......++++.+.||.+.|..|.|+.+ ++|+|+|.|+|
T Consensus 329 ~~~~~~~~s~---~~~~~~s-------------~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKT 391 (712)
T KOG0283|consen 329 EEKISSRTSS---SRKGSQS-------------PCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKT 391 (712)
T ss_pred cccccccccc---cccccCC-------------ccccCCCccccccccchhhhhccchhheecccccC-CeeEecccccc
Confidence 0000000000 0000000 000000 011245788899999999999999975 59999999999
Q ss_pred EEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEE
Q 003423 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLY 356 (821)
Q Consensus 280 i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~ 356 (821)
||+|++....+ ...+.|..-|+|++|+ ++++++|+.||.||||++..+.+.-...-.. -|++++|
T Consensus 392 VRLWh~~~~~C-----------L~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~-lITAvcy 459 (712)
T KOG0283|consen 392 VRLWHPGRKEC-----------LKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD-LITAVCY 459 (712)
T ss_pred EEeecCCCcce-----------eeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhh-hheeEEe
Confidence 99999998776 5888999999999999 4899999999999999995555555554445 5999999
Q ss_pred ecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCC--eEE
Q 003423 357 DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED--TLY 434 (821)
Q Consensus 357 ~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~--~~l 434 (821)
.|+|+..+.|+.+|.+++|+..+..++.- +.+...+. .......|+.+.|.|.. .+|
T Consensus 460 ~PdGk~avIGt~~G~C~fY~t~~lk~~~~---------------~~I~~~~~------Kk~~~~rITG~Q~~p~~~~~vL 518 (712)
T KOG0283|consen 460 SPDGKGAVIGTFNGYCRFYDTEGLKLVSD---------------FHIRLHNK------KKKQGKRITGLQFFPGDPDEVL 518 (712)
T ss_pred ccCCceEEEEEeccEEEEEEccCCeEEEe---------------eeEeeccC------ccccCceeeeeEecCCCCCeEE
Confidence 99999999999999999999965322210 01111110 01112369999999744 599
Q ss_pred EEecCCcEEEEEecCCCcceeeEeeeccCC-cceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCC
Q 003423 435 IATNHGYLYHTKLCDMDSVNWNKILQVSEG-MPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (821)
Q Consensus 435 ~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~ 505 (821)
+++++.++..++. .+......+.+... ..-....+. .+++++++++.|..|++|+++...
T Consensus 519 VTSnDSrIRI~d~---~~~~lv~KfKG~~n~~SQ~~Asfs--------~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 519 VTSNDSRIRIYDG---RDKDLVHKFKGFRNTSSQISASFS--------SDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred EecCCCceEEEec---cchhhhhhhcccccCCcceeeeEc--------cCCCEEEEeecCceEEEEeCCCCc
Confidence 9999999865444 22221112222211 111111221 377999999999999999986543
No 79
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.7e-25 Score=207.37 Aligned_cols=250 Identities=14% Similarity=0.263 Sum_probs=208.3
Q ss_pred eeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc
Q 003423 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (821)
Q Consensus 17 ~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g 95 (821)
.+.+.|..|| || +.||++|+ ||.|.|||..+|++..-++. +.
T Consensus 213 KSh~EcA~FS--PD----gqyLvsgSvDGFiEVWny~~GKlrKDLkY-QA------------------------------ 255 (508)
T KOG0275|consen 213 KSHVECARFS--PD----GQYLVSGSVDGFIEVWNYTTGKLRKDLKY-QA------------------------------ 255 (508)
T ss_pred ccchhheeeC--CC----CceEeeccccceeeeehhccchhhhhhhh-hh------------------------------
Confidence 3557899999 99 78999988 99999999999987654442 11
Q ss_pred CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEcc
Q 003423 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (821)
Q Consensus 96 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~ 175 (821)
...+--++++|.|+.|+. |...||+|+.||.|++|.+.+|.+++++..
T Consensus 256 -----------------------------qd~fMMmd~aVlci~FSR---DsEMlAsGsqDGkIKvWri~tG~ClRrFdr 303 (508)
T KOG0275|consen 256 -----------------------------QDNFMMMDDAVLCISFSR---DSEMLASGSQDGKIKVWRIETGQCLRRFDR 303 (508)
T ss_pred -----------------------------hcceeecccceEEEeecc---cHHHhhccCcCCcEEEEEEecchHHHHhhh
Confidence 011224668899999999 999999999999999999999999999986
Q ss_pred CcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecC
Q 003423 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (821)
Q Consensus 176 ~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 255 (821)
.+...+.++.| +.|+..+.+++.|..+++.-+. +++++..++||
T Consensus 304 AHtkGvt~l~F---SrD~SqiLS~sfD~tvRiHGlK---------------------------------SGK~LKEfrGH 347 (508)
T KOG0275|consen 304 AHTKGVTCLSF---SRDNSQILSASFDQTVRIHGLK---------------------------------SGKCLKEFRGH 347 (508)
T ss_pred hhccCeeEEEE---ccCcchhhcccccceEEEeccc---------------------------------cchhHHHhcCc
Confidence 55556777777 6889999999999999999988 78899999999
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEE
Q 003423 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRV 332 (821)
Q Consensus 256 ~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~i 332 (821)
..-|+...|.+||..+++++.||+|++|+..+.++ ... ....+...+|.++..- +..++.+...+++.+
T Consensus 348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC-----~~T---fk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~i 419 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTEC-----LST---FKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYI 419 (508)
T ss_pred cccccceEEcCCCCeEEEecCCccEEEecCcchhh-----hhh---ccCCCCcccceeEEEcCCCCceEEEEcCCCeEEE
Confidence 99999999999999999999999999999998766 322 2334456677777665 689999999999999
Q ss_pred EcCCCceeeEeecccC--CCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 333 WGSDGKQLKMIKEHIG--RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 333 wd~~~~~~~~~~~h~~--~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
-++.|+.++++..... ....+..++|.|.++++.++|+.+..+....
T Consensus 420 mn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s 468 (508)
T KOG0275|consen 420 MNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS 468 (508)
T ss_pred EeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeec
Confidence 9999999999865332 1356778899999999999999999998843
No 80
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=6e-25 Score=196.76 Aligned_cols=279 Identities=19% Similarity=0.249 Sum_probs=217.7
Q ss_pred eeeeeEEEEEecc-CCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE
Q 003423 16 YLGEISALCFVHL-PSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (821)
Q Consensus 16 ~~~~Vt~l~~~~~-p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (821)
|..||..|+||.+ |+ +.+|++++ |+.=.+=+-+||.-+.++..|++ .|.+.....+. .+...+
T Consensus 13 htrpvvdl~~s~itp~----g~flisa~kd~~pmlr~g~tgdwigtfeghkg-avw~~~l~~na----------~~aasa 77 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPD----GYFLISASKDGKPMLRNGDTGDWIGTFEGHKG-AVWSATLNKNA----------TRAASA 77 (334)
T ss_pred CCcceeEEeccCCCCC----ceEEEEeccCCCchhccCCCCCcEEeeeccCc-ceeeeecCchh----------hhhhhh
Confidence 7889999999932 34 66666665 77777778889999999999887 58777766442 122333
Q ss_pred EcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc-eeEE
Q 003423 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILE 172 (821)
Q Consensus 94 ~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~-~~~~ 172 (821)
+.|-+.++||.-+++ .++.+ .|+.-|.+++|+. |.++|+||+.+..+||+|++..+ ...+
T Consensus 78 aadftakvw~a~tgd---------------elhsf-~hkhivk~~af~~---ds~~lltgg~ekllrvfdln~p~App~E 138 (334)
T KOG0278|consen 78 AADFTAKVWDAVTGD---------------ELHSF-EHKHIVKAVAFSQ---DSNYLLTGGQEKLLRVFDLNRPKAPPKE 138 (334)
T ss_pred cccchhhhhhhhhhh---------------hhhhh-hhhheeeeEEecc---cchhhhccchHHHhhhhhccCCCCCchh
Confidence 458899999977653 45555 4889999999999 99999999999999999998654 3556
Q ss_pred EccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE
Q 003423 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (821)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (821)
+.++.+.+-..+-. ...+.+++.+.|+.|++||.+ ++..++++
T Consensus 139 ~~ghtg~Ir~v~wc----~eD~~iLSSadd~tVRLWD~r---------------------------------Tgt~v~sL 181 (334)
T KOG0278|consen 139 ISGHTGGIRTVLWC----HEDKCILSSADDKTVRLWDHR---------------------------------TGTEVQSL 181 (334)
T ss_pred hcCCCCcceeEEEe----ccCceEEeeccCCceEEEEec---------------------------------cCcEEEEE
Confidence 66665544322222 356678888999999999999 66677776
Q ss_pred ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEEeCCCeE
Q 003423 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTC 330 (821)
Q Consensus 253 ~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~~~dg~i 330 (821)
. -..+|+++..+++|++|.++ .-+.|++||...-.. + .-..-...|.+...+| ..+++|++|..+
T Consensus 182 ~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~-----l------Ks~k~P~nV~SASL~P~k~~fVaGged~~~ 248 (334)
T KOG0278|consen 182 E-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGL-----L------KSYKMPCNVESASLHPKKEFFVAGGEDFKV 248 (334)
T ss_pred e-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccc-----e------eeccCccccccccccCCCceEEecCcceEE
Confidence 5 56789999999999877665 448899999988665 3 2333345577777764 789999999999
Q ss_pred EEEcC-CCceeeEe-ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 331 RVWGS-DGKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 331 ~iwd~-~~~~~~~~-~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
+.||+ +|..+..+ ++|.+ +|.|+.|+|+|...++|+.||+|++|.+..
T Consensus 249 ~kfDy~TgeEi~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 249 YKFDYNTGEEIGSYNKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred EEEeccCCceeeecccCCCC-ceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 99999 78888886 88998 799999999999999999999999999843
No 81
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-22 Score=188.91 Aligned_cols=276 Identities=17% Similarity=0.274 Sum_probs=198.9
Q ss_pred EEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEE
Q 003423 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (821)
Q Consensus 195 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~ 274 (821)
.|++|+....|.-+++. +..+. .. . ..+....+++.+.+|.++|++++. ++.++|||
T Consensus 3 ~iIvGtYE~~i~Gf~l~-----~~~~~-~~-------~--------s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSG 59 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLD-----PEPKG-CT-------D--------SVKPTLKPLFAFSAHAGSITALAV--SGPYVASG 59 (362)
T ss_pred eEEEeeeeeEEEEEEec-----cCccc-cc-------c--------ccceeeeccccccccccceeEEEe--cceeEecc
Confidence 47788888888888776 11100 00 0 001144668888999999999999 58899999
Q ss_pred eCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC----CEEEEEeCCCeEEEEcC-CCceeeEeecccCC
Q 003423 275 SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD----SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR 349 (821)
Q Consensus 275 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~----~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~ 349 (821)
|.|-+|+|||++.... . ..+..|.+.|+++.|.+ +.|++|++||.|.+|+. ...++.+++.|.++
T Consensus 60 ssDetI~IYDm~k~~q-----l-----g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~ 129 (362)
T KOG0294|consen 60 SSDETIHIYDMRKRKQ-----L-----GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ 129 (362)
T ss_pred CCCCcEEEEeccchhh-----h-----cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc
Confidence 9999999999998765 3 57888999999999983 38999999999999999 78999999999995
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEEc-CCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEee
Q 003423 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428 (821)
Q Consensus 350 ~i~~l~~~~~~~~l~tg~~dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~ 428 (821)
|+.++++|.+++-++.|.|+.+++||+ +++.. .+..+ ....+.+.|+
T Consensus 130 -Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a----------------~v~~L---------------~~~at~v~w~ 177 (362)
T KOG0294|consen 130 -VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA----------------FVLNL---------------KNKATLVSWS 177 (362)
T ss_pred -cceeEecCCCceEEEEcCCceeeeehhhcCccc----------------eeecc---------------CCcceeeEEc
Confidence 999999999999999999999999999 33211 11111 1224558899
Q ss_pred cCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCC
Q 003423 429 SEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP 508 (821)
Q Consensus 429 ~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~ 508 (821)
|+|..++......+..+.+.+..- +.. ......+.|..+ .++..+++|..++.|.+||-++...
T Consensus 178 ~~Gd~F~v~~~~~i~i~q~d~A~v--~~~---i~~~~r~l~~~~---------l~~~~L~vG~d~~~i~~~D~ds~~~-- 241 (362)
T KOG0294|consen 178 PQGDHFVVSGRNKIDIYQLDNASV--FRE---IENPKRILCATF---------LDGSELLVGGDNEWISLKDTDSDTP-- 241 (362)
T ss_pred CCCCEEEEEeccEEEEEecccHhH--hhh---hhccccceeeee---------cCCceEEEecCCceEEEeccCCCcc--
Confidence 999866666555554333322111 111 111233455444 2457999999999999999776332
Q ss_pred cceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCC
Q 003423 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPF 556 (821)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 556 (821)
...+ ..++.++-.+.....|++.||+++++||.|++||++...
T Consensus 242 --~~~~---~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 242 --LTEF---LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred --ceee---ecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 1111 123344555565667888999999999999999998763
No 82
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=4.6e-23 Score=186.77 Aligned_cols=280 Identities=15% Similarity=0.183 Sum_probs=219.4
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|..|+|-++++ .+ ++||.++. |....||-.-+|+.+.++..|.+ .|.++.+.-+ + ..++..+
T Consensus 9 HERplTqiKyN--~e----GDLlFscaKD~~~~vw~s~nGerlGty~GHtG-avW~~Did~~-------s---~~liTGS 71 (327)
T KOG0643|consen 9 HERPLTQIKYN--RE----GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTG-AVWCCDIDWD-------S---KHLITGS 71 (327)
T ss_pred CccccceEEec--CC----CcEEEEecCCCCceEEEecCCceeeeecCCCc-eEEEEEecCC-------c---ceeeecc
Confidence 78899999999 77 67888876 99999999999999999999887 6999988733 1 3677778
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC-----CCcEEEEEccC---
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-----DNSIRVWDISN--- 166 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~-----d~~i~iwd~~~--- 166 (821)
+|++++|||++.+. .+..++ ...+|..+.|++ +|++++.+.. .+.|.++|++.
T Consensus 72 AD~t~kLWDv~tGk---------------~la~~k-~~~~Vk~~~F~~---~gn~~l~~tD~~mg~~~~v~~fdi~~~~~ 132 (327)
T KOG0643|consen 72 ADQTAKLWDVETGK---------------QLATWK-TNSPVKRVDFSF---GGNLILASTDKQMGYTCFVSVFDIRDDSS 132 (327)
T ss_pred ccceeEEEEcCCCc---------------EEEEee-cCCeeEEEeecc---CCcEEEEEehhhcCcceEEEEEEccCChh
Confidence 89999999999763 444443 557899999999 9988776654 46799999983
Q ss_pred ----CceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccc
Q 003423 167 ----SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (821)
Q Consensus 167 ----~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (821)
.++...+..+...+ .++-+ ++-+..|++|..||.|.+||..+
T Consensus 133 ~~~s~ep~~kI~t~~ski-t~a~W---g~l~~~ii~Ghe~G~is~~da~~------------------------------ 178 (327)
T KOG0643|consen 133 DIDSEEPYLKIPTPDSKI-TSALW---GPLGETIIAGHEDGSISIYDART------------------------------ 178 (327)
T ss_pred hhcccCceEEecCCccce-eeeee---cccCCEEEEecCCCcEEEEEccc------------------------------
Confidence 34566777776443 23322 47789999999999999999981
Q ss_pred ccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CE
Q 003423 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SF 320 (821)
Q Consensus 243 ~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~ 320 (821)
..+.+...+.|...|+.+.++||..+++|+|.|.+-++||..+-.. ...+....+|++.+++| +.
T Consensus 179 --g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v-----------~Kty~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 179 --GKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV-----------LKTYTTERPVNTAAISPLLDH 245 (327)
T ss_pred --CceeeechhhhccccccccccCCcceEEecccCccceeeeccceee-----------EEEeeecccccceecccccce
Confidence 2355556678999999999999999999999999999999998655 34455577899999885 45
Q ss_pred EEEEe-CCCe-------------EEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 321 IITAG-EDCT-------------CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 321 l~s~~-~dg~-------------i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
++.+| .+.. -+.+++ -.+++..+++|-+ +|.+++|+|+|+..++||+||.|++.-.+.
T Consensus 246 VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 246 VILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred EEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECCCCcccccCCCCceEEEEEecc
Confidence 54444 3321 112222 1246778899999 799999999999999999999999987743
No 83
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=1.5e-23 Score=226.03 Aligned_cols=330 Identities=19% Similarity=0.300 Sum_probs=223.7
Q ss_pred cCcceeEEEEeeccCCccCeEEEEEe--eCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASGT--IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (821)
.|....++++.. +|++..+|+|+ .||.++||+.. +..+.. ...+. .-.+++.+.
T Consensus 10 ~H~~~~IfSIdv---~pdg~~~aTgGq~~d~~~~iW~~~-----~vl~~~---------------~~~~~-~l~k~l~~m 65 (942)
T KOG0973|consen 10 NHNEKSIFSIDV---HPDGVKFATGGQVLDGGIVIWSQD-----PVLDEK---------------EEKNE-NLPKHLCTM 65 (942)
T ss_pred ccCCeeEEEEEe---cCCceeEecCCccccccceeeccc-----cccchh---------------hhhhc-ccchhheee
Confidence 455555888887 58999999999 89999999987 111000 00000 024567778
Q ss_pred ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCc----ccC---CC---CceeeeceEEeccceeEEEEEEc--CCE
Q 003423 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY----WKD---SD---SIEEVGSSVLYGHNARVWDCCLT--DSF 320 (821)
Q Consensus 253 ~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~----~~~---~~---~~~~~~~~~~~~h~~~i~~v~~~--~~~ 320 (821)
..|.+.|+|+.|+|||++||+||+|+.|.||...... ... .. .-+++ ..+.+|.+.|.+++|+ +.+
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~--~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV--SILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEE--EEEecCCCccceeccCCCccE
Confidence 8999999999999999999999999999999987410 000 00 11222 6889999999999999 689
Q ss_pred EEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC-cCCCcccCCccccccCCCc
Q 003423 321 IITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRT 398 (821)
Q Consensus 321 l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~ 398 (821)
+++++.|++|.+|+. ..+.+..+.+|.+ .|-.+.|+|-|+++|+-+.|++|++|+... .....+.++-.
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl~~H~s-~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~-------- 214 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVLRGHQS-LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE-------- 214 (942)
T ss_pred EEEecccceEEEEccccceeeeeeecccc-cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh--------
Confidence 999999999999999 7889999999999 699999999999999999999999999643 22222211100
Q ss_pred ceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEec--CCcEEEEEecCCCcceeeE-eeeccCCcceEEEeccCC
Q 003423 399 EIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN--HGYLYHTKLCDMDSVNWNK-ILQVSEGMPIICMDLLSN 475 (821)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~--~g~~~~~~i~~~~~~~~~~-~~~~~~~~~i~~~~~~~~ 475 (821)
.......+..+.|+|||.++++.+ ++....+.+.+..+ |.. ..-..+..++.++.+.+.
T Consensus 215 ----------------~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t--Wk~~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 215 ----------------ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT--WKVDKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred ----------------hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC--ceeeeeeecCCCceEEEEeChH
Confidence 001134588999999999998764 23333333433322 321 111122335555554332
Q ss_pred CCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCC
Q 003423 476 EPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (821)
Q Consensus 476 ~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 555 (821)
- |.-+.. .......... -..+|+|+.|+.|-||.....
T Consensus 277 l----------------------fe~~~~----------ng~~~~~~~~----------y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 277 L----------------------FERNNK----------NGTSTQPNCY----------YCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred H----------------------hccccc----------cCCccCCCcc----------eEEEEEecCCccEEEEecCCC
Confidence 1 110000 0000000000 035789999999999987544
Q ss_pred CCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCccc
Q 003423 556 FSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDL 613 (821)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~ 613 (821)
. ++... ..-....|.+++|+|||..|..+|.||+|.++.+++..
T Consensus 315 R-------------Pl~vi-~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 315 R-------------PLFVI-HNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred C-------------chhhh-hhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 2 11111 23457789999999999999999999999999987653
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.5e-23 Score=206.05 Aligned_cols=290 Identities=20% Similarity=0.274 Sum_probs=219.4
Q ss_pred CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccc
Q 003423 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLS 123 (821)
Q Consensus 44 ~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~ 123 (821)
+..+-|+-.+.-++.. +...|..++|+|.. | .-+++.+.-.+.||+.... .
T Consensus 9 ~e~~~w~~~~~~~~~k----e~~~vssl~fsp~~----P------~d~aVt~S~rvqly~~~~~---------------~ 59 (487)
T KOG0310|consen 9 PEIRYWRQETFPPVHK----EHNSVSSLCFSPKH----P------YDFAVTSSVRVQLYSSVTR---------------S 59 (487)
T ss_pred ccchhhhhhccccccc----ccCcceeEecCCCC----C------CceEEecccEEEEEecchh---------------h
Confidence 4556666554333321 23479999999875 3 4788888999999998753 3
Q ss_pred eeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCC
Q 003423 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (821)
Q Consensus 124 ~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (821)
..+.+...++.+++++|-. ||++||+|...|.|+|+|+.+...++.+..|... +....|. ..++..+++|+.|+
T Consensus 60 ~~k~~srFk~~v~s~~fR~---DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~ap-v~~~~f~--~~d~t~l~s~sDd~ 133 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRS---DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAP-VHVTKFS--PQDNTMLVSGSDDK 133 (487)
T ss_pred hhhhHHhhccceeEEEeec---CCeEEEccCCcCcEEEeccccHHHHHHHhhccCc-eeEEEec--ccCCeEEEecCCCc
Confidence 4455667779999999999 9999999999999999997776566666655543 3444443 24678889999999
Q ss_pred EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCC-CEEEEEeCCCeEEE
Q 003423 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARI 282 (821)
Q Consensus 204 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~~l~s~s~Dg~i~i 282 (821)
.+++||+. +......+.+|++.|.|.+|+|-. ..++|||.||+||+
T Consensus 134 v~k~~d~s---------------------------------~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 134 VVKYWDLS---------------------------------TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred eEEEEEcC---------------------------------CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence 99999998 444567889999999999999954 58999999999999
Q ss_pred EecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEEeCCCeEEEEcCC-C-ceeeEeecccCCCeEEEEEec
Q 003423 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGSD-G-KQLKMIKEHIGRGIWRCLYDS 358 (821)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~~~dg~i~iwd~~-~-~~~~~~~~h~~~~i~~l~~~~ 358 (821)
||++.... . .....|..+|-.+.+-+ ..+++++ ...+++||+. | +.+..+..|.. .|+|+++..
T Consensus 181 ~DtR~~~~-----~-----v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~K-tVTcL~l~s 248 (487)
T KOG0310|consen 181 WDTRSLTS-----R-----VVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNK-TVTCLRLAS 248 (487)
T ss_pred EEeccCCc-----e-----eEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccc-eEEEEEeec
Confidence 99998632 1 46678999999999973 5777766 5689999993 4 45555555776 799999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCC-eEEEEe
Q 003423 359 LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIAT 437 (821)
Q Consensus 359 ~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~-~~l~~~ 437 (821)
++..|++|+-|+.+++||+..- .-+..... .++|-+++.+|++ .++++.
T Consensus 249 ~~~rLlS~sLD~~VKVfd~t~~-----------------Kvv~s~~~-------------~~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 249 DSTRLLSGSLDRHVKVFDTTNY-----------------KVVHSWKY-------------PGPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred CCceEeecccccceEEEEccce-----------------EEEEeeec-------------ccceeeEEecCCCceEEEec
Confidence 9999999999999999997431 11112221 2458999999976 455566
Q ss_pred cCCcEE
Q 003423 438 NHGYLY 443 (821)
Q Consensus 438 ~~g~~~ 443 (821)
++|-+.
T Consensus 299 snGlv~ 304 (487)
T KOG0310|consen 299 SNGLVS 304 (487)
T ss_pred ccceee
Confidence 666654
No 85
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=3.1e-23 Score=191.39 Aligned_cols=271 Identities=20% Similarity=0.210 Sum_probs=206.1
Q ss_pred eeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCC-CeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 17 ~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t-~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
...|.+|+|| |. ...+++||+ |++|++|+++. |..+.........+|.+++|+.++ ...++..
T Consensus 27 ~DsIS~l~FS--P~---~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg----------skVf~g~ 91 (347)
T KOG0647|consen 27 EDSISALAFS--PQ---ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG----------SKVFSGG 91 (347)
T ss_pred ccchheeEec--cc---cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC----------ceEEeec
Confidence 3569999999 84 356777888 99999999986 666665555566699999999553 2466677
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
.|+++++|||..+. ...+..|.++|.++.|-+. .....|+||+-|.+|+.||.+....+.++.
T Consensus 92 ~Dk~~k~wDL~S~Q----------------~~~v~~Hd~pvkt~~wv~~-~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~ 154 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQ----------------VSQVAAHDAPVKTCHWVPG-MNYQCLVTGSWDKTLKFWDTRSSNPVATLQ 154 (347)
T ss_pred cCCceEEEEccCCC----------------eeeeeecccceeEEEEecC-CCcceeEecccccceeecccCCCCeeeeee
Confidence 79999999998653 5667789999999999971 123489999999999999999999999999
Q ss_pred cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (821)
-|++ +|++.. ...++++++.+..|.++++++... ..+.+. ..
T Consensus 155 LPeR--vYa~Dv-----~~pm~vVata~r~i~vynL~n~~t-----------------------------e~k~~~--Sp 196 (347)
T KOG0647|consen 155 LPER--VYAADV-----LYPMAVVATAERHIAVYNLENPPT-----------------------------EFKRIE--SP 196 (347)
T ss_pred ccce--eeehhc-----cCceeEEEecCCcEEEEEcCCCcc-----------------------------hhhhhc--Cc
Confidence 9987 455533 445788899999999999972100 001010 01
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccc---------eeEEEEEEcC--CEEEE
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---------ARVWDCCLTD--SFIIT 323 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~---------~~i~~v~~~~--~~l~s 323 (821)
-+-.+.||+..+|....+-|+-+|.+-|-.+..+..... ..+.-|. -.|.+++|++ ..|+|
T Consensus 197 Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n--------FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT 268 (347)
T KOG0647|consen 197 LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN--------FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT 268 (347)
T ss_pred ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc--------eeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence 233578899988888889999999999999988533111 2333343 2467889995 79999
Q ss_pred EeCCCeEEEEcCC-CceeeEeecccCCCeEEEEEecCCCEEEEE
Q 003423 324 AGEDCTCRVWGSD-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366 (821)
Q Consensus 324 ~~~dg~i~iwd~~-~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg 366 (821)
+|.||+..+||-+ ...+.+...|.. +|++.+|+.+|.+++-+
T Consensus 269 aGsDGtf~FWDkdar~kLk~s~~~~q-pItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 269 AGSDGTFSFWDKDARTKLKTSETHPQ-PITCCSFNRNGSIFAYA 311 (347)
T ss_pred ecCCceEEEecchhhhhhhccCcCCC-ccceeEecCCCCEEEEE
Confidence 9999999999984 445666777877 79999999999887655
No 86
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.5e-23 Score=204.44 Aligned_cols=289 Identities=16% Similarity=0.242 Sum_probs=218.8
Q ss_pred ceeeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEE
Q 003423 14 GQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (821)
Q Consensus 14 ~~~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~ 92 (821)
+.|.-+|++++++ || ..+.++++ +++|.=|++.+|+...-+-. .. .|..-...
T Consensus 139 ~~H~~s~~~vals--~d----~~~~fsask~g~i~kw~v~tgk~~~~i~~-~~-ev~k~~~~------------------ 192 (479)
T KOG0299|consen 139 GKHQLSVTSVALS--PD----DKRVFSASKDGTILKWDVLTGKKDRYIIE-RD-EVLKSHGN------------------ 192 (479)
T ss_pred ccccCcceEEEee--cc----ccceeecCCCcceeeeehhcCcccccccc-cc-hhhhhccC------------------
Confidence 3488899999999 98 45555554 89999999999876522211 00 11000000
Q ss_pred EEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEE
Q 003423 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (821)
Q Consensus 93 ~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~ 172 (821)
.++.- . ++|...|.+++.+| +|++||+|+.|+.|.||+..+.+.++.
T Consensus 193 ----------------------------~~k~~-r-~~h~keil~~avS~---Dgkylatgg~d~~v~Iw~~~t~ehv~~ 239 (479)
T KOG0299|consen 193 ----------------------------PLKES-R-KGHVKEILTLAVSS---DGKYLATGGRDRHVQIWDCDTLEHVKV 239 (479)
T ss_pred ----------------------------CCCcc-c-ccccceeEEEEEcC---CCcEEEecCCCceEEEecCcccchhhc
Confidence 01111 1 48999999999999 999999999999999999999999888
Q ss_pred EccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE
Q 003423 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (821)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (821)
+.+|.. .+.+++|. .....+++++.|+.|++|+++ ....+.++
T Consensus 240 ~~ghr~-~V~~L~fr---~gt~~lys~s~Drsvkvw~~~---------------------------------~~s~vetl 282 (479)
T KOG0299|consen 240 FKGHRG-AVSSLAFR---KGTSELYSASADRSVKVWSID---------------------------------QLSYVETL 282 (479)
T ss_pred cccccc-ceeeeeee---cCccceeeeecCCceEEEehh---------------------------------HhHHHHHH
Confidence 777655 46677774 345678999999999999998 66777788
Q ss_pred ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEE
Q 003423 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCR 331 (821)
Q Consensus 253 ~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~ 331 (821)
-||.+.|.+|....-++.+-.|+.|+++++|++..... ..+.+|.+.+-|++|- +..++||+.+|.|.
T Consensus 283 yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-----------lifrg~~~sidcv~~In~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 283 YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-----------LIFRGGEGSIDCVAFINDEHFVSGSDNGSIA 351 (479)
T ss_pred hCCccceeeechhcccceEEeccccceeEEEeccccce-----------eeeeCCCCCeeeEEEecccceeeccCCceEE
Confidence 89999999998887776666677999999999966544 5888999999999997 78999999999999
Q ss_pred EEcC-CCceeeEeecccC-----------CCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcC--CCcccCCccccccCCC
Q 003423 332 VWGS-DGKQLKMIKEHIG-----------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL--PGSLESHPEAKEFNGR 397 (821)
Q Consensus 332 iwd~-~~~~~~~~~~h~~-----------~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~ 397 (821)
+|++ ..+++.+.+...+ .-|++++..|...++++|+.+|.|++|.+.... +..+
T Consensus 352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l------------ 419 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLL------------ 419 (479)
T ss_pred EeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccccee------------
Confidence 9999 5666655432111 147899999999999999999999999985421 1110
Q ss_pred cceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEe
Q 003423 398 TEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (821)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~ 437 (821)
+.++ -.+.|++++|+++|+.++++
T Consensus 420 ---~~ls-------------~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 420 ---YSLS-------------LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ---eecc-------------cccEEEEEEEccCCCEEEEe
Confidence 1111 13669999999999855554
No 87
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=9.3e-24 Score=208.08 Aligned_cols=259 Identities=14% Similarity=0.203 Sum_probs=184.9
Q ss_pred ccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc----eeEEEccCcceeEEEEeeccCCccCeEE
Q 003423 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS----IILEVHSPERCLLYSMKLWGDNLEALRI 196 (821)
Q Consensus 121 ~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~s~~~~~~s~~~~~l 196 (821)
.......+++|+..|.++++.| .|..|++|+.|.+|++||+.... ..+++...+...+.++.| ++.+..|
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp---~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y---s~Tg~~i 229 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDP---SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY---SVTGDQI 229 (641)
T ss_pred CccceEeccCCceEEEEeeecC---CCceeeeccccceEEEEecccccccchhhhccCcccccccceeee---cCCCCeE
Confidence 4556778899999999999999 99999999999999999997532 345566666666777777 5677777
Q ss_pred EEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCC-CEEEEEe
Q 003423 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVS 275 (821)
Q Consensus 197 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~~l~s~s 275 (821)
++.+...+.+|+|-.+.+. ..+.. +..-..-+...+||...++|.+|+|+. +.++||+
T Consensus 230 Lvvsg~aqakl~DRdG~~~---------~e~~K------------GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s 288 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEI---------VEFSK------------GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS 288 (641)
T ss_pred EEEecCcceeEEccCCcee---------eeeec------------cchhhhhhhccCCceeeeeccccccCcccceEEec
Confidence 7777778999999762111 00000 000112344557999999999999976 5799999
Q ss_pred CCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCc---eeeE-eecccC-
Q 003423 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGK---QLKM-IKEHIG- 348 (821)
Q Consensus 276 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~---~~~~-~~~h~~- 348 (821)
.||++||||+...+.. .+.++.....+..-+++.++|+ +..|++|..||.|++|+..+. .... -..|..
T Consensus 289 ~DgtlRiWdv~~~k~q----~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g 364 (641)
T KOG0772|consen 289 YDGTLRIWDVNNTKSQ----LQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG 364 (641)
T ss_pred CCCcEEEEecCCchhh----eeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC
Confidence 9999999999876530 2223222333445568899998 588999999999999997322 2222 233443
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEEcCC--cCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEE
Q 003423 349 RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA--FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (821)
Q Consensus 349 ~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 426 (821)
..|++++|+++|++|++-|.|+++++||+++ +++....+. ++ ...-+..+
T Consensus 365 ~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL-----------------~t-----------~~~~tdc~ 416 (641)
T KOG0772|consen 365 QDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGL-----------------PT-----------PFPGTDCC 416 (641)
T ss_pred CceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCC-----------------Cc-----------cCCCCccc
Confidence 3599999999999999999999999999965 222221111 11 12356788
Q ss_pred eecCCeEEEEec
Q 003423 427 LTSEDTLYIATN 438 (821)
Q Consensus 427 f~~~~~~l~~~~ 438 (821)
|+|+.+++++..
T Consensus 417 FSPd~kli~TGt 428 (641)
T KOG0772|consen 417 FSPDDKLILTGT 428 (641)
T ss_pred cCCCceEEEecc
Confidence 999998888754
No 88
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.9e-22 Score=186.23 Aligned_cols=279 Identities=14% Similarity=0.198 Sum_probs=214.6
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEe-ecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLA-GSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~-g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
..+.|+++.|+ ++ +.+|++ ++|..|++||..+|+.++++..++- .++.+.|.... ...+...
T Consensus 13 ~~~~i~sl~fs--~~----G~~litss~dDsl~LYd~~~g~~~~ti~skky-G~~~~~Fth~~----------~~~i~sS 75 (311)
T KOG1446|consen 13 TNGKINSLDFS--DD----GLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-GVDLACFTHHS----------NTVIHSS 75 (311)
T ss_pred CCCceeEEEec--CC----CCEEEEecCCCeEEEEEcCCCceeeEeecccc-cccEEEEecCC----------ceEEEcc
Confidence 45679999999 88 556665 5578999999999999999987554 47777776221 1233333
Q ss_pred --cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEE
Q 003423 95 --GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (821)
Q Consensus 95 --g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~ 172 (821)
.|..||..++... +.++.+.||.+.|.+++.+| -++.+++++.|++|++||++..++..-
T Consensus 76 tk~d~tIryLsl~dN---------------kylRYF~GH~~~V~sL~~sP---~~d~FlS~S~D~tvrLWDlR~~~cqg~ 137 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHDN---------------KYLRYFPGHKKRVNSLSVSP---KDDTFLSSSLDKTVRLWDLRVKKCQGL 137 (311)
T ss_pred CCCCCceEEEEeecC---------------ceEEEcCCCCceEEEEEecC---CCCeEEecccCCeEEeeEecCCCCceE
Confidence 2789999999864 67999999999999999999 788999999999999999998777666
Q ss_pred EccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE
Q 003423 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (821)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (821)
+....+.+ ++| +|+|.++|+|...+.|++||++.-. ..+..++
T Consensus 138 l~~~~~pi---~Af---Dp~GLifA~~~~~~~IkLyD~Rs~d-------------------------------kgPF~tf 180 (311)
T KOG1446|consen 138 LNLSGRPI---AAF---DPEGLIFALANGSELIKLYDLRSFD-------------------------------KGPFTTF 180 (311)
T ss_pred EecCCCcc---eeE---CCCCcEEEEecCCCeEEEEEecccC-------------------------------CCCceeE
Confidence 65554433 233 6899999999888899999998211 1122222
Q ss_pred e---cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEecccee--E-EEEEEc--CCEEEEE
Q 003423 253 V---GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR--V-WDCCLT--DSFIITA 324 (821)
Q Consensus 253 ~---~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~--i-~~v~~~--~~~l~s~ 324 (821)
. +-....+.|.|+|||++|+-+...+.+.+.|.-++.. . ..+.++... + -+.+|. ++++++|
T Consensus 181 ~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~-----~-----~tfs~~~~~~~~~~~a~ftPds~Fvl~g 250 (311)
T KOG1446|consen 181 SITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV-----K-----STFSGYPNAGNLPLSATFTPDSKFVLSG 250 (311)
T ss_pred ccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE-----e-----eeEeeccCCCCcceeEEECCCCcEEEEe
Confidence 2 4467789999999999999999999999999988765 2 244443322 1 466776 4899999
Q ss_pred eCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 325 GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 325 ~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
+.||+|.+|++ +|+.+..+++....++.++.|+|.-.++++++ ..+.+|=.+
T Consensus 251 s~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~ 303 (311)
T KOG1446|consen 251 SDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD 303 (311)
T ss_pred cCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecc
Confidence 99999999999 89999999985333799999999877777765 468888653
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=4.8e-23 Score=199.01 Aligned_cols=278 Identities=16% Similarity=0.262 Sum_probs=227.4
Q ss_pred eeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCC
Q 003423 19 EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (821)
Q Consensus 19 ~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~ 97 (821)
.|+++... |. ...+++|. |..+.++|..+.+.+..++.+.. .|..+.++++. +..+.+..+.
T Consensus 221 gi~ald~~--~s----~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~k-ki~~v~~~~~~----------~~v~~aSad~ 283 (506)
T KOG0289|consen 221 GITALDII--PS----SSKILTGGEDKTAVLFDKPSNQILATLKGHTK-KITSVKFHKDL----------DTVITASADE 283 (506)
T ss_pred CeeEEeec--CC----CCcceecCCCCceEEEecchhhhhhhccCcce-EEEEEEeccch----------hheeecCCcc
Confidence 36777777 54 34566654 88999999999999999998665 79999998763 3566667799
Q ss_pred eEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccC-
Q 003423 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP- 176 (821)
Q Consensus 98 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~- 176 (821)
.|+||...... .......|..+|+.+..+| .|.||++++.|++..+.|++++..+......
T Consensus 284 ~i~vws~~~~s---------------~~~~~~~h~~~V~~ls~h~---tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~ 345 (506)
T KOG0289|consen 284 IIRVWSVPLSS---------------EPTSSRPHEEPVTGLSLHP---TGEYLLSASNDGTWAFSDISSGSQLTVVSDET 345 (506)
T ss_pred eEEeecccccc---------------Cccccccccccceeeeecc---CCcEEEEecCCceEEEEEccCCcEEEEEeecc
Confidence 99999987553 2345567999999999999 9999999999999999999999987766553
Q ss_pred cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCC
Q 003423 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (821)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 256 (821)
....+.++.|+ ||+.++++|+.||.++|||+. +......|.+|+
T Consensus 346 s~v~~ts~~fH---pDgLifgtgt~d~~vkiwdlk---------------------------------s~~~~a~Fpght 389 (506)
T KOG0289|consen 346 SDVEYTSAAFH---PDGLIFGTGTPDGVVKIWDLK---------------------------------SQTNVAKFPGHT 389 (506)
T ss_pred ccceeEEeeEc---CCceEEeccCCCceEEEEEcC---------------------------------CccccccCCCCC
Confidence 33456777785 899999999999999999998 555778889999
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEc
Q 003423 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334 (821)
Q Consensus 257 ~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd 334 (821)
++|..|+|+.+|-+||++.+|+.|++||++..+. .+.+ .......|.++.|. +.+++.+|.|=+|.+++
T Consensus 390 ~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-----~kt~----~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 390 GPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-----FKTI----QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred CceeEEEeccCceEEEEEecCCeEEEEEehhhcc-----ccee----eccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 9999999999999999999999999999998655 4321 22223368888887 78999998887777776
Q ss_pred C---CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 335 S---DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 335 ~---~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
- ...++..+..|.+ ..+.+.|....+++++++.|..++++.+
T Consensus 461 k~~k~W~~~~~~~~~sg-~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 461 KKTKSWTEIKELADHSG-LSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccccceeeehhhhccc-ccceeeecccceEEeeccchhheEEeec
Confidence 4 4677888888887 5889999999999999999999888754
No 90
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.5e-23 Score=210.45 Aligned_cols=263 Identities=14% Similarity=0.210 Sum_probs=214.5
Q ss_pred cceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCC
Q 003423 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (821)
Q Consensus 35 ~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~ 114 (821)
...|+.|.+..|.+|+..+++........ ...|.++.|++++ ..+.+...++.|.|||....
T Consensus 188 ~n~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G----------~~LavG~~~g~v~iwD~~~~------- 249 (484)
T KOG0305|consen 188 ANVLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDG----------SHLAVGTSDGTVQIWDVKEQ------- 249 (484)
T ss_pred CCeEEEEecceEEEEecCCCceEEeEecC-CCceEEEEECCCC----------CEEEEeecCCeEEEEehhhc-------
Confidence 46899999999999999999865544433 5679999999765 24555567899999998754
Q ss_pred CCccccccceeeeccC-CCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEE-EccCcceeEEEEeeccCCcc
Q 003423 115 QPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE-VHSPERCLLYSMKLWGDNLE 192 (821)
Q Consensus 115 ~~~~~~~~~~~~~~~~-h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~s~~~~~~s~~ 192 (821)
+....+.+ |...|-+++|. +..+.+|+.|+.|..+|+...+.... +..|. ..+..+.+ ++|
T Consensus 250 --------k~~~~~~~~h~~rvg~laW~-----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~-qeVCgLkw---s~d 312 (484)
T KOG0305|consen 250 --------KKTRTLRGSHASRVGSLAWN-----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHR-QEVCGLKW---SPD 312 (484)
T ss_pred --------cccccccCCcCceeEEEecc-----CceEEEecCCCcEEEEEEecchhhhhhhhccc-ceeeeeEE---CCC
Confidence 34566667 99999999996 46789999999999999998776544 44443 33445555 689
Q ss_pred CeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcC-CCCEE
Q 003423 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKL 271 (821)
Q Consensus 193 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~~~l 271 (821)
+.++|+|+.|+.+.|||.. ...+...+..|.+.|.+++|+| ...+|
T Consensus 313 ~~~lASGgnDN~~~Iwd~~---------------------------------~~~p~~~~~~H~aAVKA~awcP~q~~lL 359 (484)
T KOG0305|consen 313 GNQLASGGNDNVVFIWDGL---------------------------------SPEPKFTFTEHTAAVKALAWCPWQSGLL 359 (484)
T ss_pred CCeeccCCCccceEeccCC---------------------------------CccccEEEeccceeeeEeeeCCCccCce
Confidence 9999999999999999997 5677888899999999999999 45688
Q ss_pred EEEe--CCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCC--EEEEE--eCCCeEEEEcC-CCceeeEee
Q 003423 272 VSVS--DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS--FIITA--GEDCTCRVWGS-DGKQLKMIK 344 (821)
Q Consensus 272 ~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--~l~s~--~~dg~i~iwd~-~~~~~~~~~ 344 (821)
|+|+ .|++|++||..++.. + ....-.+.|.++.|++. -|+++ ..++.|.||++ .-+.+..+.
T Consensus 360 AsGGGs~D~~i~fwn~~~g~~-----i------~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~ 428 (484)
T KOG0305|consen 360 ATGGGSADRCIKFWNTNTGAR-----I------DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL 428 (484)
T ss_pred EEcCCCcccEEEEEEcCCCcE-----e------cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec
Confidence 8874 699999999998876 3 44445678999999943 35544 35678999999 778899999
Q ss_pred cccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 345 EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 345 ~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
+|..+ |..++++|+|..+++|+.|.++++|++
T Consensus 429 gH~~R-Vl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 429 GHTSR-VLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred CCcce-eEEEEECCCCCEEEEecccCcEEeccc
Confidence 99995 999999999999999999999999998
No 91
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.2e-22 Score=185.41 Aligned_cols=291 Identities=14% Similarity=0.173 Sum_probs=210.3
Q ss_pred eEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEe
Q 003423 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG 325 (821)
Q Consensus 248 ~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~ 325 (821)
+.+.+..-.+.|.++.|+++|.+|++++.|-+++|||..+++. . ..+..++-.+..++|. ++.++.++
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-----~-----~ti~skkyG~~~~~Fth~~~~~i~sS 75 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-----V-----KTINSKKYGVDLACFTHHSNTVIHSS 75 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-----e-----eEeecccccccEEEEecCCceEEEcc
Confidence 3444555678899999999999999999999999999999876 4 3555565667777776 56666666
Q ss_pred C--CCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEE
Q 003423 326 E--DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFS 402 (821)
Q Consensus 326 ~--dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (821)
. |.+||.-++ +.+.++.+.+|.. .|.+++.+|-+..+++++.|++|++||++....+.+ +.
T Consensus 76 tk~d~tIryLsl~dNkylRYF~GH~~-~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~---------------l~ 139 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHDNKYLRYFPGHKK-RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL---------------LN 139 (311)
T ss_pred CCCCCceEEEEeecCceEEEcCCCCc-eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE---------------Ee
Confidence 4 899999999 8999999999998 599999999999999999999999999974221111 00
Q ss_pred eecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCc-EEEEEecCCCcceeeEe-eeccCCcceEEEeccCCCCCCC
Q 003423 403 IKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY-LYHTKLCDMDSVNWNKI-LQVSEGMPIICMDLLSNEPKYP 480 (821)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~-~~~~~i~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~s 480 (821)
...-...||.|+|-+++....+. +..+++-....+.+... .......+...+.++
T Consensus 140 ----------------~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS------- 196 (311)
T KOG1446|consen 140 ----------------LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFS------- 196 (311)
T ss_pred ----------------cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEc-------
Confidence 01135678999999988887764 44333322222222221 111233444445553
Q ss_pred CCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCccc
Q 003423 481 CGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVC 560 (821)
Q Consensus 481 ~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 560 (821)
++++.+++++..+.+++.|--++.. ...+...+. .....+-.+++|+++++++|+.||+|.+|+++++
T Consensus 197 -~dGK~iLlsT~~s~~~~lDAf~G~~----~~tfs~~~~--~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg----- 264 (311)
T KOG1446|consen 197 -PDGKSILLSTNASFIYLLDAFDGTV----KSTFSGYPN--AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG----- 264 (311)
T ss_pred -CCCCEEEEEeCCCcEEEEEccCCcE----eeeEeeccC--CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC-----
Confidence 4679999999999999998665542 223333333 3323355678999999999999999999999887
Q ss_pred ccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecC
Q 003423 561 YESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (821)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~ 610 (821)
..+..+...+..+++|+.|+|.-..+++++. .+.+|=.+
T Consensus 265 ---------~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw~p~ 303 (311)
T KOG1446|consen 265 ---------KKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFWLPD 303 (311)
T ss_pred ---------cEeeEecCCCCCCccccccCCceeeeeecCc--eEEEEecc
Confidence 4444553347888999999998777777765 67888544
No 92
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.7e-23 Score=212.13 Aligned_cols=239 Identities=20% Similarity=0.363 Sum_probs=191.2
Q ss_pred eEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc
Q 003423 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 89 ~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
+++.++.|+.|++|+........+ -.....++.|.+||.+++..- +++.|++|+.|-+|++|+...+.
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s---------~~~~asme~HsDWVNDiiL~~---~~~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPS---------TPYIASMEHHSDWVNDIILCG---NGKTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred eEEecCCCceEEEeccccccCCcc---------cchhhhhhhhHhHHhhHHhhc---CCCceEEecCCceEEEeecccCc
Confidence 455566699999999886542111 124678899999999999988 89999999999999999998773
Q ss_pred --eeEEEccC---cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccc
Q 003423 169 --IILEVHSP---ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (821)
Q Consensus 169 --~~~~~~~~---~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (821)
+..++..| .+|+.+. .++..++|+|+.|+.|++||+..... ....++
T Consensus 107 ~~c~stir~H~DYVkcla~~------ak~~~lvaSgGLD~~IflWDin~~~~------~l~~s~---------------- 158 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI------AKNNELVASGGLDRKIFLWDINTGTA------TLVASF---------------- 158 (735)
T ss_pred chhHhhhhcccchheeeeec------ccCceeEEecCCCccEEEEEccCcch------hhhhhc----------------
Confidence 44444433 3444442 26788999999999999999983210 000000
Q ss_pred cceeeEEEEe-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCE
Q 003423 244 HTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSF 320 (821)
Q Consensus 244 ~~~~~~~~~~-~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~ 320 (821)
.......+. ||..+|.+++.++.|..+++|+..+.+++||.++++. + ..+.||...|.++..+ +..
T Consensus 159 -n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k-----i-----mkLrGHTdNVr~ll~~dDGt~ 227 (735)
T KOG0308|consen 159 -NNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK-----I-----MKLRGHTDNVRVLLVNDDGTR 227 (735)
T ss_pred -cccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccc-----e-----eeeeccccceEEEEEcCCCCe
Confidence 111222233 8999999999999999999999999999999999765 3 5888999999999998 689
Q ss_pred EEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 321 IITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 321 l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
+++++.||+|++||+ ..+++.++..|.. .||++..+|+-..+++|+.||.|..=|+.+
T Consensus 228 ~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 228 LLSASSDGTIRLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred EeecCCCceEEeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 999999999999999 7889999999998 699999999999999999999999988855
No 93
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=3.2e-24 Score=206.00 Aligned_cols=279 Identities=17% Similarity=0.250 Sum_probs=220.4
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEe-ecCCeEEEEECCCCe--eeeEEEeeccccEEeEEeccccCCCCCCccceeeEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLA-GSGSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~-g~~~~i~iwd~~t~~--~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~ 92 (821)
|.+.|..+.|- ++ ...|+. |.|..|++|+....+ .+.++.. ...+|..+.+.+++ ...++
T Consensus 174 h~gev~~v~~l--~~----sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaG-s~g~it~~d~d~~~----------~~~iA 236 (459)
T KOG0288|consen 174 HEGEVHDVEFL--RN----SDTLATGGSDRIIKLWNVLGEKSELISTLAG-SLGNITSIDFDSDN----------KHVIA 236 (459)
T ss_pred cccccceeEEc--cC----cchhhhcchhhhhhhhhcccchhhhhhhhhc-cCCCcceeeecCCC----------ceEEe
Confidence 77889999999 76 445555 559999999997665 5666665 33479999998553 35777
Q ss_pred EEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEE
Q 003423 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (821)
Q Consensus 93 ~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~ 172 (821)
.+.|+.+++|+++. .+..++|.||++.|+++.|.. ....+++|+.|.+|++||+....+.++
T Consensus 237 as~d~~~r~Wnvd~---------------~r~~~TLsGHtdkVt~ak~~~---~~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDS---------------LRLRHTLSGHTDKVTAAKFKL---SHSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred ecCCCceeeeeccc---------------hhhhhhhcccccceeeehhhc---cccceeeccccchhhhhhhhhhheecc
Confidence 77899999999984 367889999999999999987 555699999999999999999888877
Q ss_pred EccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE
Q 003423 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (821)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (821)
+-....|.-..+ ....+++|-.|++|++||.+ ...+....
T Consensus 299 ~l~~S~cnDI~~-------~~~~~~SgH~DkkvRfwD~R---------------------------------s~~~~~sv 338 (459)
T KOG0288|consen 299 VLPGSQCNDIVC-------SISDVISGHFDKKVRFWDIR---------------------------------SADKTRSV 338 (459)
T ss_pred ccccccccceEe-------cceeeeecccccceEEEecc---------------------------------CCceeeEe
Confidence 655444322111 25578899999999999998 55566666
Q ss_pred ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeE
Q 003423 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (821)
Q Consensus 253 ~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i 330 (821)
..|. .|+++..++++..|.+++.|.++.+.|+++... ..... +.-.......+.+.|+ +.|+++|+.||.|
T Consensus 339 ~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI-----~~~~s-A~g~k~asDwtrvvfSpd~~YvaAGS~dgsv 411 (459)
T KOG0288|consen 339 PLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI-----RQTFS-AEGFKCASDWTRVVFSPDGSYVAAGSADGSV 411 (459)
T ss_pred ecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccE-----EEEee-ccccccccccceeEECCCCceeeeccCCCcE
Confidence 6554 899999999999999999999999999998764 22211 1111122337788998 4899999999999
Q ss_pred EEEcC-CCceeeEeecccCC-CeEEEEEecCCCEEEEEeCCCcEEEEE
Q 003423 331 RVWGS-DGKQLKMIKEHIGR-GIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (821)
Q Consensus 331 ~iwd~-~~~~~~~~~~h~~~-~i~~l~~~~~~~~l~tg~~dg~I~iwd 376 (821)
+||++ .+++...+...... .|++++|+|.|..+++++.++.+.+|.
T Consensus 412 ~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 412 YIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999 78888877765552 599999999999999999999999993
No 94
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.7e-23 Score=219.95 Aligned_cols=214 Identities=12% Similarity=0.131 Sum_probs=169.3
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (821)
-+++..+.||.+.|+++.|+ ..++|++++-|.+||+|++....++..+.... .+.+++|++ .|+.++++|+.
T Consensus 359 ekP~~ef~GHt~DILDlSWS----Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hnd--fVTcVaFnP--vDDryFiSGSL 430 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWS----KNNFLLSSSMDKTVRLWHPGRKECLKVFSHND--FVTCVAFNP--VDDRYFISGSL 430 (712)
T ss_pred ccchhhhhccchhheecccc----cCCeeEeccccccEEeecCCCcceeeEEecCC--eeEEEEecc--cCCCcEeeccc
Confidence 46788999999999999999 46689999999999999999999998886544 688888875 48899999999
Q ss_pred CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 003423 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (821)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~ 281 (821)
||.|+||++. ..+...- ..-..-|++++|.|||++.+.|+.+|.++
T Consensus 431 D~KvRiWsI~---------------------------------d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 431 DGKVRLWSIS---------------------------------DKKVVDW-NDLRDLITAVCYSPDGKGAVIGTFNGYCR 476 (712)
T ss_pred ccceEEeecC---------------------------------cCeeEee-hhhhhhheeEEeccCCceEEEEEeccEEE
Confidence 9999999997 2233322 23347899999999999999999999999
Q ss_pred EEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcC-CCceeeEeecccCC-CeEEEEE
Q 003423 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR-GIWRCLY 356 (821)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~-~i~~l~~ 356 (821)
+|+....+......+.... ..-..|. +|+++.|. ++.++..+.|..|||+|. +.+.+..|+++... .-....|
T Consensus 477 fY~t~~lk~~~~~~I~~~~-~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asf 554 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHN-KKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASF 554 (712)
T ss_pred EEEccCCeEEEeeeEeecc-CccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeE
Confidence 9999886541100010000 0111233 89999998 367888899999999999 67788888876541 2246688
Q ss_pred ecCCCEEEEEeCCCcEEEEEcCC
Q 003423 357 DSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 357 ~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
+.||++|+++++|..|.+|++..
T Consensus 555 s~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 555 SSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccCCCEEEEeecCceEEEEeCCC
Confidence 99999999999999999999854
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.5e-22 Score=182.92 Aligned_cols=274 Identities=12% Similarity=0.159 Sum_probs=210.1
Q ss_pred eeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc--cCcceeEEEEeeccCCccCeEEEEEeeCC
Q 003423 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH--SPERCLLYSMKLWGDNLEALRIASGTIYN 203 (821)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (821)
+.+++|...|.+++|+- +|..||+|+.|+++++|+++.......+. +|.. .+-.+++++ +...++++++.|.
T Consensus 14 r~~~~~~~~v~Sv~wn~---~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~-svdql~w~~--~~~d~~atas~dk 87 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC---DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTD-SVDQLCWDP--KHPDLFATASGDK 87 (313)
T ss_pred HHhhhhhhcceEEEEcc---cCceeeecccCCceEEEEecchhhhhhhcccCCCc-chhhheeCC--CCCcceEEecCCc
Confidence 56788999999999999 99999999999999999998876554443 3332 233333333 4566899999999
Q ss_pred EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 003423 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (821)
Q Consensus 204 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iw 283 (821)
+|++||.+ ..++........+.| -+.|+|+|++++.++.|..|.+.
T Consensus 88 ~ir~wd~r---------------------------------~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~i 133 (313)
T KOG1407|consen 88 TIRIWDIR---------------------------------SGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFI 133 (313)
T ss_pred eEEEEEec---------------------------------cCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEE
Confidence 99999999 667777766444444 58899999999999999999999
Q ss_pred ecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCC
Q 003423 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (821)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~ 360 (821)
|.++.+. .........+..++|+ +++++.....|+|.|... .-+++.+++.|.. ...|+.|+|+|
T Consensus 134 d~r~~~~-----------~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~G 201 (313)
T KOG1407|consen 134 DARTYKI-----------VNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDG 201 (313)
T ss_pred Eecccce-----------eehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCc-ceEEEEECCCC
Confidence 9998765 2333444556677776 567776677799999998 7899999999998 68899999999
Q ss_pred CEEEEEeCCCcEEEEEcCC-cCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecC
Q 003423 361 SLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH 439 (821)
Q Consensus 361 ~~l~tg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~ 439 (821)
+++|+|++|..+.+||++. -|.+.+ ..++-+|+.+.|+.+|++|++++.
T Consensus 202 ryfA~GsADAlvSLWD~~ELiC~R~i------------------------------sRldwpVRTlSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 202 RYFATGSADALVSLWDVDELICERCI------------------------------SRLDWPVRTLSFSHDGRMLASASE 251 (313)
T ss_pred ceEeeccccceeeccChhHhhhheee------------------------------ccccCceEEEEeccCcceeeccCc
Confidence 9999999999999999954 223322 122456999999999999999874
Q ss_pred CcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCC
Q 003423 440 GYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGK 493 (821)
Q Consensus 440 g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~ 493 (821)
. ..++|...+++. ++.+.+...+...++..|.. .+||.++.|
T Consensus 252 D--h~IDIA~vetGd--~~~eI~~~~~t~tVAWHPk~--------~LLAyA~dd 293 (313)
T KOG1407|consen 252 D--HFIDIAEVETGD--RVWEIPCEGPTFTVAWHPKR--------PLLAYACDD 293 (313)
T ss_pred c--ceEEeEecccCC--eEEEeeccCCceeEEecCCC--------ceeeEEecC
Confidence 4 444666655554 56666777788888886644 777766544
No 96
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.91 E-value=3.5e-22 Score=181.10 Aligned_cols=295 Identities=13% Similarity=0.185 Sum_probs=223.2
Q ss_pred EEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEE
Q 003423 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (821)
Q Consensus 60 ~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~ 139 (821)
++.|++ +++.|.++.++ +.++.++.|....+|--.. ++.+.++.||.+.|+|++
T Consensus 6 l~GHER-plTqiKyN~eG----------DLlFscaKD~~~~vw~s~n---------------GerlGty~GHtGavW~~D 59 (327)
T KOG0643|consen 6 LQGHER-PLTQIKYNREG----------DLLFSCAKDSTPTVWYSLN---------------GERLGTYDGHTGAVWCCD 59 (327)
T ss_pred cccCcc-ccceEEecCCC----------cEEEEecCCCCceEEEecC---------------CceeeeecCCCceEEEEE
Confidence 455666 79999998665 5888999999999998653 467889999999999999
Q ss_pred EeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee-----CCEEEEEEcccCC
Q 003423 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-----YNEIIVWKVDWEH 214 (821)
Q Consensus 140 ~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~-----dg~i~vwd~~~~~ 214 (821)
..- +.+.|+||+.|.++++||+++|+++..++.+. .+..+.| +.++++++..+. .+.|.++|++...
T Consensus 60 id~---~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~--~Vk~~~F---~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 60 IDW---DSKHLITGSADQTAKLWDVETGKQLATWKTNS--PVKRVDF---SFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred ecC---CcceeeeccccceeEEEEcCCCcEEEEeecCC--eeEEEee---ccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 988 88999999999999999999999998887655 3555555 567777776654 3678999988211
Q ss_pred cccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCC
Q 003423 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (821)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 294 (821)
. ......+...+..++..++.+-|.|-+++|++|.+||.|.+||++++..
T Consensus 132 ~--------------------------~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~---- 181 (327)
T KOG0643|consen 132 S--------------------------DIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE---- 181 (327)
T ss_pred h--------------------------hhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce----
Confidence 0 0013456777778999999999999999999999999999999999754
Q ss_pred CceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCc
Q 003423 295 SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (821)
Q Consensus 295 ~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~ 371 (821)
.. .....|.+.|+.++++ ..+++|++.|.+-++||. +-+.++++.... +|.+.+++|....++.||....
T Consensus 182 -~v----~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 182 -LV----DSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred -ee----echhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc--cccceecccccceEEecCCcee
Confidence 21 3556788999999999 489999999999999999 677788887544 6999999998888777764322
Q ss_pred EEEEEcCCc--CCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEec-CCcE
Q 003423 372 IKVHQFQAF--LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN-HGYL 442 (821)
Q Consensus 372 I~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~-~g~~ 442 (821)
-|+.+. ...+++. +++... ..+.+....+|=++|++++|+|+|+.+++.. +|.+
T Consensus 255 ---~dVTTT~~r~GKFEA-----------rFyh~i---~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~V 311 (327)
T KOG0643|consen 255 ---MDVTTTSTRAGKFEA-----------RFYHLI---FEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYV 311 (327)
T ss_pred ---eeeeeecccccchhh-----------hHHHHH---HHHHhccccccccCcceeEECCCCcccccCCCCceE
Confidence 233221 1111111 111111 1234555677888999999999998887764 4444
No 97
>PTZ00421 coronin; Provisional
Probab=99.91 E-value=3.8e-22 Score=213.77 Aligned_cols=204 Identities=19% Similarity=0.284 Sum_probs=160.5
Q ss_pred eccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc-------eeEEEccCcceeEEEEeeccCCcc-CeEEEE
Q 003423 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-------IILEVHSPERCLLYSMKLWGDNLE-ALRIAS 198 (821)
Q Consensus 127 ~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~s~~~~~~s~~-~~~l~s 198 (821)
.+.+|.+.|++++|+|. ++++||+|+.|++|++||+.++. .+..+.+|.. .+.++.|+ |+ ..+|++
T Consensus 70 ~l~GH~~~V~~v~fsP~--d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~-~V~~l~f~---P~~~~iLaS 143 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPF--DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK-KVGIVSFH---PSAMNVLAS 143 (493)
T ss_pred eEeCCCCCEEEEEEcCC--CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCC-cEEEEEeC---cCCCCEEEE
Confidence 46799999999999982 56799999999999999997653 3456666654 46677774 44 469999
Q ss_pred EeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCC
Q 003423 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (821)
Q Consensus 199 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg 278 (821)
|+.|+.|+|||+. ....+..+.+|...|.+++|+|++++|++++.|+
T Consensus 144 gs~DgtVrIWDl~---------------------------------tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg 190 (493)
T PTZ00421 144 AGADMVVNVWDVE---------------------------------RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDK 190 (493)
T ss_pred EeCCCEEEEEECC---------------------------------CCeEEEEEcCCCCceEEEEEECCCCEEEEecCCC
Confidence 9999999999998 5567778889999999999999999999999999
Q ss_pred eEEEEecccCcccCCCCceeeeceEEeccceeE-EEEEEc--CCEEEEEe----CCCeEEEEcCC--CceeeEeecccCC
Q 003423 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV-WDCCLT--DSFIITAG----EDCTCRVWGSD--GKQLKMIKEHIGR 349 (821)
Q Consensus 279 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i-~~v~~~--~~~l~s~~----~dg~i~iwd~~--~~~~~~~~~h~~~ 349 (821)
+|++||+++++. + ..+.+|...+ ..+.|. ...+++++ .|+.|++||+. .+++.....+...
T Consensus 191 ~IrIwD~rsg~~-----v-----~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~ 260 (493)
T PTZ00421 191 KLNIIDPRDGTI-----V-----SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS 260 (493)
T ss_pred EEEEEECCCCcE-----E-----EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC
Confidence 999999998654 3 4667787643 355666 35677655 47999999993 3344444434433
Q ss_pred CeEEEEEecCCCEEEEEe-CCCcEEEEEcCC
Q 003423 350 GIWRCLYDSLSSLLVTAG-FDSAIKVHQFQA 379 (821)
Q Consensus 350 ~i~~l~~~~~~~~l~tg~-~dg~I~iwd~~~ 379 (821)
.+....|++++++|++++ .|+.|++||+..
T Consensus 261 ~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 261 ALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 466677899999999988 599999999954
No 98
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=6.8e-23 Score=209.49 Aligned_cols=281 Identities=15% Similarity=0.289 Sum_probs=223.1
Q ss_pred eeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcE
Q 003423 56 LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWV 135 (821)
Q Consensus 56 ~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 135 (821)
+-+.+..|+. .|..+.+.+. ...+.++.|+++++|+-..+. ....+.+.+|.+.|
T Consensus 6 ls~~l~gH~~-DVr~v~~~~~-----------~~i~s~sRd~t~~vw~~~~~~-------------~l~~~~~~~~~g~i 60 (745)
T KOG0301|consen 6 LSHELEGHKS-DVRAVAVTDG-----------VCIISGSRDGTVKVWAKKGKQ-------------YLETHAFEGPKGFI 60 (745)
T ss_pred eEEEeccCcc-chheeEecCC-----------eEEeecCCCCceeeeeccCcc-------------cccceecccCccee
Confidence 4456666554 4666665532 124444458999999976443 34456788899999
Q ss_pred EE-EEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCC
Q 003423 136 FD-VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (821)
Q Consensus 136 ~~-~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~ 214 (821)
.. +++.+ .++..|++|+.|.+|.+|...+...+..+.+|...+ .++.. ..++ .+++|+.|.++++|...
T Consensus 61 ~~~i~y~e--~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snV-C~ls~---~~~~-~~iSgSWD~TakvW~~~--- 130 (745)
T KOG0301|consen 61 ANSICYAE--SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNV-CSLSI---GEDG-TLISGSWDSTAKVWRIG--- 130 (745)
T ss_pred eccceecc--ccCcceEeecccceEEEEecCCCCchhhhhccccce-eeeec---CCcC-ceEecccccceEEecch---
Confidence 88 88876 245569999999999999999999999999998753 34432 1333 49999999999999876
Q ss_pred cccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCC
Q 003423 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (821)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 294 (821)
++...+.||+.+|++++.-|++ .++|||.|++|++|.-.+.
T Consensus 131 --------------------------------~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~------ 171 (745)
T KOG0301|consen 131 --------------------------------ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTL------ 171 (745)
T ss_pred --------------------------------hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCch------
Confidence 4455688999999999999987 8999999999999987443
Q ss_pred CceeeeceEEeccceeEEEEEEcC-CEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 003423 295 SIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIK 373 (821)
Q Consensus 295 ~~~~~~~~~~~~h~~~i~~v~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~ 373 (821)
. .++.||..-|..+++-+ ..++|++.||.|++|+++|.++..+.+|+. .|.+++...++..++++|+|++++
T Consensus 172 -l-----~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 172 -L-----KTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred -h-----hhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEE
Confidence 2 58999999999999985 599999999999999999999999999999 699999888889999999999999
Q ss_pred EEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEec
Q 003423 374 VHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLC 448 (821)
Q Consensus 374 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~ 448 (821)
+|+.. .+.+.+ ..| ...+.+..+.++|.+++++++|.++.+...
T Consensus 245 iW~~~-e~~q~I------------------~lP------------ttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 245 IWKKD-ECVQVI------------------TLP------------TTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EeecC-ceEEEE------------------ecC------------ccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 99975 222211 111 234888999999999999999999866544
No 99
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.3e-22 Score=187.96 Aligned_cols=239 Identities=20% Similarity=0.379 Sum_probs=187.0
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (821)
+.+.+.+.||.+.|+.++... ....+.+++.|.+.+||.++++.++.+..+|.++ +.++.|+ +.+.++++++.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~---tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GS-VNsikfh---~s~~L~lTaSG 210 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADS---TQPICGTASADHTARIWSLESGACLATYTGHTGS-VNSIKFH---NSGLLLLTASG 210 (481)
T ss_pred Eeehhhhcccccceeeehhhc---CCcceeecccccceeEEeeccccceeeecccccc-eeeEEec---cccceEEEccC
Confidence 456778899999999999877 7779999999999999999999999999988775 6677874 67889999999
Q ss_pred CCEEEEEEcccCCcccCCCC-------CCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEE
Q 003423 202 YNEIIVWKVDWEHVAPLLNS-------PEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (821)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~ 274 (821)
|++-.||...-+-..|.+.. ....+.+.+......-.-.++..-..++..+.||.+.|.+..|...|+.++++
T Consensus 211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTa 290 (481)
T KOG0300|consen 211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTA 290 (481)
T ss_pred CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeee
Confidence 99999998542222222110 00000010000000000112222346788899999999999999999999999
Q ss_pred eCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEEeCCCeEEEEcCC--CceeeEeecccCCC
Q 003423 275 SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGSD--GKQLKMIKEHIGRG 350 (821)
Q Consensus 275 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~~~dg~i~iwd~~--~~~~~~~~~h~~~~ 350 (821)
+.|++..+||+.+++. + ..+.||....+.++-++ .++++.+.|.+.++||.. -..+..|++|.. .
T Consensus 291 SWDRTAnlwDVEtge~-----v-----~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd-t 359 (481)
T KOG0300|consen 291 SWDRTANLWDVETGEV-----V-----NILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD-T 359 (481)
T ss_pred eccccceeeeeccCce-----e-----ccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc-c
Confidence 9999999999999876 4 58899999999888874 788999999999999993 456778999999 6
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 351 i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
|++..|..+ ..+++|+.|.+|++||+++
T Consensus 360 VTS~vF~~d-d~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 360 VTSVVFNTD-DRVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred eeEEEEecC-CceeecCCCceEEEeeecc
Confidence 999999875 4589999999999999954
No 100
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.91 E-value=2e-21 Score=195.96 Aligned_cols=224 Identities=17% Similarity=0.268 Sum_probs=163.1
Q ss_pred CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce--e---
Q 003423 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--I--- 170 (821)
Q Consensus 96 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~--~--- 170 (821)
++.+-+.-+..... +-+.+..+.+|.+.|+++.|+|. ...+||||+.|..|+||.+..+.. +
T Consensus 54 G~~lgvlPl~~~Gr-----------~~r~i~~l~~H~d~VtDl~FspF--~D~LLAT~S~D~~VKiW~lp~g~~q~LSap 120 (1012)
T KOG1445|consen 54 GGKLGVLPLTAKGR-----------RTRDIGILAAHGDQVTDLGFSPF--ADELLATCSRDEPVKIWKLPRGHSQKLSAP 120 (1012)
T ss_pred CceEEEEeccccCc-----------cccccceeecccceeeccCcccc--chhhhhcccCCCeeEEEecCCCcccccCCc
Confidence 35777777664321 12356678899999999999994 778999999999999999985422 1
Q ss_pred EEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEE
Q 003423 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (821)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (821)
...-++...++-.+.|++.. | .+++++ ..|.++|||+. +.+.+.
T Consensus 121 e~~~g~~~~~vE~l~fHpTa-D-gil~s~-a~g~v~i~D~s---------------------------------tqk~~~ 164 (1012)
T KOG1445|consen 121 EIDVGGGNVIVECLRFHPTA-D-GILASG-AHGSVYITDIS---------------------------------TQKTAV 164 (1012)
T ss_pred ceeecCCceEEEEeecccCc-C-ceEEec-cCceEEEEEcc---------------------------------cCceee
Confidence 12235556667778887542 3 344444 55999999999 778899
Q ss_pred EEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEecccee-EEEEEEcCC--EEEEEeCC
Q 003423 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR-VWDCCLTDS--FIITAGED 327 (821)
Q Consensus 251 ~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~-i~~v~~~~~--~l~s~~~d 327 (821)
.+.+|...|.+..|+.||.+|++.+.|+.|+|||.+.... .+ ....+|.+. =..+.|.++ .|++.|.+
T Consensus 165 el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~-------pi--Q~te~H~~~rdsRv~w~Gn~~rlisTGF~ 235 (1012)
T KOG1445|consen 165 ELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASME-------PI--QTTEGHGGMRDSRVLWAGNWERLISTGFT 235 (1012)
T ss_pred cccCCchhhhccccccCCceEeeecCCcceEEeCCccCCC-------cc--ccccccccchhheeeeccchhhhhhcccc
Confidence 9999999999999999999999999999999999987532 22 455777654 234677764 77777765
Q ss_pred ----CeEEEEcCC--CceeeEeecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEEc
Q 003423 328 ----CTCRVWGSD--GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQF 377 (821)
Q Consensus 328 ----g~i~iwd~~--~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~-~dg~I~iwd~ 377 (821)
..+++||.. +..+.++.-...-+|.--.|+||.++|+.+| .+..+.++.+
T Consensus 236 ~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~ 292 (1012)
T KOG1445|consen 236 TKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEM 292 (1012)
T ss_pred hhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEe
Confidence 579999982 4556655544333466667889888765554 5667777776
No 101
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=2.5e-22 Score=195.93 Aligned_cols=281 Identities=16% Similarity=0.227 Sum_probs=208.7
Q ss_pred eeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeE----E---E-------cc---CcceeEEEEeec
Q 003423 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL----E---V-------HS---PERCLLYSMKLW 187 (821)
Q Consensus 125 ~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~----~---~-------~~---~~~~~~~s~~~~ 187 (821)
+..+..|.-.|++++++| ++.+..+++.+++|.-|++.+++... + + +. .+...+.+++.
T Consensus 135 ~~~~~~H~~s~~~vals~---d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av- 210 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSP---DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV- 210 (479)
T ss_pred ceeeccccCcceEEEeec---cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE-
Confidence 567778999999999999 99999999999999999999887431 1 0 00 11223445555
Q ss_pred cCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCC
Q 003423 188 GDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC 267 (821)
Q Consensus 188 ~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 267 (821)
++|+.+||+|+.|..|.||+++ +.++++.+.+|.+.|.+++|-..
T Consensus 211 --S~Dgkylatgg~d~~v~Iw~~~---------------------------------t~ehv~~~~ghr~~V~~L~fr~g 255 (479)
T KOG0299|consen 211 --SSDGKYLATGGRDRHVQIWDCD---------------------------------TLEHVKVFKGHRGAVSSLAFRKG 255 (479)
T ss_pred --cCCCcEEEecCCCceEEEecCc---------------------------------ccchhhcccccccceeeeeeecC
Confidence 7899999999999999999999 77888999999999999999888
Q ss_pred CCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEE-EEeCCCeEEEEcCCCceeeEeec
Q 003423 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFII-TAGEDCTCRVWGSDGKQLKMIKE 345 (821)
Q Consensus 268 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~-s~~~dg~i~iwd~~~~~~~~~~~ 345 (821)
...|++++.|++|++|++..... + .+++||+..|.++... -..++ .|+.|+++++|++.......+.+
T Consensus 256 t~~lys~s~Drsvkvw~~~~~s~-----v-----etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg 325 (479)
T KOG0299|consen 256 TSELYSASADRSVKVWSIDQLSY-----V-----ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRG 325 (479)
T ss_pred ccceeeeecCCceEEEehhHhHH-----H-----HHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeC
Confidence 88999999999999999998665 4 5899999999999776 34445 45599999999996555667888
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEE
Q 003423 346 HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (821)
Q Consensus 346 h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 425 (821)
+.+ .+-|++|-. ...+++|+.||.|.+|++... ..++....+...........+..+|+++
T Consensus 326 ~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KK-----------------kplf~~~~AHgv~~~~~~~~~~~Witsl 386 (479)
T KOG0299|consen 326 GEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKK-----------------KPLFTSRLAHGVIPELDPVNGNFWITSL 386 (479)
T ss_pred CCC-CeeeEEEec-ccceeeccCCceEEEeeeccc-----------------CceeEeeccccccCCccccccccceeee
Confidence 877 699999975 578999999999999999442 1122222111111110111122589999
Q ss_pred EeecCCeEEEEec-CCcEEEEEecCCCcceeeEeeeccCCcceEEEeccC
Q 003423 426 HLTSEDTLYIATN-HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLS 474 (821)
Q Consensus 426 ~f~~~~~~l~~~~-~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~ 474 (821)
+..|...++++.+ +|.+..|.+.+.-. ....+...+..+-|..+.+..
T Consensus 387 a~i~~sdL~asGS~~G~vrLW~i~~g~r-~i~~l~~ls~~GfVNsl~f~~ 435 (479)
T KOG0299|consen 387 AVIPGSDLLASGSWSGCVRLWKIEDGLR-AINLLYSLSLVGFVNSLAFSN 435 (479)
T ss_pred EecccCceEEecCCCCceEEEEecCCcc-ccceeeecccccEEEEEEEcc
Confidence 9999887777654 78887666654311 233444455555555565544
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.9e-21 Score=168.49 Aligned_cols=294 Identities=15% Similarity=0.229 Sum_probs=205.4
Q ss_pred ccccEEeEEeccccCCCCCCccceeeEEEEE-cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEee
Q 003423 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (821)
Q Consensus 64 ~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~ 142 (821)
+.+.|..+.|+|.+ .+.+++ ..++++|.....-......-+.......-..+.-+.|.+.|+|.+|+|
T Consensus 31 dsqairav~fhp~g-----------~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAG-----------GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred chhheeeEEecCCC-----------ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 45579999999775 244443 457788765432110000000000111233455667899999999999
Q ss_pred cCCCCCEEEEEECCCcEEEEEccCCcee-----EEEccCcceeEEEEeeccCCc-cCeEEEEEe-eCCEEEEEEcccCCc
Q 003423 143 VCNGNRSLAIGCSDNSIRVWDISNSSII-----LEVHSPERCLLYSMKLWGDNL-EALRIASGT-IYNEIIVWKVDWEHV 215 (821)
Q Consensus 143 ~~~~~~~l~t~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~s~~~~~~s~-~~~~l~sg~-~dg~i~vwd~~~~~~ 215 (821)
+|++||||+.|.+|++.-+....+- .++.-|.. .+..++|...+. .+.+|++++ .|..|++=|+.
T Consensus 100 ---~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdg-tirdl~fld~~~s~~~il~s~gagdc~iy~tdc~---- 171 (350)
T KOG0641|consen 100 ---CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDG-TIRDLAFLDDPESGGAILASAGAGDCKIYITDCG---- 171 (350)
T ss_pred ---ccCeEEecCCCceEEEEecccccccccCcceeeeecCC-ceeeeEEecCCCcCceEEEecCCCcceEEEeecC----
Confidence 9999999999999999877644321 23333433 355666655433 345666654 47788888888
Q ss_pred ccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCC
Q 003423 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS 295 (821)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 295 (821)
.++.++.+.||++.|.++ ++=++-.+++|+.|.+||+||++-...
T Consensus 172 -----------------------------~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~----- 216 (350)
T KOG0641|consen 172 -----------------------------RGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSC----- 216 (350)
T ss_pred -----------------------------CCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccce-----
Confidence 778889999999999987 334678999999999999999997655
Q ss_pred ceeeeceEEec---cceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCC
Q 003423 296 IEEVGSSVLYG---HNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (821)
Q Consensus 296 ~~~~~~~~~~~---h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~d 369 (821)
+..+.. .+.+ ..+.|.+++.. +.+|++|-+|..+.+||+ .++.++.+..|.. .|.++.|+|...++++++.|
T Consensus 217 v~~l~~-~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd 294 (350)
T KOG0641|consen 217 VNTLDN-DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYD 294 (350)
T ss_pred eeeccC-cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEeccc
Confidence 332211 1222 23567888876 689999999999999999 6789999999998 59999999999999999999
Q ss_pred CcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEec
Q 003423 370 SAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (821)
Q Consensus 370 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~ 438 (821)
..|++-|+++.....+. +.....|.+.+..+.|.|++--+++++
T Consensus 295 ~~ikltdlqgdla~el~-------------------------~~vv~ehkdk~i~~rwh~~d~sfisss 338 (350)
T KOG0641|consen 295 MKIKLTDLQGDLAHELP-------------------------IMVVAEHKDKAIQCRWHPQDFSFISSS 338 (350)
T ss_pred ceEEEeecccchhhcCc-------------------------eEEEEeccCceEEEEecCccceeeecc
Confidence 99999999775433221 112233455577788888876555554
No 103
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.2e-22 Score=206.62 Aligned_cols=266 Identities=17% Similarity=0.248 Sum_probs=212.6
Q ss_pred eEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc
Q 003423 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 89 ~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
..++++-+..|.+|+-..+. ...+..+ +.+.|+++.|++ +|..||+|..+|.|.|||..+.+
T Consensus 189 n~laValg~~vylW~~~s~~-------------v~~l~~~--~~~~vtSv~ws~---~G~~LavG~~~g~v~iwD~~~~k 250 (484)
T KOG0305|consen 189 NVLAVALGQSVYLWSASSGS-------------VTELCSF--GEELVTSVKWSP---DGSHLAVGTSDGTVQIWDVKEQK 250 (484)
T ss_pred CeEEEEecceEEEEecCCCc-------------eEEeEec--CCCceEEEEECC---CCCEEEEeecCCeEEEEehhhcc
Confidence 47888888999999987553 2333333 278899999999 99999999999999999999999
Q ss_pred eeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceee
Q 003423 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (821)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (821)
.+..+..++...+-++++ +...+.+|+.++.|..+|++. ....
T Consensus 251 ~~~~~~~~h~~rvg~laW-----~~~~lssGsr~~~I~~~dvR~--------------------------------~~~~ 293 (484)
T KOG0305|consen 251 KTRTLRGSHASRVGSLAW-----NSSVLSSGSRDGKILNHDVRI--------------------------------SQHV 293 (484)
T ss_pred ccccccCCcCceeEEEec-----cCceEEEecCCCcEEEEEEec--------------------------------chhh
Confidence 888888855555555553 578999999999999999981 1122
Q ss_pred EEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEe
Q 003423 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAG 325 (821)
Q Consensus 249 ~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~ 325 (821)
...+.+|...|.+++|++|+++||+|+.|+.+.|||...... . ..+..|.+.|.+++|. .+.|++|+
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p-----~-----~~~~~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP-----K-----FTFTEHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc-----c-----EEEeccceeeeEeeeCCCccCceEEcC
Confidence 224789999999999999999999999999999999965443 2 6899999999999998 48999886
Q ss_pred --CCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEE--EeCCCcEEEEEcCCcCCCcccCCccccccCCCcce
Q 003423 326 --EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT--AGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (821)
Q Consensus 326 --~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~t--g~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 400 (821)
.|+.|++||. .|+.+..+.... .|.+|.|++..+-|++ |..++.|.+|++.+.
T Consensus 364 Gs~D~~i~fwn~~~g~~i~~vdtgs--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-------------------- 421 (484)
T KOG0305|consen 364 GSADRCIKFWNTNTGARIDSVDTGS--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-------------------- 421 (484)
T ss_pred CCcccEEEEEEcCCCcEecccccCC--ceeeEEEcCCCCEEEEecCCCCCcEEEEecccc--------------------
Confidence 8999999999 788888876554 4999999998866655 446778999998441
Q ss_pred EEeecCCcccceeccCCCCcceEEEEeecCCeEEE-EecCCcEEEEEecCC
Q 003423 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCDM 450 (821)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~-~~~~g~~~~~~i~~~ 450 (821)
.....+.+|...|-.++.+|+|..++ ++.+..+..+++++.
T Consensus 422 ---------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 422 ---------KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ---------ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 11233456778899999999985554 556677877777775
No 104
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2e-22 Score=187.15 Aligned_cols=236 Identities=17% Similarity=0.256 Sum_probs=187.1
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|.++|||+|++ ++++++|+ |.+|+|||+.+...+..+-.|.+ .|+++.|.+.. +. ..++.+.
T Consensus 42 H~~sitavAVs--------~~~~aSGssDetI~IYDm~k~~qlg~ll~Hag-sitaL~F~~~~----S~----shLlS~s 104 (362)
T KOG0294|consen 42 HAGSITALAVS--------GPYVASGSSDETIHIYDMRKRKQLGILLSHAG-SITALKFYPPL----SK----SHLLSGS 104 (362)
T ss_pred cccceeEEEec--------ceeEeccCCCCcEEEEeccchhhhcceecccc-ceEEEEecCCc----ch----hheeeec
Confidence 88999999999 78999987 89999999999998888887755 79999998652 11 2588889
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
.||.|.+|+... +..+..+++|.+.|++++.+| .+++-++.+.|+.+++||+.+|+.-..+.
T Consensus 105 dDG~i~iw~~~~---------------W~~~~slK~H~~~Vt~lsiHP---S~KLALsVg~D~~lr~WNLV~Gr~a~v~~ 166 (362)
T KOG0294|consen 105 DDGHIIIWRVGS---------------WELLKSLKAHKGQVTDLSIHP---SGKLALSVGGDQVLRTWNLVRGRVAFVLN 166 (362)
T ss_pred CCCcEEEEEcCC---------------eEEeeeecccccccceeEecC---CCceEEEEcCCceeeeehhhcCccceeec
Confidence 999999999862 688999999999999999999 99988888999999999999988755444
Q ss_pred cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (821)
-.....+ +.| ++.+.+++.+.. +.|-+|.+. .......+.
T Consensus 167 L~~~at~--v~w---~~~Gd~F~v~~~-~~i~i~q~d---------------------------------~A~v~~~i~- 206 (362)
T KOG0294|consen 167 LKNKATL--VSW---SPQGDHFVVSGR-NKIDIYQLD---------------------------------NASVFREIE- 206 (362)
T ss_pred cCCccee--eEE---cCCCCEEEEEec-cEEEEEecc---------------------------------cHhHhhhhh-
Confidence 3332222 333 367777776655 678899887 222222222
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc----CCEEEEEeCCCeE
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTC 330 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~----~~~l~s~~~dg~i 330 (821)
....+.++.|. ++..|++|++|+.|++||..+... . ..+.+|..+|-++.+. ..+|+|++.||.|
T Consensus 207 ~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~-----~-----~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I 275 (362)
T KOG0294|consen 207 NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP-----L-----TEFLAHENRVKDIASYTNPEHEYLVTASSDGFI 275 (362)
T ss_pred ccccceeeeec-CCceEEEecCCceEEEeccCCCcc-----c-----eeeecchhheeeeEEEecCCceEEEEeccCceE
Confidence 22456777775 567899999999999999987544 2 5888999999999965 2599999999999
Q ss_pred EEEcCCC
Q 003423 331 RVWGSDG 337 (821)
Q Consensus 331 ~iwd~~~ 337 (821)
++||++.
T Consensus 276 ~vWd~~~ 282 (362)
T KOG0294|consen 276 KVWDIDM 282 (362)
T ss_pred EEEEccc
Confidence 9999943
No 105
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=8.6e-24 Score=199.55 Aligned_cols=277 Identities=16% Similarity=0.240 Sum_probs=214.3
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|...|.||+=. |. ....+++|+ ||.|+|||+.+.+++.+++.|.+ .|.||++... ..+.++
T Consensus 65 HrdGV~~lakh--p~---~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G-~V~Gi~v~~~------------~~~tvg 126 (433)
T KOG0268|consen 65 HRDGVSCLAKH--PN---KLSTVASGSCDGEVKIWNLSQRECIRTFKAHEG-LVRGICVTQT------------SFFTVG 126 (433)
T ss_pred cccccchhhcC--cc---hhhhhhccccCceEEEEehhhhhhhheeecccC-ceeeEEeccc------------ceEEec
Confidence 66778999988 87 335677777 99999999999999999999887 6999999843 478888
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
.|++|+.|.++.. +.+++.+- ..++++.-+. .+..+|||+. .|.|||......+.++.
T Consensus 127 dDKtvK~wk~~~~----------------p~~tilg~-s~~~gIdh~~---~~~~FaTcGe--~i~IWD~~R~~Pv~sms 184 (433)
T KOG0268|consen 127 DDKTVKQWKIDGP----------------PLHTILGK-SVYLGIDHHR---KNSVFATCGE--QIDIWDEQRDNPVSSMS 184 (433)
T ss_pred CCcceeeeeccCC----------------cceeeecc-cccccccccc---ccccccccCc--eeeecccccCCccceee
Confidence 8999999998742 33444332 4466777666 6778899875 59999998888887776
Q ss_pred cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (821)
-.... +.++.|.+ -...+|++++.|+.|.+||++ +..+++.+.
T Consensus 185 wG~Dt-i~svkfNp--vETsILas~~sDrsIvLyD~R---------------------------------~~~Pl~KVi- 227 (433)
T KOG0268|consen 185 WGADS-ISSVKFNP--VETSILASCASDRSIVLYDLR---------------------------------QASPLKKVI- 227 (433)
T ss_pred cCCCc-eeEEecCC--CcchheeeeccCCceEEEecc---------------------------------cCCccceee-
Confidence 54432 44565532 245678888899999999999 333333322
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEE
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~i 332 (821)
-.-.-+.|+|+|++-.+++++.|..+..+|++.-.. ++ ....+|.+.|.++.|+ +.-+++|+.|.+|+|
T Consensus 228 ~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~-------p~--~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRI 298 (433)
T KOG0268|consen 228 LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR-------PL--NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRI 298 (433)
T ss_pred eeccccceecCccccceeeccccccceehhhhhhcc-------cc--hhhcccceeEEEeccCCCcchhccccccceEEE
Confidence 223357899999888899999999999999987543 11 5788999999999999 689999999999999
Q ss_pred EcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 333 wd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
+.. .+.....+....-..|.++.|+.|.+++++|+.|+.|++|.-.
T Consensus 299 f~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 299 FPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred eecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 999 4433333333333369999999999999999999999999874
No 106
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8.2e-23 Score=189.20 Aligned_cols=296 Identities=14% Similarity=0.240 Sum_probs=225.0
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|...|..++.. . ++..+.+++ |.+-+||.+++|+++.++..|.+ .|.+|.|++.+ ..++.++
T Consensus 147 HkDGiW~Vaa~--~----tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G-SVNsikfh~s~----------~L~lTaS 209 (481)
T KOG0300|consen 147 HKDGIWHVAAD--S----TQPICGTASADHTARIWSLESGACLATYTGHTG-SVNSIKFHNSG----------LLLLTAS 209 (481)
T ss_pred cccceeeehhh--c----CCcceeecccccceeEEeeccccceeeeccccc-ceeeEEecccc----------ceEEEcc
Confidence 55566666655 2 355555555 89999999999999999999777 79999999764 3567778
Q ss_pred cCCeEEEEEEe----ecC--CCCCC-----C------CC--c------cccccceeeeccCCCCcEEEEEEeecCCCCCE
Q 003423 95 GEKRVKLFELN----FEL--SPNSQ-----Y------QP--E------TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRS 149 (821)
Q Consensus 95 g~~~v~i~~~~----~~~--~~~~~-----~------~~--~------~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~ 149 (821)
||++..||... ... .+... . .+ + +..--.++..+.+|...|.+..|.. .|+.
T Consensus 210 GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~---gg~Q 286 (481)
T KOG0300|consen 210 GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA---GGQQ 286 (481)
T ss_pred CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc---Ccce
Confidence 99999999722 110 00000 0 00 0 0011235678899999999999998 9999
Q ss_pred EEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCC
Q 003423 150 LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (821)
Q Consensus 150 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 229 (821)
++|++-|.+..+||+++++.+..+.+|....-. +.- .|...++++.+.|-+.++||.+
T Consensus 287 ~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtH-cst---HptQrLVvTsSrDtTFRLWDFR------------------ 344 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGEVVNILTGHDSELTH-CST---HPTQRLVVTSSRDTTFRLWDFR------------------ 344 (481)
T ss_pred eeeeeccccceeeeeccCceeccccCcchhccc-ccc---CCcceEEEEeccCceeEeccch------------------
Confidence 999999999999999999999999888765332 222 3678899999999999999998
Q ss_pred CCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccce
Q 003423 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (821)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 309 (821)
...+.+..|.||...|+++.|..+ ..+++|++|++|++||+++... . ....-..+
T Consensus 345 --------------eaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs-----p-----lATIRtdS 399 (481)
T KOG0300|consen 345 --------------EAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS-----P-----LATIRTDS 399 (481)
T ss_pred --------------hhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccC-----c-----ceeeecCC
Confidence 245667888999999999999875 5799999999999999998754 1 12223356
Q ss_pred eEEEEEEc--CCEEEEEeCCCeEEEEcCCCceeeEe-----ecccCCCeEEEEEecCC--CEEEEEeCCCcEEEEEcCC
Q 003423 310 RVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMI-----KEHIGRGIWRCLYDSLS--SLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 310 ~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~h~~~~i~~l~~~~~~--~~l~tg~~dg~I~iwd~~~ 379 (821)
++..++.+ ...++.--.+..|++||+.|..+..+ ++|.. -|.|++|..+. .-|+++|.|..+.-|+++.
T Consensus 400 ~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrR-MV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 400 PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRR-MVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccce-eeeeeeccccCcccccccccccceeeeeEecc
Confidence 67777776 35677777788999999988766554 46666 59999997543 4689999999999998853
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=3.7e-22 Score=192.97 Aligned_cols=278 Identities=12% Similarity=0.193 Sum_probs=220.9
Q ss_pred CcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEccc
Q 003423 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~ 212 (821)
..|+++...| ....++||+.|..+.++|...++.+..+++|...+.. +.+ .++...+++++.|-.|+||...
T Consensus 220 pgi~ald~~~---s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~-v~~---~~~~~~v~~aSad~~i~vws~~- 291 (506)
T KOG0289|consen 220 PGITALDIIP---SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITS-VKF---HKDLDTVITASADEIIRVWSVP- 291 (506)
T ss_pred CCeeEEeecC---CCCcceecCCCCceEEEecchhhhhhhccCcceEEEE-EEe---ccchhheeecCCcceEEeeccc-
Confidence 4588888888 6678999999999999999999999999999876543 444 4778899999999999999987
Q ss_pred CCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccC
Q 003423 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (821)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~ 292 (821)
..........|+++|+.+..+|.|.||++++.|++..+.|++++..
T Consensus 292 --------------------------------~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~-- 337 (506)
T KOG0289|consen 292 --------------------------------LSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ-- 337 (506)
T ss_pred --------------------------------cccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE--
Confidence 3334455678999999999999999999999999999999999865
Q ss_pred CCCceeeeceEEecc---ceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEE
Q 003423 293 SDSIEEVGSSVLYGH---NARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366 (821)
Q Consensus 293 ~~~~~~~~~~~~~~h---~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg 366 (821)
. ....+ .-.+++.+|+ +..|.+|..||.+++||+ ++..+..|.+|.+ +|..++|+.+|-+|+++
T Consensus 338 ---l------t~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~ 407 (506)
T KOG0289|consen 338 ---L------TVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATA 407 (506)
T ss_pred ---E------EEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEE
Confidence 2 22233 3458999999 467789999999999999 6778889999999 69999999999999999
Q ss_pred eCCCcEEEEEcCCc-CCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEE
Q 003423 367 GFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (821)
Q Consensus 367 ~~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~ 445 (821)
..|+.|++||++.. ..+++.- ++ ...+.++.|.+.|.+++.. |....+
T Consensus 408 add~~V~lwDLRKl~n~kt~~l------------------~~-----------~~~v~s~~fD~SGt~L~~~--g~~l~V 456 (506)
T KOG0289|consen 408 ADDGSVKLWDLRKLKNFKTIQL------------------DE-----------KKEVNSLSFDQSGTYLGIA--GSDLQV 456 (506)
T ss_pred ecCCeEEEEEehhhcccceeec------------------cc-----------cccceeEEEcCCCCeEEee--cceeEE
Confidence 99999999999652 2222211 11 1248999999999888877 454455
Q ss_pred EecCCCcceeeEeeeccCCc-ceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEe
Q 003423 446 KLCDMDSVNWNKILQVSEGM-PIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRV 501 (821)
Q Consensus 446 ~i~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~ 501 (821)
.+....+..|..+...+... ...+..+.. ...++++++.+..+++|.+
T Consensus 457 y~~~k~~k~W~~~~~~~~~sg~st~v~Fg~--------~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 457 YICKKKTKSWTEIKELADHSGLSTGVRFGE--------HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEecccccceeeehhhhcccccceeeecc--------cceEEeeccchhheEEeec
Confidence 56666677788887766443 556666543 3488999999988888764
No 108
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=2.1e-21 Score=208.55 Aligned_cols=217 Identities=15% Similarity=0.188 Sum_probs=161.4
Q ss_pred CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCC-CCEEEEEECCCcEEEEEccCCce------
Q 003423 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSSI------ 169 (821)
Q Consensus 97 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~------ 169 (821)
+.+++|+.... ..+..+.+|.+.|++++|+| + +++||+|+.|++|+|||+.++..
T Consensus 54 gvI~L~~~~r~---------------~~v~~L~gH~~~V~~lafsP---~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~ 115 (568)
T PTZ00420 54 GAIRLENQMRK---------------PPVIKLKGHTSSILDLQFNP---CFSEILASGSEDLTIRVWEIPHNDESVKEIK 115 (568)
T ss_pred eEEEeeecCCC---------------ceEEEEcCCCCCEEEEEEcC---CCCCEEEEEeCCCeEEEEECCCCCccccccc
Confidence 56788876532 45678899999999999999 6 78999999999999999976421
Q ss_pred --eEEEccCcceeEEEEeeccCCccCe-EEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccce
Q 003423 170 --ILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (821)
Q Consensus 170 --~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (821)
+..+.+|. ..+.++.|+ |++. ++++|+.|+.|++||+. ..
T Consensus 116 ~p~~~L~gH~-~~V~sVaf~---P~g~~iLaSgS~DgtIrIWDl~---------------------------------tg 158 (568)
T PTZ00420 116 DPQCILKGHK-KKISIIDWN---PMNYYIMCSSGFDSFVNIWDIE---------------------------------NE 158 (568)
T ss_pred cceEEeecCC-CcEEEEEEC---CCCCeEEEEEeCCCeEEEEECC---------------------------------CC
Confidence 22344443 346677774 5554 56899999999999998 44
Q ss_pred eeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEE-----EEEEc--CC
Q 003423 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW-----DCCLT--DS 319 (821)
Q Consensus 247 ~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~-----~v~~~--~~ 319 (821)
.....+. |...|.+++|+|+|.+|++++.|+.|+|||++++.. . ..+.+|.+.+. ...|+ +.
T Consensus 159 ~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~-----i-----~tl~gH~g~~~s~~v~~~~fs~d~~ 227 (568)
T PTZ00420 159 KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI-----A-----SSFHIHDGGKNTKNIWIDGLGGDDN 227 (568)
T ss_pred cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE-----E-----EEEecccCCceeEEEEeeeEcCCCC
Confidence 4455554 667899999999999999999999999999998755 3 46778876543 23343 47
Q ss_pred EEEEEeCCC----eEEEEcCC--CceeeEeecccCCC-eEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 320 FIITAGEDC----TCRVWGSD--GKQLKMIKEHIGRG-IWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 320 ~l~s~~~dg----~i~iwd~~--~~~~~~~~~h~~~~-i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
++++++.|+ +|++||+. ++++..+..+.... +......+++.++++|+.|+.|++|++..
T Consensus 228 ~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 228 YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 899988774 79999994 55666554433312 22222344588899999999999999954
No 109
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.3e-21 Score=181.58 Aligned_cols=278 Identities=19% Similarity=0.278 Sum_probs=208.1
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEE
Q 003423 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRV 332 (821)
Q Consensus 254 ~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~i 332 (821)
..+..|..|.|+|.++.|+.++.||++++||+..... .....|.+++.+++|. +..+++|+.||.|+.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l-----------~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~ 79 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL-----------KLKFKHGAPLLDCAFADESTIVTGGLDGQVRR 79 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh-----------hhheecCCceeeeeccCCceEEEeccCceEEE
Confidence 3467899999999988888889999999999998755 4677899999999999 589999999999999
Q ss_pred EcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcC-CCcccCCccccccCCCcceEEeecCCcccc
Q 003423 333 WGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL-PGSLESHPEAKEFNGRTEIFSIKIPNFSEQ 411 (821)
Q Consensus 333 wd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (821)
+|+.......+..|.. +|.++.+.+....+++||.|++|++||.+... ..+++
T Consensus 80 ~Dln~~~~~~igth~~-~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d------------------------- 133 (323)
T KOG1036|consen 80 YDLNTGNEDQIGTHDE-GIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD------------------------- 133 (323)
T ss_pred EEecCCcceeeccCCC-ceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-------------------------
Confidence 9997777778888887 79999999988999999999999999996421 11110
Q ss_pred eeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEec
Q 003423 412 IRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGD 491 (821)
Q Consensus 412 ~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~ 491 (821)
..+.|-++... .+.+++++.+.++..+++-+..... +......+.++.|+.+.++. .-.++++
T Consensus 134 ------~~kkVy~~~v~-g~~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~--------eGy~~sS 196 (323)
T KOG1036|consen 134 ------QGKKVYCMDVS-GNRLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNG--------EGYVVSS 196 (323)
T ss_pred ------cCceEEEEecc-CCEEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEecCC--------CceEEEe
Confidence 11236666655 4578888888888866665543322 22233345677788876643 6678899
Q ss_pred CCccEEEEEecCCCCCCcceeEEeeccCccceeeeeE----EeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccc
Q 003423 492 GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTY----WCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTN 567 (821)
Q Consensus 492 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 567 (821)
.+|.+.+=.++.........+.+.+|+......-.+. ..++|-...|+||+.||.|.+||+...+
T Consensus 197 ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK----------- 265 (323)
T KOG1036|consen 197 IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK----------- 265 (323)
T ss_pred ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchh-----------
Confidence 9999988666655444455566666664432221111 2456777889999999999999988762
Q ss_pred eeeeeEEEecccCceEEEEEeecCCCEEEEEcC
Q 003423 568 NVFLVAEFSSCFGARIMCLDASFEDEVLFCGDL 600 (821)
Q Consensus 568 ~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~ 600 (821)
-+..+ ......|.+++|+.+|..||+|+.
T Consensus 266 ---rl~q~-~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 266 ---RLKQL-AKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ---hhhhc-cCCCCceEEEEeccCCCeEEEEec
Confidence 22233 344677999999999999999976
No 110
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.1e-21 Score=181.17 Aligned_cols=280 Identities=19% Similarity=0.247 Sum_probs=201.0
Q ss_pred ecCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCe
Q 003423 253 VGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT 329 (821)
Q Consensus 253 ~~h~~~I~~l~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~ 329 (821)
...++.|.+|+||| ...+++.+|.|++||+|+++.... .. + .....|.++|.+++|+ +..+++|+.|+.
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-----~~--~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-----LV--P-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCc-----cc--c-hhhhccCCCeEEEEEccCCceEEeeccCCc
Confidence 35678999999999 455677999999999999988422 11 1 3667899999999999 689999999999
Q ss_pred EEEEcCCCceeeEeecccCCCeEEEEEecCCC--EEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCC
Q 003423 330 CRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSS--LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPN 407 (821)
Q Consensus 330 i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~--~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (821)
+++||+....+.++..|.+ +|..+.|-+... .|+||+.|++|+.||++.. ..+..+.+|+
T Consensus 96 ~k~wDL~S~Q~~~v~~Hd~-pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-----------------~pv~t~~LPe 157 (347)
T KOG0647|consen 96 AKLWDLASGQVSQVAAHDA-PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-----------------NPVATLQLPE 157 (347)
T ss_pred eEEEEccCCCeeeeeeccc-ceeEEEEecCCCcceeEecccccceeecccCCC-----------------Ceeeeeeccc
Confidence 9999995557888999998 799999977654 8999999999999999652 2233333332
Q ss_pred cccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEE
Q 003423 408 FSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWV 487 (821)
Q Consensus 408 ~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l 487 (821)
. +.++..- ..-+.+++.+..+..+++.+..+.. +....+....+.|+++..+. +..
T Consensus 158 R-------------vYa~Dv~-~pm~vVata~r~i~vynL~n~~te~--k~~~SpLk~Q~R~va~f~d~--------~~~ 213 (347)
T KOG0647|consen 158 R-------------VYAADVL-YPMAVVATAERHIAVYNLENPPTEF--KRIESPLKWQTRCVACFQDK--------DGF 213 (347)
T ss_pred e-------------eeehhcc-CceeEEEecCCcEEEEEcCCCcchh--hhhcCcccceeeEEEEEecC--------Cce
Confidence 1 2222221 2245566777778877776654432 22223346677788776644 555
Q ss_pred EEecCCccEEEEEecCCCCCCcceeEEeeccCccc---eeeeeE-EeecCCCeEEEEECCCCcEEEeeecCCCCcccccC
Q 003423 488 ALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIER---QLLGTY-WCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYES 563 (821)
Q Consensus 488 ~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 563 (821)
++|+.+|++.|..++.... +..+.+.+|...+. .++.+- .++.|-...|+|++.||+..+||-....
T Consensus 214 alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~------- 284 (347)
T KOG0647|consen 214 ALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART------- 284 (347)
T ss_pred EeeeecceEEEEecCCCCc--cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh-------
Confidence 9999999999999887533 44556666654322 122221 2455777889999999999999976552
Q ss_pred CccceeeeeEEEecccCceEEEEEeecCCCEEEEEc
Q 003423 564 SKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGD 599 (821)
Q Consensus 564 ~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs 599 (821)
-+.. ...|..+|+|.+|+.+|.++|-+.
T Consensus 285 -------kLk~-s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 285 -------KLKT-SETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred -------hhhc-cCcCCCccceeEecCCCCEEEEEe
Confidence 1222 267899999999999999887654
No 111
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=1.3e-21 Score=176.85 Aligned_cols=271 Identities=13% Similarity=0.147 Sum_probs=210.8
Q ss_pred ceeeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEee-ccccEEeEEeccccCCCCCCccceeeEE
Q 003423 14 GQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEV 91 (821)
Q Consensus 14 ~~~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~-~~~~i~~i~~~~~~~~~~~~~~~~~~~l 91 (821)
..|.++|..++|+ .+ +..|++|+ |+++.||+++-++........ +...|-.++|.|.+ ++ .+.
T Consensus 17 ~~~~~~v~Sv~wn--~~----g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~----~d-----~~a 81 (313)
T KOG1407|consen 17 QGHVQKVHSVAWN--CD----GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH----PD-----LFA 81 (313)
T ss_pred hhhhhcceEEEEc--cc----CceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC----Cc-----ceE
Confidence 3488999999999 77 77888887 899999999877554443321 22257778887654 43 677
Q ss_pred EEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeE
Q 003423 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (821)
Q Consensus 92 ~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~ 171 (821)
+++||+.|++||+...+ +......-.+. .-+.|+| +|++++.+..|..|.+.|..+.+...
T Consensus 82 tas~dk~ir~wd~r~~k---------------~~~~i~~~~en-i~i~wsp---~g~~~~~~~kdD~it~id~r~~~~~~ 142 (313)
T KOG1407|consen 82 TASGDKTIRIWDIRSGK---------------CTARIETKGEN-INITWSP---DGEYIAVGNKDDRITFIDARTYKIVN 142 (313)
T ss_pred EecCCceEEEEEeccCc---------------EEEEeeccCcc-eEEEEcC---CCCEEEEecCcccEEEEEecccceee
Confidence 88899999999998653 34444333333 3478999 99999999999999999999877765
Q ss_pred EEc--cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeE
Q 003423 172 EVH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (821)
Q Consensus 172 ~~~--~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (821)
+.+ .....+.|. .++.+++.-+..|.|.|-.+. ..+++
T Consensus 143 ~~~~~~e~ne~~w~-------~~nd~Fflt~GlG~v~ILsyp---------------------------------sLkpv 182 (313)
T KOG1407|consen 143 EEQFKFEVNEISWN-------NSNDLFFLTNGLGCVEILSYP---------------------------------SLKPV 182 (313)
T ss_pred hhcccceeeeeeec-------CCCCEEEEecCCceEEEEecc---------------------------------ccccc
Confidence 433 222333333 233444444455899998887 77889
Q ss_pred EEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC
Q 003423 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (821)
Q Consensus 250 ~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d 327 (821)
..+++|.....||.|+|+|++||+|+.|-.+.+||+...-+ . ..+.-+.-+|..+.|+ +.+|+++++|
T Consensus 183 ~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC-----~-----R~isRldwpVRTlSFS~dg~~lASaSED 252 (313)
T KOG1407|consen 183 QSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC-----E-----RCISRLDWPVRTLSFSHDGRMLASASED 252 (313)
T ss_pred cccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh-----h-----eeeccccCceEEEEeccCcceeeccCcc
Confidence 99999999999999999999999999999999999998654 3 4677788899999998 7999999999
Q ss_pred CeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCC
Q 003423 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370 (821)
Q Consensus 328 g~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg 370 (821)
..|-|=++ +|..+..++.. + +...++|+|...+||-++.|.
T Consensus 253 h~IDIA~vetGd~~~eI~~~-~-~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 253 HFIDIAEVETGDRVWEIPCE-G-PTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred ceEEeEecccCCeEEEeecc-C-CceeEEecCCCceeeEEecCC
Confidence 99998888 78888887643 4 578999999999999888764
No 112
>PTZ00421 coronin; Provisional
Probab=99.90 E-value=4.1e-21 Score=205.86 Aligned_cols=272 Identities=9% Similarity=0.048 Sum_probs=189.8
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeee----------e---EEEeeccccEEeEEeccccCCCCC
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLI----------R---PFQVFHGIRLHGISCNFINCTEGS 82 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~----------~---~~~~~~~~~i~~i~~~~~~~~~~~ 82 (821)
+...|....++ +| +..++++..+.....|+...|..+ . .+..|. ..|.+++|+|.
T Consensus 19 ~~~~i~~~~~~--~d---~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~-~~V~~v~fsP~------ 86 (493)
T PTZ00421 19 HFLNVTPSTAL--WD---CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQE-GPIIDVAFNPF------ 86 (493)
T ss_pred ceecccccccc--CC---CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCC-CCEEEEEEcCC------
Confidence 44556666666 65 234444444555566665443322 1 234444 47999999962
Q ss_pred CccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCC-CEEEEEECCCcEEE
Q 003423 83 VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRV 161 (821)
Q Consensus 83 ~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~-~~l~t~~~d~~i~i 161 (821)
++ ..+++++.|+.|++|++........ ....+..+.+|...|.+++|+| ++ ++|++|+.|++|+|
T Consensus 87 d~---~~LaSgS~DgtIkIWdi~~~~~~~~--------~~~~l~~L~gH~~~V~~l~f~P---~~~~iLaSgs~DgtVrI 152 (493)
T PTZ00421 87 DP---QKLFTASEDGTIMGWGIPEEGLTQN--------ISDPIVHLQGHTKKVGIVSFHP---SAMNVLASAGADMVVNV 152 (493)
T ss_pred CC---CEEEEEeCCCEEEEEecCCCccccc--------cCcceEEecCCCCcEEEEEeCc---CCCCEEEEEeCCCEEEE
Confidence 11 2455566799999999975421000 1245678899999999999999 64 69999999999999
Q ss_pred EEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecc
Q 003423 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (821)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (821)
||+.+++.+..+..+.. .+.++.| ++++.+|++|+.|+.|++||++
T Consensus 153 WDl~tg~~~~~l~~h~~-~V~sla~---spdG~lLatgs~Dg~IrIwD~r------------------------------ 198 (493)
T PTZ00421 153 WDVERGKAVEVIKCHSD-QITSLEW---NLDGSLLCTTSKDKKLNIIDPR------------------------------ 198 (493)
T ss_pred EECCCCeEEEEEcCCCC-ceEEEEE---ECCCCEEEEecCCCEEEEEECC------------------------------
Confidence 99999988888876654 4677777 5789999999999999999998
Q ss_pred cccceeeEEEEecCCCc-EEEEEEcCCCCEEEEEe----CCCeEEEEecccCcccCCCCceeeeceEEe-ccceeEEEEE
Q 003423 242 QQHTAVNLFRLVGHEGS-IFRIEWSSCGSKLVSVS----DDRSARIWEVRAEYWKDSDSIEEVGSSVLY-GHNARVWDCC 315 (821)
Q Consensus 242 ~~~~~~~~~~~~~h~~~-I~~l~~s~~~~~l~s~s----~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~v~ 315 (821)
+...+..+.+|.+. +..+.|.+++..+++++ .|++|++||+++... . + .... .+...+....
T Consensus 199 ---sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~-----p--~--~~~~~d~~~~~~~~~ 266 (493)
T PTZ00421 199 ---DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS-----P--Y--STVDLDQSSALFIPF 266 (493)
T ss_pred ---CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-----c--e--eEeccCCCCceEEEE
Confidence 55677788899875 45678999888887765 479999999987543 1 1 1222 2233455556
Q ss_pred Ec--CCEEEEEe-CCCeEEEEcC-CCceeeEeecccCCCeEEEEEecC
Q 003423 316 LT--DSFIITAG-EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (821)
Q Consensus 316 ~~--~~~l~s~~-~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~ 359 (821)
|+ ++++++++ .|+.|++||+ +++.+.........++..+++.|.
T Consensus 267 ~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 267 FDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 65 47788877 5999999999 666665554443335778888874
No 113
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=1.6e-22 Score=186.92 Aligned_cols=286 Identities=13% Similarity=0.231 Sum_probs=209.7
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCC------------C------eeeeEEEeeccccEEeEEeccc
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA------------G------TLIRPFQVFHGIRLHGISCNFI 76 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t------------~------~~~~~~~~~~~~~i~~i~~~~~ 76 (821)
|.+++.|-+|+ || +.++++|+ |..|+|.|++. | -+++++-. +...|..+.|+|.
T Consensus 111 HK~~cR~aafs--~D----G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD-H~devn~l~FHPr 183 (430)
T KOG0640|consen 111 HKSPCRAAAFS--PD----GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD-HVDEVNDLDFHPR 183 (430)
T ss_pred cccceeeeeeC--CC----CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh-ccCcccceeecch
Confidence 88999999999 99 78999988 89999999861 1 12344433 3347999999976
Q ss_pred cCCCCCCccceeeEEE-EEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC
Q 003423 77 NCTEGSVSTRVTFEVA-LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (821)
Q Consensus 77 ~~~~~~~~~~~~~~l~-~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~ 155 (821)
. .+++ .+.|++|++||...... .+..+.++ ...+|.++.|+| .|.+|++|..
T Consensus 184 e-----------~ILiS~srD~tvKlFDfsK~sa------------KrA~K~~q-d~~~vrsiSfHP---sGefllvgTd 236 (430)
T KOG0640|consen 184 E-----------TILISGSRDNTVKLFDFSKTSA------------KRAFKVFQ-DTEPVRSISFHP---SGEFLLVGTD 236 (430)
T ss_pred h-----------heEEeccCCCeEEEEecccHHH------------HHHHHHhh-ccceeeeEeecC---CCceEEEecC
Confidence 2 3444 34589999999975431 11222232 346799999999 9999999999
Q ss_pred CCcEEEEEccCCceeEEEc--cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCC
Q 003423 156 DNSIRVWDISNSSIILEVH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (821)
Q Consensus 156 d~~i~iwd~~~~~~~~~~~--~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 233 (821)
+.++++||+.+-++..... ..+...+.++.+ ++.+.+-++|+.||.|++||-.
T Consensus 237 Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y---s~t~~lYvTaSkDG~IklwDGV---------------------- 291 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY---SSTGSLYVTASKDGAIKLWDGV---------------------- 291 (430)
T ss_pred CCceeEEeccceeEeeecCcccccccceeEEEe---cCCccEEEEeccCCcEEeeccc----------------------
Confidence 9999999999988866543 223344556665 6889999999999999999987
Q ss_pred cceeeecccccceeeEEEEe-cCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeE
Q 003423 234 FKCFKLQDQQHTAVNLFRLV-GHEG-SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (821)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~-~h~~-~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i 311 (821)
+.+++.++. +|.+ .|.+..|..+++++++.+.|..+++|.+.+++. ++...-+-..+...--
T Consensus 292 -----------S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~-----l~~YtGAg~tgrq~~r 355 (430)
T KOG0640|consen 292 -----------SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM-----LKEYTGAGTTGRQKHR 355 (430)
T ss_pred -----------cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce-----EEEEecCCcccchhhh
Confidence 556665553 6765 589999999999999999999999999999876 4322111111111222
Q ss_pred EEEEEc--CCEEEEEe-CCCeEEEEcC-CCceeeE-eecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 312 WDCCLT--DSFIITAG-EDCTCRVWGS-DGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 312 ~~v~~~--~~~l~s~~-~dg~i~iwd~-~~~~~~~-~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
+...|+ .++++.-. ..+.+.-||. ++..+.. -.+|.+ .++.+.-+|.+.-+.|++.|..+++|--
T Consensus 356 tqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~-a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 356 TQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNG-AVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCC-CceEEEeCCCCCceeeecccceeeeeee
Confidence 344565 46666555 3478999998 3333333 346877 6999999999999999999999999964
No 114
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2.2e-21 Score=180.15 Aligned_cols=269 Identities=18% Similarity=0.177 Sum_probs=202.8
Q ss_pred eeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCC
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~ 97 (821)
..|+.+.|+ |. .+.||+++=||++++||....++...++ +..++.+++|.+. ...++..-|+
T Consensus 14 d~IS~v~f~--~~---~~~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d~-----------~~~~~G~~dg 75 (323)
T KOG1036|consen 14 DGISSVKFS--PS---SSDLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFADE-----------STIVTGGLDG 75 (323)
T ss_pred hceeeEEEc--Cc---CCcEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccCC-----------ceEEEeccCc
Confidence 459999999 87 3445555559999999999887666665 3457999998843 2355555699
Q ss_pred eEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCc
Q 003423 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (821)
Q Consensus 98 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~ 177 (821)
.|+.+|+..+. ...+..|...|+|+.+++ ....+++|+-|++|++||.........+....
T Consensus 76 ~vr~~Dln~~~----------------~~~igth~~~i~ci~~~~---~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k 136 (323)
T KOG1036|consen 76 QVRRYDLNTGN----------------EDQIGTHDEGIRCIEYSY---EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK 136 (323)
T ss_pred eEEEEEecCCc----------------ceeeccCCCceEEEEeec---cCCeEEEcccCccEEEEeccccccccccccCc
Confidence 99999999654 345668999999999998 77889999999999999998755555554444
Q ss_pred ceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCC
Q 003423 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (821)
Q Consensus 178 ~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 257 (821)
-+|++.. .++.|++|+.+..+.+||+++.+... ...-..-+-
T Consensus 137 --kVy~~~v-----~g~~LvVg~~~r~v~iyDLRn~~~~~-------------------------------q~reS~lky 178 (323)
T KOG1036|consen 137 --KVYCMDV-----SGNRLVVGTSDRKVLIYDLRNLDEPF-------------------------------QRRESSLKY 178 (323)
T ss_pred --eEEEEec-----cCCEEEEeecCceEEEEEcccccchh-------------------------------hhcccccee
Confidence 4777754 67899999999999999998211100 111122345
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccc---------eeEEEEEEcC--CEEEEEeC
Q 003423 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---------ARVWDCCLTD--SFIITAGE 326 (821)
Q Consensus 258 ~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~---------~~i~~v~~~~--~~l~s~~~ 326 (821)
.+.||++.|++.-.+.++-||.|-+=.+..... .+..+ ..+.-|. -+|.+++|+| ..|+|||.
T Consensus 179 qtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~-----~~skk-yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs 252 (323)
T KOG1036|consen 179 QTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEE-----AQSKK-YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGS 252 (323)
T ss_pred EEEEEEEecCCCceEEEeecceEEEEccCCchH-----Hhhhc-eeEEeeecccCCceEEEEeceeEeccccceEEecCC
Confidence 688999999888889999999998877666522 11111 2444443 3689999996 78999999
Q ss_pred CCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeC
Q 003423 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (821)
Q Consensus 327 dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~ 368 (821)
||.|.+||+ ..+.+..+..... .|.+++|+.+|..||+++.
T Consensus 253 DG~V~~Wd~~~rKrl~q~~~~~~-SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 253 DGIVNIWDLFNRKRLKQLAKYET-SISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CceEEEccCcchhhhhhccCCCC-ceEEEEeccCCCeEEEEec
Confidence 999999999 6677777877755 5999999999999999974
No 115
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=182.05 Aligned_cols=314 Identities=17% Similarity=0.231 Sum_probs=206.3
Q ss_pred eeeccce-eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCee--eeEEEe-eccccEEeEEeccccCCCCCC
Q 003423 9 WRLDVGQ-YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTL--IRPFQV-FHGIRLHGISCNFINCTEGSV 83 (821)
Q Consensus 9 w~~~~~~-~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~--~~~~~~-~~~~~i~~i~~~~~~~~~~~~ 83 (821)
|++...+ |.+.||+++|+ .| +.+|++.. |+.|+||++..-+. .+.++. -+....+.+.|.|++
T Consensus 77 l~~~~LKgH~~~vt~~~Fs--Sd----GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc------ 144 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFS--SD----GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDC------ 144 (420)
T ss_pred hhhhhhhccCCceeeeEEc--CC----CceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCc------
Confidence 4444433 88999999999 87 67777765 89999999986322 111111 011245667788664
Q ss_pred ccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEE
Q 003423 84 STRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (821)
Q Consensus 84 ~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd 163 (821)
+ ...+.+-.+..+++|.+..... .+. +...+...-..--+.|+-.|..+-... ++.+|++|+.|..|.+|+
T Consensus 145 -~--s~vv~~~~g~~l~vyk~~K~~d-G~~--~~~~v~~D~~~f~~kh~v~~i~iGiA~---~~k~imsas~dt~i~lw~ 215 (420)
T KOG2096|consen 145 -K--SVVVSVKRGNKLCVYKLVKKTD-GSG--SHHFVHIDNLEFERKHQVDIINIGIAG---NAKYIMSASLDTKICLWD 215 (420)
T ss_pred -c--eEEEEEccCCEEEEEEeeeccc-CCC--CcccccccccccchhcccceEEEeecC---CceEEEEecCCCcEEEEe
Confidence 1 2344455689999999885541 110 000011111223345666777777766 889999999999999999
Q ss_pred ccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccc
Q 003423 164 ISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (821)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (821)
+. |+.+..+...... .+.++. +|+|.+||+++..-.++||.+-..+ ++. -
T Consensus 216 lk-Gq~L~~idtnq~~-n~~aav---SP~GRFia~~gFTpDVkVwE~~f~k-----dG~--------------------f 265 (420)
T KOG2096|consen 216 LK-GQLLQSIDTNQSS-NYDAAV---SPDGRFIAVSGFTPDVKVWEPIFTK-----DGT--------------------F 265 (420)
T ss_pred cC-Cceeeeecccccc-ccceee---CCCCcEEEEecCCCCceEEEEEecc-----Ccc--------------------h
Confidence 98 8888777654432 223333 7999999999999999999976111 000 0
Q ss_pred cceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceee--eceEEeccceeEEEEEEcC-CE
Q 003423 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV--GSSVLYGHNARVWDCCLTD-SF 320 (821)
Q Consensus 244 ~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~h~~~i~~v~~~~-~~ 320 (821)
.+...++.++||...|..++|+++.++++|.|.||++||||++-.-....+ .+.+ .+..+..-.+.-..+..+| ..
T Consensus 266 qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD-pk~Lk~g~~pl~aag~~p~RL~lsP~g~ 344 (420)
T KOG2096|consen 266 QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD-PKILKEGSAPLHAAGSEPVRLELSPSGD 344 (420)
T ss_pred hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC-chHhhcCCcchhhcCCCceEEEeCCCCc
Confidence 134567889999999999999999999999999999999998754221111 1111 0011111222223455553 34
Q ss_pred EEEEeCCCeEEEEcC-CCceeeEee-cccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 003423 321 IITAGEDCTCRVWGS-DGKQLKMIK-EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (821)
Q Consensus 321 l~s~~~dg~i~iwd~-~~~~~~~~~-~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd 376 (821)
++..+...+++++.. +|+....+. .|.. .|.+++|+++|++++|+| |..+++..
T Consensus 345 ~lA~s~gs~l~~~~se~g~~~~~~e~~h~~-~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 345 SLAVSFGSDLKVFASEDGKDYPELEDIHST-TISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EEEeecCCceEEEEcccCccchhHHHhhcC-ceeeEEecCCCcEEeeec-ceeeeeec
Confidence 555566678999988 666555554 3555 699999999999999998 56677765
No 116
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.89 E-value=3.9e-22 Score=184.33 Aligned_cols=297 Identities=11% Similarity=0.150 Sum_probs=206.8
Q ss_pred eeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC------------------ceeEEEccCcceeEEEEe
Q 003423 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS------------------SIILEVHSPERCLLYSMK 185 (821)
Q Consensus 124 ~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~------------------~~~~~~~~~~~~~~~s~~ 185 (821)
....+..|+.++.+.+|+| ||.++|||+.|..|+|.|++.. -.++++-.|.. .+..+.
T Consensus 104 Et~ylt~HK~~cR~aafs~---DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d-evn~l~ 179 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSP---DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD-EVNDLD 179 (430)
T ss_pred ceEEEeecccceeeeeeCC---CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC-ccccee
Confidence 3456778999999999999 9999999999999999999721 01223323322 234455
Q ss_pred eccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEc
Q 003423 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS 265 (821)
Q Consensus 186 ~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 265 (821)
|+ |....|++|+.|++|+++|.... .-.+....+ ....+|.+|.|+
T Consensus 180 FH---Pre~ILiS~srD~tvKlFDfsK~------------------------------saKrA~K~~-qd~~~vrsiSfH 225 (430)
T KOG0640|consen 180 FH---PRETILISGSRDNTVKLFDFSKT------------------------------SAKRAFKVF-QDTEPVRSISFH 225 (430)
T ss_pred ec---chhheEEeccCCCeEEEEecccH------------------------------HHHHHHHHh-hccceeeeEeec
Confidence 64 67889999999999999998711 011122222 245689999999
Q ss_pred CCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeE
Q 003423 266 SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKM 342 (821)
Q Consensus 266 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~ 342 (821)
|.|.+|+.|.+-.++|+||+.+-++ .-.. ..-.+|+..|+++.++ ++..+|++.||.|++||- .++++.+
T Consensus 226 PsGefllvgTdHp~~rlYdv~T~Qc-----fvsa--nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t 298 (430)
T KOG0640|consen 226 PSGEFLLVGTDHPTLRLYDVNTYQC-----FVSA--NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRT 298 (430)
T ss_pred CCCceEEEecCCCceeEEeccceeE-----eeec--CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHH
Confidence 9999999999999999999999654 2111 2345799999999998 689999999999999997 8899988
Q ss_pred ee-cccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCc
Q 003423 343 IK-EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSE 420 (821)
Q Consensus 343 ~~-~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (821)
+. .|.+..|.+..|..+++++++.|.|..+++|.+. +++++.+.+....- . ..
T Consensus 299 ~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tg--------------r-----------q~ 353 (430)
T KOG0640|consen 299 IGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTG--------------R-----------QK 353 (430)
T ss_pred HHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCccc--------------c-----------hh
Confidence 75 5666679999999999999999999999999994 45555554431000 0 00
Q ss_pred ceEEEEeecCCeEEEEe--cCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEE
Q 003423 421 YVRCLHLTSEDTLYIAT--NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTI 498 (821)
Q Consensus 421 ~i~~l~f~~~~~~l~~~--~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i 498 (821)
.-+...|+....+++.- ..+.+. -|+.++..-..+....+++.+.++.-++ ...-+.+++.|-.+++
T Consensus 354 ~rtqAvFNhtEdyVl~pDEas~slc---sWdaRtadr~~l~slgHn~a~R~i~HSP--------~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 354 HRTQAVFNHTEDYVLFPDEASNSLC---SWDARTADRVALLSLGHNGAVRWIVHSP--------VEPAFMTCSDDFRARF 422 (430)
T ss_pred hhhhhhhcCccceEEccccccCcee---eccccchhhhhhcccCCCCCceEEEeCC--------CCCceeeecccceeee
Confidence 01111222222222211 112233 4444443333444555666666665544 4477889999999999
Q ss_pred EEe
Q 003423 499 VRV 501 (821)
Q Consensus 499 ~~~ 501 (821)
|.-
T Consensus 423 Wyr 425 (430)
T KOG0640|consen 423 WYR 425 (430)
T ss_pred eee
Confidence 974
No 117
>PTZ00420 coronin; Provisional
Probab=99.89 E-value=1.2e-20 Score=202.68 Aligned_cols=253 Identities=10% Similarity=0.075 Sum_probs=179.9
Q ss_pred CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCcccccc
Q 003423 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNL 122 (821)
Q Consensus 43 ~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~ 122 (821)
.+.|++|+......+..+..|.+ .|.+++|+|.. . ..+++++.|+.|+||++......... ..
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~-~V~~lafsP~~----~-----~lLASgS~DgtIrIWDi~t~~~~~~~-------i~ 115 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTS-SILDLQFNPCF----S-----EILASGSEDLTIRVWEIPHNDESVKE-------IK 115 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCC-CEEEEEEcCCC----C-----CEEEEEeCCCeEEEEECCCCCccccc-------cc
Confidence 57899999888778888887665 79999999651 1 24555566899999999753210000 01
Q ss_pred ceeeeccCCCCcEEEEEEeecCCCCCE-EEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee
Q 003423 123 SLVQSLPRLSHWVFDVCFLKVCNGNRS-LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (821)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (821)
.....+.+|...|.+++|+| ++.. |++|+.|++|+|||+.+++.+..+..+ ..+.++.| ++++.+|++++.
T Consensus 116 ~p~~~L~gH~~~V~sVaf~P---~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~--~~V~Slsw---spdG~lLat~s~ 187 (568)
T PTZ00420 116 DPQCILKGHKKKISIIDWNP---MNYYIMCSSGFDSFVNIWDIENEKRAFQINMP--KKLSSLKW---NIKGNLLSGTCV 187 (568)
T ss_pred cceEEeecCCCcEEEEEECC---CCCeEEEEEeCCCeEEEEECCCCcEEEEEecC--CcEEEEEE---CCCCCEEEEEec
Confidence 23456789999999999999 7764 578999999999999999877666533 34677777 578999999999
Q ss_pred CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEE-----EEEcCCCCEEEEEeC
Q 003423 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFR-----IEWSSCGSKLVSVSD 276 (821)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~-----l~~s~~~~~l~s~s~ 276 (821)
|+.|+|||++ +...+.++.+|.+.+.. ..|++++.+|+|++.
T Consensus 188 D~~IrIwD~R---------------------------------sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~ 234 (568)
T PTZ00420 188 GKHMHIIDPR---------------------------------KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGF 234 (568)
T ss_pred CCEEEEEECC---------------------------------CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEc
Confidence 9999999999 56677888899986544 345688899999887
Q ss_pred C----CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCceeeEeecc-cCC
Q 003423 277 D----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEH-IGR 349 (821)
Q Consensus 277 D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~h-~~~ 349 (821)
| ++|+|||++.... . +....+..+.+.+...... +.++++|..|++|++|++....+..+... ...
T Consensus 235 d~~~~R~VkLWDlr~~~~-----p--l~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~ 307 (568)
T PTZ00420 235 SKNNMREMKLWDLKNTTS-----A--LVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCS 307 (568)
T ss_pred CCCCccEEEEEECCCCCC-----c--eEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCC
Confidence 7 4899999986322 1 1001222233333222222 56888999999999999943334433322 223
Q ss_pred CeEEEEEecCC
Q 003423 350 GIWRCLYDSLS 360 (821)
Q Consensus 350 ~i~~l~~~~~~ 360 (821)
++.+++|.|..
T Consensus 308 p~~g~~f~Pkr 318 (568)
T PTZ00420 308 PFRSFGFLPKQ 318 (568)
T ss_pred CccceEEcccc
Confidence 67888998864
No 118
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9.9e-20 Score=160.83 Aligned_cols=285 Identities=15% Similarity=0.189 Sum_probs=212.3
Q ss_pred eeeEEEEEeccCCCCCCcceEEeec-CCeEEEEEC------CCC--------eeeeEEEeeccccEEeEEeccccCCCCC
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDL------EAG--------TLIRPFQVFHGIRLHGISCNFINCTEGS 82 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~------~t~--------~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 82 (821)
..|.+++|. |. +.+.++|+ ..+.+|-.. ..+ ..+..-..++...|.+.+|+|.+
T Consensus 33 qairav~fh--p~----g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g----- 101 (350)
T KOG0641|consen 33 QAIRAVAFH--PA----GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG----- 101 (350)
T ss_pred hheeeEEec--CC----CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc-----
Confidence 458899999 98 67888887 466666543 221 11222223455689999999775
Q ss_pred CccceeeEEEEE-cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCC-CCCEEEEEEC-CCcE
Q 003423 83 VSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN-GNRSLAIGCS-DNSI 159 (821)
Q Consensus 83 ~~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~-~~~~l~t~~~-d~~i 159 (821)
.+++++ .|++|++...+.+..... -....+.-|++.|.+++|..... .+..|++++. |..|
T Consensus 102 ------eliatgsndk~ik~l~fn~dt~~~~----------g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 102 ------ELIATGSNDKTIKVLPFNADTCNAT----------GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred ------CeEEecCCCceEEEEeccccccccc----------CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 345444 479999988775431111 12334567899999999986322 3457777653 6667
Q ss_pred EEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeee
Q 003423 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (821)
Q Consensus 160 ~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (821)
.+=|..+|+.+..+.+|...++--. +.++..+++|+.|.+|++||++
T Consensus 166 y~tdc~~g~~~~a~sghtghilaly-----swn~~m~~sgsqdktirfwdlr---------------------------- 212 (350)
T KOG0641|consen 166 YITDCGRGQGFHALSGHTGHILALY-----SWNGAMFASGSQDKTIRFWDLR---------------------------- 212 (350)
T ss_pred EEeecCCCCcceeecCCcccEEEEE-----EecCcEEEccCCCceEEEEeee----------------------------
Confidence 7778888999998888887654222 2578899999999999999998
Q ss_pred cccccceeeEEEEe--c-----CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEE
Q 003423 240 QDQQHTAVNLFRLV--G-----HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (821)
Q Consensus 240 ~~~~~~~~~~~~~~--~-----h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 312 (821)
-..++.++. - ....|.+++..|.|++|++|-.|....+||++.++. + ..+..|.+.|.
T Consensus 213 -----v~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~-----i-----q~f~phsadir 277 (350)
T KOG0641|consen 213 -----VNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM-----I-----QRFHPHSADIR 277 (350)
T ss_pred -----ccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce-----e-----eeeCCCcccee
Confidence 222222221 1 235799999999999999999999999999999876 5 58889999999
Q ss_pred EEEEcC--CEEEEEeCCCeEEEEcCCCce-----eeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 313 DCCLTD--SFIITAGEDCTCRVWGSDGKQ-----LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 313 ~v~~~~--~~l~s~~~dg~i~iwd~~~~~-----~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
++.|+| .++++++.|..|++=|+.|.. +.....|..+ +..+.|+|+.--+++.+.|.++.+|-++
T Consensus 278 ~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk-~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 278 CVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK-AIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc-eEEEEecCccceeeeccCcceEEEeccC
Confidence 999995 799999999999999997643 3445668885 6678999999999999999999999763
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.2e-21 Score=175.33 Aligned_cols=262 Identities=16% Similarity=0.233 Sum_probs=191.7
Q ss_pred ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc----CCEEEEEeCCC
Q 003423 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDC 328 (821)
Q Consensus 253 ~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~----~~~l~s~~~dg 328 (821)
..|++.|..+...-.|++||||+.|++|||+.++.... .+.+ ..+.||.++||.++|. +.+|++++.||
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-----s~ll--~~L~Gh~GPVwqv~wahPk~G~iLAScsYDg 80 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-----SKLL--AELTGHSGPVWKVAWAHPKFGTILASCSYDG 80 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-----ceee--eEecCCCCCeeEEeecccccCcEeeEeecCc
Confidence 47999999998888899999999999999999988654 3333 7999999999999997 58999999999
Q ss_pred eEEEEcCCC---ceeeEeecccCCCeEEEEEecC--CCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEe
Q 003423 329 TCRVWGSDG---KQLKMIKEHIGRGIWRCLYDSL--SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSI 403 (821)
Q Consensus 329 ~i~iwd~~~---~~~~~~~~h~~~~i~~l~~~~~--~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (821)
.|.||.-++ ........|.. .|.+++|-|. |-.|++++.||.|.+.+++..-.
T Consensus 81 kVIiWke~~g~w~k~~e~~~h~~-SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~--------------------- 138 (299)
T KOG1332|consen 81 KVIIWKEENGRWTKAYEHAAHSA-SVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG--------------------- 138 (299)
T ss_pred eEEEEecCCCchhhhhhhhhhcc-cceeecccccccceEEEEeeCCCcEEEEEEcCCCC---------------------
Confidence 999999843 34445667887 6999999875 57899999999999999854200
Q ss_pred ecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCC
Q 003423 404 KIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGI 483 (821)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~ 483 (821)
-........|.-.++++++.|.. ..|.+. +... . ..
T Consensus 139 -----w~t~ki~~aH~~GvnsVswapa~------~~g~~~-----~~~~-----------~-----------------~~ 174 (299)
T KOG1332|consen 139 -----WTTSKIVFAHEIGVNSVSWAPAS------APGSLV-----DQGP-----------A-----------------AK 174 (299)
T ss_pred -----ccchhhhhccccccceeeecCcC------CCcccc-----ccCc-----------c-----------------cc
Confidence 00111223455567788877641 111111 0000 0 11
Q ss_pred CcEEEEecCCccEEEEEecCCCC--------CCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCC
Q 003423 484 DDWVALGDGKGNMTIVRVVGDVH--------TPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (821)
Q Consensus 484 ~~~l~~g~~~g~i~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 555 (821)
.+.+++|+.|..++||+.++..- +...+..++|.|.. .....++++++.||++.||.....
T Consensus 175 ~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~-----------gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 175 VKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSV-----------GLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred cceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcccc-----------CCCceeeEEecCCCcEEEEEecCc
Confidence 26789999999999999887422 33444455555432 123468999999999999987733
Q ss_pred CCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecC
Q 003423 556 FSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (821)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~ 610 (821)
.......++..| ...+..+.||..|++|+.++.|..|.+|.-+
T Consensus 244 --------~e~wk~tll~~f----~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 244 --------YEPWKKTLLEEF----PDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred --------cCcccccccccC----CcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 123333555555 7889999999999999999999999999744
No 120
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=9.7e-21 Score=204.62 Aligned_cols=294 Identities=15% Similarity=0.162 Sum_probs=221.8
Q ss_pred eeeeEEEEEeccCCCCCCcceEEeec---CCeEEEEECCC------------CeeeeEEEeeccccEEeEEeccccCCCC
Q 003423 17 LGEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEA------------GTLIRPFQVFHGIRLHGISCNFINCTEG 81 (821)
Q Consensus 17 ~~~Vt~l~~~~~p~~~~~~~~l~~g~---~~~i~iwd~~t------------~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 81 (821)
...|.++..+ || +..+++|. |+.++||+.+. .+.+.+...|.+ .|.++.|++++
T Consensus 13 ~~~IfSIdv~--pd----g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~-sv~CVR~S~dG---- 81 (942)
T KOG0973|consen 13 EKSIFSIDVH--PD----GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDG-SVNCVRFSPDG---- 81 (942)
T ss_pred CeeEEEEEec--CC----ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccC-ceeEEEECCCC----
Confidence 3458999999 99 66666654 67888999763 233455555444 79999999775
Q ss_pred CCccceeeEEEEEc-CCeEEEEEEeecCCCCCCCCC---ccc-cccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECC
Q 003423 82 SVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQP---ETC-VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156 (821)
Q Consensus 82 ~~~~~~~~~l~~~g-~~~v~i~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d 156 (821)
.++|.++ |+.|.||...... ....|.. ..+ -+++....+.+|+..|.+++|+| ++.+||+++.|
T Consensus 82 -------~~lAsGSDD~~v~iW~~~~~~-~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp---~~~~lvS~s~D 150 (942)
T KOG0973|consen 82 -------SYLASGSDDRLVMIWERAEIG-SGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP---DDSLLVSVSLD 150 (942)
T ss_pred -------CeEeeccCcceEEEeeecccC-CcccccccccccccceeeEEEEEecCCCccceeccCC---CccEEEEeccc
Confidence 3666555 6889999988411 1111111 011 25778999999999999999999 99999999999
Q ss_pred CcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcce
Q 003423 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC 236 (821)
Q Consensus 157 ~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (821)
++|.|||..+.+.+..+.+|..- +-.+.| +|-+.++|+-+.|++|+||+..
T Consensus 151 nsViiwn~~tF~~~~vl~~H~s~-VKGvs~---DP~Gky~ASqsdDrtikvwrt~------------------------- 201 (942)
T KOG0973|consen 151 NSVIIWNAKTFELLKVLRGHQSL-VKGVSW---DPIGKYFASQSDDRTLKVWRTS------------------------- 201 (942)
T ss_pred ceEEEEccccceeeeeeeccccc-ccceEE---CCccCeeeeecCCceEEEEEcc-------------------------
Confidence 99999999999888888877653 333334 5889999999999999999976
Q ss_pred eeecccccceeeEEEEecCC------CcEEEEEEcCCCCEEEEEeC----CCeEEEEecccCcccCCCCceeeeceEEec
Q 003423 237 FKLQDQQHTAVNLFRLVGHE------GSIFRIEWSSCGSKLVSVSD----DRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (821)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~h~------~~I~~l~~s~~~~~l~s~s~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 306 (821)
.....+.+.++. .-+..+.|||||++|++.-. -.++.|.+-.+.+. . ..+.|
T Consensus 202 --------dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~------~----~~LvG 263 (942)
T KOG0973|consen 202 --------DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV------D----KDLVG 263 (942)
T ss_pred --------cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee------e----eeeec
Confidence 333344444433 34678999999999998643 23566665544332 1 58999
Q ss_pred cceeEEEEEEcC-------C------------EEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEE
Q 003423 307 HNARVWDCCLTD-------S------------FIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366 (821)
Q Consensus 307 h~~~i~~v~~~~-------~------------~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg 366 (821)
|.+++.+++|+| . .+++|+.|++|.||.. ..+++...+.-..+.|..++|+|||..|+.+
T Consensus 264 H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~Lfac 343 (942)
T KOG0973|consen 264 HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFAC 343 (942)
T ss_pred CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEE
Confidence 999999999983 2 6789999999999998 5566666555555579999999999999999
Q ss_pred eCCCcEEEEEcCC
Q 003423 367 GFDSAIKVHQFQA 379 (821)
Q Consensus 367 ~~dg~I~iwd~~~ 379 (821)
+.||+|.+..++.
T Consensus 344 S~DGtV~~i~Fee 356 (942)
T KOG0973|consen 344 SLDGTVALIHFEE 356 (942)
T ss_pred ecCCeEEEEEcch
Confidence 9999999999854
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=1.2e-21 Score=192.31 Aligned_cols=278 Identities=13% Similarity=0.219 Sum_probs=220.4
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCC---eeeeEEEee-ccccEEeEEeccccCCCCCCccceeeEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG---TLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEV 91 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~---~~~~~~~~~-~~~~i~~i~~~~~~~~~~~~~~~~~~~l 91 (821)
|-.-|.|+..| .. .+.+.+|.-|-|+|||+... .++..+... ..+.|..+...+++ +.|
T Consensus 418 HGEvVcAvtIS--~~----trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg-----------rtL 480 (705)
T KOG0639|consen 418 HGEVVCAVTIS--NP----TRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG-----------RTL 480 (705)
T ss_pred cCcEEEEEEec--CC----cceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCC-----------ceE
Confidence 55668888888 44 68999999999999999742 345555543 45568888888664 355
Q ss_pred EEEc-CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCcee
Q 003423 92 ALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (821)
Q Consensus 92 ~~~g-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~ 170 (821)
+++| ..++.|||+.... ......+....-..++++.+| |.+.+.+|+.||.|+|||+.+...+
T Consensus 481 ivGGeastlsiWDLAapT-------------prikaeltssapaCyALa~sp---DakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPT-------------PRIKAELTSSAPACYALAISP---DAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred EeccccceeeeeeccCCC-------------cchhhhcCCcchhhhhhhcCC---ccceeeeeccCCcEEEEEcccceee
Confidence 5555 5899999998654 223334444445678899999 9999999999999999999999999
Q ss_pred EEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEE
Q 003423 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (821)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (821)
+++++|... +.++.+ +.|+..|.+|+.|++|+.||++ ++..+.
T Consensus 545 rqfqGhtDG-ascIdi---s~dGtklWTGGlDntvRcWDlr---------------------------------egrqlq 587 (705)
T KOG0639|consen 545 RQFQGHTDG-ASCIDI---SKDGTKLWTGGLDNTVRCWDLR---------------------------------EGRQLQ 587 (705)
T ss_pred ecccCCCCC-ceeEEe---cCCCceeecCCCccceeehhhh---------------------------------hhhhhh
Confidence 999988653 223333 5899999999999999999998 333332
Q ss_pred EEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCC
Q 003423 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC 328 (821)
Q Consensus 251 ~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg 328 (821)
.. .....|+++..+|++.+|+.|-.++.+.|-.....+. ..+..|.+-|.++.|. +.++++.|.|+
T Consensus 588 qh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-----------yqlhlheScVLSlKFa~cGkwfvStGkDn 655 (705)
T KOG0639|consen 588 QH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-----------YQLHLHESCVLSLKFAYCGKWFVSTGKDN 655 (705)
T ss_pred hh-hhhhhheecccCCCccceeeecccCcEEEEecCCccc-----------eeecccccEEEEEEecccCceeeecCchh
Confidence 21 2357899999999999999999999999988877655 6888899999999998 89999999999
Q ss_pred eEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 329 TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 329 ~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
.+..|.. -|..+...+... .|.++.++.+.++|+||+.|..-.+|.+
T Consensus 656 lLnawrtPyGasiFqskE~S--sVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 656 LLNAWRTPYGASIFQSKESS--SVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred hhhhccCccccceeeccccC--cceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999998 676666665443 5999999999999999999998888865
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.7e-21 Score=174.40 Aligned_cols=236 Identities=21% Similarity=0.280 Sum_probs=181.0
Q ss_pred eEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc
Q 003423 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 89 ~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
++.+++.|++|+|+...... ...++..|.||.++|..++|.. ..-|.+||+|+.||.|.||.-+++.
T Consensus 25 rlATcsSD~tVkIf~v~~n~------------~s~ll~~L~Gh~GPVwqv~wah-Pk~G~iLAScsYDgkVIiWke~~g~ 91 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNNG------------QSKLLAELTGHSGPVWKVAWAH-PKFGTILASCSYDGKVIIWKEENGR 91 (299)
T ss_pred eeeeecCCccEEEEEEcCCC------------CceeeeEecCCCCCeeEEeecc-cccCcEeeEeecCceEEEEecCCCc
Confidence 56667789999999998653 1367899999999999999963 1368899999999999999988874
Q ss_pred eeE--EEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccce
Q 003423 169 IIL--EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (821)
Q Consensus 169 ~~~--~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (821)
-.+ +...|. ..+.++++.+. .-+..||.|+.||.|.|.+++.. ...
T Consensus 92 w~k~~e~~~h~-~SVNsV~waph-eygl~LacasSDG~vsvl~~~~~------------------------------g~w 139 (299)
T KOG1332|consen 92 WTKAYEHAAHS-ASVNSVAWAPH-EYGLLLACASSDGKVSVLTYDSS------------------------------GGW 139 (299)
T ss_pred hhhhhhhhhhc-ccceeeccccc-ccceEEEEeeCCCcEEEEEEcCC------------------------------CCc
Confidence 322 222332 33556665443 46889999999999999998821 011
Q ss_pred eeEEEEecCCCcEEEEEEcCC---C-----------CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEE
Q 003423 247 VNLFRLVGHEGSIFRIEWSSC---G-----------SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (821)
Q Consensus 247 ~~~~~~~~h~~~I~~l~~s~~---~-----------~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 312 (821)
........|+-.|++++|.|. | +.|+||+.|..|+||+...... ..+ .++.+|...|.
T Consensus 140 ~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w-----~~e---~~l~~H~dwVR 211 (299)
T KOG1332|consen 140 TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW-----KLE---RTLEGHKDWVR 211 (299)
T ss_pred cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch-----hhh---hhhhhcchhhh
Confidence 112233589999999999985 4 5699999999999999988643 111 46899999999
Q ss_pred EEEEcC------CEEEEEeCCCeEEEEcCCC---c-eeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 313 DCCLTD------SFIITAGEDCTCRVWGSDG---K-QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 313 ~v~~~~------~~l~s~~~dg~i~iwd~~~---~-~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
.++|.| .+++++++||++.||..+. . ....+..... .++.+.|+..|+.|+.++.|+.+.+|.-+
T Consensus 212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~-~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred hhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCc-ceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 999984 5899999999999998732 1 1222333344 69999999999999999999999999764
No 123
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=3.6e-21 Score=188.18 Aligned_cols=259 Identities=17% Similarity=0.261 Sum_probs=192.7
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCC----------eeeeEEEeeccccEEeEEeccccCCCCCCc
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----------TLIRPFQVFHGIRLHGISCNFINCTEGSVS 84 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~----------~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~ 84 (821)
|.+.|+.+..- |. ...++++.. ++.|.|||...- .+-.++..|+. .-.+++|++.. .
T Consensus 123 h~gEVnRaRym--PQ---np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-eg~glsWn~~~-----~- 190 (422)
T KOG0264|consen 123 HDGEVNRARYM--PQ---NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-EGYGLSWNRQQ-----E- 190 (422)
T ss_pred CCccchhhhhC--CC---CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-ccccccccccc-----c-
Confidence 66778888777 76 233444444 799999998642 12226667666 35678887652 1
Q ss_pred cceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEc
Q 003423 85 TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (821)
Q Consensus 85 ~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~ 164 (821)
-.++.++.++.|++||+....... ....+...+.+|.+.|.+++|+|. +..++++++.|+.+.|||+
T Consensus 191 ---g~Lls~~~d~~i~lwdi~~~~~~~--------~~~~p~~~~~~h~~~VeDV~~h~~--h~~lF~sv~dd~~L~iwD~ 257 (422)
T KOG0264|consen 191 ---GTLLSGSDDHTICLWDINAESKED--------KVVDPKTIFSGHEDVVEDVAWHPL--HEDLFGSVGDDGKLMIWDT 257 (422)
T ss_pred ---eeEeeccCCCcEEEEeccccccCC--------ccccceEEeecCCcceehhhcccc--chhhheeecCCCeEEEEEc
Confidence 245555668999999998654211 124567788999999999999993 6678999999999999999
Q ss_pred cCC--ceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccc
Q 003423 165 SNS--SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (821)
Q Consensus 165 ~~~--~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (821)
+++ +.......|. ..+.+++|-+. ++.+||+|+.|++|.+||++
T Consensus 258 R~~~~~~~~~~~ah~-~~vn~~~fnp~--~~~ilAT~S~D~tV~LwDlR------------------------------- 303 (422)
T KOG0264|consen 258 RSNTSKPSHSVKAHS-AEVNCVAFNPF--NEFILATGSADKTVALWDLR------------------------------- 303 (422)
T ss_pred CCCCCCCcccccccC-CceeEEEeCCC--CCceEEeccCCCcEEEeech-------------------------------
Confidence 953 3333333433 45778888554 58899999999999999999
Q ss_pred ccceeeEEEEecCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEecccCcccCC-C-----CceeeeceEEeccceeEEEEE
Q 003423 243 QHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDS-D-----SIEEVGSSVLYGHNARVWDCC 315 (821)
Q Consensus 243 ~~~~~~~~~~~~h~~~I~~l~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~-~-----~~~~~~~~~~~~h~~~i~~v~ 315 (821)
.-.++++++.+|+..|+.|.|+|.. ..|||++.||.+.+||+..-...++ . +.+.+ ..-.||.+.|..+.
T Consensus 304 -nL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEll--F~HgGH~~kV~Dfs 380 (422)
T KOG0264|consen 304 -NLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELL--FIHGGHTAKVSDFS 380 (422)
T ss_pred -hcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCccee--EEecCccccccccc
Confidence 1345788999999999999999965 5799999999999999976433211 0 11111 46678999999999
Q ss_pred Ec---CCEEEEEeCCCeEEEEcCC
Q 003423 316 LT---DSFIITAGEDCTCRVWGSD 336 (821)
Q Consensus 316 ~~---~~~l~s~~~dg~i~iwd~~ 336 (821)
|+ |-.++|.++|+.++||...
T Consensus 381 Wnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 381 WNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCCCCeEEEEecCCceEEEeecc
Confidence 98 4689999999999999984
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.9e-21 Score=186.40 Aligned_cols=274 Identities=15% Similarity=0.205 Sum_probs=205.2
Q ss_pred CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE-EcCCeEEEEEEeecCCCCCCCCCcccccc
Q 003423 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNL 122 (821)
Q Consensus 44 ~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~-~g~~~v~i~~~~~~~~~~~~~~~~~~~~~ 122 (821)
..+.+||+.||..+.+++......-++...-. + .+++++ .+...+.+|.+..+.
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~------~-----~yllsaq~~rp~l~vw~i~k~~-------------- 72 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALN------N-----EYLLSAQLKRPLLHVWEILKKD-------------- 72 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhhc------h-----hheeeecccCccccccccCchh--------------
Confidence 56999999999998888754221222222110 0 123333 346789999987553
Q ss_pred ceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeC
Q 003423 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (821)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (821)
+ .....--+++|.+++-+| +|.+|+.|+..+.+.+|.+.+|..+..+..|-.. +..+.| +.|+.++++|+.|
T Consensus 73 ~-~~q~~v~Pg~v~al~s~n---~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~-ITcL~f---s~dgs~iiTgskD 144 (476)
T KOG0646|consen 73 Q-VVQYIVLPGPVHALASSN---LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQS-ITCLKF---SDDGSHIITGSKD 144 (476)
T ss_pred h-hhhhcccccceeeeecCC---CceEEEeecccCcEEEEEeccccHHHHHHhhccc-eeEEEE---eCCCcEEEecCCC
Confidence 1 112223458899999999 9999998889999999999999998877666553 445555 5799999999999
Q ss_pred CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCC--CEEEEEeCCCeE
Q 003423 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG--SKLVSVSDDRSA 280 (821)
Q Consensus 203 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~~l~s~s~Dg~i 280 (821)
|.|.+|++..-- .. +......+++.+..|.-+|+.+...+.| .+|+|+|.|+++
T Consensus 145 g~V~vW~l~~lv-----------------------~a-~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~ 200 (476)
T KOG0646|consen 145 GAVLVWLLTDLV-----------------------SA-DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTI 200 (476)
T ss_pred ccEEEEEEEeec-----------------------cc-ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceE
Confidence 999999987110 00 0111457888999999999999988754 589999999999
Q ss_pred EEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC---C--------------Cceee
Q 003423 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS---D--------------GKQLK 341 (821)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~---~--------------~~~~~ 341 (821)
|+||+..+.. + .-......+.+++.. +..++.|+++|.|.+.++ . +..+.
T Consensus 201 k~wdlS~g~L-----L------lti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~ 269 (476)
T KOG0646|consen 201 KLWDLSLGVL-----L------LTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN 269 (476)
T ss_pred EEEEecccee-----e------EEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceee
Confidence 9999999865 2 333456678888888 589999999999988876 2 23456
Q ss_pred EeecccC-CCeEEEEEecCCCEEEEEeCCCcEEEEEcCC-cCCCcc
Q 003423 342 MIKEHIG-RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSL 385 (821)
Q Consensus 342 ~~~~h~~-~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~-~~~~~~ 385 (821)
.+.+|.+ ++|+|++++-||.+|++|+.||.+.+||+.. ++++++
T Consensus 270 ~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 270 VLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred eeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 6778877 5799999999999999999999999999954 445443
No 125
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.3e-18 Score=182.25 Aligned_cols=530 Identities=14% Similarity=0.120 Sum_probs=311.6
Q ss_pred eEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc
Q 003423 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 89 ~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
..+.+.-+..|.||...++ ..+..+++|..+++.+.+.|..++-.++.+++.||.|++||...+.
T Consensus 29 k~l~~~~~~~V~VyS~~Tg---------------~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~ 93 (792)
T KOG1963|consen 29 KFLFLCTGNFVKVYSTATG---------------ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE 93 (792)
T ss_pred cEEEEeeCCEEEEEecchH---------------hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE
Confidence 3666666789999998865 4667899999999999999843334678899999999999999999
Q ss_pred eeEEEccCcc--eeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccce
Q 003423 169 IILEVHSPER--CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (821)
Q Consensus 169 ~~~~~~~~~~--~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (821)
.++.+...-. ...+.+++... ...+..+..|..+ ...... .......+...-. ...
T Consensus 94 Llkt~~~~~~v~~~~~~~~~a~~---s~~~~~s~~~~~~--~~~~s~------------~~~~q~~~~~~~t-----~~~ 151 (792)
T KOG1963|consen 94 LLKTFDNNLPVHALVYKPAQADI---SANVYVSVEDYSI--LTTFSK------------KLSKQSSRFVLAT-----FDS 151 (792)
T ss_pred EEEEEecCCceeEEEechhHhCc---cceeEeeccccee--eeeccc------------ccccceeeeEeee-----ccc
Confidence 8887754332 23333222211 1111111111111 110000 0000000000000 001
Q ss_pred eeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEE
Q 003423 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (821)
Q Consensus 247 ~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~ 324 (821)
.....+.+|.. -.+|.+++.|.+...+-. ..+.+|+...... .... ...-..|...+++.+++ +++++++
T Consensus 152 ~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~~-----~~~~-~~~~~~Htf~~t~~~~spn~~~~Aa~ 223 (792)
T KOG1963|consen 152 AKGDFLKEHQE-PKSIVDNNSGEFKGIVHM-CKIHIYFVPKHTK-----HTSS-RDITVHHTFNITCVALSPNERYLAAG 223 (792)
T ss_pred cchhhhhhhcC-CccEEEcCCceEEEEEEe-eeEEEEEecccce-----eecc-chhhhhhcccceeEEeccccceEEEe
Confidence 11111223333 356778888776555544 5688898877432 1000 02334567778888888 5899999
Q ss_pred eCCCeEEEEcCC-----CceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcc
Q 003423 325 GEDCTCRVWGSD-----GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTE 399 (821)
Q Consensus 325 ~~dg~i~iwd~~-----~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 399 (821)
..||.|.+|.-- ......++-|.. .|.+++|+++|.+|++||.+|.+.+|.+.+.. +++
T Consensus 224 d~dGrI~vw~d~~~~~~~~t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqf-------------- 287 (792)
T KOG1963|consen 224 DSDGRILVWRDFGSSDDSETCTLLHWHHD-EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQF-------------- 287 (792)
T ss_pred ccCCcEEEEeccccccccccceEEEeccc-ccceeEEecCCceEeecccceEEEEEeecCCC-ccc--------------
Confidence 999999999852 234566888888 59999999999999999999999999996532 111
Q ss_pred eEEeecCCcccceeccCCCCcceEEEEeecCCeEE-EEecCCcEEEEEecCCCcce-eeEeeec-c-----CCcceEEEe
Q 003423 400 IFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLY-IATNHGYLYHTKLCDMDSVN-WNKILQV-S-----EGMPIICMD 471 (821)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l-~~~~~g~~~~~~i~~~~~~~-~~~~~~~-~-----~~~~i~~~~ 471 (821)
+..-...|..+.++||+.++ +...+..+..++..+..... -..+... + ...-...+.
T Consensus 288 ---------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~ 352 (792)
T KOG1963|consen 288 ---------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVS 352 (792)
T ss_pred ---------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEE
Confidence 11124569999999988554 45667778777665543211 0000000 0 001111122
Q ss_pred ccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEE-eeccCc-cceeeeeEEeecCCCeEEEEEC-------
Q 003423 472 LLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTF-TWSAGI-ERQLLGTYWCKSLGHRFIFTAD------- 542 (821)
Q Consensus 472 ~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~~------- 542 (821)
+. |..+.++..+..|.+++||+-+.....+..... ..+.+. ..+......+.+..|.+++|..
T Consensus 353 id--------pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~ 424 (792)
T KOG1963|consen 353 ID--------PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFN 424 (792)
T ss_pred Ec--------CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhh
Confidence 22 244778888899999999987765432222211 111111 1222222223334577887754
Q ss_pred -CCC--cEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecC--CCEEEEEcCCCcEEEEecCccccccc
Q 003423 543 -PKG--RLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE--DEVLFCGDLRGNLVLFPLLRDLLNDK 617 (821)
Q Consensus 543 -~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~~~L~sgs~dG~i~iw~~~~~~~~~~ 617 (821)
.|| .+++|..... ...+.+......+|...+.+.++.+. ....++++.||.+++|-+....
T Consensus 425 ~~~~e~~LKFW~~n~~----------~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~---- 490 (792)
T KOG1963|consen 425 FFDGEVSLKFWQYNPN----------SKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDS---- 490 (792)
T ss_pred ccCceEEEEEEEEcCC----------cceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccc----
Confidence 233 4778887655 23345555556789888888777642 3389999999999999984321
Q ss_pred ccccccccCccccccc--ccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEeec-CCceeeeeeee-eeeeeeeeeee
Q 003423 618 SVALHVEVSPLNYFKG--AHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDK-DRESLEFIGMK-QVKELSLIQSV 693 (821)
Q Consensus 618 ~~~~~~~~~~~~~~~~--~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~-~~~~~~~~~~~-~~~~~~~~~~~ 693 (821)
..........++. ...+..+++.+|. .+ +.+++.|-|++|.+|+.+. +++........ .+.++...
T Consensus 491 ---n~~k~~s~W~c~~i~sy~k~~i~a~~fs---~d-Gslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~--- 560 (792)
T KOG1963|consen 491 ---NIYKKSSNWTCKAIGSYHKTPITALCFS---QD-GSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFT--- 560 (792)
T ss_pred ---ccCcCccceEEeeeeccccCcccchhhc---CC-CcEEEEecCCEEEEecCCChhhhhccccccccchHhHhhh---
Confidence 0111222222221 1226678888888 44 4799999999999999976 33221111000 01111000
Q ss_pred ccCCCccCCCCCe-EEEeeecccEEEEECccccEEEEEeeC
Q 003423 694 SAENNSIDLASCN-YAAGFASTDFIIWNLITEAKVVQIPCG 733 (821)
Q Consensus 694 ~~~~~~~~~~~~~-l~~g~~~~~~~vW~~~~~~~l~~i~cg 733 (821)
...... .+.-+...++.+||+.+....+..+|.
T Consensus 561 -------~~~~~~~~~~~~~~~~l~~WNll~~~l~w~~s~~ 594 (792)
T KOG1963|consen 561 -------AQTQNDGALVHATQQRLSVWNLLSMSLIWNLSLS 594 (792)
T ss_pred -------cccccccceeeccCceEehHhhhhhheecchhhh
Confidence 001111 445566788999999999999876664
No 126
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.9e-20 Score=171.29 Aligned_cols=303 Identities=18% Similarity=0.207 Sum_probs=195.4
Q ss_pred eeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce-----eE-EEc-cCcceeEEEEeeccCCccC-eEE
Q 003423 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-----IL-EVH-SPERCLLYSMKLWGDNLEA-LRI 196 (821)
Q Consensus 125 ~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~-----~~-~~~-~~~~~~~~s~~~~~~s~~~-~~l 196 (821)
...|++|.+.|++++|+. +|+.|||++.|++|++|++.+-.. ++ .+. .|...+. | .||- ..+
T Consensus 79 ~~~LKgH~~~vt~~~FsS---dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~----F---apDc~s~v 148 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSS---DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVV----F---APDCKSVV 148 (420)
T ss_pred hhhhhccCCceeeeEEcC---CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEE----E---CCCcceEE
Confidence 557899999999999999 999999999999999999986321 11 111 1222233 3 2453 344
Q ss_pred EEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeC
Q 003423 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (821)
Q Consensus 197 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~ 276 (821)
++.-....+++|.+... .++....++... ....--+.|.-.|..+-...++.+|+|++.
T Consensus 149 v~~~~g~~l~vyk~~K~-----~dG~~~~~~v~~----------------D~~~f~~kh~v~~i~iGiA~~~k~imsas~ 207 (420)
T KOG2096|consen 149 VSVKRGNKLCVYKLVKK-----TDGSGSHHFVHI----------------DNLEFERKHQVDIINIGIAGNAKYIMSASL 207 (420)
T ss_pred EEEccCCEEEEEEeeec-----ccCCCCcccccc----------------cccccchhcccceEEEeecCCceEEEEecC
Confidence 55556678999988722 121111111110 001112357777888888888899999999
Q ss_pred CCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC----CC-----ceeeEeec
Q 003423 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS----DG-----KQLKMIKE 345 (821)
Q Consensus 277 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~----~~-----~~~~~~~~ 345 (821)
|..|.+|+++ ++. +. .+......-+..+.+ +.++++++..-.+++|++ +| +.+..+++
T Consensus 208 dt~i~lw~lk-Gq~-----L~-----~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 208 DTKICLWDLK-GQL-----LQ-----SIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred CCcEEEEecC-Cce-----ee-----eeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence 9999999999 443 22 222223333444555 689999999999999997 33 34567899
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEE
Q 003423 346 HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (821)
Q Consensus 346 h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 425 (821)
|+. .|..++|+++.+.++|.+.||++++||.+-+..... +..++.. +. ..+.......-.+
T Consensus 277 H~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q-----------Dpk~Lk~------g~-~pl~aag~~p~RL 337 (420)
T KOG2096|consen 277 HQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ-----------DPKILKE------GS-APLHAAGSEPVRL 337 (420)
T ss_pred chh-heeeeeeCCCcceeEEEecCCcEEEeeccceEecCC-----------CchHhhc------CC-cchhhcCCCceEE
Confidence 998 799999999999999999999999999853211000 0000000 00 1111112234489
Q ss_pred EeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEE
Q 003423 426 HLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (821)
Q Consensus 426 ~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~ 500 (821)
+.+|++..|+.+....+.. +..++.+-.+.....+...|.++.+.+ +++++++++ |..++++.
T Consensus 338 ~lsP~g~~lA~s~gs~l~~---~~se~g~~~~~~e~~h~~~Is~is~~~--------~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 338 ELSPSGDSLAVSFGSDLKV---FASEDGKDYPELEDIHSTTISSISYSS--------DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EeCCCCcEEEeecCCceEE---EEcccCccchhHHHhhcCceeeEEecC--------CCcEEeeec-ceeeeeec
Confidence 9999999999887666653 333333323333344567788888765 447877766 44666654
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=9.3e-21 Score=185.49 Aligned_cols=258 Identities=18% Similarity=0.219 Sum_probs=195.7
Q ss_pred CCCcceeeccce-------eeeeeEEEEEeccCCCCCCcceEEee-cCCeEEEEECCCCeeeeEEEeeccccEEeEEecc
Q 003423 4 KDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNF 75 (821)
Q Consensus 4 ~~i~~w~~~~~~-------~~~~Vt~l~~~~~p~~~~~~~~l~~g-~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~ 75 (821)
..+-+|.+.... ..++|+||+-+ |+ +.+|++| ..+.|++|.+.+|+++..+..|.. .|+++.|+.
T Consensus 61 p~l~vw~i~k~~~~~q~~v~Pg~v~al~s~--n~----G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ-~ITcL~fs~ 133 (476)
T KOG0646|consen 61 PLLHVWEILKKDQVVQYIVLPGPVHALASS--NL----GYFLLAGTISGNLYLWELSSGILLNVLSAHYQ-SITCLKFSD 133 (476)
T ss_pred ccccccccCchhhhhhhcccccceeeeecC--CC----ceEEEeecccCcEEEEEeccccHHHHHHhhcc-ceeEEEEeC
Confidence 456677777654 45889999999 88 7888888 589999999999999999977655 799999995
Q ss_pred ccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC
Q 003423 76 INCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (821)
Q Consensus 76 ~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~ 155 (821)
++ ..++.++.|+.|.+|.+..--+ ++.....++++.+..|.-+|+++...+. ....+|+|++.
T Consensus 134 dg----------s~iiTgskDg~V~vW~l~~lv~------a~~~~~~~p~~~f~~HtlsITDl~ig~G-g~~~rl~TaS~ 196 (476)
T KOG0646|consen 134 DG----------SHIITGSKDGAVLVWLLTDLVS------ADNDHSVKPLHIFSDHTLSITDLQIGSG-GTNARLYTASE 196 (476)
T ss_pred CC----------cEEEecCCCccEEEEEEEeecc------cccCCCccceeeeccCcceeEEEEecCC-CccceEEEecC
Confidence 53 2556666699999999874321 1111135788999999999999999871 13468999999
Q ss_pred CCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcc
Q 003423 156 DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (821)
Q Consensus 156 d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (821)
|.++++||+..+..+.++..+.. +.++.+ +|.+..+..|+.+|.|.+.++.... ++.......
T Consensus 197 D~t~k~wdlS~g~LLlti~fp~s--i~av~l---Dpae~~~yiGt~~G~I~~~~~~~~~--~~~~~v~~k---------- 259 (476)
T KOG0646|consen 197 DRTIKLWDLSLGVLLLTITFPSS--IKAVAL---DPAERVVYIGTEEGKIFQNLLFKLS--GQSAGVNQK---------- 259 (476)
T ss_pred CceEEEEEeccceeeEEEecCCc--ceeEEE---cccccEEEecCCcceEEeeehhcCC--ccccccccc----------
Confidence 99999999999999988876653 344444 5889999999999999999887211 000000000
Q ss_pred eeeecccccceeeEEEEecCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEE
Q 003423 236 CFKLQDQQHTAVNLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (821)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~h~~--~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 313 (821)
........+..+.||++ .|+|++.+-||.+|++|+.||.|+|||+...+. ++ ++....++|+.
T Consensus 260 -----~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~-----iR-----tl~~~kgpVtn 324 (476)
T KOG0646|consen 260 -----GRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC-----IR-----TLQTSKGPVTN 324 (476)
T ss_pred -----ccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH-----HH-----HHhhhccccce
Confidence 01124456777889999 999999999999999999999999999998766 42 44436677888
Q ss_pred EEEc
Q 003423 314 CCLT 317 (821)
Q Consensus 314 v~~~ 317 (821)
+.+.
T Consensus 325 L~i~ 328 (476)
T KOG0646|consen 325 LQIN 328 (476)
T ss_pred eEee
Confidence 7774
No 128
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=1.8e-20 Score=183.30 Aligned_cols=240 Identities=15% Similarity=0.216 Sum_probs=181.9
Q ss_pred EEEEEc-CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc
Q 003423 90 EVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 90 ~l~~~g-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
++++.. .+.+.|||.......... .-...+..+|.+|.+.=++++|++ .....|++|+.|++|++||+....
T Consensus 139 iVAt~t~~~dv~Vfd~tk~~s~~~~-----~~~~~Pdl~L~gH~~eg~glsWn~--~~~g~Lls~~~d~~i~lwdi~~~~ 211 (422)
T KOG0264|consen 139 IVATKTSSGDVYVFDYTKHPSKPKA-----SGECRPDLRLKGHEKEGYGLSWNR--QQEGTLLSGSDDHTICLWDINAES 211 (422)
T ss_pred EEEecCCCCCEEEEEeccCCCcccc-----cccCCCceEEEeeccccccccccc--ccceeEeeccCCCcEEEEeccccc
Confidence 555443 689999998754321110 002455668889998888899998 245689999999999999997543
Q ss_pred e------eEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccc
Q 003423 169 I------ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (821)
Q Consensus 169 ~------~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (821)
. .+.....+...+-.++|+.. +..++++.+.|+.+.|||.+.+
T Consensus 212 ~~~~~~~p~~~~~~h~~~VeDV~~h~~--h~~lF~sv~dd~~L~iwD~R~~----------------------------- 260 (422)
T KOG0264|consen 212 KEDKVVDPKTIFSGHEDVVEDVAWHPL--HEDLFGSVGDDGKLMIWDTRSN----------------------------- 260 (422)
T ss_pred cCCccccceEEeecCCcceehhhcccc--chhhheeecCCCeEEEEEcCCC-----------------------------
Confidence 2 12222233344555566543 5678999999999999999921
Q ss_pred ccceeeEEEEecCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC---
Q 003423 243 QHTAVNLFRLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--- 318 (821)
Q Consensus 243 ~~~~~~~~~~~~h~~~I~~l~~s~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--- 318 (821)
+.++.....+|.+.|+|++|+|- +..|||||.|++|++||+++... + +..+.+|...|.++.|+|
T Consensus 261 --~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-------~--lh~~e~H~dev~~V~WSPh~e 329 (422)
T KOG0264|consen 261 --TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-------P--LHTFEGHEDEVFQVEWSPHNE 329 (422)
T ss_pred --CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-------C--ceeccCCCcceEEEEeCCCCC
Confidence 23445556799999999999994 56789999999999999998643 1 168999999999999994
Q ss_pred CEEEEEeCCCeEEEEcCC--C-------------ceeeEeecccCCCeEEEEEecCCC-EEEEEeCCCcEEEEEcCC
Q 003423 319 SFIITAGEDCTCRVWGSD--G-------------KQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 319 ~~l~s~~~dg~i~iwd~~--~-------------~~~~~~~~h~~~~i~~l~~~~~~~-~l~tg~~dg~I~iwd~~~ 379 (821)
..|+|+++|+.+.+||+. | +.+....||..+ |..+.|+|+.. .|++...|+.+.||++..
T Consensus 330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~k-V~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAK-VSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccc-cccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 799999999999999992 2 234667788884 99999999876 578889999999999954
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=9.6e-21 Score=186.15 Aligned_cols=239 Identities=17% Similarity=0.257 Sum_probs=192.7
Q ss_pred ccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccC--CCCcEEEEEEe
Q 003423 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR--LSHWVFDVCFL 141 (821)
Q Consensus 64 ~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~I~~~~~~ 141 (821)
+++-|..+.++.. ...+.+.|.+.|+|||+..... -..+..|.. -..-|.++.++
T Consensus 418 HGEvVcAvtIS~~-----------trhVyTgGkgcVKVWdis~pg~------------k~PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 418 HGEVVCAVTISNP-----------TRHVYTGGKGCVKVWDISQPGN------------KSPVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred cCcEEEEEEecCC-----------cceeEecCCCeEEEeeccCCCC------------CCccccccccCcccceeeeEec
Confidence 4455666666633 3678888999999999985421 122333322 34679999999
Q ss_pred ecCCCCCEEEEEECCCcEEEEEccCCceeE--EEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCC
Q 003423 142 KVCNGNRSLAIGCSDNSIRVWDISNSSIIL--EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLL 219 (821)
Q Consensus 142 ~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 219 (821)
| ||+.|++|+.-.++.|||+....... ++... ....|.++. ++|.++.+++..||.|.|||+.
T Consensus 475 p---dgrtLivGGeastlsiWDLAapTprikaeltss-apaCyALa~---spDakvcFsccsdGnI~vwDLh-------- 539 (705)
T KOG0639|consen 475 P---DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSS-APACYALAI---SPDAKVCFSCCSDGNIAVWDLH-------- 539 (705)
T ss_pred C---CCceEEeccccceeeeeeccCCCcchhhhcCCc-chhhhhhhc---CCccceeeeeccCCcEEEEEcc--------
Confidence 9 99999999999999999998765432 22221 112445444 7899999999999999999999
Q ss_pred CCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceee
Q 003423 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV 299 (821)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~ 299 (821)
....+..|.||.+.+.||..++||..|-||+-|.+||-||+++++. .
T Consensus 540 -------------------------nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq-----l--- 586 (705)
T KOG0639|consen 540 -------------------------NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ-----L--- 586 (705)
T ss_pred -------------------------cceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh-----h---
Confidence 6788999999999999999999999999999999999999999865 2
Q ss_pred eceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 300 GSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 300 ~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
......+.|.++-+. +.+++.|-+++.+-+-...+.....+..|.. .|.++.|.+.|+++++.|.|..+..|..
T Consensus 587 ---qqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 587 ---QQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred ---hhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeeccccc-EEEEEEecccCceeeecCchhhhhhccC
Confidence 333446778888776 5899999999999999888888888988988 6999999999999999999999999976
No 130
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.6e-20 Score=172.68 Aligned_cols=224 Identities=16% Similarity=0.259 Sum_probs=165.1
Q ss_pred ccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeec
Q 003423 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV 143 (821)
Q Consensus 64 ~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~ 143 (821)
++..|..+++.+.. + .+++..+.|+.+.+||++.....+...--......-....-.+|.-.|.++.|-|.
T Consensus 42 HgGsvNsL~id~te------g---rymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTE------G---RYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred CCCccceeeecccc------c---eEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee
Confidence 44567777776441 1 24555556899999999865422211100011111123345678889999999994
Q ss_pred CCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCC
Q 003423 144 CNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (821)
Q Consensus 144 ~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 223 (821)
|...+.+++-|.++++||..+.+....++-+.. +|+-++.+-.....+||+|+.+-+|++-|+.
T Consensus 113 --DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~--VYshamSp~a~sHcLiA~gtr~~~VrLCDi~------------ 176 (397)
T KOG4283|consen 113 --DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGK--VYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA------------ 176 (397)
T ss_pred --cCceeecccccceEEEeecccceeeEEeecCce--eehhhcChhhhcceEEEEecCCCcEEEEecc------------
Confidence 556788899999999999999888777776653 6666654444557799999999999999999
Q ss_pred CcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEecccCccc-------CCCC
Q 003423 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWK-------DSDS 295 (821)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~-l~s~s~Dg~i~iwd~~~~~~~-------~~~~ 295 (821)
++..-+++.||.+.|.++.|+|...+ |+||+.||.||+||++..... ....
T Consensus 177 ---------------------SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~ 235 (397)
T KOG4283|consen 177 ---------------------SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKR 235 (397)
T ss_pred ---------------------CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCcc
Confidence 77888999999999999999998775 799999999999999864210 0000
Q ss_pred ceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC
Q 003423 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS 335 (821)
Q Consensus 296 ~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~ 335 (821)
...+ ..-..|.+.|.+++|. +.++++++.|..+++|+.
T Consensus 236 ~p~~--~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 236 PPIL--KTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred Cccc--cccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 1111 2355788999999998 689999999999999998
No 131
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.1e-19 Score=164.70 Aligned_cols=280 Identities=12% Similarity=0.226 Sum_probs=181.5
Q ss_pred ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc----CCEEEEEeCCC
Q 003423 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDC 328 (821)
Q Consensus 253 ~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~----~~~l~s~~~dg 328 (821)
.+|.+-|.++.|.+.|+++|||+.|++|+|||.+.... +-.+. .....|.+.|+.+.|. +..+++++.|+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~----~W~~T--s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG----TWSCT--SSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC----ceEEe--eeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 48999999999999999999999999999999755432 12222 5788899999999997 58999999999
Q ss_pred eEEEEcCC-------C---ceeeEeecccCCCeEEEEEecC--CCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCC
Q 003423 329 TCRVWGSD-------G---KQLKMIKEHIGRGIWRCLYDSL--SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNG 396 (821)
Q Consensus 329 ~i~iwd~~-------~---~~~~~~~~h~~~~i~~l~~~~~--~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 396 (821)
++.||+-. + ....++..... .|+.+.|.|. |-.+|+++.||.+|||+....
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~Dsrs-sV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp---------------- 146 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRS-SVTDVKFAPKHLGLKLAAASADGILRIYEAPDP---------------- 146 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCc-ceeEEEecchhcceEEEEeccCcEEEEEecCCc----------------
Confidence 99999851 1 23445555555 6999999985 678999999999999987321
Q ss_pred CcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCC
Q 003423 397 RTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE 476 (821)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 476 (821)
..+...+.... +..+ ..|.+ ....+..|+...+..
T Consensus 147 ----~nLs~W~Lq~E----------i~~~-~~pp~------------------------------~~~~~~~CvsWn~sr 181 (361)
T KOG2445|consen 147 ----MNLSQWTLQHE----------IQNV-IDPPG------------------------------KNKQPCFCVSWNPSR 181 (361)
T ss_pred ----cccccchhhhh----------hhhc-cCCcc------------------------------cccCcceEEeecccc
Confidence 00110110000 0000 00100 001122222222211
Q ss_pred CCCCCCCCcEEEEecCC-----ccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecC--CCeEEEEECCCCcEEE
Q 003423 477 PKYPCGIDDWVALGDGK-----GNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSL--GHRFIFTADPKGRLKL 549 (821)
Q Consensus 477 ~~~s~~~~~~l~~g~~~-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i 549 (821)
-...++|+|+.+ +.++||....+...-.. ++-.++....+..+.|+-+- .-..||+++.|| |+|
T Consensus 182 -----~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k---va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I 252 (361)
T KOG2445|consen 182 -----MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK---VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRI 252 (361)
T ss_pred -----ccCceEEEEcccCCccccceEEEEecCCcceeee---ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEE
Confidence 233677777765 57888887664421111 11112222223333332221 236799999999 999
Q ss_pred eeecCCCC------cccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecC
Q 003423 550 WQLCDPFS------SVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (821)
Q Consensus 550 wd~~~~~~------~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~ 610 (821)
|.+..... ...+.....-.++.+..+ ..|...|..+.|+-.|..|++.+.||.|++|...
T Consensus 253 ~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~-~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 253 FKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL-DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEeeccchhhhhcccCCCCccccceEEeeec-cCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99985321 111112233455667777 7899999999999999999999999999999755
No 132
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.8e-20 Score=194.32 Aligned_cols=286 Identities=14% Similarity=0.178 Sum_probs=207.4
Q ss_pred eeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCe--eeeEEEeec----cccEEeEEeccccCCCCCCccceeeE
Q 003423 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT--LIRPFQVFH----GIRLHGISCNFINCTEGSVSTRVTFE 90 (821)
Q Consensus 17 ~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~--~~~~~~~~~----~~~i~~i~~~~~~~~~~~~~~~~~~~ 90 (821)
.++..|+... ++ ..-++.+....++||...... +-..+.... ...+..+.|... + +.+
T Consensus 39 k~~~nAIs~n--r~----~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~------~----~Nl 102 (839)
T KOG0269|consen 39 KAKANAISVN--RD----INQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQL------Y----SNL 102 (839)
T ss_pred ccccceEeec--CC----cceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccc------h----hhh
Confidence 4567788888 77 445555556678888876432 111121111 112334455422 1 235
Q ss_pred EEE-EcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce
Q 003423 91 VAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (821)
Q Consensus 91 l~~-~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~ 169 (821)
+++ ...|.|.+||+.... +-+.+..+..|...+.+++|++. ...+|++|+.||+|++||++..+.
T Consensus 103 IAT~s~nG~i~vWdlnk~~------------rnk~l~~f~EH~Rs~~~ldfh~t--ep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 103 IATCSTNGVISVWDLNKSI------------RNKLLTVFNEHERSANKLDFHST--EPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred heeecCCCcEEEEecCccc------------cchhhhHhhhhccceeeeeeccC--CccEEEecCCCceEEEEeeecccc
Confidence 554 557999999998521 12566788999999999999983 567999999999999999998777
Q ss_pred eEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeE
Q 003423 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (821)
Q Consensus 170 ~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (821)
..++.+...+ +..+.|. ...+..++++...|.+++||++ ...++.
T Consensus 169 ~~t~~~nSES-iRDV~fs--p~~~~~F~s~~dsG~lqlWDlR--------------------------------qp~r~~ 213 (839)
T KOG0269|consen 169 KSTFRSNSES-IRDVKFS--PGYGNKFASIHDSGYLQLWDLR--------------------------------QPDRCE 213 (839)
T ss_pred cccccccchh-hhceeec--cCCCceEEEecCCceEEEeecc--------------------------------CchhHH
Confidence 6666553222 2223332 2357899999999999999999 245667
Q ss_pred EEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC---CEEEEEe-
Q 003423 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAG- 325 (821)
Q Consensus 250 ~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~---~~l~s~~- 325 (821)
..+.+|.++|.|+.|+|++.+|||||.|+.|+|||+.+.+. .. .......++|..++|.| ..|++++
T Consensus 214 ~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-----~~----~~tInTiapv~rVkWRP~~~~hLAtcsm 284 (839)
T KOG0269|consen 214 KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-----KP----KHTINTIAPVGRVKWRPARSYHLATCSM 284 (839)
T ss_pred HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-----cc----eeEEeecceeeeeeeccCccchhhhhhc
Confidence 77889999999999999999999999999999999997654 11 23344567899999984 5677765
Q ss_pred -CCCeEEEEcCCC--ceeeEeecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEEc
Q 003423 326 -EDCTCRVWGSDG--KQLKMIKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 326 -~dg~i~iwd~~~--~~~~~~~~h~~~~i~~l~~~~-~~~~l~tg~~dg~I~iwd~ 377 (821)
.|-.|+|||+.. -+..++..|.. .++.++|.. +...+.+++.||.|....+
T Consensus 285 v~dtsV~VWDvrRPYIP~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 285 VVDTSVHVWDVRRPYIPYATFLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred cccceEEEEeeccccccceeeeccCc-cccceeccCCCceeeEeecCccHHHHhhh
Confidence 688999999943 45678889998 689999965 4567899999998876655
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=9.7e-20 Score=184.74 Aligned_cols=306 Identities=16% Similarity=0.187 Sum_probs=197.6
Q ss_pred EEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEE
Q 003423 182 YSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFR 261 (821)
Q Consensus 182 ~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 261 (821)
++..|........+||.+..+|.|.++|....... .+...+.....|.+.|+.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr---------------------------~ee~~lk~~~aH~nAifD 105 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR---------------------------LEERQLKKPLAHKNAIFD 105 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcc---------------------------hhhhhhcccccccceeEe
Confidence 34445444456778999999999999998711000 022234556689999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcCC--
Q 003423 262 IEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSD-- 336 (821)
Q Consensus 262 l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~~-- 336 (821)
+.|.|....|++++.|.++++||+...+. . +...+.||...|.++||. +..|++|+.||.+.|||+.
T Consensus 106 l~wapge~~lVsasGDsT~r~Wdvk~s~l-----~---G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 106 LKWAPGESLLVSASGDSTIRPWDVKTSRL-----V---GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN 177 (720)
T ss_pred eccCCCceeEEEccCCceeeeeeecccee-----e---cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence 99999667899999999999999998754 2 224689999999999998 5899999999999999982
Q ss_pred Cc--------------------------eeeEeecccCCCeEE---EEEecCCCEEEEEeC-CCcEEEEEcCCcCCCccc
Q 003423 337 GK--------------------------QLKMIKEHIGRGIWR---CLYDSLSSLLVTAGF-DSAIKVHQFQAFLPGSLE 386 (821)
Q Consensus 337 ~~--------------------------~~~~~~~h~~~~i~~---l~~~~~~~~l~tg~~-dg~I~iwd~~~~~~~~~~ 386 (821)
+. .+..-..+.. .|.+ +.+..|...||++|+ |+.|++||++......-+
T Consensus 178 ~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~-ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ 256 (720)
T KOG0321|consen 178 GVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASN-TIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQ 256 (720)
T ss_pred chhhHHHHhhhhhccccCCCCCCchhhccccccccccC-ceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccccc
Confidence 20 0111112222 3444 445567888999887 999999999653111000
Q ss_pred CCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcc
Q 003423 387 SHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMP 466 (821)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~ 466 (821)
+. .....+...++. ...
T Consensus 257 ep---------------------------------~~~~~~~t~skr------------------------------s~G 273 (720)
T KOG0321|consen 257 EP---------------------------------RGSDKYPTHSKR------------------------------SVG 273 (720)
T ss_pred CC---------------------------------CcccCccCcccc------------------------------eee
Confidence 00 000000000000 000
Q ss_pred eEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCc
Q 003423 467 IICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGR 546 (821)
Q Consensus 467 i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 546 (821)
+.++..+. .+.++...+.|+.|+.|++......+...+. .......-+-.+.++++.++++|+.|..
T Consensus 274 ~~nL~lDs--------sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s-----g~~~~sf~vks~lSpd~~~l~SgSsd~~ 340 (720)
T KOG0321|consen 274 QVNLILDS--------SGTYLFASCTDNSIYFYNMRSLSISPVAEFS-----GKLNSSFYVKSELSPDDCSLLSGSSDEQ 340 (720)
T ss_pred eEEEEecC--------CCCeEEEEecCCcEEEEeccccCcCchhhcc-----CcccceeeeeeecCCCCceEeccCCCcc
Confidence 11111111 2355555556888888888765443322111 1111112222457789999999999999
Q ss_pred EEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecC-CCEEEEEcCCCcEEEEecCccc
Q 003423 547 LKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE-DEVLFCGDLRGNLVLFPLLRDL 613 (821)
Q Consensus 547 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-~~~L~sgs~dG~i~iw~~~~~~ 613 (821)
.++|.+.... .......+|.-.|++++|.|. -.-+|++++|-.+++|++....
T Consensus 341 ayiw~vs~~e--------------~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 341 AYIWVVSSPE--------------APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred eeeeeecCcc--------------CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 9999998763 211223689999999999864 2345556999999999997654
No 134
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=7.5e-18 Score=178.36 Aligned_cols=478 Identities=13% Similarity=0.096 Sum_probs=273.4
Q ss_pred CCCCcceeeccce-------eeeeeEEEEEeccCCCCCCc-ceEEe-ecCCeEEEEECCCCeeeeEEEeeccccEEeEEe
Q 003423 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSL-PFLLA-GSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (821)
Q Consensus 3 ~~~i~~w~~~~~~-------~~~~Vt~l~~~~~p~~~~~~-~~l~~-g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~ 73 (821)
++.|.|+.+.+++ |..+++.+.+. |. ... .++.. ..+|.|++||...++++.++.. ..+++.+.+
T Consensus 36 ~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~--~~--~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~--~~~v~~~~~ 109 (792)
T KOG1963|consen 36 GNFVKVYSTATGECITSLEDHTAPLTSVIVL--PS--SENANYLIVCSLDGTIRVWDWSDGELLKTFDN--NLPVHALVY 109 (792)
T ss_pred CCEEEEEecchHhhhhhcccccCccceeeec--CC--CccceEEEEEecCccEEEecCCCcEEEEEEec--CCceeEEEe
Confidence 4567888888887 78899999998 65 111 34444 4599999999999999998875 335777776
Q ss_pred ccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEE
Q 003423 74 NFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (821)
Q Consensus 74 ~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~ 153 (821)
.+.... . +..+.++.+..-.+.....+........-...........+.+|.. -.++.+++ .+.+.+..
T Consensus 110 ~~~~a~---~----s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~---~ge~~~i~ 178 (792)
T KOG1963|consen 110 KPAQAD---I----SANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNN---SGEFKGIV 178 (792)
T ss_pred chhHhC---c----cceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcC---CceEEEEE
Confidence 543211 1 0112122221111111110000000000000000111222233322 34566666 77665555
Q ss_pred ECCCcEEEEEccCCceeE---EEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCC
Q 003423 154 CSDNSIRVWDISNSSIIL---EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (821)
Q Consensus 154 ~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 230 (821)
- +..+.+|+..++.... ....++.-.....++ +|.+.++|+|..||.|.+|.-...
T Consensus 179 ~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~---spn~~~~Aa~d~dGrI~vw~d~~~----------------- 237 (792)
T KOG1963|consen 179 H-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVAL---SPNERYLAAGDSDGRILVWRDFGS----------------- 237 (792)
T ss_pred E-eeeEEEEEecccceeeccchhhhhhcccceeEEe---ccccceEEEeccCCcEEEEecccc-----------------
Confidence 4 5578899988755211 111222221223333 689999999999999999986510
Q ss_pred CCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEecccee
Q 003423 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (821)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 310 (821)
.........+.-|...|++++|+++|.+|+||+..+.+.+|.+.+++. ..+.--.++
T Consensus 238 ------------~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-----------qfLPRLgs~ 294 (792)
T KOG1963|consen 238 ------------SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-----------QFLPRLGSP 294 (792)
T ss_pred ------------ccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-----------ccccccCCe
Confidence 002233456678999999999999999999999999999999999876 466777889
Q ss_pred EEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecc----------cCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 311 VWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEH----------IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 311 i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h----------~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
|..+.++ +++.....+|+.|.+-.. +.....++.+. ...-.+.++++|.-+.++-.+..|.|.+||+
T Consensus 295 I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 295 ILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDL 374 (792)
T ss_pred eEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEec
Confidence 9999998 477888888999999887 43322222221 1113567888997788888999999999999
Q ss_pred CCc-CCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceee
Q 003423 378 QAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWN 456 (821)
Q Consensus 378 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~ 456 (821)
.+. .+..++. ......+... .....++.++.+..|..+++.. .+.
T Consensus 375 ~td~~i~~~~v-------------~~~n~~~~~~------n~~v~itav~~~~~gs~maT~E--------~~~------- 420 (792)
T KOG1963|consen 375 YTDSTIYKLQV-------------CDENYSDGDV------NIQVGITAVARSRFGSWMATLE--------ARI------- 420 (792)
T ss_pred cccceeeeEEE-------------EeecccCCcc------eeEEeeeeehhhccceEEEEee--------eee-------
Confidence 432 1111110 0000000000 0112244444444444444432 000
Q ss_pred EeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCe
Q 003423 457 KILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHR 536 (821)
Q Consensus 457 ~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (821)
+..-.....-.+++|..............+. .|.. ........+..+...
T Consensus 421 ----------------------------d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~-~PH~-~~~vat~~~~~~rs~ 470 (792)
T KOG1963|consen 421 ----------------------------DKFNFFDGEVSLKFWQYNPNSKTFILNTKIN-NPHG-NAFVATIFLNPTRSV 470 (792)
T ss_pred ----------------------------hhhhccCceEEEEEEEEcCCcceeEEEEEEe-cCCC-ceeEEEEEecCcccc
Confidence 0000011112566676655443222222221 1111 111111111122223
Q ss_pred EEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCc
Q 003423 537 FIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 537 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~ 611 (821)
.+++++.||.+++|-+........ . ...+.|.+. ..-|..++++++|+.||.+|+.|. +++|.+||..+
T Consensus 471 ~~vta~~dg~~KiW~~~~~~n~~k--~--~s~W~c~~i-~sy~k~~i~a~~fs~dGslla~s~-~~~Itiwd~~~ 539 (792)
T KOG1963|consen 471 RCVTASVDGDFKIWVFTDDSNIYK--K--SSNWTCKAI-GSYHKTPITALCFSQDGSLLAVSF-DDTITIWDYDT 539 (792)
T ss_pred eeEEeccCCeEEEEEEecccccCc--C--ccceEEeee-eccccCcccchhhcCCCcEEEEec-CCEEEEecCCC
Confidence 788999999999999966532211 1 122333332 123788899999999998777764 57999999875
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.7e-19 Score=174.79 Aligned_cols=289 Identities=12% Similarity=0.160 Sum_probs=210.6
Q ss_pred CCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC--ceeEEEccCcceeEEEEeeccCCccCe-EEEEEeeCCEEEEE
Q 003423 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVW 208 (821)
Q Consensus 132 ~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~i~vw 208 (821)
.+.|+++.|+| ...+|++|+.|++++||.+... ..++.+.- .++.+.++.|. +++. .+++++....++.|
T Consensus 213 ~~~I~sv~FHp---~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~---p~G~~~i~~s~rrky~ysy 285 (514)
T KOG2055|consen 213 HGGITSVQFHP---TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFA---PNGHSVIFTSGRRKYLYSY 285 (514)
T ss_pred cCCceEEEecC---CCceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeec---CCCceEEEecccceEEEEe
Confidence 36799999999 9999999999999999998643 23444332 23345566663 5666 89999999999999
Q ss_pred EcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEeccc
Q 003423 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-GSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (821)
Q Consensus 209 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~ 287 (821)
|+.+. +...+..+.|++ ..+.....+|++++|+..+..|.|.+....+
T Consensus 286 Dle~a-------------------------------k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT 334 (514)
T KOG2055|consen 286 DLETA-------------------------------KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT 334 (514)
T ss_pred ecccc-------------------------------ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh
Confidence 99832 223344444554 4566778899999999999999999999998
Q ss_pred CcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEE
Q 003423 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (821)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~ 364 (821)
++. + .-..-.+.|.+++|+ +..|+..+.+|.|.+||+ ...+++.+....+-.-++++.++++.+||
T Consensus 335 ~el-----i------~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA 403 (514)
T KOG2055|consen 335 KEL-----I------TSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLA 403 (514)
T ss_pred hhh-----h------heeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEE
Confidence 776 2 444456788999998 688999999999999999 56788887765543456788889999999
Q ss_pred EEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCc---
Q 003423 365 TAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY--- 441 (821)
Q Consensus 365 tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~--- 441 (821)
+|+..|.|.|||.+.... ...+.++..+..-...|++++|+++..+|+.++...
T Consensus 404 ~GS~~GiVNIYd~~s~~~-----------------------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna 460 (514)
T KOG2055|consen 404 TGSDSGIVNIYDGNSCFA-----------------------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA 460 (514)
T ss_pred eccCcceEEEeccchhhc-----------------------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc
Confidence 999999999999754211 111222333333445699999999999998877655
Q ss_pred EEEEEecCCCcce-eeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEec
Q 003423 442 LYHTKLCDMDSVN-WNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (821)
Q Consensus 442 ~~~~~i~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~ 502 (821)
+..+.+....... |-.. ...-..+.|+++.++ +.++|+|...|++.+|.+.
T Consensus 461 lrLVHvPS~TVFsNfP~~--n~~vg~vtc~aFSP~--------sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 461 LRLVHVPSCTVFSNFPTS--NTKVGHVTCMAFSPN--------SGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eEEEeccceeeeccCCCC--CCcccceEEEEecCC--------CceEEeecCCCceeeEeec
Confidence 3333333221111 2111 223456889999764 4999999999999999874
No 136
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=5.7e-19 Score=162.47 Aligned_cols=298 Identities=17% Similarity=0.186 Sum_probs=185.2
Q ss_pred ccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceee---EEEEecCCCcEEEEEEcC-
Q 003423 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN---LFRLVGHEGSIFRIEWSS- 266 (821)
Q Consensus 191 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~I~~l~~s~- 266 (821)
-.+.++++|+.||.|.+||++...... .+.... +..+ ...-.+|+-.|..+.|-|
T Consensus 54 tegrymlSGgadgsi~v~Dl~n~t~~e-~s~li~--------------------k~~c~v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 54 TEGRYMLSGGADGSIAVFDLQNATDYE-ASGLIA--------------------KHKCIVAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred ccceEEeecCCCccEEEEEeccccchh-hcccee--------------------heeeeccccCCccceeeeeeeEEeee
Confidence 468899999999999999998321000 000000 0011 112247888999999999
Q ss_pred CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC-----CEEEEEeCCCeEEEEcC-CCcee
Q 003423 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIITAGEDCTCRVWGS-DGKQL 340 (821)
Q Consensus 267 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-----~~l~s~~~dg~i~iwd~-~~~~~ 340 (821)
|...+.+++.|.++++||..+.+. +..+.....|++-++++ .++++|..|-.|++-|+ .|...
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~-----------a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s 181 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQE-----------AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS 181 (397)
T ss_pred cCceeecccccceEEEeeccccee-----------eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce
Confidence 666899999999999999998654 34555566777777763 46777888889999999 89999
Q ss_pred eEeecccCCCeEEEEEecCCC-EEEEEeCCCcEEEEEcCC--cCCCcccCCccccccCCCcceEEeecCCcccceeccCC
Q 003423 341 KMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQA--FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDS 417 (821)
Q Consensus 341 ~~~~~h~~~~i~~l~~~~~~~-~l~tg~~dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (821)
.++.+|.+ .|.++.|+|... .|++|+.||.|++||++. .+...++.|.. ..+...+....
T Consensus 182 H~LsGHr~-~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~----------------k~~p~~~~n~a 244 (397)
T KOG4283|consen 182 HTLSGHRD-GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT----------------KRPPILKTNTA 244 (397)
T ss_pred eeeccccC-ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC----------------ccCcccccccc
Confidence 99999999 799999999876 468999999999999954 33433333310 01111122334
Q ss_pred CCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEE
Q 003423 418 KSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMT 497 (821)
Q Consensus 418 ~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~ 497 (821)
|.+.+..++|++++..++. .+.|.+++
T Consensus 245 h~gkvngla~tSd~~~l~~-----------------------------------------------------~gtd~r~r 271 (397)
T KOG4283|consen 245 HYGKVNGLAWTSDARYLAS-----------------------------------------------------CGTDDRIR 271 (397)
T ss_pred ccceeeeeeecccchhhhh-----------------------------------------------------ccCccceE
Confidence 5556677777666644433 22233333
Q ss_pred EEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEec
Q 003423 498 IVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSS 577 (821)
Q Consensus 498 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (821)
+|+...+......-..+. +.... ...+.......+.+++.- .++.+.++.+-.+ +.+..+ .
T Consensus 272 ~wn~~~G~ntl~~~g~~~-~n~~~--~~~~~~~~~~s~vfv~~p-~~~~lall~~~sg--------------s~ir~l-~ 332 (397)
T KOG4283|consen 272 VWNMESGRNTLREFGPII-HNQTT--SFAVHIQSMDSDVFVLFP-NDGSLALLNLLEG--------------SFVRRL-S 332 (397)
T ss_pred EeecccCccccccccccc-ccccc--cceEEEeecccceEEEEe-cCCeEEEEEccCc--------------eEEEee-e
Confidence 333332221000000000 00000 000000000011222222 2366777766655 334444 5
Q ss_pred ccCceEEEEEeecCCCEEEEEcCCCcEEEEec
Q 003423 578 CFGARIMCLDASFEDEVLFCGDLRGNLVLFPL 609 (821)
Q Consensus 578 ~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~ 609 (821)
.|...|.|.++-|+=+.+.+|+.||+|..|-.
T Consensus 333 ~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 333 THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cccceeeEEeecCchhhhhccccCCccccccc
Confidence 67888999999999999999999999999975
No 137
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=4.7e-20 Score=191.19 Aligned_cols=287 Identities=13% Similarity=0.123 Sum_probs=200.0
Q ss_pred EEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeE--EEc-cCcceeEEEEe-eccCCccCeEEEEEeeCCEEEEEEc
Q 003423 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL--EVH-SPERCLLYSMK-LWGDNLEALRIASGTIYNEIIVWKV 210 (821)
Q Consensus 135 I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~--~~~-~~~~~~~~s~~-~~~~s~~~~~l~sg~~dg~i~vwd~ 210 (821)
..++...+ +-..++.++. ..++|+.+....... .+. .......++++ ..+.+-+.++||+++..|.|.+||+
T Consensus 42 ~nAIs~nr---~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 42 ANAISVNR---DINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cceEeecC---CcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 44566667 7777777764 577888776432211 111 12222334432 2223567889999999999999999
Q ss_pred ccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecccCc
Q 003423 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEY 289 (821)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-~~~l~s~s~Dg~i~iwd~~~~~ 289 (821)
.. ....+.+..+..|+..|+++.|++. ..+|+|||.||+|++||++..+
T Consensus 118 nk------------------------------~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 118 NK------------------------------SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred Cc------------------------------cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 81 0124566678899999999999985 4689999999999999999876
Q ss_pred ccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcC--CCceeeEeecccCCCeEEEEEecCCCEEE
Q 003423 290 WKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (821)
Q Consensus 290 ~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~--~~~~~~~~~~h~~~~i~~l~~~~~~~~l~ 364 (821)
. . .++.+....|.++.|+ ++.++++.+.|.+++||+ ..++..++..|.+ +|.++.|+|++.+||
T Consensus 168 S-----~-----~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-pV~c~nwhPnr~~lA 236 (839)
T KOG0269|consen 168 S-----K-----STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-PVLCLNWHPNREWLA 236 (839)
T ss_pred c-----c-----ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC-ceEEEeecCCCceee
Confidence 5 3 4777788889999998 589999999999999999 4678889999999 799999999999999
Q ss_pred EEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCC-eEEEEecCCcEE
Q 003423 365 TAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLY 443 (821)
Q Consensus 365 tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~-~~l~~~~~g~~~ 443 (821)
|||.|+.|+||++.+..... ...+. ...++.+++|-|+. ..|++++-....
T Consensus 237 TGGRDK~vkiWd~t~~~~~~---------------~~tIn-------------Tiapv~rVkWRP~~~~hLAtcsmv~dt 288 (839)
T KOG0269|consen 237 TGGRDKMVKIWDMTDSRAKP---------------KHTIN-------------TIAPVGRVKWRPARSYHLATCSMVVDT 288 (839)
T ss_pred ecCCCccEEEEeccCCCccc---------------eeEEe-------------ecceeeeeeeccCccchhhhhhccccc
Confidence 99999999999996521111 11110 12458899999976 455666656666
Q ss_pred EEEecCCCcceeeEeee-ccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEec
Q 003423 444 HTKLCDMDSVNWNKILQ-VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (821)
Q Consensus 444 ~~~i~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~ 502 (821)
.+++|+....- .+... .++...+..+.+.. .+...+.+++.||.+..-.++
T Consensus 289 sV~VWDvrRPY-IP~~t~~eH~~~vt~i~W~~-------~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 289 SVHVWDVRRPY-IPYATFLEHTDSVTGIAWDS-------GDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred eEEEEeecccc-ccceeeeccCccccceeccC-------CCceeeEeecCccHHHHhhhh
Confidence 66777754321 12111 22233333333322 345677888888877654443
No 138
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.3e-18 Score=161.44 Aligned_cols=262 Identities=14% Similarity=0.236 Sum_probs=188.8
Q ss_pred ccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCC
Q 003423 66 IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (821)
Q Consensus 66 ~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~ 145 (821)
.-||++.|.+-+ .++.+++.|++++|||.+.+. -++..-...+.|.+.|..+.|.+ ..
T Consensus 14 DlihdVs~D~~G----------RRmAtCSsDq~vkI~d~~~~s-----------~~W~~Ts~Wrah~~Si~rV~WAh-PE 71 (361)
T KOG2445|consen 14 DLIHDVSFDFYG----------RRMATCSSDQTVKIWDSTSDS-----------GTWSCTSSWRAHDGSIWRVVWAH-PE 71 (361)
T ss_pred ceeeeeeecccC----------ceeeeccCCCcEEEEeccCCC-----------CceEEeeeEEecCCcEEEEEecC-cc
Confidence 459999998654 467788889999999985432 13677788899999999999976 23
Q ss_pred CCCEEEEEECCCcEEEEEccCCc--------eeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCccc
Q 003423 146 GNRSLAIGCSDNSIRVWDISNSS--------IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (821)
Q Consensus 146 ~~~~l~t~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~ 217 (821)
-|+.+|+|+.|+++.||+-.... ...+.-...+..++.+.|.+. .-|..+|+++.||.++||+.-+-
T Consensus 72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~-hlGLklA~~~aDG~lRIYEA~dp---- 146 (361)
T KOG2445|consen 72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPK-HLGLKLAAASADGILRIYEAPDP---- 146 (361)
T ss_pred ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecch-hcceEEEEeccCcEEEEEecCCc----
Confidence 68999999999999999863211 011112233455778887554 46889999999999999987510
Q ss_pred CCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCC---CCEEEEEeCC-----CeEEEEecccCc
Q 003423 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC---GSKLVSVSDD-----RSARIWEVRAEY 289 (821)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~---~~~l~s~s~D-----g~i~iwd~~~~~ 289 (821)
.....|.+... -...+-....|..+-.||.|+|. ..+||.|+++ +.++||......
T Consensus 147 --------------~nLs~W~Lq~E--i~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~ 210 (361)
T KOG2445|consen 147 --------------MNLSQWTLQHE--IQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG 210 (361)
T ss_pred --------------cccccchhhhh--hhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc
Confidence 00011111000 00011122257778899999974 3577777776 589999887654
Q ss_pred ccCCCCceeeeceEEeccceeEEEEEEcC------CEEEEEeCCCeEEEEcCCC---------------------ceeeE
Q 003423 290 WKDSDSIEEVGSSVLYGHNARVWDCCLTD------SFIITAGEDCTCRVWGSDG---------------------KQLKM 342 (821)
Q Consensus 290 ~~~~~~~~~~~~~~~~~h~~~i~~v~~~~------~~l~s~~~dg~i~iwd~~~---------------------~~~~~ 342 (821)
. +......+.+|+.+|++++|.| ..|++++.|| |+||.+.. +.+..
T Consensus 211 r------Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~ 283 (361)
T KOG2445|consen 211 R------KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE 283 (361)
T ss_pred c------eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee
Confidence 2 2222267889999999999985 4889999999 99999842 24455
Q ss_pred eecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 343 IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 343 ~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
+..|.+ .||.+.|+-.|..|++.|.||.||+|..+
T Consensus 284 ~~~H~~-~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 284 LDDHNG-EVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ccCCCC-ceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 778988 59999999999999999999999999873
No 139
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=2.4e-18 Score=173.90 Aligned_cols=209 Identities=12% Similarity=0.181 Sum_probs=140.2
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC---CEEEEEeCCCeEEEE
Q 003423 258 SIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVW 333 (821)
Q Consensus 258 ~I~~l~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~---~~l~s~~~dg~i~iw 333 (821)
.|+.+.|.| |..+||.+++||.|++|.+..+....... .....+.+|...|+++.|++ +.|++++.|-+|++|
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~---tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM---TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC---CcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 467788888 66789999999999999998865521111 11157889999999999994 899999999999999
Q ss_pred cC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccce
Q 003423 334 GS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQI 412 (821)
Q Consensus 334 d~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (821)
|+ .++....+.+|++ .|..++|+|+|+.+++.+.||+|++|+.+.......++.. .
T Consensus 706 Dl~~~~~~~~l~gHtd-qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g---------------------p- 762 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTD-QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG---------------------P- 762 (1012)
T ss_pred ehhhhhhhheeccCcC-ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC---------------------C-
Confidence 99 7888889999999 6999999999999999999999999998653222222210 0
Q ss_pred eccCCCCcceEEEEeecCCeEEEEecCCc--EEEEEecCCCcceeeEeeeccCCcceEEEeccCCC-CCCCCCC-CcEEE
Q 003423 413 RLTDSKSEYVRCLHLTSEDTLYIATNHGY--LYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE-PKYPCGI-DDWVA 488 (821)
Q Consensus 413 ~~~~~~~~~i~~l~f~~~~~~l~~~~~g~--~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~-~~~l~ 488 (821)
....-..+.|.-+|++++.+.-.+ -..+.+++.+......+. ...++..+.. .-+-.++ .-+++
T Consensus 763 -----vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~-------t~~lDvaps~LvP~YD~Ds~~lfl 830 (1012)
T KOG1445|consen 763 -----VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLY-------TQVLDVAPSPLVPHYDYDSNVLFL 830 (1012)
T ss_pred -----ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcce-------eeeecccCccccccccCCCceEEE
Confidence 012234556677777766653221 112223333332211111 1123333322 1111122 34677
Q ss_pred EecCCccEEEEEecCC
Q 003423 489 LGDGKGNMTIVRVVGD 504 (821)
Q Consensus 489 ~g~~~g~i~i~~~~~~ 504 (821)
+|-.|..|.+|.+-..
T Consensus 831 tGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 831 TGKGDRFVNMYEVIYE 846 (1012)
T ss_pred ecCCCceEEEEEecCC
Confidence 8888999999997543
No 140
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-18 Score=170.27 Aligned_cols=291 Identities=15% Similarity=0.179 Sum_probs=199.7
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CC-EEEEEeCCCeEEE
Q 003423 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DS-FIITAGEDCTCRV 332 (821)
Q Consensus 256 ~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~-~l~s~~~dg~i~i 332 (821)
.+.|++|.|+|....|++|+.||+++||.+..... . .+ ..+.--..+|.+.+|. +. .+++++....+..
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-----~-~l--qS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-----P-KL--QSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC-----h-hh--eeeeeccCccceeeecCCCceEEEecccceEEEE
Confidence 46899999999999999999999999999987543 1 11 3455557789999998 34 8999999999999
Q ss_pred EcCC-Cc--eeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcC-CCcccCCccccccCCCcceEEeecCCc
Q 003423 333 WGSD-GK--QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL-PGSLESHPEAKEFNGRTEIFSIKIPNF 408 (821)
Q Consensus 333 wd~~-~~--~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (821)
||+. .+ .+....++..+.+....+++++++|+..|..|.|.+....+.. +.++ .+
T Consensus 285 yDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~------------------Ki--- 343 (514)
T KOG2055|consen 285 YDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF------------------KI--- 343 (514)
T ss_pred eeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee------------------ee---
Confidence 9993 32 3334455555568888999999999999999999988764421 1111 00
Q ss_pred ccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEE
Q 003423 409 SEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVA 488 (821)
Q Consensus 409 ~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~ 488 (821)
.+.++.++|+++++ .++
T Consensus 344 ----------eG~v~~~~fsSdsk-----------------------------------------------------~l~ 360 (514)
T KOG2055|consen 344 ----------EGVVSDFTFSSDSK-----------------------------------------------------ELL 360 (514)
T ss_pred ----------ccEEeeEEEecCCc-----------------------------------------------------EEE
Confidence 13356666665543 333
Q ss_pred EecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccce
Q 003423 489 LGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNN 568 (821)
Q Consensus 489 ~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 568 (821)
+.+.+|.|++|++....+ ...|..+ ..+.+...|.++++.|||+|+..|.|.|||..+......+
T Consensus 361 ~~~~~GeV~v~nl~~~~~------~~rf~D~--G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P------- 425 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSC------LHRFVDD--GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP------- 425 (514)
T ss_pred EEcCCceEEEEecCCcce------EEEEeec--CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCC-------
Confidence 333445666666554322 1122221 2234455678888999999999999999997765322221
Q ss_pred eeeeEEEecccCceEEEEEeecCCCEEEEEcC--CCcEEEEecCcccccccccccccccCcccccccccCCcceEEEEEE
Q 003423 569 VFLVAEFSSCFGARIMCLDASFEDEVLFCGDL--RGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVA 646 (821)
Q Consensus 569 ~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~--dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~ 646 (821)
+.+..+ ..-...|+++.|+++.++||.+|+ +..+++-.+...+. -..+++... ....|||++|+
T Consensus 426 -kPik~~-dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV-------FsNfP~~n~-----~vg~vtc~aFS 491 (514)
T KOG2055|consen 426 -KPIKTV-DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV-------FSNFPTSNT-----KVGHVTCMAFS 491 (514)
T ss_pred -Cchhhh-hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee-------eccCCCCCC-----cccceEEEEec
Confidence 333333 334677999999999999999887 56888888774310 001221111 12368999999
Q ss_pred ecCCCceEEEEecCCCeEEEEEee
Q 003423 647 KLRSNQTEIRSTGGDGCICYLEYD 670 (821)
Q Consensus 647 ~~~~~~~~l~t~g~Dg~i~iw~~~ 670 (821)
+++.+|+-|-.+|.+.+|.+.
T Consensus 492 ---P~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 492 ---PNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ---CCCceEEeecCCCceeeEeec
Confidence 567899999999999999984
No 141
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=5.5e-19 Score=179.33 Aligned_cols=326 Identities=13% Similarity=0.159 Sum_probs=198.6
Q ss_pred EEEEEcCC---CCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEc
Q 003423 260 FRIEWSSC---GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334 (821)
Q Consensus 260 ~~l~~s~~---~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd 334 (821)
++..|++. ...|+.+.+||.|.++|....... .++........|...|.++.|. ...|++++.|.++++||
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr----~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR----LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWD 128 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcc----hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeee
Confidence 44667652 357999999999999998875431 1111124677899999999998 47999999999999999
Q ss_pred C-CCceeeE--eecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCccc
Q 003423 335 S-DGKQLKM--IKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSE 410 (821)
Q Consensus 335 ~-~~~~~~~--~~~h~~~~i~~l~~~~~~-~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (821)
+ .+++... +.+|.+ .|.+++|.|.. ..+++||.||.|.|||++-.....++... ..++... ...+.
T Consensus 129 vk~s~l~G~~~~~GH~~-SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~--------~~~~~~~-n~~pt 198 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTG-SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD--------NRIYGRH-NTAPT 198 (720)
T ss_pred eccceeecceeeccccc-ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh--------hhhhccc-cCCCC
Confidence 9 5666655 889999 69999999965 57899999999999999543221111100 0000000 00000
Q ss_pred ceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEe
Q 003423 411 QIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALG 490 (821)
Q Consensus 411 ~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g 490 (821)
+.... ...+. +-++.. ......++.+-+ .++..||++
T Consensus 199 pskp~---~kr~~--------k~kA~s-----------------------~ti~ssvTvv~f---------kDe~tlaSa 235 (720)
T KOG0321|consen 199 PSKPL---KKRIR--------KWKAAS-----------------------NTIFSSVTVVLF---------KDESTLASA 235 (720)
T ss_pred CCchh---hcccc--------cccccc-----------------------CceeeeeEEEEE---------eccceeeec
Confidence 00000 00000 000000 000111222222 245777877
Q ss_pred cC-CccEEEEEecCCCCCCc--ceeEEeeccCccceeeeeE-EeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCcc
Q 003423 491 DG-KGNMTIVRVVGDVHTPQ--LSFTFTWSAGIERQLLGTY-WCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKT 566 (821)
Q Consensus 491 ~~-~g~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 566 (821)
+. |+.|++||+........ ......+... ..+..+.. .+....|.+|++.+.|+.|++|++.....
T Consensus 236 ga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~-skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~--------- 305 (720)
T KOG0321|consen 236 GAADSTIKVWDLRKNYTAYRQEPRGSDKYPTH-SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI--------- 305 (720)
T ss_pred cCCCcceEEEeecccccccccCCCcccCccCc-ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc---------
Confidence 66 99999999987554211 1111111111 22222222 23444568888888899999999987521
Q ss_pred ceeeeeEEEecccC-ce-EEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccCCcceEEEE
Q 003423 567 NNVFLVAEFSSCFG-AR-IMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLS 644 (821)
Q Consensus 567 ~~~~~~~~~~~~h~-~~-I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~ 644 (821)
..++.| .++. .. -..-..+|++.+|++|+.|+..++|.++.. ..+...+. .| ...||+++
T Consensus 306 ---sP~~~~-sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~------------e~~~~~l~-Gh-t~eVt~V~ 367 (720)
T KOG0321|consen 306 ---SPVAEF-SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP------------EAPPALLL-GH-TREVTTVR 367 (720)
T ss_pred ---Cchhhc-cCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc------------cCChhhhh-Cc-ceEEEEEe
Confidence 111112 1111 00 112335799999999999999999999853 22233332 55 55899999
Q ss_pred EEecCCCceEEEEecCCCeEEEEEeecC
Q 003423 645 VAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (821)
Q Consensus 645 ~~~~~~~~~~l~t~g~Dg~i~iw~~~~~ 672 (821)
|.|. ...-++|+++|..++||++.++
T Consensus 368 w~pS--~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 368 WLPS--ATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eccc--cCCCceeeccCcceEEEeccCc
Confidence 9984 3455899999999999999553
No 142
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=3.8e-18 Score=164.41 Aligned_cols=350 Identities=15% Similarity=0.160 Sum_probs=215.6
Q ss_pred CcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecC
Q 003423 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (821)
Q Consensus 176 ~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 255 (821)
|....++++.|...+. +.+|+|+.|..|++|.+...+... +..+......+..|
T Consensus 11 H~~~pv~s~dfq~n~~--~~laT~G~D~~iriW~v~r~~~~~------------------------~~~~V~y~s~Ls~H 64 (434)
T KOG1009|consen 11 HDHEPVYSVDFQKNSL--NKLATAGGDKDIRIWKVNRSEPGG------------------------GDMKVEYLSSLSRH 64 (434)
T ss_pred cCCCceEEEEeccCcc--cceecccCccceeeeeeeecCCCC------------------------CceeEEEeecccCC
Confidence 3445678888865533 399999999999999988221111 00144566778899
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCccc------CCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC
Q 003423 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK------DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (821)
Q Consensus 256 ~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d 327 (821)
...|+++.|+|+|+.||||+++|.|.+|....-... +......+....+.+|...|+.++|+ +.++++++.|
T Consensus 65 ~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~d 144 (434)
T KOG1009|consen 65 TRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVD 144 (434)
T ss_pred cceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeecc
Confidence 999999999999999999999999999987721110 00011122225788899999999998 5899999999
Q ss_pred CeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCC---ccccccCCCcceEEe
Q 003423 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESH---PEAKEFNGRTEIFSI 403 (821)
Q Consensus 328 g~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 403 (821)
.++++||+ .|+....+..|.. .+..++|+|-++++++-+.|...+.+++........-++ ............+.+
T Consensus 145 ns~~l~Dv~~G~l~~~~~dh~~-yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rL 223 (434)
T KOG1009|consen 145 NSVRLWDVHAGQLLAILDDHEH-YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRL 223 (434)
T ss_pred ceEEEEEeccceeEeecccccc-ccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeee
Confidence 99999999 8999999999988 599999999999999999998777777643211100000 000000001111111
Q ss_pred ecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeec-cCCcceEEEeccCCCCCCCCC
Q 003423 404 KIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQV-SEGMPIICMDLLSNEPKYPCG 482 (821)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~s~~ 482 (821)
. .-.......+.++|+|+|.++++-. |... ........-.-+... ....|+.++.. +
T Consensus 224 f---------hDeTlksFFrRlsfTPdG~llvtPa-g~~~---~g~~~~~n~tYvfsrk~l~rP~~~lp~---------~ 281 (434)
T KOG1009|consen 224 F---------HDETLKSFFRRLSFTPDGSLLVTPA-GLFK---VGGGVFRNTSYVFSRKDLKRPAARLPS---------P 281 (434)
T ss_pred e---------ecCchhhhhhhcccCCCCcEEEccc-ceee---eCCceeeceeEeeccccccCceeecCC---------C
Confidence 0 0011124578899999998887653 2211 000000000001111 11222222211 2
Q ss_pred CCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCccccc
Q 003423 483 IDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYE 562 (821)
Q Consensus 483 ~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 562 (821)
....+++... -..|.+......+. .+...-+++++......|++||.+..
T Consensus 282 ~k~~lavr~~---pVy~elrp~~~~~~--------------------~~~lpyrlvfaiAt~~svyvydtq~~------- 331 (434)
T KOG1009|consen 282 KKPALAVRFS---PVYYELRPLSSEKF--------------------LFVLPYRLVFAIATKNSVYVYDTQTL------- 331 (434)
T ss_pred CcceEEEEee---eeEEEecccccccc--------------------ccccccceEEEEeecceEEEeccccc-------
Confidence 3334444432 22334332111100 01111244454445668999998765
Q ss_pred CCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCc
Q 003423 563 SSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 563 ~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~ 611 (821)
........-|-..||.++|++||..|+..|.||...+--++.
T Consensus 332 -------~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 332 -------EPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred -------cceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence 222222345888999999999999999999999988877764
No 143
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=2.3e-18 Score=161.27 Aligned_cols=308 Identities=17% Similarity=0.227 Sum_probs=214.2
Q ss_pred eEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeec--cCCCCcE
Q 003423 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL--PRLSHWV 135 (821)
Q Consensus 58 ~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I 135 (821)
..++..+..+|.+++|.+-- ...+ ...+++.|.+.+.+|+...+. ....++.. ..|+...
T Consensus 31 ~~l~ed~~~~I~gv~fN~~~--~~~e----~~vfatvG~~rvtiy~c~~d~------------~ir~lq~y~D~d~~Esf 92 (385)
T KOG1034|consen 31 NHLKEDHNKPIFGVAFNSFL--GCDE----PQVFATVGGNRVTIYECPGDG------------GIRLLQSYADEDHDESF 92 (385)
T ss_pred eehhccCCCccceeeeehhc--CCCC----CceEEEeCCcEEEEEEECCcc------------ceeeeeeccCCCCCcce
Confidence 33444455689999987431 1111 358899999999999987432 12233332 2366778
Q ss_pred EEEEEeecCCC-CCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCC
Q 003423 136 FDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (821)
Q Consensus 136 ~~~~~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~ 214 (821)
+.++|+-...+ ..+||+|+.-|.|+|.|+.+++....+.+|... +..+.+++ .+.++|++++.|..|++|+++
T Consensus 93 ytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~s-INeik~~p--~~~qlvls~SkD~svRlwnI~--- 166 (385)
T KOG1034|consen 93 YTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGS-INEIKFHP--DRPQLVLSASKDHSVRLWNIQ--- 166 (385)
T ss_pred EEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCcc-chhhhcCC--CCCcEEEEecCCceEEEEecc---
Confidence 88888763333 458899999999999999999998888877654 44555653 356799999999999999999
Q ss_pred cccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE---ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCccc
Q 003423 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (821)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~ 291 (821)
+..++..+ .||.+.|.++.|+++|.+++||+.|.++++|++...+..
T Consensus 167 ------------------------------~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~ 216 (385)
T KOG1034|consen 167 ------------------------------TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFK 216 (385)
T ss_pred ------------------------------CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHh
Confidence 55566555 579999999999999999999999999999999854321
Q ss_pred ----CC------CCceee-----e-c--eEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC-C-C-------------c
Q 003423 292 ----DS------DSIEEV-----G-S--SVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-D-G-------------K 338 (821)
Q Consensus 292 ----~~------~~~~~~-----~-~--~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~-~-~-------------~ 338 (821)
.+ .+..++ . + .+..-|...|-|+.|-++++++-+-++.|..|.. . + .
T Consensus 217 ~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~T 296 (385)
T KOG1034|consen 217 NKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATT 296 (385)
T ss_pred hhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCcccee
Confidence 00 000000 0 0 1344588888899999999999999999999987 1 1 1
Q ss_pred eeeEeecccCCCeEEEEE--ecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccC
Q 003423 339 QLKMIKEHIGRGIWRCLY--DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTD 416 (821)
Q Consensus 339 ~~~~~~~h~~~~i~~l~~--~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (821)
.+..+..... .||-+.| +|-++.||.|...|.|.+||++....... ....-.
T Consensus 297 i~~~~~~~~c-~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~-------------------------ttl~~s 350 (385)
T KOG1034|consen 297 ILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKC-------------------------TTLTHS 350 (385)
T ss_pred eeeEeccCcc-ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccC-------------------------ceEEec
Confidence 2333444444 4887765 56689999999999999999965321100 000011
Q ss_pred CCCcceEEEEeecCCeEEE-EecCCcEEEE
Q 003423 417 SKSEYVRCLHLTSEDTLYI-ATNHGYLYHT 445 (821)
Q Consensus 417 ~~~~~i~~l~f~~~~~~l~-~~~~g~~~~~ 445 (821)
.....|+..+|+.++.+++ .+.++.+..+
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 1235699999999986655 4566666544
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=166.33 Aligned_cols=251 Identities=18% Similarity=0.254 Sum_probs=170.8
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEe-ecCCeEEEEECCC----------------CeeeeEEEeeccccEEeEEeccccC
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLA-GSGSQVLLYDLEA----------------GTLIRPFQVFHGIRLHGISCNFINC 78 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~-g~~~~i~iwd~~t----------------~~~~~~~~~~~~~~i~~i~~~~~~~ 78 (821)
|.+.|+-+..+..++ ..+.++ ++.|.|.|||+.. .+++.++..+.. .=.++.|+|..
T Consensus 150 h~g~~NRvr~~~~~~----~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~-EGy~LdWSp~~- 223 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGN----EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG-EGYGLDWSPIK- 223 (440)
T ss_pred cccccceeeecccCC----cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc-cceeeeccccc-
Confidence 566677777662222 233333 3369999999852 234555555443 46678888641
Q ss_pred CCCCCccceeeEEEEEcC--CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECC
Q 003423 79 TEGSVSTRVTFEVALFGE--KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156 (821)
Q Consensus 79 ~~~~~~~~~~~~l~~~g~--~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d 156 (821)
.-.+..|| +.|++|....+.- ..-...+.+|+..|-+++||| .....+|+|+.|
T Consensus 224 ----------~g~LlsGDc~~~I~lw~~~~g~W------------~vd~~Pf~gH~~SVEDLqWSp--tE~~vfaScS~D 279 (440)
T KOG0302|consen 224 ----------TGRLLSGDCVKGIHLWEPSTGSW------------KVDQRPFTGHTKSVEDLQWSP--TEDGVFASCSCD 279 (440)
T ss_pred ----------ccccccCccccceEeeeeccCce------------eecCccccccccchhhhccCC--ccCceEEeeecC
Confidence 12223344 7889998876431 112345678999999999999 356789999999
Q ss_pred CcEEEEEccCCce---eEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCC
Q 003423 157 NSIRVWDISNSSI---ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (821)
Q Consensus 157 ~~i~iwd~~~~~~---~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 233 (821)
|+|+|||++.+.. +.. +.+.. -+..+.+ +.+..+||+|+.||++.|||++.
T Consensus 280 gsIrIWDiRs~~~~~~~~~-kAh~s-DVNVISW---nr~~~lLasG~DdGt~~iwDLR~--------------------- 333 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAVST-KAHNS-DVNVISW---NRREPLLASGGDDGTLSIWDLRQ--------------------- 333 (440)
T ss_pred ceEEEEEecCCCccceeEe-eccCC-ceeeEEc---cCCcceeeecCCCceEEEEEhhh---------------------
Confidence 9999999998732 222 33332 2333333 34555999999999999999981
Q ss_pred cceeeecccccceeeEEEEecCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecccCccc------CCCCceeeeceEEec
Q 003423 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWK------DSDSIEEVGSSVLYG 306 (821)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-~~~l~s~s~Dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~ 306 (821)
-...+++..++-|..+|++|.|+|. ...|++++.|.+|.|||+....-. ....++.+.++.++-
T Consensus 334 ---------~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV 404 (440)
T KOG0302|consen 334 ---------FKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV 404 (440)
T ss_pred ---------ccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE
Confidence 1245788999999999999999995 457888899999999999754321 000122234456666
Q ss_pred cc--eeEEEEEEc---CCEEEEEeCCCeEE
Q 003423 307 HN--ARVWDCCLT---DSFIITAGEDCTCR 331 (821)
Q Consensus 307 h~--~~i~~v~~~---~~~l~s~~~dg~i~ 331 (821)
|. ..+..+.|+ |.++++.+.||...
T Consensus 405 HqGQke~KevhWH~QiPG~lvsTa~dGfnV 434 (440)
T KOG0302|consen 405 HQGQKEVKEVHWHRQIPGLLVSTAIDGFNV 434 (440)
T ss_pred ecchhHhhhheeccCCCCeEEEecccceeE
Confidence 64 458889998 68999999998543
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.4e-18 Score=170.96 Aligned_cols=293 Identities=14% Similarity=0.157 Sum_probs=207.1
Q ss_pred ceEEeecCCeEEEEECCCCeeeeEEEeec-cccEEeEEeccccCCCCCCccceeeEEEE--EcCCeEEEEEEeecCCCCC
Q 003423 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVAL--FGEKRVKLFELNFELSPNS 112 (821)
Q Consensus 36 ~~l~~g~~~~i~iwd~~t~~~~~~~~~~~-~~~i~~i~~~~~~~~~~~~~~~~~~~l~~--~g~~~v~i~~~~~~~~~~~ 112 (821)
.+.+++.+..+++||....+....+..+. ...+..+.|... ..++++ +||+.+++|.-..+. +
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~-----------n~lvvas~~gdk~~~~~~K~g~~-~-- 69 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRR-----------NFLVVASMAGDKVMRIKEKDGKT-P-- 69 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCCCCCcceeeecccc-----------ceEEEeecCCceeEEEecccCCC-C--
Confidence 37777888899999998766554443222 223777777743 123333 367889998755321 0
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCcc
Q 003423 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (821)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~ 192 (821)
.......+.+. .-.|++... ...++++|+..+.|+|||+....+.+.++.|. ..+..+.| +..
T Consensus 70 --------~Vp~~~k~~gd--~~~Cv~~~s---~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~-stvt~v~Y---N~~ 132 (673)
T KOG4378|consen 70 --------EVPRVRKLTGD--NAFCVACAS---QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ-STVTYVDY---NNT 132 (673)
T ss_pred --------ccceeeccccc--hHHHHhhhh---cceeeeccCcCceeeehhhHHHHHhhhccCCc-ceeEEEEe---cCC
Confidence 12233333333 334555444 45699999999999999999776777777776 44555555 467
Q ss_pred CeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecC-CCcEEEEEEcCCCC-E
Q 003423 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH-EGSIFRIEWSSCGS-K 270 (821)
Q Consensus 193 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~l~~s~~~~-~ 270 (821)
+.+||+++..|.|.|.... +...-.+|.-. ...|.-+.|+|..+ +
T Consensus 133 DeyiAsvs~gGdiiih~~~---------------------------------t~~~tt~f~~~sgqsvRll~ys~skr~l 179 (673)
T KOG4378|consen 133 DEYIASVSDGGDIIIHGTK---------------------------------TKQKTTTFTIDSGQSVRLLRYSPSKRFL 179 (673)
T ss_pred cceeEEeccCCcEEEEecc---------------------------------cCccccceecCCCCeEEEeeccccccee
Confidence 8899999999999999988 33333344322 34566899999776 5
Q ss_pred EEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcCC-CceeeEeecc
Q 003423 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSD-GKQLKMIKEH 346 (821)
Q Consensus 271 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~~-~~~~~~~~~h 346 (821)
|.+++++|.|.+||+..... .- .....|.++...++|+ +.+|++.|.|..|.+||.. .+....+..
T Consensus 180 L~~asd~G~VtlwDv~g~sp-----~~----~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y- 249 (673)
T KOG4378|consen 180 LSIASDKGAVTLWDVQGMSP-----IF----HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY- 249 (673)
T ss_pred eEeeccCCeEEEEeccCCCc-----cc----chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-
Confidence 68899999999999988654 21 3567899999999998 4799999999999999994 333444443
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEE
Q 003423 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (821)
Q Consensus 347 ~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 426 (821)
.. +...++|.++|.+|+.|...|.|..||++.. ..++.....|...|++++
T Consensus 250 ~~-Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~----------------------------k~Pv~v~sah~~sVt~va 300 (673)
T KOG4378|consen 250 SH-PLSTVAFSECGTYLCAGNSKGELIAYDMRST----------------------------KAPVAVRSAHDASVTRVA 300 (673)
T ss_pred cC-CcceeeecCCceEEEeecCCceEEEEecccC----------------------------CCCceEeeecccceeEEE
Confidence 23 6899999999999999999999999999652 112233345566699999
Q ss_pred eecCC
Q 003423 427 LTSED 431 (821)
Q Consensus 427 f~~~~ 431 (821)
|-+..
T Consensus 301 fq~s~ 305 (673)
T KOG4378|consen 301 FQPSP 305 (673)
T ss_pred eeecc
Confidence 98754
No 146
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=8.5e-18 Score=178.14 Aligned_cols=235 Identities=12% Similarity=0.149 Sum_probs=170.8
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccC-cccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEE
Q 003423 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE-YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRV 332 (821)
Q Consensus 254 ~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~i 332 (821)
+|...-+.|+|.|+|++|++|+.||.|++|+.... +. . ..+.-+...|.+++-..++|++++++++|.+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-----P-----~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-----P-----ETIDISGELVSSIACYSNHFLTGSEQNTVLR 80 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-----C-----chhhccCceeEEEeecccceEEeeccceEEE
Confidence 78989999999999999999999999999987765 22 2 2333378889999988889999999999999
Q ss_pred EcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccc
Q 003423 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQ 411 (821)
Q Consensus 333 wd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (821)
|.. ++..-..+....- +++.++++.+|+++|.||.|-.|++.++... ..
T Consensus 81 y~fps~~~~~iL~Rftl-p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-----------------------------s~ 130 (933)
T KOG1274|consen 81 YKFPSGEEDTILARFTL-PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-----------------------------SQ 130 (933)
T ss_pred eeCCCCCccceeeeeec-cceEEEEecCCcEEEeecCceeEEEEecccc-----------------------------ch
Confidence 998 4443334444444 6999999999999999999999999988431 01
Q ss_pred eeccCCCCcceEEEEeecCCeEEEEe-cCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEe
Q 003423 412 IRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALG 490 (821)
Q Consensus 412 ~~~~~~~~~~i~~l~f~~~~~~l~~~-~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g 490 (821)
...+.+|..+|.++.|+|++.+|++. .+|.++
T Consensus 131 ~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~----------------------------------------------- 163 (933)
T KOG1274|consen 131 EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQ----------------------------------------------- 163 (933)
T ss_pred heeecccCCceeeeeEcCCCCEEEEEecCceEE-----------------------------------------------
Confidence 12234456677888888777665543 345554
Q ss_pred cCCccEEEEEecCCCCC--------------CcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCC
Q 003423 491 DGKGNMTIVRVVGDVHT--------------PQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPF 556 (821)
Q Consensus 491 ~~~g~i~i~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 556 (821)
+|+++++.+. ........|+ |++..+++...|+.|++|+.....
T Consensus 164 -------iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~---------------Pk~g~la~~~~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 164 -------IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWH---------------PKGGTLAVPPVDNTVKVYSRKGWE 221 (933)
T ss_pred -------EEEcccchhhhhcccCCccccccccceeeeeeec---------------CCCCeEEeeccCCeEEEEccCCce
Confidence 3333332221 1111234444 555667777889999999988773
Q ss_pred CcccccCCccceeeeeEEE-ecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCc
Q 003423 557 SSVCYESSKTNNVFLVAEF-SSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~-~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~ 611 (821)
....+ ...+...++++.|+|+|+|||+++.||.|.|||+++
T Consensus 222 --------------~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 222 --------------LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred --------------eheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 22222 123444599999999999999999999999999883
No 147
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=3.6e-20 Score=190.43 Aligned_cols=233 Identities=23% Similarity=0.356 Sum_probs=194.5
Q ss_pred ccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEE
Q 003423 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIV 207 (821)
Q Consensus 128 ~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~v 207 (821)
.-.|...+.++..-. .++.+++|+.|-.+-+|.+.....+..+.+|+. .+-++.| +.+..+|++|+.+|.|++
T Consensus 24 ~~~hsaav~~lk~~~---s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes-pIeSl~f---~~~E~LlaagsasgtiK~ 96 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRK---SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES-PIESLTF---DTSERLLAAGSASGTIKV 96 (825)
T ss_pred hhhhhhhhceeeeec---cceeeccCCCceeeccccccCCchhheeeccCC-cceeeec---CcchhhhcccccCCceee
Confidence 346777788888755 788999999999999999887777777777665 4567777 567889999999999999
Q ss_pred EEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeccc
Q 003423 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (821)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~ 287 (821)
||+. ..+.+++|.||...+..|.|+|-+.+.|+++.|..+++||++.
T Consensus 97 wDle---------------------------------eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk 143 (825)
T KOG0267|consen 97 WDLE---------------------------------EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK 143 (825)
T ss_pred eehh---------------------------------hhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc
Confidence 9999 7778889999999999999999999999999999999999996
Q ss_pred CcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEE
Q 003423 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (821)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~ 364 (821)
..+ . ..+.+|...|..+.|+ +.+++++++|.++++||+ .|+.+..|..|.+ .+.++.|+|..-+++
T Consensus 144 ~Gc-----~-----~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla 212 (825)
T KOG0267|consen 144 KGC-----S-----HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLA 212 (825)
T ss_pred cCc-----e-----eeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-cccccccCchhhhhc
Confidence 555 2 5778899999999998 579999999999999999 8999999999999 499999999999999
Q ss_pred EEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCC
Q 003423 365 TAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (821)
Q Consensus 365 tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g 440 (821)
+|+.|+++++||+++-.+ +. ..+.....|.+.+|++++..+....+-
T Consensus 213 ~Gs~d~tv~f~dletfe~------------------I~-----------s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 213 PGSSDRTVRFWDLETFEV------------------IS-----------SGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cCCCCceeeeeccceeEE------------------ee-----------ccCCccCCceeeeecCCceeeecCchh
Confidence 999999999999964211 00 001113458999999999877765443
No 148
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=3.2e-18 Score=163.13 Aligned_cols=213 Identities=19% Similarity=0.282 Sum_probs=158.3
Q ss_pred eeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC----------------ceeEEEccCcceeEEEEeec
Q 003423 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS----------------SIILEVHSPERCLLYSMKLW 187 (821)
Q Consensus 124 ~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~----------------~~~~~~~~~~~~~~~s~~~~ 187 (821)
......+|.+.+.-+.-.+.. +..+.|+=+..|.|.|||+... +.+.++..|. ..-|.+++.
T Consensus 143 ~~~~~i~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk-~EGy~LdWS 220 (440)
T KOG0302|consen 143 IEMKSIPHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK-GEGYGLDWS 220 (440)
T ss_pred ccccccccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC-ccceeeecc
Confidence 344455677888888877711 2345566678999999998632 1233344443 334555553
Q ss_pred cCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCC
Q 003423 188 GDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC 267 (821)
Q Consensus 188 ~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 267 (821)
+ .....+++|.--+.|++|...++. -..-...+.+|+.+|-.|+|||.
T Consensus 221 p--~~~g~LlsGDc~~~I~lw~~~~g~------------------------------W~vd~~Pf~gH~~SVEDLqWSpt 268 (440)
T KOG0302|consen 221 P--IKTGRLLSGDCVKGIHLWEPSTGS------------------------------WKVDQRPFTGHTKSVEDLQWSPT 268 (440)
T ss_pred c--ccccccccCccccceEeeeeccCc------------------------------eeecCccccccccchhhhccCCc
Confidence 2 234468888888999999987210 01112234589999999999996
Q ss_pred C-CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC----CCcee
Q 003423 268 G-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS----DGKQL 340 (821)
Q Consensus 268 ~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~----~~~~~ 340 (821)
. ..|+|||-||+|+|||++.+.. ..+ .....|.+.|+.+.|+ -.+|++|+.||+++|||+ .++++
T Consensus 269 E~~vfaScS~DgsIrIWDiRs~~~-----~~~---~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pV 340 (440)
T KOG0302|consen 269 EDGVFASCSCDGSIRIWDIRSGPK-----KAA---VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPV 340 (440)
T ss_pred cCceEEeeecCceEEEEEecCCCc-----cce---eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcc
Confidence 5 5899999999999999998744 222 3558899999999999 258999999999999999 47889
Q ss_pred eEeecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEEcCC
Q 003423 341 KMIKEHIGRGIWRCLYDSL-SSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 341 ~~~~~h~~~~i~~l~~~~~-~~~l~tg~~dg~I~iwd~~~ 379 (821)
.+++.|.. +|+++.|+|. ...|+++|.|..|.+||+.-
T Consensus 341 A~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 341 ATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99999999 7999999985 46889999999999999943
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=7e-18 Score=158.00 Aligned_cols=326 Identities=13% Similarity=0.167 Sum_probs=214.8
Q ss_pred eeeeeEEEEEeccCCCCCCcc-eEEeecCCeEEEEECCCC---eeeeEEEee-ccccEEeEEeccccCCCCCCccceeeE
Q 003423 16 YLGEISALCFVHLPSHLSSLP-FLLAGSGSQVLLYDLEAG---TLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFE 90 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~-~l~~g~~~~i~iwd~~t~---~~~~~~~~~-~~~~i~~i~~~~~~~~~~~~~~~~~~~ 90 (821)
|..+|..++|....+ .+.. .+++..+..+.+|..... ++++++... +.+.-..++|.-+ ..++ +.+
T Consensus 37 ~~~~I~gv~fN~~~~--~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd----~~~~---~p~ 107 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLG--CDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYD----SNTG---NPF 107 (385)
T ss_pred CCCccceeeeehhcC--CCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEec----CCCC---Cee
Confidence 667899999982221 1123 444455689999998753 334444322 2334555666522 1111 246
Q ss_pred EEEEc-CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce
Q 003423 91 VALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (821)
Q Consensus 91 l~~~g-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~ 169 (821)
++++| -|.|+|.|+... +....+.+|.+.|..+.|+|. +.++|++|+.|.+||+|++++..+
T Consensus 108 la~~G~~GvIrVid~~~~---------------~~~~~~~ghG~sINeik~~p~--~~qlvls~SkD~svRlwnI~~~~C 170 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSG---------------QCSKNYRGHGGSINEIKFHPD--RPQLVLSASKDHSVRLWNIQTDVC 170 (385)
T ss_pred EEeecceeEEEEEecchh---------------hhccceeccCccchhhhcCCC--CCcEEEEecCCceEEEEeccCCeE
Confidence 66666 489999998854 567788999999999999992 457899999999999999999999
Q ss_pred eEEEcc--CcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccccccee
Q 003423 170 ILEVHS--PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (821)
Q Consensus 170 ~~~~~~--~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (821)
+..+.+ .++..+.|+.| +.++.+|++++.|.+|++|++...+.....+........+....+... .....
T Consensus 171 v~VfGG~egHrdeVLSvD~---~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~-----~~~fp 242 (385)
T KOG1034|consen 171 VAVFGGVEGHRDEVLSVDF---SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTP-----KTHFP 242 (385)
T ss_pred EEEecccccccCcEEEEEE---cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcc-----ccccc
Confidence 887764 34556888888 688999999999999999999843321111111111101110000000 00111
Q ss_pred eEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCccc----CCCCceeeeceEEeccceeEEEEEEc----CC
Q 003423 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK----DSDSIEEVGSSVLYGHNARVWDCCLT----DS 319 (821)
Q Consensus 248 ~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~h~~~i~~v~~~----~~ 319 (821)
...+-.-|...|-|+.|- |++++|-|-++.|..|....-+.. .+..........+.-....||-+.|. .+
T Consensus 243 ~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~ 320 (385)
T KOG1034|consen 243 DFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK 320 (385)
T ss_pred cccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH
Confidence 112345699999999995 679999999999999988422110 00001111112344456678988887 48
Q ss_pred EEEEEeCCCeEEEEcCCCc---eeeEee-cccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 320 FIITAGEDCTCRVWGSDGK---QLKMIK-EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 320 ~l~s~~~dg~i~iwd~~~~---~~~~~~-~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
.|+.|.+.|.+.+||++.. ...++. ...++.|...+|+.++..|+....|+.|.-||.
T Consensus 321 ~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 321 MLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 9999999999999999321 222332 223346899999999999999999999999985
No 150
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=5.2e-18 Score=170.90 Aligned_cols=293 Identities=16% Similarity=0.208 Sum_probs=213.8
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|.+-|.+|... |. +.+|++|+ ||+|+||.+.||+++++++. .+ .|.+++|+|.. + ..+|+++
T Consensus 399 Htg~Vr~iSvd--p~----G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~-~I~~vaw~P~~-----~----~~vLAvA 461 (733)
T KOG0650|consen 399 HTGLVRSISVD--PS----GEWLASGSDDGTVRIWEIATGRCVRTVQF-DS-EIRSVAWNPLS-----D----LCVLAVA 461 (733)
T ss_pred cCCeEEEEEec--CC----cceeeecCCCCcEEEEEeecceEEEEEee-cc-eeEEEEecCCC-----C----ceeEEEE
Confidence 78889999999 87 78999998 79999999999999999985 33 69999999763 2 2355555
Q ss_pred cCCeEEEEEEeecCCCCCC------------CCCccc-ccc--------c-eeeeccCCCCcEEEEEEeecCCCCCEEEE
Q 003423 95 GEKRVKLFELNFELSPNSQ------------YQPETC-VNL--------S-LVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~------------~~~~~~-~~~--------~-~~~~~~~h~~~I~~~~~~~~~~~~~~l~t 152 (821)
-+..+-|.+-..++....+ ..++.. +.+ + -+...-.|...|..+.|+- .|.+|+|
T Consensus 462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr---kGDYlat 538 (733)
T KOG0650|consen 462 VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR---KGDYLAT 538 (733)
T ss_pred ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec---CCceEEE
Confidence 4444666654433200000 011100 000 0 1234446888999999999 9999998
Q ss_pred EEC---CCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCC
Q 003423 153 GCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (821)
Q Consensus 153 ~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 229 (821)
... ...|.|.++........+.. .+..+..+.|++. ..++++++. ..|+|||+.
T Consensus 539 V~~~~~~~~VliHQLSK~~sQ~PF~k-skG~vq~v~FHPs---~p~lfVaTq-~~vRiYdL~------------------ 595 (733)
T KOG0650|consen 539 VMPDSGNKSVLIHQLSKRKSQSPFRK-SKGLVQRVKFHPS---KPYLFVATQ-RSVRIYDLS------------------ 595 (733)
T ss_pred eccCCCcceEEEEecccccccCchhh-cCCceeEEEecCC---CceEEEEec-cceEEEehh------------------
Confidence 755 45688888876654433322 2234556677644 445555544 889999998
Q ss_pred CCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccce
Q 003423 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (821)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 309 (821)
+...+..+..-...|..++.+|.|..|+.++.|+.+..+|+.-... . . .++.-|..
T Consensus 596 ---------------kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk-----P--y--k~lr~H~~ 651 (733)
T KOG0650|consen 596 ---------------KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK-----P--Y--KTLRLHEK 651 (733)
T ss_pred ---------------HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc-----h--h--HHhhhhhh
Confidence 5555666666677899999999999999999999999999987533 1 1 57888999
Q ss_pred eEEEEEEcC--CEEEEEeCCCeEEEEcC-------CC---ceeeEeecccCC---CeEEEEEecCCCEEEEEeCCCcEEE
Q 003423 310 RVWDCCLTD--SFIITAGEDCTCRVWGS-------DG---KQLKMIKEHIGR---GIWRCLYDSLSSLLVTAGFDSAIKV 374 (821)
Q Consensus 310 ~i~~v~~~~--~~l~s~~~dg~i~iwd~-------~~---~~~~~~~~h~~~---~i~~l~~~~~~~~l~tg~~dg~I~i 374 (821)
.+.+++|++ .++++|+.||++.|+-- .. -+++.+++|... +|....|+|...+|+++|+||+|++
T Consensus 652 avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirl 731 (733)
T KOG0650|consen 652 AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRL 731 (733)
T ss_pred hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEe
Confidence 999999995 78999999999999853 11 356677777652 3778889999999999999999999
Q ss_pred E
Q 003423 375 H 375 (821)
Q Consensus 375 w 375 (821)
|
T Consensus 732 f 732 (733)
T KOG0650|consen 732 F 732 (733)
T ss_pred e
Confidence 8
No 151
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.80 E-value=4.4e-17 Score=165.91 Aligned_cols=269 Identities=14% Similarity=0.206 Sum_probs=195.4
Q ss_pred cEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCC
Q 003423 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (821)
Q Consensus 67 ~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~ 146 (821)
-|+.++|-|++ ..++++.+..+.+||.+.+ ..+.++++|++.|+|++|+. +
T Consensus 14 ci~d~afkPDG-----------sqL~lAAg~rlliyD~ndG---------------~llqtLKgHKDtVycVAys~---d 64 (1081)
T KOG1538|consen 14 CINDIAFKPDG-----------TQLILAAGSRLLVYDTSDG---------------TLLQPLKGHKDTVYCVAYAK---D 64 (1081)
T ss_pred chheeEECCCC-----------ceEEEecCCEEEEEeCCCc---------------ccccccccccceEEEEEEcc---C
Confidence 48889999775 3666667788999998854 46889999999999999999 9
Q ss_pred CCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcc
Q 003423 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (821)
Q Consensus 147 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 226 (821)
|+.+|+|+.|..|.+|.-.-. ..++..++..+.+|.| +|-...+++++. ...-+|+..
T Consensus 65 GkrFASG~aDK~VI~W~~klE---G~LkYSH~D~IQCMsF---NP~~h~LasCsL-sdFglWS~~--------------- 122 (1081)
T KOG1538|consen 65 GKRFASGSADKSVIIWTSKLE---GILKYSHNDAIQCMSF---NPITHQLASCSL-SDFGLWSPE--------------- 122 (1081)
T ss_pred CceeccCCCceeEEEeccccc---ceeeeccCCeeeEeec---CchHHHhhhcch-hhccccChh---------------
Confidence 999999999999999985422 2344455556777777 566677887754 445677766
Q ss_pred cCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEec
Q 003423 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (821)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 306 (821)
+..... ..-...|.+.+|..||++|+-|-.||+|.|=+-...+. +. + ....|
T Consensus 123 ------------------qK~V~K--~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek-----~~-I--~Rpgg 174 (1081)
T KOG1538|consen 123 ------------------QKSVSK--HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK-----VK-I--ERPGG 174 (1081)
T ss_pred ------------------hhhHHh--hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc-----eE-E--eCCCC
Confidence 111111 11235688999999999999999999999886544332 21 1 23456
Q ss_pred cceeEEEEEEcC-------CEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 307 HNARVWDCCLTD-------SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 307 h~~~i~~v~~~~-------~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
..++||+++|++ +.++...-..++..+.++|+.+..-+.-.- ...|+.+.++|.+++.||.|+.+++|.-++
T Consensus 175 ~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR~G 253 (1081)
T KOG1538|consen 175 SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTRDG 253 (1081)
T ss_pred CCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCC-CchhheeccCCcEEEEccCCCceEEEeecC
Confidence 788999999983 688888999999999999988875544333 256899999999999999999999998765
Q ss_pred cCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeE-EEEecCCcEEEE
Q 003423 380 FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTL-YIATNHGYLYHT 445 (821)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~-l~~~~~g~~~~~ 445 (821)
..+.+.. ..+.+|..++..|+++. .+++.+|.+-.+
T Consensus 254 vrLGTvg------------------------------~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 254 VRLGTVG------------------------------EQDSWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred eEEeecc------------------------------ccceeEEEEEEccCCceEEEEEccCeeehh
Confidence 4333221 12455777777776643 344556655433
No 152
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=8.9e-18 Score=163.73 Aligned_cols=243 Identities=15% Similarity=0.210 Sum_probs=173.5
Q ss_pred EEEEE-cCCeEEEEEEeecCCCCCCCCCccc------cccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEE
Q 003423 90 EVALF-GEKRVKLFELNFELSPNSQYQPETC------VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVW 162 (821)
Q Consensus 90 ~l~~~-g~~~v~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iw 162 (821)
++|++ -+..|.|||+...+.-.-.+.-... ...+.-....+|++.|.+++|.- ...+.||+|+.|.+|++|
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~--~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR--NFRNVLASGSADKTVKLW 271 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc--ccceeEEecCCCceEEEE
Confidence 55554 4899999999854311100000000 00111223457999999999986 245789999999999999
Q ss_pred EccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccc
Q 003423 163 DISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (821)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (821)
|+.++++...+..+. ..+.++.+++. ....|++|+.|+++.+.|++. +
T Consensus 272 D~~~g~p~~s~~~~~-k~Vq~l~wh~~--~p~~LLsGs~D~~V~l~D~R~----~------------------------- 319 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHG-KKVQTLEWHPY--EPSVLLSGSYDGTVALKDCRD----P------------------------- 319 (463)
T ss_pred EcCCCCcceehhhcC-CceeEEEecCC--CceEEEeccccceEEeeeccC----c-------------------------
Confidence 999999988887444 45677887754 567999999999999999981 0
Q ss_pred ccceeeEEEEecCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---C
Q 003423 243 QHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---D 318 (821)
Q Consensus 243 ~~~~~~~~~~~~h~~~I~~l~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~ 318 (821)
....... .-.+.|-.++|.|.. ..++++.+||+|+-+|++.... ++ ..+..|..+|.+++++ +
T Consensus 320 -~~s~~~w---k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-------~v--wt~~AHd~~ISgl~~n~~~p 386 (463)
T KOG0270|consen 320 -SNSGKEW---KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-------PV--WTLKAHDDEISGLSVNIQTP 386 (463)
T ss_pred -cccCceE---EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC-------ce--eEEEeccCCcceEEecCCCC
Confidence 0111111 235778999999965 4677888999999999998632 22 6889999999999998 7
Q ss_pred CEEEEEeCCCeEEEEcCCCceeeEeecccCC--CeEEEEEecCC-CEEEEEeCCCcEEEEEcCC
Q 003423 319 SFIITAGEDCTCRVWGSDGKQLKMIKEHIGR--GIWRCLYDSLS-SLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 319 ~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~--~i~~l~~~~~~-~~l~tg~~dg~I~iwd~~~ 379 (821)
++++|++.|+.+++|++.+..-.....|.-+ ...|.++.|+- ..++.||..+.+++||+..
T Consensus 387 ~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 387 GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred cceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 8999999999999999954333333333221 24566777765 4678888888999999943
No 153
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=7.5e-20 Score=188.13 Aligned_cols=215 Identities=17% Similarity=0.283 Sum_probs=182.4
Q ss_pred EEEEEc-CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc
Q 003423 90 EVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 90 ~l~~~g-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
.++.+| +..+-+|.+... ..+..+.+|..+|.++.|++ ...+|++|+.+|+|++||++.++
T Consensus 42 ~~~~Gg~~~k~~L~~i~kp---------------~~i~S~~~hespIeSl~f~~---~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 42 SLVTGGEDEKVNLWAIGKP---------------NAITSLTGHESPIESLTFDT---SERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred eeccCCCceeeccccccCC---------------chhheeeccCCcceeeecCc---chhhhcccccCCceeeeehhhhh
Confidence 444444 567778988743 23445889999999999999 89999999999999999999999
Q ss_pred eeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceee
Q 003423 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (821)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (821)
.++++.++... +.++.| .|-+.+.|+|+.|+.+.+||.+ ...+
T Consensus 104 ~vrtLtgh~~~-~~sv~f---~P~~~~~a~gStdtd~~iwD~R---------------------------------k~Gc 146 (825)
T KOG0267|consen 104 IVRTLTGHLLN-ITSVDF---HPYGEFFASGSTDTDLKIWDIR---------------------------------KKGC 146 (825)
T ss_pred hhhhhhccccC-cceeee---ccceEEeccccccccceehhhh---------------------------------ccCc
Confidence 99888887654 345566 4678899999999999999998 6778
Q ss_pred EEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEEeC
Q 003423 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGE 326 (821)
Q Consensus 249 ~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~~~ 326 (821)
.+.+.+|...|..+.|+|+|++++++++|.+++|||...++. . ..+.+|...+.++.|++ -.+.+|+.
T Consensus 147 ~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~-----~-----~ef~~~e~~v~sle~hp~e~Lla~Gs~ 216 (825)
T KOG0267|consen 147 SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL-----S-----KEFKSHEGKVQSLEFHPLEVLLAPGSS 216 (825)
T ss_pred eeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccc-----c-----cccccccccccccccCchhhhhccCCC
Confidence 889999999999999999999999999999999999998876 3 47788999999999984 57789999
Q ss_pred CCeEEEEcCC-CceeeEeecccCCCeEEEEEecCCCEEEEEeCCC
Q 003423 327 DCTCRVWGSD-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370 (821)
Q Consensus 327 dg~i~iwd~~-~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg 370 (821)
|+++++||++ -+.+........ +|.+.+|+|++..+++|..+.
T Consensus 217 d~tv~f~dletfe~I~s~~~~~~-~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 217 DRTVRFWDLETFEVISSGKPETD-GVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CceeeeeccceeEEeeccCCccC-CceeeeecCCceeeecCchhh
Confidence 9999999995 566666666666 699999999999999887653
No 154
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.80 E-value=6.8e-17 Score=167.87 Aligned_cols=270 Identities=11% Similarity=0.098 Sum_probs=182.9
Q ss_pred CCCCCCcceeeccceee------eeeEEEEEeccCCCCCCcceE-Eee-cCCeEEEEECCCCeeeeEEEeeccccEEeEE
Q 003423 1 MGKKDLSEWRLDVGQYL------GEISALCFVHLPSHLSSLPFL-LAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (821)
Q Consensus 1 ~~~~~i~~w~~~~~~~~------~~Vt~l~~~~~p~~~~~~~~l-~~g-~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~ 72 (821)
+.|+++.+||+.+++.. ..+.+++|+ |+ ++.+ +++ .++.|++||..+++.+..+.... .+..+.
T Consensus 8 ~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~--~d----g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~ 79 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRTFPVGQRPRGITLS--KD----GKLLYVCASDSDTIQVIDLATGEVIGTLPSGP--DPELFA 79 (300)
T ss_pred cCCCEEEEEECCCCceEEEEECCCCCCceEEC--CC----CCEEEEEECCCCeEEEEECCCCcEEEeccCCC--CccEEE
Confidence 35889999999887622 236789999 98 4444 444 47899999999998887766433 356677
Q ss_pred eccccCCCCCCccceeeEEEEE-cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEE
Q 003423 73 CNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (821)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~ 151 (821)
+++++ ..++++. .++.+++||+... +.+..++. ...+.+++|+| ++++++
T Consensus 80 ~~~~g----------~~l~~~~~~~~~l~~~d~~~~---------------~~~~~~~~-~~~~~~~~~~~---dg~~l~ 130 (300)
T TIGR03866 80 LHPNG----------KILYIANEDDNLVTVIDIETR---------------KVLAEIPV-GVEPEGMAVSP---DGKIVV 130 (300)
T ss_pred ECCCC----------CEEEEEcCCCCeEEEEECCCC---------------eEEeEeeC-CCCcceEEECC---CCCEEE
Confidence 77553 2344443 4799999998743 23333332 23468899999 999999
Q ss_pred EEECCC-cEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEE-EEeeCCEEEEEEcccCCcccCCCCCCCcccCC
Q 003423 152 IGCSDN-SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (821)
Q Consensus 152 t~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 229 (821)
++..++ .+.+||..+++.+..+...... .++.+ ++++..++ ++..++.|.+||+.
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~---s~dg~~l~~~~~~~~~v~i~d~~------------------ 187 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVDQRP--RFAEF---TADGKELWVSSEIGGTVSVIDVA------------------ 187 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcCCCc--cEEEE---CCCCCEEEEEcCCCCEEEEEEcC------------------
Confidence 888765 5677899887766554332221 23333 46777775 45569999999998
Q ss_pred CCCCcceeeecccccceeeEEEEecC-----CC--cEEEEEEcCCCCEEE-EEeCCCeEEEEecccCcccCCCCceeeec
Q 003423 230 SSSDFKCFKLQDQQHTAVNLFRLVGH-----EG--SIFRIEWSSCGSKLV-SVSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (821)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~--~I~~l~~s~~~~~l~-s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~ 301 (821)
..+.+..+..+ .. ...+++|+|++++++ +.+.++.+.+||+.+++. .
T Consensus 188 ---------------~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~-----~----- 242 (300)
T TIGR03866 188 ---------------TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV-----L----- 242 (300)
T ss_pred ---------------cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE-----E-----
Confidence 23333332211 11 234688999999754 445677899999987654 2
Q ss_pred eEEeccceeEEEEEEc--CCEEEEE-eCCCeEEEEcC-CCceeeEeecccCCCeEEEEEec
Q 003423 302 SVLYGHNARVWDCCLT--DSFIITA-GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS 358 (821)
Q Consensus 302 ~~~~~h~~~i~~v~~~--~~~l~s~-~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~ 358 (821)
....+...+++++|+ +.+|+++ +.++.|++||+ +++.+..+.... ..+.++++|
T Consensus 243 -~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~ 300 (300)
T TIGR03866 243 -DYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR--LPWGVVVRP 300 (300)
T ss_pred -EEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc--ccceeEeCC
Confidence 222344578899998 4677775 56999999999 677788887543 468888865
No 155
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.4e-17 Score=152.45 Aligned_cols=288 Identities=14% Similarity=0.158 Sum_probs=199.7
Q ss_pred eEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCe
Q 003423 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (821)
Q Consensus 20 Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~ 98 (821)
-+|+.|+ +. +.+||+|. +|.|.|||+.|..+-+.+..|-. +|.+++|++++ ..++.++.|..
T Consensus 26 a~~~~Fs--~~----G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~-pi~sl~WS~dg----------r~LltsS~D~s 88 (405)
T KOG1273|consen 26 AECCQFS--RW----GDYLAVGCANGRVVIYDFDTFRIARMLSAHVR-PITSLCWSRDG----------RKLLTSSRDWS 88 (405)
T ss_pred cceEEec--cC----cceeeeeccCCcEEEEEccccchhhhhhcccc-ceeEEEecCCC----------CEeeeecCCce
Confidence 6789999 87 78999988 89999999999887777776555 89999999775 36777788999
Q ss_pred EEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcc
Q 003423 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER 178 (821)
Q Consensus 99 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~ 178 (821)
+.+||+..++ +++.+. .+.+|+.+.|+|- +.+..+++--+..-.+-++..+....--.....
T Consensus 89 i~lwDl~~gs---------------~l~rir-f~spv~~~q~hp~--k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~ 150 (405)
T KOG1273|consen 89 IKLWDLLKGS---------------PLKRIR-FDSPVWGAQWHPR--KRNKCVATIMEESPVVIDFSDPKHSVLPKDDDG 150 (405)
T ss_pred eEEEeccCCC---------------ceeEEE-ccCccceeeeccc--cCCeEEEEEecCCcEEEEecCCceeeccCCCcc
Confidence 9999998653 334433 5688999999992 333333333333344555544322111111222
Q ss_pred eeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCC-C
Q 003423 179 CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-G 257 (821)
Q Consensus 179 ~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~ 257 (821)
..-.+..-..+.+.+++|++|+..|.+.++|.. +.+++..++--. .
T Consensus 151 dln~sas~~~fdr~g~yIitGtsKGkllv~~a~---------------------------------t~e~vas~rits~~ 197 (405)
T KOG1273|consen 151 DLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE---------------------------------TLECVASFRITSVQ 197 (405)
T ss_pred ccccccccccccCCCCEEEEecCcceEEEEecc---------------------------------hheeeeeeeechhe
Confidence 222222211125789999999999999999998 566666666555 7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCC-CCceeeeceEEe--ccceeEEEEEEc--CCEEEEEe-CCCeEE
Q 003423 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS-DSIEEVGSSVLY--GHNARVWDCCLT--DSFIITAG-EDCTCR 331 (821)
Q Consensus 258 ~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~--~h~~~i~~v~~~--~~~l~s~~-~dg~i~ 331 (821)
.|..+.++..|+.|+.-+.|+.||.|++++-..... ..++.. ..+. -....=.+++|+ +.+++.++ .-..+.
T Consensus 198 ~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~--~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLY 275 (405)
T KOG1273|consen 198 AIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPE--HKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALY 275 (405)
T ss_pred eeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChh--HHHHHHHhhhhhhheeecCCccEEEeccccceeEE
Confidence 899999999999999999999999999874211000 001100 0010 011222467887 46666555 345799
Q ss_pred EEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 332 iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
+|.- .|..++.+.+..+.....+.|+|-...+++- ..|.+++|...
T Consensus 276 IWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 276 IWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred EEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 9998 7999999999887667889999988888877 78999999874
No 156
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.80 E-value=1.9e-16 Score=164.56 Aligned_cols=266 Identities=14% Similarity=0.132 Sum_probs=178.0
Q ss_pred eEEe-ecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE-EcCCeEEEEEEeecCCCCCCC
Q 003423 37 FLLA-GSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQY 114 (821)
Q Consensus 37 ~l~~-g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~-~g~~~v~i~~~~~~~~~~~~~ 114 (821)
++++ +.++.|.+||+.+++.+..+.... .+.++.+++++ ..++++ ..++.+++||....
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~--~~~~l~~~~dg----------~~l~~~~~~~~~v~~~d~~~~------- 63 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQ--RPRGITLSKDG----------KLLYVCASDSDTIQVIDLATG------- 63 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCC--CCCceEECCCC----------CEEEEEECCCCeEEEEECCCC-------
Confidence 4444 458999999999999888887533 36778888653 234344 45789999998743
Q ss_pred CCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEE-ECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccC
Q 003423 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA 193 (821)
Q Consensus 115 ~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~ 193 (821)
+....+..+.+ +..++|+| +++.++++ ..++.|++||+.+++.+..+..... ..++.+ ++++
T Consensus 64 --------~~~~~~~~~~~-~~~~~~~~---~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~~~---~~dg 126 (300)
T TIGR03866 64 --------EVIGTLPSGPD-PELFALHP---NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE--PEGMAV---SPDG 126 (300)
T ss_pred --------cEEEeccCCCC-ccEEEECC---CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC--cceEEE---CCCC
Confidence 23344444443 56788999 88877554 5689999999998877776653322 234444 5788
Q ss_pred eEEEEEeeCC-EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEE
Q 003423 194 LRIASGTIYN-EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV 272 (821)
Q Consensus 194 ~~l~sg~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~ 272 (821)
.+++++..++ .+.+||.. .......+. ....+.+++|+|++++|+
T Consensus 127 ~~l~~~~~~~~~~~~~d~~---------------------------------~~~~~~~~~-~~~~~~~~~~s~dg~~l~ 172 (300)
T TIGR03866 127 KIVVNTSETTNMAHFIDTK---------------------------------TYEIVDNVL-VDQRPRFAEFTADGKELW 172 (300)
T ss_pred CEEEEEecCCCeEEEEeCC---------------------------------CCeEEEEEE-cCCCccEEEECCCCCEEE
Confidence 8998887765 46677876 333333322 233457899999999875
Q ss_pred -EEeCCCeEEEEecccCcccCCCCceeeeceEEeccce--eEEEEEEc--CCEE-EEEeCCCeEEEEcC-CCceeeEeec
Q 003423 273 -SVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA--RVWDCCLT--DSFI-ITAGEDCTCRVWGS-DGKQLKMIKE 345 (821)
Q Consensus 273 -s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~v~~~--~~~l-~s~~~dg~i~iwd~-~~~~~~~~~~ 345 (821)
++..++.|++||+.+++. ...+.......+.. ....++|+ ++++ ++.+.++.+.+||. +++....+.
T Consensus 173 ~~~~~~~~v~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~- 246 (300)
T TIGR03866 173 VSSEIGGTVSVIDVATRKV-----IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL- 246 (300)
T ss_pred EEcCCCCEEEEEEcCccee-----eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-
Confidence 555689999999998654 22110000000111 22457777 3554 44566778999999 555555443
Q ss_pred ccCCCeEEEEEecCCCEEEEE-eCCCcEEEEEcCC
Q 003423 346 HIGRGIWRCLYDSLSSLLVTA-GFDSAIKVHQFQA 379 (821)
Q Consensus 346 h~~~~i~~l~~~~~~~~l~tg-~~dg~I~iwd~~~ 379 (821)
+.. .+++++|+|++++|+++ +.+|.|++||+++
T Consensus 247 ~~~-~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 247 VGQ-RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred eCC-CcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 333 58999999999999886 5689999999965
No 157
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=4.2e-17 Score=164.48 Aligned_cols=274 Identities=13% Similarity=0.115 Sum_probs=183.1
Q ss_pred ceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeC
Q 003423 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (821)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (821)
.+-..+.||.+.|.++...| .|.+||+|+.||+||||.+.++.+++++.... .+.+++|.+. ++..+||++...
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp---~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~--~I~~vaw~P~-~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDP---SGEWLASGSDDGTVRIWEIATGRCVRTVQFDS--EIRSVAWNPL-SDLCVLAVAVGE 464 (733)
T ss_pred eeeeeEeccCCeEEEEEecC---CcceeeecCCCCcEEEEEeecceEEEEEeecc--eeEEEEecCC-CCceeEEEEecC
Confidence 44567889999999999999 99999999999999999999999998766433 3455555333 344556655444
Q ss_pred CEEEEEEcccCC-cccCCCCCCCcccCCCCCCcceeeecc---cccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCC-
Q 003423 203 NEIIVWKVDWEH-VAPLLNSPEGNHAHGSSSDFKCFKLQD---QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD- 277 (821)
Q Consensus 203 g~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~D- 277 (821)
. +.|-+...+. +........+............+..|. ......-++..-.|...|..|.|+..|.||++...|
T Consensus 465 ~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 465 C-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred c-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence 4 6665544221 111111111222211111111222221 111112244445699999999999999999988664
Q ss_pred --CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeE
Q 003423 278 --RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIW 352 (821)
Q Consensus 278 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~ 352 (821)
+.|.|.++..... . .-+....+.|.++.|+| .+++.++ -..|++||+ ....++++..... .|.
T Consensus 544 ~~~~VliHQLSK~~s-----Q-----~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~k-wiS 611 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKS-----Q-----SPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSK-WIS 611 (733)
T ss_pred CcceEEEEecccccc-----c-----CchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCe-eee
Confidence 6788999987654 2 13334456688999995 4555554 458999999 5566666665555 699
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCe
Q 003423 353 RCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT 432 (821)
Q Consensus 353 ~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~ 432 (821)
+++++|.|..|+.|+.|+.+..+|++-. ....+.+..|...+++++|++.=.
T Consensus 612 ~msihp~GDnli~gs~d~k~~WfDldls----------------------------skPyk~lr~H~~avr~Va~H~ryP 663 (733)
T KOG0650|consen 612 SMSIHPNGDNLILGSYDKKMCWFDLDLS----------------------------SKPYKTLRLHEKAVRSVAFHKRYP 663 (733)
T ss_pred eeeecCCCCeEEEecCCCeeEEEEcccC----------------------------cchhHHhhhhhhhhhhhhhccccc
Confidence 9999999999999999999999998431 112333445667799999998777
Q ss_pred EEEEecC-CcEE
Q 003423 433 LYIATNH-GYLY 443 (821)
Q Consensus 433 ~l~~~~~-g~~~ 443 (821)
+++++++ |.++
T Consensus 664 Lfas~sdDgtv~ 675 (733)
T KOG0650|consen 664 LFASGSDDGTVI 675 (733)
T ss_pred eeeeecCCCcEE
Confidence 7777655 5544
No 158
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.5e-17 Score=172.73 Aligned_cols=244 Identities=14% Similarity=0.147 Sum_probs=185.7
Q ss_pred ccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeec
Q 003423 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV 143 (821)
Q Consensus 64 ~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~ 143 (821)
+...-+.|++.+++ ..++++..++.|++|+-.... +.-..+.-+...|.+++.
T Consensus 12 ht~G~t~i~~d~~g----------efi~tcgsdg~ir~~~~~sd~--------------e~P~ti~~~g~~v~~ia~--- 64 (933)
T KOG1274|consen 12 HTGGLTLICYDPDG----------EFICTCGSDGDIRKWKTNSDE--------------EEPETIDISGELVSSIAC--- 64 (933)
T ss_pred ccCceEEEEEcCCC----------CEEEEecCCCceEEeecCCcc--------------cCCchhhccCceeEEEee---
Confidence 33357778888664 367777789999999976431 111222237778888876
Q ss_pred CCCCCEEEEEECCCcEEEEEccCCc---eeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCC
Q 003423 144 CNGNRSLAIGCSDNSIRVWDISNSS---IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN 220 (821)
Q Consensus 144 ~~~~~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 220 (821)
..+.|++|+.+++|.+|.+.+++ .+.++..+.++..++ .+|.++|.|+.|-.|++-+..
T Consensus 65 --~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~-------g~g~~iaagsdD~~vK~~~~~--------- 126 (933)
T KOG1274|consen 65 --YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVS-------GSGKMIAAGSDDTAVKLLNLD--------- 126 (933)
T ss_pred --cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEe-------cCCcEEEeecCceeEEEEecc---------
Confidence 44589999999999999998764 466777777766654 689999999999999999998
Q ss_pred CCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeee
Q 003423 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300 (821)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 300 (821)
.......+++|+++|.+|.|+|++++||+.+-||.|++||++++...... .-+.
T Consensus 127 ------------------------D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl--~~v~ 180 (933)
T KOG1274|consen 127 ------------------------DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTL--TGVD 180 (933)
T ss_pred ------------------------ccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhc--ccCC
Confidence 55667788999999999999999999999999999999999987651110 0000
Q ss_pred ceEEecc-ceeEEEEEEcC--CEEEEEeCCCeEEEEcC-CCceeeEeecccC-CCeEEEEEecCCCEEEEEeCCCcEEEE
Q 003423 301 SSVLYGH-NARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIG-RGIWRCLYDSLSSLLVTAGFDSAIKVH 375 (821)
Q Consensus 301 ~~~~~~h-~~~i~~v~~~~--~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~-~~i~~l~~~~~~~~l~tg~~dg~I~iw 375 (821)
+ ....- ...+..++|+| ..++..+.|+.|++++. .+.....++.... ..+..++|+|+|++||+++.||.|.+|
T Consensus 181 k-~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vW 259 (933)
T KOG1274|consen 181 K-DNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVW 259 (933)
T ss_pred c-cccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEE
Confidence 0 11111 34456789994 68888999999999999 5566666554222 138899999999999999999999999
Q ss_pred EcCC
Q 003423 376 QFQA 379 (821)
Q Consensus 376 d~~~ 379 (821)
|.++
T Consensus 260 nv~t 263 (933)
T KOG1274|consen 260 NVDT 263 (933)
T ss_pred eccc
Confidence 9975
No 159
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=1.2e-16 Score=162.66 Aligned_cols=271 Identities=18% Similarity=0.229 Sum_probs=202.5
Q ss_pred eeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE-cCC
Q 003423 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEK 97 (821)
Q Consensus 19 ~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g~~ 97 (821)
.|..++|- || +.-|+.+.|..+.|||.+.|.++.+++.|+. .|.+++++.++ .+++.+ .|+
T Consensus 14 ci~d~afk--PD----GsqL~lAAg~rlliyD~ndG~llqtLKgHKD-tVycVAys~dG-----------krFASG~aDK 75 (1081)
T KOG1538|consen 14 CINDIAFK--PD----GTQLILAAGSRLLVYDTSDGTLLQPLKGHKD-TVYCVAYAKDG-----------KRFASGSADK 75 (1081)
T ss_pred chheeEEC--CC----CceEEEecCCEEEEEeCCCcccccccccccc-eEEEEEEccCC-----------ceeccCCCce
Confidence 78999999 99 4555556677899999999999999999887 69999999654 255554 489
Q ss_pred eEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCc
Q 003423 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (821)
Q Consensus 98 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~ 177 (821)
.|.+|+-..+. +... .|.+.|.|+.|+| -...|++|+- +..-+|........+ .+...
T Consensus 76 ~VI~W~~klEG----------------~LkY-SH~D~IQCMsFNP---~~h~LasCsL-sdFglWS~~qK~V~K-~kss~ 133 (1081)
T KOG1538|consen 76 SVIIWTSKLEG----------------ILKY-SHNDAIQCMSFNP---ITHQLASCSL-SDFGLWSPEQKSVSK-HKSSS 133 (1081)
T ss_pred eEEEecccccc----------------eeee-ccCCeeeEeecCc---hHHHhhhcch-hhccccChhhhhHHh-hhhhe
Confidence 99999976442 1122 5999999999999 8888999875 467789876544321 12222
Q ss_pred ceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCC
Q 003423 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (821)
Q Consensus 178 ~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 257 (821)
+ +.++++ ..||.+++-|-.+|+|.+-+-..+ ....+.+..|...
T Consensus 134 R--~~~CsW---tnDGqylalG~~nGTIsiRNk~gE-------------------------------ek~~I~Rpgg~Ns 177 (1081)
T KOG1538|consen 134 R--IICCSW---TNDGQYLALGMFNGTISIRNKNGE-------------------------------EKVKIERPGGSNS 177 (1081)
T ss_pred e--EEEeee---cCCCcEEEEeccCceEEeecCCCC-------------------------------cceEEeCCCCCCC
Confidence 2 223333 468999999999999999865411 2233444457889
Q ss_pred cEEEEEEcCCC-----CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeE
Q 003423 258 SIFRIEWSSCG-----SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (821)
Q Consensus 258 ~I~~l~~s~~~-----~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i 330 (821)
+|++++|+|.. ..++......++.++.+..... . .-..-.-...|+.+- +.+++.||.|+.+
T Consensus 178 piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I-----g------k~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 178 PIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI-----G------KDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred CceEEEecCCCCCCccceEEEEeccceeEEEEecceee-----c------ccccCCCCchhheeccCCcEEEEccCCCce
Confidence 99999999953 4678888888888888775332 0 000111122345443 7899999999999
Q ss_pred EEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 331 RVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 331 ~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
+++.-+|-.+.++..... .||.++..|+++.++.|+.||+|-.|++
T Consensus 247 ~~fTR~GvrLGTvg~~D~-WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 247 SLFTRDGVRLGTVGEQDS-WIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEEeecCeEEeeccccce-eEEEEEEccCCceEEEEEccCeeehhhh
Confidence 999999988888877665 6999999999999999999999999998
No 160
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=4.9e-16 Score=154.66 Aligned_cols=273 Identities=8% Similarity=0.098 Sum_probs=184.1
Q ss_pred eeeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 15 QYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 15 ~~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
.|..-|.|+.++ .. ...+.++.|..+.+|.--+......+..++..--..+...+.. ...++..+.+++++
T Consensus 12 r~~e~vc~v~w~--~~----eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs---~~~g~~~d~~~i~s 82 (737)
T KOG1524|consen 12 RNSEKVCCVDWS--SN----EEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRS---SGGGKGSDTLLICS 82 (737)
T ss_pred ccceeEEeeccc--cc----ceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccc---cCCCCCcceEEEEc
Confidence 355667788887 44 6677778877666666544333333332222111111111110 01112235788888
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
.||.+.+.+-. .+....+..|.+.|.+..|+| +|.-|+|++.||.|++|.- +|....++.
T Consensus 83 ~DGkf~il~k~----------------~rVE~sv~AH~~A~~~gRW~~---dGtgLlt~GEDG~iKiWSr-sGMLRStl~ 142 (737)
T KOG1524|consen 83 NDGRFVILNKS----------------ARVERSISAHAAAISSGRWSP---DGAGLLTAGEDGVIKIWSR-SGMLRSTVV 142 (737)
T ss_pred CCceEEEeccc----------------chhhhhhhhhhhhhhhcccCC---CCceeeeecCCceEEEEec-cchHHHHHh
Confidence 89999998754 356677889999999999999 9999999999999999984 333221221
Q ss_pred cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (821)
. ....++++++.+.+ ...+.+.+ +.+.|=.+. ....+-..++
T Consensus 143 Q-~~~~v~c~~W~p~S--~~vl~c~g--~h~~IKpL~---------------------------------~n~k~i~WkA 184 (737)
T KOG1524|consen 143 Q-NEESIRCARWAPNS--NSIVFCQG--GHISIKPLA---------------------------------ANSKIIRWRA 184 (737)
T ss_pred h-cCceeEEEEECCCC--CceEEecC--CeEEEeecc---------------------------------cccceeEEec
Confidence 1 12236666663322 33444433 556665555 3344556789
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEc
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWG 334 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd 334 (821)
|.+-|.++.|++..+.++||+.|-..++||...... ..-..|.-+|++++|.+..++..+.-+++|
T Consensus 185 HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~L-----------f~S~~~ey~ITSva~npd~~~~v~S~nt~R--- 250 (737)
T KOG1524|consen 185 HDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANL-----------FTSAAEEYAITSVAFNPEKDYLLWSYNTAR--- 250 (737)
T ss_pred cCcEEEEeecCccccceeecCCceeEEeecccCccc-----------ccCChhccceeeeeeccccceeeeeeeeee---
Confidence 999999999999999999999999999999876544 567789999999999976555555445555
Q ss_pred CCCceeeEeec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 335 SDGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 335 ~~~~~~~~~~~-h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
+.. ..+ .|..++|++||..++.|...|.+.+-..
T Consensus 251 --------~~~p~~G-SifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 251 --------FSSPRVG-SIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred --------ecCCCcc-ceEEEEEcCCCceeeccccCceEEEeee
Confidence 222 234 6999999999999999999998766443
No 161
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.78 E-value=5.5e-17 Score=158.75 Aligned_cols=264 Identities=18% Similarity=0.210 Sum_probs=189.4
Q ss_pred EECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc--CCeEEEEEEeecCCCCCCCCCccccccceee
Q 003423 49 YDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQ 126 (821)
Q Consensus 49 wd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g--~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (821)
+|+.+-.....++++.+ +|.+++|+|.. ...+++.| .|+|-+||+..+... ..-+.
T Consensus 171 l~l~~~~~~~v~kv~~~-Rit~l~fHPt~----------~~~lva~GdK~G~VG~Wn~~~~~~d-----------~d~v~ 228 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDR-RITSLAFHPTE----------NRKLVAVGDKGGQVGLWNFGTQEKD-----------KDGVY 228 (498)
T ss_pred cccccceecceeEeccc-ceEEEEecccC----------cceEEEEccCCCcEEEEecCCCCCc-----------cCceE
Confidence 45555555666676666 89999999873 23444444 499999999632211 23466
Q ss_pred eccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce--eEEEccCcceeEEEEeeccCCccCeEEEEEeeCCE
Q 003423 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (821)
Q Consensus 127 ~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~ 204 (821)
.+..|..+|.++.|+|. +...+++.+.||+|++-|+++... +..+. ......+++.| +.+...++.|+.-|.
T Consensus 229 ~f~~hs~~Vs~l~F~P~--n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~-~d~~~fs~~d~---~~e~~~vl~~~~~G~ 302 (498)
T KOG4328|consen 229 LFTPHSGPVSGLKFSPA--NTSQIYSSSYDGTIRLQDFEGNISEEVLSLD-TDNIWFSSLDF---SAESRSVLFGDNVGN 302 (498)
T ss_pred EeccCCccccceEecCC--ChhheeeeccCceeeeeeecchhhHHHhhcC-ccceeeeeccc---cCCCccEEEeecccc
Confidence 77889999999999993 556788889999999999987643 22322 23344555555 445566777777789
Q ss_pred EEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCC-CEEEEEeCCCeEEEE
Q 003423 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIW 283 (821)
Q Consensus 205 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~~l~s~s~Dg~i~iw 283 (821)
..+||.+. .+.....+.-|+..|.+|+++|-. .+|||||.|++++||
T Consensus 303 f~~iD~R~--------------------------------~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIW 350 (498)
T KOG4328|consen 303 FNVIDLRT--------------------------------DGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIW 350 (498)
T ss_pred eEEEEeec--------------------------------CCccchhhhhhhcccceeecCCCCchheeecccCcceeee
Confidence 99999982 233344556788899999999965 578999999999999
Q ss_pred ecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCC----C-ceeeEeecccC---CC--e
Q 003423 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD----G-KQLKMIKEHIG---RG--I 351 (821)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~----~-~~~~~~~~h~~---~~--i 351 (821)
|++.-..+.+ ++ .....|...|.++.|+ +..|+|.+.|..|+|||.. . ....++ .|.. +. .
T Consensus 351 D~R~l~~K~s----p~--lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT~ 423 (498)
T KOG4328|consen 351 DLRQLRGKAS----PF--LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLTP 423 (498)
T ss_pred ehhhhcCCCC----cc--eecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-eccCcccccccc
Confidence 9998544111 11 4677899999999999 3569999999999999972 1 122222 2221 22 2
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 352 WRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 352 ~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
...+|.|+.+++++|-.-..|-++|-++
T Consensus 424 fKA~W~P~~~li~vg~~~r~IDv~~~~~ 451 (498)
T KOG4328|consen 424 FKAAWDPDYNLIVVGRYPRPIDVFDGNG 451 (498)
T ss_pred hhheeCCCccEEEEeccCcceeEEcCCC
Confidence 3467999999999999988899998755
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.78 E-value=3.9e-17 Score=159.74 Aligned_cols=295 Identities=16% Similarity=0.185 Sum_probs=203.5
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCee-eeEEE--eeccccEEeEEeccccCCCCCCccceeeEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTL-IRPFQ--VFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~-~~~~~--~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l 91 (821)
+.++|++++|+ |. -...++|+|. .|.|-+||+.+.+. ...+. ..+..+|.+|.|+|.. . ...+
T Consensus 185 ~~~Rit~l~fH--Pt--~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n-----~----s~i~ 251 (498)
T KOG4328|consen 185 TDRRITSLAFH--PT--ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPAN-----T----SQIY 251 (498)
T ss_pred cccceEEEEec--cc--CcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCC-----h----hhee
Confidence 66889999999 87 2236888888 79999999953221 11121 2345689999999762 2 3578
Q ss_pred EEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce-e
Q 003423 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-I 170 (821)
Q Consensus 92 ~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~-~ 170 (821)
..+-||++++-|++..- .+.+..+..-..++.++.|+. +...++.+..=|...+||.+++.. .
T Consensus 252 ssSyDGtiR~~D~~~~i-------------~e~v~s~~~d~~~fs~~d~~~---e~~~vl~~~~~G~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNI-------------SEEVLSLDTDNIWFSSLDFSA---ESRSVLFGDNVGNFNVIDLRTDGSEY 315 (498)
T ss_pred eeccCceeeeeeecchh-------------hHHHhhcCccceeeeeccccC---CCccEEEeecccceEEEEeecCCccc
Confidence 88889999999998553 344555554556888899987 666677777777899999997765 3
Q ss_pred EEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEE
Q 003423 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (821)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (821)
..+..|.. -+.++++.+. ...++|+++.|++.+|||++.-. .+..++.
T Consensus 316 ~~~~lh~k-KI~sv~~NP~--~p~~laT~s~D~T~kIWD~R~l~-----------------------------~K~sp~l 363 (498)
T KOG4328|consen 316 ENLRLHKK-KITSVALNPV--CPWFLATASLDQTAKIWDLRQLR-----------------------------GKASPFL 363 (498)
T ss_pred hhhhhhhc-ccceeecCCC--CchheeecccCcceeeeehhhhc-----------------------------CCCCcce
Confidence 34444444 4667777543 45789999999999999998110 0111234
Q ss_pred EEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEecccee------EEEEEEc--CCEEE
Q 003423 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR------VWDCCLT--DSFII 322 (821)
Q Consensus 251 ~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~------i~~v~~~--~~~l~ 322 (821)
....|..+|.+..|||.+..|+|.+.|..|||||..--.. ..+. .....|... .....|. .++++
T Consensus 364 st~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa----~~~p---~~~I~Hn~~t~RwlT~fKA~W~P~~~li~ 436 (498)
T KOG4328|consen 364 STLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA----KDEP---LGTIPHNNRTGRWLTPFKAAWDPDYNLIV 436 (498)
T ss_pred ecccccceeeeeEEcCCCCceEeeccCCceEEeecccccc----cCCc---cceeeccCcccccccchhheeCCCccEEE
Confidence 4457999999999999888899999999999999851100 0111 122222221 2334566 37888
Q ss_pred EEeCCCeEEEEcCCC-ceeeEeecccCCCeEEE-EEecCCCEEEE-EeCCCcEEEEEcC
Q 003423 323 TAGEDCTCRVWGSDG-KQLKMIKEHIGRGIWRC-LYDSLSSLLVT-AGFDSAIKVHQFQ 378 (821)
Q Consensus 323 s~~~dg~i~iwd~~~-~~~~~~~~h~~~~i~~l-~~~~~~~~l~t-g~~dg~I~iwd~~ 378 (821)
.|-.-..|-++|.++ +.+..+.......|.++ .|+|-+..+++ ++..|.|.+|.-+
T Consensus 437 vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 437 VGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred EeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 898888999999955 44667666555456654 78998874555 5567888888543
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.77 E-value=2.4e-17 Score=162.29 Aligned_cols=280 Identities=10% Similarity=0.087 Sum_probs=202.0
Q ss_pred CCCCcceeeccce-------eee--eeEEEEEeccCCCCCCcceEEeec--CCeEEEEECCCCee--eeEEEeeccccEE
Q 003423 3 KKDLSEWRLDVGQ-------YLG--EISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTL--IRPFQVFHGIRLH 69 (821)
Q Consensus 3 ~~~i~~w~~~~~~-------~~~--~Vt~l~~~~~p~~~~~~~~l~~g~--~~~i~iwd~~t~~~--~~~~~~~~~~~i~ 69 (821)
..++++||....+ |.. .|..++|. .. ..++++.. |..+++|.- .|+. +..+....+..-.
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~--~~----n~lvvas~~gdk~~~~~~K-~g~~~~Vp~~~k~~gd~~~ 83 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQ--RR----NFLVVASMAGDKVMRIKEK-DGKTPEVPRVRKLTGDNAF 83 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeecc--cc----ceEEEeecCCceeEEEecc-cCCCCccceeeccccchHH
Confidence 4578999988765 222 27778887 33 23444433 578888874 3331 1222222232233
Q ss_pred eEEeccccCCCCCCccceeeEEEEEc-CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCC
Q 003423 70 GISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR 148 (821)
Q Consensus 70 ~i~~~~~~~~~~~~~~~~~~~l~~~g-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~ 148 (821)
|+..... ..+++.+| .+.|+|||+..+ ...+.+++|.+.|+++.++- ...
T Consensus 84 Cv~~~s~-----------S~y~~sgG~~~~Vkiwdl~~k---------------l~hr~lkdh~stvt~v~YN~---~De 134 (673)
T KOG4378|consen 84 CVACASQ-----------SLYEISGGQSGCVKIWDLRAK---------------LIHRFLKDHQSTVTYVDYNN---TDE 134 (673)
T ss_pred HHhhhhc-----------ceeeeccCcCceeeehhhHHH---------------HHhhhccCCcceeEEEEecC---Ccc
Confidence 3332211 23444444 699999999843 45677899999999999998 889
Q ss_pred EEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccC
Q 003423 149 SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (821)
Q Consensus 149 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 228 (821)
+||+++..|.|.|..+.++....++..+.+..+.-+.|... ...+|.+++.+|.|.+||+..
T Consensus 135 yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~s--kr~lL~~asd~G~VtlwDv~g---------------- 196 (673)
T KOG4378|consen 135 YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPS--KRFLLSIASDKGAVTLWDVQG---------------- 196 (673)
T ss_pred eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccc--cceeeEeeccCCeEEEEeccC----------------
Confidence 99999999999999999988877777665555545555332 356788899999999999981
Q ss_pred CCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEecc
Q 003423 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH 307 (821)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h 307 (821)
......-...|..+..+|+|+|.. .+|++.+.|+.|.+||++.... . .....
T Consensus 197 ----------------~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s-----~------~~l~y 249 (673)
T KOG4378|consen 197 ----------------MSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS-----T------DRLTY 249 (673)
T ss_pred ----------------CCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc-----c------ceeee
Confidence 222333346899999999999955 5789999999999999997665 2 33344
Q ss_pred ceeEEEEEEc--CCEEEEEeCCCeEEEEcC--CCceeeEeecccCCCeEEEEEecCCCEEEE
Q 003423 308 NARVWDCCLT--DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (821)
Q Consensus 308 ~~~i~~v~~~--~~~l~s~~~dg~i~iwd~--~~~~~~~~~~h~~~~i~~l~~~~~~~~l~t 365 (821)
..+...++|. +.+|+.|...|.|..||+ ...++..+..|.. .|++++|-+.. .+++
T Consensus 250 ~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~-sVt~vafq~s~-tvlt 309 (673)
T KOG4378|consen 250 SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA-SVTRVAFQPSP-TVLT 309 (673)
T ss_pred cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc-ceeEEEeeecc-eeee
Confidence 5678899998 679999999999999999 4578889999998 69999998754 4444
No 164
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.1e-16 Score=147.19 Aligned_cols=293 Identities=12% Similarity=0.125 Sum_probs=196.5
Q ss_pred EEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCC
Q 003423 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (821)
Q Consensus 135 I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~ 214 (821)
-.|+.|++ .|.+||+|+.||.|.|||+.+...-+.+.+|... +.|+++ |+++..|++++.|..|.+||+.
T Consensus 26 a~~~~Fs~---~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~p-i~sl~W---S~dgr~LltsS~D~si~lwDl~--- 95 (405)
T KOG1273|consen 26 AECCQFSR---WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRP-ITSLCW---SRDGRKLLTSSRDWSIKLWDLL--- 95 (405)
T ss_pred cceEEecc---CcceeeeeccCCcEEEEEccccchhhhhhccccc-eeEEEe---cCCCCEeeeecCCceeEEEecc---
Confidence 78999999 9999999999999999999998876666666654 456655 6899999999999999999998
Q ss_pred cccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEecccCcccCC
Q 003423 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDS 293 (821)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~ 293 (821)
.+.+++.++ ...+|+...|+|..+ ..+.+-.+..-.+-++.++..
T Consensus 96 ------------------------------~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--- 141 (405)
T KOG1273|consen 96 ------------------------------KGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--- 141 (405)
T ss_pred ------------------------------CCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce---
Confidence 556677665 678999999999543 334344444455555554322
Q ss_pred CCceeeeceEEecccee-EEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCC
Q 003423 294 DSIEEVGSSVLYGHNAR-VWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (821)
Q Consensus 294 ~~~~~~~~~~~~~h~~~-i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~d 369 (821)
..+ +..-.+.... -.+..|. ++++++|...|.+.+++. +-+++..++-.....|..+.++..|+.++.-+.|
T Consensus 142 ---~~L-p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD 217 (405)
T KOG1273|consen 142 ---SVL-PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD 217 (405)
T ss_pred ---eec-cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC
Confidence 000 0000010000 1112344 799999999999999999 6678888776663469999999999999999999
Q ss_pred CcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecC
Q 003423 370 SAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD 449 (821)
Q Consensus 370 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~ 449 (821)
..||.|+++.-....-.+. +......+.+ .+.-+=++++|+.+|.++++++ .+-..+.+|.
T Consensus 218 RvIR~ye~~di~~~~r~~e-----------------~e~~~K~qDv-VNk~~Wk~ccfs~dgeYv~a~s-~~aHaLYIWE 278 (405)
T KOG1273|consen 218 RVIRTYEISDIDDEGRDGE-----------------VEPEHKLQDV-VNKLQWKKCCFSGDGEYVCAGS-ARAHALYIWE 278 (405)
T ss_pred ceEEEEehhhhcccCccCC-----------------cChhHHHHHH-HhhhhhhheeecCCccEEEecc-ccceeEEEEe
Confidence 9999999843110000000 0000000000 0112346889999998887776 4555556888
Q ss_pred CCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecC
Q 003423 450 MDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (821)
Q Consensus 450 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~ 503 (821)
...+...+++.+..+.....++..+. ...+++- ..|.+++|....
T Consensus 279 ~~~GsLVKILhG~kgE~l~DV~whp~--------rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 279 KSIGSLVKILHGTKGEELLDVNWHPV--------RPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cCCcceeeeecCCchhheeecccccc--------eeeeeec-cCCceEEEEeec
Confidence 87777777777765555544444332 1333333 789999998543
No 165
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.2e-16 Score=169.34 Aligned_cols=307 Identities=17% Similarity=0.219 Sum_probs=210.2
Q ss_pred CCcceeecccee-eeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEe--eccccEEeEEeccccCCC
Q 003423 5 DLSEWRLDVGQY-LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQV--FHGIRLHGISCNFINCTE 80 (821)
Q Consensus 5 ~i~~w~~~~~~~-~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~--~~~~~i~~i~~~~~~~~~ 80 (821)
.|..||...... ..+-..+.|+ |= .+.++++. ...|+|||.+.++.+..+.. +...+|..+.+-..
T Consensus 1051 ~i~~W~~~~~~~n~~~pk~~~~h--pf----~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe---- 1120 (1387)
T KOG1517|consen 1051 PIGNWDQKFMTGNNQPPKTLKFH--PF----EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINE---- 1120 (1387)
T ss_pred cccchHHHHHhcCCCCCceeeec--CC----CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecc----
Confidence 355666544331 2244566677 53 34555555 68999999999999877763 33456888877533
Q ss_pred CCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeee-------ccCCCCcEEEEEEeecCCCCCEEEEE
Q 003423 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS-------LPRLSHWVFDVCFLKVCNGNRSLAIG 153 (821)
Q Consensus 81 ~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~h~~~I~~~~~~~~~~~~~~l~t~ 153 (821)
.| ...++++..||.||||+-...... +.+++.. +.+..+.=.-++|.. ....|+++
T Consensus 1121 -~D---~aLlLtas~dGvIRIwk~y~~~~~----------~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ---~~G~Ll~t 1183 (1387)
T KOG1517|consen 1121 -QD---DALLLTASSDGVIRIWKDYADKWK----------KPELVTAWSSLSDQLPGARGTGLVVDWQQ---QSGHLLVT 1183 (1387)
T ss_pred -cc---hhheeeeccCceEEEecccccccC----------CceeEEeeccccccCccCCCCCeeeehhh---hCCeEEec
Confidence 12 136777788999999985432100 0112211 111122223455655 44455555
Q ss_pred ECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCC
Q 003423 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (821)
Q Consensus 154 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 233 (821)
+.-..|+|||.....+...+.....+.+.++.- ....++.+++|..||.|++||.+-.
T Consensus 1184 Gd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~--~~~~gn~i~AGfaDGsvRvyD~R~a-------------------- 1241 (1387)
T KOG1517|consen 1184 GDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA--DLVHGNIIAAGFADGSVRVYDRRMA-------------------- 1241 (1387)
T ss_pred CCeeEEEEEecccceeEeecccCCCccceeecc--cccCCceEEEeecCCceEEeecccC--------------------
Confidence 557899999999998888888776666666543 2345899999999999999999811
Q ss_pred cceeeecccccceeeEEEEecCCCc--EEEEEEcCCCC-EEEEEeCCCeEEEEecccCcccCCCCceeeeceEEecc---
Q 003423 234 FKCFKLQDQQHTAVNLFRLVGHEGS--IFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH--- 307 (821)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~h~~~--I~~l~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h--- 307 (821)
.....+...+.|... |..+.+.+.|- .|++|+.||.|++||++.... ... .....|
T Consensus 1242 ----------~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-----e~~---~~iv~~~~y 1303 (1387)
T KOG1517|consen 1242 ----------PPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-----ETF---LTIVAHWEY 1303 (1387)
T ss_pred ----------CccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-----ccc---ceeeecccc
Confidence 123456667789887 99999999774 599999999999999998522 111 122222
Q ss_pred ceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCceeeEeecccC------CCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 308 NARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 308 ~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~------~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
.+..+++..+ ...+++|+. +.|+||++.|+.+..++.+.+ ..+.+++|+|-.-++|+|..|..|.+|....
T Consensus 1304 Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred CccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 2347788877 478888887 999999998887776654322 2578999999999999999999999998754
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=5.9e-17 Score=162.86 Aligned_cols=264 Identities=15% Similarity=0.201 Sum_probs=178.6
Q ss_pred eeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEE
Q 003423 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (821)
Q Consensus 247 ~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~ 324 (821)
..-.++..|...|..++|.|-...|++|+.|+++++|+++.........++++ .++.+|.++|.|+++. ...+++|
T Consensus 285 ~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi--~tfraH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 285 NIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPI--LTFRAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred ceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeee--EEEecccCceEEEEecCCceEEEee
Confidence 34457889999999999999999999999999999999955333233335555 7999999999999998 6899999
Q ss_pred eCCCeEEEEcCC-----------CceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccc
Q 003423 325 GEDCTCRVWGSD-----------GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKE 393 (821)
Q Consensus 325 ~~dg~i~iwd~~-----------~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~ 393 (821)
|.||+|+.|++. ......+.||.+ .+|.+++++....|++++.||+++.|+.......++...
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~----- 436 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEP----- 436 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCccccCCc-----
Confidence 999999999651 134567889999 699999999999999999999999999855322222111
Q ss_pred cCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEecc
Q 003423 394 FNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLL 473 (821)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~ 473 (821)
...+...++.|...... ...++.....+.+.+.....
T Consensus 437 -----------------------~e~g~Plsvd~~ss~~a-~~~~s~~~~~~~~~~~ev~s------------------- 473 (577)
T KOG0642|consen 437 -----------------------KEHGYPLSVDRTSSRPA-HSLASFRFGYTSIDDMEVVS------------------- 473 (577)
T ss_pred -----------------------cccCCcceEeeccchhH-hhhhhcccccccchhhhhhh-------------------
Confidence 01122344444432211 11111111111121111110
Q ss_pred CCCCCCCCCCCcEEEEec-CCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeee
Q 003423 474 SNEPKYPCGIDDWVALGD-GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQL 552 (821)
Q Consensus 474 ~~~~~~s~~~~~~l~~g~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 552 (821)
.+++..+ ..+..+.++ .+..+.++ |++.+.+++..|+.|+++|.
T Consensus 474 -----------~~~~~~s~~~~~~~~~~---------~in~vVs~---------------~~~~~~~~~hed~~Ir~~dn 518 (577)
T KOG0642|consen 474 -----------DLLIFESSASPGPRRYP---------QINKVVSH---------------PTADITFTAHEDRSIRFFDN 518 (577)
T ss_pred -----------heeeccccCCCcccccC---------ccceEEec---------------CCCCeeEecccCCceecccc
Confidence 1111111 111111111 11122222 44578899999999999998
Q ss_pred cCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCc
Q 003423 553 CDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~ 611 (821)
..+ .++... ..|...++++++-|+|-+|++|+.||.+++|.+..
T Consensus 519 ~~~--------------~~l~s~-~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 519 KTG--------------KILHSM-VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred ccc--------------ccchhe-eeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 887 444443 67899999999999999999999999999999863
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=6.9e-16 Score=144.37 Aligned_cols=296 Identities=16% Similarity=0.229 Sum_probs=199.3
Q ss_pred cEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCcccc--ccceeeeccCCCCcEEEEEEeec-
Q 003423 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCV--NLSLVQSLPRLSHWVFDVCFLKV- 143 (821)
Q Consensus 67 ~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~I~~~~~~~~- 143 (821)
-.+++.|+|++ .-+|+...|+.+++|++......+.. +... ......++. ..+.|++-+|-+-
T Consensus 51 f~kgckWSPDG----------SciL~~sedn~l~~~nlP~dlys~~~---~~~~~~~~~~~~r~~-eg~tvydy~wYs~M 116 (406)
T KOG2919|consen 51 FLKGCKWSPDG----------SCILSLSEDNCLNCWNLPFDLYSKKA---DGPLNFSKHLSYRYQ-EGETVYDYCWYSRM 116 (406)
T ss_pred hhccceeCCCC----------ceEEeecccCeeeEEecChhhcccCC---CCccccccceeEEec-cCCEEEEEEeeecc
Confidence 45677788665 35778888999999999855322211 1111 122222222 2356888888641
Q ss_pred ---CCCCCEEEEEECCCcEEEEEccCCceeEEEccCc----ceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcc
Q 003423 144 ---CNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE----RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (821)
Q Consensus 144 ---~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~ 216 (821)
.|+..++|+.+.|.-|++||.-+|+....+..-. -....|+.| ++|+..|++| ....|+++|.. .
T Consensus 117 ~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~F---s~DGeqlfaG-ykrcirvFdt~----R 188 (406)
T KOG2919|consen 117 KSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQF---SPDGEQLFAG-YKRCIRVFDTS----R 188 (406)
T ss_pred ccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEe---cCCCCeEeec-ccceEEEeecc----C
Confidence 1366789999999999999999998776654321 112456666 7999999988 45899999985 0
Q ss_pred cCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEecccCcccCCCC
Q 003423 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDS 295 (821)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 295 (821)
|..+.... ....+--.+..+.|.+++|+|.. ..++.++.-+++-|+.-..+..
T Consensus 189 pGr~c~vy---------------------~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p----- 242 (406)
T KOG2919|consen 189 PGRDCPVY---------------------TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP----- 242 (406)
T ss_pred CCCCCcch---------------------hhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc-----
Confidence 11110000 00011123557889999999954 5899999999999998777654
Q ss_pred ceeeeceEEeccceeEEEEEEc--CCEEEEEe-CCCeEEEEcC--CCceeeEeecccCCCeEEEE--EecCCCEEEEEeC
Q 003423 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAG-EDCTCRVWGS--DGKQLKMIKEHIGRGIWRCL--YDSLSSLLVTAGF 368 (821)
Q Consensus 296 ~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~-~dg~i~iwd~--~~~~~~~~~~h~~~~i~~l~--~~~~~~~l~tg~~ 368 (821)
. ..+.+|.+.|+.++|. ++.|++|. .|-.|..||+ .+.++..+..|.+..=..|. ..|++++|++|+.
T Consensus 243 l-----~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t 317 (406)
T KOG2919|consen 243 L-----QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDT 317 (406)
T ss_pred e-----eeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCC
Confidence 3 5888999999999998 67888877 5778999999 56777777777652223444 4688999999999
Q ss_pred CCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEE
Q 003423 369 DSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLY 443 (821)
Q Consensus 369 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~ 443 (821)
||.|++||++..- ........+++.+..++++|-=.++++++..+++
T Consensus 318 dG~V~vwdlk~~g----------------------------n~~sv~~~~sd~vNgvslnP~mpilatssGqr~f 364 (406)
T KOG2919|consen 318 DGSVRVWDLKDLG----------------------------NEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIF 364 (406)
T ss_pred CccEEEEecCCCC----------------------------CcccccccccccccceecCcccceeeeccCceee
Confidence 9999999995410 0011122345568888888875555555544443
No 168
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=4.9e-16 Score=149.19 Aligned_cols=259 Identities=18% Similarity=0.286 Sum_probs=183.2
Q ss_pred CeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE---cCCeEEEEEEeec-CCCCCCCCCccccccceeeecc
Q 003423 54 GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF---GEKRVKLFELNFE-LSPNSQYQPETCVNLSLVQSLP 129 (821)
Q Consensus 54 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~---g~~~v~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 129 (821)
|+....-+..+..+|....|....|..++. ++.+.+ |+|-..+.-+..- ..+ ...-.+.
T Consensus 16 gq~~K~e~CYddIrVs~~tWDS~fcavNPk-----fiAvi~easgGgaf~ViPl~k~Gr~d------------~~~P~v~ 78 (472)
T KOG0303|consen 16 GQPVKNDQCYDDIRVSRVTWDSSFCAVNPK-----FVAVIIEASGGGAFLVIPLVKTGRMD------------ASYPLVC 78 (472)
T ss_pred ccccchhhhhcceeeeeeeccccccccCCc-----eEEEEEecCCCcceeecccccccccC------------CCCCCcc
Confidence 344444445566788888998888777764 333332 4556666655421 100 1234567
Q ss_pred CCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce-------eEEEccCcceeEEEEeeccCCccCeEEEEEeeC
Q 003423 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-------ILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (821)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (821)
||..+|++++|.|. +.+.+|+|+.|.+|.||++..+.. +..+.+|.+. +-.+.+++. ..+.|++++.|
T Consensus 79 GHt~~vLDi~w~Pf--nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rr-Vg~V~wHPt--A~NVLlsag~D 153 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPF--NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRR-VGLVQWHPT--APNVLLSAGSD 153 (472)
T ss_pred CccccccccccCcc--CCceeecCCCCceEEEEECCCcccccCcccceEEEeeccee-EEEEeeccc--chhhHhhccCC
Confidence 99999999999993 778999999999999999976543 4456666654 344555543 46789999999
Q ss_pred CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 003423 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (821)
Q Consensus 203 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~i 282 (821)
+.|.+|++. ++..+.++. |.+.|.++.|+.||.+|+|.+.|+.|||
T Consensus 154 n~v~iWnv~---------------------------------tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv 199 (472)
T KOG0303|consen 154 NTVSIWNVG---------------------------------TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRV 199 (472)
T ss_pred ceEEEEecc---------------------------------CCceeeecC-CCCeEEEEEeccCCceeeeecccceeEE
Confidence 999999999 666677776 9999999999999999999999999999
Q ss_pred EecccCcccCCCCceeeeceEEecccee-EEEEEEc-CCEEEEEe----CCCeEEEEcCC----CceeeEeecccCCCeE
Q 003423 283 WEVRAEYWKDSDSIEEVGSSVLYGHNAR-VWDCCLT-DSFIITAG----EDCTCRVWGSD----GKQLKMIKEHIGRGIW 352 (821)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~h~~~-i~~v~~~-~~~l~s~~----~dg~i~iwd~~----~~~~~~~~~h~~~~i~ 352 (821)
||.++++. + ....+|.+. -..+.|. +..++|.| .+..+-+||.+ .-....+.... +|.
T Consensus 200 ~dpr~~~~-----v-----~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl 267 (472)
T KOG0303|consen 200 IDPRRGTV-----V-----SEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--GVL 267 (472)
T ss_pred EcCCCCcE-----e-----eecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCC--ceE
Confidence 99999876 3 233455442 2233443 33366555 56789999983 22233444333 476
Q ss_pred EEEEecCCCEEEEEe-CCCcEEEEEcCCc
Q 003423 353 RCLYDSLSSLLVTAG-FDSAIKVHQFQAF 380 (821)
Q Consensus 353 ~l~~~~~~~~l~tg~-~dg~I~iwd~~~~ 380 (821)
---|+++.++++.+| .|+.|+-|.++..
T Consensus 268 ~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 268 LPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred EeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 667889888876655 7999999999653
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=4.1e-16 Score=143.55 Aligned_cols=270 Identities=20% Similarity=0.308 Sum_probs=190.4
Q ss_pred CCeEEEEECCC--CeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE-c---C----CeEEEEEEeecCCCCC
Q 003423 43 GSQVLLYDLEA--GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-G---E----KRVKLFELNFELSPNS 112 (821)
Q Consensus 43 ~~~i~iwd~~t--~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g---~----~~v~i~~~~~~~~~~~ 112 (821)
++.|.+.+++. +++......++.+.|..++-+|.. .+++++. . + -.+.||++..+...
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d----------~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~-- 106 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFD----------QRILATVYNDTSDSGVLTGAAIWQIPEPLGQ-- 106 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCC----------CceEEEEEeccCCCcceeeEEEEecccccCc--
Confidence 46777776654 455555444566678888877652 2344432 2 2 35789998754311
Q ss_pred CCCCccccccceeeecc-CCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce-eEEEccCc----ceeEEEEee
Q 003423 113 QYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-ILEVHSPE----RCLLYSMKL 186 (821)
Q Consensus 113 ~~~~~~~~~~~~~~~~~-~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~----~~~~~s~~~ 186 (821)
.....++.+..+. .+-+.|.|+.|.| ++..||+-. |+.|.+|++..+.. ...+..+. +.-..+.++
T Consensus 107 ----S~~~tlE~v~~Ldteavg~i~cvew~P---ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~W 178 (370)
T KOG1007|consen 107 ----SNSSTLECVASLDTEAVGKINCVEWEP---NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAW 178 (370)
T ss_pred ----cccchhhHhhcCCHHHhCceeeEEEcC---CCCeeEEec-cCceEEEEcccCcchheeecccccccccceeccccc
Confidence 1122356666665 5567899999999 888888654 89999999998765 44444322 222333333
Q ss_pred ccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEE-EecCCCcEEEEEEc
Q 003423 187 WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR-LVGHEGSIFRIEWS 265 (821)
Q Consensus 187 ~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~I~~l~~s 265 (821)
. ...+++.+++. .|+++..||++ +...... -.+|...|..+.|+
T Consensus 179 s-pHHdgnqv~tt-~d~tl~~~D~R---------------------------------T~~~~~sI~dAHgq~vrdlDfN 223 (370)
T KOG1007|consen 179 S-PHHDGNQVATT-SDSTLQFWDLR---------------------------------TMKKNNSIEDAHGQRVRDLDFN 223 (370)
T ss_pred C-CCCccceEEEe-CCCcEEEEEcc---------------------------------chhhhcchhhhhcceeeeccCC
Confidence 2 22467777665 67999999998 2222222 24788899999999
Q ss_pred CCCC-EEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcCC---C-
Q 003423 266 SCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSD---G- 337 (821)
Q Consensus 266 ~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~~---~- 337 (821)
|+.+ +|+||++||.|||||.+..+. ++ ..+.+|...||++.|+ +.+++|+|.|..|.+|... .
T Consensus 224 pnkq~~lvt~gDdgyvriWD~R~tk~-------pv--~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE 294 (370)
T KOG1007|consen 224 PNKQHILVTCGDDGYVRIWDTRKTKF-------PV--QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE 294 (370)
T ss_pred CCceEEEEEcCCCccEEEEeccCCCc-------cc--cccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence 9875 689999999999999987643 11 5889999999999998 5899999999999999751 0
Q ss_pred --------------------------ceeeEeecccCCCeEEEEEecCCC-EEEEEeCCCcEEEEEc
Q 003423 338 --------------------------KQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQF 377 (821)
Q Consensus 338 --------------------------~~~~~~~~h~~~~i~~l~~~~~~~-~l~tg~~dg~I~iwd~ 377 (821)
..+.++..|.. .|.+++|+.-.. .+|+-+.||.+.|=.+
T Consensus 295 ~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 295 QQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred cccccccccccCcchhhHHhccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 13456777888 699999987665 5688899999988665
No 170
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=3.4e-16 Score=144.11 Aligned_cols=260 Identities=10% Similarity=0.121 Sum_probs=186.9
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeecC--------CeEEEEECCC---------CeeeeEEEeeccccEEeEEeccccC
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGSG--------SQVLLYDLEA---------GTLIRPFQVFHGIRLHGISCNFINC 78 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~~--------~~i~iwd~~t---------~~~~~~~~~~~~~~i~~i~~~~~~~ 78 (821)
+.+.|..|+-+ |- ..++|++... ..+.||.+.. -+.+..+....-.+|.++.|.|+.
T Consensus 62 ~agEvw~las~--P~---d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns- 135 (370)
T KOG1007|consen 62 HAGEVWDLASS--PF---DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS- 135 (370)
T ss_pred CCcceehhhcC--CC---CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC-
Confidence 67889999988 86 4666666442 3578998752 334455543333489999999752
Q ss_pred CCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCc
Q 003423 79 TEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNS 158 (821)
Q Consensus 79 ~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~ 158 (821)
..+++-.++.|.+|++...... .. .+ ....-.+|....++.+|+| ..+++.+++.+ |++
T Consensus 136 ----------~klasm~dn~i~l~~l~ess~~-va-------ev-~ss~s~e~~~~ftsg~Wsp-HHdgnqv~tt~-d~t 194 (370)
T KOG1007|consen 136 ----------DKLASMDDNNIVLWSLDESSKI-VA-------EV-LSSESAEMRHSFTSGAWSP-HHDGNQVATTS-DST 194 (370)
T ss_pred ----------CeeEEeccCceEEEEcccCcch-he-------ee-cccccccccceecccccCC-CCccceEEEeC-CCc
Confidence 3677777999999999854310 00 00 0111123667788999998 33677888665 899
Q ss_pred EEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceee
Q 003423 159 IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (821)
Q Consensus 159 i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (821)
+..||+++.+....+...+...+..+.|.+ ....+|++++.||.|++||.+
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~vrdlDfNp--nkq~~lvt~gDdgyvriWD~R--------------------------- 245 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQRVRDLDFNP--NKQHILVTCGDDGYVRIWDTR--------------------------- 245 (370)
T ss_pred EEEEEccchhhhcchhhhhcceeeeccCCC--CceEEEEEcCCCccEEEEecc---------------------------
Confidence 999999999888888877777788888732 235678999999999999998
Q ss_pred ecccccceeeEEEEecCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEecccCccc-----------CCC--C---ceee--
Q 003423 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWK-----------DSD--S---IEEV-- 299 (821)
Q Consensus 239 ~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~-----------~~~--~---~~~~-- 299 (821)
....+++++.+|...|.++.|+|.. ++++|++.|..|.+|....-... .+. . .+++
T Consensus 246 -----~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~d 320 (370)
T KOG1007|consen 246 -----KTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQD 320 (370)
T ss_pred -----CCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccc
Confidence 2567889999999999999999964 67899999999999987543211 000 0 0111
Q ss_pred -eceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcCC
Q 003423 300 -GSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSD 336 (821)
Q Consensus 300 -~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~~ 336 (821)
...++..|...|++++|+ |=.+++-+.||.+.|=.+.
T Consensus 321 g~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 321 GQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 014677899999999998 4577889999999886653
No 171
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.73 E-value=2e-13 Score=149.93 Aligned_cols=371 Identities=20% Similarity=0.333 Sum_probs=248.9
Q ss_pred eccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc-eeEEEccCcceeEEEEeeccCCccCe-EEEE-EeeCC
Q 003423 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHSPERCLLYSMKLWGDNLEAL-RIAS-GTIYN 203 (821)
Q Consensus 127 ~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~s-g~~dg 203 (821)
.+..|.+.+..+.+.+ .+..++.++.|+.+.+|+...+. .+..+.......+..+... .+++. .++. +..|+
T Consensus 60 ~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~ 134 (466)
T COG2319 60 LLRGHEDSITSIAFSP---DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS--SPDGNSILLASSSLDG 134 (466)
T ss_pred eeeeccceEEEEEECC---CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE--CCCcceEEeccCCCCc
Confidence 4567889999999999 99999999999999999998886 5555555332222233322 23444 4444 44599
Q ss_pred EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccc-eeeEEEEecCCCcEEEEEEcCCCCEEEEEeC-CCeEE
Q 003423 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT-AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSAR 281 (821)
Q Consensus 204 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~-Dg~i~ 281 (821)
.+.+|+.. . ......+.+|...|..++|+|+++.+++++. |+.++
T Consensus 135 ~~~~~~~~---------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 181 (466)
T COG2319 135 TVKLWDLS---------------------------------TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181 (466)
T ss_pred cEEEEEec---------------------------------CCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceE
Confidence 99999998 3 5667778899999999999999999998886 99999
Q ss_pred EEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--C-EEEEEeCCCeEEEEcC-CCceee-EeecccCCCeEEEEE
Q 003423 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--S-FIITAGEDCTCRVWGS-DGKQLK-MIKEHIGRGIWRCLY 356 (821)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~-~l~s~~~dg~i~iwd~-~~~~~~-~~~~h~~~~i~~l~~ 356 (821)
+|++..... . ..+.+|...|.+++|.+ . .+++++.|+.+++||. .+..+. .+..|... . ...|
T Consensus 182 ~~~~~~~~~-----~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~-~~~~ 249 (466)
T COG2319 182 LWDLRTGKP-----L-----STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS-V-VSSF 249 (466)
T ss_pred EEEcCCCce-----E-----EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc-e-eEeE
Confidence 999997443 2 46677999999999983 3 5555599999999988 466666 57788773 3 3379
Q ss_pred ecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEE
Q 003423 357 DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA 436 (821)
Q Consensus 357 ~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~ 436 (821)
++++..+++++.|+.+++|+...... .. .....|...+.++.|.|++..+++
T Consensus 250 ~~~~~~~~~~~~d~~~~~~~~~~~~~----------------~~------------~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 250 SPDGSLLASGSSDGTIRLWDLRSSSS----------------LL------------RTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred CCCCCEEEEecCCCcEEEeeecCCCc----------------EE------------EEEecCCccEEEEEECCCCCEEEE
Confidence 99998999999999999999954211 00 000233567899999996655554
Q ss_pred -ecCCcEEEEEecCCCcceeeEeee-ccCCcceEEEeccCCCCCCCCCCCcEEEEe-cCCccEEEEEecCCCCCCcceeE
Q 003423 437 -TNHGYLYHTKLCDMDSVNWNKILQ-VSEGMPIICMDLLSNEPKYPCGIDDWVALG-DGKGNMTIVRVVGDVHTPQLSFT 513 (821)
Q Consensus 437 -~~~g~~~~~~i~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g-~~~g~i~i~~~~~~~~~~~~~~~ 513 (821)
+.++. +.+|+........... ..+...+..+.+ . . +...++.+ ..++.+.+|++..... .
T Consensus 302 ~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~------~~~~~~~~~~~d~~~~~~~~~~~~~------~ 364 (466)
T COG2319 302 GSSDGT---VRLWDLETGKLLSSLTLKGHEGPVSSLSF-S-P------DGSLLVSGGSDDGTIRLWDLRTGKP------L 364 (466)
T ss_pred eeCCCc---EEEEEcCCCceEEEeeecccCCceEEEEE-C-C------CCCEEEEeecCCCcEEeeecCCCce------e
Confidence 33333 3455443332111111 122223445544 3 1 22344444 6778899998776441 1
Q ss_pred EeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCC
Q 003423 514 FTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDE 593 (821)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~ 593 (821)
........ ...+ .+.++......+..++.+.+|+.... ...... ..+...+....+++++.
T Consensus 365 ~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~ 425 (466)
T COG2319 365 KTLEGHSN--VLSV--SFSPDGRVVSSGSTDGTVRLWDLSTG--------------SLLRNL-DGHTSRVTSLDFSPDGK 425 (466)
T ss_pred EEecCCce--EEEE--EECCCCCEEEEecCCCceEEEecccC--------------eeeeec-cCCCCcEEEEEECCCCc
Confidence 11111110 1222 22232222334788999999998876 222222 11116789999999999
Q ss_pred EEEEEcCCCcEEEEecCc
Q 003423 594 VLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 594 ~L~sgs~dG~i~iw~~~~ 611 (821)
.++.++.++.+++|+...
T Consensus 426 ~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 426 SLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEEecCCCcEEEEeccC
Confidence 999999999999999773
No 172
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=4.5e-17 Score=177.31 Aligned_cols=289 Identities=17% Similarity=0.306 Sum_probs=204.8
Q ss_pred EEEEEeccCCCCCCcceEEeec-----------CCeEEEEECC--CC----eeeeEEEeeccccEEeEEeccccCCCCCC
Q 003423 21 SALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLE--AG----TLIRPFQVFHGIRLHGISCNFINCTEGSV 83 (821)
Q Consensus 21 t~l~~~~~p~~~~~~~~l~~g~-----------~~~i~iwd~~--t~----~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 83 (821)
.-++++ |+ +..++++|. +.++.||.+. +. +++..++. ..+-+.+.|.+.+ ++
T Consensus 10 a~~awS--p~---~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s--~~rF~kL~W~~~g----~~ 78 (1049)
T KOG0307|consen 10 ATFAWS--PA---SPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS--SNRFNKLAWGSYG----SH 78 (1049)
T ss_pred ceEEec--CC---CchhhHHHhhhhccccccccccccceeeecccCccccccccccccc--cccceeeeecccC----CC
Confidence 346778 77 233565533 3456666554 33 24444443 4467888888553 22
Q ss_pred ccceeeEEEEE-cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEE
Q 003423 84 STRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVW 162 (821)
Q Consensus 84 ~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iw 162 (821)
. ..+++.+ .||.|.+|+...-.. +.....+.+...|++.|+.+.|++. .+++||+|+.||.|.||
T Consensus 79 ~---~GlIaGG~edG~I~ly~p~~~~~---------~~~~~~la~~~~h~G~V~gLDfN~~--q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 79 S---HGLIAGGLEDGNIVLYDPASIIA---------NASEEVLATKSKHTGPVLGLDFNPF--QGNLLASGADDGEILIW 144 (1049)
T ss_pred c---cceeeccccCCceEEecchhhcc---------CcchHHHhhhcccCCceeeeecccc--CCceeeccCCCCcEEEe
Confidence 1 1355554 379999999774210 1124678889999999999999992 55699999999999999
Q ss_pred EccCCceeEEEccC-cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecc
Q 003423 163 DISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (821)
Q Consensus 163 d~~~~~~~~~~~~~-~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (821)
|+.+.+.-...... ....+.++++ +-.....||+++.+|.+.|||++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsW--NrkvqhILAS~s~sg~~~iWDlr------------------------------ 192 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSW--NRKVSHILASGSPSGRAVIWDLR------------------------------ 192 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEecc--chhhhHHhhccCCCCCceecccc------------------------------
Confidence 99875443332111 1112333322 22346689999999999999999
Q ss_pred cccceeeEEEEecCCC--cEEEEEEcCCC-CEEEEEeCC---CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEE
Q 003423 242 QQHTAVNLFRLVGHEG--SIFRIEWSSCG-SKLVSVSDD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC 315 (821)
Q Consensus 242 ~~~~~~~~~~~~~h~~--~I~~l~~s~~~-~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~ 315 (821)
..+++..+..|.+ .+..|+|+|+. ..|+++++| -.|.+||++.-.. .. ..+.+|...|.++.
T Consensus 193 ---~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-----P~----k~~~~H~~Gilsls 260 (1049)
T KOG0307|consen 193 ---KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-----PL----KILEGHQRGILSLS 260 (1049)
T ss_pred ---CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC-----ch----hhhcccccceeeec
Confidence 3344555554443 47789999987 466666665 3799999887533 11 47789999999999
Q ss_pred Ec---CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCC-EEEEEeCCCcEEEEEcCC
Q 003423 316 LT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 316 ~~---~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~-~l~tg~~dg~I~iwd~~~ 379 (821)
|. +.+++|++.|+.+.+|+. +|+.+..+..... .+..+.|+|... .++.++.||.|.|+.+.+
T Consensus 261 Wc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 261 WCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 98 489999999999999999 7888988887555 588999999775 889999999999999955
No 173
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=6.6e-16 Score=150.83 Aligned_cols=200 Identities=20% Similarity=0.267 Sum_probs=151.4
Q ss_pred cEEEEEEee----cCCCCCEEEEEECCCcEEEEEccCCce---eEEEc-----------------cCcceeEEEEeeccC
Q 003423 134 WVFDVCFLK----VCNGNRSLAIGCSDNSIRVWDISNSSI---ILEVH-----------------SPERCLLYSMKLWGD 189 (821)
Q Consensus 134 ~I~~~~~~~----~~~~~~~l~t~~~d~~i~iwd~~~~~~---~~~~~-----------------~~~~~~~~s~~~~~~ 189 (821)
.-+|++|.. ....|+++|.|+-|..|.|||+.=... ...+. .+++..+.++.+ +
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~--n 252 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW--N 252 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHh--c
Confidence 345666643 122468999999999999999863211 11111 011111112222 1
Q ss_pred CccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCC-C
Q 003423 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-G 268 (821)
Q Consensus 190 s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-~ 268 (821)
-.-.+.||+|+.|.+|++||+. ++++..++..|.+.|.++.|+|. .
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~---------------------------------~g~p~~s~~~~~k~Vq~l~wh~~~p 299 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVD---------------------------------TGKPKSSITHHGKKVQTLEWHPYEP 299 (463)
T ss_pred cccceeEEecCCCceEEEEEcC---------------------------------CCCcceehhhcCCceeEEEecCCCc
Confidence 2246789999999999999999 77888888899999999999995 5
Q ss_pred CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcC--CCceeeEe
Q 003423 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS--DGKQLKMI 343 (821)
Q Consensus 269 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~--~~~~~~~~ 343 (821)
..|++|+.|++|++.|.+.... . .....-.+.|-.++|. +..++++..||+++-+|+ .++++.++
T Consensus 300 ~~LLsGs~D~~V~l~D~R~~~~-----s-----~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~ 369 (463)
T KOG0270|consen 300 SVLLSGSYDGTVALKDCRDPSN-----S-----GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL 369 (463)
T ss_pred eEEEeccccceEEeeeccCccc-----c-----CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE
Confidence 7899999999999999996332 1 2334445677788887 578899999999999999 57999999
Q ss_pred ecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEEcCC
Q 003423 344 KEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 344 ~~h~~~~i~~l~~~~~~-~~l~tg~~dg~I~iwd~~~ 379 (821)
+.|.+ +|.++++++.- .+++|++.|+.+++|++..
T Consensus 370 ~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 370 KAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred EeccC-CcceEEecCCCCcceeeccccceEEEEeecC
Confidence 99999 79999998754 6789999999999999955
No 174
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.2e-16 Score=148.98 Aligned_cols=231 Identities=15% Similarity=0.208 Sum_probs=162.1
Q ss_pred eEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc
Q 003423 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 89 ~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
.+++....+.|++||..++ ..+..+++++..+..++|...+ ....+.+|+.||+|++||++...
T Consensus 42 ~vav~lSngsv~lyd~~tg---------------~~l~~fk~~~~~~N~vrf~~~d-s~h~v~s~ssDG~Vr~wD~Rs~~ 105 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTG---------------QLLEEFKGPPATTNGVRFISCD-SPHGVISCSSDGTVRLWDIRSQA 105 (376)
T ss_pred eEEEEecCCeEEEEeccch---------------hhhheecCCCCcccceEEecCC-CCCeeEEeccCCeEEEEEeecch
Confidence 3555567899999998864 4667788999999999998622 45678999999999999999766
Q ss_pred eeEEEc--cCcceeEEEEeeccCCccCeEEEEEee----CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccc
Q 003423 169 IILEVH--SPERCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (821)
Q Consensus 169 ~~~~~~--~~~~~~~~s~~~~~~s~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (821)
....+. .+......+++. +-.+.++++|+. +-.+.+||++.
T Consensus 106 e~a~~~~~~~~~~~f~~ld~---nck~~ii~~GtE~~~s~A~v~lwDvR~------------------------------ 152 (376)
T KOG1188|consen 106 ESARISWTQQSGTPFICLDL---NCKKNIIACGTELTRSDASVVLWDVRS------------------------------ 152 (376)
T ss_pred hhhheeccCCCCCcceEeec---cCcCCeEEeccccccCceEEEEEEecc------------------------------
Confidence 544433 222222333322 236778888864 67899999981
Q ss_pred cccee-eEEEEecCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-C-
Q 003423 243 QHTAV-NLFRLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-D- 318 (821)
Q Consensus 243 ~~~~~-~~~~~~~h~~~I~~l~~s~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~- 318 (821)
..+ .-.-...|.+.|++|+|+|. .++|+|||.||-|.++|+..... -..+ .....|.+.|..+.|. +
T Consensus 153 --~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E-----eDaL--~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 153 --EQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE-----EDAL--LHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred --ccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc-----hhhH--HHhhcccceeeeeeeecCC
Confidence 222 22234579999999999995 57999999999999999987532 1111 3555677778888887 3
Q ss_pred -CEEEEEeCCCeEEEEcC-CCc----------------------------------------------------------
Q 003423 319 -SFIITAGEDCTCRVWGS-DGK---------------------------------------------------------- 338 (821)
Q Consensus 319 -~~l~s~~~dg~i~iwd~-~~~---------------------------------------------------------- 338 (821)
+.|.+-+...+..+|++ ++.
T Consensus 224 ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~ 303 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS 303 (376)
T ss_pred cceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccccc
Confidence 36777788888888877 321
Q ss_pred ---eeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 339 ---QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 339 ---~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
.+..+.++...-|+++.|...+..++|||+||.+.+|..
T Consensus 304 ~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 304 LLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 111222222223566667767789999999999999985
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.71 E-value=1.7e-15 Score=141.85 Aligned_cols=278 Identities=16% Similarity=0.194 Sum_probs=193.2
Q ss_pred EEEEEeccCCCCCCcceEEeecCCeEEEEECCC-------C-----eeeeEEEeeccccEEeEEeccccCCCCCCcccee
Q 003423 21 SALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA-------G-----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVT 88 (821)
Q Consensus 21 t~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t-------~-----~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~ 88 (821)
..+.|+ || +.-+|+...|..+.+|++-. . +...+++..++..|...+|.+.--...|+ .
T Consensus 53 kgckWS--PD---GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~----t 123 (406)
T KOG2919|consen 53 KGCKWS--PD---GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS----T 123 (406)
T ss_pred ccceeC--CC---CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc----c
Confidence 466788 99 45566667799999999842 1 22344555566678888876431111233 2
Q ss_pred eEEEE-EcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCC---cEEEEEEeecCCCCCEEEEEECCCcEEEEEc
Q 003423 89 FEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH---WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (821)
Q Consensus 89 ~~l~~-~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~ 164 (821)
.++++ ..++-|++||.-+++ ++.-...-.|.+ .-.+++|+| ||.+|.+|. .+.|+++|+
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~-------------lraSy~~ydh~de~taAhsL~Fs~---DGeqlfaGy-krcirvFdt 186 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGK-------------LRASYRAYDHQDEYTAAHSLQFSP---DGEQLFAGY-KRCIRVFDT 186 (406)
T ss_pred ceeeeccccCceeeeeccccc-------------cccchhhhhhHHhhhhheeEEecC---CCCeEeecc-cceEEEeec
Confidence 34444 458999999988765 222222223333 346799999 999999665 789999999
Q ss_pred c-CCcee--E-EE---ccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCccee
Q 003423 165 S-NSSII--L-EV---HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (821)
Q Consensus 165 ~-~~~~~--~-~~---~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (821)
. .|..- . ++ +.....++-..+|.+ .+...+|.|+.-..+-|+.-.
T Consensus 187 ~RpGr~c~vy~t~~~~k~gq~giisc~a~sP--~~~~~~a~gsY~q~~giy~~~-------------------------- 238 (406)
T KOG2919|consen 187 SRPGRDCPVYTTVTKGKFGQKGIISCFAFSP--MDSKTLAVGSYGQRVGIYNDD-------------------------- 238 (406)
T ss_pred cCCCCCCcchhhhhcccccccceeeeeeccC--CCCcceeeecccceeeeEecC--------------------------
Confidence 4 44321 1 11 122234555556643 345689999998888888776
Q ss_pred eecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEecccCcccCCCCceeeeceEEeccce-eEEEEE
Q 003423 238 KLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA-RVWDCC 315 (821)
Q Consensus 238 ~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~v~ 315 (821)
...+++.+.||.+.|+.+.|.++|+.|.+|+. |-.|-.||++..+. .+ ..+..|.. .=..|.
T Consensus 239 -------~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~-------pv--~~L~rhv~~TNQRI~ 302 (406)
T KOG2919|consen 239 -------GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD-------PV--YALERHVGDTNQRIL 302 (406)
T ss_pred -------CCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc-------hh--hhhhhhccCccceEE
Confidence 66788888999999999999999999999875 67899999997543 11 34555544 222344
Q ss_pred Ec----CCEEEEEeCCCeEEEEcC-C-CceeeEeecccCCCeEEEEEecCCCEEEEEeCC
Q 003423 316 LT----DSFIITAGEDCTCRVWGS-D-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (821)
Q Consensus 316 ~~----~~~l~s~~~dg~i~iwd~-~-~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~d 369 (821)
|. ++.|++|+.||.|++||+ + |..+..+..+.. .+..++++|--.+++|++..
T Consensus 303 FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd-~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 303 FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred EecCCCCceeeccCCCccEEEEecCCCCCcccccccccc-cccceecCcccceeeeccCc
Confidence 54 689999999999999999 3 677777777877 69999999998888887653
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.71 E-value=7.8e-16 Score=141.90 Aligned_cols=246 Identities=17% Similarity=0.252 Sum_probs=169.7
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCC--Cee--eeEEEe----eccccEEeEEeccccCCCCCCccce
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA--GTL--IRPFQV----FHGIRLHGISCNFINCTEGSVSTRV 87 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t--~~~--~~~~~~----~~~~~i~~i~~~~~~~~~~~~~~~~ 87 (821)
|..|+|.+.|. |+..+...-|+|.++..+++|.+.. ++. ...+.. ....+++++.|... .+
T Consensus 95 ~~YP~tK~~wi--Pd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~----dp----- 163 (364)
T KOG0290|consen 95 HPYPVTKLMWI--PDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV----DP----- 163 (364)
T ss_pred CCCCccceEec--CCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccC----Cc-----
Confidence 78899999999 9844444567788888999999873 221 111211 12346777776632 12
Q ss_pred eeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCC-CEEEEEECCCcEEEEEccC
Q 003423 88 TFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISN 166 (821)
Q Consensus 88 ~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~-~~l~t~~~d~~i~iwd~~~ 166 (821)
.++.+.+-|-+..|||++.+. .+.....|-.|+..|++++|.. .+ +.+|+.+.||.||++|++.
T Consensus 164 ~~igtSSiDTTCTiWdie~~~------------~~~vkTQLIAHDKEV~DIaf~~---~s~~~FASvgaDGSvRmFDLR~ 228 (364)
T KOG0290|consen 164 NLIGTSSIDTTCTIWDIETGV------------SGTVKTQLIAHDKEVYDIAFLK---GSRDVFASVGADGSVRMFDLRS 228 (364)
T ss_pred ceeEeecccCeEEEEEEeecc------------ccceeeEEEecCcceeEEEecc---CccceEEEecCCCcEEEEEecc
Confidence 134444559999999999752 1345677889999999999997 44 6789999999999999986
Q ss_pred Ccee-EEEccCc-ceeEEEEeeccCCccCeEEEEEee-CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccc
Q 003423 167 SSII-LEVHSPE-RCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (821)
Q Consensus 167 ~~~~-~~~~~~~-~~~~~s~~~~~~s~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (821)
.+-. --...+. ...+ +++.++..|-+++|+-.. ..+|.|-|++
T Consensus 229 leHSTIIYE~p~~~~pL--lRLswnkqDpnymATf~~dS~~V~iLDiR-------------------------------- 274 (364)
T KOG0290|consen 229 LEHSTIIYEDPSPSTPL--LRLSWNKQDPNYMATFAMDSNKVVILDIR-------------------------------- 274 (364)
T ss_pred cccceEEecCCCCCCcc--eeeccCcCCchHHhhhhcCCceEEEEEec--------------------------------
Confidence 5421 1122222 1222 233334456778887544 4689999998
Q ss_pred cceeeEEEEecCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CC
Q 003423 244 HTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DS 319 (821)
Q Consensus 244 ~~~~~~~~~~~h~~~I~~l~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~ 319 (821)
....++.++++|.+.|++|+|.|.. ..|+||++|..+-+||+...... ....+...+.-.+.|..+.|+ ++
T Consensus 275 ~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~-----~~~dPilay~a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 275 VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE-----NGEDPILAYTAGGEVNQIQWSSSQPD 349 (364)
T ss_pred CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc-----CCCCchhhhhccceeeeeeecccCCC
Confidence 2557788999999999999999965 68999999999999999875320 000112333456789999998 57
Q ss_pred EEEEEeC
Q 003423 320 FIITAGE 326 (821)
Q Consensus 320 ~l~s~~~ 326 (821)
.++.+..
T Consensus 350 wiai~~~ 356 (364)
T KOG0290|consen 350 WIAICFG 356 (364)
T ss_pred EEEEEec
Confidence 7776653
No 177
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=9.1e-16 Score=144.94 Aligned_cols=286 Identities=15% Similarity=0.186 Sum_probs=177.2
Q ss_pred CeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcC--CCCE
Q 003423 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS--CGSK 270 (821)
Q Consensus 193 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~--~~~~ 270 (821)
...+|++-..|.|++||.. +++.+..+++|.+.++.++|.. ....
T Consensus 40 e~~vav~lSngsv~lyd~~---------------------------------tg~~l~~fk~~~~~~N~vrf~~~ds~h~ 86 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKG---------------------------------TGQLLEEFKGPPATTNGVRFISCDSPHG 86 (376)
T ss_pred ceeEEEEecCCeEEEEecc---------------------------------chhhhheecCCCCcccceEEecCCCCCe
Confidence 3679999999999999998 6778889999999999999987 3568
Q ss_pred EEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccc-eeEEEEEEc--CCEEEEEe----CCCeEEEEcC-C-Cceee
Q 003423 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN-ARVWDCCLT--DSFIITAG----EDCTCRVWGS-D-GKQLK 341 (821)
Q Consensus 271 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~v~~~--~~~l~s~~----~dg~i~iwd~-~-~~~~~ 341 (821)
+.+|+.||+||+||++.... ... ....+++ .+..+++.. .+.+++|. .|..+.+||. . .+.+.
T Consensus 87 v~s~ssDG~Vr~wD~Rs~~e-----~a~---~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~ 158 (376)
T KOG1188|consen 87 VISCSSDGTVRLWDIRSQAE-----SAR---ISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLR 158 (376)
T ss_pred eEEeccCCeEEEEEeecchh-----hhh---eeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhh
Confidence 99999999999999998654 211 2444454 455566664 34555543 4678999999 2 33355
Q ss_pred Ee-ecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCC
Q 003423 342 MI-KEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKS 419 (821)
Q Consensus 342 ~~-~~h~~~~i~~l~~~~~~-~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (821)
.+ ..|.. -|+++.|+|.. ++|++|+.||-|.++|++.. +....+...-.+.
T Consensus 159 ~~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d--------------------------~EeDaL~~viN~~ 211 (376)
T KOG1188|consen 159 QLNESHND-DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD--------------------------NEEDALLHVINHG 211 (376)
T ss_pred hhhhhccC-cceeEEecCCCCCeEEeecccceEEeeecCCC--------------------------cchhhHHHhhccc
Confidence 54 45766 59999999965 79999999999999999652 1111112222334
Q ss_pred cceEEEEeecCC--eEEEEecCCcEEEEEecCCCcceeeEeeecc--CC----cceEEEeccCCCCCCCCCCCcEEEEec
Q 003423 420 EYVRCLHLTSED--TLYIATNHGYLYHTKLCDMDSVNWNKILQVS--EG----MPIICMDLLSNEPKYPCGIDDWVALGD 491 (821)
Q Consensus 420 ~~i~~l~f~~~~--~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~--~~----~~i~~~~~~~~~~~~s~~~~~~l~~g~ 491 (821)
..|.++.|..++ +++..+..+....+.+.+.....|....... .. .--+.++.. ++.+...++++.
T Consensus 212 sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~------~~~~~~~~~l~g 285 (376)
T KOG1188|consen 212 SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH------SPGDKDTCALAG 285 (376)
T ss_pred ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc------cCCCcceEEEec
Confidence 558999999988 7777777666665555544332222211100 00 000111111 123455555544
Q ss_pred C-CccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecC
Q 003423 492 G-KGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCD 554 (821)
Q Consensus 492 ~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 554 (821)
. .|+..++.+..........-...+...+......+ ++.-.+.++.+|+.||.+.+|..+.
T Consensus 286 ~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i--~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 286 TDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI--LFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred cccCceeEEEeeecccccccCccccccCCcHHHHHHH--hhhcccceeeccCCCceEEEEecCC
Confidence 4 67777776653211110000111111111111111 1223457899999999999998643
No 178
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.71 E-value=7.5e-15 Score=135.51 Aligned_cols=259 Identities=15% Similarity=0.198 Sum_probs=178.5
Q ss_pred eeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc-----CCeEEEEEEeecCCCCCCCCCccccccceeeecc
Q 003423 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-----EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP 129 (821)
Q Consensus 55 ~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g-----~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (821)
+.+..+.. ...+.++.|+.. ++.+ .+++++. .+.|.|..++.... + ...... -
T Consensus 36 ~eiy~Y~a--p~~lya~~Ws~~-----~~~~---~rla~gS~~Ee~~Nkvqiv~ld~~s~---e--------~~~~a~-f 93 (364)
T KOG0290|consen 36 KEIYTYNA--PWPLYAMNWSVR-----PDKK---FRLAVGSFIEEYNNKVQIVQLDEDSG---E--------LVEDAN-F 93 (364)
T ss_pred ceEEEecC--CCceeeeccccC-----CCcc---eeEEEeeeccccCCeeEEEEEccCCC---c--------eeccCC-C
Confidence 33444443 345788888743 3322 5666653 47888888874321 0 111112 3
Q ss_pred CCCCcEEEEEEeecC--CCCCEEEEEECCCcEEEEEccCCceeEE----Ec----cCcceeEEEEeeccCCccCeEEEEE
Q 003423 130 RLSHWVFDVCFLKVC--NGNRSLAIGCSDNSIRVWDISNSSIILE----VH----SPERCLLYSMKLWGDNLEALRIASG 199 (821)
Q Consensus 130 ~h~~~I~~~~~~~~~--~~~~~l~t~~~d~~i~iwd~~~~~~~~~----~~----~~~~~~~~s~~~~~~s~~~~~l~sg 199 (821)
.|.-+++.+.|.|.. ...++|||++ -.+|+|.+........ +. .+....+.| |.++..+-++|.+.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTS--FDWne~dp~~igtS 169 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTS--FDWNEVDPNLIGTS 169 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccc--cccccCCcceeEee
Confidence 588899999999922 1124677764 4799999874322111 11 112223444 33445678899999
Q ss_pred eeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCC-CEEEEEeCCC
Q 003423 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDR 278 (821)
Q Consensus 200 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~~l~s~s~Dg 278 (821)
+.|-+..|||++.+ ..+.....+-+|...|+.|+|...+ +.+||+|.||
T Consensus 170 SiDTTCTiWdie~~------------------------------~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDG 219 (364)
T KOG0290|consen 170 SIDTTCTIWDIETG------------------------------VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADG 219 (364)
T ss_pred cccCeEEEEEEeec------------------------------cccceeeEEEecCcceeEEEeccCccceEEEecCCC
Confidence 99999999999811 0223455677899999999999866 4789999999
Q ss_pred eEEEEecccCcccCCCCceeeeceEEec--cceeEEEEEEc---CCEEEEEeCC-CeEEEEcC--CCceeeEeecccCCC
Q 003423 279 SARIWEVRAEYWKDSDSIEEVGSSVLYG--HNARVWDCCLT---DSFIITAGED-CTCRVWGS--DGKQLKMIKEHIGRG 350 (821)
Q Consensus 279 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~v~~~---~~~l~s~~~d-g~i~iwd~--~~~~~~~~~~h~~~~ 350 (821)
.||++|++..+. ... .... ...+...++|+ +++++|...| ..|.+-|+ ...++..+++|.+ .
T Consensus 220 SvRmFDLR~leH-----STI----IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a-~ 289 (364)
T KOG0290|consen 220 SVRMFDLRSLEH-----STI----IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA-S 289 (364)
T ss_pred cEEEEEeccccc-----ceE----EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc-c
Confidence 999999998654 111 1121 24566778887 5888888766 47889998 5778899999999 6
Q ss_pred eEEEEEecCC-CEEEEEeCCCcEEEEEcCC
Q 003423 351 IWRCLYDSLS-SLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 351 i~~l~~~~~~-~~l~tg~~dg~I~iwd~~~ 379 (821)
|..++|.|.. ..|.|+|.|....+||+..
T Consensus 290 VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 290 VNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ccceEecCCCCceeeecCCcceEEEEeccc
Confidence 9999999964 7899999999999999965
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.68 E-value=1e-12 Score=144.27 Aligned_cols=286 Identities=26% Similarity=0.411 Sum_probs=208.7
Q ss_pred ceeeeeeEEEEEeccCCCCCCcceEEee-cCCeEEEEECCCCe-eeeEEEeeccccEEeEEe-ccccCCCCCCccceeeE
Q 003423 14 GQYLGEISALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGT-LIRPFQVFHGIRLHGISC-NFINCTEGSVSTRVTFE 90 (821)
Q Consensus 14 ~~~~~~Vt~l~~~~~p~~~~~~~~l~~g-~~~~i~iwd~~t~~-~~~~~~~~~~~~i~~i~~-~~~~~~~~~~~~~~~~~ 90 (821)
..|...|.++.|. +. +..++.+ .++.+.+|+...+. .+..+.......+..+.+ .++. . ...
T Consensus 62 ~~~~~~i~~~~~~--~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~ 126 (466)
T COG2319 62 RGHEDSITSIAFS--PD----GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDG-------N--SIL 126 (466)
T ss_pred eeccceEEEEEEC--CC----CcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCc-------c--eEE
Confidence 3477889999999 76 5555555 49999999999886 566665433334666665 3321 1 123
Q ss_pred EEEEc-CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC-CCcEEEEEccCCc
Q 003423 91 VALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSS 168 (821)
Q Consensus 91 l~~~g-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~-d~~i~iwd~~~~~ 168 (821)
..... ++.+.+|++... ......+..|...|.+++|+| ++..+++++. |+.+++|++.++.
T Consensus 127 ~~~~~~d~~~~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 189 (466)
T COG2319 127 LASSSLDGTVKLWDLSTP--------------GKLIRTLEGHSESVTSLAFSP---DGKLLASGSSLDGTIKLWDLRTGK 189 (466)
T ss_pred eccCCCCccEEEEEecCC--------------CeEEEEEecCcccEEEEEECC---CCCEEEecCCCCCceEEEEcCCCc
Confidence 33334 789999999851 246778889999999999999 8888888885 9999999999877
Q ss_pred eeEEEccCcceeEEEEeeccCCccCe-EEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccccccee
Q 003423 169 IILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (821)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (821)
.+..+..+. ..+..+.+. +++. .+++++.|+.|++||.. ...
T Consensus 190 ~~~~~~~~~-~~v~~~~~~---~~~~~~~~~~~~d~~i~~wd~~---------------------------------~~~ 232 (466)
T COG2319 190 PLSTLAGHT-DPVSSLAFS---PDGGLLIASGSSDGTIRLWDLS---------------------------------TGK 232 (466)
T ss_pred eEEeeccCC-CceEEEEEc---CCcceEEEEecCCCcEEEEECC---------------------------------CCc
Confidence 777776633 345666663 5555 55666999999999766 334
Q ss_pred eEE-EEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEE
Q 003423 248 NLF-RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITA 324 (821)
Q Consensus 248 ~~~-~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~ 324 (821)
... .+.+|...+ -..|+|++.++++++.|+.+++|+...... .+ ....+|...|.++.|.+ ..++++
T Consensus 233 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------~~--~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 233 LLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-------LL--RTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred EEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-------EE--EEEecCCccEEEEEECCCCCEEEEe
Confidence 444 677888875 448999998999999999999999987542 11 23368899999999985 788889
Q ss_pred eCCCeEEEEcCC-CceeeEee--cccCCCeEEEEEecCCCEEEEE-eCCCcEEEEEcCC
Q 003423 325 GEDCTCRVWGSD-GKQLKMIK--EHIGRGIWRCLYDSLSSLLVTA-GFDSAIKVHQFQA 379 (821)
Q Consensus 325 ~~dg~i~iwd~~-~~~~~~~~--~h~~~~i~~l~~~~~~~~l~tg-~~dg~I~iwd~~~ 379 (821)
+.|+.+++|+.. ........ .|.. .+..+.+.+++..++.+ ..|+.+.+|+...
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 360 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLTLKGHEG-PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360 (466)
T ss_pred eCCCcEEEEEcCCCceEEEeeecccCC-ceEEEEECCCCCEEEEeecCCCcEEeeecCC
Confidence 999999999883 44444443 6666 58889883332556555 6888999999854
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1e-13 Score=124.72 Aligned_cols=274 Identities=17% Similarity=0.175 Sum_probs=186.6
Q ss_pred eEEEEEeccCCCCCCcceEEeec-CCeEEEEECCC---------Ce-eeeEEEeeccccEEeEEeccccCCCCCCcccee
Q 003423 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA---------GT-LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVT 88 (821)
Q Consensus 20 Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t---------~~-~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~ 88 (821)
|-+-+++ |. .++|++|. +|.|.+..+++ |+ .+-..+.+++ +|..+.|. +
T Consensus 13 vf~qa~s--p~----~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdg-piy~~~f~-------------d 72 (325)
T KOG0649|consen 13 VFAQAIS--PS----KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDG-PIYYLAFH-------------D 72 (325)
T ss_pred HHHHhhC--Cc----ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCC-Ceeeeeee-------------h
Confidence 4455677 76 67888887 79999999864 22 2333355454 89999988 3
Q ss_pred eEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCC-----CcEEEEEEeecCCCCCEEEEEECCCcEEEEE
Q 003423 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-----HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (821)
Q Consensus 89 ~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd 163 (821)
..+++.|||.|+=|.+..... .....+ -+ ....+-|. -.|+++-..| ..+-+++++.|+.+.-||
T Consensus 73 ~~Lls~gdG~V~gw~W~E~~e-s~~~K~----lw--e~~~P~~~~~~evPeINam~ldP---~enSi~~AgGD~~~y~~d 142 (325)
T KOG0649|consen 73 DFLLSGGDGLVYGWEWNEEEE-SLATKR----LW--EVKIPMQVDAVEVPEINAMWLDP---SENSILFAGGDGVIYQVD 142 (325)
T ss_pred hheeeccCceEEEeeehhhhh-hccchh----hh--hhcCccccCcccCCccceeEecc---CCCcEEEecCCeEEEEEE
Confidence 588888999999999874321 000000 01 11111222 3588898888 666677777899999999
Q ss_pred ccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccc
Q 003423 164 ISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (821)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (821)
+++|+..+++++|..- +.++... .....+.+|+.||++++||+.
T Consensus 143 lE~G~i~r~~rGHtDY-vH~vv~R---~~~~qilsG~EDGtvRvWd~k-------------------------------- 186 (325)
T KOG0649|consen 143 LEDGRIQREYRGHTDY-VHSVVGR---NANGQILSGAEDGTVRVWDTK-------------------------------- 186 (325)
T ss_pred ecCCEEEEEEcCCcce-eeeeeec---ccCcceeecCCCccEEEEecc--------------------------------
Confidence 9999999999988753 3333221 234579999999999999998
Q ss_pred cceeeEEEE---------ecCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEE
Q 003423 244 HTAVNLFRL---------VGHE-GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (821)
Q Consensus 244 ~~~~~~~~~---------~~h~-~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 313 (821)
+.+.+..+ +.|- ..|-+++-+ ..+|++|+. ..+.+|+++..+. .....-.+++..
T Consensus 187 -t~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse~-----------t~vfpipa~v~~ 251 (325)
T KOG0649|consen 187 -TQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSES-----------TCVFPIPARVHL 251 (325)
T ss_pred -ccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCCc-----------eEEEecccceeE
Confidence 22222222 2333 347777764 458887655 7899999998766 355566778889
Q ss_pred EEEcCCEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCC-CEEEEEeCCCcEEEE
Q 003423 314 CCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVH 375 (821)
Q Consensus 314 v~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~-~~l~tg~~dg~I~iw 375 (821)
+.|.++.++++|+.+.+.-|.+.|........... ...+..++..- +++-.+|....+.++
T Consensus 252 v~F~~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~-~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 252 VDFVDDCVLIGGEGNHVQSYTLNGVLQANIPVEST-ACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eeeecceEEEeccccceeeeeeccEEEEeccCCcc-ceeeecccCCceEEEEecccceeeeee
Confidence 99999999999999999999998876665554433 35555554332 455556666666554
No 181
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.66 E-value=4.7e-15 Score=142.54 Aligned_cols=211 Identities=18% Similarity=0.275 Sum_probs=145.1
Q ss_pred EecCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCC
Q 003423 252 LVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGED 327 (821)
Q Consensus 252 ~~~h~~~I~~l~~s~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~d 327 (821)
+.||+++|..++|+|- ...+||||+|.+|.||++..+..... ..+++ ..+.||..+|--++|+ .+.|+|+|.|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~-ltepv--v~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD-LTEPV--VELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC-cccce--EEEeecceeEEEEeecccchhhHhhccCC
Confidence 4699999999999994 46899999999999999988755111 12223 6899999999999999 4899999999
Q ss_pred CeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcC-CCcccCCccccccCCCcceEEeec
Q 003423 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL-PGSLESHPEAKEFNGRTEIFSIKI 405 (821)
Q Consensus 328 g~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 405 (821)
.+|.+|++ +|+.+.++. |.. .|+++.|+.+|.+++|.+.|..|++||.+... +..-..|.
T Consensus 154 n~v~iWnv~tgeali~l~-hpd-~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he---------------- 215 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPD-MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE---------------- 215 (472)
T ss_pred ceEEEEeccCCceeeecC-CCC-eEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc----------------
Confidence 99999999 788888877 888 59999999999999999999999999995521 11111111
Q ss_pred CCcccceeccCCCCcceEEEEeecCCeEEEEecCCc--EEEEEecCCCcceeeEeeeccCCcceEEEeccCCC-CCCCCC
Q 003423 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY--LYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE-PKYPCG 482 (821)
Q Consensus 406 ~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~--~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~ 482 (821)
.......-|..++.+ ++|.-.+ ...+.+|+..+.. ++ ....-++-+.+- .-|-.+
T Consensus 216 -------------G~k~~Raifl~~g~i-~tTGfsr~seRq~aLwdp~nl~-eP-------~~~~elDtSnGvl~PFyD~ 273 (472)
T KOG0303|consen 216 -------------GAKPARAIFLASGKI-FTTGFSRMSERQIALWDPNNLE-EP-------IALQELDTSNGVLLPFYDP 273 (472)
T ss_pred -------------CCCcceeEEeccCce-eeeccccccccceeccCccccc-Cc-------ceeEEeccCCceEEeeecC
Confidence 112344456667664 3332222 3445566655432 01 111112221111 111123
Q ss_pred CCc-EEEEecCCccEEEEEecCCC
Q 003423 483 IDD-WVALGDGKGNMTIVRVVGDV 505 (821)
Q Consensus 483 ~~~-~l~~g~~~g~i~i~~~~~~~ 505 (821)
+.. ..++|-.|+.|+.|.+....
T Consensus 274 dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 274 DTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred CCCEEEEEecCCcceEEEEecCCC
Confidence 334 45678889999999987654
No 182
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=3e-15 Score=150.81 Aligned_cols=227 Identities=19% Similarity=0.325 Sum_probs=167.4
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC--------ceeEEEccCcceeEEEEeeccCCccC
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--------SIILEVHSPERCLLYSMKLWGDNLEA 193 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~s~~~~~~s~~~ 193 (821)
+....++..|.+.|++++|+| ....|++|+.||++++|+++.. +.+.++.+|...++ ++.+ +.++
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~---sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl-~v~v---~~n~ 356 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHP---SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVL-CVVV---PSNG 356 (577)
T ss_pred cceeeeeecchhhhhhhhcCC---CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceE-EEEe---cCCc
Confidence 344457888999999999999 8889999999999999999321 34667777777543 3333 4789
Q ss_pred eEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEE
Q 003423 194 LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (821)
Q Consensus 194 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s 273 (821)
..+++|+.||.|+.|++. +..+ +. + ..........+.||++.|+.+++++...+|++
T Consensus 357 ~~~ysgg~Dg~I~~w~~p-----~n~d--p~---d-------------s~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls 413 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLP-----PNQD--PD---D-------------SYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS 413 (577)
T ss_pred eEEEeeccCceeeeeccC-----CCCC--cc---c-------------ccCcchhccceeccccceeeeeecccccceee
Confidence 999999999999999876 1100 00 0 00122345567899999999999999999999
Q ss_pred EeCCCeEEEEecccCcccC-----------------CC----------------CceeeeceEEec--------cceeEE
Q 003423 274 VSDDRSARIWEVRAEYWKD-----------------SD----------------SIEEVGSSVLYG--------HNARVW 312 (821)
Q Consensus 274 ~s~Dg~i~iwd~~~~~~~~-----------------~~----------------~~~~~~~~~~~~--------h~~~i~ 312 (821)
|+.||++|+|+........ +. +.+......+.. -...+.
T Consensus 414 cs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in 493 (577)
T KOG0642|consen 414 CSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN 493 (577)
T ss_pred ecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc
Confidence 9999999999987654410 00 000000000000 011234
Q ss_pred EEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 313 DCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 313 ~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
-+..+ ..+.+++.+|+.|+++|. .++.+.....|.. .++++++.|+|.+|++|+.|+.+++|.+..
T Consensus 494 ~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 494 KVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred eEEecCCCCeeEecccCCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccc
Confidence 44444 368999999999999998 8999999999988 699999999999999999999999999844
No 183
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.65 E-value=9.1e-15 Score=133.16 Aligned_cols=298 Identities=15% Similarity=0.111 Sum_probs=179.9
Q ss_pred eEEeccceeEEEEEEc-CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 302 SVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 302 ~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
..+.+|.+.|+++.|. +.+|++|.+-|.+++|++ ..+....++.+....|+.+..-|+ ..+.+-+.|+.+.+|++..
T Consensus 8 fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred eEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 5778999999999998 688999999999999999 556666777666668999998886 6688999999999999954
Q ss_pred cCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEee-----cCC----eEEEEecCCcEEEEEecCC
Q 003423 380 FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT-----SED----TLYIATNHGYLYHTKLCDM 450 (821)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~-----~~~----~~l~~~~~g~~~~~~i~~~ 450 (821)
...-.. -++. +.++.|. +++ .+++.-..|... ..+.+.
T Consensus 87 s~~i~i---------------~Si~-----------------~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~ 133 (323)
T KOG0322|consen 87 SAFISI---------------HSIV-----------------VNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDG 133 (323)
T ss_pred cceEEE---------------eeee-----------------ccccccccceeccCCCcchhheecCCcccch-hhhhcc
Confidence 110000 0000 1111111 100 111111111111 111221
Q ss_pred CcceeeEeee---ccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCc--ceeEEee-ccCcccee
Q 003423 451 DSVNWNKILQ---VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQ--LSFTFTW-SAGIERQL 524 (821)
Q Consensus 451 ~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~--~~~~~~~-~~~~~~~~ 524 (821)
....-..+.. ....+.++|.+..... ...-+++.|-.+|.+.+||++.+...-. ...++.. ........
T Consensus 134 g~~tqv~i~dd~~~~Klgsvmc~~~~~~c-----~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpv 208 (323)
T KOG0322|consen 134 GDTTQVQIADDSERSKLGSVMCQDKDHAC-----GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPV 208 (323)
T ss_pred CccceeEccCchhccccCceeeeeccccc-----cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcc
Confidence 1111111111 1124456665532221 2335778899999999999988632100 0000000 00111112
Q ss_pred eeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcE
Q 003423 525 LGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNL 604 (821)
Q Consensus 525 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i 604 (821)
+.+-.. +-...=++++.+..+..|.+...... ++...+. .-....|..+..-||++.||+++.||.|
T Consensus 209 lsldya--s~~~rGisgga~dkl~~~Sl~~s~gs----------lq~~~e~-~lknpGv~gvrIRpD~KIlATAGWD~Ri 275 (323)
T KOG0322|consen 209 LSLDYA--SSCDRGISGGADDKLVMYSLNHSTGS----------LQIRKEI-TLKNPGVSGVRIRPDGKILATAGWDHRI 275 (323)
T ss_pred eeeeec--hhhcCCcCCCccccceeeeeccccCc----------ccccceE-EecCCCccceEEccCCcEEeecccCCcE
Confidence 221111 11112245666778888988765221 1221111 1123447788888999999999999999
Q ss_pred EEEecCcccccccccccccccCcccccccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEe
Q 003423 605 VLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (821)
Q Consensus 605 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~ 669 (821)
++|+.. .+.|+.+++ -| +.+|++++|+| +...++++++|+.|-+|++
T Consensus 276 RVyswr-------------tl~pLAVLk-yH-sagvn~vAfsp---d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 276 RVYSWR-------------TLNPLAVLK-YH-SAGVNAVAFSP---DCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEEec-------------cCCchhhhh-hh-hcceeEEEeCC---CCchhhhccCCceEEeeec
Confidence 999987 677888885 67 68999999994 5688999999999999986
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.65 E-value=4e-15 Score=135.49 Aligned_cols=297 Identities=12% Similarity=0.139 Sum_probs=188.5
Q ss_pred eeeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE
Q 003423 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (821)
Q Consensus 15 ~~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (821)
.|.+.|+++.|- .+ .+|.+|. -|.|++|++++.+.+..++.+.+..|..++.-|+ +.+..-
T Consensus 12 p~~~~v~s~~fq--a~-----~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-----------d~l~tq 73 (323)
T KOG0322|consen 12 PHSSSVTSVLFQ--AN-----ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-----------DSLDTQ 73 (323)
T ss_pred cccchheehhhc--cc-----hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-----------cchhhc
Confidence 366778888887 43 4577776 6999999999999888888777778888887754 235555
Q ss_pred EcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecC--CCC----CEEEEEECCC-cEEEEEccC
Q 003423 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC--NGN----RSLAIGCSDN-SIRVWDISN 166 (821)
Q Consensus 94 ~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~--~~~----~~l~t~~~d~-~i~iwd~~~ 166 (821)
..|..+.+|++.... +..++.+ .+.++-|.+.+ +++ ..++.-+... .+.+-|...
T Consensus 74 gRd~~L~lw~ia~s~-------------~i~i~Si-----~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~ 135 (323)
T KOG0322|consen 74 GRDPLLILWTIAYSA-------------FISIHSI-----VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGD 135 (323)
T ss_pred CCCceEEEEEccCcc-------------eEEEeee-----eccccccccceeccCCCcchhheecCCcccchhhhhccCc
Confidence 568999999987532 1222222 23334443210 011 1122111100 022222221
Q ss_pred CceeEEEccC---cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccc
Q 003423 167 SSIILEVHSP---ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (821)
Q Consensus 167 ~~~~~~~~~~---~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (821)
...++....+ ....+.+...-.......++++|..+|.+.+||+..+.. ++.+ +
T Consensus 136 ~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~--------------------~~~~---~ 192 (323)
T KOG0322|consen 136 TTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK--------------------IIQL---P 192 (323)
T ss_pred cceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce--------------------eecc---c
Confidence 1112111111 111222222111112345778899999999999983210 0111 0
Q ss_pred cceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEE
Q 003423 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI 321 (821)
Q Consensus 244 ~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l 321 (821)
...+.......|+.+|.++.+.+.-..=++++.+..+..|+++.... .-.++ ....-..-.|..+... ++.+
T Consensus 193 ~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g-----slq~~-~e~~lknpGv~gvrIRpD~KIl 266 (323)
T KOG0322|consen 193 QSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG-----SLQIR-KEITLKNPGVSGVRIRPDGKIL 266 (323)
T ss_pred cccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC-----ccccc-ceEEecCCCccceEEccCCcEE
Confidence 12344455568999999999988766778889999999999886532 11111 1222222335555554 6899
Q ss_pred EEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 322 ITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 322 ~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
+|+|-|+.||+|.. +.+++..++.|.+ .|.+++|+|+...+|.++.|+.|.+|++
T Consensus 267 ATAGWD~RiRVyswrtl~pLAVLkyHsa-gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 267 ATAGWDHRIRVYSWRTLNPLAVLKYHSA-GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eecccCCcEEEEEeccCCchhhhhhhhc-ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999 7899999999998 7999999999999999999999999986
No 185
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.5e-14 Score=137.01 Aligned_cols=322 Identities=10% Similarity=0.060 Sum_probs=181.1
Q ss_pred EEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC
Q 003423 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (821)
Q Consensus 250 ~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d 327 (821)
+.+.+|.+.|++|.|+.++++|++|++|..+++|++...-.. ...++++ ..-..|.+.|.|++|. +..+++|+.+
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~--k~~KPI~-~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR--KTPKPIG-VMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh--cCCCCce-eccCccccceEEEEEccCCeeEecCCCc
Confidence 345689999999999999999999999999999998763220 0023332 1334466889999998 6899999999
Q ss_pred CeEEEEcCC-CceeeEeecc--cCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEee
Q 003423 328 CTCRVWGSD-GKQLKMIKEH--IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIK 404 (821)
Q Consensus 328 g~i~iwd~~-~~~~~~~~~h--~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (821)
++|.+-|++ .+.+..+... .+ .|..+..+|..+.+++.+.+|.|.+||.+...- + ...
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~-~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~-----~---------~~~---- 187 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRG-DVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN-----P---------ISL---- 187 (609)
T ss_pred ceeEeeecccceeeeeecccCccc-ceeecccCCCCceEEEEecCceEEEEeccCCCC-----C---------Cce----
Confidence 999999994 4444444322 23 599999999999999999999999999954210 0 000
Q ss_pred cCCcccceeccCCCCcceEEEEeecCCeEEEEec--CCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCC
Q 003423 405 IPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN--HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCG 482 (821)
Q Consensus 405 ~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~--~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~ 482 (821)
............+.|.|....|+.++ .+-.. +|+..... ..+++-......-.-...+.++.+++.
T Consensus 188 --------~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~---~~D~R~~~-~~~~~~~~~~~L~~~~~~~M~~~~~~~ 255 (609)
T KOG4227|consen 188 --------VLPANSGKNFYTAEFHPETPALILVNSETGGPN---VFDRRMQA-RPVYQRSMFKGLPQENTEWMGSLWSPS 255 (609)
T ss_pred --------eeecCCCccceeeeecCCCceeEEeccccCCCC---ceeecccc-chHHhhhccccCcccchhhhheeeCCC
Confidence 00111123466778888764444433 23333 23221110 011110000000000000001111222
Q ss_pred CCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeee-EEeecCCCeEEEEECCCCcEEEeeecCCCCcccc
Q 003423 483 IDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGT-YWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCY 561 (821)
Q Consensus 483 ~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 561 (821)
...++++-- ...-.+||+....+ .+++....+.+--.+..+ .+|+.. ...+++|+.+-.|++|.++........
T Consensus 256 G~Q~msiRR-~~~P~~~D~~S~R~---~V~k~D~N~~GY~N~~T~KS~~F~~-D~~v~tGSD~~~i~~WklP~~~ds~G~ 330 (609)
T KOG4227|consen 256 GNQFMSIRR-GKCPLYFDFISQRC---FVLKSDHNPNGYCNIKTIKSMTFID-DYTVATGSDHWGIHIWKLPRANDSYGF 330 (609)
T ss_pred CCeehhhhc-cCCCEEeeeecccc---eeEeccCCCCcceeeeeeeeeeeec-ceeeeccCcccceEEEecCCCccccCc
Confidence 223333221 11223445443222 111221111110011111 122323 345889999989999999875332221
Q ss_pred cCCcc--------ceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecC
Q 003423 562 ESSKT--------NNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (821)
Q Consensus 562 ~~~~~--------~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~ 610 (821)
..... ..++-.-....+|..-++.+.|+|...+|++.+-...++||.--
T Consensus 331 ~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 331 TQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred cccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 11000 01111111137899999999999999999999999999999643
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.1e-14 Score=137.51 Aligned_cols=209 Identities=15% Similarity=0.236 Sum_probs=157.6
Q ss_pred eeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccC------CceeEEEccCcceeEEEEeeccCCccCeEEE
Q 003423 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN------SSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (821)
Q Consensus 124 ~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (821)
..+.+.+|.+.|.++.|+. ++++||+|+.|..+++|++.. .+.+.....|+++.+++++| ......+.
T Consensus 48 ~qKD~~~H~GCiNAlqFS~---N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F---~~~N~~~~ 121 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSH---NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF---DLENRFLY 121 (609)
T ss_pred hhhhhhhhccccceeeecc---CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE---ccCCeeEe
Confidence 3456789999999999999 999999999999999999864 34555566777788999998 46678999
Q ss_pred EEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe--cCCCcEEEEEEcCCCCEEEEEe
Q 003423 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVSVS 275 (821)
Q Consensus 198 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~I~~l~~s~~~~~l~s~s 275 (821)
+|..+++|+..|+. +.+.+..+. ...+.|..+..+|..+.|++.+
T Consensus 122 SG~~~~~VI~HDiE---------------------------------t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t 168 (609)
T KOG4227|consen 122 SGERWGTVIKHDIE---------------------------------TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT 168 (609)
T ss_pred cCCCcceeEeeecc---------------------------------cceeeeeecccCcccceeecccCCCCceEEEEe
Confidence 99999999999998 444455443 2335999999999999999999
Q ss_pred CCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcCCC--ceeeEeecccCC-
Q 003423 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDG--KQLKMIKEHIGR- 349 (821)
Q Consensus 276 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~~~--~~~~~~~~h~~~- 349 (821)
+++.|.+||.+.... ....+ ......+..+.+.|+ |.+|+++++.+-+.+||... ..+....+..+-
T Consensus 169 ~~~~V~~~D~Rd~~~----~~~~~---~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~ 241 (609)
T KOG4227|consen 169 RAKLVSFIDNRDRQN----PISLV---LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLP 241 (609)
T ss_pred cCceEEEEeccCCCC----CCcee---eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCc
Confidence 999999999998652 02222 333445567888888 58999999999999999832 222222221110
Q ss_pred ----CeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 350 ----GIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 350 ----~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
.-.+..|+|+|+.+.+--.-..-.+||+-
T Consensus 242 ~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 242 QENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred ccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 12467899999888877665556667763
No 187
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=1.8e-12 Score=124.42 Aligned_cols=274 Identities=12% Similarity=0.180 Sum_probs=184.4
Q ss_pred eeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc-C-
Q 003423 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-E- 96 (821)
Q Consensus 19 ~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g-~- 96 (821)
.+....|. .| ..+|..|+..--++|..+.-....... ..+..|..+-|+.. +++..+ +
T Consensus 7 ti~~~~~N--qd----~~~lsvGs~~Gyk~~~~~~~~k~~~~~-~~~~~IvEmLFSSS-------------LvaiV~~~q 66 (391)
T KOG2110|consen 7 TINFIGFN--QD----STLLSVGSKDGYKIFSCSPFEKCFSKD-TEGVSIVEMLFSSS-------------LVAIVSIKQ 66 (391)
T ss_pred ceeeeeec--cc----eeEEEccCCCceeEEecCchHHhhccc-CCCeEEEEeecccc-------------eeEEEecCC
Confidence 35556677 65 667888885557889887654422221 24456777777732 444433 2
Q ss_pred -CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEcc
Q 003423 97 -KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (821)
Q Consensus 97 -~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~ 175 (821)
+.+++++.+.+. .+-.+ -....|.++.++ .+.|+++-.+. |.|||+.+.+.+.++..
T Consensus 67 pr~Lkv~~~Kk~~---------------~ICe~-~fpt~IL~VrmN-----r~RLvV~Lee~-IyIydI~~MklLhTI~t 124 (391)
T KOG2110|consen 67 PRKLKVVHFKKKT---------------TICEI-FFPTSILAVRMN-----RKRLVVCLEES-IYIYDIKDMKLLHTIET 124 (391)
T ss_pred CceEEEEEcccCc---------------eEEEE-ecCCceEEEEEc-----cceEEEEEccc-EEEEecccceeehhhhc
Confidence 568888877442 11111 245789999985 46778777654 99999999999887764
Q ss_pred C--cceeEEEEeeccCCccCeEEEEE--eeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEE
Q 003423 176 P--ERCLLYSMKLWGDNLEALRIASG--TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (821)
Q Consensus 176 ~--~~~~~~s~~~~~~s~~~~~l~sg--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (821)
. ....+.++.+ +.++.++|-- ...|.|++||.. ..+++..
T Consensus 125 ~~~n~~gl~AlS~---n~~n~ylAyp~s~t~GdV~l~d~~---------------------------------nl~~v~~ 168 (391)
T KOG2110|consen 125 TPPNPKGLCALSP---NNANCYLAYPGSTTSGDVVLFDTI---------------------------------NLQPVNT 168 (391)
T ss_pred cCCCccceEeecc---CCCCceEEecCCCCCceEEEEEcc---------------------------------cceeeeE
Confidence 3 2222323222 3455577643 346999999998 7788889
Q ss_pred EecCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCC
Q 003423 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRS-ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC 328 (821)
Q Consensus 252 ~~~h~~~I~~l~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg 328 (821)
+.+|++.+.+++|+++|.+|||+|+.|+ |||+.+.+++. +.+.. .--....|++++|+ ..+|.+.+..+
T Consensus 169 I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k-----l~eFR---RG~~~~~IySL~Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 169 INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK-----LYEFR---RGTYPVSIYSLSFSPDSQFLAASSNTE 240 (391)
T ss_pred EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE-----eeeee---CCceeeEEEEEEECCCCCeEEEecCCC
Confidence 9999999999999999999999999987 68999998876 43321 11235679999999 47888889999
Q ss_pred eEEEEcCCCc--------------------------------------eeeEeecccC--CCeEEEEEecCCCEEEEEeC
Q 003423 329 TCRVWGSDGK--------------------------------------QLKMIKEHIG--RGIWRCLYDSLSSLLVTAGF 368 (821)
Q Consensus 329 ~i~iwd~~~~--------------------------------------~~~~~~~h~~--~~i~~l~~~~~~~~l~tg~~ 368 (821)
+|+++.++.. ...+.+.... +.+..+.-.+....+..++.
T Consensus 241 TVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~ 320 (391)
T KOG2110|consen 241 TVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASY 320 (391)
T ss_pred eEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEc
Confidence 9999987311 0001111111 12333333356788899999
Q ss_pred CCcEEEEEcC
Q 003423 369 DSAIKVHQFQ 378 (821)
Q Consensus 369 dg~I~iwd~~ 378 (821)
||.+..|.+.
T Consensus 321 dG~~y~y~l~ 330 (391)
T KOG2110|consen 321 DGHLYSYRLP 330 (391)
T ss_pred CCeEEEEEcC
Confidence 9999999884
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.62 E-value=1.6e-13 Score=132.98 Aligned_cols=264 Identities=14% Similarity=0.210 Sum_probs=178.7
Q ss_pred EeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEE
Q 003423 61 QVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF 140 (821)
Q Consensus 61 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~ 140 (821)
.-|...+|..+.|.+.. . ..+..+++|..|++|.+........ ....+....|..|...|+++.|
T Consensus 9 ~wH~~~pv~s~dfq~n~-----~----~~laT~G~D~~iriW~v~r~~~~~~------~~~V~y~s~Ls~H~~aVN~vRf 73 (434)
T KOG1009|consen 9 SWHDHEPVYSVDFQKNS-----L----NKLATAGGDKDIRIWKVNRSEPGGG------DMKVEYLSSLSRHTRAVNVVRF 73 (434)
T ss_pred EecCCCceEEEEeccCc-----c----cceecccCccceeeeeeeecCCCCC------ceeEEEeecccCCcceeEEEEE
Confidence 33455678887777542 1 1344455689999999986642221 1356778899999999999999
Q ss_pred eecCCCCCEEEEEECCCcEEEEEcc--------C-----C---ceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCE
Q 003423 141 LKVCNGNRSLAIGCSDNSIRVWDIS--------N-----S---SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (821)
Q Consensus 141 ~~~~~~~~~l~t~~~d~~i~iwd~~--------~-----~---~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~ 204 (821)
+| +|++||+|+++|.|.+|... + . ...+.+.+|. .-+|.+++ ++++.++++|+.|+.
T Consensus 74 ~p---~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~-~diydL~W---s~d~~~l~s~s~dns 146 (434)
T KOG1009|consen 74 SP---DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHR-DDIYDLAW---SPDSNFLVSGSVDNS 146 (434)
T ss_pred cC---CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccc-cchhhhhc---cCCCceeeeeeccce
Confidence 99 99999999999999999866 2 1 1122333333 33455444 589999999999999
Q ss_pred EEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 003423 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (821)
Q Consensus 205 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd 284 (821)
+++||+. .+.....+.+|..-|..++|.|.++++++-+.|+..+...
T Consensus 147 ~~l~Dv~---------------------------------~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~ 193 (434)
T KOG1009|consen 147 VRLWDVH---------------------------------AGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFS 193 (434)
T ss_pred EEEEEec---------------------------------cceeEeeccccccccceeecchhhhhhhhhccCcccceee
Confidence 9999999 7778888889999999999999888888888888666655
Q ss_pred cccCccc--------------------------------------CCC---------------Cc--eee----------
Q 003423 285 VRAEYWK--------------------------------------DSD---------------SI--EEV---------- 299 (821)
Q Consensus 285 ~~~~~~~--------------------------------------~~~---------------~~--~~~---------- 299 (821)
+...+.. .+. .. ...
T Consensus 194 ~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r 273 (434)
T KOG1009|consen 194 AKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR 273 (434)
T ss_pred eeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccC
Confidence 5432211 000 00 000
Q ss_pred eceEEeccceeEEEEEEcC-------------------CEEEEEeCCCeEEEEcC-CCceeeEe-ecccCCCeEEEEEec
Q 003423 300 GSSVLYGHNARVWDCCLTD-------------------SFIITAGEDCTCRVWGS-DGKQLKMI-KEHIGRGIWRCLYDS 358 (821)
Q Consensus 300 ~~~~~~~h~~~i~~v~~~~-------------------~~l~s~~~dg~i~iwd~-~~~~~~~~-~~h~~~~i~~l~~~~ 358 (821)
....+.+...++..+.|.+ ..++.......+.+||. .-.++... +-|-. .|+.++|++
T Consensus 274 P~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~-~iTDiaws~ 352 (434)
T KOG1009|consen 274 PAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYS-AITDIAWSD 352 (434)
T ss_pred ceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeee-eecceeecC
Confidence 0012222223333333321 23344445567889997 33444443 33555 699999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCc
Q 003423 359 LSSLLVTAGFDSAIKVHQFQAF 380 (821)
Q Consensus 359 ~~~~l~tg~~dg~I~iwd~~~~ 380 (821)
+|..++..+.||...+..++..
T Consensus 353 dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 353 DGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred CCcEEEEeccCCceEEEEEcch
Confidence 9999999999999988877554
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.61 E-value=7.9e-13 Score=132.17 Aligned_cols=265 Identities=15% Similarity=0.161 Sum_probs=175.0
Q ss_pred CCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCC----ccCeEEEEEeeCCEE
Q 003423 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDN----LEALRIASGTIYNEI 205 (821)
Q Consensus 130 ~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s----~~~~~l~sg~~dg~i 205 (821)
.|...+.|+.|+. +...+.++++ ..+.+|.-.+......+.-+..-+..++...+.+ .....++..+.||.+
T Consensus 12 r~~e~vc~v~w~~---~eei~~~~dD-h~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS---NEEIYFVSDD-HQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccc---cceEEEeccC-ceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 5666778999987 6666666654 4555554333333333333332222222222211 234567888899999
Q ss_pred EEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 003423 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (821)
Q Consensus 206 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~ 285 (821)
.+-+-. ++......+|.+.|.+-.|+|||.-|+|++.||.|++|.-
T Consensus 88 ~il~k~----------------------------------~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr 133 (737)
T KOG1524|consen 88 VILNKS----------------------------------ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR 133 (737)
T ss_pred EEeccc----------------------------------chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec
Confidence 987644 3444556799999999999999999999999999999986
Q ss_pred ccCcccCCCCceeeeceEEeccceeEEEEEEcC---CEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCE
Q 003423 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (821)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~ 362 (821)
...-. .++.....+|+|++|.| +.+++.+.--.|+-.. ....+-..+.|.+ -|.++.|++..++
T Consensus 134 sGMLR-----------Stl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~-~n~k~i~WkAHDG-iiL~~~W~~~s~l 200 (737)
T KOG1524|consen 134 SGMLR-----------STVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLA-ANSKIIRWRAHDG-LVLSLSWSTQSNI 200 (737)
T ss_pred cchHH-----------HHHhhcCceeEEEEECCCCCceEEecCCeEEEeecc-cccceeEEeccCc-EEEEeecCccccc
Confidence 54322 35566678899999983 5666655443443333 2344567889999 6999999999999
Q ss_pred EEEEeCCCcEEEEEcCCcCCCcccCCc---cccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEE-Eec
Q 003423 363 LVTAGFDSAIKVHQFQAFLPGSLESHP---EAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATN 438 (821)
Q Consensus 363 l~tg~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~-~~~ 438 (821)
+++||+|-..++||-.+..+.+...|. .++.+.++ +.|.+-.-+. ........+.|-.++|++||..++ +++
T Consensus 201 I~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt---~R~~~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 201 IASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNT---ARFSSPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred eeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeeee---eeecCCCccceEEEEEcCCCceeecccc
Confidence 999999999999999887666554443 34556555 3332221111 112234456799999999996554 567
Q ss_pred CCcEEEEEecC
Q 003423 439 HGYLYHTKLCD 449 (821)
Q Consensus 439 ~g~~~~~~i~~ 449 (821)
.|.+....+-+
T Consensus 277 ~G~v~~A~~ie 287 (737)
T KOG1524|consen 277 TGQLIVAYAIE 287 (737)
T ss_pred CceEEEeeeeh
Confidence 78877655433
No 190
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.60 E-value=3.2e-13 Score=143.94 Aligned_cols=278 Identities=15% Similarity=0.110 Sum_probs=188.7
Q ss_pred CeEEEEECCCC-eeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCcccccc
Q 003423 44 SQVLLYDLEAG-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNL 122 (821)
Q Consensus 44 ~~i~iwd~~t~-~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~ 122 (821)
+.+.||++... .+-..+. ....|.++.|+|.. +. .++....+|+|.+||+....... ..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~--~~s~v~~~~f~p~~----p~-----ll~gG~y~GqV~lWD~~~~~~~~---------~s 281 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE--SPSEVTCLKFCPFD----PN-----LLAGGCYNGQVVLWDLRKGSDTP---------PS 281 (555)
T ss_pred ceEEEEecCCCCCceEEEe--cCCceeEEEeccCC----cc-----eEEeeccCceEEEEEccCCCCCC---------Cc
Confidence 47999999876 4444444 34469999998663 22 23333457999999998654210 11
Q ss_pred ceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeE-----EEcc------CcceeEEEEeeccCCc
Q 003423 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL-----EVHS------PERCLLYSMKLWGDNL 191 (821)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~-----~~~~------~~~~~~~s~~~~~~s~ 191 (821)
..-.....|.++++.+.|.....+ .-+++++.||.|..|+++.-.... .... .......++.|...
T Consensus 282 ~ls~~~~sh~~~v~~vvW~~~~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-- 358 (555)
T KOG1587|consen 282 GLSALEVSHSEPVTAVVWLQNEHN-TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-- 358 (555)
T ss_pred ccccccccCCcCeEEEEEeccCCC-CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccC--
Confidence 223344578999999999873323 568999999999999886533211 1111 22234566777654
Q ss_pred cCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEE
Q 003423 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (821)
Q Consensus 192 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l 271 (821)
+...++.|+..|.|.-=+..+....+. ...+....+..|.++|.++.++|-+..+
T Consensus 359 ~p~~FiVGTe~G~v~~~~r~g~~~~~~-------------------------~~~~~~~~~~~h~g~v~~v~~nPF~~k~ 413 (555)
T KOG1587|consen 359 DPNHFIVGTEEGKVYKGCRKGYTPAPE-------------------------VSYKGHSTFITHIGPVYAVSRNPFYPKN 413 (555)
T ss_pred CCceEEEEcCCcEEEEEeccCCccccc-------------------------ccccccccccccCcceEeeecCCCccce
Confidence 456789999999998744331100000 0123344566799999999999977654
Q ss_pred EEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcC---CCceeeEeec
Q 003423 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS---DGKQLKMIKE 345 (821)
Q Consensus 272 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~---~~~~~~~~~~ 345 (821)
+..+.|-+++||....... ++ ..+..+...|++++|+ +..|+++..||.+.+||+ ...++.+.+.
T Consensus 414 fls~gDW~vriWs~~~~~~-------Pl--~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~ 484 (555)
T KOG1587|consen 414 FLSVGDWTVRIWSEDVIAS-------PL--LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV 484 (555)
T ss_pred eeeeccceeEeccccCCCC-------cc--hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc
Confidence 4444489999998773211 11 4566677789999999 578999999999999999 3455555555
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 346 HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 346 h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
+.. ....+.+++.|+.|+.|...|.+.+|++..
T Consensus 485 ~~~-~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 485 CSP-ALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccc-ccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 533 567788899999999999999999999953
No 191
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.6e-14 Score=141.33 Aligned_cols=216 Identities=19% Similarity=0.176 Sum_probs=164.0
Q ss_pred ccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEe
Q 003423 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (821)
Q Consensus 121 ~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (821)
++.+...|.+|.+.|..+.|+. .|..|++|+.|..|.+||...+.....+...+...++...|.+++ +...+++.+
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~---~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s-~d~ti~~~s 206 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQ---RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS-GDRTIVTSS 206 (559)
T ss_pred HhhhhhcccCCCCccceeeecc---cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC-CCcCceecc
Confidence 4566788999999999999999 999999999999999999999999988888877778888898876 566788999
Q ss_pred eCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCC-EEEEEeCCCe
Q 003423 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRS 279 (821)
Q Consensus 201 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~-~l~s~s~Dg~ 279 (821)
.||++++=.+... ....-...+..|.++|..++.-|+.. -|.||+.|+.
T Consensus 207 ~dgqvr~s~i~~t------------------------------~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~ 256 (559)
T KOG1334|consen 207 RDGQVRVSEILET------------------------------GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAV 256 (559)
T ss_pred ccCceeeeeeccc------------------------------cceecceecccccCccceeeecCCCCCcccccccccc
Confidence 9999998776510 01222345567999999999999764 6899999999
Q ss_pred EEEEecccCcccCCCCceeeeceEEeccce---eEEEEEEc---CCEEEEEeCCCeEEEEcCC---Cc----eeeEeecc
Q 003423 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNA---RVWDCCLT---DSFIITAGEDCTCRVWGSD---GK----QLKMIKEH 346 (821)
Q Consensus 280 i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~i~~v~~~---~~~l~s~~~dg~i~iwd~~---~~----~~~~~~~h 346 (821)
+.-.|++.... ...+ .....+.. ..++++.. ...+++++.|..+++||.. .+ .+.++..|
T Consensus 257 v~~~Dlr~~~p-----a~~~--~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~ 329 (559)
T KOG1334|consen 257 VFHIDLRQDVP-----AEKF--VCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPH 329 (559)
T ss_pred eeeeeeccCCc-----ccee--eeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCc
Confidence 99999988654 2211 12223333 45667776 3689999999999999972 11 12222221
Q ss_pred -----cCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 347 -----IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 347 -----~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
....|++++|+.++.-|+++-.|-.|.++.-
T Consensus 330 hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~ 365 (559)
T KOG1334|consen 330 HLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNK 365 (559)
T ss_pred cccccCcccceeEEecCCccceeeeecccceEEecc
Confidence 2236999999987777777777888888844
No 192
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.59 E-value=3e-15 Score=156.77 Aligned_cols=270 Identities=17% Similarity=0.223 Sum_probs=198.6
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|...|.|..|. .. +++++.|+ |.-++||..+++.++..++.|++ .|..++.+... .+..+++
T Consensus 189 H~naVyca~fD--rt----g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~-ditdlavs~~n----------~~iaaaS 251 (1113)
T KOG0644|consen 189 HRNAVYCAIFD--RT----GRYIITGSDDRLVKIWSMETARCLASCRGHSG-DITDLAVSSNN----------TMIAAAS 251 (1113)
T ss_pred hhhheeeeeec--cc----cceEeecCccceeeeeeccchhhhccCCCCcc-ccchhccchhh----------hhhhhcc
Confidence 67789999998 55 78999998 57899999999999999999887 69998887442 1233344
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeE---
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL--- 171 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~--- 171 (821)
-|..|++|.+..+ .++..+.||.+.|++++|+| .++.+.||++++||..-...+.
T Consensus 252 ~D~vIrvWrl~~~---------------~pvsvLrghtgavtaiafsP-------~~sss~dgt~~~wd~r~~~~~y~pr 309 (1113)
T KOG0644|consen 252 NDKVIRVWRLPDG---------------APVSVLRGHTGAVTAIAFSP-------RASSSDDGTCRIWDARLEPRIYVPR 309 (1113)
T ss_pred cCceEEEEecCCC---------------chHHHHhccccceeeeccCc-------cccCCCCCceEeccccccccccCCC
Confidence 5889999999864 56788999999999999999 3477889999999987111111
Q ss_pred EEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEE
Q 003423 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (821)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (821)
.+.......+.++.| ...+...++|+.|++-..|... .
T Consensus 310 p~~~~~~~~~~s~~~---~~~~~~f~Tgs~d~ea~n~e~~---------------------------------------~ 347 (1113)
T KOG0644|consen 310 PLKFTEKDLVDSILF---ENNGDRFLTGSRDGEARNHEFE---------------------------------------Q 347 (1113)
T ss_pred CCCcccccceeeeec---cccccccccccCCcccccchhh---------------------------------------H
Confidence 111222333444444 2355678888888888888765 0
Q ss_pred EecCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCC
Q 003423 252 LVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGED 327 (821)
Q Consensus 252 ~~~h~~~I~~l~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~d 327 (821)
+..|...+.-+.++.+. .+.+++-.+-.+++|++.++.. . ..+.+|...++.+.++ +....+++.|
T Consensus 348 l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l-----~-----H~l~ghsd~~yvLd~Hpfn~ri~msag~d 417 (1113)
T KOG0644|consen 348 LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL-----L-----HNLMGHSDEVYVLDVHPFNPRIAMSAGYD 417 (1113)
T ss_pred hhhhccceEEEeccccccccceeeeeeeEeeeeecccchh-----h-----hhhcccccceeeeeecCCCcHhhhhccCC
Confidence 11222222222222222 4677788888999999999865 3 5788999999999988 4677899999
Q ss_pred CeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 328 g~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
|...|||+ .|.+++.+....+ .+....|+++|..++....-|.+.+...
T Consensus 418 gst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 418 GSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred CceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEecc
Confidence 99999999 7777776554444 3667799999999999888899988876
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.3e-12 Score=116.24 Aligned_cols=234 Identities=12% Similarity=0.145 Sum_probs=159.3
Q ss_pred eEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc
Q 003423 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 89 ~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
++++..-+|.|.+..++.-.. .+++.+ .-..+...++|+++|+.++|+. .+|++|+ ||.|+=|......
T Consensus 24 ~l~agn~~G~iav~sl~sl~s-~sa~~~----gk~~iv~eqahdgpiy~~~f~d-----~~Lls~g-dG~V~gw~W~E~~ 92 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDS-GSAEPP----GKLKIVPEQAHDGPIYYLAFHD-----DFLLSGG-DGLVYGWEWNEEE 92 (325)
T ss_pred EEEEecCCCeEEEEEehhhhc-cccCCC----CCcceeeccccCCCeeeeeeeh-----hheeecc-CceEEEeeehhhh
Confidence 444555579999999874321 111111 1234455689999999999973 4566665 6999999876432
Q ss_pred e------eEEEccCc------ceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcce
Q 003423 169 I------ILEVHSPE------RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC 236 (821)
Q Consensus 169 ~------~~~~~~~~------~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (821)
. +.+++.|. -+.+.+|.+ .|..+-++.++.|+.++-||++
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~l---dP~enSi~~AgGD~~~y~~dlE------------------------- 144 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWL---DPSENSILFAGGDGVIYQVDLE------------------------- 144 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEe---ccCCCcEEEecCCeEEEEEEec-------------------------
Confidence 2 11222111 122444444 3455555556689999999999
Q ss_pred eeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeec----eEEecc-ceeE
Q 003423 237 FKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS----SVLYGH-NARV 311 (821)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~h-~~~i 311 (821)
+++...+++||++-|.++.--.....++||+.||++|+||.++++. ++.+.+ ..+..| ...|
T Consensus 145 --------~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~-----v~~ie~yk~~~~lRp~~g~wi 211 (325)
T KOG0649|consen 145 --------DGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH-----VSMIEPYKNPNLLRPDWGKWI 211 (325)
T ss_pred --------CCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce-----eEEeccccChhhcCcccCcee
Confidence 7788889999999999998855566899999999999999999876 544422 122222 3457
Q ss_pred EEEEEcCCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 312 WDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 312 ~~v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
-+++-+.+.+++|+ ...+.+|.+ ..++...+.-. . ++..+.|.. ..++++|....+.-|.+.+
T Consensus 212 gala~~edWlvCGg-Gp~lslwhLrsse~t~vfpip-a-~v~~v~F~~--d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 212 GALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFPIP-A-RVHLVDFVD--DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred EEEeccCceEEecC-CCceeEEeccCCCceEEEecc-c-ceeEeeeec--ceEEEeccccceeeeeecc
Confidence 78888888888766 457899999 45555555433 3 367777764 5688888888899998865
No 194
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=6.2e-15 Score=160.89 Aligned_cols=245 Identities=16% Similarity=0.241 Sum_probs=177.7
Q ss_pred eEEEEEeccCCCCCCcceEEeec-CCeEEEEECCC---C---eeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEE
Q 003423 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA---G---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (821)
Q Consensus 20 Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t---~---~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~ 92 (821)
-+.|+|...-+ ....+|+.|. ||.|.+||... + ..+.+...|++ .|.++.|++.. ..+++
T Consensus 67 F~kL~W~~~g~--~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G-~V~gLDfN~~q----------~nlLA 133 (1049)
T KOG0307|consen 67 FNKLAWGSYGS--HSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTG-PVLGLDFNPFQ----------GNLLA 133 (1049)
T ss_pred ceeeeecccCC--CccceeeccccCCceEEecchhhccCcchHHHhhhcccCC-ceeeeeccccC----------Cceee
Confidence 45777772112 0113566665 89999999875 2 35677777776 79999999663 23555
Q ss_pred EEc-CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeE
Q 003423 93 LFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (821)
Q Consensus 93 ~~g-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~ 171 (821)
.++ ++.|.|||+...+ ..|.+ - -..-.+.|.+++|+. .....||+++.+|.+.|||++..+.+.
T Consensus 134 SGa~~geI~iWDlnn~~---tP~~~--------~--~~~~~~eI~~lsWNr--kvqhILAS~s~sg~~~iWDlr~~~pii 198 (1049)
T KOG0307|consen 134 SGADDGEILIWDLNKPE---TPFTP--------G--SQAPPSEIKCLSWNR--KVSHILASGSPSGRAVIWDLRKKKPII 198 (1049)
T ss_pred ccCCCCcEEEeccCCcC---CCCCC--------C--CCCCcccceEeccch--hhhHHhhccCCCCCceeccccCCCccc
Confidence 544 6999999998542 11111 0 112457899999986 245689999999999999999988877
Q ss_pred EEccCcc-eeEEEEeeccCCccCeEEEEEeeC---CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccccccee
Q 003423 172 EVHSPER-CLLYSMKLWGDNLEALRIASGTIY---NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (821)
Q Consensus 172 ~~~~~~~-~~~~s~~~~~~s~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (821)
.+..+.+ +.+-++.+++. +...|++++.| -.|.+||++ ....
T Consensus 199 ~ls~~~~~~~~S~l~WhP~--~aTql~~As~dd~~PviqlWDlR--------------------------------~ass 244 (1049)
T KOG0307|consen 199 KLSDTPGRMHCSVLAWHPD--HATQLLVASGDDSAPVIQLWDLR--------------------------------FASS 244 (1049)
T ss_pred ccccCCCccceeeeeeCCC--CceeeeeecCCCCCceeEeeccc--------------------------------ccCC
Confidence 7776555 33445556544 33445555443 368999998 2446
Q ss_pred eEEEEecCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEE
Q 003423 248 NLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIIT 323 (821)
Q Consensus 248 ~~~~~~~h~~~I~~l~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s 323 (821)
+++++++|...|.++.|++.+ ++|+|++.|+.|.+|+..+++. + ..+......+..+.|. +..++.
T Consensus 245 P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv-----l-----~~~p~~~nW~fdv~w~pr~P~~~A~ 314 (1049)
T KOG0307|consen 245 PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV-----L-----GELPAQGNWCFDVQWCPRNPSVMAA 314 (1049)
T ss_pred chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE-----e-----eecCCCCcceeeeeecCCCcchhhh
Confidence 677888999999999999965 8999999999999999999765 3 3455566778889998 579999
Q ss_pred EeCCCeEEEEcCC
Q 003423 324 AGEDCTCRVWGSD 336 (821)
Q Consensus 324 ~~~dg~i~iwd~~ 336 (821)
++.||.|.|+.+.
T Consensus 315 asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 315 ASFDGKISIYSLQ 327 (1049)
T ss_pred heeccceeeeeee
Confidence 9999999999984
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.59 E-value=2.1e-13 Score=128.06 Aligned_cols=224 Identities=12% Similarity=0.109 Sum_probs=168.1
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCe---eeeEEEeeccccEEeEEeccccCCCCCCccceeeEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT---LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~---~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l 91 (821)
..+||+|.||+ +| +..+|.+- ...|.||.....+ ..++++.|.. .|.+|.|.|.. ++++
T Consensus 9 ~~~pitchAwn--~d----rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~-~vtgvdWap~s----------nrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWN--SD----RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK-IVTGVDWAPKS----------NRIV 71 (361)
T ss_pred ccCceeeeeec--CC----CceEEeccCCceEEEEEecCCCCceeceehhhhCc-ceeEEeecCCC----------Ccee
Confidence 46899999999 88 55666655 6799999987654 6677776555 79999999763 3678
Q ss_pred EEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce--
Q 003423 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-- 169 (821)
Q Consensus 92 ~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~-- 169 (821)
.+..|+...+|....+. .+++...+..++...+++.|+| .++.+|+|+.-..|.||-++..+-
T Consensus 72 tcs~drnayVw~~~~~~------------~WkptlvLlRiNrAAt~V~WsP---~enkFAVgSgar~isVcy~E~ENdWW 136 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGG------------TWKPTLVLLRINRAATCVKWSP---KENKFAVGSGARLISVCYYEQENDWW 136 (361)
T ss_pred EccCCCCccccccCCCC------------eeccceeEEEeccceeeEeecC---cCceEEeccCccEEEEEEEeccccee
Confidence 88889999999984321 2566777788999999999999 999999999999999998876543
Q ss_pred -eEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceee
Q 003423 170 -ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (821)
Q Consensus 170 -~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (821)
-+.++.+.++.+.++.++ ++..++++|+.|+..+|+...-.+.. +.+ ...+-+..+ .-+..
T Consensus 137 VsKhikkPirStv~sldWh---pnnVLlaaGs~D~k~rVfSayIK~Vd----ekp--ap~pWgsk~---------PFG~l 198 (361)
T KOG1523|consen 137 VSKHIKKPIRSTVTSLDWH---PNNVLLAAGSTDGKCRVFSAYIKGVD----EKP--APTPWGSKM---------PFGQL 198 (361)
T ss_pred hhhhhCCccccceeeeecc---CCcceecccccCcceeEEEEeeeccc----cCC--CCCCCccCC---------cHHHH
Confidence 355667778888888875 67889999999999999987622111 111 000111100 12344
Q ss_pred EEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCc
Q 003423 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (821)
Q Consensus 249 ~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~ 289 (821)
+.++....+.|..+.|+|.|..|+=.+-|.++.+=|.....
T Consensus 199 m~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 199 MSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred HHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 44554567899999999999999999999999999987754
No 196
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=4.2e-15 Score=145.91 Aligned_cols=263 Identities=16% Similarity=0.205 Sum_probs=200.4
Q ss_pred EEEEeccCCCCCCcceEEe-ecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEE
Q 003423 22 ALCFVHLPSHLSSLPFLLA-GSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVK 100 (821)
Q Consensus 22 ~l~~~~~p~~~~~~~~l~~-g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~ 100 (821)
.+.++ .+ ++.|+. |.-|.|..+|+.++++...+.+.+ .|.++.|.-. ..++|++-.+.+.
T Consensus 134 ~~~yt--rn----GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E--tv~Dv~~LHn-----------eq~~AVAQK~y~y 194 (545)
T KOG1272|consen 134 HLDYT--RN----GRHLLLGGRKGHLAAFDWVTKKLHFEINVME--TVRDVTFLHN-----------EQFFAVAQKKYVY 194 (545)
T ss_pred eeeec--CC----ccEEEecCCccceeeeecccceeeeeeehhh--hhhhhhhhcc-----------hHHHHhhhhceEE
Confidence 45556 55 455555 557999999999999999988755 4888888743 3688899999999
Q ss_pred EEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCccee
Q 003423 101 LFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180 (821)
Q Consensus 101 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 180 (821)
|||-. +..++.++.|. .|..+.|.| .--+|++++..|.++--|+.+|+.+..+....+.
T Consensus 195 vYD~~----------------GtElHClk~~~-~v~rLeFLP---yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~- 253 (545)
T KOG1272|consen 195 VYDNN----------------GTELHCLKRHI-RVARLEFLP---YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGR- 253 (545)
T ss_pred EecCC----------------CcEEeehhhcC-chhhhcccc---hhheeeecccCCceEEEeechhhhhHHHHccCCc-
Confidence 99965 46788888774 599999999 8888999999999999999999988777644432
Q ss_pred EEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEE
Q 003423 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF 260 (821)
Q Consensus 181 ~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 260 (821)
+..|. .+|-...+-.|...|+|.+|+.. ...++..+..|.++|.
T Consensus 254 ~~vm~---qNP~NaVih~GhsnGtVSlWSP~---------------------------------skePLvKiLcH~g~V~ 297 (545)
T KOG1272|consen 254 TDVMK---QNPYNAVIHLGHSNGTVSLWSPN---------------------------------SKEPLVKILCHRGPVS 297 (545)
T ss_pred cchhh---cCCccceEEEcCCCceEEecCCC---------------------------------CcchHHHHHhcCCCcc
Confidence 22222 25777889999999999999998 6667777778999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC--C--
Q 003423 261 RIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS--D-- 336 (821)
Q Consensus 261 ~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~--~-- 336 (821)
+|++.++|+++||.+.|+.++|||++.-.. + .+... .-+...++++..-++.++....+.+|.- .
T Consensus 298 siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q-----l-----~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s 366 (545)
T KOG1272|consen 298 SIAVDRGGRYMATTGLDRKVKIWDLRNFYQ-----L-----HTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDALKGS 366 (545)
T ss_pred eEEECCCCcEEeecccccceeEeeeccccc-----c-----ceeec-CCCccccccccccceeeecCCeeeeehhhhcCC
Confidence 999999999999999999999999998643 2 12222 3455678888777777888889999974 3
Q ss_pred CceeeEeeccc-CCCeEEEEEecCCCEEEEEeCCCc
Q 003423 337 GKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDSA 371 (821)
Q Consensus 337 ~~~~~~~~~h~-~~~i~~l~~~~~~~~l~tg~~dg~ 371 (821)
+.....+-.|. +..|..+.|+|-...|-.|-.-|.
T Consensus 367 ~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 367 GHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred CCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 22222222232 236899999997777766665553
No 197
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.58 E-value=4.3e-15 Score=155.62 Aligned_cols=118 Identities=22% Similarity=0.479 Sum_probs=106.4
Q ss_pred eeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEE
Q 003423 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT 323 (821)
Q Consensus 246 ~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s 323 (821)
.+.+..+.||...|.|+.|...|.++++|++|+.++||...+..+ . +...||.+.|+.++.+ +.++++
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~-----l-----As~rGhs~ditdlavs~~n~~iaa 249 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC-----L-----ASCRGHSGDITDLAVSSNNTMIAA 249 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhh-----h-----ccCCCCccccchhccchhhhhhhh
Confidence 345566789999999999999999999999999999999888765 3 6899999999999988 568889
Q ss_pred EeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 324 AGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 324 ~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
++.|..|++|.+ ++.++..+.+|.+ .|++++|+|-. +.+.||++++||.+
T Consensus 250 aS~D~vIrvWrl~~~~pvsvLrghtg-avtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 250 ASNDKVIRVWRLPDGAPVSVLRGHTG-AVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred cccCceEEEEecCCCchHHHHhcccc-ceeeeccCccc----cCCCCCceEecccc
Confidence 999999999999 8999999999999 69999999954 78899999999985
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=1.2e-12 Score=125.52 Aligned_cols=243 Identities=14% Similarity=0.141 Sum_probs=161.1
Q ss_pred Ccceeeccce------eeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEee--ccccEEeEEecccc
Q 003423 6 LSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVF--HGIRLHGISCNFIN 77 (821)
Q Consensus 6 i~~w~~~~~~------~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~--~~~~i~~i~~~~~~ 77 (821)
+++.+...+. +..+|-++.++ ++.|++.-...|.|||+++.++++++..- ....+.++++++..
T Consensus 70 Lkv~~~Kk~~~ICe~~fpt~IL~VrmN--------r~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n 141 (391)
T KOG2110|consen 70 LKVVHFKKKTTICEIFFPTSILAVRMN--------RKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN 141 (391)
T ss_pred EEEEEcccCceEEEEecCCceEEEEEc--------cceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCC
Confidence 4555555443 55678888888 44666666556999999999999999865 22335555555331
Q ss_pred CCCCCCccceeeEEEEEc---CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEE
Q 003423 78 CTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (821)
Q Consensus 78 ~~~~~~~~~~~~~l~~~g---~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~ 154 (821)
.+++.-+ .|.|.|||... ++....+..|++.+-+++|+| +|.+||||+
T Consensus 142 -----------~ylAyp~s~t~GdV~l~d~~n---------------l~~v~~I~aH~~~lAalafs~---~G~llATAS 192 (391)
T KOG2110|consen 142 -----------CYLAYPGSTTSGDVVLFDTIN---------------LQPVNTINAHKGPLAALAFSP---DGTLLATAS 192 (391)
T ss_pred -----------ceEEecCCCCCceEEEEEccc---------------ceeeeEEEecCCceeEEEECC---CCCEEEEec
Confidence 2555444 48999999873 567788889999999999999 999999999
Q ss_pred CCCc-EEEEEccCCceeEEEccCcc-eeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCC----CCCCCcccC
Q 003423 155 SDNS-IRVWDISNSSIILEVHSPER-CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLL----NSPEGNHAH 228 (821)
Q Consensus 155 ~d~~-i~iwd~~~~~~~~~~~~~~~-~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~ 228 (821)
..|+ |||+.+.+|+.+.+++.... +.+||++| ++++.+|++.+..++|+++.+......+.. .........
T Consensus 193 eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F---s~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~s 269 (391)
T KOG2110|consen 193 EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF---SPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVS 269 (391)
T ss_pred cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE---CCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhh
Confidence 9998 69999999999999986654 45899999 688889999999999999999844322211 000000000
Q ss_pred CCCCCcceeeecccccceeeEEEEecCCCc---EEEEEEcCCCCEEEEEeCCCeEEEEecccC
Q 003423 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGS---IFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (821)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~ 288 (821)
........-.+..-....+...+.+...+. +..+.-.+...++..++.||.+..+.+...
T Consensus 270 k~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 270 KAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred hhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 000000000000000112233333333332 333333346778888999999999988764
No 199
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.8e-13 Score=137.01 Aligned_cols=172 Identities=14% Similarity=0.166 Sum_probs=126.3
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|.|-|.||+|+ .| +.+|++|+ |-.+.|||.-.-++++.+...+..+|.+..|.|.. .+ ..++.++
T Consensus 49 H~GCVN~LeWn--~d----G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t----nn----riv~sgA 114 (758)
T KOG1310|consen 49 HTGCVNCLEWN--AD----GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT----NN----RIVLSGA 114 (758)
T ss_pred ccceecceeec--CC----CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC----CC----eEEEecc
Confidence 88999999999 77 88999999 57999999999999999987777789999998652 33 3455567
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCC-CEEEEEECCCcEEEEEccCCcee-EE
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSII-LE 172 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~-~~l~t~~~d~~i~iwd~~~~~~~-~~ 172 (821)
||+.|+++|+...+ +.+++.. ..+..+....|.+.|.-++..| ++ +.+.+|+.||+|+-+|+.....- ..
T Consensus 115 gDk~i~lfdl~~~~--~~~~d~~---~~~~~~~~~cht~rVKria~~p---~~PhtfwsasEDGtirQyDiREph~c~p~ 186 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSK--EGGMDHG---MEETTRCWSCHTDRVKRIATAP---NGPHTFWSASEDGTIRQYDIREPHVCNPD 186 (758)
T ss_pred CcceEEEEeccccc--ccccccC---ccchhhhhhhhhhhhhheecCC---CCCceEEEecCCcceeeecccCCccCCcc
Confidence 89999999998532 1111111 1244566778999999999988 66 78999999999999999863221 11
Q ss_pred ------Ec--cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 173 ------VH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 173 ------~~--~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
+. .+..-.++++.+. ..+..+||+|+.|-..++||.+
T Consensus 187 ~~~~~~l~ny~~~lielk~ltis--p~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTIS--PSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred ccccHHHHHhchhhheeeeeeec--CCCCceEEecCCCchhhhhhhh
Confidence 11 0111124444442 2356799999999999999954
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=6.5e-13 Score=143.19 Aligned_cols=304 Identities=15% Similarity=0.191 Sum_probs=191.7
Q ss_pred cEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCc--ceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE--RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 134 ~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
.-..+.|+| -...++++...-.|++||.+.++.+..+.... ...+..+.+... .|..++.+|+.||.|+||+-.
T Consensus 1066 ~pk~~~~hp---f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe-~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHP---FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINE-QDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCceeeecC---CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecc-cchhheeeeccCceEEEeccc
Confidence 355678888 66788988877789999999999887776433 223556666543 577899999999999999865
Q ss_pred cCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCccc
Q 003423 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (821)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~ 291 (821)
...- +..+.+..|..- .-.+.+-.+.=.-+.|.....+|+++|+-+.|||||......
T Consensus 1142 ~~~~----------------~~~eLVTaw~~L-----s~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~- 1199 (1387)
T KOG1517|consen 1142 ADKW----------------KKPELVTAWSSL-----SDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV- 1199 (1387)
T ss_pred cccc----------------CCceeEEeeccc-----cccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee-
Confidence 1100 000111111000 000011111113467877777777777789999999988654
Q ss_pred CCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcCC----CceeeEeecccCC-CeEEEEEecCCC-E
Q 003423 292 DSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSD----GKQLKMIKEHIGR-GIWRCLYDSLSS-L 362 (821)
Q Consensus 292 ~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~~----~~~~~~~~~h~~~-~i~~l~~~~~~~-~ 362 (821)
.. ....+...-|+++.-. ++.++.|..||.+++||.. ...+..++.|... +|..+.+.+.|- .
T Consensus 1200 ----~~----diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~e 1271 (1387)
T KOG1517|consen 1200 ----VA----DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGE 1271 (1387)
T ss_pred ----Ee----ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcc
Confidence 22 1233344556666544 6899999999999999982 3467778888772 388889988764 5
Q ss_pred EEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcE
Q 003423 363 LVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYL 442 (821)
Q Consensus 363 l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~ 442 (821)
|++|+.||.|++||++.....++ +++. ..++ -+...+++..++...++++++.+.+
T Consensus 1272 lvSgs~~G~I~~~DlR~~~~e~~---------------~~iv--------~~~~-yGs~lTal~VH~hapiiAsGs~q~i 1327 (1387)
T KOG1517|consen 1272 LVSGSQDGDIQLLDLRMSSKETF---------------LTIV--------AHWE-YGSALTALTVHEHAPIIASGSAQLI 1327 (1387)
T ss_pred eeeeccCCeEEEEecccCccccc---------------ceee--------eccc-cCccceeeeeccCCCeeeecCcceE
Confidence 99999999999999976321111 0110 0000 0123788888888888887766555
Q ss_pred EEEEecCCCc--ceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecC
Q 003423 443 YHTKLCDMDS--VNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (821)
Q Consensus 443 ~~~~i~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~ 503 (821)
..+.+....- .+.....-.....++.|+.+.+- .-++|.|..|..|.||....
T Consensus 1328 kIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~--------~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1328 KIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPH--------RLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred EEEecChhhhcccccCcccccCcCCCcceeeecch--------hHhhhhccCCceEEEeecCC
Confidence 4333322111 11111122233456677777654 36889999999999998554
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.56 E-value=1.6e-12 Score=138.58 Aligned_cols=272 Identities=12% Similarity=0.105 Sum_probs=175.7
Q ss_pred CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcCCC-ce--e----eEeeccc
Q 003423 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDG-KQ--L----KMIKEHI 347 (821)
Q Consensus 278 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~~~-~~--~----~~~~~h~ 347 (821)
+.+.+|++..... . .....-...|.+++|+ +++++.|..+|.|.+||+.+ .. . .....|.
T Consensus 222 ~~~~vW~~~~p~~-----P-----e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~ 291 (555)
T KOG1587|consen 222 GVLLVWSLKNPNT-----P-----ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHS 291 (555)
T ss_pred ceEEEEecCCCCC-----c-----eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCC
Confidence 4799999998733 2 3455567789999997 68999999999999999932 21 1 1233466
Q ss_pred CCCeEEEEEecCC--CEEEEEeCCCcEEEEEcCCcCC--CcccCCccccccCCCcceEEeecCCcccceeccCCCCcceE
Q 003423 348 GRGIWRCLYDSLS--SLLVTAGFDSAIKVHQFQAFLP--GSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVR 423 (821)
Q Consensus 348 ~~~i~~l~~~~~~--~~l~tg~~dg~I~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 423 (821)
. +++.+.|..+. .-+++++.||.|..|+++.-.. ...... ...+........-.++
T Consensus 292 ~-~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~-------------------~~~~~~~~~~~~~~~t 351 (555)
T KOG1587|consen 292 E-PVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLE-------------------SKKHKGQQSSKAVGAT 351 (555)
T ss_pred c-CeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccc-------------------ccccccccccccccee
Confidence 6 68899886544 4499999999999998854211 000000 0000011112234588
Q ss_pred EEEeecC--CeEEEEecCCcEEEEEecCCCcce---eeEe-eeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEE
Q 003423 424 CLHLTSE--DTLYIATNHGYLYHTKLCDMDSVN---WNKI-LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMT 497 (821)
Q Consensus 424 ~l~f~~~--~~~l~~~~~g~~~~~~i~~~~~~~---~~~~-~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~ 497 (821)
+++|.+. ..++++|..|.++...-....... ++.. .-..+.++++++...+-+ ...+++++ |.+++
T Consensus 352 ~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~-------~k~fls~g-DW~vr 423 (555)
T KOG1587|consen 352 SLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY-------PKNFLSVG-DWTVR 423 (555)
T ss_pred eEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCc-------cceeeeec-cceeE
Confidence 9999874 489999999999886554433211 1111 112346677777765543 23444444 89999
Q ss_pred EEEecCCCC-------CCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceee
Q 003423 498 IVRVVGDVH-------TPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVF 570 (821)
Q Consensus 498 i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 570 (821)
||.-..... ....+...+|+|..+ ..++++..||.|.+||+.......
T Consensus 424 iWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp--------------avF~~~d~~G~l~iWDLl~~~~~P----------- 478 (555)
T KOG1587|consen 424 IWSEDVIASPLLSLDSSPDYVTDVAWSPTRP--------------AVFATVDGDGNLDIWDLLQDDEEP----------- 478 (555)
T ss_pred eccccCCCCcchhhhhccceeeeeEEcCcCc--------------eEEEEEcCCCceehhhhhccccCC-----------
Confidence 998652211 223344556655432 578889999999999998763211
Q ss_pred eeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccc
Q 003423 571 LVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLL 614 (821)
Q Consensus 571 ~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~ 614 (821)
... ...+....+.+.|+++++.|++|+..|++.+|++...+.
T Consensus 479 -v~s-~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l~ 520 (555)
T KOG1587|consen 479 -VLS-QKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESLA 520 (555)
T ss_pred -ccc-ccccccccceeecCCCCcEEEEecCCCcEEEEEcCchhh
Confidence 111 122255567888899999999999999999999986543
No 202
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.53 E-value=2.3e-12 Score=141.31 Aligned_cols=325 Identities=13% Similarity=0.186 Sum_probs=189.5
Q ss_pred eEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcCC---Cc-----eeeEeecccCCCeEEEEEecCCCEEEEEeCCC
Q 003423 302 SVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSD---GK-----QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370 (821)
Q Consensus 302 ~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~~---~~-----~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg 370 (821)
+.+..|...|..++.+ ..+++||+.||+|++|+.. +. ...++..... .+..+...+.+..+|.++.||
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~s-r~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGS-RVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCC-ceEEEEeccCCCeEEEEcCCC
Confidence 6788899999888887 3799999999999999982 22 2223332233 589999999999999999999
Q ss_pred cEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeec--CC-eEEEEecCCcEEEEEe
Q 003423 371 AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS--ED-TLYIATNHGYLYHTKL 447 (821)
Q Consensus 371 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~--~~-~~l~~~~~g~~~~~~i 447 (821)
.|++.+++......... ...+.++.. ..+..+..-+|.. .. .++.+|..+.+. .
T Consensus 1121 ~v~~~~id~~~~~~~~~-------------~~~ri~n~~-------~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv---~ 1177 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVA-------------TQVRIPNLK-------KDGVVVSMHAFTAIVQSHVLVYATDLSRIV---S 1177 (1431)
T ss_pred eEEEEEcccccccccee-------------eeeeccccc-------CCCceEEeecccccccceeEEEEEeccceE---E
Confidence 99999996521111100 011111111 1112234444443 23 455667667665 4
Q ss_pred cCCCcce--eeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceee
Q 003423 448 CDMDSVN--WNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLL 525 (821)
Q Consensus 448 ~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (821)
|+..... |..-. ....+.++++.+++ .+.++++|+..|.+.+||++-+.. ...|+......+.
T Consensus 1178 ~D~r~~~~~w~lk~-~~~hG~vTSi~idp--------~~~WlviGts~G~l~lWDLRF~~~------i~sw~~P~~~~i~ 1242 (1431)
T KOG1240|consen 1178 WDTRMRHDAWRLKN-QLRHGLVTSIVIDP--------WCNWLVIGTSRGQLVLWDLRFRVP------ILSWEHPARAPIR 1242 (1431)
T ss_pred ecchhhhhHHhhhc-CccccceeEEEecC--------CceEEEEecCCceEEEEEeecCce------eecccCcccCCcc
Confidence 4433221 33222 22356666666655 448999999999999999875433 4455544445666
Q ss_pred eeEEeecCC-CeE-EEEEC-CCCcEEEeeecCCCCcccccCC-ccceee--eeEE-EecccCceEEEEEeecCCCEEEEE
Q 003423 526 GTYWCKSLG-HRF-IFTAD-PKGRLKLWQLCDPFSSVCYESS-KTNNVF--LVAE-FSSCFGARIMCLDASFEDEVLFCG 598 (821)
Q Consensus 526 ~~~~~~~~~-~~~-l~~~~-~dg~i~iwd~~~~~~~~~~~~~-~~~~~~--~~~~-~~~~h~~~I~~l~~s~~~~~L~sg 598 (821)
.+..|..+. ... +.++. ..+.|.+|++..+......-+. ..-.++ ++.. -...+.-......+..-+.++.+|
T Consensus 1243 ~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltg 1322 (1431)
T KOG1240|consen 1243 HVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTG 1322 (1431)
T ss_pred eEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeec
Confidence 666665543 234 44444 5778999999887321111011 000000 0000 001222223334444456799999
Q ss_pred cCCCcEEEEecCccccc----ccc----------------cc-----c----c------------cccCccccccc-ccC
Q 003423 599 DLRGNLVLFPLLRDLLN----DKS----------------VA-----L----H------------VEVSPLNYFKG-AHG 636 (821)
Q Consensus 599 s~dG~i~iw~~~~~~~~----~~~----------------~~-----~----~------------~~~~~~~~~~~-~h~ 636 (821)
+.|+.|+.||....... .++ .+ + + ....+...... .|
T Consensus 1323 gsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H- 1401 (1431)
T KOG1240|consen 1323 GSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYH- 1401 (1431)
T ss_pred CCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccc-
Confidence 99999999997643221 000 00 0 0 00000111111 34
Q ss_pred CcceEEEEEEecCCCceEEEEecCCCeEEEEE
Q 003423 637 ISTVSTLSVAKLRSNQTEIRSTGGDGCICYLE 668 (821)
Q Consensus 637 ~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~ 668 (821)
.+.||.++... .++.+|+++++||.|++|.
T Consensus 1402 ~d~Itdma~~~--~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1402 HDPITDMATLK--SEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cchhhhhhhhc--cCccEEEEecCCCeeeecC
Confidence 56788887775 4578999999999999994
No 203
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.52 E-value=1.9e-11 Score=128.12 Aligned_cols=273 Identities=15% Similarity=0.129 Sum_probs=163.4
Q ss_pred eEEeecCCeEEEEECCC-Ce--eeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE-EcCCeEEEEEEeecCCCCC
Q 003423 37 FLLAGSGSQVLLYDLEA-GT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNS 112 (821)
Q Consensus 37 ~l~~g~~~~i~iwd~~t-~~--~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~-~g~~~v~i~~~~~~~~~~~ 112 (821)
|++.+.++.|.+||+.+ |+ .+.+++. ....+.+.++|++ ..++++ ..++.|.+|+++...
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~----------~~lyv~~~~~~~i~~~~~~~~g---- 68 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDK----------RHLYVGVRPEFRVLSYRIADDG---- 68 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec--CCCCccEEECCCC----------CEEEEEECCCCcEEEEEECCCC----
Confidence 44556689999999974 43 3444432 2347778888653 233333 457899999986211
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC-CCcEEEEEccC-Cce---eEEEccCcceeEEEEeec
Q 003423 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISN-SSI---ILEVHSPERCLLYSMKLW 187 (821)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~-d~~i~iwd~~~-~~~---~~~~~~~~~~~~~s~~~~ 187 (821)
.+....... ..+....++|+| ++++|++++. ++.|.+|++.+ +.. +..+.... ....+.+
T Consensus 69 --------~l~~~~~~~-~~~~p~~i~~~~---~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~--~~~~~~~- 133 (330)
T PRK11028 69 --------ALTFAAESP-LPGSPTHISTDH---QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE--GCHSANI- 133 (330)
T ss_pred --------ceEEeeeec-CCCCceEEEECC---CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC--cccEeEe-
Confidence 122222222 223467899999 9998887764 88999999974 322 22222211 1233334
Q ss_pred cCCccCeEEEE-EeeCCEEEEEEcccCC-cccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEc
Q 003423 188 GDNLEALRIAS-GTIYNEIIVWKVDWEH-VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS 265 (821)
Q Consensus 188 ~~s~~~~~l~s-g~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 265 (821)
+|++.++++ ...++.|.+||+.... +.+ .......... ......++|+
T Consensus 134 --~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~---------------------------~~~~~~~~~~-g~~p~~~~~~ 183 (330)
T PRK11028 134 --DPDNRTLWVPCLKEDRIRLFTLSDDGHLVA---------------------------QEPAEVTTVE-GAGPRHMVFH 183 (330)
T ss_pred --CCCCCEEEEeeCCCCEEEEEEECCCCcccc---------------------------cCCCceecCC-CCCCceEEEC
Confidence 577777754 5567999999997210 000 0000011111 2235679999
Q ss_pred CCCCEEEEEeC-CCeEEEEecccCc-ccCCCCceeeeceEEec------cceeEEEEEEc--CCEEEEEe-CCCeEEEEc
Q 003423 266 SCGSKLVSVSD-DRSARIWEVRAEY-WKDSDSIEEVGSSVLYG------HNARVWDCCLT--DSFIITAG-EDCTCRVWG 334 (821)
Q Consensus 266 ~~~~~l~s~s~-Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~------h~~~i~~v~~~--~~~l~s~~-~dg~i~iwd 334 (821)
|++++|+++.. +++|.+|++.... . .+.+ ..+.. +......+.++ +++++++. .++.|.+|+
T Consensus 184 pdg~~lyv~~~~~~~v~v~~~~~~~~~-----~~~~--~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 184 PNQQYAYCVNELNSSVDVWQLKDPHGE-----IECV--QTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFS 256 (330)
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCCC-----EEEE--EEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence 99999977766 8999999997421 1 1222 11111 11122357777 46787775 478999999
Q ss_pred C--CCceeeEeecc--cCCCeEEEEEecCCCEEEEEeC-CCcEEEEEcC
Q 003423 335 S--DGKQLKMIKEH--IGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQ 378 (821)
Q Consensus 335 ~--~~~~~~~~~~h--~~~~i~~l~~~~~~~~l~tg~~-dg~I~iwd~~ 378 (821)
+ ++... ++..+ .+...+.++++|+|++|+++.. +++|.+|+++
T Consensus 257 i~~~~~~~-~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 257 VSEDGSVL-SFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EeCCCCeE-EEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 8 23221 22222 1123568899999999988775 8999999884
No 204
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=2.9e-13 Score=135.68 Aligned_cols=186 Identities=16% Similarity=0.178 Sum_probs=141.5
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (821)
+.+.+.|.||.+-|.|++|+. +|.+|++|+.|-.+.|||....+.+..+...+...++++.|.+.+ +..++++|..
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~---dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t-nnriv~sgAg 115 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNA---DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT-NNRIVLSGAG 115 (758)
T ss_pred cchhhhhccccceecceeecC---CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC-CCeEEEeccC
Confidence 455678999999999999999 999999999999999999999899999988888889999999885 5678999999
Q ss_pred CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCC-CEEEEEeCCCeE
Q 003423 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSA 280 (821)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~~l~s~s~Dg~i 280 (821)
|..|+++|+......... .......+.+..|...|..|+-.|++ ..+-+++.||+|
T Consensus 116 Dk~i~lfdl~~~~~~~~d-----------------------~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGti 172 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGGMD-----------------------HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTI 172 (758)
T ss_pred cceEEEEecccccccccc-----------------------cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcce
Confidence 999999999821111100 00223444556899999999999988 789999999999
Q ss_pred EEEecccCcccCCCC-ceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcC
Q 003423 281 RIWEVRAEYWKDSDS-IEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS 335 (821)
Q Consensus 281 ~iwd~~~~~~~~~~~-~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~ 335 (821)
|-+|++......+.. .... ...+...--...++..+ +.+|+.|+.|-..++||.
T Consensus 173 rQyDiREph~c~p~~~~~~~-l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 173 RQYDIREPHVCNPDEDCPSI-LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eeecccCCccCCccccccHH-HHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 999999854311110 0000 00111122334667776 589999999999999995
No 205
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.51 E-value=8.6e-11 Score=127.78 Aligned_cols=152 Identities=20% Similarity=0.246 Sum_probs=116.3
Q ss_pred ccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCC----cEEEEEEcC
Q 003423 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG----SIFRIEWSS 266 (821)
Q Consensus 191 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----~I~~l~~s~ 266 (821)
.+...++.++.++.+.+||.... .....+...+. ...-+-+++
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~---------------------------------~~~~~i~~~er~~l~~~~~~g~s~ 143 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNS---------------------------------SVLSKIQSDERCTLYSSLIIGDSA 143 (967)
T ss_pred hhcceEEEEEcCceEEEEecccC---------------------------------ceehhcCCCceEEEEeEEEEeccC
Confidence 56788999999999999998822 22222211111 122244566
Q ss_pred CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceee-E
Q 003423 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLK-M 342 (821)
Q Consensus 267 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~-~ 342 (821)
+.-++++|+.-+.|.+|+...... . ..+.||.+.|.++.++ +.++++.++|.++|+|++ +.+... +
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~dn~-----p-----~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~ 213 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHEDNK-----P-----IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCT 213 (967)
T ss_pred cEEEEEeccccccEEEEeccccCC-----c-----ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcc
Confidence 667899999999999999884333 1 3689999999999996 799999999999999999 444444 6
Q ss_pred eecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCC
Q 003423 343 IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESH 388 (821)
Q Consensus 343 ~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~ 388 (821)
.-+|..+ +|.+.+.|+ .++|++.|-+.++|+.+...+..+++|
T Consensus 214 ~fgHsaR-vw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h 256 (967)
T KOG0974|consen 214 GFGHSAR-VWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEH 256 (967)
T ss_pred cccccce-eEEEEeccc--eeEEeccceEEEEEecccceehhhhhh
Confidence 7789984 999999997 899999999999998877666666555
No 206
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.50 E-value=5.3e-11 Score=124.74 Aligned_cols=259 Identities=16% Similarity=0.211 Sum_probs=158.0
Q ss_pred CCCCCcceeecc-ce--------eeeeeEEEEEeccCCCCCCcceEEeec--CCeEEEEECC-CCee--eeEEEeecccc
Q 003423 2 GKKDLSEWRLDV-GQ--------YLGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLE-AGTL--IRPFQVFHGIR 67 (821)
Q Consensus 2 ~~~~i~~w~~~~-~~--------~~~~Vt~l~~~~~p~~~~~~~~l~~g~--~~~i~iwd~~-t~~~--~~~~~~~~~~~ 67 (821)
.++.|.+|++.+ ++ ..+....++++ |+ +++|+++. ++.|.+|+++ ++++ +.... ....
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~s--pd----~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~ 81 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVIS--PD----KRHLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGS 81 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEecCCCCccEEEC--CC----CCEEEEEECCCCcEEEEEECCCCceEEeeeec--CCCC
Confidence 478899999964 32 22346778899 98 66666553 6899999997 3443 22222 2224
Q ss_pred EEeEEeccccCCCCCCccceeeEEEE-EcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCC
Q 003423 68 LHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (821)
Q Consensus 68 i~~i~~~~~~~~~~~~~~~~~~~l~~-~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~ 146 (821)
...+.++|++ + .++++ .+++.+.+|+++.... ..+....+.+. .....++++| +
T Consensus 82 p~~i~~~~~g-------~---~l~v~~~~~~~v~v~~~~~~g~-----------~~~~~~~~~~~-~~~~~~~~~p---~ 136 (330)
T PRK11028 82 PTHISTDHQG-------R---FLFSASYNANCVSVSPLDKDGI-----------PVAPIQIIEGL-EGCHSANIDP---D 136 (330)
T ss_pred ceEEEECCCC-------C---EEEEEEcCCCeEEEEEECCCCC-----------CCCceeeccCC-CcccEeEeCC---C
Confidence 6678888553 2 33333 4589999999963210 01122223322 3467788999 9
Q ss_pred CCEEEEE-ECCCcEEEEEccCCceeEE-----EccCcceeEEEEeeccCCccCeEEEEEee-CCEEEEEEcccCCcccCC
Q 003423 147 NRSLAIG-CSDNSIRVWDISNSSIILE-----VHSPERCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLL 219 (821)
Q Consensus 147 ~~~l~t~-~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~s~~~~~~s~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~ 219 (821)
+++++++ ..++.|.+||+.+...+.. ...+.......+.| ++++.+++++.. ++.|.+|++....
T Consensus 137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~---~pdg~~lyv~~~~~~~v~v~~~~~~~----- 208 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF---HPNQQYAYCVNELNSSVDVWQLKDPH----- 208 (330)
T ss_pred CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE---CCCCCEEEEEecCCCEEEEEEEeCCC-----
Confidence 9888655 4579999999986432211 11111122234455 578888888776 8999999997110
Q ss_pred CCCCCcccCCCCCCcceeeecccccceeeEEEEec------CCCcEEEEEEcCCCCEEEEEe-CCCeEEEEecccCcccC
Q 003423 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG------HEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKD 292 (821)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~I~~l~~s~~~~~l~s~s-~Dg~i~iwd~~~~~~~~ 292 (821)
.....+..+.. +......+.++|++++|+++. .++.|.+|++.....
T Consensus 209 ------------------------~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~-- 262 (330)
T PRK11028 209 ------------------------GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS-- 262 (330)
T ss_pred ------------------------CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC--
Confidence 01122222221 112334689999999988875 478999999965432
Q ss_pred CCCceeeeceEEeccc---eeEEEEEEc--CCEEEEEeC-CCeEEEEcC
Q 003423 293 SDSIEEVGSSVLYGHN---ARVWDCCLT--DSFIITAGE-DCTCRVWGS 335 (821)
Q Consensus 293 ~~~~~~~~~~~~~~h~---~~i~~v~~~--~~~l~s~~~-dg~i~iwd~ 335 (821)
. ..+.++. ...+.+.++ +++|+++.. +++|.+|++
T Consensus 263 ---~-----~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 263 ---V-----LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred ---e-----EEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 1 1122221 234567777 577877665 899999987
No 207
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=2.1e-11 Score=114.80 Aligned_cols=235 Identities=13% Similarity=0.160 Sum_probs=159.7
Q ss_pred CCCcceeeccce------eeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECC-CCeeeeEEEeeccccEEeEEeccc
Q 003423 4 KDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLE-AGTLIRPFQVFHGIRLHGISCNFI 76 (821)
Q Consensus 4 ~~i~~w~~~~~~------~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~-t~~~~~~~~~~~~~~i~~i~~~~~ 76 (821)
+++-|||=.... ...+|.++.+. ++ .+++...+.|.||... .-+.++.+..-. +..|++..
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~--r~------riVvvl~~~I~VytF~~n~k~l~~~et~~--NPkGlC~~-- 142 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLR--RD------RIVVVLENKIYVYTFPDNPKLLHVIETRS--NPKGLCSL-- 142 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEc--CC------eEEEEecCeEEEEEcCCChhheeeeeccc--CCCceEee--
Confidence 568899944333 55789999998 55 8888889999999998 556666665422 12222221
Q ss_pred cCCCCCCccceeeEEEEEc--CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEE
Q 003423 77 NCTEGSVSTRVTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (821)
Q Consensus 77 ~~~~~~~~~~~~~~l~~~g--~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~ 154 (821)
++. .+ ..+++.-| -|+|+|-++.... ...-..++.|...|.|++.+- +|..+|||+
T Consensus 143 -~~~-~~----k~~LafPg~k~GqvQi~dL~~~~-------------~~~p~~I~AH~s~Iacv~Ln~---~Gt~vATaS 200 (346)
T KOG2111|consen 143 -CPT-SN----KSLLAFPGFKTGQVQIVDLASTK-------------PNAPSIINAHDSDIACVALNL---QGTLVATAS 200 (346)
T ss_pred -cCC-CC----ceEEEcCCCccceEEEEEhhhcC-------------cCCceEEEcccCceeEEEEcC---CccEEEEec
Confidence 011 11 23555545 4899999987543 112466789999999999999 999999999
Q ss_pred CCCc-EEEEEccCCceeEEEc-cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCC
Q 003423 155 SDNS-IRVWDISNSSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (821)
Q Consensus 155 ~d~~-i~iwd~~~~~~~~~~~-~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 232 (821)
..|+ |||||..+|+.+++++ +.....+|+++| +++..+||+++..|++.|+.+.......... ++..
T Consensus 201 tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF---Sp~~s~LavsSdKgTlHiF~l~~~~~~~~~~--------SSl~ 269 (346)
T KOG2111|consen 201 TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF---SPNSSWLAVSSDKGTLHIFSLRDTENTEDES--------SSLS 269 (346)
T ss_pred cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe---CCCccEEEEEcCCCeEEEEEeecCCCCcccc--------cccc
Confidence 9998 7999999999999987 445677999998 7999999999999999999998432111100 0000
Q ss_pred Ccc--eeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 003423 233 DFK--CFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (821)
Q Consensus 233 ~~~--~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~ 286 (821)
... .-+..+ +...+..+.-..+...-++|-.+.+.++..+.||+-.-+...
T Consensus 270 ~~~~~lpky~~---S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 270 FKRLVLPKYFS---SEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred ccccccchhcc---cceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 000 001111 122333444456777888898876777777888877655444
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.48 E-value=1.7e-11 Score=115.50 Aligned_cols=213 Identities=12% Similarity=0.087 Sum_probs=150.5
Q ss_pred EEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEE
Q 003423 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF 260 (821)
Q Consensus 181 ~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 260 (821)
+++.++ ++|...+|.+....+|.||...+ ....++.+++..|...|+
T Consensus 13 itchAw---n~drt~iAv~~~~~evhiy~~~~------------------------------~~~w~~~htls~Hd~~vt 59 (361)
T KOG1523|consen 13 ITCHAW---NSDRTQIAVSPNNHEVHIYSMLG------------------------------ADLWEPAHTLSEHDKIVT 59 (361)
T ss_pred eeeeee---cCCCceEEeccCCceEEEEEecC------------------------------CCCceeceehhhhCccee
Confidence 444444 68999999999999999999871 113578889999999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCc
Q 003423 261 RIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGK 338 (821)
Q Consensus 261 ~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~ 338 (821)
+|.|+|..+.|++|+.|+.-.+|....+.. -++. ..+.-+....+++.|+ .+.|++|+.-..|.+|-++++
T Consensus 60 gvdWap~snrIvtcs~drnayVw~~~~~~~-----Wkpt--lvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~E 132 (361)
T KOG1523|consen 60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGT-----WKPT--LVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQE 132 (361)
T ss_pred EEeecCCCCceeEccCCCCccccccCCCCe-----eccc--eeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecc
Confidence 999999999999999999999999854432 2322 5778889999999999 489999999999999988544
Q ss_pred eeeEee-----cccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCccccee
Q 003423 339 QLKMIK-----EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIR 413 (821)
Q Consensus 339 ~~~~~~-----~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (821)
.---.. .+.. .|++++|+|++-+|++|+.|+..+++..--+.+.. . +....+....|- ...+.
T Consensus 133 NdWWVsKhikkPirS-tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vde---k-------pap~pWgsk~PF-G~lm~ 200 (361)
T KOG1523|consen 133 NDWWVSKHIKKPIRS-TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDE---K-------PAPTPWGSKMPF-GQLMS 200 (361)
T ss_pred cceehhhhhCCcccc-ceeeeeccCCcceecccccCcceeEEEEeeecccc---C-------CCCCCCccCCcH-HHHHH
Confidence 322122 2233 58999999999999999999999999862111111 1 000011101010 01122
Q ss_pred ccCCCCcceEEEEeecCCeEEEEec-CCcEEEE
Q 003423 414 LTDSKSEYVRCLHLTSEDTLYIATN-HGYLYHT 445 (821)
Q Consensus 414 ~~~~~~~~i~~l~f~~~~~~l~~~~-~g~~~~~ 445 (821)
......+.+..+.|+|+|..++-.. ++.+...
T Consensus 201 E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 201 EASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred hhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 2335567899999999987666543 4444433
No 209
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=5e-13 Score=132.40 Aligned_cols=312 Identities=13% Similarity=0.096 Sum_probs=216.5
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
|.|.|..+.|. .. +..|++|+ |-.|.+||+.+++....+..-+..+|..-.|-|. +.+ ..++..+
T Consensus 141 H~GcVntV~FN--~~----Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~----s~d----~ti~~~s 206 (559)
T KOG1334|consen 141 HKGCVNTVHFN--QR----GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPF----SGD----RTIVTSS 206 (559)
T ss_pred CCCccceeeec--cc----CceeeccCccceEEeehhhccCcccccccccccchhhhhccCC----CCC----cCceecc
Confidence 88999999999 54 67888888 6899999999999888887666556766666644 344 2466667
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
.||++++=.+.... ..+-...+..|.+.|.-++.-|. ...-|.+++.|+.+.-.|+..+.....+.
T Consensus 207 ~dgqvr~s~i~~t~------------~~e~t~rl~~h~g~vhklav~p~--sp~~f~S~geD~~v~~~Dlr~~~pa~~~~ 272 (559)
T KOG1334|consen 207 RDGQVRVSEILETG------------YVENTKRLAPHEGPVHKLAVEPD--SPKPFLSCGEDAVVFHIDLRQDVPAEKFV 272 (559)
T ss_pred ccCceeeeeecccc------------ceecceecccccCccceeeecCC--CCCcccccccccceeeeeeccCCccceee
Confidence 79999998776432 12335667789999999999883 44678999999999999998765433222
Q ss_pred ---cCc--ceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeE
Q 003423 175 ---SPE--RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (821)
Q Consensus 175 ---~~~--~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (821)
... .-.+++++..+ .+...+++|+.|..+++||...-...+... .+..+ .+-
T Consensus 273 cr~~~~~~~v~L~~Ia~~P--~nt~~faVgG~dqf~RvYD~R~~~~e~~n~--~~~~f-------------------~p~ 329 (559)
T KOG1334|consen 273 CREADEKERVGLYTIAVDP--RNTNEFAVGGSDQFARVYDQRRIDKEENNG--VLDKF-------------------CPH 329 (559)
T ss_pred eeccCCccceeeeeEecCC--CCccccccCChhhhhhhhcccchhhccccc--hhhhc-------------------CCc
Confidence 122 23567776643 345689999999999999987221111100 01111 111
Q ss_pred EEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCce---eeeceEEeccce--eEEEEEEcC---CEE
Q 003423 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE---EVGSSVLYGHNA--RVWDCCLTD---SFI 321 (821)
Q Consensus 250 ~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~h~~--~i~~v~~~~---~~l 321 (821)
+......-.|+|++|+.++.-|.+...|-.|.++.-..+.-..+.+.. ...+..+.||.. .|.++-|-+ .++
T Consensus 330 hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyV 409 (559)
T KOG1334|consen 330 HLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYV 409 (559)
T ss_pred cccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceE
Confidence 111123346999999977766655666778888843332221111111 112235778864 477787763 799
Q ss_pred EEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 322 ITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 322 ~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
++|+.-|-|.+|+- .++.++-+.+... -|.||.-+|--..||+.|-|..|+||...+
T Consensus 410 vSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 410 VSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred EecCccceEEEEecchhHHHHHhhcccc-eEeccCCCCCCchhhccCCccceeeecCCc
Confidence 99999999999998 6778888877766 689999999999999999999999998843
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.48 E-value=1.4e-11 Score=135.45 Aligned_cols=269 Identities=16% Similarity=0.171 Sum_probs=173.1
Q ss_pred EECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeec
Q 003423 49 YDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL 128 (821)
Q Consensus 49 wd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (821)
|+. .|.+++.+..|+. .|..++.++.+ . +..+.++.||+|++|++..-.... ...+...++
T Consensus 1034 W~p-~G~lVAhL~Ehs~-~v~k~a~s~~~----~-----s~FvsgS~DGtVKvW~~~k~~~~~--------~s~rS~lty 1094 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSS-AVIKLAVSSEH----T-----SLFVSGSDDGTVKVWNLRKLEGEG--------GSARSELTY 1094 (1431)
T ss_pred CCc-cceEeehhhhccc-cccceeecCCC----C-----ceEEEecCCceEEEeeehhhhcCc--------ceeeeeEEE
Confidence 443 4788888887666 45577766442 1 244445568999999987432110 112333444
Q ss_pred cCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce-------eEEEccCcceeEEEEeeccCCccCeEEEEEee
Q 003423 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-------ILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (821)
Q Consensus 129 ~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (821)
..-...+.++...+ .++.+|.++.||.|++.++..... .+.........+.+|.-.........|+.++.
T Consensus 1095 s~~~sr~~~vt~~~---~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~ 1171 (1431)
T KOG1240|consen 1095 SPEGSRVEKVTMCG---NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATD 1171 (1431)
T ss_pred eccCCceEEEEecc---CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEe
Confidence 44567889999988 999999999999999999876211 11112222233445533222222348888999
Q ss_pred CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE--ecCCCcEEEEEEcCCCCEEEEEeCCCe
Q 003423 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL--VGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (821)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I~~l~~s~~~~~l~s~s~Dg~ 279 (821)
-+.|..||.. ......++ .-..|.|++++.+|.+.+++.|..-|.
T Consensus 1172 ~~~iv~~D~r---------------------------------~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~ 1218 (1431)
T KOG1240|consen 1172 LSRIVSWDTR---------------------------------MRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQ 1218 (1431)
T ss_pred ccceEEecch---------------------------------hhhhHHhhhcCccccceeEEEecCCceEEEEecCCce
Confidence 9999999998 22222222 234588999999999999999999999
Q ss_pred EEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---C--CEEEEEeC--CCeEEEEcC-CCceeeEeecccCC--
Q 003423 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---D--SFIITAGE--DCTCRVWGS-DGKQLKMIKEHIGR-- 349 (821)
Q Consensus 280 i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~--~~l~s~~~--dg~i~iwd~-~~~~~~~~~~h~~~-- 349 (821)
+.+||++-+.. +. ....++..+|..+... + ...++++. .+.+.+|++ .|.+...+-...+.
T Consensus 1219 l~lWDLRF~~~-----i~----sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ 1289 (1431)
T KOG1240|consen 1219 LVLWDLRFRVP-----IL----SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPI 1289 (1431)
T ss_pred EEEEEeecCce-----ee----cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcc
Confidence 99999997654 21 2344455666666554 3 55565554 688999999 55444433322110
Q ss_pred ----------------CeEEEEEecCCCEEEEEeCCCcEEEEEcCCcC
Q 003423 350 ----------------GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL 381 (821)
Q Consensus 350 ----------------~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~ 381 (821)
......+...+..+++|+.|..|+.||....+
T Consensus 1290 ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1290 LSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred hhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 11122334446789999999999999996543
No 211
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.2e-10 Score=121.94 Aligned_cols=610 Identities=12% Similarity=0.062 Sum_probs=307.8
Q ss_pred eEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc--CC
Q 003423 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG--EK 97 (821)
Q Consensus 20 Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g--~~ 97 (821)
-.|+.++ |. .++|-|++..|.|.|..+-+.+..++.|+. .|..+.|.|...+..--+.....++++.+ .|
T Consensus 18 ~~A~Dw~--~~-----GLiAygshslV~VVDs~s~q~iqsie~h~s-~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 18 RNAADWS--PS-----GLIAYGSHSLVSVVDSRSLQLIQSIELHQS-AVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred ccccccC--cc-----ceEEEecCceEEEEehhhhhhhhccccCcc-ceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3466666 54 699999999999999999999999998775 79999999875443322211012444444 49
Q ss_pred eEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCC-CEEEEEECCCcEEEEEccCCceeEEEccC
Q 003423 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (821)
Q Consensus 98 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~ 176 (821)
.|.+||..... .+..+..|.++|.+++|-|..++. ..|++-...+++.+|+..+|+.+-+....
T Consensus 90 rIil~d~~~~s---------------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys 154 (1062)
T KOG1912|consen 90 RIILVDFVLAS---------------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS 154 (1062)
T ss_pred cEEEEEehhhh---------------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC
Confidence 99999988642 455677889999999999854444 56666666789999999999988766544
Q ss_pred cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCC
Q 003423 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (821)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 256 (821)
+. ++.+..+.++++ ..+..-+..|.+.+-+.-.... ++ . .++.++.-..|.
T Consensus 155 ~~-iLs~f~~DPfd~--rh~~~l~s~g~vl~~~~l~~se---p~-----------~------------pgk~~qI~sd~S 205 (1062)
T KOG1912|consen 155 HE-ILSCFRVDPFDS--RHFCVLGSKGFVLSCKDLGLSE---PD-----------V------------PGKEFQITSDHS 205 (1062)
T ss_pred Cc-ceeeeeeCCCCc--ceEEEEccCceEEEEeccCCCC---CC-----------C------------CceeEEEecCcc
Confidence 43 455566666543 3333344557777666541100 00 0 001111111111
Q ss_pred C----------------c---------EEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeE
Q 003423 257 G----------------S---------IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (821)
Q Consensus 257 ~----------------~---------I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i 311 (821)
. . ...++|+|.-+.++-....+.+.++|++-... +..+ .+.....++
T Consensus 206 dl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~-----l~vv---pier~~akf 277 (1062)
T KOG1912|consen 206 DLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECC-----LAVV---PIERGGAKF 277 (1062)
T ss_pred chhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhce-----eEEE---EeccCCcce
Confidence 0 0 11256777655444445668899999886544 2211 122222233
Q ss_pred EEEEEc--CCEEEEEeCCCeEEEEcCCC-----------------ceeeEeecccCCCeEEEEEecC-CCEEEEEeCCCc
Q 003423 312 WDCCLT--DSFIITAGEDCTCRVWGSDG-----------------KQLKMIKEHIGRGIWRCLYDSL-SSLLVTAGFDSA 371 (821)
Q Consensus 312 ~~v~~~--~~~l~s~~~dg~i~iwd~~~-----------------~~~~~~~~h~~~~i~~l~~~~~-~~~l~tg~~dg~ 371 (821)
.++-.. .+.|++...||.+.+|--.. .....+..-....+...+..|. ...++.--.+|.
T Consensus 278 v~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~ 357 (1062)
T KOG1912|consen 278 VDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGD 357 (1062)
T ss_pred eEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcch
Confidence 333322 37899999999999997511 1111111111101222333444 344444556788
Q ss_pred EEEEEcCCcCCCc-ccCCcc--ccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEec
Q 003423 372 IKVHQFQAFLPGS-LESHPE--AKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLC 448 (821)
Q Consensus 372 I~iwd~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~ 448 (821)
..+|++.+..+.. ...... ...|.....-+.+ ....-+..+.+|. -..|.... +.-
T Consensus 358 ~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v----------------~k~~l~~LS~dg~----h~sGs~~~-~~~ 416 (1062)
T KOG1912|consen 358 STFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLV----------------GKTSLISLSDDGS----HSSGSTCV-RMR 416 (1062)
T ss_pred hHHHhhhcCCcCcccccccccccccccccCceeeh----------------hhccccchhhcCC----CCCCceee-ecc
Confidence 8999986422111 000000 0000000000000 0000111111220 00011000 000
Q ss_pred CCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCC------CCcceeEEeeccCccc
Q 003423 449 DMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVH------TPQLSFTFTWSAGIER 522 (821)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~------~~~~~~~~~~~~~~~~ 522 (821)
.... ..-....++. ........++|+|...|+|.++|+.++.. +...+..+.|....
T Consensus 417 p~p~--------------~t~~~~~p~~-n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s-- 479 (1062)
T KOG1912|consen 417 PMPE--------------LTKVENDPGG-NTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS-- 479 (1062)
T ss_pred cCcc--------------cceeecCCCC-CccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccce--
Confidence 0000 0000001110 00011236899999999999999988654 33344444444311
Q ss_pred eeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCC
Q 003423 523 QLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRG 602 (821)
Q Consensus 523 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG 602 (821)
.+. .++.....=++++..+.+.+=|++++... ........-..+|+.+..|..++||+...+|.
T Consensus 480 slv----Sfsys~~n~~sg~vrN~l~vtdLrtGlsk------------~fR~l~~~despI~~irvS~~~~yLai~Fr~~ 543 (1062)
T KOG1912|consen 480 SLV----SFSYSHVNSASGGVRNDLVVTDLRTGLSK------------RFRGLQKPDESPIRAIRVSSSGRYLAILFRRE 543 (1062)
T ss_pred eEE----EeeeccccccccceeeeEEEEEccccccc------------ccccCCCCCcCcceeeeecccCceEEEEeccc
Confidence 111 11111111123444456777777776310 00111234467899999999999999999999
Q ss_pred cEEEEecCcccccccccccccccCcccccccccCCcceEEEEEE-ecC-------------CCceEEEEecCCCeEEEEE
Q 003423 603 NLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVA-KLR-------------SNQTEIRSTGGDGCICYLE 668 (821)
Q Consensus 603 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~-~~~-------------~~~~~l~t~g~Dg~i~iw~ 668 (821)
-+.+||+..-. ++... .-.-..+|.+.|. |.- -.....++.+ +-.+++.
T Consensus 544 plEiwd~kt~~-------------~lr~m--S~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds--~es~~~~ 606 (1062)
T KOG1912|consen 544 PLEIWDLKTLR-------------MLRLM--SLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDS--VESRIYH 606 (1062)
T ss_pred chHHHhhccch-------------HHHHH--hhcCCcEEEEeecccCCCCcccccchhhhhhhhceeeecc--ccchhee
Confidence 99999985311 11111 1112235666665 110 0012233333 2334444
Q ss_pred eecCCceeeeeeeeeeeeeeeeeeec-cCCCccCCCCCeEEEeeecccEEEEECccccEEEEEeeCCCCccceeecCCCC
Q 003423 669 YDKDRESLEFIGMKQVKELSLIQSVS-AENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVP 747 (821)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~g~~~~~~~vW~~~~~~~l~~i~cgg~~r~~~~~~~~~~ 747 (821)
+...... ..-+.|.. ...+++. ...+..| .+..++.|-.++++++||.....-.- +-----||.|.....+.|
T Consensus 607 ~~~~a~~-~sdgsq~~---~a~esfafal~~mAw-k~d~lv~GD~~GNl~~WDlg~R~SRg-~~d~p~~ra~~l~~~~ip 680 (1062)
T KOG1912|consen 607 ITLSALV-VSDGSQVN---TAWESFAFALCAMAW-KDDILVVGDVEGNLVVWDLGRRQSRG-VRDSPDPRAHSLTFPQIP 680 (1062)
T ss_pred hhhhhhh-hccccchh---hHHHHHHHHHHhhhc-cCCeeEeecccCceeEEecccccccC-ccCCCCchhhheecccCC
Confidence 3211100 00011100 0001110 0001112 35669999999999999964431111 111135788888877677
Q ss_pred CcceeEEEEeeceEEEEccc
Q 003423 748 EIKNCFAYVKANQLWRLRDL 767 (821)
Q Consensus 748 ~~~~~~~~~~~~~l~~~~~~ 767 (821)
++. ..+......+-+++.+
T Consensus 681 G~~-~~lvl~~d~~~lwdtk 699 (1062)
T KOG1912|consen 681 GDH-TTLVLELDWLPLWDTK 699 (1062)
T ss_pred CCc-eEEEEecCcceecccc
Confidence 544 3444444456666644
No 212
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=6.1e-13 Score=130.02 Aligned_cols=178 Identities=16% Similarity=0.283 Sum_probs=125.7
Q ss_pred CccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCC
Q 003423 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS 269 (821)
Q Consensus 190 s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~ 269 (821)
+.++..|++|+.||.++||++. +...+.....|.+.|.++.|+|||+
T Consensus 153 ~~~gs~latgg~dg~lRv~~~P---------------------------------s~~t~l~e~~~~~eV~DL~FS~dgk 199 (398)
T KOG0771|consen 153 NGDGSKLATGGTDGTLRVWEWP---------------------------------SMLTILEEIAHHAEVKDLDFSPDGK 199 (398)
T ss_pred cCCCCEeeeccccceEEEEecC---------------------------------cchhhhhhHhhcCccccceeCCCCc
Confidence 5788999999999999999976 4455556678999999999999999
Q ss_pred EEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CC-----EEEE-EeCCCeEEEEcC---CC--
Q 003423 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DS-----FIIT-AGEDCTCRVWGS---DG-- 337 (821)
Q Consensus 270 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~-----~l~s-~~~dg~i~iwd~---~~-- 337 (821)
.|++.+.| ..+||+..++.. +... .-...+-....+.|. ++ ++++ ...-+.++.|++ .+
T Consensus 200 ~lasig~d-~~~VW~~~~g~~-----~a~~---t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~ 270 (398)
T KOG0771|consen 200 FLASIGAD-SARVWSVNTGAA-----LARK---TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN 270 (398)
T ss_pred EEEEecCC-ceEEEEeccCch-----hhhc---CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc
Confidence 99999999 999999999854 2211 112223334556666 22 2222 233456666665 22
Q ss_pred --ceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceecc
Q 003423 338 --KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLT 415 (821)
Q Consensus 338 --~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (821)
+..+.+..+. .|.+++++++|++++.|+.||.|-+++...-.. .....
T Consensus 271 ~l~~~~~~~~~~--siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~----------------------------~~~vk 320 (398)
T KOG0771|consen 271 FLRLRKKIKRFK--SISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR----------------------------LQYVK 320 (398)
T ss_pred ccchhhhhhccC--cceeEEEcCCCcEEEEeccCCcEEEEEeceeee----------------------------eEeeh
Confidence 2222233333 599999999999999999999999999843100 01122
Q ss_pred CCCCcceEEEEeecCCeEEEEecC
Q 003423 416 DSKSEYVRCLHLTSEDTLYIATNH 439 (821)
Q Consensus 416 ~~~~~~i~~l~f~~~~~~l~~~~~ 439 (821)
..|...|+.+.|+|+.+.++..+.
T Consensus 321 ~aH~~~VT~ltF~Pdsr~~~svSs 344 (398)
T KOG0771|consen 321 EAHLGFVTGLTFSPDSRYLASVSS 344 (398)
T ss_pred hhheeeeeeEEEcCCcCccccccc
Confidence 456678999999999877776543
No 213
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.2e-10 Score=121.93 Aligned_cols=548 Identities=14% Similarity=0.088 Sum_probs=273.7
Q ss_pred eeeeeEEEEEeccCCCC---C--CcceEEeec--CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCcccee
Q 003423 16 YLGEISALCFVHLPSHL---S--SLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVT 88 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~---~--~~~~l~~g~--~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~ 88 (821)
|...|+.+.|...|-++ + ...+++|.. .|.|.+||...+..+..++. +..++..++|-+.. +++. +
T Consensus 54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~-~~~~~qdl~W~~~r----d~Sr--d 126 (1062)
T KOG1912|consen 54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSH-SNDSVQDLCWVPAR----DDSR--D 126 (1062)
T ss_pred CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcC-CCcchhheeeeecc----Ccch--h
Confidence 77889999998222111 1 134555555 49999999999988888875 44478899988553 4433 5
Q ss_pred eEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc
Q 003423 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 89 ~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
.+++..|...+.+|+..++. .............|+.+.|. +.+-+..-+..|.+.+-+.....
T Consensus 127 ~LlaIh~ss~lvLwntdtG~---------------k~Wk~~ys~~iLs~f~~DPf--d~rh~~~l~s~g~vl~~~~l~~s 189 (1062)
T KOG1912|consen 127 VLLAIHGSSTLVLWNTDTGE---------------KFWKYDYSHEILSCFRVDPF--DSRHFCVLGSKGFVLSCKDLGLS 189 (1062)
T ss_pred eeEEecCCcEEEEEEccCCc---------------eeeccccCCcceeeeeeCCC--CcceEEEEccCceEEEEeccCCC
Confidence 78888899999999988653 33333333345556888874 33333333345555555432110
Q ss_pred ----ee--EEEccCcc-----------------------eeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCC
Q 003423 169 ----II--LEVHSPER-----------------------CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLL 219 (821)
Q Consensus 169 ----~~--~~~~~~~~-----------------------~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 219 (821)
.. .++..++. -+.|++.| .++|.-.-+.-...-.++.|+|++
T Consensus 190 ep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f-af~p~~rn~lfi~~prellv~dle-------- 260 (1062)
T KOG1912|consen 190 EPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF-AFSPHWRNILFITFPRELLVFDLE-------- 260 (1062)
T ss_pred CCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh-hcChhhhceEEEEeccceEEEcch--------
Confidence 01 11111100 01222221 112332223333455778888887
Q ss_pred CCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEecccCcccCCCCce
Q 003423 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS--KLVSVSDDRSARIWEVRAEYWKDSDSIE 297 (821)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~--~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 297 (821)
-..++....-..+.+.-+.+-|+++ .|.+.-.||.+.+|--+........+..
T Consensus 261 -------------------------~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~ 315 (1062)
T KOG1912|consen 261 -------------------------YECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNA 315 (1062)
T ss_pred -------------------------hhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccch
Confidence 3344555544566666777888764 6899999999999976653221111000
Q ss_pred eeeceEEeccceeEEEEEE-------------c-CCEEEEEeCCCeEEEEcCC-Ccee----------------------
Q 003423 298 EVGSSVLYGHNARVWDCCL-------------T-DSFIITAGEDCTCRVWGSD-GKQL---------------------- 340 (821)
Q Consensus 298 ~~~~~~~~~h~~~i~~v~~-------------~-~~~l~s~~~dg~i~iwd~~-~~~~---------------------- 340 (821)
.. .+.....+.+++. + ++.++.--.+|...+|.+. |+.-
T Consensus 316 ~l----~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~ 391 (1062)
T KOG1912|consen 316 SL----SMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKL 391 (1062)
T ss_pred hh----ccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceee
Confidence 00 0000111112211 1 2223333345566666662 2100
Q ss_pred ---------eEeecccCCCeEEEEEe-----------cCC-------CEEEEEeCCCcEEEEEcCCcCCCcccCCccccc
Q 003423 341 ---------KMIKEHIGRGIWRCLYD-----------SLS-------SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKE 393 (821)
Q Consensus 341 ---------~~~~~h~~~~i~~l~~~-----------~~~-------~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~ 393 (821)
....+|.. +.++.... |.+ .++|.|...|+|.++|+.+..+..
T Consensus 392 v~k~~l~~LS~dg~h~s-Gs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~--------- 461 (1062)
T KOG1912|consen 392 VGKTSLISLSDDGSHSS-GSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAA--------- 461 (1062)
T ss_pred hhhccccchhhcCCCCC-CceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhh---------
Confidence 00012222 23332222 222 368889999999999996532211
Q ss_pred cCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEe-------cCCcEEEEEecCCCcceeeE--eeeccCC
Q 003423 394 FNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-------NHGYLYHTKLCDMDSVNWNK--ILQVSEG 464 (821)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~-------~~g~~~~~~i~~~~~~~~~~--~~~~~~~ 464 (821)
.+..|...|+++.|.....++..+ ..|......+.+..++.-.. -.+.+++
T Consensus 462 --------------------~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~de 521 (1062)
T KOG1912|consen 462 --------------------SFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDE 521 (1062)
T ss_pred --------------------hhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCc
Confidence 122334557777777655444332 11222222333333332122 2245567
Q ss_pred cceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCC------CCcceeEEeec-cCccceeeeeEEe-ecCCCe
Q 003423 465 MPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVH------TPQLSFTFTWS-AGIERQLLGTYWC-KSLGHR 536 (821)
Q Consensus 465 ~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~ 536 (821)
.+|..+..+..+ .++++.-.+.-+.+|++.+..+ .--.+..+.|+ +..++.-..-... .+...+
T Consensus 522 spI~~irvS~~~--------~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n 593 (1062)
T KOG1912|consen 522 SPIRAIRVSSSG--------RYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSEN 593 (1062)
T ss_pred CcceeeeecccC--------ceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhc
Confidence 788887776544 8999999999999999876443 11124456666 2221100000000 001123
Q ss_pred EEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccc
Q 003423 537 FIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLND 616 (821)
Q Consensus 537 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~ 616 (821)
..+..+.+ .+++.+......... ..+...-. ..+.-.+..++|- +..|+.|+.+|++.+||+.....-.
T Consensus 594 ~vv~ds~e--s~~~~~~~~a~~~sd---gsq~~~a~----esfafal~~mAwk--~d~lv~GD~~GNl~~WDlg~R~SRg 662 (1062)
T KOG1912|consen 594 LVVLDSVE--SRIYHITLSALVVSD---GSQVNTAW----ESFAFALCAMAWK--DDILVVGDVEGNLVVWDLGRRQSRG 662 (1062)
T ss_pred eeeecccc--chheehhhhhhhhcc---ccchhhHH----HHHHHHHHhhhcc--CCeeEeecccCceeEEecccccccC
Confidence 33333322 333333222111110 00000000 1112223346664 6799999999999999986532100
Q ss_pred cc-cccccccCccc-ccccccCCcceEEEEEEec--CCCceEEEEe-cCCCeEEEEEeecCCce
Q 003423 617 KS-VALHVEVSPLN-YFKGAHGISTVSTLSVAKL--RSNQTEIRST-GGDGCICYLEYDKDRES 675 (821)
Q Consensus 617 ~~-~~~~~~~~~~~-~~~~~h~~~~Vt~i~~~~~--~~~~~~l~t~-g~Dg~i~iw~~~~~~~~ 675 (821)
-- ...+.....+. ...+.| +-.|-...|.|- ..+..++.+. |+|++.|+-+++-.+..
T Consensus 663 ~~d~p~~ra~~l~~~~ipG~~-~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~ 725 (1062)
T KOG1912|consen 663 VRDSPDPRAHSLTFPQIPGDH-TTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKS 725 (1062)
T ss_pred ccCCCCchhhheecccCCCCc-eEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccC
Confidence 00 00000111011 112222 333444444443 1233444454 99999999999765443
No 214
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=6.7e-10 Score=115.31 Aligned_cols=470 Identities=13% Similarity=0.144 Sum_probs=266.0
Q ss_pred eeccccEEeEEeccccCCCCCCccceeeEEEEEc-CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEE
Q 003423 62 VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF 140 (821)
Q Consensus 62 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~ 140 (821)
.+.....+++.|... ..+++++| +|.+++..+.+.........-...-++..-+++.||+..|.-+.|
T Consensus 11 iPnnvkL~c~~WNke-----------~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTW 79 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKE-----------SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTW 79 (1189)
T ss_pred CCCCceEEEEEEccc-----------CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEe
Confidence 345567889999854 24777766 799999999876432221110111246677899999999999999
Q ss_pred eecCCCCCEEEEEECCCcEEEEEccCCceeEEE-ccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCC
Q 003423 141 LKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV-HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLL 219 (821)
Q Consensus 141 ~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 219 (821)
+. +.+.|-|...+|.|.+|-+-.+.-..++ ....++.+.|+.+ +.||..|+....||.|.|=.++++++
T Consensus 80 Ne---~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW---n~dG~kIcIvYeDGavIVGsvdGNRI---- 149 (1189)
T KOG2041|consen 80 NE---NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW---NLDGTKICIVYEDGAVIVGSVDGNRI---- 149 (1189)
T ss_pred cc---ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEE---cCCCcEEEEEEccCCEEEEeecccee----
Confidence 98 8888999999999999999887654443 3455677888877 57899999999999999988773221
Q ss_pred CCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCcee-
Q 003423 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEE- 298 (821)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~- 298 (821)
| + ..++|. ....+.|++|.+.++.+-..|.+.++|.+..-.. .....+
T Consensus 150 --------------------w-----g---KeLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~-Kl~~~c~ 198 (1189)
T KOG2041|consen 150 --------------------W-----G---KELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFER-KLEKDCE 198 (1189)
T ss_pred --------------------c-----c---hhcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHH-hhhhceE
Confidence 0 0 111111 1236889999998888888899999998753210 000011
Q ss_pred ee-ceEEeccceeEEEEEEc----------CCEEEEEeCCCeEEEEcCC--CceeeEeecccCCCeEEEEEecCCCEEEE
Q 003423 299 VG-SSVLYGHNARVWDCCLT----------DSFIITAGEDCTCRVWGSD--GKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (821)
Q Consensus 299 ~~-~~~~~~h~~~i~~v~~~----------~~~l~s~~~dg~i~iwd~~--~~~~~~~~~h~~~~i~~l~~~~~~~~l~t 365 (821)
+. ...+.....+|-.+.|. ...++.+-+.|.+++-... ..++-.-.+ - .+..+.|+++|..|+.
T Consensus 199 Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m-~~vgakWnh~G~vLAv 275 (1189)
T KOG2041|consen 199 VNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--M-KIVGAKWNHNGAVLAV 275 (1189)
T ss_pred EeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--c-EeecceecCCCcEEEE
Confidence 10 01122223346666664 1589999999999988763 233222222 2 3788999999999999
Q ss_pred EeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEE
Q 003423 366 AGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (821)
Q Consensus 366 g~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~ 445 (821)
+|.+..-.- +.... ...+ .......+..++..+..|+.++|-..|-.++.+.++.++..
T Consensus 276 cG~~~da~~-~~d~n----------------~v~F----ysp~G~i~gtlkvpg~~It~lsWEg~gLriA~Avdsfiyfa 334 (1189)
T KOG2041|consen 276 CGNDSDADE-PTDSN----------------KVHF----YSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFA 334 (1189)
T ss_pred ccCcccccC-ccccc----------------eEEE----eccchhheEEEecCCceeeeeEEcCCceEEEEEecceEEEE
Confidence 987642100 00000 0000 01112223344444567999999988888888888888877
Q ss_pred EecCCCcceeeEeee------ccCCcceEE---EeccCCCCCC----------CCCCCcEEEEecCCccEEEEEecCC-C
Q 003423 446 KLCDMDSVNWNKILQ------VSEGMPIIC---MDLLSNEPKY----------PCGIDDWVALGDGKGNMTIVRVVGD-V 505 (821)
Q Consensus 446 ~i~~~~~~~~~~~~~------~~~~~~i~~---~~~~~~~~~~----------s~~~~~~l~~g~~~g~i~i~~~~~~-~ 505 (821)
++.+ ..+|..+.. ...+.+.++ ++...+.... +....-.++.-..+|.+.-++.-.. .
T Consensus 335 nIRP--~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~ 412 (1189)
T KOG2041|consen 335 NIRP--EYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRS 412 (1189)
T ss_pred eecc--cceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhhhccc
Confidence 7654 233432211 112222222 2222222110 0111122233333444433311000 0
Q ss_pred CCCcceeEEeeccCccceeeeeEEeec-CCCeEEEEECCCCcEEEeeecCCCCcccccC-----------------Cccc
Q 003423 506 HTPQLSFTFTWSAGIERQLLGTYWCKS-LGHRFIFTADPKGRLKLWQLCDPFSSVCYES-----------------SKTN 567 (821)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------------~~~~ 567 (821)
......+.-........+...+..++. -++.+++.++.+ .+.+|.....+....... ....
T Consensus 413 ~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~ 491 (1189)
T KOG2041|consen 413 RVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDR 491 (1189)
T ss_pred ceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhc
Confidence 000000000001111111111111111 245677777766 477787665433221111 0111
Q ss_pred eeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcc
Q 003423 568 NVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (821)
Q Consensus 568 ~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~ 612 (821)
.++....-..+-..+|.+++.| +++|+.|-..|.|+-|.+.+.
T Consensus 492 ~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv 534 (1189)
T KOG2041|consen 492 TLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNV 534 (1189)
T ss_pred eeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecce
Confidence 2222211125667789888887 789999999999999998753
No 215
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.42 E-value=2.1e-10 Score=108.36 Aligned_cols=125 Identities=11% Similarity=0.126 Sum_probs=87.9
Q ss_pred EEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEcc--CcceeEEEEeeccCCccCe-EEEEEeeCCEEEEEEcccCC
Q 003423 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS--PERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEH 214 (821)
Q Consensus 138 ~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~s~~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~ 214 (821)
++||| +|+++|+++.- .+.|-|..+-+..+-+.. ...-+.|+ .|.. .|.+...++.|.+|++.
T Consensus 14 c~fSp---~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~-------ads~~ilC~~yk~~~vqvwsl~--- 79 (447)
T KOG4497|consen 14 CSFSP---CGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWK-------ADSCHILCVAYKDPKVQVWSLV--- 79 (447)
T ss_pred eeECC---CCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeee-------ccceeeeeeeeccceEEEEEee---
Confidence 67899 99999999855 777888777654332221 11223444 2443 45667789999999998
Q ss_pred cccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEecccCcccCC
Q 003423 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDS 293 (821)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~ 293 (821)
+.+-...+..-...+.+++|||||+ .|.+...|-.|.+|.+.+.+.
T Consensus 80 ------------------------------Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~--- 126 (447)
T KOG4497|consen 80 ------------------------------QPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG--- 126 (447)
T ss_pred ------------------------------cceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee---
Confidence 5555666777778899999999995 567778899999999998765
Q ss_pred CCceeeeceEEeccceeEEEEEEc
Q 003423 294 DSIEEVGSSVLYGHNARVWDCCLT 317 (821)
Q Consensus 294 ~~~~~~~~~~~~~h~~~i~~v~~~ 317 (821)
..+.-.+..+..++|+
T Consensus 127 --------~~~~~pK~~~kg~~f~ 142 (447)
T KOG4497|consen 127 --------YLLPHPKTNVKGYAFH 142 (447)
T ss_pred --------EEecccccCceeEEEC
Confidence 2333334445667777
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.41 E-value=2.6e-11 Score=121.80 Aligned_cols=241 Identities=17% Similarity=0.162 Sum_probs=154.2
Q ss_pred CcceEEeecCCeEEEEECCCCe----eeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCC
Q 003423 34 SLPFLLAGSGSQVLLYDLEAGT----LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELS 109 (821)
Q Consensus 34 ~~~~l~~g~~~~i~iwd~~t~~----~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~ 109 (821)
.+++|.-..+..+.+|+...+. ++.... +.+....+-.|... .+.++.--+++.++.+.+++++.....
T Consensus 134 ~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~-y~gt~P~cHdfn~~-----~a~~~g~dllIGf~tGqvq~idp~~~~- 206 (636)
T KOG2394|consen 134 KGDRLCFNVGRELYVYSYRGAADLSKPIDKRE-YKGTSPTCHDFNSF-----TATPKGLDLLIGFTTGQVQLIDPINFE- 206 (636)
T ss_pred CCCEEEEecCCeEEEEEccCcchhccchhhhc-ccCCCCceeccccc-----ccCCCCcceEEeeccCceEEecchhhH-
Confidence 4677777778889999987532 222211 22212222222211 111111247888888999998876422
Q ss_pred CCCCCCCccccccceeeecc--CCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeec
Q 003423 110 PNSQYQPETCVNLSLVQSLP--RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLW 187 (821)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~--~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~ 187 (821)
...+.... -.+..|+|+.|-|. +...++++-.+|.+.++|.. +........|++
T Consensus 207 ------------~sklfne~r~i~ktsvT~ikWvpg--~~~~Fl~a~~sGnlyly~~~-------~~~~~t~p~~~~--- 262 (636)
T KOG2394|consen 207 ------------VSKLFNEERLINKSSVTCIKWVPG--SDSLFLVAHASGNLYLYDKE-------IVCGATAPSYQA--- 262 (636)
T ss_pred ------------HHHhhhhcccccccceEEEEEEeC--CCceEEEEEecCceEEeecc-------ccccCCCCcccc---
Confidence 11111111 12368999999992 34556667789999999862 222222222221
Q ss_pred cCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCC
Q 003423 188 GDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC 267 (821)
Q Consensus 188 ~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 267 (821)
-+++..++.. .|.-. ....++..+.--++.|+..+|+||
T Consensus 263 --~k~~~~f~i~-------t~ksk--------------------------------~~rNPv~~w~~~~g~in~f~FS~D 301 (636)
T KOG2394|consen 263 --LKDGDQFAIL-------TSKSK--------------------------------KTRNPVARWHIGEGSINEFAFSPD 301 (636)
T ss_pred --cCCCCeeEEe-------eeecc--------------------------------ccCCccceeEeccccccceeEcCC
Confidence 1233333322 22221 122344444445669999999999
Q ss_pred CCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEee
Q 003423 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (821)
Q Consensus 268 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~ 344 (821)
|++||+.|.||.+||+|..+.+. . ..+...-+...|++|+ +++|++||+|--|.||.+ +.+.+..=+
T Consensus 302 G~~LA~VSqDGfLRvF~fdt~eL-----l-----g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 302 GKYLATVSQDGFLRIFDFDTQEL-----L-----GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred CceEEEEecCceEEEeeccHHHH-----H-----HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc
Confidence 99999999999999999998665 2 2333445678999999 589999999999999999 788888899
Q ss_pred cccCCCeEEEEEe
Q 003423 345 EHIGRGIWRCLYD 357 (821)
Q Consensus 345 ~h~~~~i~~l~~~ 357 (821)
+|.. .|..++|+
T Consensus 372 GHkS-WVs~VaFD 383 (636)
T KOG2394|consen 372 GHKS-WVSVVAFD 383 (636)
T ss_pred cccc-ceeeEeec
Confidence 9998 59999998
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.9e-11 Score=132.17 Aligned_cols=207 Identities=12% Similarity=0.090 Sum_probs=138.0
Q ss_pred CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECC---CcEEEEEccCCce--eE
Q 003423 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSI--IL 171 (821)
Q Consensus 97 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d---~~i~iwd~~~~~~--~~ 171 (821)
..|.+||.+.. ..+.+..|...+.+.+|+| +|+.|+.++.+ ..|.+||+.+++. +.
T Consensus 184 ~~i~i~d~dg~----------------~~~~lt~~~~~v~~p~wSP---DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~ 244 (429)
T PRK01742 184 YEVRVADYDGF----------------NQFIVNRSSQPLMSPAWSP---DGSKLAYVSFENKKSQLVVHDLRSGARKVVA 244 (429)
T ss_pred EEEEEECCCCC----------------CceEeccCCCccccceEcC---CCCEEEEEEecCCCcEEEEEeCCCCceEEEe
Confidence 57888886532 2345667888899999999 99999887643 3699999988754 33
Q ss_pred EEccCcceeEEEEeeccCCccCeEEEEE-eeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEE
Q 003423 172 EVHSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (821)
Q Consensus 172 ~~~~~~~~~~~s~~~~~~s~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (821)
.+..+... ..+ +||+..|+.+ +.+|.+.||.+.. ......
T Consensus 245 ~~~g~~~~----~~w---SPDG~~La~~~~~~g~~~Iy~~d~--------------------------------~~~~~~ 285 (429)
T PRK01742 245 SFRGHNGA----PAF---SPDGSRLAFASSKDGVLNIYVMGA--------------------------------NGGTPS 285 (429)
T ss_pred cCCCccCc----eeE---CCCCCEEEEEEecCCcEEEEEEEC--------------------------------CCCCeE
Confidence 33333322 333 5888888775 4688777775540 111234
Q ss_pred EEecCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC
Q 003423 251 RLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (821)
Q Consensus 251 ~~~~h~~~I~~l~~s~~~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d 327 (821)
.+..|...+....|+|||+.|+.++ .++..+||++..... . ....++.. ....|+ +++|+..+.+
T Consensus 286 ~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~-----~-----~~~l~~~~--~~~~~SpDG~~ia~~~~~ 353 (429)
T PRK01742 286 QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG-----G-----ASLVGGRG--YSAQISADGKTLVMINGD 353 (429)
T ss_pred eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC-----C-----eEEecCCC--CCccCCCCCCEEEEEcCC
Confidence 4566777888999999999876555 578899998765322 1 12223333 446677 4778777776
Q ss_pred CeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 328 g~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
+. .+||+ +++.. .+.... ...+.+|+|+|++|+.++.++.+.+|.+
T Consensus 354 ~i-~~~Dl~~g~~~-~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 354 NV-VKQDLTSGSTE-VLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CE-EEEECCCCCeE-EecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 54 45898 44433 332221 2456789999999999999998888876
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.40 E-value=9.3e-10 Score=103.93 Aligned_cols=232 Identities=12% Similarity=0.170 Sum_probs=151.7
Q ss_pred eEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeec-cccEEeEEeccccCCCCCCccceeeEEEEEcC--
Q 003423 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVALFGE-- 96 (821)
Q Consensus 20 Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~-~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~-- 96 (821)
...++|+ .| ..-++++.+.=.+||+.+--+...+-+... +..+..|-|..+ .+.+++|+
T Consensus 8 ~lsvs~N--QD----~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N------------~laLVGGg~~ 69 (346)
T KOG2111|consen 8 TLSVSFN--QD----HSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSN------------YLALVGGGSR 69 (346)
T ss_pred eeEEEEc--cC----CceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhc------------eEEEecCCCC
Confidence 3458888 66 456777777668999987633322222211 222333333311 34444443
Q ss_pred -----CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEcc-CCcee
Q 003423 97 -----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS-NSSII 170 (821)
Q Consensus 97 -----~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~-~~~~~ 170 (821)
+.|.|||=. + .+++..+. ...+|.++.+.+ ..|++.. .+.|.||... +.+.+
T Consensus 70 pky~pNkviIWDD~-k--------------~~~i~el~-f~~~I~~V~l~r-----~riVvvl-~~~I~VytF~~n~k~l 127 (346)
T KOG2111|consen 70 PKYPPNKVIIWDDL-K--------------ERCIIELS-FNSEIKAVKLRR-----DRIVVVL-ENKIYVYTFPDNPKLL 127 (346)
T ss_pred CCCCCceEEEEecc-c--------------CcEEEEEE-eccceeeEEEcC-----CeEEEEe-cCeEEEEEcCCChhhe
Confidence 479999922 1 13344443 557899999976 4555554 6899999988 44555
Q ss_pred EEEcc---CcceeEEEEeeccCCccCeEEEE-EeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccce
Q 003423 171 LEVHS---PERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (821)
Q Consensus 171 ~~~~~---~~~~~~~s~~~~~~s~~~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (821)
..+.. |.+ +.++. + ..+..+||- |-.-|+|+|-|+... ..
T Consensus 128 ~~~et~~NPkG--lC~~~--~-~~~k~~LafPg~k~GqvQi~dL~~~-------------------------------~~ 171 (346)
T KOG2111|consen 128 HVIETRSNPKG--LCSLC--P-TSNKSLLAFPGFKTGQVQIVDLAST-------------------------------KP 171 (346)
T ss_pred eeeecccCCCc--eEeec--C-CCCceEEEcCCCccceEEEEEhhhc-------------------------------Cc
Confidence 55432 332 22221 1 223344443 666799999999811 11
Q ss_pred eeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEE
Q 003423 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS-ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIIT 323 (821)
Q Consensus 247 ~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s 323 (821)
..-..+.+|...|.|++.+.+|..+||+|..|+ |||||..++.. +++. ..-...+.|++++|++ .+|+.
T Consensus 172 ~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~-----l~E~---RRG~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 172 NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL-----LQEL---RRGVDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE-----eeee---ecCCchheEEEEEeCCCccEEEE
Confidence 123566899999999999999999999999997 69999999877 5433 2333467799999994 78999
Q ss_pred EeCCCeEEEEcC
Q 003423 324 AGEDCTCRVWGS 335 (821)
Q Consensus 324 ~~~dg~i~iwd~ 335 (821)
++..|++.++.+
T Consensus 244 sSdKgTlHiF~l 255 (346)
T KOG2111|consen 244 SSDKGTLHIFSL 255 (346)
T ss_pred EcCCCeEEEEEe
Confidence 999999999998
No 219
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.39 E-value=5e-11 Score=113.34 Aligned_cols=241 Identities=15% Similarity=0.214 Sum_probs=165.4
Q ss_pred eeeEEEEEeccCCCCCCcceEEeecCCeEEEEEC-CCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcC
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDL-EAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~-~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~ 96 (821)
..|++...- |. ...++-++.|.+++||-- ++|+--..+...-..++..+.+.++. ..+++....
T Consensus 25 d~vn~~~l~--~~---e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~----------~~L~vg~~n 89 (404)
T KOG1409|consen 25 DDVNAAILI--PK---EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES----------RRLYVGQDN 89 (404)
T ss_pred hhhhhheec--cC---CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc----------eEEEEEEec
Confidence 345544444 54 245777777999999964 45665555554445567777777442 233334456
Q ss_pred CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeE--EEc
Q 003423 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL--EVH 174 (821)
Q Consensus 97 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~--~~~ 174 (821)
+++.-+.+...- -+....+....|...|..+.|+. ...++++++.|..+.---.+.+..+. .+.
T Consensus 90 gtvtefs~sedf-----------nkm~~~r~~~~h~~~v~~~if~~---~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~ 155 (404)
T KOG1409|consen 90 GTVTEFALSEDF-----------NKMTFLKDYLAHQARVSAIVFSL---THEWVLSTGKDKQFAWHCTESGNRLGGYNFE 155 (404)
T ss_pred ceEEEEEhhhhh-----------hhcchhhhhhhhhcceeeEEecC---CceeEEEeccccceEEEeeccCCcccceEee
Confidence 888777765332 02345667788999999999998 77899999888655433333343322 122
Q ss_pred cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec
Q 003423 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (821)
Q Consensus 175 ~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (821)
....+..+ |-.+...|...|.|.+-.+.. ....++.++.+
T Consensus 156 ~~~t~~~~---------d~~~~fvGd~~gqvt~lr~~~-------------------------------~~~~~i~~~~~ 195 (404)
T KOG1409|consen 156 TPASALQF---------DALYAFVGDHSGQITMLKLEQ-------------------------------NGCQLITTFNG 195 (404)
T ss_pred ccCCCCce---------eeEEEEecccccceEEEEEee-------------------------------cCCceEEEEcC
Confidence 22221111 112555666677777776651 14567889999
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEE
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~i 332 (821)
|.+.|.+++|.|..+.|.+|..|..+.+||+...+. .. ..+.+|...|..+.+. -..++++++||.|.+
T Consensus 196 h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g-----~~----~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 196 HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG-----TA----YELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred cccceEEEEEcCCCcEEEeccccCceEEEeccCCcc-----ee----eeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 999999999999999999999999999999987654 22 5788999999888876 489999999999999
Q ss_pred EcCC
Q 003423 333 WGSD 336 (821)
Q Consensus 333 wd~~ 336 (821)
|+.+
T Consensus 267 w~mn 270 (404)
T KOG1409|consen 267 WNMN 270 (404)
T ss_pred Eecc
Confidence 9983
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=4e-10 Score=107.97 Aligned_cols=207 Identities=16% Similarity=0.205 Sum_probs=134.0
Q ss_pred eeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCe
Q 003423 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (821)
Q Consensus 19 ~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~ 98 (821)
.+.-++++ +. .-.+.+++.|..|+|||-++ +....++......|.+++|.|.. ...++++..+-
T Consensus 100 dlr~~aWh--qH---~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPls----------aselavgCr~g 163 (445)
T KOG2139|consen 100 DLRGVAWH--QH---IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLS----------ASELAVGCRAG 163 (445)
T ss_pred ceeeEeec--hh---hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCC----------cceeeeeecce
Confidence 35567777 53 23456667799999999776 66666665555679999999774 24778888899
Q ss_pred EEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC-CCcEEEEEccCCceeEEE-ccC
Q 003423 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEV-HSP 176 (821)
Q Consensus 99 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~-d~~i~iwd~~~~~~~~~~-~~~ 176 (821)
|.+|..+.............+.. ..+..-++| ..|++++|.+ ||..|++++- |..|.|||..++..+.-. .+.
T Consensus 164 IciW~~s~tln~~r~~~~~s~~~-~qvl~~pgh-~pVtsmqwn~---dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl 238 (445)
T KOG2139|consen 164 ICIWSDSRTLNANRNIRMMSTHH-LQVLQDPGH-NPVTSMQWNE---DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL 238 (445)
T ss_pred eEEEEcCcccccccccccccccc-hhheeCCCC-ceeeEEEEcC---CCCEEeecccCcceEEEEcCCCCCcccccccCC
Confidence 99998774321110000000001 123344566 6899999999 9999998874 678999999998765333 121
Q ss_pred cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCC
Q 003423 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (821)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 256 (821)
.. +.-+.+ +||+.++.+++-|+..++|+.. . +.....-. --.
T Consensus 239 gg--~slLkw---SPdgd~lfaAt~davfrlw~e~------------------------------q--~wt~erw~-lgs 280 (445)
T KOG2139|consen 239 GG--FSLLKW---SPDGDVLFAATCDAVFRLWQEN------------------------------Q--SWTKERWI-LGS 280 (445)
T ss_pred Cc--eeeEEE---cCCCCEEEEecccceeeeehhc------------------------------c--cceeccee-ccC
Confidence 11 111222 6999999999999999999765 0 11111111 234
Q ss_pred CcEEEEEEcCCCCEE-EEEeCCCeEEEEecc
Q 003423 257 GSIFRIEWSSCGSKL-VSVSDDRSARIWEVR 286 (821)
Q Consensus 257 ~~I~~l~~s~~~~~l-~s~s~Dg~i~iwd~~ 286 (821)
+.|...+|+|+|++| ++++ |.-++|.+.
T Consensus 281 grvqtacWspcGsfLLf~~s--gsp~lysl~ 309 (445)
T KOG2139|consen 281 GRVQTACWSPCGSFLLFACS--GSPRLYSLT 309 (445)
T ss_pred CceeeeeecCCCCEEEEEEc--CCceEEEEe
Confidence 489999999999875 4444 334445443
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=1.1e-10 Score=113.05 Aligned_cols=267 Identities=13% Similarity=0.134 Sum_probs=179.0
Q ss_pred eeEEEEEeccCCCCCCcceEEee-cCCeEEEEECCCCeeeeEEE-----eeccccEEeEEeccccCCCCCCccceeeEEE
Q 003423 19 EISALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGTLIRPFQ-----VFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (821)
Q Consensus 19 ~Vt~l~~~~~p~~~~~~~~l~~g-~~~~i~iwd~~t~~~~~~~~-----~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~ 92 (821)
.|++++|-..+. ...+.+. .+..+...+.+.......+. .....+|.++... + ..+++
T Consensus 57 ris~l~~~~d~~----tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--------d----g~Lit 120 (412)
T KOG3881|consen 57 RISSLLFGVDGE----TEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--------D----GTLIT 120 (412)
T ss_pred hhhhheeecCCc----eeEeeccccCcccccccccCCccccccccccccccccccccchhhc--------C----CEEEE
Confidence 456666662222 3444444 34555555555444443321 1122244444433 1 25888
Q ss_pred EEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECC--CcEEEEEccCCcee
Q 003423 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD--NSIRVWDISNSSII 170 (821)
Q Consensus 93 ~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d--~~i~iwd~~~~~~~ 170 (821)
+.++|.+.+|..+.++.-. ..+..+..+ ..+..+.-+| .....+|+|+.. +.+.+||+++.+.+
T Consensus 121 c~~sG~l~~~~~k~~d~hs-----------s~l~~la~g-~g~~~~r~~~--~~p~Iva~GGke~~n~lkiwdle~~~qi 186 (412)
T KOG3881|consen 121 CVSSGNLQVRHDKSGDLHS-----------SKLIKLATG-PGLYDVRQTD--TDPYIVATGGKENINELKIWDLEQSKQI 186 (412)
T ss_pred EecCCcEEEEeccCCcccc-----------ccceeeecC-CceeeeccCC--CCCceEecCchhcccceeeeecccceee
Confidence 8999999999998554111 122223333 3466666665 234567779988 88999999988766
Q ss_pred EEEccCcc--------eeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccc
Q 003423 171 LEVHSPER--------CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (821)
Q Consensus 171 ~~~~~~~~--------~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (821)
.+-+...+ -...++.|.+.++ ...+|+++.-+++++||..
T Consensus 187 w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~-~~~fat~T~~hqvR~YDt~------------------------------- 234 (412)
T KOG3881|consen 187 WSAKNVPNDRLGLRVPVWITDIRFLEGSP-NYKFATITRYHQVRLYDTR------------------------------- 234 (412)
T ss_pred eeccCCCCccccceeeeeeccceecCCCC-CceEEEEecceeEEEecCc-------------------------------
Confidence 65543322 1234566654432 6789999999999999998
Q ss_pred ccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCC--E
Q 003423 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS--F 320 (821)
Q Consensus 243 ~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--~ 320 (821)
.+.+++..+.--+.+|.++...|.++++++|..-+.+..+|++.++. .. ..+.+-.+.|.++..++. +
T Consensus 235 -~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl-----~g----~~~kg~tGsirsih~hp~~~~ 304 (412)
T KOG3881|consen 235 -HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL-----LG----CGLKGITGSIRSIHCHPTHPV 304 (412)
T ss_pred -ccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee-----ec----cccCCccCCcceEEEcCCCce
Confidence 25677778877889999999999999999999999999999999765 32 357788899999999964 9
Q ss_pred EEEEeCCCeEEEEcCC-CceeeEeecccCCCeEEEEEecC
Q 003423 321 IITAGEDCTCRVWGSD-GKQLKMIKEHIGRGIWRCLYDSL 359 (821)
Q Consensus 321 l~s~~~dg~i~iwd~~-~~~~~~~~~h~~~~i~~l~~~~~ 359 (821)
++++|.|..+||+|+. .+.+....... .++++.+.++
T Consensus 305 las~GLDRyvRIhD~ktrkll~kvYvKs--~lt~il~~~~ 342 (412)
T KOG3881|consen 305 LASCGLDRYVRIHDIKTRKLLHKVYVKS--RLTFILLRDD 342 (412)
T ss_pred EEeeccceeEEEeecccchhhhhhhhhc--cccEEEecCC
Confidence 9999999999999994 35444433222 3666666543
No 222
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.33 E-value=6.5e-12 Score=123.86 Aligned_cols=190 Identities=16% Similarity=0.221 Sum_probs=152.3
Q ss_pred EEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCC
Q 003423 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (821)
Q Consensus 135 I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~ 214 (821)
-+.+.++. +|..|+.|+..|.|..+|..+++...++..-+. +..+.|. .+..++|++ ....++|||-.
T Consensus 132 PY~~~ytr---nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Et--v~Dv~~L---Hneq~~AVA-QK~y~yvYD~~--- 199 (545)
T KOG1272|consen 132 PYHLDYTR---NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMET--VRDVTFL---HNEQFFAVA-QKKYVYVYDNN--- 199 (545)
T ss_pred CeeeeecC---CccEEEecCCccceeeeecccceeeeeeehhhh--hhhhhhh---cchHHHHhh-hhceEEEecCC---
Confidence 46688888 999999999999999999999998888765543 3444442 345566655 56788999865
Q ss_pred cccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCC
Q 003423 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (821)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 294 (821)
+..++.++.| ..|..+.|.|..-+|++++..|.++--|+.+++.
T Consensus 200 -------------------------------GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl---- 243 (545)
T KOG1272|consen 200 -------------------------------GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL---- 243 (545)
T ss_pred -------------------------------CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhh----
Confidence 3445666655 4689999999988999999999999999999876
Q ss_pred CceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCc
Q 003423 295 SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (821)
Q Consensus 295 ~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~ 371 (821)
+ ..+..-.+++..++-+ +..+-+|...|+|.+|.. ..+++..+..|.+ +|.++++.++|++++|.|.|..
T Consensus 244 -V-----a~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~ 316 (545)
T KOG1272|consen 244 -V-----ASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRK 316 (545)
T ss_pred -h-----HHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccc
Confidence 4 2344445555566655 467788999999999999 5677888889999 7999999999999999999999
Q ss_pred EEEEEcCC
Q 003423 372 IKVHQFQA 379 (821)
Q Consensus 372 I~iwd~~~ 379 (821)
++|||++.
T Consensus 317 ~kIWDlR~ 324 (545)
T KOG1272|consen 317 VKIWDLRN 324 (545)
T ss_pred eeEeeecc
Confidence 99999965
No 223
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=3.2e-11 Score=118.21 Aligned_cols=197 Identities=16% Similarity=0.154 Sum_probs=134.3
Q ss_pred EEEEEeccCCCCCCcceEEee-cCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeE
Q 003423 21 SALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV 99 (821)
Q Consensus 21 t~l~~~~~p~~~~~~~~l~~g-~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v 99 (821)
.+++|+ ++ +..|++| .||.++||++.+...+.....+++ .|.++.|+|++ + .++.++++ ..
T Consensus 148 k~vaf~--~~----gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~-eV~DL~FS~dg-------k---~lasig~d-~~ 209 (398)
T KOG0771|consen 148 KVVAFN--GD----GSKLATGGTDGTLRVWEWPSMLTILEEIAHHA-EVKDLDFSPDG-------K---FLASIGAD-SA 209 (398)
T ss_pred eEEEEc--CC----CCEeeeccccceEEEEecCcchhhhhhHhhcC-ccccceeCCCC-------c---EEEEecCC-ce
Confidence 578898 77 6677776 499999999888777777776666 69999999663 2 34444455 99
Q ss_pred EEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCC---CEE-E-EEECCCcEEEEEccCCce--eEE
Q 003423 100 KLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN---RSL-A-IGCSDNSIRVWDISNSSI--ILE 172 (821)
Q Consensus 100 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~---~~l-~-t~~~d~~i~iwd~~~~~~--~~~ 172 (821)
+||+...+.. +.. .+-..-+.....+.|+. ++ .+. | .....+.|+.||+..... ...
T Consensus 210 ~VW~~~~g~~------------~a~-~t~~~k~~~~~~cRF~~---d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~ 273 (398)
T KOG0771|consen 210 RVWSVNTGAA------------LAR-KTPFSKDEMFSSCRFSV---DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR 273 (398)
T ss_pred EEEEeccCch------------hhh-cCCcccchhhhhceecc---cCCCceEEEEEecCCCCceeEEEeeeeccccccc
Confidence 9999986531 000 11122334466677876 43 222 2 223456677777653221 111
Q ss_pred EccC--cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEE
Q 003423 173 VHSP--ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (821)
Q Consensus 173 ~~~~--~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (821)
.... ....+.+++. +.+++++|.|+.||.|-|++.. +.+.++
T Consensus 274 ~~~~~~~~~siSsl~V---S~dGkf~AlGT~dGsVai~~~~---------------------------------~lq~~~ 317 (398)
T KOG0771|consen 274 LRKKIKRFKSISSLAV---SDDGKFLALGTMDGSVAIYDAK---------------------------------SLQRLQ 317 (398)
T ss_pred hhhhhhccCcceeEEE---cCCCcEEEEeccCCcEEEEEec---------------------------------eeeeeE
Confidence 1110 1113455655 6899999999999999999988 444333
Q ss_pred -EEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeccc
Q 003423 251 -RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (821)
Q Consensus 251 -~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~ 287 (821)
.-+.|...|++|.|+||.+++++.+.|.+..+-.+.-
T Consensus 318 ~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 318 YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 3458999999999999999999999999999988765
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=1.3e-10 Score=112.62 Aligned_cols=200 Identities=19% Similarity=0.211 Sum_probs=134.2
Q ss_pred cceEEeecCCeEEEEECCCCe----eeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc-C--CeEEEEEEeec
Q 003423 35 LPFLLAGSGSQVLLYDLEAGT----LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-E--KRVKLFELNFE 107 (821)
Q Consensus 35 ~~~l~~g~~~~i~iwd~~t~~----~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g-~--~~v~i~~~~~~ 107 (821)
+.++++-++|.+.+|..+.+. ++..++...+ +..+.-.+.. ..+++.+| . +.+.+||++..
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g--~~~~r~~~~~----------p~Iva~GGke~~n~lkiwdle~~ 183 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPG--LYDVRQTDTD----------PYIVATGGKENINELKIWDLEQS 183 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeeecCCc--eeeeccCCCC----------CceEecCchhcccceeeeecccc
Confidence 456666668999999998543 3333443222 3333322211 23555454 3 57899999854
Q ss_pred CCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc-eeEEEccCcceeEEEEee
Q 003423 108 LSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHSPERCLLYSMKL 186 (821)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~s~~~ 186 (821)
.+ -|++ .+++-..+. -.-+-|++++.|.|.+ ....+||++.-+.+|+||...+. .+.++...+.. +.++..
T Consensus 184 ~q---iw~a-KNvpnD~L~--LrVPvW~tdi~Fl~g~-~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~-is~~~l 255 (412)
T KOG3881|consen 184 KQ---IWSA-KNVPNDRLG--LRVPVWITDIRFLEGS-PNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP-ISSTGL 255 (412)
T ss_pred ee---eeec-cCCCCcccc--ceeeeeeccceecCCC-CCceEEEEecceeEEEecCcccCcceeEeccccCc-ceeeee
Confidence 20 0000 000000000 0123589999999821 16789999999999999998664 46666655443 334433
Q ss_pred ccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEE-EecCCCcEEEEEEc
Q 003423 187 WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR-LVGHEGSIFRIEWS 265 (821)
Q Consensus 187 ~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~I~~l~~s 265 (821)
.|+++.|++|..-|.+..+|.+ ....... +.+-.|+|.+|..+
T Consensus 256 ---~p~gn~Iy~gn~~g~l~~FD~r---------------------------------~~kl~g~~~kg~tGsirsih~h 299 (412)
T KOG3881|consen 256 ---TPSGNFIYTGNTKGQLAKFDLR---------------------------------GGKLLGCGLKGITGSIRSIHCH 299 (412)
T ss_pred ---cCCCcEEEEecccchhheeccc---------------------------------CceeeccccCCccCCcceEEEc
Confidence 4889999999999999999999 4444444 88999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEecccCcc
Q 003423 266 SCGSKLVSVSDDRSARIWEVRAEYW 290 (821)
Q Consensus 266 ~~~~~l~s~s~Dg~i~iwd~~~~~~ 290 (821)
|.+++|++||-|+.|||+|+++.+.
T Consensus 300 p~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 300 PTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred CCCceEEeeccceeEEEeecccchh
Confidence 9999999999999999999998654
No 225
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=7.2e-10 Score=112.52 Aligned_cols=279 Identities=15% Similarity=0.147 Sum_probs=177.2
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEe-ec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLA-GS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~-g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (821)
+...-|.+..+ || ++|++| |. -+.|++||+..-.+. .-+..+...|.-+-.+.++ ...+..
T Consensus 50 ~p~ast~ik~s--~D----GqY~lAtG~YKP~ikvydlanLSLK-FERhlDae~V~feiLsDD~----------SK~v~L 112 (703)
T KOG2321|consen 50 MPTASTRIKVS--PD----GQYLLATGTYKPQIKVYDLANLSLK-FERHLDAEVVDFEILSDDY----------SKSVFL 112 (703)
T ss_pred CccccceeEec--CC----CcEEEEecccCCceEEEEcccceee-eeecccccceeEEEeccch----------hhheEe
Confidence 44556788899 99 555555 55 599999999865432 1123344434434344221 123334
Q ss_pred EcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEE
Q 003423 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (821)
Q Consensus 94 ~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 173 (821)
-.|++|.+-.-.- ...-..++ ..-.+++++. ++-.+ ..++....|.-.+++.|..+..+
T Consensus 113 ~~DR~IefHak~G---------------~hy~~RIP---~~GRDm~y~~--~scDl-y~~gsg~evYRlNLEqGrfL~P~ 171 (703)
T KOG2321|consen 113 QNDRTIEFHAKYG---------------RHYRTRIP---KFGRDMKYHK--PSCDL-YLVGSGSEVYRLNLEQGRFLNPF 171 (703)
T ss_pred ecCceeeehhhcC---------------eeeeeecC---cCCccccccC--CCccE-EEeecCcceEEEEcccccccccc
Confidence 4455554422110 00001111 2234566664 13344 44444567888899999887766
Q ss_pred ccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe
Q 003423 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (821)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (821)
..... .++++.. ++...+|++|+.+|.|..||.+...... .+ .......
T Consensus 172 ~~~~~-~lN~v~i---n~~hgLla~Gt~~g~VEfwDpR~ksrv~------------------~l---------~~~~~v~ 220 (703)
T KOG2321|consen 172 ETDSG-ELNVVSI---NEEHGLLACGTEDGVVEFWDPRDKSRVG------------------TL---------DAASSVN 220 (703)
T ss_pred ccccc-cceeeee---cCccceEEecccCceEEEecchhhhhhe------------------ee---------ecccccC
Confidence 54433 2444444 4677899999999999999998221111 00 1111112
Q ss_pred cCCC-----cEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEecc--ceeEEEEEEcC----CEEE
Q 003423 254 GHEG-----SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH--NARVWDCCLTD----SFII 322 (821)
Q Consensus 254 ~h~~-----~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h--~~~i~~v~~~~----~~l~ 322 (821)
.|.+ .|+++.|+.+|-.++.|..+|.+.|||++..+. .....| .-+|..+.|.+ +.++
T Consensus 221 s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-----------l~~kdh~~e~pi~~l~~~~~~~q~~v~ 289 (703)
T KOG2321|consen 221 SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-----------LLVKDHGYELPIKKLDWQDTDQQNKVV 289 (703)
T ss_pred CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-----------eeecccCCccceeeecccccCCCceEE
Confidence 3333 499999999999999999999999999999765 244444 45678888862 4555
Q ss_pred EEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 323 TAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 323 s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
|. ....++|||- +|+....+..... +..+++-|++.+++++-.++.+..|=+
T Consensus 290 S~-Dk~~~kiWd~~~Gk~~asiEpt~~--lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 290 SM-DKRILKIWDECTGKPMASIEPTSD--LNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred ec-chHHhhhcccccCCceeeccccCC--cCceeeecCCceEEEecCCCcceeEEc
Confidence 54 4568999998 8888877765543 889999999999999999888877755
No 226
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=2.1e-10 Score=123.98 Aligned_cols=231 Identities=12% Similarity=0.046 Sum_probs=147.2
Q ss_pred CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE-c--CCeEEEEEEeecCCCCCCCCCcccc
Q 003423 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-G--EKRVKLFELNFELSPNSQYQPETCV 120 (821)
Q Consensus 44 ~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g--~~~v~i~~~~~~~~~~~~~~~~~~~ 120 (821)
..|.+||..... ...+..+ ...+....|+|++ + .++.+. + +..|.+||+..+.
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~-~~~v~~p~wSPDG-------~---~la~~s~~~~~~~i~i~dl~tg~------------ 239 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRS-SQPLMSPAWSPDG-------S---KLAYVSFENKKSQLVVHDLRSGA------------ 239 (429)
T ss_pred EEEEEECCCCCC-ceEeccC-CCccccceEcCCC-------C---EEEEEEecCCCcEEEEEeCCCCc------------
Confidence 689999986554 3444433 3368889999664 2 333333 2 2479999987542
Q ss_pred ccceeeeccCCCCcEEEEEEeecCCCCCEEEEEE-CCCcEEEE--EccCCceeEEEccCcceeEEEEeeccCCccCeEEE
Q 003423 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVW--DISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (821)
Q Consensus 121 ~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (821)
.+.+..+.+|. ..++|+| +|+.|+.++ .+|.+.|| |+.++. ...+..+. ....+..| ++|+..|+
T Consensus 240 -~~~l~~~~g~~---~~~~wSP---DG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~-~~~~~~~w---SpDG~~i~ 307 (429)
T PRK01742 240 -RKVVASFRGHN---GAPAFSP---DGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGA-GNNTEPSW---SPDGQSIL 307 (429)
T ss_pred -eEEEecCCCcc---CceeECC---CCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCC-CCcCCEEE---CCCCCEEE
Confidence 23344455543 3689999 999888764 67876666 554544 33443322 22334444 57887666
Q ss_pred E-EeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeC
Q 003423 198 S-GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (821)
Q Consensus 198 s-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~ 276 (821)
. +..+|...||++.. .......+ ++.+ ....|+|+|++|+..+.
T Consensus 308 f~s~~~g~~~I~~~~~--------------------------------~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 308 FTSDRSGSPQVYRMSA--------------------------------SGGGASLV-GGRG--YSAQISADGKTLVMING 352 (429)
T ss_pred EEECCCCCceEEEEEC--------------------------------CCCCeEEe-cCCC--CCccCCCCCCEEEEEcC
Confidence 4 44678899998761 01111122 3444 45789999999988887
Q ss_pred CCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC---CCceeeEeecccCCCe
Q 003423 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS---DGKQLKMIKEHIGRGI 351 (821)
Q Consensus 277 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~---~~~~~~~~~~h~~~~i 351 (821)
++ +.+||+.++.. ..+... ....++.|+ +..|+.++.++...+|.+ +|+..+.+..|.+ .+
T Consensus 353 ~~-i~~~Dl~~g~~-----------~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g-~~ 418 (429)
T PRK01742 353 DN-VVKQDLTSGST-----------EVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG-QV 418 (429)
T ss_pred CC-EEEEECCCCCe-----------EEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC-CC
Confidence 66 55599887654 111111 123456677 578999988998887775 7888899988877 48
Q ss_pred EEEEEecC
Q 003423 352 WRCLYDSL 359 (821)
Q Consensus 352 ~~l~~~~~ 359 (821)
...+|+|-
T Consensus 419 ~~p~wsp~ 426 (429)
T PRK01742 419 KFPAWSPY 426 (429)
T ss_pred CCcccCCC
Confidence 88889874
No 227
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.28 E-value=3e-09 Score=100.63 Aligned_cols=343 Identities=13% Similarity=0.117 Sum_probs=199.0
Q ss_pred EEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEE
Q 003423 22 ALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKL 101 (821)
Q Consensus 22 ~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i 101 (821)
-.+|| |+ ++++|+..+-.+.|=|.+|-++++-+...+ .|.-|.|..+.+ ..+.+...++.|.+
T Consensus 13 ~c~fS--p~----g~yiAs~~~yrlviRd~~tlq~~qlf~cld--ki~yieW~ads~---------~ilC~~yk~~~vqv 75 (447)
T KOG4497|consen 13 FCSFS--PC----GNYIASLSRYRLVIRDSETLQLHQLFLCLD--KIVYIEWKADSC---------HILCVAYKDPKVQV 75 (447)
T ss_pred ceeEC--CC----CCeeeeeeeeEEEEeccchhhHHHHHHHHH--Hhhheeeeccce---------eeeeeeeccceEEE
Confidence 35789 98 899999999899999998877765544322 466777774310 12334456889999
Q ss_pred EEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCC-EEEEEECCCcEEEEEccCCceeEEEccCccee
Q 003423 102 FELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180 (821)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 180 (821)
|++... +-...+..-++.+.+++||| +|+ .|.+..-|-.|.+|.+.+.+... ++.+..+
T Consensus 76 wsl~Qp---------------ew~ckIdeg~agls~~~WSP---dgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~- 135 (447)
T KOG4497|consen 76 WSLVQP---------------EWYCKIDEGQAGLSSISWSP---DGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTN- 135 (447)
T ss_pred EEeecc---------------eeEEEeccCCCcceeeeECC---CcceEeeeecceeEEEEEEeccceeEE-ecccccC-
Confidence 999854 23455666778899999999 885 56677779999999998876543 2222222
Q ss_pred EEEEeeccCCccCeEEEEEeeCCE---EEE-----EEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE
Q 003423 181 LYSMKLWGDNLEALRIASGTIYNE---IIV-----WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (821)
Q Consensus 181 ~~s~~~~~~s~~~~~l~sg~~dg~---i~v-----wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (821)
+...+| .+|+++.+..++... +.+ |.+-.....+..+ .....-++++.. +.+++.....+.. ..
T Consensus 136 ~kg~~f---~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~D-ltgieWsPdg~~---laVwd~~Leykv~-aY 207 (447)
T KOG4497|consen 136 VKGYAF---HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTID-LTGIEWSPDGNW---LAVWDNVLEYKVY-AY 207 (447)
T ss_pred ceeEEE---CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccc-ccCceECCCCcE---EEEecchhhheee-ee
Confidence 234444 478888887765311 111 1111000000000 000011111111 1122211111111 11
Q ss_pred ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCccc-----------------------------------------
Q 003423 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK----------------------------------------- 291 (821)
Q Consensus 253 ~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~----------------------------------------- 291 (821)
.-.-.+..++|+|.+++|+.|+.|+.+|+.+--+-+.-
T Consensus 208 -e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 208 -ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred -eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 12246889999999999999999999998654322110
Q ss_pred ----CCCC---ceee-------e-ceEEeccceeEEEEEEc-CCEEEEEeCC---CeEEEEcCCCceeeEeecccCCCeE
Q 003423 292 ----DSDS---IEEV-------G-SSVLYGHNARVWDCCLT-DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRGIW 352 (821)
Q Consensus 292 ----~~~~---~~~~-------~-~~~~~~h~~~i~~v~~~-~~~l~s~~~d---g~i~iwd~~~~~~~~~~~h~~~~i~ 352 (821)
.+.. ...+ + +.........+--++|+ +.+.+..-.| +.+-+||+....+..+-.... +|.
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~-pir 365 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKH-PIR 365 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcc-cee
Confidence 0000 0000 0 00111122335567787 3444443334 578899997665555544444 799
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCe
Q 003423 353 RCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT 432 (821)
Q Consensus 353 ~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~ 432 (821)
...|+|....|+.......+.+|...+.. .+..|. .+-.|..+.+..+|.
T Consensus 366 af~WdP~~prL~vctg~srLY~W~psg~~--------------------~V~vP~----------~GF~i~~l~W~~~g~ 415 (447)
T KOG4497|consen 366 AFEWDPGRPRLVVCTGKSRLYFWAPSGPR--------------------VVGVPK----------KGFNIQKLQWLQPGE 415 (447)
T ss_pred EEEeCCCCceEEEEcCCceEEEEcCCCce--------------------EEecCC----------CCceeeeEEecCCCc
Confidence 99999998888887777789999875411 111111 123478888888887
Q ss_pred EEEEecCCc
Q 003423 433 LYIATNHGY 441 (821)
Q Consensus 433 ~l~~~~~g~ 441 (821)
.++..+...
T Consensus 416 ~i~l~~kDa 424 (447)
T KOG4497|consen 416 FIVLCGKDA 424 (447)
T ss_pred EEEEEcCCc
Confidence 776665433
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.28 E-value=2.5e-08 Score=104.07 Aligned_cols=190 Identities=12% Similarity=0.077 Sum_probs=119.9
Q ss_pred CCEEE-EEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCc
Q 003423 147 NRSLA-IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (821)
Q Consensus 147 ~~~l~-t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 225 (821)
+++++ +-..+|.|.+.|..+.+.+.++...... ...+.+ ++|+.++++.+.||.|.++|+.
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~-h~~~~~---s~Dgr~~yv~~rdg~vsviD~~-------------- 66 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAP-HAGLKF---SPDGRYLYVANRDGTVSVIDLA-------------- 66 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTE-EEEEE----TT-SSEEEEEETTSEEEEEETT--------------
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCc-eeEEEe---cCCCCEEEEEcCCCeEEEEECC--------------
Confidence 34554 4456899999999999999988765432 222333 6899999999999999999998
Q ss_pred ccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEecccCcccCCCCceeeeceEE
Q 003423 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (821)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 304 (821)
+.+.+.++..-. ...++++++||++++++ ..++.+.++|..+.+. ++.+.....
T Consensus 67 -------------------~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-----v~~I~~~~~ 121 (369)
T PF02239_consen 67 -------------------TGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-----VKTIPTGGM 121 (369)
T ss_dssp -------------------SSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-----EEEEE--EE
T ss_pred -------------------cccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccc-----eeecccccc
Confidence 666777776443 45789999999988755 5689999999998765 443321111
Q ss_pred ec--cceeEEEEEEc---CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEE-eCCCcEEEEEc
Q 003423 305 YG--HNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA-GFDSAIKVHQF 377 (821)
Q Consensus 305 ~~--h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg-~~dg~I~iwd~ 377 (821)
.. ...++.++..+ +.++++.-+.+.|-+-|+ +.+.+..-....++......|+|++++++.+ ..+..|-++|.
T Consensus 122 ~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 122 PVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp -TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred cccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEee
Confidence 11 34567777655 235556566688877787 3333322222233357788999999987665 45668888887
Q ss_pred CC
Q 003423 378 QA 379 (821)
Q Consensus 378 ~~ 379 (821)
..
T Consensus 202 ~~ 203 (369)
T PF02239_consen 202 KT 203 (369)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 229
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=4.1e-09 Score=101.17 Aligned_cols=262 Identities=13% Similarity=0.142 Sum_probs=159.3
Q ss_pred cEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccC
Q 003423 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (821)
Q Consensus 134 ~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~ 213 (821)
.+..++|++ .-..+|++..|-.|++||-.. ++...++......+.++++.+.+.. -++.|.. +-|.+|.....
T Consensus 100 dlr~~aWhq---H~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsas--elavgCr-~gIciW~~s~t 172 (445)
T KOG2139|consen 100 DLRGVAWHQ---HIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSAS--ELAVGCR-AGICIWSDSRT 172 (445)
T ss_pred ceeeEeech---hhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcc--eeeeeec-ceeEEEEcCcc
Confidence 477899998 667788999999999999766 5555566666556777887766543 5666665 56899987611
Q ss_pred CcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEecccCcccC
Q 003423 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKD 292 (821)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~-Dg~i~iwd~~~~~~~~ 292 (821)
-.. ..+....+ .....+..-.|| ..|+++.|++||..|++++. |..|+|||..++..
T Consensus 173 ln~----~r~~~~~s---------------~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-- 230 (445)
T KOG2139|consen 173 LNA----NRNIRMMS---------------THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-- 230 (445)
T ss_pred ccc----cccccccc---------------ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc--
Confidence 000 00000000 011123333466 78999999999999998875 58899999999865
Q ss_pred CCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCC
Q 003423 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (821)
Q Consensus 293 ~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~d 369 (821)
.. ...--.+.+.-+.|+ +++|+.+.-|+..++|.. ............+ .|....|+|+|++|+-...
T Consensus 231 ---~p-----L~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~s- 300 (445)
T KOG2139|consen 231 ---IP-----LIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFACS- 300 (445)
T ss_pred ---cc-----ccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEEc-
Confidence 21 111234457778998 589999999999999965 3222223333344 4999999999987655442
Q ss_pred CcEEEEEc--CCcCCCcccCCccccccCCCcceEE-eecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcE
Q 003423 370 SAIKVHQF--QAFLPGSLESHPEAKEFNGRTEIFS-IKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYL 442 (821)
Q Consensus 370 g~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~ 442 (821)
|.=++|.+ .++...-.... ...++.- ..++..... .....-.+.+.++++.|.|.+++..-.|..
T Consensus 301 gsp~lysl~f~~~~~~~~~~~-------~~k~~lliaDL~e~ti~-ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 301 GSPRLYSLTFDGEDSVFLRPQ-------SIKRVLLIADLQEVTIC-AGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred CCceEEEEeecCCCccccCcc-------cceeeeeeccchhhhhh-cCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 33455655 22221111000 0000000 000000000 000111356899999999999988766653
No 230
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.26 E-value=1.6e-10 Score=116.31 Aligned_cols=197 Identities=14% Similarity=0.127 Sum_probs=128.0
Q ss_pred eEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEE----eeccccEEeEEeccccCCCCCCccceeeEEEEEc
Q 003423 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQ----VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (821)
Q Consensus 20 Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~----~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g 95 (821)
-+|-+|...++...+-++|+-=.-|.|.++|....+ +..+- .....+|.+|.|.+. .+ ...+++..
T Consensus 171 P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg-----~~----~~Fl~a~~ 240 (636)
T KOG2394|consen 171 PTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPG-----SD----SLFLVAHA 240 (636)
T ss_pred CceecccccccCCCCcceEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeC-----CC----ceEEEEEe
Confidence 356666432332123445544446889999987632 22211 112357999999865 23 24666677
Q ss_pred CCeEEEEEEeecC-CCCCCCCCcccc-cc-----------ceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEE
Q 003423 96 EKRVKLFELNFEL-SPNSQYQPETCV-NL-----------SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVW 162 (821)
Q Consensus 96 ~~~v~i~~~~~~~-~~~~~~~~~~~~-~~-----------~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iw 162 (821)
++.+.+||..... .....+++.... .+ .++..+.--.+.|...+|+| ||++||+.+.||.+||+
T Consensus 241 sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~---DG~~LA~VSqDGfLRvF 317 (636)
T KOG2394|consen 241 SGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP---DGKYLATVSQDGFLRIF 317 (636)
T ss_pred cCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC---CCceEEEEecCceEEEe
Confidence 8999999875321 001111110000 00 12222222345789999999 99999999999999999
Q ss_pred EccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccc
Q 003423 163 DISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (821)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (821)
|..+.+++..++..-.. +.++++ +||+++|++|+.|--|.||.+.
T Consensus 318 ~fdt~eLlg~mkSYFGG-LLCvcW---SPDGKyIvtGGEDDLVtVwSf~------------------------------- 362 (636)
T KOG2394|consen 318 DFDTQELLGVMKSYFGG-LLCVCW---SPDGKYIVTGGEDDLVTVWSFE------------------------------- 362 (636)
T ss_pred eccHHHHHHHHHhhccc-eEEEEE---cCCccEEEecCCcceEEEEEec-------------------------------
Confidence 99988776555543332 223333 5999999999999999999998
Q ss_pred ccceeeEEEEecCCCcEEEEEEcC
Q 003423 243 QHTAVNLFRLVGHEGSIFRIEWSS 266 (821)
Q Consensus 243 ~~~~~~~~~~~~h~~~I~~l~~s~ 266 (821)
..+.+..=.||+.+|..|+|.|
T Consensus 363 --erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 --ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred --cceEEEeccccccceeeEeecc
Confidence 6777888889999999999983
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.22 E-value=4e-08 Score=102.53 Aligned_cols=272 Identities=9% Similarity=0.016 Sum_probs=160.6
Q ss_pred cceEEeec--CCeEEEEECCCCeeeeEEEeeccccEEe-EEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCC
Q 003423 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHG-ISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPN 111 (821)
Q Consensus 35 ~~~l~~g~--~~~i~iwd~~t~~~~~~~~~~~~~~i~~-i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~ 111 (821)
+.+++..+ ++.|.|.|..+.+.+.++..... +|. +.+++++ .+++++..|+.|.++|+...
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~--~h~~~~~s~Dg----------r~~yv~~rdg~vsviD~~~~---- 68 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGA--PHAGLKFSPDG----------RYLYVANRDGTVSVIDLATG---- 68 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STT--EEEEEE-TT-S----------SEEEEEETTSEEEEEETTSS----
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCC--ceeEEEecCCC----------CEEEEEcCCCeEEEEECCcc----
Confidence 34554433 79999999999999999986443 454 6677553 25666677999999999854
Q ss_pred CCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEE-CCCcEEEEEccCCceeEEEccCcc------eeEEEE
Q 003423 112 SQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSIILEVHSPER------CLLYSM 184 (821)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~~------~~~~s~ 184 (821)
+.+.+++.- ....++++++ +|++++++. ..+.+.++|.++.+.++.+..... +-+.++
T Consensus 69 -----------~~v~~i~~G-~~~~~i~~s~---DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aI 133 (369)
T PF02239_consen 69 -----------KVVATIKVG-GNPRGIAVSP---DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAI 133 (369)
T ss_dssp -----------SEEEEEE-S-SEEEEEEE-----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEE
T ss_pred -----------cEEEEEecC-CCcceEEEcC---CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeE
Confidence 456666544 3468899999 999988764 689999999999999887753311 111122
Q ss_pred eeccCCccCe-EEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEE
Q 003423 185 KLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIE 263 (821)
Q Consensus 185 ~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 263 (821)
.. ++... ++++--..++|.+-|... ..........-........
T Consensus 134 v~---s~~~~~fVv~lkd~~~I~vVdy~d--------------------------------~~~~~~~~i~~g~~~~D~~ 178 (369)
T PF02239_consen 134 VA---SPGRPEFVVNLKDTGEIWVVDYSD--------------------------------PKNLKVTTIKVGRFPHDGG 178 (369)
T ss_dssp EE----SSSSEEEEEETTTTEEEEEETTT--------------------------------SSCEEEEEEE--TTEEEEE
T ss_pred Ee---cCCCCEEEEEEccCCeEEEEEecc--------------------------------ccccceeeecccccccccc
Confidence 11 23444 555555558887778761 1111212223445677899
Q ss_pred EcCCCCEEEE-EeCCCeEEEEecccCcccCCCCceeeec--------eEEecc--ceeEEEEEEcCCEEEEEeCCCeEEE
Q 003423 264 WSSCGSKLVS-VSDDRSARIWEVRAEYWKDSDSIEEVGS--------SVLYGH--NARVWDCCLTDSFIITAGEDCTCRV 332 (821)
Q Consensus 264 ~s~~~~~l~s-~s~Dg~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~h--~~~i~~v~~~~~~l~s~~~dg~i~i 332 (821)
|+|++++++. ...+..|-++|..+++. ...+.. ..-..| .+++|...-.+...++.-....+.+
T Consensus 179 ~dpdgry~~va~~~sn~i~viD~~~~k~-----v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v 253 (369)
T PF02239_consen 179 FDPDGRYFLVAANGSNKIAVIDTKTGKL-----VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSV 253 (369)
T ss_dssp E-TTSSEEEEEEGGGTEEEEEETTTTEE-----EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-
T ss_pred cCcccceeeecccccceeEEEeeccceE-----EEEeeccccccccccccccCCCcceEEeeccccceecccccCCcccc
Confidence 9999998655 45667899999888754 221100 001112 2334544433444434434446667
Q ss_pred EcC-CCceeeEeecccCCCeEEEEEecCCCEEEEE----eCCCcEEEEEcCC
Q 003423 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA----GFDSAIKVHQFQA 379 (821)
Q Consensus 333 wd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg----~~dg~I~iwd~~~ 379 (821)
|+. +.+.++++....+ + .-+..+|+++++.+. ...+.|.++|.++
T Consensus 254 ~d~~~wkvv~~I~~~G~-g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 254 HDDYAWKVVKTIPTQGG-G-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp STTTBTSEEEEEE-SSS-S---EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred chhhcCeEEEEEECCCC-c-ceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence 887 7889999987655 5 677889999999998 4558899999865
No 232
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.19 E-value=2.6e-09 Score=101.82 Aligned_cols=272 Identities=15% Similarity=0.193 Sum_probs=165.1
Q ss_pred eeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCe-----eeeEEEeec-----------cccEEeEEeccccCCC
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----LIRPFQVFH-----------GIRLHGISCNFINCTE 80 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~-----~~~~~~~~~-----------~~~i~~i~~~~~~~~~ 80 (821)
.-|+++.|. .. +.+|++|. ||.|.++.-+... ....++.|+ ..+|..|.|.+++
T Consensus 26 diis~vef~--~~----Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~--- 96 (433)
T KOG1354|consen 26 DIISAVEFD--HY----GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG--- 96 (433)
T ss_pred cceeeEEee--cc----cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC---
Confidence 347899999 55 78999998 7999999865322 222232222 2467778877553
Q ss_pred CCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCC------cc--cc------------ccceeee-ccCCCCcEEEEE
Q 003423 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQP------ET--CV------------NLSLVQS-LPRLSHWVFDVC 139 (821)
Q Consensus 81 ~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~------~~--~~------------~~~~~~~-~~~h~~~I~~~~ 139 (821)
.. ...+++..|+++++|.+........++.- .. .+ ...+.+. -.+|+--|.++.
T Consensus 97 -n~----a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS 171 (433)
T KOG1354|consen 97 -NL----AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSIS 171 (433)
T ss_pred -Cc----cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeee
Confidence 11 35677778999999999855422211100 00 00 0111111 245777899999
Q ss_pred EeecCCCCCEEEEEECCCcEEEEEccCCce---eEEEccCc----ceeEEEEeeccCCccCeEEEEEeeCCEEEEEEccc
Q 003423 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSSI---ILEVHSPE----RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (821)
Q Consensus 140 ~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~---~~~~~~~~----~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~ 212 (821)
++. |+..++++. |-.|-+|+++--.. +..++.+. ..++.++.|++. .-+.++-.+..|+|++-|++.
T Consensus 172 ~Ns---D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~--~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 172 VNS---DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH--HCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred ecC---ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh--HccEEEEecCCCcEEEeechh
Confidence 998 888888764 77899999873322 22233221 235677778653 456777788889999999982
Q ss_pred CCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccC
Q 003423 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (821)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~ 292 (821)
..+--...+ +...........-+.+--.+|..+.|+++|+++++-.. -+|++||+.....
T Consensus 246 ~aLCd~hsK-----------------lfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~-- 305 (433)
T KOG1354|consen 246 SALCDAHSK-----------------LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAK-- 305 (433)
T ss_pred hhhhcchhh-----------------hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCC--
Confidence 211000000 00000011111112234467889999999999998654 7999999965432
Q ss_pred CCCceeeeceEEeccc------------eeE---EEEEEcC--CEEEEEeCCCeEEEEcCC
Q 003423 293 SDSIEEVGSSVLYGHN------------ARV---WDCCLTD--SFIITAGEDCTCRVWGSD 336 (821)
Q Consensus 293 ~~~~~~~~~~~~~~h~------------~~i---~~v~~~~--~~l~s~~~dg~i~iwd~~ 336 (821)
++ .+..-|. ..| ..++|++ .+++||+.....++++..
T Consensus 306 --pv-----~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 306 --PV-----ETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred --cc-----eEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 02 2333332 122 4577874 599999999999999973
No 233
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.18 E-value=2.9e-06 Score=98.75 Aligned_cols=293 Identities=12% Similarity=0.181 Sum_probs=174.2
Q ss_pred eeeEEEEEeccCCCCCCcceEEeecCCeEEEE----ECCCCe--eeeEEEeeccccEEeEEeccccCCCCCCccceeeEE
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLY----DLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iw----d~~t~~--~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l 91 (821)
+.|.++.+. ++ ...++++-.+|.|.++ |..+.+ .+..+. ..|.+++|+|+. +.++
T Consensus 76 ~~ivs~~yl--~d---~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd----~GI~a~~WSPD~----------Ella 136 (928)
T PF04762_consen 76 DKIVSFQYL--AD---SESLCIALASGDIILVREDPDPDEDEIEIVGSVD----SGILAASWSPDE----------ELLA 136 (928)
T ss_pred CcEEEEEec--cC---CCcEEEEECCceEEEEEccCCCCCceeEEEEEEc----CcEEEEEECCCc----------CEEE
Confidence 457777777 77 4567777779999999 555443 333332 269999999874 4677
Q ss_pred EEEcCCeEEEEEEeecC----------------------CCCCCCCCccccc---------c--ceeeeccCCCCcEEEE
Q 003423 92 ALFGEKRVKLFELNFEL----------------------SPNSQYQPETCVN---------L--SLVQSLPRLSHWVFDV 138 (821)
Q Consensus 92 ~~~g~~~v~i~~~~~~~----------------------~~~~~~~~~~~~~---------~--~~~~~~~~h~~~I~~~ 138 (821)
++.|++++.+...+.+- .++.+|.+...-. . .....+. +++.-..+
T Consensus 137 ~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~I 215 (928)
T PF04762_consen 137 LVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRI 215 (928)
T ss_pred EEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEE
Confidence 77888888876543211 0011111100000 0 0011222 45566778
Q ss_pred EEeecCCCCCEEEEEEC------CCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee---CCEEEEEE
Q 003423 139 CFLKVCNGNRSLAIGCS------DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI---YNEIIVWK 209 (821)
Q Consensus 139 ~~~~~~~~~~~l~t~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~---dg~i~vwd 209 (821)
+|-. ||+++|+.+. -+.+|||+-+ |.. .....+....--++++ -|.|++||+.-. ...|.+|.
T Consensus 216 SWRG---DG~yFAVss~~~~~~~~R~iRVy~Re-G~L-~stSE~v~gLe~~l~W---rPsG~lIA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 216 SWRG---DGEYFAVSSVEPETGSRRVIRVYSRE-GEL-QSTSEPVDGLEGALSW---RPSGNLIASSQRLPDRHDVVFFE 287 (928)
T ss_pred EECC---CCcEEEEEEEEcCCCceeEEEEECCC-ceE-EeccccCCCccCCccC---CCCCCEEEEEEEcCCCcEEEEEe
Confidence 8888 9999998764 2579999965 443 2222233222222322 378999998865 34566666
Q ss_pred cccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe--cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeccc
Q 003423 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (821)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~ 287 (821)
-++ ...-.+.+. .....|..|+|++|+..||..-.|. |.+|...+
T Consensus 288 rNG--------------------------------LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 288 RNG--------------------------------LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred cCC--------------------------------cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence 551 111222332 4566799999999999999887766 99999887
Q ss_pred CcccCCCCceeeeceEE-eccceeEEEEEEc---CCEEEEEeCCCeEEEEcCC---------------------Cc----
Q 003423 288 EYWKDSDSIEEVGSSVL-YGHNARVWDCCLT---DSFIITAGEDCTCRVWGSD---------------------GK---- 338 (821)
Q Consensus 288 ~~~~~~~~~~~~~~~~~-~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~~---------------------~~---- 338 (821)
... ..+..+ ......+..+.|+ +..|.....+|.+..++.. |.
T Consensus 335 YHW--------YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lll 406 (928)
T PF04762_consen 335 YHW--------YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLL 406 (928)
T ss_pred CEE--------EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEE
Confidence 542 111122 2223334457787 3566666665665554431 11
Q ss_pred ----------eeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 339 ----------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 339 ----------~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
++..+.-.-..+|..++|++++..+++-..||.|.+|....
T Consensus 407 Tpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 407 TPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred ecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 11111111122689999999988899999999999999744
No 234
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=4.4e-09 Score=113.39 Aligned_cols=200 Identities=6% Similarity=0.060 Sum_probs=126.1
Q ss_pred eccCCCCcEEEEEEeecCCCCCEEEEEEC---CCcEEEEEccCCceeE--EEccCcceeEEEEeeccCCccCeEEEEE-e
Q 003423 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVWDISNSSIIL--EVHSPERCLLYSMKLWGDNLEALRIASG-T 200 (821)
Q Consensus 127 ~~~~h~~~I~~~~~~~~~~~~~~l~t~~~---d~~i~iwd~~~~~~~~--~~~~~~~~~~~s~~~~~~s~~~~~l~sg-~ 200 (821)
.+..+.+.+.+.+|+| +|+.|+..+. +..|.+||+.+++... .+..+... ..+ +||+..|+.. +
T Consensus 193 ~lt~~~~~~~~p~wSP---DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~----~~~---SPDG~~La~~~~ 262 (429)
T PRK03629 193 VVHRSPQPLMSPAWSP---DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGA----PAF---SPDGSKLAFALS 262 (429)
T ss_pred EeecCCCceeeeEEcC---CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCC----eEE---CCCCCEEEEEEc
Confidence 3445667899999999 9998886542 4579999998875432 23333222 233 5888877754 4
Q ss_pred eCC--EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCC-
Q 003423 201 IYN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD- 277 (821)
Q Consensus 201 ~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~D- 277 (821)
.+| .|.+||+. .... ..+..+...+....|+|||+.|+..+++
T Consensus 263 ~~g~~~I~~~d~~---------------------------------tg~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~ 308 (429)
T PRK03629 263 KTGSLNLYVMDLA---------------------------------SGQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQA 308 (429)
T ss_pred CCCCcEEEEEECC---------------------------------CCCE-EEccCCCCCcCceEECCCCCEEEEEeCCC
Confidence 444 58888887 2222 2333445567889999999988777654
Q ss_pred CeEEEE--ecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC---CeEEEEcCCCceeeEeecccCCC
Q 003423 278 RSARIW--EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRG 350 (821)
Q Consensus 278 g~i~iw--d~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d---g~i~iwd~~~~~~~~~~~h~~~~ 350 (821)
+...|| |+.++.. ..+..+........|+ +++++..+.+ ..+.+||+++.....+.... .
T Consensus 309 g~~~Iy~~d~~~g~~-----------~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~ 375 (429)
T PRK03629 309 GRPQVYKVNINGGAP-----------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--L 375 (429)
T ss_pred CCceEEEEECCCCCe-----------EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--C
Confidence 455566 5544432 2333333345567777 4666665433 35788898544455554322 2
Q ss_pred eEEEEEecCCCEEEEEeCCCc---EEEEEcCCcCCC
Q 003423 351 IWRCLYDSLSSLLVTAGFDSA---IKVHQFQAFLPG 383 (821)
Q Consensus 351 i~~l~~~~~~~~l~tg~~dg~---I~iwd~~~~~~~ 383 (821)
.....|+|||+.|+.++.++. +.++++++...+
T Consensus 376 ~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~ 411 (429)
T PRK03629 376 DETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA 411 (429)
T ss_pred CCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeE
Confidence 446789999999999888765 566676654333
No 235
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.16 E-value=6.8e-09 Score=97.06 Aligned_cols=269 Identities=15% Similarity=0.099 Sum_probs=161.1
Q ss_pred CeEEEEECCCCeee--eEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccc
Q 003423 44 SQVLLYDLEAGTLI--RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121 (821)
Q Consensus 44 ~~i~iwd~~t~~~~--~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~ 121 (821)
|.+.+|++..-+.+ ..++......+..|.|+-.. .++. -.++.+-..|+|.+|....... ...
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~----~~g~--~~l~~a~a~G~i~~~r~~~~~s---------s~~ 110 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRE----TDGD--FNLLDAHARGQIQLYRNDEDES---------SVH 110 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeecc----CCcc--ceeeeccccceEEEEeecccee---------eee
Confidence 57899999876544 34554444457777776331 2211 1344445679999998774320 001
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCcee--EEEccCcceeEEEEeeccCCccCeEEEEE
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LEVHSPERCLLYSMKLWGDNLEALRIASG 199 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~s~~~~~~s~~~~~l~sg 199 (821)
++.+...+-..-.-.++.|++ .+..++++..+|.+.+-+....... ++.+.|+ -.+|.+.|... +.+++.+|
T Consensus 111 L~~ls~~ki~~~~~lslD~~~---~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He-~E~Wta~f~~~--~pnlvytG 184 (339)
T KOG0280|consen 111 LRGLSSKKISVVEALSLDIST---SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHE-FEAWTAKFSDK--EPNLVYTG 184 (339)
T ss_pred ecccchhhhhheeeeEEEeec---cCceEEEEcCCCcEEEEecceeeeeecccccccc-eeeeeeecccC--CCceEEec
Confidence 111111111111356788888 8888999999999986554443332 2444444 34777777544 44899999
Q ss_pred eeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEE-EecCCCcEEEEEEcC-CCCEEEEEeCC
Q 003423 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR-LVGHEGSIFRIEWSS-CGSKLVSVSDD 277 (821)
Q Consensus 200 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~I~~l~~s~-~~~~l~s~s~D 277 (821)
+.|+.+..||.+ .....+.. .+-|...|.+|.-+| .+.+++||+.|
T Consensus 185 gDD~~l~~~D~R--------------------------------~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYD 232 (339)
T KOG0280|consen 185 GDDGSLSCWDIR--------------------------------IPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYD 232 (339)
T ss_pred CCCceEEEEEec--------------------------------CCcceeeecceeeecceEEEecCCCCCceEEEeccc
Confidence 999999999998 11222322 456899999999887 56799999999
Q ss_pred CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCC---EEEEEeCCCeEEEEcCC---Cc---eeeEeecccC
Q 003423 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS---FIITAGEDCTCRVWGSD---GK---QLKMIKEHIG 348 (821)
Q Consensus 278 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~---~l~s~~~dg~i~iwd~~---~~---~~~~~~~h~~ 348 (821)
-.|++||.+.... ++ .-..-.+.||.+..+|. .++.+..-.-.++-+.+ .+ .....+.|.+
T Consensus 233 e~i~~~DtRnm~k-------Pl---~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdS 302 (339)
T KOG0280|consen 233 ECIRVLDTRNMGK-------PL---FKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDS 302 (339)
T ss_pred cceeeeehhcccC-------cc---ccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccc
Confidence 9999999996533 11 22223478999999852 22333333335555552 22 2223334433
Q ss_pred CCeEEEEEecCCCEEEEEe-CCCcEE-EEE
Q 003423 349 RGIWRCLYDSLSSLLVTAG-FDSAIK-VHQ 376 (821)
Q Consensus 349 ~~i~~l~~~~~~~~l~tg~-~dg~I~-iwd 376 (821)
-...-.|......|+|++ .|+.++ +|-
T Consensus 303 -l~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 303 -LCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred -eeeccccccccceeeeeeccccceeeeee
Confidence 233333433345678854 466644 563
No 236
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.15 E-value=3.1e-09 Score=101.38 Aligned_cols=219 Identities=14% Similarity=0.199 Sum_probs=155.6
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEcc-CCceeEEEc--cCcceeEEEEeeccCCccCeEEEE
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS-NSSIILEVH--SPERCLLYSMKLWGDNLEALRIAS 198 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~-~~~~~~~~~--~~~~~~~~s~~~~~~s~~~~~l~s 198 (821)
..+++.++||.+.|++...-| ...-+.+.+.|.++|||--. .++.-..+. .|..+ .++.+ ..+...|+.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~---~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~--~~~~y---~~e~~~L~v 85 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIP---KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPC--SAMEY---VSESRRLYV 85 (404)
T ss_pred hhhhhhhcCchhhhhhheecc---CCCCeEEccccceeeeEEeccccccCchhhhhCCCCc--eEeee---eccceEEEE
Confidence 456788999999999999988 77789999999999999543 333322221 22222 22333 356778999
Q ss_pred EeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCC
Q 003423 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (821)
Q Consensus 199 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg 278 (821)
|-..|.+.-+.+... -.+.........|...|..+-|+....++++++.|.
T Consensus 86 g~~ngtvtefs~sed-----------------------------fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk 136 (404)
T KOG1409|consen 86 GQDNGTVTEFALSED-----------------------------FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDK 136 (404)
T ss_pred EEecceEEEEEhhhh-----------------------------hhhcchhhhhhhhhcceeeEEecCCceeEEEecccc
Confidence 999999998877610 012334445567888999999988888888888887
Q ss_pred eEEEEecccCccc---------------------------------CCCCceeeeceEEeccceeEEEEEEc--CCEEEE
Q 003423 279 SARIWEVRAEYWK---------------------------------DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT 323 (821)
Q Consensus 279 ~i~iwd~~~~~~~---------------------------------~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s 323 (821)
.+.---.+.+... .......+ .++.+|...+.+++|. +..+++
T Consensus 137 ~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i--~~~~~h~~~~~~l~Wd~~~~~LfS 214 (404)
T KOG1409|consen 137 QFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLI--TTFNGHTGEVTCLKWDPGQRLLFS 214 (404)
T ss_pred ceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceE--EEEcCcccceEEEEEcCCCcEEEe
Confidence 6532222111110 00001111 5778899999999998 589999
Q ss_pred EeCCCeEEEEcCCC--ceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCc
Q 003423 324 AGEDCTCRVWGSDG--KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (821)
Q Consensus 324 ~~~dg~i~iwd~~~--~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~ 380 (821)
+.+|..+.+||+-+ .....+.+|.+ .|..+..-+.-+.+.+++.||.|.+|+++..
T Consensus 215 g~~d~~vi~wdigg~~g~~~el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 215 GASDHSVIMWDIGGRKGTAYELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ccccCceEEEeccCCcceeeeeccchh-hhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 99999999999943 34556778887 4888888888899999999999999999653
No 237
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=2.1e-08 Score=102.21 Aligned_cols=296 Identities=16% Similarity=0.159 Sum_probs=177.4
Q ss_pred CCCCcceeeccce-----eeeeeEEEEEeccCCCCCCcceEEe-----------ecCCeEEEEECCCCeeeeEEEeeccc
Q 003423 3 KKDLSEWRLDVGQ-----YLGEISALCFVHLPSHLSSLPFLLA-----------GSGSQVLLYDLEAGTLIRPFQVFHGI 66 (821)
Q Consensus 3 ~~~i~~w~~~~~~-----~~~~Vt~l~~~~~p~~~~~~~~l~~-----------g~~~~i~iwd~~t~~~~~~~~~~~~~ 66 (821)
+..++|.+..++. ....+.+|.|+ |. +.+|.+ ++...+++|+++++.....++....
T Consensus 54 ~~~v~i~~~~~~~~~lt~~~~~~~~L~fS--P~----g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q- 126 (566)
T KOG2315|consen 54 NQVVKVFEIATLKVVLCVELKKTYDLLFS--PK----GNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQ- 126 (566)
T ss_pred CCeEEEEEccCCcEEEEeccceeeeeeec--cc----ccccccccccccccCCCCCCCceeeeeeccceehhheehhhh-
Confidence 3456666666663 22367899999 87 566665 1136789999999766666654332
Q ss_pred cEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCC
Q 003423 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (821)
Q Consensus 67 ~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~ 146 (821)
.-...+|+.+ +.+.+---.+.+.+|++..-. ...+. -|...|..+.++|. +.
T Consensus 127 ~~W~~qfs~d-----------Esl~arlv~nev~f~~~~~f~--------------~~~~k--l~~~~i~~f~lSpg-p~ 178 (566)
T KOG2315|consen 127 NGWVPQFSID-----------ESLAARLVSNEVQFYDLGSFK--------------TIQHK--LSVSGITMLSLSPG-PE 178 (566)
T ss_pred cCcccccccc-----------hhhhhhhhcceEEEEecCCcc--------------ceeee--eeccceeeEEecCC-CC
Confidence 2245555533 234454567899999987432 12222 34677999999981 12
Q ss_pred CCEEEE-----EECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCC-ccCeEE-EEEeeCC---------EEEEEEc
Q 003423 147 NRSLAI-----GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDN-LEALRI-ASGTIYN---------EIIVWKV 210 (821)
Q Consensus 147 ~~~l~t-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s-~~~~~l-~sg~~dg---------~i~vwd~ 210 (821)
...+|+ .+.-..|+||..........+....--...++.+.++. ..+.++ ++...|. ++++.+.
T Consensus 179 ~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t 258 (566)
T KOG2315|consen 179 PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT 258 (566)
T ss_pred CceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEe
Confidence 234554 35567899998763322111110000001111111111 122233 3333332 2444443
Q ss_pred ccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEE--eCCCeEEEEecccC
Q 003423 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV--SDDRSARIWEVRAE 288 (821)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~--s~Dg~i~iwd~~~~ 288 (821)
+ .......+ .-+++|.++.|+|+++.++.+ -.--.+.|+|++..
T Consensus 259 ~---------------------------------g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~ 304 (566)
T KOG2315|consen 259 Q---------------------------------GESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK 304 (566)
T ss_pred c---------------------------------CceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC
Confidence 3 11222222 247999999999999876544 44567889988753
Q ss_pred cccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC---CeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCE
Q 003423 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (821)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d---g~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~ 362 (821)
- .+.--.++-.++-|+ +++++.+|.+ |.+-+||+ +.+++.++.... -+-..|+|||.+
T Consensus 305 ~-------------v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~---tt~~eW~PdGe~ 368 (566)
T KOG2315|consen 305 P-------------VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN---TTVFEWSPDGEY 368 (566)
T ss_pred E-------------eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC---ceEEEEcCCCcE
Confidence 2 233334555677787 5788887755 79999999 666777766543 456799999999
Q ss_pred EEEEeC------CCcEEEEEcCCcCCC
Q 003423 363 LVTAGF------DSAIKVHQFQAFLPG 383 (821)
Q Consensus 363 l~tg~~------dg~I~iwd~~~~~~~ 383 (821)
++|+.. |+.++||++.+..+.
T Consensus 369 flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 369 FLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred EEEEeccccEEecCCeEEEEecCceee
Confidence 999873 788999999875443
No 238
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.09 E-value=2.2e-08 Score=95.67 Aligned_cols=239 Identities=13% Similarity=0.103 Sum_probs=142.3
Q ss_pred CCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce-----eEEEccCcc--ee---------EEEEeeccCCccCeE
Q 003423 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-----ILEVHSPER--CL---------LYSMKLWGDNLEALR 195 (821)
Q Consensus 132 ~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~--~~---------~~s~~~~~~s~~~~~ 195 (821)
.+-|.++.|.. .|.+||||..+|.|.++.-..... ...++.|+. .. +..+++.. ..+...
T Consensus 25 adiis~vef~~---~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~-~~n~a~ 100 (433)
T KOG1354|consen 25 ADIISAVEFDH---YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD-DGNLAE 100 (433)
T ss_pred hcceeeEEeec---ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecC-CCCccE
Confidence 46799999999 999999999999999997653321 222322221 11 11223222 234556
Q ss_pred EEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCC--cceeeecccccceeeEEEE-ecCCCcEEEEEEcCCCCEEE
Q 003423 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD--FKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKLV 272 (821)
Q Consensus 196 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~s~~~~~l~ 272 (821)
+...+.|.+|++|.+......+.....+.....+.... +..+.-.+......+...+ .+|.--|++|.++.|++.++
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l 180 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL 180 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence 77778999999999984433221100000000000000 1111111111122233332 47999999999999999999
Q ss_pred EEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC---CEEEEEeCCCeEEEEcCCCc-----eeeEee
Q 003423 273 SVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGSDGK-----QLKMIK 344 (821)
Q Consensus 273 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~---~~l~s~~~dg~i~iwd~~~~-----~~~~~~ 344 (821)
|+ +|=.|.+|++.-... +.++--++|..+..-+.-|++..|+| +.++-.+..|+|++-|+... ..+.+.
T Consensus 181 SA-DdLRINLWnlei~d~--sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 181 SA-DDLRINLWNLEIIDQ--SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred ec-cceeeeeccccccCC--ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 86 567899999865332 11122222333344455688888985 78888889999999998421 111111
Q ss_pred ccc-----------CCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 345 EHI-----------GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 345 ~h~-----------~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
... -..|..+.|+++|+++++-.. -+|++||++
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN 301 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence 110 024778899999999998764 589999984
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.05 E-value=1.8e-08 Score=95.20 Aligned_cols=112 Identities=14% Similarity=0.320 Sum_probs=84.0
Q ss_pred CCcEEEEEEeecCCCCCEEEEE--ECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee---CCEEE
Q 003423 132 SHWVFDVCFLKVCNGNRSLAIG--CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI---YNEII 206 (821)
Q Consensus 132 ~~~I~~~~~~~~~~~~~~l~t~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~---dg~i~ 206 (821)
.++|.+++|+| +++.+|+. ..++.|.+||+. ++.+..+.... ...+.+ +|++.+|+.|+. .|.|.
T Consensus 59 ~~~I~~~~WsP---~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~---~n~i~w---sP~G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 59 EGPIHDVAWSP---NGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQP---RNTISW---SPDGRFLVLAGFGNLNGDLE 128 (194)
T ss_pred CCceEEEEECc---CCCEEEEEEccCCcccEEEcCc-ccEeEeecCCC---ceEEEE---CCCCCEEEEEEccCCCcEEE
Confidence 35699999999 99887655 356799999996 66666665332 223343 689999998875 46799
Q ss_pred EEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeC------CCeE
Q 003423 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD------DRSA 280 (821)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~------Dg~i 280 (821)
+||.. +.+.+.... |. .+..++|+|+|++|+++.. |..+
T Consensus 129 ~wd~~---------------------------------~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~ 173 (194)
T PF08662_consen 129 FWDVR---------------------------------KKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGF 173 (194)
T ss_pred EEECC---------------------------------CCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccE
Confidence 99998 556666543 33 4789999999999998864 7889
Q ss_pred EEEecccC
Q 003423 281 RIWEVRAE 288 (821)
Q Consensus 281 ~iwd~~~~ 288 (821)
+||+....
T Consensus 174 ~Iw~~~G~ 181 (194)
T PF08662_consen 174 KIWSFQGR 181 (194)
T ss_pred EEEEecCe
Confidence 99998654
No 240
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=7.5e-08 Score=103.94 Aligned_cols=234 Identities=14% Similarity=0.057 Sum_probs=142.0
Q ss_pred CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE-E--cCCeEEEEEEeecCCCCCCCCCcccc
Q 003423 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-F--GEKRVKLFELNFELSPNSQYQPETCV 120 (821)
Q Consensus 44 ~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~-~--g~~~v~i~~~~~~~~~~~~~~~~~~~ 120 (821)
..|.++|.+.+.. +.+.. ....+....|+|++ + .++.+ . ++..+.+|++..+.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~-~~~~~~~p~wSPDG-------~---~la~~s~~~g~~~i~i~dl~~G~------------ 234 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHR-SPQPLMSPAWSPDG-------S---KLAYVTFESGRSALVIQTLANGA------------ 234 (429)
T ss_pred eeEEEEcCCCCCC-EEeec-CCCceeeeEEcCCC-------C---EEEEEEecCCCcEEEEEECCCCC------------
Confidence 3799999875543 33332 23368889999664 2 23322 2 34578888876432
Q ss_pred ccceeeeccCCCCcEEEEEEeecCCCCCEEEEE-ECCC--cEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEE
Q 003423 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (821)
Q Consensus 121 ~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (821)
.+.+..++++ +...+|+| +|+.|+.. +.++ .|.+||+.+++..+....+. ......+ +||+..|+
T Consensus 235 -~~~l~~~~~~---~~~~~~SP---DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~--~~~~~~w---SPDG~~I~ 302 (429)
T PRK03629 235 -VRQVASFPRH---NGAPAFSP---DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS--NNTEPTW---FPDSQNLA 302 (429)
T ss_pred -eEEccCCCCC---cCCeEECC---CCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCC--CcCceEE---CCCCCEEE
Confidence 1233334443 44689999 99988754 4444 48889998876543322221 2233344 58888776
Q ss_pred EEee-CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeC
Q 003423 198 SGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (821)
Q Consensus 198 sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~ 276 (821)
..+. ++...+|.+... .. ....+..+........|+|||++|+..+.
T Consensus 303 f~s~~~g~~~Iy~~d~~-------------------------------~g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 303 YTSDQAGRPQVYKVNIN-------------------------------GG-APQRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred EEeCCCCCceEEEEECC-------------------------------CC-CeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence 6554 455566654300 11 12233334445667899999999877654
Q ss_pred C---CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCe---EEEEcCCCceeeEeecccC
Q 003423 277 D---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT---CRVWGSDGKQLKMIKEHIG 348 (821)
Q Consensus 277 D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~---i~iwd~~~~~~~~~~~h~~ 348 (821)
+ ..|.+||+.++.. + .+.. ........|+ +..|+.++.++. +.+++++|+....+..|.+
T Consensus 351 ~~g~~~I~~~dl~~g~~------~-----~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~ 418 (429)
T PRK03629 351 NGGQQHIAKQDLATGGV------Q-----VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG 418 (429)
T ss_pred cCCCceEEEEECCCCCe------E-----EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCC
Confidence 3 3588889877654 1 2221 1122345676 577888877764 6777888988888888777
Q ss_pred CCeEEEEEec
Q 003423 349 RGIWRCLYDS 358 (821)
Q Consensus 349 ~~i~~l~~~~ 358 (821)
.+...+|+|
T Consensus 419 -~~~~p~Wsp 427 (429)
T PRK03629 419 -QVKFPAWSP 427 (429)
T ss_pred -CcCCcccCC
Confidence 577888876
No 241
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=2.3e-08 Score=108.41 Aligned_cols=199 Identities=15% Similarity=0.062 Sum_probs=123.0
Q ss_pred eeccCCCCcEEEEEEeecCCCCCEEEEEEC---CCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEE-EEee
Q 003423 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTI 201 (821)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~ 201 (821)
+.+..+...+.+.+|+| +|+.|+..+. +..|.+||+.+++... +.... ....+..+ ++|+..|+ +.+.
T Consensus 197 ~~lt~~~~~v~~p~wSp---Dg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~-g~~~~~~~---SpDG~~l~~~~s~ 268 (433)
T PRK04922 197 QTILRSAEPILSPAWSP---DGKKLAYVSFERGRSAIYVQDLATGQREL-VASFR-GINGAPSF---SPDGRRLALTLSR 268 (433)
T ss_pred eEeecCCCccccccCCC---CCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCC-CCccCceE---CCCCCEEEEEEeC
Confidence 44556777899999999 9999887764 3469999998876532 22111 11223333 57887665 4455
Q ss_pred CC--EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeC-CC
Q 003423 202 YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR 278 (821)
Q Consensus 202 dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~-Dg 278 (821)
+| .|++||+. .+. ...+..|.......+|+|||++|+.+++ ++
T Consensus 269 ~g~~~Iy~~d~~---------------------------------~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g 314 (433)
T PRK04922 269 DGNPEIYVMDLG---------------------------------SRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG 314 (433)
T ss_pred CCCceEEEEECC---------------------------------CCC-eEECccCCCCccceEECCCCCEEEEEECCCC
Confidence 55 58888887 222 2334455555677899999998887764 45
Q ss_pred e--EEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC-C--eEEEEcCCCceeeEeecccCCCe
Q 003423 279 S--ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED-C--TCRVWGSDGKQLKMIKEHIGRGI 351 (821)
Q Consensus 279 ~--i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~h~~~~i 351 (821)
. |.++|+.+++. ..+..+.......+|+ +++++..+.+ + .|.+||+.+.....+.. .. ..
T Consensus 315 ~~~iy~~dl~~g~~-----------~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~-~~-~~ 381 (433)
T PRK04922 315 RPQIYRVAASGGSA-----------ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTP-GS-LD 381 (433)
T ss_pred CceEEEEECCCCCe-----------EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCC-CC-CC
Confidence 5 55556555433 1222222334457787 4666655433 2 68999985444444442 22 24
Q ss_pred EEEEEecCCCEEEEEeCC---CcEEEEEcCC
Q 003423 352 WRCLYDSLSSLLVTAGFD---SAIKVHQFQA 379 (821)
Q Consensus 352 ~~l~~~~~~~~l~tg~~d---g~I~iwd~~~ 379 (821)
....|+|+|++|+..+.+ +.|.+++.++
T Consensus 382 ~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 382 ESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 567899999988776653 3466666654
No 242
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.03 E-value=1.4e-09 Score=113.40 Aligned_cols=287 Identities=17% Similarity=0.224 Sum_probs=186.9
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCC-CeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA-GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t-~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
..+++.++..+ |. ++..++|..-| +.|.|+.. +.+-+-+.....-.|...+|++.. .. +..++.+
T Consensus 23 v~~~~~a~si~--p~---grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~----a~----~~wiVst 88 (1081)
T KOG0309|consen 23 VDGGFNAVSIN--PS---GRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHP----AK----PYWIVST 88 (1081)
T ss_pred ecCcccceeec--cc---cchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCC----CC----ceeEEec
Confidence 34667888888 87 34444444433 67777764 455555554445557777887542 11 4678888
Q ss_pred cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce-eEEE
Q 003423 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-ILEV 173 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~-~~~~ 173 (821)
..+...+|++..... -.....+.||...|+++.|+| .....||+++.|-.+..||+.+... +...
T Consensus 89 s~qkaiiwnlA~ss~------------~aIef~lhghsraitd~n~~~--q~pdVlatcsvdt~vh~wd~rSp~~p~ys~ 154 (1081)
T KOG0309|consen 89 SNQKAIIWNLAKSSS------------NAIEFVLHGHSRAITDINFNP--QHPDVLATCSVDTYVHAWDMRSPHRPFYST 154 (1081)
T ss_pred CcchhhhhhhhcCCc------------cceEEEEecCccceeccccCC--CCCcceeeccccccceeeeccCCCcceeee
Confidence 889999999985541 245567889999999999998 3557899999999999999886543 2222
Q ss_pred c---cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEE
Q 003423 174 H---SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (821)
Q Consensus 174 ~---~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (821)
. .....+-|. -.+...+| .+..+.|.+||.+ ....++.
T Consensus 155 ~~w~s~asqVkwn------yk~p~vla-sshg~~i~vwd~r--------------------------------~gs~pl~ 195 (1081)
T KOG0309|consen 155 SSWRSAASQVKWN------YKDPNVLA-SSHGNDIFVWDLR--------------------------------KGSTPLC 195 (1081)
T ss_pred ecccccCceeeec------ccCcchhh-hccCCceEEEecc--------------------------------CCCcceE
Confidence 1 111112222 13444444 4455789999998 2456788
Q ss_pred EEecCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC---CEEE----
Q 003423 251 RLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFII---- 322 (821)
Q Consensus 251 ~~~~h~~~I~~l~~s~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~---~~l~---- 322 (821)
.+++|...|+++.|+.- ...+.+++.||+|+.||...... .. ........+||--++.| .+++
T Consensus 196 s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~-----e~----~~~vtt~~piw~~r~~Pfg~g~~~mp~~ 266 (1081)
T KOG0309|consen 196 SLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT-----ES----KRTVTTNFPIWRGRYLPFGEGYCIMPMV 266 (1081)
T ss_pred EecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc-----cc----ceeccccCcceeccccccCceeEecccc
Confidence 89999999999999863 34689999999999999876532 00 12233344555555441 1111
Q ss_pred ------EEeCCCeEEEEcC--CCceeeEeecccCCCeEEEEEec----------CCCEEEEEeCCCcEEEEEcCC
Q 003423 323 ------TAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDS----------LSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 323 ------s~~~dg~i~iwd~--~~~~~~~~~~h~~~~i~~l~~~~----------~~~~l~tg~~dg~I~iwd~~~ 379 (821)
---.+..-..|+. ..+.+.++.+|... |....|-. ..-.|+|=+.|..+++|.+..
T Consensus 267 G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~-V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 267 GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDV-VLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCeeeeeccccchhhhhccccCCcceeeecCcchH-HHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 1122233344554 24688999999873 54443321 124799999999999999854
No 243
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=4.1e-08 Score=106.67 Aligned_cols=200 Identities=11% Similarity=0.051 Sum_probs=127.9
Q ss_pred eeeccCCCCcEEEEEEeecCCCCCEEEEEEC---CCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEE-EEe
Q 003423 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGT 200 (821)
Q Consensus 125 ~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~ 200 (821)
.+.+..|...+.+.+|+| +|+.|+..+. +..|.+||+.+++.. .+..... ...+..+ +||+..|+ +.+
T Consensus 194 ~~~lt~~~~~v~~p~wSp---DG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g-~~~~~~~---SPDG~~la~~~~ 265 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSP---NRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPG-MTFAPRF---SPDGRKVVMSLS 265 (435)
T ss_pred cEEEecCCCCeEeeEECC---CCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCC-cccCcEE---CCCCCEEEEEEe
Confidence 345667888999999999 9998887653 468999999887653 2222211 2233333 57887665 555
Q ss_pred eCCE--EEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeC-C
Q 003423 201 IYNE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-D 277 (821)
Q Consensus 201 ~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~-D 277 (821)
.++. |.+||+. ... ...+..+.+......|+|||+.|+..++ +
T Consensus 266 ~~g~~~Iy~~d~~---------------------------------~~~-~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~ 311 (435)
T PRK05137 266 QGGNTDIYTMDLR---------------------------------SGT-TTRLTDSPAIDTSPSYSPDGSQIVFESDRS 311 (435)
T ss_pred cCCCceEEEEECC---------------------------------CCc-eEEccCCCCccCceeEcCCCCEEEEEECCC
Confidence 5555 6666765 222 2344556666778999999998887764 3
Q ss_pred C--eEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC---CeEEEEcCCCceeeEeecccCCC
Q 003423 278 R--SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRG 350 (821)
Q Consensus 278 g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d---g~i~iwd~~~~~~~~~~~h~~~~ 350 (821)
+ .|.+||+..+.. ..+..+...+....|+ ++.|+....+ ..|.+|++++.....+.. .. .
T Consensus 312 g~~~Iy~~d~~g~~~-----------~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~-~~-~ 378 (435)
T PRK05137 312 GSPQLYVMNADGSNP-----------RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTS-GF-L 378 (435)
T ss_pred CCCeEEEEECCCCCe-----------EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccC-CC-C
Confidence 3 577778766543 2333334455667787 4666655433 367888886655555443 22 3
Q ss_pred eEEEEEecCCCEEEEEeCC------CcEEEEEcCC
Q 003423 351 IWRCLYDSLSSLLVTAGFD------SAIKVHQFQA 379 (821)
Q Consensus 351 i~~l~~~~~~~~l~tg~~d------g~I~iwd~~~ 379 (821)
+....|+|+|+.|+..+.+ ..+.++++++
T Consensus 379 ~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 379 VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 6788999999988765543 2466667654
No 244
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.02 E-value=3e-08 Score=93.66 Aligned_cols=113 Identities=19% Similarity=0.315 Sum_probs=84.7
Q ss_pred CCCcEEEEEEcCCCCEEEEE--eCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC---
Q 003423 255 HEGSIFRIEWSSCGSKLVSV--SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED--- 327 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~--s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d--- 327 (821)
..++|.+++|+|+|+.+|.+ ..++.|.+||++... ...-+...+..+.|+ ++++++++.+
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~-------------i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~ 124 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKK-------------IFSFGTQPRNTISWSPDGRFLVLAGFGNLN 124 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccE-------------eEeecCCCceEEEECCCCCEEEEEEccCCC
Confidence 45679999999999987544 467899999997322 222235667889999 5888888744
Q ss_pred CeEEEEcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeC------CCcEEEEEcCCcCCC
Q 003423 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF------DSAIKVHQFQAFLPG 383 (821)
Q Consensus 328 g~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~------dg~I~iwd~~~~~~~ 383 (821)
|.+.+||. +.+.+.+.. |. .++.++|+|+|++++++.. |..++||++.++.+.
T Consensus 125 G~l~~wd~~~~~~i~~~~-~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~ 184 (194)
T PF08662_consen 125 GDLEFWDVRKKKKISTFE-HS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLY 184 (194)
T ss_pred cEEEEEECCCCEEeeccc-cC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeE
Confidence 67999999 455555543 33 3789999999999999874 788999999775443
No 245
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=6.1e-07 Score=93.89 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=120.0
Q ss_pred CccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCC
Q 003423 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS 269 (821)
Q Consensus 190 s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~ 269 (821)
+.+..+||.|+.||.++|-.+.+........+ .. .......-+++.||.++|.-+.|+.+.+
T Consensus 23 Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g--la----------------a~snLsmNQtLeGH~~sV~vvTWNe~~Q 84 (1189)
T KOG2041|consen 23 NKESGYIACGGADGLLKVLKLGTDTTDLNKSG--LA----------------AASNLSMNQTLEGHNASVMVVTWNENNQ 84 (1189)
T ss_pred cccCCeEEeccccceeEEEEccccCCcccccc--cc----------------cccccchhhhhccCcceEEEEEeccccc
Confidence 46788999999999999999874322111111 00 0013445678899999999999999999
Q ss_pred EEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCceeeE--eec
Q 003423 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKM--IKE 345 (821)
Q Consensus 270 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~~~~--~~~ 345 (821)
.|-|...+|.|.+|-+-.+.. .++. .-.-.++-|.+++|. +..+....+||.|.+=.++|..+-- +++
T Consensus 85 KLTtSDt~GlIiVWmlykgsW-----~EEM---iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg 156 (1189)
T KOG2041|consen 85 KLTTSDTSGLIIVWMLYKGSW-----CEEM---INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG 156 (1189)
T ss_pred cccccCCCceEEEEeeecccH-----HHHH---hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch
Confidence 999999999999999887755 3322 223345668889998 7888888999999888887655432 222
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCc
Q 003423 346 HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (821)
Q Consensus 346 h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~ 380 (821)
. ....+.|++|.+.++.+-.+|.+.++|.++.
T Consensus 157 ~---~l~hv~ws~D~~~~Lf~~ange~hlydnqgn 188 (1189)
T KOG2041|consen 157 Q---LLAHVLWSEDLEQALFKKANGETHLYDNQGN 188 (1189)
T ss_pred h---eccceeecccHHHHHhhhcCCcEEEeccccc
Confidence 2 3557889999999998999999999998664
No 246
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=7.1e-08 Score=104.25 Aligned_cols=194 Identities=11% Similarity=0.002 Sum_probs=120.8
Q ss_pred eeccCCCCcEEEEEEeecCCCCCEEEEEECC---CcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEE-EEee
Q 003423 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTI 201 (821)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~ 201 (821)
..+..+...+.+.+|+| +|+.|+..+.+ ..|.+||+.+++.......+ . ...+..+ +||+..|+ +.+.
T Consensus 189 ~~l~~~~~~v~~p~wSP---DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-g-~~~~~~~---SPDG~~la~~~~~ 260 (427)
T PRK02889 189 QSALSSPEPIISPAWSP---DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-G-SNSAPAW---SPDGRTLAVALSR 260 (427)
T ss_pred eEeccCCCCcccceEcC---CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-C-CccceEE---CCCCCEEEEEEcc
Confidence 34556778899999999 99998877643 35999999888654321111 1 1223333 58887776 5677
Q ss_pred CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeC-CCeE
Q 003423 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSA 280 (821)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~-Dg~i 280 (821)
+|...+|.+.. .......+..|.+......|+|||+.|+..++ ++..
T Consensus 261 ~g~~~Iy~~d~--------------------------------~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~ 308 (427)
T PRK02889 261 DGNSQIYTVNA--------------------------------DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAP 308 (427)
T ss_pred CCCceEEEEEC--------------------------------CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCc
Confidence 88878887651 11123344455556677899999998876654 4677
Q ss_pred EEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCC---eEEEEcCCCceeeEeecccCCCeEEEE
Q 003423 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEHIGRGIWRCL 355 (821)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg---~i~iwd~~~~~~~~~~~h~~~~i~~l~ 355 (821)
.||.+..... ..+ .+..+........|+ +++|+..+.++ .|.+||+.+.....+... . ......
T Consensus 309 ~Iy~~~~~~g----~~~-----~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-~-~~~~p~ 377 (427)
T PRK02889 309 QIYRMPASGG----AAQ-----RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT-T-RDESPS 377 (427)
T ss_pred EEEEEECCCC----ceE-----EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-C-CccCce
Confidence 7776643211 011 121122223356677 56777665544 699999954444444433 2 246789
Q ss_pred EecCCCEEEEEeCCC
Q 003423 356 YDSLSSLLVTAGFDS 370 (821)
Q Consensus 356 ~~~~~~~l~tg~~dg 370 (821)
|+|+++.|+..+.++
T Consensus 378 ~spdg~~l~~~~~~~ 392 (427)
T PRK02889 378 FAPNGRYILYATQQG 392 (427)
T ss_pred ECCCCCEEEEEEecC
Confidence 999999888777554
No 247
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.99 E-value=5.9e-05 Score=88.05 Aligned_cols=359 Identities=12% Similarity=0.104 Sum_probs=195.4
Q ss_pred CCCcEEEEEEeecCCCCCEEEEEECCCcEEEE----EccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEE
Q 003423 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVW----DISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEII 206 (821)
Q Consensus 131 h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iw----d~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~ 206 (821)
..+.|.++.+.+ +...|+.+..+|.|.+. +..+.. .+.-+...+.+.++++ |||+.+|+..+.+|++.
T Consensus 74 ~~~~ivs~~yl~---d~~~l~~~~~~Gdi~~~~~~~~~~~~~--~E~VG~vd~GI~a~~W---SPD~Ella~vT~~~~l~ 145 (928)
T PF04762_consen 74 PNDKIVSFQYLA---DSESLCIALASGDIILVREDPDPDEDE--IEIVGSVDSGILAASW---SPDEELLALVTGEGNLL 145 (928)
T ss_pred CCCcEEEEEecc---CCCcEEEEECCceEEEEEccCCCCCce--eEEEEEEcCcEEEEEE---CCCcCEEEEEeCCCEEE
Confidence 457899999999 88889999999999999 444332 2222233333445554 69999999999999999
Q ss_pred EEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCC-----CcEEEEEEcCCCCEE-EEEeCCCeE
Q 003423 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-----GSIFRIEWSSCGSKL-VSVSDDRSA 280 (821)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~I~~l~~s~~~~~l-~s~s~Dg~i 280 (821)
+-+.. ..++.+..-+. ..-..|-|-....++ =+++.. .-
T Consensus 146 ~mt~~----------------------------------fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~-aa 190 (928)
T PF04762_consen 146 LMTRD----------------------------------FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKA-AA 190 (928)
T ss_pred EEecc----------------------------------ceEEEEeecCccccCCCceeeeccCcccCccCcchhhh-hh
Confidence 87644 11121111110 011112221111111 000000 00
Q ss_pred EEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeC---C---CeEEEEcCCCceeeEeecccCCCeE
Q 003423 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE---D---CTCRVWGSDGKQLKMIKEHIGRGIW 352 (821)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~h~~~~i~ 352 (821)
+ ..++... . .+....+. +...-..++|. +.++++.+. + ..+|+|+-+|....+-..-.+ --.
T Consensus 191 ~--~~~~p~~-----~-~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~g-Le~ 260 (928)
T PF04762_consen 191 R--QLRDPTV-----P-KVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDG-LEG 260 (928)
T ss_pred h--hccCCCC-----C-ccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCC-ccC
Confidence 0 0000000 0 00001122 33344567787 467766653 2 589999988765544432222 234
Q ss_pred EEEEecCCCEEEEEeC---CCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeec
Q 003423 353 RCLYDSLSSLLVTAGF---DSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS 429 (821)
Q Consensus 353 ~l~~~~~~~~l~tg~~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~ 429 (821)
+++|-|.|++||+... ...|.+|.-++-... -|.++ +......|..++|++
T Consensus 261 ~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhg----------------eF~l~----------~~~~~~~v~~l~Wn~ 314 (928)
T PF04762_consen 261 ALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHG----------------EFTLR----------FDPEEEKVIELAWNS 314 (928)
T ss_pred CccCCCCCCEEEEEEEcCCCcEEEEEecCCcEee----------------eEecC----------CCCCCceeeEEEECC
Confidence 6899999999998764 344556655442111 11111 112245689999999
Q ss_pred CCeEEEEecCCcEEEEEecCCCcceeeE--eeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCC
Q 003423 430 EDTLYIATNHGYLYHTKLCDMDSVNWNK--ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHT 507 (821)
Q Consensus 430 ~~~~l~~~~~g~~~~~~i~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~ 507 (821)
++.+|+..-...+ .+|...+..|-. .........+..+.+.+ .+...+.+.+.+|.+..+++.-
T Consensus 315 ds~iLAv~~~~~v---qLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp-------e~p~~L~v~t~~g~~~~~~~~~---- 380 (928)
T PF04762_consen 315 DSEILAVWLEDRV---QLWTRSNYHWYLKQEIRFSSSESVNFVKWDP-------EKPLRLHVLTSNGQYEIYDFAW---- 380 (928)
T ss_pred CCCEEEEEecCCc---eEEEeeCCEEEEEEEEEccCCCCCCceEECC-------CCCCEEEEEecCCcEEEEEEEE----
Confidence 9999988766565 466666666643 22222222222233333 3456777777778887776432
Q ss_pred CcceeEEeeccCccceeeeeEEeecC-CCeEEEEECCCC-cEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEE
Q 003423 508 PQLSFTFTWSAGIERQLLGTYWCKSL-GHRFIFTADPKG-RLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMC 585 (821)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 585 (821)
....++.. .+ |...+++. || .+++-.+... ..++ ....+.-.....|.+
T Consensus 381 -----~v~~s~~~-----------~~~D~g~vaVI--DG~~lllTpf~~a--~VPP---------PMs~~~l~~~~~v~~ 431 (928)
T PF04762_consen 381 -----DVSRSPGS-----------SPNDNGTVAVI--DGNKLLLTPFRRA--VVPP---------PMSSYELELPSPVND 431 (928)
T ss_pred -----EEEecCCC-----------CccCceEEEEE--eCCeEEEeccccc--CCCc---------hHhceEEcCCCCcEE
Confidence 11111110 11 12233333 33 5666666554 1221 111112234677999
Q ss_pred EEeecCCCEEEEEcCCCcEEEEecCc
Q 003423 586 LDASFEDEVLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 586 l~~s~~~~~L~sgs~dG~i~iw~~~~ 611 (821)
++|++++..+|+-..||.|.+|....
T Consensus 432 vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 432 VAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EEEeCCCCeEEEEECCCCEEEEEecC
Confidence 99999998899999999999998653
No 248
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=7.3e-08 Score=104.56 Aligned_cols=232 Identities=11% Similarity=0.007 Sum_probs=134.9
Q ss_pred CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE---cCCeEEEEEEeecCCCCCCCCCcccc
Q 003423 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF---GEKRVKLFELNFELSPNSQYQPETCV 120 (821)
Q Consensus 44 ~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~---g~~~v~i~~~~~~~~~~~~~~~~~~~ 120 (821)
..|.+||...+. ...+..+ ...+.+..|+|++ + .++.+. +...|.+|++..+.
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~-~~~v~~p~wSpDg-------~---~la~~s~~~~~~~l~~~dl~~g~------------ 239 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRS-AEPILSPAWSPDG-------K---KLAYVSFERGRSAIYVQDLATGQ------------ 239 (433)
T ss_pred EEEEEECCCCCC-ceEeecC-CCccccccCCCCC-------C---EEEEEecCCCCcEEEEEECCCCC------------
Confidence 369999986443 3344433 3357788888653 2 333333 23578888886442
Q ss_pred ccceeeeccCCCCcEEEEEEeecCCCCCEEE-EEECCC--cEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEE
Q 003423 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (821)
Q Consensus 121 ~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~-t~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (821)
.+ .+..+.+...+.+|+| +|+.|+ +.+.++ .|.+||+.+++.. .+..+. ....+..| ++|+..|+
T Consensus 240 -~~---~l~~~~g~~~~~~~Sp---DG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~-~~~~~~~~---spDG~~l~ 307 (433)
T PRK04922 240 -RE---LVASFRGINGAPSFSP---DGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHF-GIDTEPTW---APDGKSIY 307 (433)
T ss_pred -EE---EeccCCCCccCceECC---CCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCC-CCccceEE---CCCCCEEE
Confidence 12 2223334455789999 998775 445555 5999999887643 333221 12233444 57888777
Q ss_pred EEe-eCCE--EEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEE
Q 003423 198 SGT-IYNE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (821)
Q Consensus 198 sg~-~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~ 274 (821)
..+ .+|. |.++++. ... ...+..+.......+|+|+|++|+..
T Consensus 308 f~sd~~g~~~iy~~dl~---------------------------------~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 308 FTSDRGGRPQIYRVAAS---------------------------------GGS-AERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred EEECCCCCceEEEEECC---------------------------------CCC-eEEeecCCCCccCEEECCCCCEEEEE
Confidence 654 4555 4444544 111 11222233344578999999998776
Q ss_pred eCCC---eEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC---CeEEEEcCCCceeeEeecc
Q 003423 275 SDDR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEH 346 (821)
Q Consensus 275 s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d---g~i~iwd~~~~~~~~~~~h 346 (821)
+.++ .|.+||+.+++. ..+. +........|+ ++.++..+.+ +.+.+++.+|.....+..+
T Consensus 354 ~~~~~~~~I~v~d~~~g~~-----------~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~ 421 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSV-----------RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSA 421 (433)
T ss_pred ECCCCceeEEEEECCCCCe-----------EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcccC
Confidence 5443 699999877654 1221 22233456777 4556555543 4577778888777777655
Q ss_pred cCCCeEEEEEec
Q 003423 347 IGRGIWRCLYDS 358 (821)
Q Consensus 347 ~~~~i~~l~~~~ 358 (821)
.+ .+...+|+|
T Consensus 422 ~g-~~~~p~wsp 432 (433)
T PRK04922 422 DG-EVREPAWSP 432 (433)
T ss_pred CC-CCCCCccCC
Confidence 55 366667765
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.97 E-value=1.2e-05 Score=84.45 Aligned_cols=289 Identities=10% Similarity=0.062 Sum_probs=157.5
Q ss_pred CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeC----CCeEEEEcCC---Cc--eeeEeecc
Q 003423 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE----DCTCRVWGSD---GK--QLKMIKEH 346 (821)
Q Consensus 278 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~----dg~i~iwd~~---~~--~~~~~~~h 346 (821)
+.|.+|+++.... .+..+ .. ..-......++++ +++|++..+ ++.|..|+++ ++ .+.+...
T Consensus 13 ~gI~~~~~d~~~g----~l~~~--~~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~- 84 (345)
T PF10282_consen 13 GGIYVFRFDEETG----TLTLV--QT-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS- 84 (345)
T ss_dssp TEEEEEEEETTTT----EEEEE--EE-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-
T ss_pred CcEEEEEEcCCCC----CceEe--ee-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-
Confidence 7888888843321 02211 11 1122233456665 578888877 5799999883 33 2233332
Q ss_pred cCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCc-CCCcccCCccccccCCCcceEEe--ecCCcccceeccCCCCcce
Q 003423 347 IGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSI--KIPNFSEQIRLTDSKSEYV 422 (821)
Q Consensus 347 ~~~~i~~l~~~~~~~~l~tg~-~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i 422 (821)
.+.....++++|++++|+++. .+|.|.+++++.. .+... ...+.. ..++. ........
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~------------~~~~~~~g~g~~~------~rq~~~h~ 146 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEV------------VQTVRHEGSGPNP------DRQEGPHP 146 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEE------------EEEEESEEEESST------TTTSSTCE
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCccccee------------eeecccCCCCCcc------cccccccc
Confidence 233467899999999998887 4899999999542 11000 000000 00110 01112447
Q ss_pred EEEEeecCCeEEEEecCCc--EEEEEecCCCc-ceeeEeeeccCCcceEEEeccCCCCCCCCCCCc-EEEEecCCccEEE
Q 003423 423 RCLHLTSEDTLYIATNHGY--LYHTKLCDMDS-VNWNKILQVSEGMPIICMDLLSNEPKYPCGIDD-WVALGDGKGNMTI 498 (821)
Q Consensus 423 ~~l~f~~~~~~l~~~~~g~--~~~~~i~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~-~l~~g~~~g~i~i 498 (821)
.++.|+|+++++.++..|. ++.+++..... .........+.......+.+.+ +++ ..++...++.|.+
T Consensus 147 H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p--------dg~~~Yv~~e~s~~v~v 218 (345)
T PF10282_consen 147 HQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP--------DGKYAYVVNELSNTVSV 218 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T--------TSSEEEEEETTTTEEEE
T ss_pred eeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC--------CcCEEEEecCCCCcEEE
Confidence 8899999998777765554 55555543321 2111222333344444555544 334 4466777889999
Q ss_pred EEecCCCCCCcceeEEeeccCc-cceeeeeEEeecCCCeEEEEEC-CCCcEEEeeecCCCCcccccCCccceeeeeEEEe
Q 003423 499 VRVVGDVHTPQLSFTFTWSAGI-ERQLLGTYWCKSLGHRFIFTAD-PKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFS 576 (821)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (821)
|++................+.. .......-..++|++++|+++. ..+.|.+|+++... ..+..+..+
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~----------g~l~~~~~~- 287 (345)
T PF10282_consen 219 FDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT----------GTLTLVQTV- 287 (345)
T ss_dssp EEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT----------TTEEEEEEE-
T ss_pred EeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC----------CceEEEEEE-
Confidence 9998332222222222222211 1111233345789999877654 55689999995431 112333333
Q ss_pred cccCceEEEEEeecCCCEEEEEc-CCCcEEEEecCc
Q 003423 577 SCFGARIMCLDASFEDEVLFCGD-LRGNLVLFPLLR 611 (821)
Q Consensus 577 ~~h~~~I~~l~~s~~~~~L~sgs-~dG~i~iw~~~~ 611 (821)
.........++++|+|++|+++. .++.|.+|+++.
T Consensus 288 ~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 288 PTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred eCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 22244478999999999998876 567999998863
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.96 E-value=7.3e-08 Score=99.19 Aligned_cols=143 Identities=13% Similarity=0.175 Sum_probs=113.3
Q ss_pred CCCEEEEEECCCcEEEEEccCCceeEEEc-cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCC
Q 003423 146 GNRSLAIGCSDNSIRVWDISNSSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (821)
Q Consensus 146 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 224 (821)
+...++-|...|.|.+|++..++....+. ..+...+.++.. +.+-..|.+++.|+.+..|+..
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~---~~~~~ciyS~~ad~~v~~~~~~------------- 132 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILD---AQRLGCIYSVGADLKVVYILEK------------- 132 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeec---ccccCceEecCCceeEEEEecc-------------
Confidence 44567888889999999999999988876 223223333322 2456789999999999999998
Q ss_pred cccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEE
Q 003423 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (821)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 304 (821)
....++...+-...+.+++.+|||..|++++ ++|++||+.+.+. + ..+
T Consensus 133 --------------------~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kev-----v-----~~f 180 (541)
T KOG4547|consen 133 --------------------EKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEV-----V-----ITF 180 (541)
T ss_pred --------------------cceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceE-----E-----EEe
Confidence 6777888888889999999999999999987 6899999999876 4 699
Q ss_pred eccceeEEEEEEc-------CCEEE-EEeCCCeEEEEcCC
Q 003423 305 YGHNARVWDCCLT-------DSFII-TAGEDCTCRVWGSD 336 (821)
Q Consensus 305 ~~h~~~i~~v~~~-------~~~l~-s~~~dg~i~iwd~~ 336 (821)
.||.++|.++.|. +.+++ +...+..+.+|-.+
T Consensus 181 tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 181 TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 9999999999986 24444 45566678888773
No 251
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.95 E-value=1.7e-07 Score=87.84 Aligned_cols=112 Identities=17% Similarity=0.268 Sum_probs=88.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcC
Q 003423 259 IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS 335 (821)
Q Consensus 259 I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~ 335 (821)
-.++.|++.+..+++.-.+|.+.+-+...... +.+ +...+|..++|.+.|+ |+.+++||.|+.+..||+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l------e~v--q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~ 195 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVL------EKV--QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDI 195 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeee------eec--ccccccceeeeeeecccCCCceEEecCCCceEEEEEe
Confidence 35688889888899999999998665554332 222 4788999999999998 789999999999999999
Q ss_pred C--CceeeE-eecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEEcCC
Q 003423 336 D--GKQLKM-IKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 336 ~--~~~~~~-~~~h~~~~i~~l~~~~-~~~~l~tg~~dg~I~iwd~~~ 379 (821)
. ++.+.+ .+.|.. +|.+|.-+| ...+++||+.|-.|++||.++
T Consensus 196 R~p~~~i~~n~kvH~~-GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 196 RIPKTFIWHNSKVHTS-GVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred cCCcceeeecceeeec-ceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 4 444433 455666 688888775 567999999999999999864
No 252
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=1.9e-07 Score=101.03 Aligned_cols=235 Identities=11% Similarity=0.014 Sum_probs=133.9
Q ss_pred CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE-c--CCeEEEEEEeecCCCCCCCCCcccc
Q 003423 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-G--EKRVKLFELNFELSPNSQYQPETCV 120 (821)
Q Consensus 44 ~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g--~~~v~i~~~~~~~~~~~~~~~~~~~ 120 (821)
..|.++|.. |.....+... ...+...+|+|++ + .++.+. . ...|.+||+..+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~-~~~v~~p~wSPDG-------~---~la~~s~~~~~~~I~~~dl~~g~------------ 231 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSS-PEPIISPAWSPDG-------T---KLAYVSFESKKPVVYVHDLATGR------------ 231 (427)
T ss_pred cEEEEECCC-CCCceEeccC-CCCcccceEcCCC-------C---EEEEEEccCCCcEEEEEECCCCC------------
Confidence 478888874 4444444433 3368888898663 2 233333 2 2468888886442
Q ss_pred ccceeeeccCCCCcEEEEEEeecCCCCCEEE-EEECCCcEEEEEccC-CceeEEEccCcceeEEEEeeccCCccCeEEEE
Q 003423 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDISN-SSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (821)
Q Consensus 121 ~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~-t~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (821)
.. .+....+.+...+|+| +|+.|+ +.+.++...||.+.. +.....+..+. ....+..+ ++|+..|+.
T Consensus 232 -~~---~l~~~~g~~~~~~~SP---DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~w---SpDG~~l~f 300 (427)
T PRK02889 232 -RR---VVANFKGSNSAPAWSP---DGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSS-GIDTEPFF---SPDGRSIYF 300 (427)
T ss_pred -EE---EeecCCCCccceEECC---CCCEEEEEEccCCCceEEEEECCCCCcEECCCCC-CCCcCeEE---cCCCCEEEE
Confidence 12 2223334567899999 998876 556788777776542 22344443322 12223333 578887765
Q ss_pred Ee-eCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCC
Q 003423 199 GT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (821)
Q Consensus 199 g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~D 277 (821)
.+ ..|...+|.+... ... ...+..+.......+|+|+|++|+..+.+
T Consensus 301 ~s~~~g~~~Iy~~~~~-------------------------------~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 301 TSDRGGAPQIYRMPAS-------------------------------GGA-AQRVTFTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred EecCCCCcEEEEEECC-------------------------------CCc-eEEEecCCCCcCceEECCCCCEEEEEEcc
Confidence 44 4567777776510 111 11111122334467899999999877765
Q ss_pred C---eEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC-Ce--EEEEcCCCceeeEeecccCC
Q 003423 278 R---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED-CT--CRVWGSDGKQLKMIKEHIGR 349 (821)
Q Consensus 278 g---~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d-g~--i~iwd~~~~~~~~~~~h~~~ 349 (821)
+ .|.+||+.+++. ..+.. ........|+ +..|+.++.+ |. +.+.+.+|+....+..+.+
T Consensus 349 ~g~~~I~v~d~~~g~~-----------~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g- 415 (427)
T PRK02889 349 GGAFKLYVQDLATGQV-----------TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGG- 415 (427)
T ss_pred CCcEEEEEEECCCCCe-----------EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCC-
Confidence 4 699999987654 12222 1223566777 3555555543 33 4444556776666665555
Q ss_pred CeEEEEEec
Q 003423 350 GIWRCLYDS 358 (821)
Q Consensus 350 ~i~~l~~~~ 358 (821)
.+...+|+|
T Consensus 416 ~~~~p~wsp 424 (427)
T PRK02889 416 DVREPSWGP 424 (427)
T ss_pred CCCCCccCC
Confidence 366667766
No 253
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.91 E-value=1.4e-06 Score=93.26 Aligned_cols=259 Identities=12% Similarity=0.086 Sum_probs=149.7
Q ss_pred cceEEeecCCeEEEEECCCCeeeeEEEeeccccEE-eEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCC
Q 003423 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLH-GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (821)
Q Consensus 35 ~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~-~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~ 113 (821)
+.+++.+.++.|.-+|..+|+++-+.+.... +. +.... + ..+++...++.+..+|...++
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~--~~~~p~v~--------~----~~v~v~~~~g~l~ald~~tG~----- 126 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDER--LSGGVGAD--------G----GLVFVGTEKGEVIALDAEDGK----- 126 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCC--cccceEEc--------C----CEEEEEcCCCEEEEEECCCCc-----
Confidence 3455555579999999999999887765332 11 11111 1 245555668888888876543
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeE----EEEeeccC
Q 003423 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL----YSMKLWGD 189 (821)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~s~~~~~~ 189 (821)
....... .+.+.+.-.. .+..++.++.++.+..||..+|+.+.+......... .+..+
T Consensus 127 ----------~~W~~~~-~~~~~~~p~v----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--- 188 (377)
T TIGR03300 127 ----------ELWRAKL-SSEVLSPPLV----ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--- 188 (377)
T ss_pred ----------Eeeeecc-CceeecCCEE----ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---
Confidence 2222111 1222221111 234566677899999999999998776654322110 01111
Q ss_pred CccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe-----cCC--CcEEEE
Q 003423 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-----GHE--GSIFRI 262 (821)
Q Consensus 190 s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~--~~I~~l 262 (821)
.+..++.+..+|.+..+|..+++. +.+.. +.. .....+
T Consensus 189 --~~~~v~~~~~~g~v~ald~~tG~~---------------------------------~W~~~~~~~~g~~~~~~~~~~ 233 (377)
T TIGR03300 189 --ADGGVLVGFAGGKLVALDLQTGQP---------------------------------LWEQRVALPKGRTELERLVDV 233 (377)
T ss_pred --ECCEEEEECCCCEEEEEEccCCCE---------------------------------eeeeccccCCCCCchhhhhcc
Confidence 123677788889999999873221 11100 000 000000
Q ss_pred EEcC--CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC-CCce
Q 003423 263 EWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQ 339 (821)
Q Consensus 263 ~~s~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~-~~~~ 339 (821)
.-+| .+..++.++.+|.+..||..+++. . ...... ........++.++.++.||.+..+|. +|+.
T Consensus 234 ~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~-----~------W~~~~~-~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 234 DGDPVVDGGQVYAVSYQGRVAALDLRSGRV-----L------WKRDAS-SYQGPAVDDNRLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred CCccEEECCEEEEEEcCCEEEEEECCCCcE-----E------EeeccC-CccCceEeCCEEEEECCCCeEEEEECCCCcE
Confidence 0011 245777788899999999988754 2 111111 12233445788999999999999999 6776
Q ss_pred eeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 340 LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 340 ~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
+-...........+... .+..|++++.+|.|.++|..+
T Consensus 302 ~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 302 LWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred EEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 65543222211223233 367899999999999999843
No 254
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=5.1e-07 Score=92.37 Aligned_cols=288 Identities=10% Similarity=0.068 Sum_probs=165.3
Q ss_pred ceeeeccCCCCcEEEEEEeecCCCCCEE-EEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee
Q 003423 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (821)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~ 201 (821)
++++.+ +|+..-+.+..+| ||+++ |||...-.|++||+.+..+..+- |-..-+.. |...+.|-..++---.
T Consensus 43 eLiQdf-e~p~ast~ik~s~---DGqY~lAtG~YKP~ikvydlanLSLKFER--hlDae~V~--feiLsDD~SK~v~L~~ 114 (703)
T KOG2321|consen 43 ELIQDF-EMPTASTRIKVSP---DGQYLLATGTYKPQIKVYDLANLSLKFER--HLDAEVVD--FEILSDDYSKSVFLQN 114 (703)
T ss_pred HHHHhc-CCccccceeEecC---CCcEEEEecccCCceEEEEcccceeeeee--ccccccee--EEEeccchhhheEeec
Confidence 334444 4777889999999 99975 67777889999999875543222 21111111 1111122222222223
Q ss_pred CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 003423 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (821)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~ 281 (821)
|..|-+.... + .-..++- ...-..++++.-.--|..++....|.
T Consensus 115 DR~IefHak~----------------------------------G-~hy~~RI-P~~GRDm~y~~~scDly~~gsg~evY 158 (703)
T KOG2321|consen 115 DRTIEFHAKY----------------------------------G-RHYRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVY 158 (703)
T ss_pred Cceeeehhhc----------------------------------C-eeeeeec-CcCCccccccCCCccEEEeecCcceE
Confidence 3333333221 0 0011110 01113455543332344444456788
Q ss_pred EEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEee------cccC----
Q 003423 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIK------EHIG---- 348 (821)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~------~h~~---- 348 (821)
-.++..+.. +. .+....+.++++..+ ..+|++|++||.+..||. +...+.++. .|.+
T Consensus 159 RlNLEqGrf-----L~-----P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~ 228 (703)
T KOG2321|consen 159 RLNLEQGRF-----LN-----PFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAA 228 (703)
T ss_pred EEEcccccc-----cc-----ccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcccccc
Confidence 888888766 32 333445778888887 478889999999999998 333333332 2222
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEee
Q 003423 349 RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428 (821)
Q Consensus 349 ~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~ 428 (821)
..|+++.|+.+|-.+++|..+|.+.+||++.....-...|. ..-+|..+.|.
T Consensus 229 ~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~----------------------------~e~pi~~l~~~ 280 (703)
T KOG2321|consen 229 PSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG----------------------------YELPIKKLDWQ 280 (703)
T ss_pred CcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC----------------------------Cccceeeeccc
Confidence 24999999999999999999999999999764322222221 12347777776
Q ss_pred cC--CeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCC
Q 003423 429 SE--DTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (821)
Q Consensus 429 ~~--~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~ 505 (821)
+. ...++++....+ ++|+..+++ .....+....+..+... |+..+++++..++.+..|-+..-.
T Consensus 281 ~~~~q~~v~S~Dk~~~---kiWd~~~Gk--~~asiEpt~~lND~C~~--------p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 281 DTDQQNKVVSMDKRIL---KIWDECTGK--PMASIEPTSDLNDFCFV--------PGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred ccCCCceEEecchHHh---hhcccccCC--ceeeccccCCcCceeee--------cCCceEEEecCCCcceeEEccccC
Confidence 54 345555544333 578766654 22223222222222222 456899999999988888776543
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.90 E-value=1.5e-07 Score=96.98 Aligned_cols=188 Identities=15% Similarity=0.189 Sum_probs=141.9
Q ss_pred CCCEEEEEECCCcEEEEEccCCceeEEEcc------CcceeEEEEeecc-------------CCccCeEEEEEeeCCEEE
Q 003423 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHS------PERCLLYSMKLWG-------------DNLEALRIASGTIYNEII 206 (821)
Q Consensus 146 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~~s~~~~~-------------~s~~~~~l~sg~~dg~i~ 206 (821)
...++|....||.+|+||..+++.-+++.. ...+..|.+..-. .+.+...++-|+..|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 677899999999999999999887666542 1222333321100 123556788899999999
Q ss_pred EEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE--ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 003423 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL--VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (821)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd 284 (821)
+++.. .++.-..+ ..|.+.|+++.++.+-..|.|++.|+.+..|+
T Consensus 84 ~ys~~---------------------------------~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~ 130 (541)
T KOG4547|consen 84 LYSVA---------------------------------GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYIL 130 (541)
T ss_pred EEEec---------------------------------CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEe
Confidence 99998 33333333 47999999999999989999999999999999
Q ss_pred cccCcccCCCCceeeeceEEeccceeEEEEEEcCC--EEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecC--
Q 003423 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS--FIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL-- 359 (821)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~-- 359 (821)
...... . ......+..+.+++++++ .+++++ ++|++||+ +++.+.++.+|.+ +|.+++|..+
T Consensus 131 ~~~~~~-----~-----~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~ 197 (541)
T KOG4547|consen 131 EKEKVI-----I-----RIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLID 197 (541)
T ss_pred ccccee-----e-----eeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCc-ceEEEEEEEecc
Confidence 998765 2 456666777888999854 676665 68999999 7889999999999 7999999766
Q ss_pred ---CCEEEE-EeCCCcEEEEEcCC
Q 003423 360 ---SSLLVT-AGFDSAIKVHQFQA 379 (821)
Q Consensus 360 ---~~~l~t-g~~dg~I~iwd~~~ 379 (821)
|.++++ ...+..|.+|-...
T Consensus 198 g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 198 GIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccccceeeeccccccceeEEEEEc
Confidence 555544 55666788887743
No 256
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.90 E-value=8e-06 Score=81.86 Aligned_cols=221 Identities=12% Similarity=0.079 Sum_probs=138.9
Q ss_pred EEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEE-EeecCCCCCEEEEEECCCcEEEEEccCCc
Q 003423 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC-FLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 90 ~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~-~~~~~~~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
.++-...|.|.+||-.++..+.-. ..+.+.........-.+..-+. |++ -+|++++..+ -|...|.+...+-
T Consensus 280 rIvFq~~GdIylydP~td~lekld----I~lpl~rk~k~~k~~~pskyledfa~--~~Gd~ia~VS-RGkaFi~~~~~~~ 352 (668)
T COG4946 280 RIVFQNAGDIYLYDPETDSLEKLD----IGLPLDRKKKQPKFVNPSKYLEDFAV--VNGDYIALVS-RGKAFIMRPWDGY 352 (668)
T ss_pred EEEEecCCcEEEeCCCcCcceeee----cCCccccccccccccCHHHhhhhhcc--CCCcEEEEEe-cCcEEEECCCCCe
Confidence 777777899999998765421111 0000110111111112221222 444 2788888877 4677777665554
Q ss_pred eeEEEccCcceeEEEEeeccCCccCeEEEEEeeCC-EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccccccee
Q 003423 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN-EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (821)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (821)
.++ +... ..+-|.- + ..+.+-++.|+.|| .+-|+|.. . .
T Consensus 353 ~iq-v~~~-~~VrY~r-~---~~~~e~~vigt~dgD~l~iyd~~---------------------------------~-~ 392 (668)
T COG4946 353 SIQ-VGKK-GGVRYRR-I---QVDPEGDVIGTNDGDKLGIYDKD---------------------------------G-G 392 (668)
T ss_pred eEE-cCCC-CceEEEE-E---ccCCcceEEeccCCceEEEEecC---------------------------------C-c
Confidence 432 2211 1233332 1 34556788999999 89999987 2 2
Q ss_pred eEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEEe
Q 003423 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAG 325 (821)
Q Consensus 248 ~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~~ 325 (821)
.+..+.+.-+.|.+++.+|+|++++.+.+...+.+.|+.++.. + ..-....+-|+...|++ .+++-+-
T Consensus 393 e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv------~----~idkS~~~lItdf~~~~nsr~iAYaf 462 (668)
T COG4946 393 EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV------R----LIDKSEYGLITDFDWHPNSRWIAYAF 462 (668)
T ss_pred eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe------e----EecccccceeEEEEEcCCceeEEEec
Confidence 3455667788999999999999999998888999999999865 2 12233455688899984 5666555
Q ss_pred CC----CeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeC
Q 003423 326 ED----CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (821)
Q Consensus 326 ~d----g~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~ 368 (821)
-+ ..|+++|+.+..+.......+ .=.+-+|+|++++|.--+.
T Consensus 463 P~gy~tq~Iklydm~~~Kiy~vTT~ta-~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 463 PEGYYTQSIKLYDMDGGKIYDVTTPTA-YDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred CcceeeeeEEEEecCCCeEEEecCCcc-cccCcccCCCCcEEEEEec
Confidence 44 468999997755555554444 2456789999998876553
No 257
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=2e-05 Score=77.10 Aligned_cols=265 Identities=12% Similarity=0.141 Sum_probs=156.8
Q ss_pred CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC---CCcEEEEEccC--Ccee
Q 003423 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVWDISN--SSII 170 (821)
Q Consensus 96 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~---d~~i~iwd~~~--~~~~ 170 (821)
++.|.+|+++.+... +... .+-.+.+.++=++|+| +++.|.++-. +|.|.-|.+.. |...
T Consensus 15 s~gI~v~~ld~~~g~-----------l~~~-~~v~~~~nptyl~~~~---~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt 79 (346)
T COG2706 15 SQGIYVFNLDTKTGE-----------LSLL-QLVAELGNPTYLAVNP---DQRHLYVVNEPGEEGGVAAYRIDPDDGRLT 79 (346)
T ss_pred CCceEEEEEeCcccc-----------cchh-hhccccCCCceEEECC---CCCEEEEEEecCCcCcEEEEEEcCCCCeEE
Confidence 788999999865411 1122 2223456678899999 9988888754 57788888774 4442
Q ss_pred E--EEccCcceeEEEEeeccCCccCeEEEEEee-CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccccccee
Q 003423 171 L--EVHSPERCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (821)
Q Consensus 171 ~--~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (821)
. +...+..... .+++ ++++.+|+++.. .|.|.++.++... ...
T Consensus 80 ~ln~~~~~g~~p~-yvsv---d~~g~~vf~AnY~~g~v~v~p~~~dG------------------------------~l~ 125 (346)
T COG2706 80 FLNRQTLPGSPPC-YVSV---DEDGRFVFVANYHSGSVSVYPLQADG------------------------------SLQ 125 (346)
T ss_pred EeeccccCCCCCe-EEEE---CCCCCEEEEEEccCceEEEEEcccCC------------------------------ccc
Confidence 2 1111111111 1222 678888887764 5889999987210 011
Q ss_pred eEEEEecCCCc----------EEEEEEcCCCCEEEEEeC-CCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEE
Q 003423 248 NLFRLVGHEGS----------IFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL 316 (821)
Q Consensus 248 ~~~~~~~h~~~----------I~~l~~s~~~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~ 316 (821)
.......|.+. +....+.|++++|+++.- --.|.+|++.++.. ....+..+ ...+.-..+.|
T Consensus 126 ~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L------~~~~~~~v-~~G~GPRHi~F 198 (346)
T COG2706 126 PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKL------TPADPAEV-KPGAGPRHIVF 198 (346)
T ss_pred cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcc------cccccccc-CCCCCcceEEE
Confidence 11111123333 778899999999988753 13589999997765 11111122 33445678899
Q ss_pred cC--CEEE-EEeCCCeEEEEcCCC--ceeeEeecc-------cC-CCeEEEEEecCCCEEEEEeC-CCcEEEEEcCCcCC
Q 003423 317 TD--SFII-TAGEDCTCRVWGSDG--KQLKMIKEH-------IG-RGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQAFLP 382 (821)
Q Consensus 317 ~~--~~l~-s~~~dg~i~iwd~~~--~~~~~~~~h-------~~-~~i~~l~~~~~~~~l~tg~~-dg~I~iwd~~~~~~ 382 (821)
++ ++.+ ..-.+++|-+|..+. ..+..++.+ .+ .....|.++++|++|+++.. ...|.++.++..
T Consensus 199 Hpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~-- 276 (346)
T COG2706 199 HPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD-- 276 (346)
T ss_pred cCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC--
Confidence 84 4444 345689999999843 223332221 11 23567888999999988753 236777776421
Q ss_pred CcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCc
Q 003423 383 GSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY 441 (821)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~ 441 (821)
...+ ........+....+.+.|++.+.+|+++++..
T Consensus 277 ---------------~g~L--------~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s 312 (346)
T COG2706 277 ---------------GGKL--------ELVGITPTEGQFPRDFNINPSGRFLIAANQKS 312 (346)
T ss_pred ---------------CCEE--------EEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence 0000 00111122233478899999998888876544
No 258
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.85 E-value=2.2e-08 Score=114.82 Aligned_cols=183 Identities=12% Similarity=0.194 Sum_probs=129.1
Q ss_pred eeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC
Q 003423 88 TFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (821)
Q Consensus 88 ~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~ 167 (821)
.+++..++|+.+++|....+. +.-. ....|. ..|+.+.|+. .|+....+..||.+.+|.+. .
T Consensus 2221 ~~Yltgs~dgsv~~~~w~~~~------------~v~~-~rt~g~-s~vtr~~f~~---qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2221 PYYLTGSQDGSVRMFEWGHGQ------------QVVC-FRTAGN-SRVTRSRFNH---QGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred ceEEecCCCceEEEEeccCCC------------eEEE-eeccCc-chhhhhhhcc---cCCceeeeccCCceeecccC-C
Confidence 468888899999999987543 0111 122233 7899999999 99999999999999999987 4
Q ss_pred ceeEEEccCcceeEEEEeeccCCccCeEEEEEe---eCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccccc
Q 003423 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGT---IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (821)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (821)
+....-++|... +...+|.+ ..+++++ .++.+.+||... ..
T Consensus 2283 k~~~s~qchnk~-~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl~------------------------------~~ 2326 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKA-LSDFRFIG-----SLLATAGRSSDNRNVCLWDTLL------------------------------PP 2326 (2439)
T ss_pred cceeccccCCcc-ccceeeee-----hhhhccccCCCCCcccchhccc------------------------------Cc
Confidence 444444555443 33344422 3455543 468899999761 01
Q ss_pred ceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEE
Q 003423 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITA 324 (821)
Q Consensus 245 ~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~ 324 (821)
....+. ..|.+.++++++.|..+.|+|||.+|.|++||++..+. .. .+.. +. ...+++++
T Consensus 2327 ~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql-----~h-----~~~~-------~~-~~~~f~~~ 2386 (2439)
T KOG1064|consen 2327 MNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL-----RH-----TFQA-------LD-TREYFVTG 2386 (2439)
T ss_pred ccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH-----HH-----Hhhh-------hh-hhheeecc
Confidence 233444 78999999999999999999999999999999997654 21 1111 11 35799999
Q ss_pred eCCCeEEEEcCC-CceeeEee
Q 003423 325 GEDCTCRVWGSD-GKQLKMIK 344 (821)
Q Consensus 325 ~~dg~i~iwd~~-~~~~~~~~ 344 (821)
+..|.++||+++ -..+.++.
T Consensus 2387 ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2387 SSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CcccceEEEEccccchhhcCc
Confidence 999999999994 34444443
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.85 E-value=1.7e-05 Score=80.86 Aligned_cols=268 Identities=11% Similarity=0.014 Sum_probs=159.9
Q ss_pred CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE---------cCCeEEEEEEeecCCCCCCC
Q 003423 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF---------GEKRVKLFELNFELSPNSQY 114 (821)
Q Consensus 44 ~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~---------g~~~v~i~~~~~~~~~~~~~ 114 (821)
+.|.|.|..+++.+.++..-.. -+++ ++|++ + ..+++.. .+..|.+||..+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~--P~~~-~spDg-------~--~lyva~~~~~R~~~G~~~d~V~v~D~~t~------- 87 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL--PNPV-VASDG-------S--FFAHASTVYSRIARGKRTDYVEVIDPQTH------- 87 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC--Ccee-ECCCC-------C--EEEEEeccccccccCCCCCEEEEEECccC-------
Confidence 8999999999999999987543 4455 77543 3 3555556 5799999998854
Q ss_pred CCccccccceeeeccCC-------CCcEEEEEEeecCCCCCEEEEEE-C-CCcEEEEEccCCceeEEEccCcceeEEEEe
Q 003423 115 QPETCVNLSLVQSLPRL-------SHWVFDVCFLKVCNGNRSLAIGC-S-DNSIRVWDISNSSIILEVHSPERCLLYSMK 185 (821)
Q Consensus 115 ~~~~~~~~~~~~~~~~h-------~~~I~~~~~~~~~~~~~~l~t~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~ 185 (821)
+.+..+.-- ......++++| +|++|++.- . ++.|.+.|+.+++.+.++..+....+|..
T Consensus 88 --------~~~~~i~~p~~p~~~~~~~~~~~~ls~---dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t- 155 (352)
T TIGR02658 88 --------LPIADIELPEGPRFLVGTYPWMTSLTP---DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPT- 155 (352)
T ss_pred --------cEEeEEccCCCchhhccCccceEEECC---CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEe-
Confidence 333333321 12234688899 999998775 3 78999999999999999887665555542
Q ss_pred eccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEE-EE
Q 003423 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRI-EW 264 (821)
Q Consensus 186 ~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l-~~ 264 (821)
+.+... +-+.||......+.... +........+.+-...++.= .|
T Consensus 156 ----~e~~~~--~~~~Dg~~~~v~~d~~g----------------------------~~~~~~~~vf~~~~~~v~~rP~~ 201 (352)
T TIGR02658 156 ----ANDTFF--MHCRDGSLAKVGYGTKG----------------------------NPKIKPTEVFHPEDEYLINHPAY 201 (352)
T ss_pred ----cCCccE--EEeecCceEEEEecCCC----------------------------ceEEeeeeeecCCccccccCCce
Confidence 122222 22345555554443100 00000001111101111110 34
Q ss_pred cC-CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEE--eccceeEEEEEEc--CCEEEEEe----------CCCe
Q 003423 265 SS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL--YGHNARVWDCCLT--DSFIITAG----------EDCT 329 (821)
Q Consensus 265 s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~h~~~i~~v~~~--~~~l~s~~----------~dg~ 329 (821)
.+ +|+++..... |+|.+-|+.............+..... .-....+.-++++ +++++... ..+.
T Consensus 202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~ 280 (352)
T TIGR02658 202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF 280 (352)
T ss_pred EcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE
Confidence 55 7877766655 999999976543210000110000000 0122333447787 46666532 2257
Q ss_pred EEEEcC-CCceeeEeecccCCCeEEEEEecCCC-EEEEEe-CCCcEEEEEcCC
Q 003423 330 CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG-FDSAIKVHQFQA 379 (821)
Q Consensus 330 i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~~-~l~tg~-~dg~I~iwd~~~ 379 (821)
|.++|. +++.+..+.... .++.++++||++ +|++.. .++.|.++|..+
T Consensus 281 V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 281 LFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 889998 677777776433 589999999999 887666 678899999854
No 260
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.83 E-value=1.8e-08 Score=115.49 Aligned_cols=177 Identities=12% Similarity=0.149 Sum_probs=130.5
Q ss_pred CcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCC
Q 003423 34 SLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (821)
Q Consensus 34 ~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~ 113 (821)
...||..++||.|++|....++.+..++..-..+|..+.|+.++ ...-++-|||.+.+|....
T Consensus 2220 ~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG----------nk~~i~d~dg~l~l~q~~p------- 2282 (2439)
T KOG1064|consen 2220 DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG----------NKFGIVDGDGDLSLWQASP------- 2282 (2439)
T ss_pred CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC----------CceeeeccCCceeecccCC-------
Confidence 34466666699999999999999988886555688888888554 2466677899999999872
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEE---CCCcEEEEEccCCc---eeEEEccCcceeEEEEeec
Q 003423 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC---SDNSIRVWDISNSS---IILEVHSPERCLLYSMKLW 187 (821)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~---~d~~i~iwd~~~~~---~~~~~~~~~~~~~~s~~~~ 187 (821)
+.....+.|+....++.|.. ..+++++ .++.+.+||..-.. .+. .+|... ...+++
T Consensus 2283 ---------k~~~s~qchnk~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~g-aT~l~~- 2344 (2439)
T KOG1064|consen 2283 ---------KPYTSWQCHNKALSDFRFIG-----SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGG-ATVLAY- 2344 (2439)
T ss_pred ---------cceeccccCCccccceeeee-----hhhhccccCCCCCcccchhcccCcccceee--eecCCC-ceEEEE-
Confidence 35666778998899999864 5677764 47789999975322 222 333321 222333
Q ss_pred cCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCC
Q 003423 188 GDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC 267 (821)
Q Consensus 188 ~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 267 (821)
-|...++++|+++|.|++||++ +.+.++++.. +. .
T Consensus 2345 --~P~~qllisggr~G~v~l~D~r---------------------------------qrql~h~~~~---------~~-~ 2379 (2439)
T KOG1064|consen 2345 --APKHQLLISGGRKGEVCLFDIR---------------------------------QRQLRHTFQA---------LD-T 2379 (2439)
T ss_pred --cCcceEEEecCCcCcEEEeehH---------------------------------HHHHHHHhhh---------hh-h
Confidence 3788999999999999999998 5555555443 33 5
Q ss_pred CCEEEEEeCCCeEEEEecccCcc
Q 003423 268 GSKLVSVSDDRSARIWEVRAEYW 290 (821)
Q Consensus 268 ~~~l~s~s~Dg~i~iwd~~~~~~ 290 (821)
..++++++..|.++||++.....
T Consensus 2380 ~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2380 REYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred hheeeccCcccceEEEEccccch
Confidence 67899999999999999988654
No 261
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=1.1e-06 Score=95.69 Aligned_cols=231 Identities=12% Similarity=0.058 Sum_probs=135.6
Q ss_pred CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE---cCCeEEEEEEeecCCCCCCCCCcccc
Q 003423 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF---GEKRVKLFELNFELSPNSQYQPETCV 120 (821)
Q Consensus 44 ~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~---g~~~v~i~~~~~~~~~~~~~~~~~~~ 120 (821)
..|.++|.+... ...+..+ ...+....|+|++ + .++.+. ++..|.+|++..+.
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~-~~~v~~p~wSpDG-------~---~lay~s~~~g~~~i~~~dl~~g~------------ 237 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDG-SSLVLTPRFSPNR-------Q---EITYMSYANGRPRVYLLDLETGQ------------ 237 (435)
T ss_pred eEEEEECCCCCC-cEEEecC-CCCeEeeEECCCC-------C---EEEEEEecCCCCEEEEEECCCCc------------
Confidence 389999985443 3444433 3368888999664 2 333333 34689999986542
Q ss_pred ccceeeeccCCCCcEEEEEEeecCCCCCEEE-EEECCCc--EEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEE
Q 003423 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNS--IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (821)
Q Consensus 121 ~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~-t~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (821)
...+..+.+.+.+.+|+| +|+.|+ +.+.++. |.+||+.++.. ..+..+. ....+..+ +||+..|+
T Consensus 238 ----~~~l~~~~g~~~~~~~SP---DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~-~~~~~~~~---spDG~~i~ 305 (435)
T PRK05137 238 ----RELVGNFPGMTFAPRFSP---DGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSP-AIDTSPSY---SPDGSQIV 305 (435)
T ss_pred ----EEEeecCCCcccCcEECC---CCCEEEEEEecCCCceEEEEECCCCce-EEccCCC-CccCceeE---cCCCCEEE
Confidence 123445566778899999 998775 5555555 67778877654 3343322 12233333 57888777
Q ss_pred EEe-eCC--EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEE
Q 003423 198 SGT-IYN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (821)
Q Consensus 198 sg~-~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~ 274 (821)
..+ .+| .|.++|+. ... ...+..+.+.+....|+|+|++|+..
T Consensus 306 f~s~~~g~~~Iy~~d~~---------------------------------g~~-~~~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 306 FESDRSGSPQLYVMNAD---------------------------------GSN-PRRISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCCCeEEEEECC---------------------------------CCC-eEEeecCCCcccCeEECCCCCEEEEE
Confidence 665 333 57777765 111 22333345567778999999999876
Q ss_pred eCC---CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC------CeEEEEcCCCceeeEe
Q 003423 275 SDD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED------CTCRVWGSDGKQLKMI 343 (821)
Q Consensus 275 s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d------g~i~iwd~~~~~~~~~ 343 (821)
+.+ ..|.+||+..+.. + .+ .....+....|+ ++.|+..+.+ ..+.+.++++.....+
T Consensus 352 ~~~~~~~~i~~~d~~~~~~------~-----~l-t~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGE------R-----IL-TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREV 419 (435)
T ss_pred EcCCCceEEEEEECCCCce------E-----ec-cCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEc
Confidence 654 3577788754432 1 11 122245667787 3555544432 2567777766655555
Q ss_pred ecccCCCeEEEEEec
Q 003423 344 KEHIGRGIWRCLYDS 358 (821)
Q Consensus 344 ~~h~~~~i~~l~~~~ 358 (821)
.. .+ .+...+|+|
T Consensus 420 ~~-~~-~~~~p~Wsp 432 (435)
T PRK05137 420 PT-PG-DASDPAWSP 432 (435)
T ss_pred cC-CC-CccCcccCC
Confidence 42 33 355556655
No 262
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.82 E-value=2.1e-06 Score=91.95 Aligned_cols=261 Identities=10% Similarity=0.050 Sum_probs=148.4
Q ss_pred cceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCC
Q 003423 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (821)
Q Consensus 35 ~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~ 114 (821)
+.+++.+.++.|..+|.++|+++.+..... .+.+ +|.. .+ ..+++..+++.+..||.+.++
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~~~---~p~v----~~----~~v~v~~~~g~l~a~d~~tG~------ 166 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLSS--EVLS---PPLV----AN----GLVVVRTNDGRLTALDAATGE------ 166 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccCc--eeec---CCEE----EC----CEEEEECCCCeEEEEEcCCCc------
Confidence 344444558999999999999987765322 1211 1110 11 246666678999999987543
Q ss_pred CCccccccceeeeccCCCCcEEEEE--EeecCCCCCEEEEEECCCcEEEEEccCCceeEEEcc--Ccce-eEEEE-eec-
Q 003423 115 QPETCVNLSLVQSLPRLSHWVFDVC--FLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS--PERC-LLYSM-KLW- 187 (821)
Q Consensus 115 ~~~~~~~~~~~~~~~~h~~~I~~~~--~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~~~~-~~~s~-~~~- 187 (821)
.+...+.....+ .+. -+|.- .+..++.+..++.+..+|..+|+.+.+... +... ....+ .+.
T Consensus 167 ---------~~W~~~~~~~~~-~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~ 235 (377)
T TIGR03300 167 ---------RLWTYSRVTPAL-TLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDG 235 (377)
T ss_pred ---------eeeEEccCCCce-eecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCC
Confidence 111211111110 000 01100 123677788889999999999987654321 1100 00000 000
Q ss_pred cCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCC
Q 003423 188 GDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC 267 (821)
Q Consensus 188 ~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 267 (821)
.....+..++.++.+|.+..||.. +++.+.... . ....... .+
T Consensus 236 ~p~~~~~~vy~~~~~g~l~a~d~~---------------------------------tG~~~W~~~-~-~~~~~p~--~~ 278 (377)
T TIGR03300 236 DPVVDGGQVYAVSYQGRVAALDLR---------------------------------SGRVLWKRD-A-SSYQGPA--VD 278 (377)
T ss_pred ccEEECCEEEEEEcCCEEEEEECC---------------------------------CCcEEEeec-c-CCccCce--Ee
Confidence 000134567778889999999987 333333222 1 1111122 24
Q ss_pred CCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccce-eEEEEEEcCCEEEEEeCCCeEEEEcC-CCceeeEeec
Q 003423 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA-RVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (821)
Q Consensus 268 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~ 345 (821)
+..++.++.||.+..+|..+++. .- ....... ...+....++.+++++.+|.+.++|. +|+.+.++..
T Consensus 279 ~~~vyv~~~~G~l~~~d~~tG~~-----~W-----~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 279 DNRLYVTDADGVVVALDRRSGSE-----LW-----KNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKT 348 (377)
T ss_pred CCEEEEECCCCeEEEEECCCCcE-----EE-----ccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 56788888999999999988754 11 1101111 12222334789999999999999999 7888888876
Q ss_pred ccCCCeEE-EEEecCCCEEEEEeCCCcEEEE
Q 003423 346 HIGRGIWR-CLYDSLSSLLVTAGFDSAIKVH 375 (821)
Q Consensus 346 h~~~~i~~-l~~~~~~~~l~tg~~dg~I~iw 375 (821)
+.. .+.. .++. + ..|+.++.||.|..+
T Consensus 349 ~~~-~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 349 DGS-GIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCC-ccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 654 2332 2333 3 458899999998765
No 263
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=2.7e-06 Score=86.82 Aligned_cols=313 Identities=12% Similarity=0.156 Sum_probs=175.8
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEEeC-----------
Q 003423 260 FRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGE----------- 326 (821)
Q Consensus 260 ~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~~~----------- 326 (821)
+-+.|||.|.||+|--.-| |.+|--.+-.. .....|.. |.-+.|+| ++|+|-+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r-----------~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e 280 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDR-----------IQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNE 280 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHH-----------HHhccCCC-ceeeecCCccceEEEecCCccccCcccCC
Confidence 5689999999999988744 88996554332 23444543 66677774 78888762
Q ss_pred CCeEEEEcC-CCceeeEeecccC-CCeEE-EEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEe
Q 003423 327 DCTCRVWGS-DGKQLKMIKEHIG-RGIWR-CLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSI 403 (821)
Q Consensus 327 dg~i~iwd~-~~~~~~~~~~h~~-~~i~~-l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (821)
...++|||+ +|...+.+..... ..+|. ..||.|++++|--..| +|.+|+...-.+ ++..
T Consensus 281 ~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~l--ld~K--------------- 342 (698)
T KOG2314|consen 281 GQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFML--LDKK--------------- 342 (698)
T ss_pred CceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceee--eccc---------------
Confidence 257999999 8888888776322 23554 4799999999988775 588887643110 0000
Q ss_pred ecCCcccceeccCCCCcceEEEEeecCCeEEEEecCC------cEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCC
Q 003423 404 KIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG------YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEP 477 (821)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g------~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 477 (821)
..+-..|+...|+|.+.+|+.-.-. ++-...+...+..+-..+.. +....+.+.
T Consensus 343 ------------slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn------VsDckLhWQ-- 402 (698)
T KOG2314|consen 343 ------------SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN------VSDCKLHWQ-- 402 (698)
T ss_pred ------------ccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee------eeccEEEec--
Confidence 0011337777788877666643211 11111111111111001110 111111111
Q ss_pred CCCCCCCcEEEE----------ecCCccEEEEEecCCCC------CCcceeEEeeccCccceeeeeEEeecCCCeEEEEE
Q 003423 478 KYPCGIDDWVAL----------GDGKGNMTIVRVVGDVH------TPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTA 541 (821)
Q Consensus 478 ~~s~~~~~~l~~----------g~~~g~i~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 541 (821)
..+++|++ .+.-..+.|+.++.... ....++.++|.|.+ +++.+..
T Consensus 403 ----k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~g--------------dkF~vi~ 464 (698)
T KOG2314|consen 403 ----KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHG--------------DKFAVIS 464 (698)
T ss_pred ----cCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCC--------------CeEEEEE
Confidence 12233332 22223566777766543 12234445555543 2443333
Q ss_pred CC--CCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEE---cCCCcEEEEecCcccccc
Q 003423 542 DP--KGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCG---DLRGNLVLFPLLRDLLND 616 (821)
Q Consensus 542 ~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sg---s~dG~i~iw~~~~~~~~~ 616 (821)
+. ..++.+|.++.. ...+.++..+...| .+.+-|+|.|++++.+ |..|.+.++|++..
T Consensus 465 g~~~k~tvsfY~~e~~----------~~~~~lVk~~dk~~---~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a---- 527 (698)
T KOG2314|consen 465 GNTVKNTVSFYAVETN----------IKKPSLVKELDKKF---ANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA---- 527 (698)
T ss_pred ccccccceeEEEeecC----------CCchhhhhhhcccc---cceEEEcCCCcEEEEEEecccccceEEEecchh----
Confidence 33 336888888753 12235566653333 5889999999988764 56899999998731
Q ss_pred cccccccccCcccccccccCCcceEEEEEEecCCCceEEEEecC------CCeEEEEEeecC
Q 003423 617 KSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGG------DGCICYLEYDKD 672 (821)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~------Dg~i~iw~~~~~ 672 (821)
........ -| ..-|-+.|- +.+.|++|++. |.-++||++...
T Consensus 528 -------~~k~~~~~--eh--~~at~veWD---PtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 528 -------DLKDTASP--EH--FAATEVEWD---PTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred -------hhhhccCc--cc--cccccceEC---CCCCEEEEeeehhhhccccceEEEEeecH
Confidence 01001111 22 245777777 45677777664 677889988653
No 264
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.79 E-value=8.1e-07 Score=96.79 Aligned_cols=190 Identities=15% Similarity=0.088 Sum_probs=120.1
Q ss_pred eeccCCCCcEEEEEEeecCCCCCEEEEEECC---CcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEE-EEee
Q 003423 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTI 201 (821)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~ 201 (821)
+.+..+...+...+|+| +|++|+.+..+ ..|.+||+.+++........ ....++.+ ++++..|+ +.+.
T Consensus 183 ~~l~~~~~~~~~p~~Sp---dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~--~~~~~~~~---spDg~~l~~~~~~ 254 (417)
T TIGR02800 183 QTITRSREPILSPAWSP---DGQKLAYVSFESGKPEIYVQDLATGQREKVASFP--GMNGAPAF---SPDGSKLAVSLSK 254 (417)
T ss_pred EEeecCCCceecccCCC---CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC--CCccceEE---CCCCCEEEEEECC
Confidence 44455667789999999 99999877643 47999999887653322211 12233444 57877665 4444
Q ss_pred CC--EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCC-C
Q 003423 202 YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-R 278 (821)
Q Consensus 202 dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~D-g 278 (821)
++ .|++|++. ... ...+..|.+......|+|+|++|+.++.. +
T Consensus 255 ~~~~~i~~~d~~---------------------------------~~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g 300 (417)
T TIGR02800 255 DGNPDIYVMDLD---------------------------------GKQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG 300 (417)
T ss_pred CCCccEEEEECC---------------------------------CCC-EEECCCCCCCCCCEEECCCCCEEEEEECCCC
Confidence 44 57777876 111 22333454555567899999988766543 3
Q ss_pred --eEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCC---eEEEEcCCCceeeEeecccCCCe
Q 003423 279 --SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEHIGRGI 351 (821)
Q Consensus 279 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg---~i~iwd~~~~~~~~~~~h~~~~i 351 (821)
.|.++|+.+++. ..+..+...+....|+ +++++.++.++ .|.+||+.+.....+.... ..
T Consensus 301 ~~~iy~~d~~~~~~-----------~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~ 367 (417)
T TIGR02800 301 SPQIYMMDADGGEV-----------RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTG--LD 367 (417)
T ss_pred CceEEEEECCCCCE-----------EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCC--CC
Confidence 567777765543 2333344556677787 46777777665 7888888554444444332 24
Q ss_pred EEEEEecCCCEEEEEeCCC
Q 003423 352 WRCLYDSLSSLLVTAGFDS 370 (821)
Q Consensus 352 ~~l~~~~~~~~l~tg~~dg 370 (821)
....|+|+++.|+....++
T Consensus 368 ~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 368 ESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCceECCCCCEEEEEEeCC
Confidence 4568999999888877654
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.76 E-value=3.3e-05 Score=75.59 Aligned_cols=169 Identities=12% Similarity=0.132 Sum_probs=106.7
Q ss_pred eecCCCeEEEEECCCC-cEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcC-CCcEEEE
Q 003423 530 CKSLGHRFIFTADPKG-RLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDL-RGNLVLF 607 (821)
Q Consensus 530 ~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~-dG~i~iw 607 (821)
.+.|++++|++.+-.- +|.+|++.++...... . .. ..-+..-..+.|+|++++..+-.+ +++|.+|
T Consensus 151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~------~----~~--v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~ 218 (346)
T COG2706 151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPAD------P----AE--VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVL 218 (346)
T ss_pred eeCCCCCEEEEeecCCceEEEEEcccCcccccc------c----cc--cCCCCCcceEEEcCCCcEEEEEeccCCEEEEE
Confidence 4568899998875433 6999999976322110 0 11 122445688999999998876655 8999999
Q ss_pred ecCcccccccccccccccCccccccc-ccCCcceEEEEEEecCCCceEEEEecC-CCeEEEEEeecCCceeeeeeeeeee
Q 003423 608 PLLRDLLNDKSVALHVEVSPLNYFKG-AHGISTVSTLSVAKLRSNQTEIRSTGG-DGCICYLEYDKDRESLEFIGMKQVK 685 (821)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~Vt~i~~~~~~~~~~~l~t~g~-Dg~i~iw~~~~~~~~~~~~~~~~~~ 685 (821)
..+... ++-..++.+.+++. -+|......|... +++.+|+++-| ...|-+|.++....+..+.+....+
T Consensus 219 ~y~~~~------g~~~~lQ~i~tlP~dF~g~~~~aaIhis---~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te 289 (346)
T COG2706 219 EYNPAV------GKFEELQTIDTLPEDFTGTNWAAAIHIS---PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE 289 (346)
T ss_pred EEcCCC------ceEEEeeeeccCccccCCCCceeEEEEC---CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC
Confidence 988531 11123333444433 4455667777777 67888998888 4589999998876665555443222
Q ss_pred eeeeeeeeccCCCccCCCCCeEEEeeecc-cEEEEECcccc
Q 003423 686 ELSLIQSVSAENNSIDLASCNYAAGFAST-DFIIWNLITEA 725 (821)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~-~~~vW~~~~~~ 725 (821)
...|..+-+.+.+++|++..++. .+.|+....++
T Consensus 290 ------g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 290 ------GQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred ------CcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 22233445567788877777665 36666544433
No 266
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.76 E-value=1.2e-07 Score=87.37 Aligned_cols=74 Identities=19% Similarity=0.351 Sum_probs=61.0
Q ss_pred cEEEEEEcCCC-CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEE
Q 003423 258 SIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVW 333 (821)
Q Consensus 258 ~I~~l~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iw 333 (821)
.|.+++-+|.. +.+++|++||.+-+||.+.... .. ..+..|+++||.+.|+ |..|+++++||.+--|
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-----p~----S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-----PV----SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccc-----hH----HHHHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 38899999855 5678889999999999998633 11 4778899999999999 5899999999999999
Q ss_pred cCCCcee
Q 003423 334 GSDGKQL 340 (821)
Q Consensus 334 d~~~~~~ 340 (821)
|..++.+
T Consensus 252 das~~~l 258 (319)
T KOG4714|consen 252 DASTTFL 258 (319)
T ss_pred cCCCceE
Confidence 9865433
No 267
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1e-05 Score=83.19 Aligned_cols=280 Identities=12% Similarity=0.138 Sum_probs=160.9
Q ss_pred eeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcC--
Q 003423 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE-- 96 (821)
Q Consensus 19 ~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~-- 96 (821)
+.+..+++ ++ +++++-+.+..++|++..++..+.+... . ++..+.|+|.+...... ...++.++
T Consensus 36 ~~~v~~~S--~~----G~lfA~~~~~~v~i~~~~~~~~~lt~~~--~-~~~~L~fSP~g~yL~T~-----e~~~i~~~~~ 101 (566)
T KOG2315|consen 36 PCNVFAYS--NN----GRLFAYSDNQVVKVFEIATLKVVLCVEL--K-KTYDLLFSPKGNYLLTW-----EPWAIYGPKN 101 (566)
T ss_pred cceeEEEc--CC----CcEEEEEcCCeEEEEEccCCcEEEEecc--c-eeeeeeecccccccccc-----cccccccCCC
Confidence 45666777 76 7899999999999999999864433332 2 68889999875221111 12223333
Q ss_pred ---CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCcee-EE
Q 003423 97 ---KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-LE 172 (821)
Q Consensus 97 ---~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~-~~ 172 (821)
..+++|++.+.- .......+-..+| +..|++ |..+ +.=-..+.+.+|+..+.+.+ ..
T Consensus 102 ~~~pn~~v~~vet~~-------------~~s~~q~k~Q~~W--~~qfs~---dEsl-~arlv~nev~f~~~~~f~~~~~k 162 (566)
T KOG2315|consen 102 ASNPNVLVYNVETGV-------------QRSQIQKKMQNGW--VPQFSI---DESL-AARLVSNEVQFYDLGSFKTIQHK 162 (566)
T ss_pred CCCCceeeeeeccce-------------ehhheehhhhcCc--cccccc---chhh-hhhhhcceEEEEecCCccceeee
Confidence 456799988631 0111111222344 788887 5543 32333578999998774332 22
Q ss_pred EccCcceeEEEEeeccCCccCeEEEE-----EeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccccccee
Q 003423 173 VHSPERCLLYSMKLWGDNLEALRIAS-----GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (821)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~s-----g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (821)
+.... ...+. +. ..+....||+ ++.-+.++||.+...... ...
T Consensus 163 l~~~~-i~~f~--lS-pgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~----------------------------~~~ 210 (566)
T KOG2315|consen 163 LSVSG-ITMLS--LS-PGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH----------------------------QPV 210 (566)
T ss_pred eeccc-eeeEE--ec-CCCCCceEEEEccCCCCCCcEEEEecccccccc----------------------------chh
Confidence 32111 11112 21 1223334443 344567888877611000 000
Q ss_pred eEEEEecCCCcEEEEEEcCCCC-E--EEEEeCC---------CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEE
Q 003423 248 NLFRLVGHEGSIFRIEWSSCGS-K--LVSVSDD---------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC 315 (821)
Q Consensus 248 ~~~~~~~h~~~I~~l~~s~~~~-~--l~s~s~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~ 315 (821)
...+|- ...=..+.|++-|. + |++..-| .++.+.+++.... ..-....++|.++.
T Consensus 211 a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~-----------~V~L~k~GPVhdv~ 277 (566)
T KOG2315|consen 211 ANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV-----------SVPLLKEGPVHDVT 277 (566)
T ss_pred hhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE-----------EEecCCCCCceEEE
Confidence 111111 11123466777664 2 2333333 3677777763222 23333478999999
Q ss_pred EcC--C--EEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCC---CcEEEEEcCC
Q 003423 316 LTD--S--FIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD---SAIKVHQFQA 379 (821)
Q Consensus 316 ~~~--~--~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~d---g~I~iwd~~~ 379 (821)
|++ . -++-|-.=..+.++|++++.+..+... +=..+-|+|.|++|+.+|.+ |.|.+||...
T Consensus 278 W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~eg---pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 278 WSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEG---PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred ECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCC---CccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 983 2 334455668899999999988887543 34678999999999998864 7899999954
No 268
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.75 E-value=8.8e-08 Score=93.97 Aligned_cols=160 Identities=20% Similarity=0.251 Sum_probs=107.2
Q ss_pred EEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce----eEEEccCcceeEEEEeeccCCccCeEEEEEeeCC---EEEE
Q 003423 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI----ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN---EIIV 207 (821)
Q Consensus 135 I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg---~i~v 207 (821)
...+..+| .+++||.+..+....++++..... +.....+.++. ++.+. .+...+..+...| .+.+
T Consensus 65 ~~~~~~s~---~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~--ai~~~---~~~~sv~v~dkagD~~~~di 136 (390)
T KOG3914|consen 65 PALVLTSD---SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPT--AISFI---REDTSVLVADKAGDVYSFDI 136 (390)
T ss_pred ccccccCC---CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcc--eeeee---eccceEEEEeecCCceeeee
Confidence 33455566 888888888777776777654332 22223333322 22222 2233333333334 4444
Q ss_pred EEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeccc
Q 003423 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (821)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~ 287 (821)
|+.. ++ ....+-||-..+..|+++||+++++++..|..||+-....
T Consensus 137 ~s~~---------------------------------~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa 182 (390)
T KOG3914|consen 137 LSAD---------------------------------SG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA 182 (390)
T ss_pred eccc---------------------------------cc-CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc
Confidence 4433 21 2223458999999999999999999999999999987766
Q ss_pred CcccCCCCceeeeceEEeccceeEEEEEEcC-CEEEEEeCCCeEEEEcC-CCceeeEeec
Q 003423 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (821)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~l~s~~~dg~i~iwd~-~~~~~~~~~~ 345 (821)
... ++ ....||+.-|..++..+ ..|+++|.|+++++||+ .|+++.++..
T Consensus 183 ~f~-----Ie----sfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 183 TFV-----IE----SFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred ccc-----hh----hhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccch
Confidence 433 33 46779999999999984 55699999999999999 7888766543
No 269
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.75 E-value=8.7e-06 Score=82.56 Aligned_cols=286 Identities=13% Similarity=0.182 Sum_probs=173.7
Q ss_pred Ccceeeccce-----eeeeeEEEEEeccCCCCCCcceEEeec----------------CCeEEEEECCCCeeeeEEEeec
Q 003423 6 LSEWRLDVGQ-----YLGEISALCFVHLPSHLSSLPFLLAGS----------------GSQVLLYDLEAGTLIRPFQVFH 64 (821)
Q Consensus 6 i~~w~~~~~~-----~~~~Vt~l~~~~~p~~~~~~~~l~~g~----------------~~~i~iwd~~t~~~~~~~~~~~ 64 (821)
|.+|.-.... ....|.-+.|+ |. +.||.+=+ ...+.|||..+|.++..+....
T Consensus 55 V~~~~g~~~~~l~~~~~~~V~~~~fS--P~----~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~ 128 (561)
T COG5354 55 VECWGGPSKAKLVRFRHPDVKYLDFS--PN----EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGIS 128 (561)
T ss_pred eEEccccchhheeeeecCCceecccC--cc----cceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccC
Confidence 4555544433 33457888899 88 78887722 2359999999999998887643
Q ss_pred ccc--EE-eEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEe
Q 003423 65 GIR--LH-GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL 141 (821)
Q Consensus 65 ~~~--i~-~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~ 141 (821)
. + .. -++|+-+ +.+++=.-+..+.|+++ ++... ....+.++ ...|++..|+
T Consensus 129 q-~~~~Wp~~k~s~~-----------D~y~ARvv~~sl~i~e~-t~n~~-----------~~p~~~lr--~~gi~dFsis 182 (561)
T COG5354 129 Q-PYLGWPVLKFSID-----------DKYVARVVGSSLYIHEI-TDNIE-----------EHPFKNLR--PVGILDFSIS 182 (561)
T ss_pred C-cccccceeeeeec-----------chhhhhhccCeEEEEec-CCccc-----------cCchhhcc--ccceeeEEec
Confidence 2 2 22 2334421 23555446788999998 33211 11222222 3668999999
Q ss_pred ecCCCCCEEEE-----EECCCcEEEEEccCCceeEE--EccCcceeEEEEeeccCCccCeEEEE--Ee-------eC--C
Q 003423 142 KVCNGNRSLAI-----GCSDNSIRVWDISNSSIILE--VHSPERCLLYSMKLWGDNLEALRIAS--GT-------IY--N 203 (821)
Q Consensus 142 ~~~~~~~~l~t-----~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~s~~~~~~s~~~~~l~s--g~-------~d--g 203 (821)
|.. ++..||. ...++.+++|.+..+..+.+ +..-.++. +.+. +.+.+++. -+ .. .
T Consensus 183 P~~-n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q-----LkW~-~~g~~ll~l~~t~~ksnKsyfges 255 (561)
T COG5354 183 PEG-NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ-----LKWQ-VLGKYLLVLVMTHTKSNKSYFGES 255 (561)
T ss_pred CCC-CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE-----EEEe-cCCceEEEEEEEeeecccceeccc
Confidence 932 3344553 35688999999986655432 22222222 2222 22332221 11 11 3
Q ss_pred EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEE--eCCCeEE
Q 003423 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV--SDDRSAR 281 (821)
Q Consensus 204 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~--s~Dg~i~ 281 (821)
++.++++. .. .+....+-.++|...+|.|.++.++.+ -.+-.+.
T Consensus 256 nLyl~~~~---------------------------------e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s 301 (561)
T COG5354 256 NLYLLRIT---------------------------------ER-SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVS 301 (561)
T ss_pred eEEEEeec---------------------------------cc-ccceeccccccceeeeecccCCceeEEeccccccee
Confidence 45555554 11 122222567899999999999876554 4778899
Q ss_pred EEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC---CeEEEEcCCCcee--eEeecccCCCeEEE
Q 003423 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQL--KMIKEHIGRGIWRC 354 (821)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~h~~~~i~~l 354 (821)
++|++.. . .+......=..+.|+ .++++.++-| |.+-+|+..++.+ ..+.+. ...-+
T Consensus 302 ~~~lr~N-l------------~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~---n~s~~ 365 (561)
T COG5354 302 VFDLRGN-L------------RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL---NTSYC 365 (561)
T ss_pred ecccccc-e------------EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC---CceEe
Confidence 9998875 1 333334444556666 4788888766 6899999955433 345443 34567
Q ss_pred EEecCCCEEEEEe------CCCcEEEEEcCCc
Q 003423 355 LYDSLSSLLVTAG------FDSAIKVHQFQAF 380 (821)
Q Consensus 355 ~~~~~~~~l~tg~------~dg~I~iwd~~~~ 380 (821)
.|+|++.++.+.. .|..|++||+.+.
T Consensus 366 ~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 366 DWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred eccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 8999999887764 4788999999653
No 270
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.75 E-value=0.00019 Score=75.33 Aligned_cols=282 Identities=15% Similarity=0.163 Sum_probs=158.7
Q ss_pred CCCcceee--cccee--------eeeeEEEEEeccCCCCCCcceEEee-c----CCeEEEEECCC--Cee--eeEEEeec
Q 003423 4 KDLSEWRL--DVGQY--------LGEISALCFVHLPSHLSSLPFLLAG-S----GSQVLLYDLEA--GTL--IRPFQVFH 64 (821)
Q Consensus 4 ~~i~~w~~--~~~~~--------~~~Vt~l~~~~~p~~~~~~~~l~~g-~----~~~i~iwd~~t--~~~--~~~~~~~~ 64 (821)
+.|.++++ .+++. ....+.|+++ |+ +++|.+. + .+.|..|++.. |++ +.+... .
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~--~~----~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~ 85 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVS--PD----GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-G 85 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE---TT----SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-S
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEE--eC----CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-C
Confidence 45777777 33431 1224577888 87 5555554 3 46999999876 443 333322 3
Q ss_pred cccEEeEEeccccCCCCCCccceeeEEEE-EcCCeEEEEEEeecCCCCCCCCCccccccceee-ec----------cCCC
Q 003423 65 GIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQ-SL----------PRLS 132 (821)
Q Consensus 65 ~~~i~~i~~~~~~~~~~~~~~~~~~~l~~-~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~h~ 132 (821)
+.....+.+++++ ..++++ .+++.+.++++.... . +.... .+ ....
T Consensus 86 g~~p~~i~~~~~g----------~~l~vany~~g~v~v~~l~~~g----------~--l~~~~~~~~~~g~g~~~~rq~~ 143 (345)
T PF10282_consen 86 GSSPCHIAVDPDG----------RFLYVANYGGGSVSVFPLDDDG----------S--LGEVVQTVRHEGSGPNPDRQEG 143 (345)
T ss_dssp SSCEEEEEECTTS----------SEEEEEETTTTEEEEEEECTTS----------E--EEEEEEEEESEEEESSTTTTSS
T ss_pred CCCcEEEEEecCC----------CEEEEEEccCCeEEEEEccCCc----------c--cceeeeecccCCCCCccccccc
Confidence 4455667777553 233333 478999999998531 0 11111 11 1122
Q ss_pred CcEEEEEEeecCCCCCEEEEEEC-CCcEEEEEccCCc--e--eEEEccCcceeEEEEeeccCCccCeEEEE-EeeCCEEE
Q 003423 133 HWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSS--I--ILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEII 206 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~~~-d~~i~iwd~~~~~--~--~~~~~~~~~~~~~s~~~~~~s~~~~~l~s-g~~dg~i~ 206 (821)
.-..++.|+| ++++|+++.. ...|.+|++.... . ...+..+...-...+.| ++++.++.. ...++.|.
T Consensus 144 ~h~H~v~~~p---dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f---~pdg~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 144 PHPHQVVFSP---DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF---SPDGKYAYVVNELSNTVS 217 (345)
T ss_dssp TCEEEEEE-T---TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE----TTSSEEEEEETTTTEEE
T ss_pred ccceeEEECC---CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE---cCCcCEEEEecCCCCcEE
Confidence 4478899999 9998887643 4579999998655 3 22334444444445556 467776654 45688999
Q ss_pred EEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe----cC--CCcEEEEEEcCCCCEEEEE-eCCCe
Q 003423 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV----GH--EGSIFRIEWSSCGSKLVSV-SDDRS 279 (821)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h--~~~I~~l~~s~~~~~l~s~-s~Dg~ 279 (821)
++++.... .....+..+. +. ......|+++|||++|..+ ..+.+
T Consensus 218 v~~~~~~~-----------------------------g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s 268 (345)
T PF10282_consen 218 VFDYDPSD-----------------------------GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS 268 (345)
T ss_dssp EEEEETTT-----------------------------TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred EEeecccC-----------------------------CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence 99887110 0122222222 11 1257889999999987554 45688
Q ss_pred EEEEecccC-cccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEe-CCCeEEEEcC---CCceeeEeecccCCCeE
Q 003423 280 ARIWEVRAE-YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-EDCTCRVWGS---DGKQLKMIKEHIGRGIW 352 (821)
Q Consensus 280 i~iwd~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~-~dg~i~iwd~---~~~~~~~~~~h~~~~i~ 352 (821)
|.++++... .. +..+ ............+.++ +++|+++. .++.|.+|++ +|.....-.........
T Consensus 269 I~vf~~d~~~g~-----l~~~--~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ 341 (345)
T PF10282_consen 269 ISVFDLDPATGT-----LTLV--QTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPV 341 (345)
T ss_dssp EEEEEECTTTTT-----EEEE--EEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEE
T ss_pred EEEEEEecCCCc-----eEEE--EEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCE
Confidence 999999432 22 3333 1222223336788886 67777666 6679999987 34433332222222355
Q ss_pred EEEE
Q 003423 353 RCLY 356 (821)
Q Consensus 353 ~l~~ 356 (821)
|+.|
T Consensus 342 ci~f 345 (345)
T PF10282_consen 342 CIVF 345 (345)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 6654
No 271
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.73 E-value=2.7e-08 Score=104.23 Aligned_cols=229 Identities=15% Similarity=0.203 Sum_probs=152.5
Q ss_pred CCCcceeeccce----------eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCe-eeeEEEeeccccEEeE
Q 003423 4 KDLSEWRLDVGQ----------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-LIRPFQVFHGIRLHGI 71 (821)
Q Consensus 4 ~~i~~w~~~~~~----------~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~-~~~~~~~~~~~~i~~i 71 (821)
.+..+|++.... |...||.+.|. |. ....|+.+. |.++..||+.+.. ++.....-+ ..-..+
T Consensus 91 qkaiiwnlA~ss~~aIef~lhghsraitd~n~~--~q---~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~-s~asqV 164 (1081)
T KOG0309|consen 91 QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFN--PQ---HPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR-SAASQV 164 (1081)
T ss_pred chhhhhhhhcCCccceEEEEecCccceeccccC--CC---CCcceeeccccccceeeeccCCCcceeeeeccc-ccCcee
Confidence 345567766543 67789999998 66 344666666 8999999998753 444443322 234556
Q ss_pred EeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEE
Q 003423 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (821)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~ 151 (821)
.|+-. . ...++.+-++.+++||+..+. .++..+++|-..|+.++|... ....+.
T Consensus 165 kwnyk----~------p~vlasshg~~i~vwd~r~gs--------------~pl~s~K~~vs~vn~~~fnr~--~~s~~~ 218 (1081)
T KOG0309|consen 165 KWNYK----D------PNVLASSHGNDIFVWDLRKGS--------------TPLCSLKGHVSSVNSIDFNRF--KYSEIM 218 (1081)
T ss_pred eeccc----C------cchhhhccCCceEEEeccCCC--------------cceEEecccceeeehHHHhhh--hhhhhc
Confidence 66522 1 247888889999999998764 567888999999999999752 445788
Q ss_pred EEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCC
Q 003423 152 IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (821)
Q Consensus 152 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 231 (821)
+++.|++|+.||.......-+........+|-.++.+.. ++.++.---.++.+.+.++++....
T Consensus 219 s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg-~g~~~mp~~G~n~v~~~~c~n~d~e--------------- 282 (1081)
T KOG0309|consen 219 SSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG-EGYCIMPMVGGNMVPQLRCENSDLE--------------- 282 (1081)
T ss_pred ccCCCCceeeecccccccccceeccccCcceeccccccC-ceeEeccccCCeeeeeccccchhhh---------------
Confidence 999999999999876544333333444456666665552 4443332222235556665521100
Q ss_pred CCcceeeecccccceeeEEEEecCCCcEEEEEEcCCC----------CEEEEEeCCCeEEEEecccC
Q 003423 232 SDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG----------SKLVSVSDDRSARIWEVRAE 288 (821)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~----------~~l~s~s~Dg~i~iwd~~~~ 288 (821)
++......+++++.||++.|....|-..+ -+|+|=|.|.++|+|-+.+.
T Consensus 283 --------~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 283 --------WNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred --------hccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 00111457899999999999887774322 16999999999999998764
No 272
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=4.6e-06 Score=85.20 Aligned_cols=283 Identities=14% Similarity=0.197 Sum_probs=167.5
Q ss_pred eeEEEEEeccCCCCCCcceEEee------------cCCeEEEEECCCCeeeeEEEeecccc-EEe-EEeccccCCCCCCc
Q 003423 19 EISALCFVHLPSHLSSLPFLLAG------------SGSQVLLYDLEAGTLIRPFQVFHGIR-LHG-ISCNFINCTEGSVS 84 (821)
Q Consensus 19 ~Vt~l~~~~~p~~~~~~~~l~~g------------~~~~i~iwd~~t~~~~~~~~~~~~~~-i~~-i~~~~~~~~~~~~~ 84 (821)
.|--+.|| |. .+||++= ++..+.|||+.||.+.+.+..++... +.. +.|+ .|
T Consensus 251 ~Vq~idfS--P~----EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS-------~D- 316 (698)
T KOG2314|consen 251 GVQFIDFS--PN----EKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS-------HD- 316 (698)
T ss_pred CceeeecC--Cc----cceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec-------cC-
Confidence 36678899 98 7888871 23689999999999999998865422 222 3445 33
Q ss_pred cceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEE--C---CCcE
Q 003423 85 TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC--S---DNSI 159 (821)
Q Consensus 85 ~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~--~---d~~i 159 (821)
+.++|.-..++|.||+... +.++..-.---+.|.+..|+| .+++||-=+ . -..+
T Consensus 317 ---dKy~Arm~~~sisIyEtps---------------f~lld~Kslki~gIr~FswsP---~~~llAYwtpe~~~~parv 375 (698)
T KOG2314|consen 317 ---DKYFARMTGNSISIYETPS---------------FMLLDKKSLKISGIRDFSWSP---TSNLLAYWTPETNNIPARV 375 (698)
T ss_pred ---CceeEEeccceEEEEecCc---------------eeeecccccCCccccCcccCC---CcceEEEEcccccCCcceE
Confidence 3588888889999998652 111111111235688899999 777776321 1 1245
Q ss_pred EEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEE----------EeeCCEEEEEEcccCCcccCCCCCCCcccCC
Q 003423 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS----------GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (821)
Q Consensus 160 ~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s----------g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 229 (821)
.+-.+.+++.++...-.. +-.+.+++. .+|.+|+. ++....+.|+.++.
T Consensus 376 tL~evPs~~~iRt~nlfn---VsDckLhWQ-k~gdyLcvkvdR~tK~~~~g~f~n~eIfrire----------------- 434 (698)
T KOG2314|consen 376 TLMEVPSKREIRTKNLFN---VSDCKLHWQ-KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE----------------- 434 (698)
T ss_pred EEEecCccceeeecccee---eeccEEEec-cCCcEEEEEEEeeccccccceEeeEEEEEeec-----------------
Confidence 566666665554432221 222333333 34555553 22233444555541
Q ss_pred CCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEecccCcccCCCCceeeeceEEec
Q 003423 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD---RSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (821)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 306 (821)
...++... .-...|...+|-|.|+.++.-+.. .++.+|.+.+... ..+.+ ..+.
T Consensus 435 ---------------KdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~----~~~lV--k~~d- 491 (698)
T KOG2314|consen 435 ---------------KDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK----KPSLV--KELD- 491 (698)
T ss_pred ---------------cCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC----chhhh--hhhc-
Confidence 11222222 245678999999999877654432 5788888874221 02211 1111
Q ss_pred cceeEEEEEEc--CCEEEEEe---CCCeEEEEcCCC-ceee-EeecccCCCeEEEEEecCCCEEEEEeC------CCcEE
Q 003423 307 HNARVWDCCLT--DSFIITAG---EDCTCRVWGSDG-KQLK-MIKEHIGRGIWRCLYDSLSSLLVTAGF------DSAIK 373 (821)
Q Consensus 307 h~~~i~~v~~~--~~~l~s~~---~dg~i~iwd~~~-~~~~-~~~~h~~~~i~~l~~~~~~~~l~tg~~------dg~I~ 373 (821)
....+.+.|+ +.+++.+. ..|.+..+|.+. .+.. ....|.. .+.+.|+|.|++++|++. |..-+
T Consensus 492 -k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~--at~veWDPtGRYvvT~ss~wrhk~d~GYr 568 (698)
T KOG2314|consen 492 -KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFA--ATEVEWDPTGRYVVTSSSSWRHKVDNGYR 568 (698)
T ss_pred -ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccc--cccceECCCCCEEEEeeehhhhccccceE
Confidence 2334667787 46666553 568899999864 2222 2233443 678899999999999874 45567
Q ss_pred EEEcCCcCCC
Q 003423 374 VHQFQAFLPG 383 (821)
Q Consensus 374 iwd~~~~~~~ 383 (821)
+|++.++.++
T Consensus 569 i~tfqGrll~ 578 (698)
T KOG2314|consen 569 IFTFQGRLLK 578 (698)
T ss_pred EEEeecHHHH
Confidence 8888775543
No 273
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.68 E-value=6.4e-06 Score=88.62 Aligned_cols=243 Identities=11% Similarity=0.010 Sum_probs=130.3
Q ss_pred CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCe--EEEEEEeecCCCCCCCCCccccc
Q 003423 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR--VKLFELNFELSPNSQYQPETCVN 121 (821)
Q Consensus 44 ~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~--v~i~~~~~~~~~~~~~~~~~~~~ 121 (821)
..|.+.|...+... .+.. ....+..-.|+|+ ++.....++...++. |.+.++..+.
T Consensus 165 ~~l~~~d~dG~~~~-~lt~-~~~~~~sP~wSPD-------G~~~~~~y~S~~~g~~~I~~~~l~~g~------------- 222 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQ-EHSLSITPTWMHI-------GSGFPYLYVSYKLGVPKIFLGSLENPA------------- 222 (428)
T ss_pred ceEEEEcCCCCCce-Eccc-CCCCcccceEccC-------CCceEEEEEEccCCCceEEEEECCCCC-------------
Confidence 36888887655443 3332 2223445567754 321112224444444 4445554332
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC-----CCcEEEEEccCC--ceeEEEccCcceeEEEEeeccCCccCe
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-----DNSIRVWDISNS--SIILEVHSPERCLLYSMKLWGDNLEAL 194 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~-----d~~i~iwd~~~~--~~~~~~~~~~~~~~~s~~~~~~s~~~~ 194 (821)
.+.+..+++ .....+|+| ||+.||..+. +-.+.+|++..+ .....+.........+..+ +||+.
T Consensus 223 ~~~lt~~~g---~~~~p~wSP---DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w---SPDG~ 293 (428)
T PRK01029 223 GKKILALQG---NQLMPTFSP---RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF---SPDGT 293 (428)
T ss_pred ceEeecCCC---CccceEECC---CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE---CCCCC
Confidence 123333443 345689999 9988886553 223455776653 1222332221112223333 68988
Q ss_pred EEEEEe-eCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEE
Q 003423 195 RIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (821)
Q Consensus 195 ~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s 273 (821)
.|+..+ .+|...+|.+... ........+..+.+.+....|+|||+.|+.
T Consensus 294 ~Laf~s~~~g~~~ly~~~~~------------------------------~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf 343 (428)
T PRK01029 294 RLVFVSNKDGRPRIYIMQID------------------------------PEGQSPRLLTKKYRNSSCPAWSPDGKKIAF 343 (428)
T ss_pred EEEEEECCCCCceEEEEECc------------------------------ccccceEEeccCCCCccceeECCCCCEEEE
Confidence 776554 5676666654400 011122334445566778999999998887
Q ss_pred EeCC---CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEE-EEeC--CCeEEEEcCCCceeeEeec
Q 003423 274 VSDD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII-TAGE--DCTCRVWGSDGKQLKMIKE 345 (821)
Q Consensus 274 ~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~-s~~~--dg~i~iwd~~~~~~~~~~~ 345 (821)
.+.+ ..|.+||+.+++. ..+......+....|+ ++.|+ ++.. ...+.++++++.....+..
T Consensus 344 ~~~~~g~~~I~v~dl~~g~~-----------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 344 CSVIKGVRQICVYDLATGRD-----------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred EEcCCCCcEEEEEECCCCCe-----------EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 6553 4689999988754 2333233345667787 35555 3333 3567788886555555544
Q ss_pred ccCCCeEEEEEecC
Q 003423 346 HIGRGIWRCLYDSL 359 (821)
Q Consensus 346 h~~~~i~~l~~~~~ 359 (821)
..+ .+...+|+|-
T Consensus 413 ~~g-~~~~p~Ws~~ 425 (428)
T PRK01029 413 GSG-EKRFPSWGAF 425 (428)
T ss_pred CCC-cccCceecCC
Confidence 444 3556677664
No 274
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=1.9e-07 Score=94.50 Aligned_cols=299 Identities=13% Similarity=0.188 Sum_probs=165.9
Q ss_pred eeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEe
Q 003423 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG 325 (821)
Q Consensus 246 ~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~ 325 (821)
.-.+..+.||...|..++--.+.+.+++++.|++|++|.++...-... +..+ ..++..|+.+|.++.|....-..++
T Consensus 725 ~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~-tsaC--QfTY~aHkk~i~~igfL~~lr~i~S 801 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIG-TSAC--QFTYQAHKKPIHDIGFLADLRSIAS 801 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccc-ccee--eeEhhhccCcccceeeeeccceeee
Confidence 345677889999999998777788999999999999999986432000 0011 1578899999999999854444456
Q ss_pred CCCeEEEEcC-CCceeeEeecc-cCCCeEEEEEec--CCCEEEEE-eCCCcEEEEEcCCcCCCcccCCccccccCCCcce
Q 003423 326 EDCTCRVWGS-DGKQLKMIKEH-IGRGIWRCLYDS--LSSLLVTA-GFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (821)
Q Consensus 326 ~dg~i~iwd~-~~~~~~~~~~h-~~~~i~~l~~~~--~~~~l~tg-~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 400 (821)
.||.|.+||. -|+.+..+... ....+..+..-+ +...++.| +...+|+++|-+.-. +....++
T Consensus 802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce------------~~~E~kV 869 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE------------WTCELKV 869 (1034)
T ss_pred ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc------------ceeeEEe
Confidence 7899999998 67666543221 111233333333 34445444 788999999975310 0011111
Q ss_pred EEeecCCcccceeccCCCCcceEEEEeecCCeEEE-EecCCcEEEEEecCCCcc-eeeEeeeccCCcceEEEeccCCCCC
Q 003423 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCDMDSV-NWNKILQVSEGMPIICMDLLSNEPK 478 (821)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~-~~~~g~~~~~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~ 478 (821)
.....| ...+++++..+.|..++ +-++|.+...+..+.... .|.++. | ++. .
T Consensus 870 cna~~P------------na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme---------c-dll----q 923 (1034)
T KOG4190|consen 870 CNAPGP------------NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME---------C-DLL----Q 923 (1034)
T ss_pred ccCCCC------------chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc---------c-hhh----h
Confidence 111111 24588999998775544 456777764433222211 133221 1 111 1
Q ss_pred CCCCCCcEEEEecCCccEEE-EEecCCCCCCcceeEEeeccC-ccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCC
Q 003423 479 YPCGIDDWVALGDGKGNMTI-VRVVGDVHTPQLSFTFTWSAG-IERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPF 556 (821)
Q Consensus 479 ~s~~~~~~l~~g~~~g~i~i-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 556 (821)
...|.+..++....|-.+.+ |...++..+ +.-.|. .+..... .-|.-|+++.....+.+|--....
T Consensus 924 laapsdq~L~~saldHslaVnWhaldgimh------~q~kpppepahflq------svgpSLV~a~~Gn~lgVYad~a~~ 991 (1034)
T KOG4190|consen 924 LAAPSDQALAQSALDHSLAVNWHALDGIMH------LQDKPPPEPAHFLQ------SVGPSLVTAQNGNILGVYADSAEL 991 (1034)
T ss_pred hcCchhHHHHhhcccceeEeeehhcCCeee------eccCCCCcchhhhh------ccCceeEEeccCcEEEEEecchhh
Confidence 11244455555555656655 553332221 111111 0110000 113557777666677887432211
Q ss_pred CcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEE
Q 003423 557 SSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVL 606 (821)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~i 606 (821)
. ....++ . -.+ ....+..|+++--|-+.-+..|+..|.|.+
T Consensus 992 h-a~stit---K-iR~----d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 992 H-AESTIT---K-IRP----DEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred h-hhhhhc---c-ccc----cccCCccceeeeccccchhhccCCCCceee
Confidence 0 000000 0 111 223566788888888888888999999886
No 275
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=4.1e-06 Score=90.91 Aligned_cols=199 Identities=12% Similarity=0.060 Sum_probs=112.6
Q ss_pred eccCCCCcEEEEEEeecCCCCCEEEEEEC-CC--cEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEE-EeeC
Q 003423 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIY 202 (821)
Q Consensus 127 ~~~~h~~~I~~~~~~~~~~~~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s-g~~d 202 (821)
.+..+...+.+..|+| +|+.|+..+. ++ .|.+||+.+++......... ...+..+ +||+..|+. .+.+
T Consensus 212 ~l~~~~~~~~~p~wSP---DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g--~~~~~~w---SPDG~~La~~~~~~ 283 (448)
T PRK04792 212 MLLRSPEPLMSPAWSP---DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG--INGAPRF---SPDGKKLALVLSKD 283 (448)
T ss_pred EeecCCCcccCceECC---CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC--CcCCeeE---CCCCCEEEEEEeCC
Confidence 4445667889999999 9998886653 33 58888988776432211111 1122333 578887764 5566
Q ss_pred CE--EEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeC-CCe
Q 003423 203 NE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRS 279 (821)
Q Consensus 203 g~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~-Dg~ 279 (821)
|. |.++|+. ... ...+..+.......+|+|||+.|+..+. ++.
T Consensus 284 g~~~Iy~~dl~---------------------------------tg~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~ 329 (448)
T PRK04792 284 GQPEIYVVDIA---------------------------------TKA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGK 329 (448)
T ss_pred CCeEEEEEECC---------------------------------CCC-eEECccCCCCccceEECCCCCEEEEEECCCCC
Confidence 65 6666665 221 2334445556677899999998766553 444
Q ss_pred --EEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeC-CCeEEE--EcCCCceeeEeecccCCCeE
Q 003423 280 --ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DCTCRV--WGSDGKQLKMIKEHIGRGIW 352 (821)
Q Consensus 280 --i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~-dg~i~i--wd~~~~~~~~~~~h~~~~i~ 352 (821)
|.++|+.+++. + .+...........|+ +++++..+. ++..++ +|+++.....+.... ...
T Consensus 330 ~~Iy~~dl~~g~~------~-----~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~--~d~ 396 (448)
T PRK04792 330 PQIYRVNLASGKV------S-----RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTR--LDE 396 (448)
T ss_pred ceEEEEECCCCCE------E-----EEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCC--CCC
Confidence 55556655543 1 221122223345676 456655443 454444 566444444443321 123
Q ss_pred EEEEecCCCEEEEEeC-CCc--EEEEEcCCc
Q 003423 353 RCLYDSLSSLLVTAGF-DSA--IKVHQFQAF 380 (821)
Q Consensus 353 ~l~~~~~~~~l~tg~~-dg~--I~iwd~~~~ 380 (821)
...|+|+|+.|+.... +|. +.+++.++.
T Consensus 397 ~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 397 SPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 4579999998766554 343 555666543
No 276
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.63 E-value=1.4e-07 Score=62.77 Aligned_cols=38 Identities=37% Similarity=0.594 Sum_probs=36.1
Q ss_pred eeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 003423 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (821)
Q Consensus 247 ~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd 284 (821)
+++.++.+|.+.|++|+|+|++++|+|++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 277
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.62 E-value=8.6e-06 Score=88.71 Aligned_cols=222 Identities=12% Similarity=0.047 Sum_probs=125.4
Q ss_pred CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE-c--CCeEEEEEEeecCCCCCCCCCcccc
Q 003423 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-G--EKRVKLFELNFELSPNSQYQPETCV 120 (821)
Q Consensus 44 ~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g--~~~v~i~~~~~~~~~~~~~~~~~~~ 120 (821)
..|.++|...+.. ..+... ...+....|+|++ + .++.+. . ...|.+|++..+.
T Consensus 170 ~~l~~~d~~g~~~-~~l~~~-~~~~~~p~~Spdg-------~---~la~~~~~~~~~~i~v~d~~~g~------------ 225 (417)
T TIGR02800 170 YELQVADYDGANP-QTITRS-REPILSPAWSPDG-------Q---KLAYVSFESGKPEIYVQDLATGQ------------ 225 (417)
T ss_pred ceEEEEcCCCCCC-EEeecC-CCceecccCCCCC-------C---EEEEEEcCCCCcEEEEEECCCCC------------
Confidence 3688888764433 334332 2247777787553 2 233222 2 2578888876442
Q ss_pred ccceeeeccCCCCcEEEEEEeecCCCCCEEEE-EECCC--cEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEE
Q 003423 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (821)
Q Consensus 121 ~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~ 197 (821)
...+..+...+.+++|+| +++.|+. .+.++ .|.+||+.++... .+..+.. ...+..+ ++++..|+
T Consensus 226 ----~~~~~~~~~~~~~~~~sp---Dg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~---s~dg~~l~ 293 (417)
T TIGR02800 226 ----REKVASFPGMNGAPAFSP---DGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPG-IDTEPSW---SPDGKSIA 293 (417)
T ss_pred ----EEEeecCCCCccceEECC---CCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCC-CCCCEEE---CCCCCEEE
Confidence 122333455677799999 9987764 44443 5888898876543 2322211 1122333 46787776
Q ss_pred EEee-CC--EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEE
Q 003423 198 SGTI-YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (821)
Q Consensus 198 sg~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~ 274 (821)
..+. .+ .|.++++. ... ...+..+...+....|+|+|++|+.+
T Consensus 294 ~~s~~~g~~~iy~~d~~---------------------------------~~~-~~~l~~~~~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 294 FTSDRGGSPQIYMMDAD---------------------------------GGE-VRRLTFRGGYNASPSWSPDGDLIAFV 339 (417)
T ss_pred EEECCCCCceEEEEECC---------------------------------CCC-EEEeecCCCCccCeEECCCCCEEEEE
Confidence 5443 34 46666655 111 22334455667788999999999888
Q ss_pred eCCC---eEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCC---eEEEEcCCCceeeEeecc
Q 003423 275 SDDR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEH 346 (821)
Q Consensus 275 s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg---~i~iwd~~~~~~~~~~~h 346 (821)
+.++ .|.+||+.++.. + .+... .......|+ ++.|+....++ .+.+.+.+++....+..+
T Consensus 340 ~~~~~~~~i~~~d~~~~~~------~-----~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~ 407 (417)
T TIGR02800 340 HREGGGFNIAVMDLDGGGE------R-----VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPLG 407 (417)
T ss_pred EccCCceEEEEEeCCCCCe------E-----EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCCC
Confidence 8775 788888877533 1 22211 122334566 45666655543 344555566665555544
Q ss_pred c
Q 003423 347 I 347 (821)
Q Consensus 347 ~ 347 (821)
.
T Consensus 408 ~ 408 (417)
T TIGR02800 408 N 408 (417)
T ss_pred C
Confidence 3
No 278
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.62 E-value=7.5e-06 Score=89.27 Aligned_cols=199 Identities=12% Similarity=0.026 Sum_probs=116.5
Q ss_pred eeccCCCCcEEEEEEeecCCCCCEEEEEECC---CcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEE-EEee
Q 003423 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTI 201 (821)
Q Consensus 126 ~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~ 201 (821)
+.+..+.+.+...+|+| +|+.|+..+.+ ..|.+||+.+++... +.... .......+ +||+..|+ +...
T Consensus 192 ~~l~~~~~~~~~p~wSp---DG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~-g~~~~~~~---SpDG~~la~~~~~ 263 (430)
T PRK00178 192 VTLLQSREPILSPRWSP---DGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFE-GLNGAPAW---SPDGSKLAFVLSK 263 (430)
T ss_pred eEEecCCCceeeeeECC---CCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCC-CCcCCeEE---CCCCCEEEEEEcc
Confidence 44556677899999999 99988776543 368899998876532 22111 11112333 57887776 4444
Q ss_pred CC--EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeC-CC
Q 003423 202 YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR 278 (821)
Q Consensus 202 dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~-Dg 278 (821)
+| .|.+||+. ... ...+..+........|+|||+.|+..+. ++
T Consensus 264 ~g~~~Iy~~d~~---------------------------------~~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g 309 (430)
T PRK00178 264 DGNPEIYVMDLA---------------------------------SRQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG 309 (430)
T ss_pred CCCceEEEEECC---------------------------------CCC-eEEcccCCCCcCCeEECCCCCEEEEEECCCC
Confidence 55 57777876 221 2234445555667899999998766554 33
Q ss_pred --eEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeC-CC--eEEEEcCCCceeeEeecccCCCe
Q 003423 279 --SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DC--TCRVWGSDGKQLKMIKEHIGRGI 351 (821)
Q Consensus 279 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~h~~~~i 351 (821)
.|.++++.+++. + .+...........|+ ++.++.... ++ .|.+||+.+.....+... . ..
T Consensus 310 ~~~iy~~d~~~g~~------~-----~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~-~-~~ 376 (430)
T PRK00178 310 KPQIYKVNVNGGRA------E-----RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT-S-LD 376 (430)
T ss_pred CceEEEEECCCCCE------E-----EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC-C-CC
Confidence 466667766543 1 111111222345666 456655543 33 577888854444444322 2 12
Q ss_pred EEEEEecCCCEEEEEeCC-C--cEEEEEcCC
Q 003423 352 WRCLYDSLSSLLVTAGFD-S--AIKVHQFQA 379 (821)
Q Consensus 352 ~~l~~~~~~~~l~tg~~d-g--~I~iwd~~~ 379 (821)
....|+|+|+.++..+.+ | .|.+++.++
T Consensus 377 ~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 377 ESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 356899999988776543 3 355556544
No 279
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.55 E-value=0.00048 Score=70.45 Aligned_cols=271 Identities=7% Similarity=-0.034 Sum_probs=146.9
Q ss_pred CcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee----------CCEEEEEEcccCCcccCCCCCCCcc
Q 003423 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI----------YNEIIVWKVDWEHVAPLLNSPEGNH 226 (821)
Q Consensus 157 ~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~----------dg~i~vwd~~~~~~~~~~~~~~~~~ 226 (821)
|.|.+.|..+++.+..+........ + + ++|+..++.+.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~--~-~---spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~--------------- 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP--V-V---ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ--------------- 85 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce--e-E---CCCCCEEEEEeccccccccCCCCCEEEEEECc---------------
Confidence 8899999999999888875544332 1 2 578877776654 7899999998
Q ss_pred cCCCCCCcceeeecccccceeeEEEEecCC-------CcEEEEEEcCCCCEEEEEe-C-CCeEEEEecccCcccCCCCce
Q 003423 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-------GSIFRIEWSSCGSKLVSVS-D-DRSARIWEVRAEYWKDSDSIE 297 (821)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-------~~I~~l~~s~~~~~l~s~s-~-Dg~i~iwd~~~~~~~~~~~~~ 297 (821)
+.+.+.++.-.. ..-..++++|||++|+... . +..|-+.|+.+++. +.
T Consensus 86 ------------------t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-----v~ 142 (352)
T TIGR02658 86 ------------------THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-----VR 142 (352)
T ss_pred ------------------cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE-----EE
Confidence 445555444211 1234688999999888665 3 78999999999876 43
Q ss_pred eeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC--CCceee-Eeec-cc-CCCe-EEEEEec-CCCEEEEEeCCC
Q 003423 298 EVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS--DGKQLK-MIKE-HI-GRGI-WRCLYDS-LSSLLVTAGFDS 370 (821)
Q Consensus 298 ~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~--~~~~~~-~~~~-h~-~~~i-~~l~~~~-~~~~l~tg~~dg 370 (821)
++. - .....-...++.....-+.||......+ +|+... ...- +. ..++ ..-.+.+ +++++..... |
T Consensus 143 ei~-----v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G 215 (352)
T TIGR02658 143 MMD-----V-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-G 215 (352)
T ss_pred EEe-----C-CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-C
Confidence 331 1 1111222223333334455666655444 343111 1110 11 0000 0003455 7888877766 9
Q ss_pred cEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEE-ecCCc-------E
Q 003423 371 AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGY-------L 442 (821)
Q Consensus 371 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~-~~~g~-------~ 442 (821)
.|.+.|+.+....... .+... .... ..-.-......-++++++++.+.. ...+. -
T Consensus 216 ~V~~id~~~~~~~~~~-------------~~~~~--~~~~--~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~ 278 (352)
T TIGR02658 216 KIFQIDLSSGDAKFLP-------------AIEAF--TEAE--KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS 278 (352)
T ss_pred eEEEEecCCCcceecc-------------eeeec--cccc--cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence 9999998543221110 00000 0000 000011233455999988754444 32111 0
Q ss_pred EEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCc-EEEEec-CCccEEEEEecCCC
Q 003423 443 YHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDD-WVALGD-GKGNMTIVRVVGDV 505 (821)
Q Consensus 443 ~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~-~l~~g~-~~g~i~i~~~~~~~ 505 (821)
..+.+.+..+.+ .+........+..+.+.+ +++ ++.+.+ .++.|.++|..+.+
T Consensus 279 ~~V~ViD~~t~k--vi~~i~vG~~~~~iavS~--------Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 279 RFLFVVDAKTGK--RLRKIELGHEIDSINVSQ--------DAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CEEEEEECCCCe--EEEEEeCCCceeeEEECC--------CCCeEEEEeCCCCCcEEEEECcCCe
Confidence 122344444433 344444455666677655 345 555555 57889999976654
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=2.8e-07 Score=93.38 Aligned_cols=230 Identities=17% Similarity=0.164 Sum_probs=147.6
Q ss_pred eEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc
Q 003423 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 89 ~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
..+.++.|++|++|.++.+..... .-....+++.|+.+|.++.|.. +-++++++ ||.|.+||.--+.
T Consensus 749 SFiSASkDKTVKLWSik~EgD~~~--------tsaCQfTY~aHkk~i~~igfL~---~lr~i~Sc--D~giHlWDPFigr 815 (1034)
T KOG4190|consen 749 SFISASKDKTVKLWSIKPEGDEIG--------TSACQFTYQAHKKPIHDIGFLA---DLRSIASC--DGGIHLWDPFIGR 815 (1034)
T ss_pred ceeeccCCceEEEEEeccccCccc--------cceeeeEhhhccCcccceeeee---ccceeeec--cCcceeecccccc
Confidence 477778899999999986542111 1346678899999999999998 88888876 8999999988777
Q ss_pred eeEEEcc-Cc---ceeEEEEeeccCCccCeEEEE-EeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccc
Q 003423 169 IILEVHS-PE---RCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (821)
Q Consensus 169 ~~~~~~~-~~---~~~~~s~~~~~~s~~~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (821)
.+.++.. +. ...+..+. +-+..++.+ ++...+++++|.+..+
T Consensus 816 ~Laq~~dapk~~a~~~ikcl~----nv~~~iliAgcsaeSTVKl~DaRsce----------------------------- 862 (1034)
T KOG4190|consen 816 LLAQMEDAPKEGAGGNIKCLE----NVDRHILIAGCSAESTVKLFDARSCE----------------------------- 862 (1034)
T ss_pred hhHhhhcCcccCCCceeEecc----cCcchheeeeccchhhheeeeccccc-----------------------------
Confidence 6654431 11 11222221 224444444 4788999999987100
Q ss_pred cce-eeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEE-EcCCEE
Q 003423 244 HTA-VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC-LTDSFI 321 (821)
Q Consensus 244 ~~~-~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~-~~~~~l 321 (821)
+.. -.+..-.+..+-+.+++..+.|+.++.+-..|+|.+.|.++++. +. ...........++ .++..+
T Consensus 863 ~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v-----IN-----swrpmecdllqlaapsdq~L 932 (1034)
T KOG4190|consen 863 WTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV-----IN-----SWRPMECDLLQLAAPSDQAL 932 (1034)
T ss_pred ceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce-----ec-----cCCcccchhhhhcCchhHHH
Confidence 000 11222245667899999999999999999999999999999875 21 1111111122222 235677
Q ss_pred EEEeCCCeEEE-EcC-CCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 322 ITAGEDCTCRV-WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 322 ~s~~~dg~i~i-wd~-~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
+....|.++.+ |.. +|....+.+.... +..-+ ..-|.-++++.....+.+|.-
T Consensus 933 ~~saldHslaVnWhaldgimh~q~kpppe-pahfl--qsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 933 AQSALDHSLAVNWHALDGIMHLQDKPPPE-PAHFL--QSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred HhhcccceeEeeehhcCCeeeeccCCCCc-chhhh--hccCceeEEeccCcEEEEEec
Confidence 88888889988 886 6655444443332 11111 123566777766666777754
No 281
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.50 E-value=3e-05 Score=84.52 Aligned_cols=231 Identities=11% Similarity=0.028 Sum_probs=125.5
Q ss_pred eEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE-cC--CeEEEEEEeecCCCCCCCCCccccc
Q 003423 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GE--KRVKLFELNFELSPNSQYQPETCVN 121 (821)
Q Consensus 45 ~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g~--~~v~i~~~~~~~~~~~~~~~~~~~~ 121 (821)
.|.++|.+.+.. ..+..+ ...+....|+|++ + .++.+. .+ ..|.+|++..+.
T Consensus 180 ~l~~~d~~g~~~-~~l~~~-~~~~~~p~wSpDG-------~---~la~~s~~~~~~~l~~~~l~~g~------------- 234 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQS-REPILSPRWSPDG-------K---RIAYVSFEQKRPRIFVQNLDTGR------------- 234 (430)
T ss_pred EEEEECCCCCCc-eEEecC-CCceeeeeECCCC-------C---EEEEEEcCCCCCEEEEEECCCCC-------------
Confidence 588888875543 333332 3367888888664 2 333333 22 467777776442
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEE-EECCC--cEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEE
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (821)
.+. +....+.+...+|+| +|+.|+. ...++ .|.+||+.++... .+..+. ....+..| ++|+..|+.
T Consensus 235 ~~~---l~~~~g~~~~~~~Sp---DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~-~~~~~~~~---spDg~~i~f 303 (430)
T PRK00178 235 REQ---ITNFEGLNGAPAWSP---DGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHP-AIDTEPFW---GKDGRTLYF 303 (430)
T ss_pred EEE---ccCCCCCcCCeEECC---CCCEEEEEEccCCCceEEEEECCCCCeE-EcccCC-CCcCCeEE---CCCCCEEEE
Confidence 122 222334455789999 9988774 44444 5888898877643 333222 12223333 577776655
Q ss_pred Ee-eCC--EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEe
Q 003423 199 GT-IYN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (821)
Q Consensus 199 g~-~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s 275 (821)
.+ .+| .|.++++.++ ....+ ...+ .......|+|+|++|+..+
T Consensus 304 ~s~~~g~~~iy~~d~~~g-------------------------------~~~~l-t~~~--~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 304 TSDRGGKPQIYKVNVNGG-------------------------------RAERV-TFVG--NYNARPRLSADGKTLVMVH 349 (430)
T ss_pred EECCCCCceEEEEECCCC-------------------------------CEEEe-ecCC--CCccceEECCCCCEEEEEE
Confidence 44 344 4556665410 11111 1112 2234578999999987766
Q ss_pred CC-C--eEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEe-CCC--eEEEEcCCCceeeEeeccc
Q 003423 276 DD-R--SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-EDC--TCRVWGSDGKQLKMIKEHI 347 (821)
Q Consensus 276 ~D-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~h~ 347 (821)
.+ + .|.+||+.+++. + .+. +........|+ +..++..+ .++ .+.+++.+|.....+..+.
T Consensus 350 ~~~~~~~l~~~dl~tg~~------~-----~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~ 417 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSV------R-----ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQ 417 (430)
T ss_pred ccCCceEEEEEECCCCCE------E-----Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCC
Confidence 43 3 577888877643 1 111 11111234566 45555444 333 4566666776666665554
Q ss_pred CCCeEEEEEec
Q 003423 348 GRGIWRCLYDS 358 (821)
Q Consensus 348 ~~~i~~l~~~~ 358 (821)
+ .+...+|+|
T Consensus 418 g-~~~~p~ws~ 427 (430)
T PRK00178 418 G-EVREPSWSP 427 (430)
T ss_pred C-CcCCCccCC
Confidence 4 366666665
No 282
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.49 E-value=2.4e-06 Score=78.88 Aligned_cols=111 Identities=14% Similarity=0.245 Sum_probs=74.5
Q ss_pred cCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcC-CCCE
Q 003423 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSK 270 (821)
Q Consensus 192 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~~~ 270 (821)
...++++|+.||.+-+||++. -..+...+++|+.+|+.+.|+| ++..
T Consensus 191 qq~~v~cgt~dg~~~l~d~rn--------------------------------~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 191 QQHLVCCGTDDGIVGLWDARN--------------------------------VAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cccEEEEecCCCeEEEEEccc--------------------------------ccchHHHHHHhhhhhhheeccCCCchh
Confidence 567889999999999999981 2234455679999999999999 5678
Q ss_pred EEEEeCCCeEEEEecccCccc------------CCCCcee-eec-eEEeccceeEEEEEEcCCEEEEEeCCCeEEEEc
Q 003423 271 LVSVSDDRSARIWEVRAEYWK------------DSDSIEE-VGS-SVLYGHNARVWDCCLTDSFIITAGEDCTCRVWG 334 (821)
Q Consensus 271 l~s~s~Dg~i~iwd~~~~~~~------------~~~~~~~-~~~-~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd 334 (821)
|++|+.||.+..||..+.-.. ..+.++. +.. ..+......|.++...+..|++|+.-+.|.+.+
T Consensus 239 Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred eeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 999999999999998852211 0001110 000 011122233455555577888888777777654
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.48 E-value=2.9e-06 Score=83.57 Aligned_cols=157 Identities=13% Similarity=0.057 Sum_probs=96.6
Q ss_pred CCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccc
Q 003423 482 GIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCY 561 (821)
Q Consensus 482 ~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 561 (821)
+.+.++|++..+....++++.......+..... .-+.. ...+..+ .+......+..-|.++-+|+-.... .
T Consensus 72 ~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~---~~ai~~~--~~~~sv~v~dkagD~~~~di~s~~~-~-- 142 (390)
T KOG3914|consen 72 DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKR---PTAISFI--REDTSVLVADKAGDVYSFDILSADS-G-- 142 (390)
T ss_pred CCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccC---cceeeee--eccceEEEEeecCCceeeeeecccc-c--
Confidence 567899999988888888876543211111111 11111 1111111 1223333444444444444332110 0
Q ss_pred cCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccCCcceE
Q 003423 562 ESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVS 641 (821)
Q Consensus 562 ~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt 641 (821)
.+.. .-+|-..++.++++||+++++++++|+.|++-.+... ..+..|.-.| ++-|.
T Consensus 143 --------~~~~--~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~-------------f~IesfclGH-~eFVS 198 (390)
T KOG3914|consen 143 --------RCEP--ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-------------FVIESFCLGH-KEFVS 198 (390)
T ss_pred --------Ccch--hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc-------------cchhhhcccc-Hhhee
Confidence 1111 3589999999999999999999999999999887632 2233443356 77899
Q ss_pred EEEEEecCCCceEEEEecCCCeEEEEEeecCCce
Q 003423 642 TLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRES 675 (821)
Q Consensus 642 ~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~ 675 (821)
.++..+ + ..|+|+|.|+++|+|++......
T Consensus 199 ~isl~~---~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 199 TISLTD---N-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eeeecc---C-ceeeecCCCCcEEEEecccCCcc
Confidence 998883 3 44899999999999999775543
No 284
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.48 E-value=0.00015 Score=77.93 Aligned_cols=274 Identities=8% Similarity=-0.027 Sum_probs=144.6
Q ss_pred cceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeE----EeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCC
Q 003423 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGI----SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSP 110 (821)
Q Consensus 35 ~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i----~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~ 110 (821)
+.+++.+.++.|.-+|.++|+.+-+.+.........- .++.. +...+ ..+++...++.+.-+|.++++
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~v~~----~~v~v~~~~g~l~ald~~tG~-- 141 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGG--VTVAG----GKVYIGSEKGQVYALNAEDGE-- 141 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccc--cEEEC----CEEEEEcCCCEEEEEECCCCC--
Confidence 4455555689999999999999887764321111110 00000 00011 245555567888888876553
Q ss_pred CCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeE----EEEee
Q 003423 111 NSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL----YSMKL 186 (821)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~s~~~ 186 (821)
.+.+.+.. +.+.+--.. .+..++.+..++.+.-+|..+|+.+-+......... .+..
T Consensus 142 -------------~~W~~~~~-~~~~ssP~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~- 202 (394)
T PRK11138 142 -------------VAWQTKVA-GEALSRPVV----SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA- 202 (394)
T ss_pred -------------CcccccCC-CceecCCEE----ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE-
Confidence 12221111 122221111 234566677889999999999998876653321100 0111
Q ss_pred ccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcC
Q 003423 187 WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS 266 (821)
Q Consensus 187 ~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 266 (821)
..+..++.++.+|.+...|..+++..-..... . + ........ ...+.-+|
T Consensus 203 ----v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~---~--~--------------~~~~~~~~-------~~~~~~sP 252 (394)
T PRK11138 203 ----TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRIS---Q--P--------------TGATEIDR-------LVDVDTTP 252 (394)
T ss_pred ----EECCEEEEEcCCCEEEEEEccCChhhheeccc---c--C--------------CCccchhc-------ccccCCCc
Confidence 12234666778899888887732211100000 0 0 00000000 00111112
Q ss_pred --CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC-CCceeeEe
Q 003423 267 --CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMI 343 (821)
Q Consensus 267 --~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~ 343 (821)
.+..++.++.++.+...|..+++. . .... ......+...++.++.++.+|.+..+|. +|+.+-..
T Consensus 253 ~v~~~~vy~~~~~g~l~ald~~tG~~-----~------W~~~-~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 253 VVVGGVVYALAYNGNLVALDLRSGQI-----V------WKRE-YGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred EEECCEEEEEEcCCeEEEEECCCCCE-----E------Eeec-CCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 245677777889999999988764 1 1111 1111223445788888999999999999 66654433
Q ss_pred ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 344 KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 344 ~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
.........+..+ .+..|+.++.||.+...|..+
T Consensus 321 ~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 321 SDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred cccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 2211111222222 256788899999999998743
No 285
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.47 E-value=0.00074 Score=62.99 Aligned_cols=139 Identities=10% Similarity=-0.006 Sum_probs=90.3
Q ss_pred CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEEEcC-CCceeeEeecc
Q 003423 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (821)
Q Consensus 269 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h 346 (821)
.+++.|+-.+.+.--|..++.. ....--..+|-+-+.. +++++.|...|.+.+.+. +|.....+...
T Consensus 24 T~v~igSHs~~~~avd~~sG~~-----------~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNL-----------IWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred eEEEEecCCceEEEecCCCCcE-----------EeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence 4667777788888888877764 2222234455443333 788999999999999998 77666666544
Q ss_pred cCCCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCc-CCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEE
Q 003423 347 IGRGIW-RCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRC 424 (821)
Q Consensus 347 ~~~~i~-~l~~~~~~~~l~tg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 424 (821)
.. |. ....++++..+..|+.|+.....|.... ++.+.+- + .....+
T Consensus 93 ~~--vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc------------------g------------G~~f~s 140 (354)
T KOG4649|consen 93 ET--VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC------------------G------------GGTFVS 140 (354)
T ss_pred hh--hccceEEcCCCceEEEecCCCcEEEecccccceEEeccc------------------C------------Cceecc
Confidence 33 22 3456788999999999999999998542 2211110 0 111222
Q ss_pred EEeec-CCeEEEEecCCcEEEEEecCC
Q 003423 425 LHLTS-EDTLYIATNHGYLYHTKLCDM 450 (821)
Q Consensus 425 l~f~~-~~~~l~~~~~g~~~~~~i~~~ 450 (821)
-+..+ ++.+++++..|.+..+...+.
T Consensus 141 P~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 141 PVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred ceecCCCceEEEEeccceEEEEccCCC
Confidence 33444 678888888888876655443
No 286
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.47 E-value=8.2e-05 Score=75.74 Aligned_cols=271 Identities=12% Similarity=0.122 Sum_probs=162.5
Q ss_pred eeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcC-
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE- 96 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~- 96 (821)
-|++.+++| |. +.+|++..-..|.+|+-..+..+.++.. ..|..+.|+|.+ .+|.+|..
T Consensus 33 ~p~~~~~~S--P~----G~~l~~~~~~~V~~~~g~~~~~l~~~~~---~~V~~~~fSP~~-----------kYL~tw~~~ 92 (561)
T COG5354 33 WPVAYVSES--PL----GTYLFSEHAAGVECWGGPSKAKLVRFRH---PDVKYLDFSPNE-----------KYLVTWSRE 92 (561)
T ss_pred cchhheeec--Cc----chheehhhccceEEccccchhheeeeec---CCceecccCccc-----------ceeeeeccC
Confidence 468899999 98 7888888888899999888776665553 348888888764 46666642
Q ss_pred ---------------CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCc--EE-EEEEeecCCCCCEEEEEECCCc
Q 003423 97 ---------------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW--VF-DVCFLKVCNGNRSLAIGCSDNS 158 (821)
Q Consensus 97 ---------------~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--I~-~~~~~~~~~~~~~l~t~~~d~~ 158 (821)
+.+.+||+..+ ..+..+.+-..+ .. -+.|+- +.+++|=- ....
T Consensus 93 pi~~pe~e~sp~~~~n~~~vwd~~sg---------------~iv~sf~~~~q~~~~Wp~~k~s~---~D~y~ARv-v~~s 153 (561)
T COG5354 93 PIIEPEIEISPFTSKNNVFVWDIASG---------------MIVFSFNGISQPYLGWPVLKFSI---DDKYVARV-VGSS 153 (561)
T ss_pred CccChhhccCCccccCceeEEeccCc---------------eeEeeccccCCcccccceeeeee---cchhhhhh-ccCe
Confidence 35788887754 344444444333 33 467776 66665533 2457
Q ss_pred EEEEEccCCce----eEEEccCcceeEEEEeeccCCccCeEEEE-----EeeCCEEEEEEcccCCcccCCCCCCCcccCC
Q 003423 159 IRVWDISNSSI----ILEVHSPERCLLYSMKLWGDNLEALRIAS-----GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (821)
Q Consensus 159 i~iwd~~~~~~----~~~~~~~~~~~~~s~~~~~~s~~~~~l~s-----g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 229 (821)
+.|+++ ++.. ...+. +.. +....+.+. .++..||. ++..+.+++|.+.
T Consensus 154 l~i~e~-t~n~~~~p~~~lr-~~g--i~dFsisP~-~n~~~la~~tPEk~~kpa~~~i~sIp------------------ 210 (561)
T COG5354 154 LYIHEI-TDNIEEHPFKNLR-PVG--ILDFSISPE-GNHDELAYWTPEKLNKPAMVRILSIP------------------ 210 (561)
T ss_pred EEEEec-CCccccCchhhcc-ccc--eeeEEecCC-CCCceEEEEccccCCCCcEEEEEEcc------------------
Confidence 999997 3322 11111 111 111112111 01222222 3345666666665
Q ss_pred CCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEe-----------CCCeEEEEecccCcccCCCCcee
Q 003423 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-----------DDRSARIWEVRAEYWKDSDSIEE 298 (821)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s-----------~Dg~i~iwd~~~~~~~~~~~~~~ 298 (821)
....+.+-.--...=..+.|.+.|++|+.-- ...++.|++++....
T Consensus 211 ---------------~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-------- 267 (561)
T COG5354 211 ---------------KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-------- 267 (561)
T ss_pred ---------------CCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc--------
Confidence 1112211111112224588888888654211 124577777775433
Q ss_pred eeceEEeccceeEEEEEEcC--C--EEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCC---Cc
Q 003423 299 VGSSVLYGHNARVWDCCLTD--S--FIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD---SA 371 (821)
Q Consensus 299 ~~~~~~~~h~~~i~~v~~~~--~--~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~d---g~ 371 (821)
.......++|...+|.+ + -+++|-.+.++.++|+.++....+..... ..+.|+|.+++++.+|.| |.
T Consensus 268 ---~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~r---NT~~fsp~~r~il~agF~nl~gn 341 (561)
T COG5354 268 ---PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKR---NTIFFSPHERYILFAGFDNLQGN 341 (561)
T ss_pred ---ceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCccc---ccccccCcccEEEEecCCccccc
Confidence 23336688999999963 3 34455688999999998885555543332 467899999999998876 67
Q ss_pred EEEEEcCC
Q 003423 372 IKVHQFQA 379 (821)
Q Consensus 372 I~iwd~~~ 379 (821)
|.+||..+
T Consensus 342 i~i~~~~~ 349 (561)
T COG5354 342 IEIFDPAG 349 (561)
T ss_pred eEEeccCC
Confidence 88888744
No 287
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=3.6e-05 Score=82.85 Aligned_cols=205 Identities=12% Similarity=-0.018 Sum_probs=114.3
Q ss_pred eccCCCCcEEEEEEeecCCCCCEE---EEEECCC--cEEEEEccCCceeE--EEccCcceeEEEEeeccCCccCeEEEEE
Q 003423 127 SLPRLSHWVFDVCFLKVCNGNRSL---AIGCSDN--SIRVWDISNSSIIL--EVHSPERCLLYSMKLWGDNLEALRIASG 199 (821)
Q Consensus 127 ~~~~h~~~I~~~~~~~~~~~~~~l---~t~~~d~--~i~iwd~~~~~~~~--~~~~~~~~~~~s~~~~~~s~~~~~l~sg 199 (821)
.+......+..-+|+| ||+.+ ++...++ .|.+.++.+++..+ .+.+.. ....+ +||+..||..
T Consensus 179 ~lt~~~~~~~sP~wSP---DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~----~~p~w---SPDG~~Laf~ 248 (428)
T PRK01029 179 PLTQEHSLSITPTWMH---IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQ----LMPTF---SPRKKLLAFI 248 (428)
T ss_pred EcccCCCCcccceEcc---CCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCc----cceEE---CCCCCEEEEE
Confidence 3444455677889999 98743 2444444 47777887765432 222222 22333 5899777754
Q ss_pred ee-CC----EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEE
Q 003423 200 TI-YN----EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (821)
Q Consensus 200 ~~-dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~ 274 (821)
.. +| .+..|++... ..........++.+.....+|+|||+.|+..
T Consensus 249 s~~~g~~di~~~~~~~~~g------------------------------~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~ 298 (428)
T PRK01029 249 SDRYGNPDLFIQSFSLETG------------------------------AIGKPRRLLNEAFGTQGNPSFSPDGTRLVFV 298 (428)
T ss_pred ECCCCCcceeEEEeecccC------------------------------CCCcceEeecCCCCCcCCeEECCCCCEEEEE
Confidence 42 33 2333555410 0111222222333445678999999988766
Q ss_pred e-CCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC---CeEEEEcCCCceeeEeecccC
Q 003423 275 S-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIG 348 (821)
Q Consensus 275 s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d---g~i~iwd~~~~~~~~~~~h~~ 348 (821)
+ .+|...+|.+..... .... ..+..+...+....|+ ++.|+..+.+ ..|.+||+++.....+.....
T Consensus 299 s~~~g~~~ly~~~~~~~-----g~~~--~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~ 371 (428)
T PRK01029 299 SNKDGRPRIYIMQIDPE-----GQSP--RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPE 371 (428)
T ss_pred ECCCCCceEEEEECccc-----ccce--EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCC
Confidence 5 467666665432100 0000 2333444556677888 4666655432 468899995554555544333
Q ss_pred CCeEEEEEecCCCEEEEEeC---CCcEEEEEcCC
Q 003423 349 RGIWRCLYDSLSSLLVTAGF---DSAIKVHQFQA 379 (821)
Q Consensus 349 ~~i~~l~~~~~~~~l~tg~~---dg~I~iwd~~~ 379 (821)
.+....|+|+|+.|+.... ...|.++++++
T Consensus 372 -~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 372 -NKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred -CccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 4678899999998775433 34577777754
No 288
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.45 E-value=0.00011 Score=74.09 Aligned_cols=191 Identities=10% Similarity=0.059 Sum_probs=120.2
Q ss_pred CcceEEeecCCeEEEEECCCCeeeeEEEee-------c-cccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEe
Q 003423 34 SLPFLLAGSGSQVLLYDLEAGTLIRPFQVF-------H-GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELN 105 (821)
Q Consensus 34 ~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~-------~-~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~ 105 (821)
.++.++-...|.|.+||.++..+ ..+... + ..-+.-..+..+...... .+++....|.+-|.+..
T Consensus 277 DGkrIvFq~~GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyledfa~~~G------d~ia~VSRGkaFi~~~~ 349 (668)
T COG4946 277 DGKRIVFQNAGDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNG------DYIALVSRGKAFIMRPW 349 (668)
T ss_pred CCcEEEEecCCcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhhhccCCC------cEEEEEecCcEEEECCC
Confidence 46788888889999999987543 222211 0 000111111111111111 25555555666665533
Q ss_pred ecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCC-cEEEEEccCCceeEEEccCcceeEEEE
Q 003423 106 FELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN-SIRVWDISNSSIILEVHSPERCLLYSM 184 (821)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~s~ 184 (821)
.+ ... --+|...|.-..+.- +++-++.|..|| .+-|+|..+++..+ +...- ..+.++
T Consensus 350 ~~----------------~~i-qv~~~~~VrY~r~~~---~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~l-g~I~av 407 (668)
T COG4946 350 DG----------------YSI-QVGKKGGVRYRRIQV---DPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDL-GNIEAV 407 (668)
T ss_pred CC----------------eeE-EcCCCCceEEEEEcc---CCcceEEeccCCceEEEEecCCceEEE-eeCCc-cceEEE
Confidence 21 111 125667788888877 777889999999 89999988876433 22222 235666
Q ss_pred eeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEE
Q 003423 185 KLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEW 264 (821)
Q Consensus 185 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 264 (821)
.. ++++..++.+....+|.+.|+. ++.....-+...+-|+...|
T Consensus 408 ~v---s~dGK~~vvaNdr~el~vidid---------------------------------ngnv~~idkS~~~lItdf~~ 451 (668)
T COG4946 408 KV---SPDGKKVVVANDRFELWVIDID---------------------------------NGNVRLIDKSEYGLITDFDW 451 (668)
T ss_pred EE---cCCCcEEEEEcCceEEEEEEec---------------------------------CCCeeEecccccceeEEEEE
Confidence 65 6899999999988999999988 33332223456778999999
Q ss_pred cCCCCEEEEEeCC----CeEEEEecccCc
Q 003423 265 SSCGSKLVSVSDD----RSARIWEVRAEY 289 (821)
Q Consensus 265 s~~~~~l~s~s~D----g~i~iwd~~~~~ 289 (821)
+|+++++|-+--+ +.|+++|+..++
T Consensus 452 ~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 452 HPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred cCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 9999998876555 468888887654
No 289
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.43 E-value=4.5e-06 Score=90.37 Aligned_cols=180 Identities=11% Similarity=0.115 Sum_probs=131.6
Q ss_pred CCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCc
Q 003423 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (821)
Q Consensus 146 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 225 (821)
++..++.|+-...+..+|+.+.+..+........ +.-|+ .++..+.+|...|+|.+-|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-v~imR-----~Nnr~lf~G~t~G~V~LrD~~-------------- 205 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-VTIMR-----YNNRNLFCGDTRGTVFLRDPN-------------- 205 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc-eEEEE-----ecCcEEEeecccceEEeecCC--------------
Confidence 3455677777778888999888776655433321 33343 367899999999999999998
Q ss_pred ccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeC---------CCeEEEEecccCcccCCCCc
Q 003423 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---------DRSARIWEVRAEYWKDSDSI 296 (821)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~---------Dg~i~iwd~~~~~~~~~~~~ 296 (821)
+.+.++++.+|++.|..+.. .|+.|+|||. |..|+|||++..+. +
T Consensus 206 -------------------s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-----l 259 (1118)
T KOG1275|consen 206 -------------------SFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-----L 259 (1118)
T ss_pred -------------------cCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhc-----c
Confidence 78899999999999987665 6889999985 67789999998765 3
Q ss_pred eeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcC---CCceeeEeecc-cCCCeEEEEEecCCCEEEEEeCC
Q 003423 297 EEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS---DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFD 369 (821)
Q Consensus 297 ~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~---~~~~~~~~~~h-~~~~i~~l~~~~~~~~l~tg~~d 369 (821)
.++. -+..+ .-+.|+ ...++.++..|.+.+-|. .......+.-+ .+..+..+++++++..++.|..+
T Consensus 260 ~PI~-----~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~ 333 (1118)
T KOG1275|consen 260 SPIQ-----FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHE 333 (1118)
T ss_pred CCcc-----cccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEeccc
Confidence 3221 11111 234455 368899999999999994 32223332222 22248999999999999999999
Q ss_pred CcEEEEEc
Q 003423 370 SAIKVHQF 377 (821)
Q Consensus 370 g~I~iwd~ 377 (821)
|.|.+|.-
T Consensus 334 g~v~~wa~ 341 (1118)
T KOG1275|consen 334 GHVNLWAD 341 (1118)
T ss_pred CcEeeecC
Confidence 99999974
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.41 E-value=5.6e-05 Score=70.42 Aligned_cols=248 Identities=10% Similarity=-0.004 Sum_probs=145.8
Q ss_pred EEEEEeccCCCC-CCcceEEee-cCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCe
Q 003423 21 SALCFVHLPSHL-SSLPFLLAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (821)
Q Consensus 21 t~l~~~~~p~~~-~~~~~l~~g-~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~ 98 (821)
+.+.|. |..+ +.-.+|++| ..|...+|...+.+....+-.- .+.++.+....|-.. ..++.+.-|.+
T Consensus 71 ~g~~F~--p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~---snn~v~~~~r~cd~~------~~~~i~sndht 139 (344)
T KOG4532|consen 71 TGMTFT--PGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDV---SNNDVTLVKRYCDLK------FPLNIASNDHT 139 (344)
T ss_pred eccccc--chHhhccccEEEeccccceeeeecccCcccceeeecc---cccchhhhhhhcccc------cceeeccCCcc
Confidence 456666 5311 112467776 5799999999977654332211 223333332221111 24777778999
Q ss_pred EEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc-eeEE-EccC
Q 003423 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILE-VHSP 176 (821)
Q Consensus 99 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~-~~~~-~~~~ 176 (821)
+++.+++.+.. +.....+. -.+.++++++ +++++++.+....|-.|.+.... .+.. ...+
T Consensus 140 ~k~~~~~~~s~-------------~~~~h~~~--~~~ns~~~sn---d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~ 201 (344)
T KOG4532|consen 140 GKTMVVSGDSN-------------KFAVHNQN--LTQNSLHYSN---DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP 201 (344)
T ss_pred eeEEEEecCcc-------------cceeeccc--cceeeeEEcC---CCceEEEecCCCcceEEEeCCccceeeeeEecc
Confidence 99999885531 11111111 1278899999 99999999999999999987543 2322 2233
Q ss_pred cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCC
Q 003423 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (821)
Q Consensus 177 ~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 256 (821)
...--++..+ +.....+|+++.||.+.|||++.-.. ++ ...-.+-..|.
T Consensus 202 t~D~gF~~S~---s~~~~~FAv~~Qdg~~~I~DVR~~~t-------pm---------------------~~~sstrp~hn 250 (344)
T KOG4532|consen 202 TSDHGFYNSF---SENDLQFAVVFQDGTCAIYDVRNMAT-------PM---------------------AEISSTRPHHN 250 (344)
T ss_pred cCCCceeeee---ccCcceEEEEecCCcEEEEEeccccc-------ch---------------------hhhcccCCCCC
Confidence 3222333333 56788999999999999999982111 00 00111123599
Q ss_pred CcEEEEEEcCCCC--E-EEEEeCCCeEEEEecccCcccCCCCceeeec--eEEecccee-EEEEEEc--CCEEEEEeCCC
Q 003423 257 GSIFRIEWSSCGS--K-LVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNAR-VWDCCLT--DSFIITAGEDC 328 (821)
Q Consensus 257 ~~I~~l~~s~~~~--~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~h~~~-i~~v~~~--~~~l~s~~~dg 328 (821)
|++..+.|++.|. + ++|-.. +.+.+-|+++... .+.+.+ .....|... |...+|. +..+.+..++
T Consensus 251 Ga~R~c~Fsl~g~lDLLf~sEhf-s~~hv~D~R~~~~-----~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~- 323 (344)
T KOG4532|consen 251 GAFRVCRFSLYGLLDLLFISEHF-SRVHVVDTRNYVN-----HQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL- 323 (344)
T ss_pred CceEEEEecCCCcceEEEEecCc-ceEEEEEcccCce-----eeEEecCccccccccccccccccccCCCcccccccch-
Confidence 9999999998664 3 444443 6789999998765 443321 233334433 7777776 3444444433
Q ss_pred eEEEEcC
Q 003423 329 TCRVWGS 335 (821)
Q Consensus 329 ~i~iwd~ 335 (821)
.+.-|++
T Consensus 324 ~~ae~ni 330 (344)
T KOG4532|consen 324 QGAEYNI 330 (344)
T ss_pred hhheeec
Confidence 2333444
No 291
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.40 E-value=8.8e-07 Score=58.90 Aligned_cols=38 Identities=32% Similarity=0.492 Sum_probs=35.8
Q ss_pred ceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEE
Q 003423 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (821)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd 163 (821)
+++..+.+|.+.|++++|+| ++++|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~---~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSP---DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEET---TSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEec---ccccceeeCCCCEEEEEC
Confidence 46788999999999999999 999999999999999997
No 292
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.39 E-value=0.0005 Score=65.47 Aligned_cols=230 Identities=11% Similarity=0.077 Sum_probs=120.5
Q ss_pred EEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce
Q 003423 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (821)
Q Consensus 90 ~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~ 169 (821)
++|+.-|..|.|=....+-. .+..+. ...+.-.-.=+-++||| |+.+||.+...|+|+++|+....
T Consensus 11 ~lAi~qd~~iEiRsa~Ddf~---------si~~kc-qVpkD~~PQWRkl~WSp---D~tlLa~a~S~G~i~vfdl~g~~- 76 (282)
T PF15492_consen 11 LLAILQDQCIEIRSAKDDFS---------SIIGKC-QVPKDPNPQWRKLAWSP---DCTLLAYAESTGTIRVFDLMGSE- 76 (282)
T ss_pred EEEEEeccEEEEEeccCCch---------heeEEE-ecCCCCCchheEEEECC---CCcEEEEEcCCCeEEEEecccce-
Confidence 77777777777765543320 000111 11111112347799999 99999999999999999987533
Q ss_pred eEEEccC------cceeEEEEeeccCCcc---CeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeec
Q 003423 170 ILEVHSP------ERCLLYSMKLWGDNLE---ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (821)
Q Consensus 170 ~~~~~~~------~~~~~~s~~~~~~s~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (821)
+..+... ..+.+-.+.|.....+ ...|.+-+.+|.++-+-+..+.
T Consensus 77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt-------------------------- 130 (282)
T PF15492_consen 77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGT-------------------------- 130 (282)
T ss_pred eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEccc--------------------------
Confidence 3333321 1223334444332111 1234444556666665543000
Q ss_pred ccccceeeEEEEec-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--
Q 003423 241 DQQHTAVNLFRLVG-HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-- 317 (821)
Q Consensus 241 ~~~~~~~~~~~~~~-h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-- 317 (821)
.........+.+.. +...|.++.++|..++|+.||.... +++. -.+-...+++-...
T Consensus 131 ~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~--------------s~a~~~GLtaWRiL~~ 190 (282)
T PF15492_consen 131 NQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM--------------SKASSCGLTAWRILSD 190 (282)
T ss_pred CCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc--------------ccccccCceEEEEcCC
Confidence 00112233344443 4788999999999888776654321 1100 00111111111111
Q ss_pred -CCEE-EEEeCCCe------EEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 318 -DSFI-ITAGEDCT------CRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 318 -~~~l-~s~~~dg~------i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
|-+. ++..+|+. ..+|.+-.......++.....|..|.++|||+.||+...+|.|.+|++..
T Consensus 191 ~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 191 SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred CCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 2111 22222322 12333311111112222233699999999999999999999999999954
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.37 E-value=0.00011 Score=69.87 Aligned_cols=201 Identities=12% Similarity=0.154 Sum_probs=112.6
Q ss_pred EEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEee------ccccEEeEEeccccCCCCCCccceeeEEEE
Q 003423 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF------HGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (821)
Q Consensus 21 t~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~ 93 (821)
.-++|| || ..+||.+. .|+|++||+...+ +..+... -...|.++.|.+.. .+.+-...++++
T Consensus 47 Rkl~WS--pD----~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~----~s~~ws~ELlvi 115 (282)
T PF15492_consen 47 RKLAWS--PD----CTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYK----KSAQWSYELLVI 115 (282)
T ss_pred eEEEEC--CC----CcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccc----cccccceeEEEE
Confidence 368899 98 56666665 7999999987533 3333321 12457778776543 111111246666
Q ss_pred EcCCeEEEEEEeecCCCCCCCCCccccccceeeecc---CCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCcee
Q 003423 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP---RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (821)
Q Consensus 94 ~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~ 170 (821)
.-.|.++-|-+..+... ..+..+.+. .+...|.++.++| ..++|++|+.... +++.
T Consensus 116 ~Y~G~L~Sy~vs~gt~q----------~y~e~hsfsf~~~yp~Gi~~~vy~p---~h~LLlVgG~~~~------~~~~-- 174 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGTNQ----------GYQENHSFSFSSHYPHGINSAVYHP---KHRLLLVGGCEQN------QDGM-- 174 (282)
T ss_pred eccceeeeEEEEcccCC----------cceeeEEEEecccCCCceeEEEEcC---CCCEEEEeccCCC------CCcc--
Confidence 67888888887643211 133333332 2477999999999 8788887764322 0000
Q ss_pred EEEccCcceeEEEEeeccCCccCeEEEEEeeCCE------EEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccccc
Q 003423 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE------IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (821)
Q Consensus 171 ~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (821)
.....+.+.+-+....+|.-..+. ...++. -.+|.+-
T Consensus 175 ---s~a~~~GLtaWRiL~~~Pyyk~v~-~~~~~~~~~~~~~~~~~~~--------------------------------- 217 (282)
T PF15492_consen 175 ---SKASSCGLTAWRILSDSPYYKQVT-SSEDDITASSKRRGLLRIP--------------------------------- 217 (282)
T ss_pred ---ccccccCceEEEEcCCCCcEEEcc-ccCccccccccccceeecc---------------------------------
Confidence 001111222222222222222211 111111 1122211
Q ss_pred ceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcc
Q 003423 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (821)
Q Consensus 245 ~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 290 (821)
..............|..|..||||+.||+...+|.|.+|++..-+.
T Consensus 218 ~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 218 SFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred ceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 1111111123567899999999999999999999999999987544
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.37 E-value=5e-06 Score=78.69 Aligned_cols=237 Identities=15% Similarity=0.163 Sum_probs=138.7
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCe-----eeeEEEeec-----------cccEEeEEeccccC
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----LIRPFQVFH-----------GIRLHGISCNFINC 78 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~-----~~~~~~~~~-----------~~~i~~i~~~~~~~ 78 (821)
-..-||++.|. .. +.||++|. +|.|.+|.-+... ....++.|+ ..+|..|.|....
T Consensus 25 ead~ItaVefd--~t----g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t- 97 (460)
T COG5170 25 EADKITAVEFD--ET----GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT- 97 (460)
T ss_pred ccceeeEEEec--cc----cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC-
Confidence 34569999998 44 67999998 7999999876433 122233322 2467777776331
Q ss_pred CCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCC--------CC-ccc------------------cccceeee-ccC
Q 003423 79 TEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY--------QP-ETC------------------VNLSLVQS-LPR 130 (821)
Q Consensus 79 ~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~--------~~-~~~------------------~~~~~~~~-~~~ 130 (821)
.. ...+++..+++|++|.+......-... .| .+. +...+.+. -..
T Consensus 98 ---~r----~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNa 170 (460)
T COG5170 98 ---GR----NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANA 170 (460)
T ss_pred ---Cc----ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccc
Confidence 11 347777889999999987542111000 00 000 00111111 245
Q ss_pred CCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce---eEEEccCc----ceeEEEEeeccCCccCeEEEEEeeCC
Q 003423 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI---ILEVHSPE----RCLLYSMKLWGDNLEALRIASGTIYN 203 (821)
Q Consensus 131 h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~---~~~~~~~~----~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (821)
|.--|.++.|.. +...++++. |-.|.+|+++-... +..++.+. ..++.|+.|++. ..+.+.-.+..|
T Consensus 171 H~yhiNSiS~Ns---D~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~--~cn~fmYSsSkG 244 (460)
T COG5170 171 HPYHINSISFNS---DKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPE--MCNVFMYSSSKG 244 (460)
T ss_pred ceeEeeeeeecC---chheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHh--HcceEEEecCCC
Confidence 777788899987 777777664 77899998864321 23333332 235677777643 345566667789
Q ss_pred EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 003423 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (821)
Q Consensus 204 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iw 283 (821)
+|++-|++...+--.. .. ..+ ....+....-+.+-..+|..+.|+++|+++++-+. -+|+||
T Consensus 245 ~Ikl~DlRq~alcdn~------------~k--lfe---~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiw 306 (460)
T COG5170 245 EIKLNDLRQSALCDNS------------KK--LFE---LTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIW 306 (460)
T ss_pred cEEehhhhhhhhccCc------------hh--hhh---hccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEE
Confidence 9999999822110000 00 000 00011111122344567899999999999997655 799999
Q ss_pred ecccCcc
Q 003423 284 EVRAEYW 290 (821)
Q Consensus 284 d~~~~~~ 290 (821)
|++..+.
T Consensus 307 Dvnm~k~ 313 (460)
T COG5170 307 DVNMAKN 313 (460)
T ss_pred ecccccC
Confidence 9987543
No 295
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.36 E-value=0.00025 Score=84.70 Aligned_cols=221 Identities=8% Similarity=-0.037 Sum_probs=126.1
Q ss_pred cEEEEEEeecCCCCCEEEEEEC-CCcEEEEEccCCceeEEEccCc----------------ceeEEEEeeccCCc-cCeE
Q 003423 134 WVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHSPE----------------RCLLYSMKLWGDNL-EALR 195 (821)
Q Consensus 134 ~I~~~~~~~~~~~~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~~----------------~~~~~s~~~~~~s~-~~~~ 195 (821)
....+++.+ +++.|+++.. .+.|+++|..++.. .++.+.. -...+.+++ ++ ++.+
T Consensus 625 ~P~GIavd~---~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~---dp~~g~L 697 (1057)
T PLN02919 625 RPQGLAYNA---KKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF---EPVNEKV 697 (1057)
T ss_pred CCcEEEEeC---CCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEE---ecCCCeE
Confidence 357789988 8877766654 56799999877653 2221100 001123444 34 5666
Q ss_pred EEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCC-EEEEE
Q 003423 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSV 274 (821)
Q Consensus 196 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~-~l~s~ 274 (821)
.++.+.++.|++||..+..... +.+..... ...... . ....-....+|+++|+++ ++++-
T Consensus 698 yVad~~~~~I~v~d~~~g~v~~---------~~G~G~~~--------~~~g~~-~-~~~~~~~P~GIavspdG~~LYVAD 758 (1057)
T PLN02919 698 YIAMAGQHQIWEYNISDGVTRV---------FSGDGYER--------NLNGSS-G-TSTSFAQPSGISLSPDLKELYIAD 758 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEE---------EecCCccc--------cCCCCc-c-ccccccCccEEEEeCCCCEEEEEE
Confidence 6777788999999986221100 00000000 000000 0 001123457899999998 45666
Q ss_pred eCCCeEEEEecccCcccC---CCCceeeeceEEec--------cceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCceee
Q 003423 275 SDDRSARIWEVRAEYWKD---SDSIEEVGSSVLYG--------HNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLK 341 (821)
Q Consensus 275 s~Dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~--------h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~~~ 341 (821)
+.++.|++||+.++.... ...........+.. .-....++++. ++.+++-..++.|++||.++..+.
T Consensus 759 s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 759 SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 777999999988654200 00000000000000 01123467776 467788888999999999655554
Q ss_pred EeecccC-------------CCeEEEEEecCCCEEEEEeCCCcEEEEEcCCc
Q 003423 342 MIKEHIG-------------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (821)
Q Consensus 342 ~~~~h~~-------------~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~ 380 (821)
++.+... .....++++++|+++++-+.++.|++||+++.
T Consensus 839 tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 839 TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 4433210 13568999999998888889999999999653
No 296
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.34 E-value=8.1e-06 Score=77.28 Aligned_cols=245 Identities=14% Similarity=0.130 Sum_probs=139.3
Q ss_pred CCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc-----eeEEEccCcce-----------eEEEEeeccCCccCeE
Q 003423 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-----IILEVHSPERC-----------LLYSMKLWGDNLEALR 195 (821)
Q Consensus 132 ~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~-----~~~~~~~~~~~-----------~~~s~~~~~~s~~~~~ 195 (821)
.+.|+++.|.. .|.+|++|...|.|.++.-.... .+.++++++.. -+..+.+.... ....
T Consensus 26 ad~ItaVefd~---tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t-~r~h 101 (460)
T COG5170 26 ADKITAVEFDE---TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT-GRNH 101 (460)
T ss_pred cceeeEEEecc---ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC-Ccce
Confidence 47799999998 99999999888999999865432 12234433321 12223333222 3344
Q ss_pred EEEEeeCCEEEEEEcccCCcc--cCCCCCCCcccCCCCC--Ccceeeecccccc-----eeeEEE-EecCCCcEEEEEEc
Q 003423 196 IASGTIYNEIIVWKVDWEHVA--PLLNSPEGNHAHGSSS--DFKCFKLQDQQHT-----AVNLFR-LVGHEGSIFRIEWS 265 (821)
Q Consensus 196 l~sg~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~-~~~h~~~I~~l~~s 265 (821)
++..+.|.+|++|.+....+. .+..-....++.-.+. ....+.+...... ..+.+. -.+|.--|+++.|+
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 555668999999998744211 1110000001000000 0001111100000 111111 25788899999999
Q ss_pred CCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC---CEEEEEeCCCeEEEEcCCCce---
Q 003423 266 SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGSDGKQ--- 339 (821)
Q Consensus 266 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~---~~l~s~~~dg~i~iwd~~~~~--- 339 (821)
.|.+.++++ +|=.|.+|++.-... +.++--++|.....-..-|++..|++ +.+.-.+..|.|++-|+....
T Consensus 182 sD~et~lSa-DdLrINLWnl~i~D~--sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd 258 (460)
T COG5170 182 SDKETLLSA-DDLRINLWNLEIIDG--SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD 258 (460)
T ss_pred Cchheeeec-cceeeeeccccccCC--ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence 999888876 567899999875432 11111111222222334578888884 677777889999999984110
Q ss_pred --eeE------------eecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC--cCCCcc
Q 003423 340 --LKM------------IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA--FLPGSL 385 (821)
Q Consensus 340 --~~~------------~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~--~~~~~~ 385 (821)
... +.+-.. .|..+.|+++|+++++-.. -++++||.+. .++.++
T Consensus 259 n~~klfe~~~D~v~~~ff~eivs-SISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi 318 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVS-SISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred CchhhhhhccCcccchhHHHHhh-hhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee
Confidence 011 111112 5778899999999988765 5799999944 444444
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.34 E-value=8.5e-05 Score=69.27 Aligned_cols=232 Identities=15% Similarity=0.056 Sum_probs=142.0
Q ss_pred eEEEEEc-CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC
Q 003423 89 FEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (821)
Q Consensus 89 ~~l~~~g-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~ 167 (821)
.++++.| .+.+.+|...+.+ ........|...|+-+.=.- .....+..++.|.++++.+++-+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~--------------~h~~~cd~snn~v~~~~r~c--d~~~~~~i~sndht~k~~~~~~~ 148 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTND--------------GHLYQCDVSNNDVTLVKRYC--DLKFPLNIASNDHTGKTMVVSGD 148 (344)
T ss_pred cEEEeccccceeeeecccCcc--------------cceeeecccccchhhhhhhc--ccccceeeccCCcceeEEEEecC
Confidence 3566654 5999999987553 11222223333222111100 01224677889999999998766
Q ss_pred ceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccccccee
Q 003423 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (821)
Q Consensus 168 ~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (821)
..-..+..+. -...++.+ ++++.++++.+....|..|.+... ...
T Consensus 149 s~~~~~h~~~-~~~ns~~~---snd~~~~~~Vgds~~Vf~y~id~~-------------------------------sey 193 (344)
T KOG4532|consen 149 SNKFAVHNQN-LTQNSLHY---SNDPSWGSSVGDSRRVFRYAIDDE-------------------------------SEY 193 (344)
T ss_pred cccceeeccc-cceeeeEE---cCCCceEEEecCCCcceEEEeCCc-------------------------------cce
Confidence 5443333332 12455555 688999999999999999988711 111
Q ss_pred eE-EEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC----CEEE
Q 003423 248 NL-FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD----SFII 322 (821)
Q Consensus 248 ~~-~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~----~~l~ 322 (821)
.. .....-++.=++..|+.....+|++..||++.|||++..... ..... .....|.+.+..+.|+. ++|+
T Consensus 194 ~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp----m~~~s-strp~hnGa~R~c~Fsl~g~lDLLf 268 (344)
T KOG4532|consen 194 IENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP----MAEIS-STRPHHNGAFRVCRFSLYGLLDLLF 268 (344)
T ss_pred eeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc----hhhhc-ccCCCCCCceEEEEecCCCcceEEE
Confidence 11 123344556688999999999999999999999999976431 11111 35556999999999982 5565
Q ss_pred EEeCCCeEEEEcC-CCceeeEee-------cccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 323 TAGEDCTCRVWGS-DGKQLKMIK-------EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 323 s~~~dg~i~iwd~-~~~~~~~~~-------~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
-.-.-+.+.+-|+ +++-.+.+. .|....|..-.|+.++..+.+..++. +.-|++
T Consensus 269 ~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni 330 (344)
T KOG4532|consen 269 ISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNI 330 (344)
T ss_pred EecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh-hheeec
Confidence 5555678888888 444333332 23222466667776666555555442 334444
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=2.1e-06 Score=82.49 Aligned_cols=165 Identities=16% Similarity=0.200 Sum_probs=112.9
Q ss_pred EEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCC
Q 003423 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (821)
Q Consensus 151 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 230 (821)
++.+.+..|.+-|+++|..- .+. .++-+++..|. ..++++..|...|.|.+.|++..
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~--sksDVfAlQf~---~s~nLv~~GcRngeI~~iDLR~r----------------- 284 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ--SKSDVFALQFA---GSDNLVFNGCRNGEIFVIDLRCR----------------- 284 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc--cchhHHHHHhc---ccCCeeEecccCCcEEEEEeeec-----------------
Confidence 44455667888888876431 122 22335566663 35779999999999999999821
Q ss_pred CCCcceeeecccccceeeEEEEecCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccce
Q 003423 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (821)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 309 (821)
.+..+.+.+.+- |..+|+++.... ++++|.+.+.+|+|++||.+.-+. ...+ ....||..
T Consensus 285 -----------nqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-----~~~V--~qYeGHvN 345 (425)
T KOG2695|consen 285 -----------NQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-----KKSV--MQYEGHVN 345 (425)
T ss_pred -----------ccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhc-----ccce--eeeecccc
Confidence 011344455553 999999998877 778999999999999999987544 2223 57788865
Q ss_pred eEEEEEEc----CCEEEEEeCCCeEEEEcC-CCceeeEeecccC---CCeEEEEEe
Q 003423 310 RVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG---RGIWRCLYD 357 (821)
Q Consensus 310 ~i~~v~~~----~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~---~~i~~l~~~ 357 (821)
.-.-+-++ ...++++|.|...|+|.+ +|..+.++.-... ..++++++.
T Consensus 346 ~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 346 LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 44333333 478999999999999999 6887777654332 124555553
No 299
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=7e-05 Score=80.57 Aligned_cols=107 Identities=11% Similarity=0.110 Sum_probs=77.1
Q ss_pred EEEEeccCCCCCCcceEEeec-----CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcC
Q 003423 22 ALCFVHLPSHLSSLPFLLAGS-----GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (821)
Q Consensus 22 ~l~~~~~p~~~~~~~~l~~g~-----~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~ 96 (821)
-..|+ |. ..++++++ +|+|.||- ++|++-+-+. ....+.+++|+|.. -.+...|+-
T Consensus 20 i~SWH--Ps----ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe~----------~vLa~gwe~ 80 (1416)
T KOG3617|consen 20 ISSWH--PS----EPLFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPEE----------FVLAQGWEM 80 (1416)
T ss_pred ccccC--CC----CceeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccChHH----------HHHhhcccc
Confidence 34466 65 56666643 58999997 6788654443 23346678899763 123445677
Q ss_pred CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEcc
Q 003423 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (821)
Q Consensus 97 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~ 165 (821)
+.+.+|+..... .......|+.+|..+.||| +|+.|+|+..-|.|.+|...
T Consensus 81 g~~~v~~~~~~e---------------~htv~~th~a~i~~l~wS~---~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 81 GVSDVQKTNTTE---------------THTVVETHPAPIQGLDWSH---DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ceeEEEecCCce---------------eeeeccCCCCCceeEEecC---CCCeEEEcCCCceeEEEEee
Confidence 999999976432 2334457999999999999 99999999999999999876
No 300
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=0.00021 Score=77.62 Aligned_cols=231 Identities=11% Similarity=0.063 Sum_probs=121.3
Q ss_pred eEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEE-EcCC--eEEEEEEeecCCCCCCCCCccccc
Q 003423 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEK--RVKLFELNFELSPNSQYQPETCVN 121 (821)
Q Consensus 45 ~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~-~g~~--~v~i~~~~~~~~~~~~~~~~~~~~ 121 (821)
.|.++|...... +.+.. ....+....|+|++ + .++.+ ..++ .|.+||+..+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~-~~~~~~~p~wSPDG-------~---~La~~s~~~g~~~L~~~dl~tg~------------- 253 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLR-SPEPLMSPAWSPDG-------R---KLAYVSFENRKAEIFVQDIYTQV------------- 253 (448)
T ss_pred EEEEEeCCCCCc-eEeec-CCCcccCceECCCC-------C---EEEEEEecCCCcEEEEEECCCCC-------------
Confidence 677778655433 33332 23367778888653 2 23333 3333 56666665432
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEE-EECCCc--EEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEE
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDNS--IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS 198 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t-~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~s 198 (821)
.+.+..+++ .....+|+| +|+.|+. ...++. |.++|+.+++.. .+..+. .......+ ++|+..|+.
T Consensus 254 ~~~lt~~~g---~~~~~~wSP---DG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~-~~~~~p~w---SpDG~~I~f 322 (448)
T PRK04792 254 REKVTSFPG---INGAPRFSP---DGKKLALVLSKDGQPEIYVVDIATKALT-RITRHR-AIDTEPSW---HPDGKSLIF 322 (448)
T ss_pred eEEecCCCC---CcCCeeECC---CCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCC-CCccceEE---CCCCCEEEE
Confidence 122333333 334689999 9997765 455664 777788776543 333221 12233333 477776655
Q ss_pred Ee-eCCE--EEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEe
Q 003423 199 GT-IYNE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (821)
Q Consensus 199 g~-~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s 275 (821)
.+ .++. |.++|.. .++ ...+..+.......+|+|||++|+..+
T Consensus 323 ~s~~~g~~~Iy~~dl~---------------------------------~g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 323 TSERGGKPQIYRVNLA---------------------------------SGK-VSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCCCCceEEEEECC---------------------------------CCC-EEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 43 3454 4444544 111 111211222234578999999887665
Q ss_pred C-CCe--EEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEE-EEeCCCe--EEEEcCCCceeeEeeccc
Q 003423 276 D-DRS--ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII-TAGEDCT--CRVWGSDGKQLKMIKEHI 347 (821)
Q Consensus 276 ~-Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~h~ 347 (821)
. ++. |.++|+.++.. + .+... .......|+ +..|+ +...++. +.+++.+|+....+..+.
T Consensus 369 ~~~g~~~I~~~dl~~g~~------~-----~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~ 436 (448)
T PRK04792 369 RTNGKFNIARQDLETGAM------Q-----VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQ 436 (448)
T ss_pred ecCCceEEEEEECCCCCe------E-----EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCC
Confidence 4 344 44456665543 1 11111 111223566 34444 4444443 666677888777776655
Q ss_pred CCCeEEEEEec
Q 003423 348 GRGIWRCLYDS 358 (821)
Q Consensus 348 ~~~i~~l~~~~ 358 (821)
+ .+...+|+|
T Consensus 437 g-~~~~p~Wsp 446 (448)
T PRK04792 437 G-EVKSPAWSP 446 (448)
T ss_pred C-CcCCCccCC
Confidence 5 366677776
No 301
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.27 E-value=0.00062 Score=81.39 Aligned_cols=272 Identities=13% Similarity=0.086 Sum_probs=137.5
Q ss_pred EEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEee-c------------cccEEeEEeccccCCCCCCccc
Q 003423 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF-H------------GIRLHGISCNFINCTEGSVSTR 86 (821)
Q Consensus 21 t~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~-~------------~~~i~~i~~~~~~~~~~~~~~~ 86 (821)
..++++ ++ .+.+.++-. ++.|++||.. |+.+..+... . -...+++++.+++ +
T Consensus 571 ~gvavd--~~---~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g-------n- 636 (1057)
T PLN02919 571 GKLAID--LL---NNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK-------N- 636 (1057)
T ss_pred ceEEEE--CC---CCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCC-------C-
Confidence 356776 54 245555544 6899999975 4444333220 0 0124666666431 1
Q ss_pred eeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccC-------CCCcEEEEEEeecCCCC-CEEEEEECCCc
Q 003423 87 VTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCNGN-RSLAIGCSDNS 158 (821)
Q Consensus 87 ~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~I~~~~~~~~~~~~-~~l~t~~~d~~ 158 (821)
..+++-.+.+.|+.+|+..+.... +.. .........+ .-..-.+++|+| ++ .++++...++.
T Consensus 637 -~LYVaDt~n~~Ir~id~~~~~V~t--lag----~G~~g~~~~gg~~~~~~~ln~P~gVa~dp---~~g~LyVad~~~~~ 706 (1057)
T PLN02919 637 -LLYVADTENHALREIDFVNETVRT--LAG----NGTKGSDYQGGKKGTSQVLNSPWDVCFEP---VNEKVYIAMAGQHQ 706 (1057)
T ss_pred -EEEEEeCCCceEEEEecCCCEEEE--Eec----cCcccCCCCCChhhhHhhcCCCeEEEEec---CCCeEEEEECCCCe
Confidence 122333345788888875321000 000 0000000000 012235789998 54 45566667889
Q ss_pred EEEEEccCCceeEEEccC---------c-----ceeEEEEeeccCCccCe-EEEEEeeCCEEEEEEcccCCcccCCCCCC
Q 003423 159 IRVWDISNSSIILEVHSP---------E-----RCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (821)
Q Consensus 159 i~iwd~~~~~~~~~~~~~---------~-----~~~~~s~~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 223 (821)
|++||..++.... +.+. . -.....+++ ++++. +.++-+.++.|++||+.+........+..
T Consensus 707 I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIav---spdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~ 782 (1057)
T PLN02919 707 IWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISL---SPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP 782 (1057)
T ss_pred EEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEE---eCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence 9999988765431 1110 0 001122333 46665 55566667999999987322100000000
Q ss_pred CcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeec--
Q 003423 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS-- 301 (821)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-- 301 (821)
... . ....+.+...... ...-....+++++++|+.+++-+.++.|++||..++.. ....+.
T Consensus 783 ~~~---~----~l~~fG~~dG~g~-----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v-----~tiaG~G~ 845 (1057)
T PLN02919 783 TFS---D----NLFKFGDHDGVGS-----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV-----TTLAGTGK 845 (1057)
T ss_pred ccC---c----ccccccCCCCchh-----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeE-----EEEeccCC
Confidence 000 0 0000000000000 00112235899999999999999999999999987654 110000
Q ss_pred ------eEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCC
Q 003423 302 ------SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDG 337 (821)
Q Consensus 302 ------~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~ 337 (821)
....+.-.....++++ ++.+++-+.++.|++||++.
T Consensus 846 ~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 846 AGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred cCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 0011122245677886 56778888899999999943
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=3.9e-06 Score=80.74 Aligned_cols=167 Identities=14% Similarity=0.171 Sum_probs=109.8
Q ss_pred EEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC---
Q 003423 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--- 167 (821)
Q Consensus 91 l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~--- 167 (821)
++++.+..+-+-+++++- ...+. .+..|.++.|.. .++++..|+.+|.|...|++.+
T Consensus 228 fs~G~sqqv~L~nvetg~----------------~qsf~-sksDVfAlQf~~---s~nLv~~GcRngeI~~iDLR~rnqG 287 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH----------------QQSFQ-SKSDVFALQFAG---SDNLVFNGCRNGEIFVIDLRCRNQG 287 (425)
T ss_pred ecccccceeEEEEeeccc----------------ccccc-cchhHHHHHhcc---cCCeeEecccCCcEEEEEeeecccC
Confidence 445556777777777542 12233 456799999997 8899999999999999999865
Q ss_pred --ceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccc
Q 003423 168 --SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (821)
Q Consensus 168 --~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (821)
.+...+-. .+.+.++.... -++.+|.+.+.+|+|.+||++- ...
T Consensus 288 ~~~~a~rlyh--~Ssvtslq~Lq--~s~q~LmaS~M~gkikLyD~R~------------------------------~K~ 333 (425)
T KOG2695|consen 288 NGWCAQRLYH--DSSVTSLQILQ--FSQQKLMASDMTGKIKLYDLRA------------------------------TKC 333 (425)
T ss_pred CCcceEEEEc--Ccchhhhhhhc--cccceEeeccCcCceeEeeehh------------------------------hhc
Confidence 22222221 12244444322 1567888888999999999981 012
Q ss_pred eeeEEEEecCCCcEEEEE--EcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc
Q 003423 246 AVNLFRLVGHEGSIFRIE--WSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317 (821)
Q Consensus 246 ~~~~~~~~~h~~~I~~l~--~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~ 317 (821)
+.-+....||...-.-+- ..++...++++++|...|||.++.+.. ...++. ........+++++|.
T Consensus 334 ~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL-----l~tipf-~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 334 KKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL-----LCTIPF-PYSASEVDIPSVAFD 401 (425)
T ss_pred ccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce-----eeccCC-CCccccccccceehh
Confidence 234777888865544333 345667899999999999999998876 332221 223334456777775
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.10 E-value=0.0043 Score=61.48 Aligned_cols=215 Identities=11% Similarity=0.065 Sum_probs=124.8
Q ss_pred CCeEEEEECCCCeeeeEEEeecc-ccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccc
Q 003423 43 GSQVLLYDLEAGTLIRPFQVFHG-IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121 (821)
Q Consensus 43 ~~~i~iwd~~t~~~~~~~~~~~~-~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~ 121 (821)
++.|..||..+|+.+-+...... ........... ..+++..+++.+..||..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~l~~~d~~tG~------------- 57 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDG-----------GRVYVASGDGNLYALDAKTGK------------- 57 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEET-----------TEEEEEETTSEEEEEETTTSE-------------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeC-----------CEEEEEcCCCEEEEEECCCCC-------------
Confidence 57899999999999988875221 11111111111 245556688999999986542
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEE-ccC--cce--eEEEEeeccCCccCeEE
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV-HSP--ERC--LLYSMKLWGDNLEALRI 196 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~--~~~--~~~s~~~~~~s~~~~~l 196 (821)
.+..... .+.+.... .. .+..+++++.++.+..+|..+|+.+.+. ... ... ...+.. ..+..+
T Consensus 58 --~~W~~~~-~~~~~~~~-~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-----~~~~~~ 125 (238)
T PF13360_consen 58 --VLWRFDL-PGPISGAP-VV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA-----VDGDRL 125 (238)
T ss_dssp --EEEEEEC-SSCGGSGE-EE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE-----EETTEE
T ss_pred --EEEEeec-ccccccee-ee---cccccccccceeeeEecccCCcceeeeeccccccccccccccCce-----EecCEE
Confidence 2222221 11111111 12 4556677778899999999999998774 322 111 111111 236677
Q ss_pred EEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCc----------EEEEEEcC
Q 003423 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS----------IFRIEWSS 266 (821)
Q Consensus 197 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------I~~l~~s~ 266 (821)
+.+..++.|..+|.. +++.+.....+... +.+-....
T Consensus 126 ~~~~~~g~l~~~d~~---------------------------------tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (238)
T PF13360_consen 126 YVGTSSGKLVALDPK---------------------------------TGKLLWKYPVGEPRGSSPISSFSDINGSPVIS 172 (238)
T ss_dssp EEEETCSEEEEEETT---------------------------------TTEEEEEEESSTT-SS--EEEETTEEEEEECC
T ss_pred EEEeccCcEEEEecC---------------------------------CCcEEEEeecCCCCCCcceeeecccccceEEE
Confidence 888889999999988 44444444433211 22222333
Q ss_pred CCCEEEEEeCCCe-EEEEecccCcccCCCCceeeeceEEeccceeEEE-EEEcCCEEEEEeCCCeEEEEcC-CCcee
Q 003423 267 CGSKLVSVSDDRS-ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD-CCLTDSFIITAGEDCTCRVWGS-DGKQL 340 (821)
Q Consensus 267 ~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-v~~~~~~l~s~~~dg~i~iwd~-~~~~~ 340 (821)
++ .+..++.++. +.+ |+.+++. . . ......+.. ....+..++.++.++.+..||+ +|+.+
T Consensus 173 ~~-~v~~~~~~g~~~~~-d~~tg~~-----~------w-~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 173 DG-RVYVSSGDGRVVAV-DLATGEK-----L------W-SKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp TT-EEEEECCTSSEEEE-ETTTTEE-----E------E-EECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred CC-EEEEEcCCCeEEEE-ECCCCCE-----E------E-EecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 44 6666777775 555 9888764 1 1 111222333 4445788888889999999999 66654
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=1.8e-06 Score=92.66 Aligned_cols=193 Identities=13% Similarity=0.161 Sum_probs=129.9
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
+...-||++|+ -+ .+.|+.|. .|.|++|++.+|.....+..|.. .|+-+..+.++ +.+++.+
T Consensus 1100 ~~~~fTc~afs--~~----~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S-avT~vePs~dg----------s~~Ltss 1162 (1516)
T KOG1832|consen 1100 ETALFTCIAFS--GG----TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS-AVTLVEPSVDG----------STQLTSS 1162 (1516)
T ss_pred cccceeeEEee--cC----CceEEeeeccceEEEEEccCcccccccccccc-ccccccccCCc----------ceeeeec
Confidence 35678999999 54 67888888 79999999999999988887665 68888877553 2344443
Q ss_pred c--CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEE
Q 003423 95 G--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (821)
Q Consensus 95 g--~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~ 172 (821)
. .--..+|++... +...+.+.+ -.++.|+. .-..-+.|+.-....+||++++..+.+
T Consensus 1163 s~S~PlsaLW~~~s~--------------~~~~Hsf~e----d~~vkFsn---~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASST--------------GGPRHSFDE----DKAVKFSN---SLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred cccCchHHHhccccc--------------cCccccccc----cceeehhh---hHHHHHhcccccceEEEecccCcHHHH
Confidence 3 345788998743 233444433 35688876 433344455556789999999988777
Q ss_pred EccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE
Q 003423 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (821)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (821)
+-.+.-..-|+-.+..++|+..+|+--+ .+||++ ..+.++.|
T Consensus 1222 ylt~~~~~~y~~n~a~FsP~D~LIlndG-----vLWDvR---------------------------------~~~aIh~F 1263 (1516)
T KOG1832|consen 1222 YLTDTVTSSYSNNLAHFSPCDTLILNDG-----VLWDVR---------------------------------IPEAIHRF 1263 (1516)
T ss_pred hcCcchhhhhhccccccCCCcceEeeCc-----eeeeec---------------------------------cHHHHhhh
Confidence 4433333334444444578888877443 689998 44555555
Q ss_pred ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcc
Q 003423 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (821)
Q Consensus 253 ~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 290 (821)
...+..+. -.|+|.|..++.-+. |||+++.+.
T Consensus 1264 D~ft~~~~-G~FHP~g~eVIINSE-----IwD~RTF~l 1295 (1516)
T KOG1832|consen 1264 DQFTDYGG-GGFHPSGNEVIINSE-----IWDMRTFKL 1295 (1516)
T ss_pred hhheeccc-ccccCCCceEEeech-----hhhhHHHHH
Confidence 54443333 348999988887654 899998654
No 305
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.08 E-value=0.0011 Score=71.24 Aligned_cols=263 Identities=9% Similarity=0.026 Sum_probs=143.9
Q ss_pred ceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCC
Q 003423 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQ 115 (821)
Q Consensus 36 ~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~ 115 (821)
.+++.+.++.|..+|.++|+++-+.+... .+.+ +|.- .+ ..+++..+++.+.-+|..+++
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~~s---sP~v----~~----~~v~v~~~~g~l~ald~~tG~------- 181 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAG--EALS---RPVV----SD----GLVLVHTSNGMLQALNESDGA------- 181 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCC--ceec---CCEE----EC----CEEEEECCCCEEEEEEccCCC-------
Confidence 44555568999999999999988776422 1211 1110 11 245566677888888877553
Q ss_pred CccccccceeeeccCCCCcEE-EEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEcc--Ccce-e---EEEEeecc
Q 003423 116 PETCVNLSLVQSLPRLSHWVF-DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS--PERC-L---LYSMKLWG 188 (821)
Q Consensus 116 ~~~~~~~~~~~~~~~h~~~I~-~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~~~~-~---~~s~~~~~ 188 (821)
.+.........+. ...-+|.- .+..++.++.++.+...|..+|+.+-+... +... . +..+...+
T Consensus 182 --------~~W~~~~~~~~~~~~~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP 252 (394)
T PRK11138 182 --------VKWTVNLDVPSLTLRGESAPAT-AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTP 252 (394)
T ss_pred --------EeeeecCCCCcccccCCCCCEE-ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCc
Confidence 2222211100000 00011200 123466677789999999998887654321 1100 0 00000000
Q ss_pred CCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCC
Q 003423 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (821)
Q Consensus 189 ~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 268 (821)
-..+..++.++.+|.+...|.. +++.+.... .+....+.. .+
T Consensus 253 -~v~~~~vy~~~~~g~l~ald~~---------------------------------tG~~~W~~~--~~~~~~~~~--~~ 294 (394)
T PRK11138 253 -VVVGGVVYALAYNGNLVALDLR---------------------------------SGQIVWKRE--YGSVNDFAV--DG 294 (394)
T ss_pred -EEECCEEEEEEcCCeEEEEECC---------------------------------CCCEEEeec--CCCccCcEE--EC
Confidence 0123456667778999988887 222222211 111111222 45
Q ss_pred CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC-CCceeeEeeccc
Q 003423 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (821)
Q Consensus 269 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~ 347 (821)
..++.++.|+.+..+|..+++. .-.. ....+ ....+....+.+++.++.||.+.+.|. +|+.+.+.+...
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~-----~W~~---~~~~~-~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~ 365 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVE-----LWSQ---SDLLH-RLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDS 365 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcE-----EEcc---cccCC-CcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence 6777788899999999988754 1000 00001 112223344788999999999999998 888877765443
Q ss_pred CCCeEE-EEEecCCCEEEEEeCCCcEEEEEc
Q 003423 348 GRGIWR-CLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 348 ~~~i~~-l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
. .+.+ ..+ .+..|+.++.||.|..++.
T Consensus 366 ~-~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 366 S-GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred C-cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 3 2332 222 2457888999999887764
No 306
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.08 E-value=0.00099 Score=66.10 Aligned_cols=210 Identities=13% Similarity=0.083 Sum_probs=121.8
Q ss_pred CCCCcceeeccceeee------eeEEE---EEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEe
Q 003423 3 KKDLSEWRLDVGQYLG------EISAL---CFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (821)
Q Consensus 3 ~~~i~~w~~~~~~~~~------~Vt~l---~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~ 73 (821)
+++|..||+.+++-.= ++... .+ ++ ++.++++..++.|..||..+|+.+.++..... +.....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~---~~---~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~~~ 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV---PD---GGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGAPV 73 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE---EE---TTEEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSGEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE---Ee---CCEEEEEcCCCEEEEEECCCCCEEEEeecccc--ccceee
Confidence 5678888888877211 12222 22 22 23444445789999999999999988886322 222111
Q ss_pred ccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeec-cCCC---CcEEEEEEeecCCCCCE
Q 003423 74 NFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL-PRLS---HWVFDVCFLKVCNGNRS 149 (821)
Q Consensus 74 ~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~---~~I~~~~~~~~~~~~~~ 149 (821)
. .+ ..+++...++.+..+|...+. ..... .... .......... .++.
T Consensus 74 ~-------~~----~~v~v~~~~~~l~~~d~~tG~---------------~~W~~~~~~~~~~~~~~~~~~~~---~~~~ 124 (238)
T PF13360_consen 74 V-------DG----GRVYVGTSDGSLYALDAKTGK---------------VLWSIYLTSSPPAGVRSSSSPAV---DGDR 124 (238)
T ss_dssp E-------ET----TEEEEEETTSEEEEEETTTSC---------------EEEEEEE-SSCTCSTB--SEEEE---ETTE
T ss_pred e-------cc----cccccccceeeeEecccCCcc---------------eeeeeccccccccccccccCceE---ecCE
Confidence 1 11 246666678888888865442 22221 1110 1122233333 5678
Q ss_pred EEEEECCCcEEEEEccCCceeEEEccCccee----------EEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCC
Q 003423 150 LAIGCSDNSIRVWDISNSSIILEVHSPERCL----------LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLL 219 (821)
Q Consensus 150 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~----------~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 219 (821)
++++..++.|..+|..+|+.+.+........ ...+.+ .++ .+..++.++.+.-+|..
T Consensus 125 ~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~v~~~~~~g~~~~~d~~-------- 191 (238)
T PF13360_consen 125 LYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI----SDG-RVYVSSGDGRVVAVDLA-------- 191 (238)
T ss_dssp EEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC----CTT-EEEEECCTSSEEEEETT--------
T ss_pred EEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE----ECC-EEEEEcCCCeEEEEECC--------
Confidence 8888889999999999999987765433110 112221 234 66666667753333877
Q ss_pred CCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcc
Q 003423 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (821)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 290 (821)
+++.+.... ...+..+ ...++..|+.++.|+.|..||+.+++.
T Consensus 192 -------------------------tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 192 -------------------------TGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp -------------------------TTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred -------------------------CCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 333333222 2223332 345677888888999999999999864
No 307
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.0012 Score=70.52 Aligned_cols=162 Identities=14% Similarity=0.175 Sum_probs=103.3
Q ss_pred CcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEccc
Q 003423 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~ 212 (821)
..|.--++.. .+++++.|+.-|.+.+|+-..++....-......+.....+ +++..++|+|+..|.|.++-++.
T Consensus 34 ~~v~lTc~ds---t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~v---s~~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 34 ARVKLTCVDA---TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSV---SSVEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred ceEEEEEeec---CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEe---cchhHhhhhhcCCceEEeehhhc
Confidence 3344444455 88999999999999999977765533222122223333333 56788999999999999998872
Q ss_pred CCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE-ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCccc
Q 003423 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (821)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~ 291 (821)
+..+ ....+... +.|...|++++|++++..+.+|..-|.|..-.+.....
T Consensus 108 -~~p~---------------------------~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~- 158 (726)
T KOG3621|consen 108 -ELPR---------------------------DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQA- 158 (726)
T ss_pred -cCCC---------------------------cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhh-
Confidence 1111 11111111 23889999999999999999999999999988877211
Q ss_pred CCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC
Q 003423 292 DSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS 335 (821)
Q Consensus 292 ~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~ 335 (821)
.. .....+..-.+.|-.+.+...+|+.+..-. ..+.+.
T Consensus 159 ----~~-~~~q~il~~ds~IVQlD~~q~~LLVStl~r-~~Lc~t 196 (726)
T KOG3621|consen 159 ----FL-SKSQEILSEDSEIVQLDYLQSYLLVSTLTR-CILCQT 196 (726)
T ss_pred ----hc-cccceeeccCcceEEeecccceehHhhhhh-hheeec
Confidence 00 000345555677888887765555444332 234444
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.96 E-value=0.025 Score=56.22 Aligned_cols=184 Identities=13% Similarity=0.057 Sum_probs=107.6
Q ss_pred EEEEEEe-ecCCCCCEEEEEECCCcEEEEEccCCceeEEEcc---C-cceeEEEEeeccCCccCeEEEEEeeC-------
Q 003423 135 VFDVCFL-KVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS---P-ERCLLYSMKLWGDNLEALRIASGTIY------- 202 (821)
Q Consensus 135 I~~~~~~-~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~---~-~~~~~~s~~~~~~s~~~~~l~sg~~d------- 202 (821)
...+++. + ++. |+.+.. +.+.++|..+++...-... . .......+.+ ++++.+.++....
T Consensus 42 ~~G~~~~~~---~g~-l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~v---d~~G~ly~t~~~~~~~~~~~ 113 (246)
T PF08450_consen 42 PNGMAFDRP---DGR-LYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAV---DPDGNLYVTDSGGGGASGID 113 (246)
T ss_dssp EEEEEEECT---TSE-EEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE----TTS-EEEEEECCBCTTCGG
T ss_pred CceEEEEcc---CCE-EEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEE---cCCCCEEEEecCCCcccccc
Confidence 6778887 4 554 555554 4556669888865433322 1 2233444444 4677755554332
Q ss_pred -CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEE-EEeCCCeE
Q 003423 203 -NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV-SVSDDRSA 280 (821)
Q Consensus 203 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~-s~s~Dg~i 280 (821)
|.|..++.. .+ ...+...-...++|+|+|+++.|+ +-+..+.|
T Consensus 114 ~g~v~~~~~~--------------------------------~~---~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i 158 (246)
T PF08450_consen 114 PGSVYRIDPD--------------------------------GK---VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRI 158 (246)
T ss_dssp SEEEEEEETT--------------------------------SE---EEEEEEEESSEEEEEEETTSSEEEEEETTTTEE
T ss_pred ccceEEECCC--------------------------------Ce---EEEEecCcccccceEECCcchheeeccccccee
Confidence 334444443 01 122222345678999999998764 66777888
Q ss_pred EEEecccCcccCCCCceeeec-eEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEe
Q 003423 281 RIWEVRAEYWKDSDSIEEVGS-SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD 357 (821)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~-~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~ 357 (821)
..+++...... +..... ..+..-.+..-.+++. ++..++....+.|.+++.+|+.+..+..... .+++++|.
T Consensus 159 ~~~~~~~~~~~----~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~-~~t~~~fg 233 (246)
T PF08450_consen 159 WRFDLDADGGE----LSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVP-RPTNCAFG 233 (246)
T ss_dssp EEEEEETTTCC----EEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSS-SEEEEEEE
T ss_pred EEEeccccccc----eeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCC-CEEEEEEE
Confidence 88888643210 111100 1122222346778887 5666666678999999999999998887745 69999994
Q ss_pred -cCCCEEEEE
Q 003423 358 -SLSSLLVTA 366 (821)
Q Consensus 358 -~~~~~l~tg 366 (821)
++.+.|+..
T Consensus 234 g~~~~~L~vT 243 (246)
T PF08450_consen 234 GPDGKTLYVT 243 (246)
T ss_dssp STTSSEEEEE
T ss_pred CCCCCEEEEE
Confidence 565555443
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.93 E-value=0.0059 Score=60.30 Aligned_cols=199 Identities=13% Similarity=0.091 Sum_probs=117.8
Q ss_pred EEEEEEeecCCCCCEEEEEECCCc-EEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee-----CCEEEEE
Q 003423 135 VFDVCFLKVCNGNRSLAIGCSDNS-IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-----YNEIIVW 208 (821)
Q Consensus 135 I~~~~~~~~~~~~~~l~t~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~-----dg~i~vw 208 (821)
-.+++.+| .....++.+-.-|+ ..+||..+++....+..+...-.|--.. +++|+.+|++.-. .|.|-||
T Consensus 7 gH~~a~~p--~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~--fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 7 GHGVAAHP--TRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGV--FSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred ccceeeCC--CCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEE--EcCCCCEEEEeccccCCCcEEEEEE
Confidence 34577777 24455666666665 6789999999988887665543333211 1589999988644 4889999
Q ss_pred EcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeC------------
Q 003423 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD------------ 276 (821)
Q Consensus 209 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~------------ 276 (821)
|.. ...+.+.++..|--.-..+.+.|||+.|+.+-.
T Consensus 83 d~~--------------------------------~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~k 130 (305)
T PF07433_consen 83 DAA--------------------------------RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAK 130 (305)
T ss_pred ECc--------------------------------CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCcee
Confidence 987 245667777777766677889999987776531
Q ss_pred ------CCeEEEEecccCcccCCCCceeeeceEE--eccceeEEEEEEcC-CEEEEEeC-CC-------eEEEEcCCCce
Q 003423 277 ------DRSARIWEVRAEYWKDSDSIEEVGSSVL--YGHNARVWDCCLTD-SFIITAGE-DC-------TCRVWGSDGKQ 339 (821)
Q Consensus 277 ------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~h~~~i~~v~~~~-~~l~s~~~-dg-------~i~iwd~~~~~ 339 (821)
+-++..-|..+++. ++. ..+ .-|...|..+++.+ ..++.+.. .| -+-+++. ++.
T Consensus 131 LNl~tM~psL~~ld~~sG~l-----l~q---~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~ 201 (305)
T PF07433_consen 131 LNLDTMQPSLVYLDARSGAL-----LEQ---VELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-GGA 201 (305)
T ss_pred cChhhcCCceEEEecCCCce-----eee---eecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-CCc
Confidence 12333334444433 211 123 33556677776662 22222221 11 1222222 111
Q ss_pred eeEee-------cccCCCeEEEEEecCCCEEEEEe-CCCcEEEEEcCC
Q 003423 340 LKMIK-------EHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQA 379 (821)
Q Consensus 340 ~~~~~-------~h~~~~i~~l~~~~~~~~l~tg~-~dg~I~iwd~~~ 379 (821)
+..+. ...+ .+-+|++++++..+++.+ .-+.+.+||..+
T Consensus 202 ~~~~~~p~~~~~~l~~-Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 202 LRLLPAPEEQWRRLNG-YIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred ceeccCChHHHHhhCC-ceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 22111 1223 488999999998775544 677899998854
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.91 E-value=0.015 Score=57.78 Aligned_cols=191 Identities=14% Similarity=0.013 Sum_probs=111.3
Q ss_pred EEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcc
Q 003423 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (821)
Q Consensus 137 ~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~ 216 (821)
+.+|.+ .++.++++-...+.|..|+..++.... +..+. ..++.+. .+++.+++ +.. +.+.++|..+.
T Consensus 4 gp~~d~--~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~---~~G~~~~--~~~g~l~v-~~~-~~~~~~d~~~g--- 70 (246)
T PF08450_consen 4 GPVWDP--RDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG---PNGMAFD--RPDGRLYV-ADS-GGIAVVDPDTG--- 70 (246)
T ss_dssp EEEEET--TTTEEEEEETTTTEEEEEETTTTEEEE-EESSS---EEEEEEE--CTTSEEEE-EET-TCEEEEETTTT---
T ss_pred ceEEEC--CCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC---CceEEEE--ccCCEEEE-EEc-CceEEEecCCC---
Confidence 456665 155566666678899999988876533 22222 3334442 13444444 444 44455587611
Q ss_pred cCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe--c-CCCcEEEEEEcCCCCEEEEEeCC--------CeEEEEec
Q 003423 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--G-HEGSIFRIEWSSCGSKLVSVSDD--------RSARIWEV 285 (821)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-h~~~I~~l~~s~~~~~l~s~s~D--------g~i~iwd~ 285 (821)
+.+.+.... . .....+.+++.|+|++.++.... |.|..++.
T Consensus 71 ----------------------------~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~ 122 (246)
T PF08450_consen 71 ----------------------------KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP 122 (246)
T ss_dssp ----------------------------EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET
T ss_pred ----------------------------cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC
Confidence 223344332 2 34568899999999988876654 34555555
Q ss_pred ccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEE-EEEeCCCeEEEEcCC--Ccee---eEeecccCC--CeEEEE
Q 003423 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI-ITAGEDCTCRVWGSD--GKQL---KMIKEHIGR--GIWRCL 355 (821)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l-~s~~~dg~i~iwd~~--~~~~---~~~~~h~~~--~i~~l~ 355 (821)
. ++. ......-...+.++|+ ++.| ++-+..+.|..++++ +..+ ..+...... ..-.++
T Consensus 123 ~-~~~-----------~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~ 190 (246)
T PF08450_consen 123 D-GKV-----------TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLA 190 (246)
T ss_dssp T-SEE-----------EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEE
T ss_pred C-CeE-----------EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcce
Confidence 5 222 1233334456789998 3445 466778888888882 3311 222211111 267899
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCc
Q 003423 356 YDSLSSLLVTAGFDSAIKVHQFQAF 380 (821)
Q Consensus 356 ~~~~~~~l~tg~~dg~I~iwd~~~~ 380 (821)
++.+|++.++....+.|.+++.++.
T Consensus 191 vD~~G~l~va~~~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 191 VDSDGNLWVADWGGGRIVVFDPDGK 215 (246)
T ss_dssp EBTTS-EEEEEETTTEEEEEETTSC
T ss_pred EcCCCCEEEEEcCCCEEEEECCCcc
Confidence 9999998888888899999998654
No 311
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.89 E-value=0.013 Score=60.95 Aligned_cols=185 Identities=12% Similarity=0.117 Sum_probs=119.1
Q ss_pred CcEEEEEccCCceeEEEccCcceeEEEEeeccCCc----cCeEEEEEee----------CCEEEEEEcccCCcccCCCCC
Q 003423 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL----EALRIASGTI----------YNEIIVWKVDWEHVAPLLNSP 222 (821)
Q Consensus 157 ~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~----~~~~l~sg~~----------dg~i~vwd~~~~~~~~~~~~~ 222 (821)
..|++.|..+.+.+.++.-+....+.++..+.... ...+++.|+. .|.|.++++... +.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~---~~---- 74 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISES---PE---- 74 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcc---cc----
Confidence 36889998888887777666666666766655443 2678888875 288999998821 00
Q ss_pred CCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeece
Q 003423 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (821)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 302 (821)
.....+.+... ...++|++++-- ++. |+.+. .+.|.+|++...+. ... .
T Consensus 75 -------------------~~~~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~-----l~~---~ 123 (321)
T PF03178_consen 75 -------------------NNFKLKLIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKT-----LLK---K 123 (321)
T ss_dssp ----------------------EEEEEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSS-----EEE---E
T ss_pred -------------------cceEEEEEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCccc-----chh---h
Confidence 00123334333 357899999876 344 44443 38999999998761 111 2
Q ss_pred EEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC--CCceeeEee-cccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 303 VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS--DGKQLKMIK-EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 303 ~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~-~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
........+.++...+++++.|.....+.++.. +++.+..+. ......++++.+-++++.++.+..+|.+.++....
T Consensus 124 ~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 124 AFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred heecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 333334477888888899999999888888755 444344333 23333578888886667999999999999999853
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.89 E-value=0.0083 Score=59.29 Aligned_cols=208 Identities=13% Similarity=0.155 Sum_probs=116.8
Q ss_pred eEEEEEeccCCCCCCcceEEeec--CCeEEEEECCCCeeeeEEEeeccccEEe-EEeccccCCCCCCccceeeEEEEE--
Q 003423 20 ISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHG-ISCNFINCTEGSVSTRVTFEVALF-- 94 (821)
Q Consensus 20 Vt~l~~~~~p~~~~~~~~l~~g~--~~~i~iwd~~t~~~~~~~~~~~~~~i~~-i~~~~~~~~~~~~~~~~~~~l~~~-- 94 (821)
-.+++.+ |. ....++.+- +.+..+||..+|+.+..+....+-.-.+ -.|++++ + .++++-
T Consensus 7 gH~~a~~--p~---~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG-------~---~LytTEnd 71 (305)
T PF07433_consen 7 GHGVAAH--PT---RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG-------R---LLYTTEND 71 (305)
T ss_pred ccceeeC--CC---CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC-------C---EEEEeccc
Confidence 3466777 75 345555565 6799999999999998887544321111 2456443 2 444443
Q ss_pred ---cCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC----------------
Q 003423 95 ---GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---------------- 155 (821)
Q Consensus 95 ---g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~---------------- 155 (821)
+.|.|-|||.... ++.+..+..|.=.-..+.+.| +|+.|+++-.
T Consensus 72 ~~~g~G~IgVyd~~~~--------------~~ri~E~~s~GIGPHel~l~p---DG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 72 YETGRGVIGVYDAARG--------------YRRIGEFPSHGIGPHELLLMP---DGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred cCCCcEEEEEEECcCC--------------cEEEeEecCCCcChhhEEEcC---CCCEEEEEcCCCccCcccCceecChh
Confidence 3589999998832 567777877776667788899 9988887621
Q ss_pred --CCcEEEEEccCCceeEEEccCc---ceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCC
Q 003423 156 --DNSIRVWDISNSSIILEVHSPE---RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (821)
Q Consensus 156 --d~~i~iwd~~~~~~~~~~~~~~---~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 230 (821)
+-.+..-|..+|+.+.+..-+. +-.+-.++. ..++..++..- |.-... +..+
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~---~~~G~V~~a~Q-------~qg~~~------~~~P------- 191 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAV---DGDGTVAFAMQ-------YQGDPG------DAPP------- 191 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEe---cCCCcEEEEEe-------cCCCCC------ccCC-------
Confidence 2344455666666655533221 111222222 23333222221 111100 0000
Q ss_pred CCCcceeeecccccceeeEEEE-------ecCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEecccCcc
Q 003423 231 SSDFKCFKLQDQQHTAVNLFRL-------VGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAEYW 290 (821)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~I~~l~~s~~~~~l-~s~s~Dg~i~iwd~~~~~~ 290 (821)
.+.+.. ....+..+ ..-.+-|-+|++++++..+ +|+=.-+.+.+||..++..
T Consensus 192 -----Lva~~~---~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 192 -----LVALHR---RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred -----eEEEEc---CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 000000 00101111 1234678899999999876 6666778999999999865
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00025 Score=71.12 Aligned_cols=273 Identities=15% Similarity=0.090 Sum_probs=158.4
Q ss_pred EeccceeEEEEEEc-CCEEEEEeCCCeEEEEcCCC----ceeeEeecccCCCeEEEEEecCCCEEEEEeC-CCcEEEEEc
Q 003423 304 LYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDG----KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQF 377 (821)
Q Consensus 304 ~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~~~----~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~-dg~I~iwd~ 377 (821)
.+-|...|+.+... .+++++++.||.++.|.-.. +.+..+..|-+ .|.+++.+.++.++.|.+. |..++++|+
T Consensus 5 symhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~-~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 5 SYMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLG-VILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred hhcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHH-HHHhhhccccceeEeeccCcccceeEEEe
Confidence 34577778877766 68999999999999999743 34555677777 5889999999999999887 999999999
Q ss_pred CCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCCCcce-ee
Q 003423 378 QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVN-WN 456 (821)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~~~~~-~~ 456 (821)
..-..-. .+.++..++...-....++.+..++.+.- .+|.+..+ +..... -.
T Consensus 84 En~Dmin-----------------miKL~~lPg~a~wv~skGd~~s~IAVs~~-------~sg~i~Vv---D~~~d~~q~ 136 (558)
T KOG0882|consen 84 ENFDMIN-----------------MIKLVDLPGFAEWVTSKGDKISLIAVSLF-------KSGKIFVV---DGFGDFCQD 136 (558)
T ss_pred eccchhh-----------------hcccccCCCceEEecCCCCeeeeEEeecc-------cCCCcEEE---CCcCCcCcc
Confidence 5421100 01112222222222233344444544421 12233221 111100 01
Q ss_pred EeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCcccee--------eeeE
Q 003423 457 KILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQL--------LGTY 528 (821)
Q Consensus 457 ~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 528 (821)
.....-+..++.++...+.. +.+.+....|.|.-|.....- ......+.|....+..+ ...-
T Consensus 137 ~~fkklH~sPV~~i~y~qa~--------Ds~vSiD~~gmVEyWs~e~~~--qfPr~~l~~~~K~eTdLy~f~K~Kt~pts 206 (558)
T KOG0882|consen 137 GYFKKLHFSPVKKIRYNQAG--------DSAVSIDISGMVEYWSAEGPF--QFPRTNLNFELKHETDLYGFPKAKTEPTS 206 (558)
T ss_pred ceecccccCceEEEEeeccc--------cceeeccccceeEeecCCCcc--cCccccccccccccchhhcccccccCccc
Confidence 12233346677777776543 778888889999999876411 11111223333222222 2233
Q ss_pred EeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCc-------ccee-----eeeEEE-----ecccC-ceEEEEEeec
Q 003423 529 WCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSK-------TNNV-----FLVAEF-----SSCFG-ARIMCLDASF 590 (821)
Q Consensus 529 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~-----~~~~~~-----~~~h~-~~I~~l~~s~ 590 (821)
.+++|++..+.+-+.|.+|+++....+.......... .... ++...+ ...|. ..-+.+.|..
T Consensus 207 ~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde 286 (558)
T KOG0882|consen 207 FEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE 286 (558)
T ss_pred eEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC
Confidence 4677899999999999999999998874322110000 0001 111100 01122 2335677888
Q ss_pred CCCEEEEEcCCCcEEEEecCccccc
Q 003423 591 EDEVLFCGDLRGNLVLFPLLRDLLN 615 (821)
Q Consensus 591 ~~~~L~sgs~dG~i~iw~~~~~~~~ 615 (821)
.+++|+-|+--| |++.++..++..
T Consensus 287 s~~flly~t~~g-ikvin~~tn~v~ 310 (558)
T KOG0882|consen 287 SGNFLLYGTILG-IKVINLDTNTVV 310 (558)
T ss_pred CCCEEEeeccee-EEEEEeecCeEE
Confidence 899999988765 788888765443
No 314
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.82 E-value=0.014 Score=61.39 Aligned_cols=287 Identities=13% Similarity=0.142 Sum_probs=138.7
Q ss_pred eeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCe
Q 003423 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (821)
Q Consensus 19 ~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~ 98 (821)
.|+++.|. ++ ++.++++-..|.|.||.....+.-..- ...+-..+.+.+.. . .++.
T Consensus 3 ~v~~vs~a--~~---t~Elav~~~~GeVv~~k~~~n~~~~~~---~~~~~~~~~~~~~~----~------------~~~~ 58 (395)
T PF08596_consen 3 SVTHVSFA--PE---TLELAVGLESGEVVLFKFGKNQNYGNR---EQPPDLDYNFRRFS----L------------NNSP 58 (395)
T ss_dssp -EEEEEEE--TT---TTEEEEEETTS-EEEEEEEE---------------------S------G------------GGSS
T ss_pred eEEEEEec--CC---CceEEEEccCCcEEEEEcccCCCCCcc---CCCcccCccccccc----c------------cCCC
Confidence 58999999 87 567777777999999998653322100 00001111111110 0 0122
Q ss_pred EEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccC--
Q 003423 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-- 176 (821)
Q Consensus 99 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-- 176 (821)
-.|-|+.....+. ....+.+..-+....+.|++++.| +=.++|+|..+|.+.|.|++....+..-.-.
T Consensus 59 ~~l~di~~r~~~~------~~~gf~P~~l~~~~~g~vtal~~S----~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~ 128 (395)
T PF08596_consen 59 GKLTDISDRAPPS------LKEGFLPLTLLDAKQGPVTALKNS----DIGFVAIGYESGSLVVIDLRGPAVIYNENIRES 128 (395)
T ss_dssp -SEEE-GGG--TT-------SEEEEEEEEE---S-SEEEEEE-----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG-
T ss_pred cceEEehhhCCcc------cccccCchhheeccCCcEeEEecC----CCcEEEEEecCCcEEEEECCCCeEEeecccccc
Confidence 3344444221100 000144455555568999999997 5568999999999999999888877653211
Q ss_pred -----cc----eeEEEEeec-cCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccce
Q 003423 177 -----ER----CLLYSMKLW-GDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (821)
Q Consensus 177 -----~~----~~~~s~~~~-~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (821)
.. ++-|++.-. .......++++|+..|.+.+|++. |..+ +....
T Consensus 129 ~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl-----p~~~---------------------g~f~v 182 (395)
T PF08596_consen 129 FLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL-----PSSN---------------------GRFSV 182 (395)
T ss_dssp -T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE-----E-GG---------------------G-EEE
T ss_pred ccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe-----cCCC---------------------CceEE
Confidence 12 233333222 122234789999999999999886 1000 00112
Q ss_pred eeEEEEecCCCcEEEEE-EcCC-----------------C----CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEE
Q 003423 247 VNLFRLVGHEGSIFRIE-WSSC-----------------G----SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (821)
Q Consensus 247 ~~~~~~~~h~~~I~~l~-~s~~-----------------~----~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 304 (821)
+.......|.+.|..|. |+.+ + .+++.+ .+..+|++...+.+. .. ..
T Consensus 183 ~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~~~~~~k~-----~~-----K~ 251 (395)
T PF08596_consen 183 QFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVFKPPKSKG-----AH-----KS 251 (395)
T ss_dssp EEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-TT---E-----EE-----EE
T ss_pred EEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEEeCCCCcc-----cc-----ee
Confidence 22222234556666554 3211 1 144444 458899999887543 11 11
Q ss_pred eccceeEEEEEE-------cCCEEEEEeCCCeEEEEcC-CCceeeEeecccC---CCeEEEEEecCCCEEEEEeCCCcEE
Q 003423 305 YGHNARVWDCCL-------TDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG---RGIWRCLYDSLSSLLVTAGFDSAIK 373 (821)
Q Consensus 305 ~~h~~~i~~v~~-------~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~---~~i~~l~~~~~~~~l~tg~~dg~I~ 373 (821)
.........+++ .+..|++-..+|.++++.+ +-+.+..+..+.. +.+....++++|..++-.+.. .+.
T Consensus 252 ~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps-E~~ 330 (395)
T PF08596_consen 252 FDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS-EIQ 330 (395)
T ss_dssp -SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS-EEE
T ss_pred eccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcc-cEE
Confidence 122122222333 2467888889999999999 6677766665321 123456678888877666543 455
Q ss_pred EEEc
Q 003423 374 VHQF 377 (821)
Q Consensus 374 iwd~ 377 (821)
++.+
T Consensus 331 l~sv 334 (395)
T PF08596_consen 331 LFSV 334 (395)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 315
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.81 E-value=0.042 Score=58.32 Aligned_cols=86 Identities=13% Similarity=0.157 Sum_probs=64.6
Q ss_pred eeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccCCcceEEEEEEecC
Q 003423 570 FLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLR 649 (821)
Q Consensus 570 ~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~ 649 (821)
+.+..........|.|.+++|+.+.|+.|..||+|.+||..... ..+ ....-..+.++|+
T Consensus 249 qrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~---------------t~~--~ka~~~P~~iaWH--- 308 (545)
T PF11768_consen 249 QRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV---------------TLL--AKAEFIPTLIAWH--- 308 (545)
T ss_pred eEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe---------------eee--eeecccceEEEEc---
Confidence 33333334678889999999999999999999999999977431 111 1113357999999
Q ss_pred CCceEEEEecCCCeEEEEEeecCCce
Q 003423 650 SNQTEIRSTGGDGCICYLEYDKDRES 675 (821)
Q Consensus 650 ~~~~~l~t~g~Dg~i~iw~~~~~~~~ 675 (821)
+++..++.++.-|.+.+||+--+..+
T Consensus 309 p~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 309 PDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred CCCcEEEEEcCCceEEEEEeecCccc
Confidence 56788999999999999999654433
No 316
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00037 Score=69.92 Aligned_cols=240 Identities=14% Similarity=0.087 Sum_probs=155.1
Q ss_pred eEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC-CCcEEEEEccCC
Q 003423 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNS 167 (821)
Q Consensus 89 ~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~-d~~i~iwd~~~~ 167 (821)
..+.++-||.++.|.-..-. -.+.+..+..|...|.+++.+- ++.++.|.+. |..++++|+++-
T Consensus 22 fiiqASlDGh~KFWkKs~is------------GvEfVKhFraHL~~I~sl~~S~---dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 22 FIIQASLDGHKKFWKKSRIS------------GVEFVKHFRAHLGVILSLAVSY---DGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred eEEeeecchhhhhcCCCCcc------------ceeehhhhHHHHHHHHhhhccc---cceeEeeccCcccceeEEEeecc
Confidence 56667779999999855311 1356778888999999999998 9999999777 999999999875
Q ss_pred ceeE--EEccCcc--eeEEEEeeccCCcc-CeEEEE-EeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecc
Q 003423 168 SIIL--EVHSPER--CLLYSMKLWGDNLE-ALRIAS-GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (821)
Q Consensus 168 ~~~~--~~~~~~~--~~~~s~~~~~~s~~-~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (821)
..+. .+....+ +.+++ ..+ -..||. .-.++.|.|+|-...
T Consensus 87 DminmiKL~~lPg~a~wv~s------kGd~~s~IAVs~~~sg~i~VvD~~~d---------------------------- 132 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTS------KGDKISLIAVSLFKSGKIFVVDGFGD---------------------------- 132 (558)
T ss_pred chhhhcccccCCCceEEecC------CCCeeeeEEeecccCCCcEEECCcCC----------------------------
Confidence 4432 1211111 11111 111 123433 345789999997710
Q ss_pred cccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeccc-CcccCC-CC--cee-eeceEEeccceeEEEEEE
Q 003423 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA-EYWKDS-DS--IEE-VGSSVLYGHNARVWDCCL 316 (821)
Q Consensus 242 ~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~-~~--~~~-~~~~~~~~h~~~i~~v~~ 316 (821)
..+....-.-|..+|..+.+++-+...+|....|.|.-|.... -+.... .+ .+. .....+........++.|
T Consensus 133 ---~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Ef 209 (558)
T KOG0882|consen 133 ---FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEF 209 (558)
T ss_pred ---cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEE
Confidence 1133333456999999999999999999999999999999874 111000 00 000 000122223455678888
Q ss_pred c--CCEEEEEeCCCeEEEEcC-CCceeeEe--------------------------------ecccCCCeEEEEEecCCC
Q 003423 317 T--DSFIITAGEDCTCRVWGS-DGKQLKMI--------------------------------KEHIGRGIWRCLYDSLSS 361 (821)
Q Consensus 317 ~--~~~l~s~~~dg~i~iwd~-~~~~~~~~--------------------------------~~h~~~~i~~l~~~~~~~ 361 (821)
+ +..+.+-+.|..|+++.. .|+.++.+ ..|....-+.+.|+..++
T Consensus 210 sp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~ 289 (558)
T KOG0882|consen 210 SPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGN 289 (558)
T ss_pred ccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCC
Confidence 7 578889999999999988 44322211 112222245677888899
Q ss_pred EEEEEeCCCcEEEEEcCCcC
Q 003423 362 LLVTAGFDSAIKVHQFQAFL 381 (821)
Q Consensus 362 ~l~tg~~dg~I~iwd~~~~~ 381 (821)
+|+-|+-=| |++.++.+..
T Consensus 290 flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 290 FLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred EEEeeccee-EEEEEeecCe
Confidence 999988766 8899986543
No 317
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.77 E-value=0.036 Score=52.12 Aligned_cols=69 Identities=10% Similarity=0.084 Sum_probs=50.7
Q ss_pred CcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCc--ceeEEEEeeccCCccCeEEEEEeeCCEEEEEEc
Q 003423 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE--RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~ 210 (821)
+.|.+-+.- -|++++.|+..|.+.+.+..+|.....+...+ ++... + .+++.++..|+.|++.+.-|.
T Consensus 53 ~RiE~sa~v----vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~-~-----d~~~glIycgshd~~~yalD~ 122 (354)
T KOG4649|consen 53 VRIECSAIV----VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ-C-----DFDGGLIYCGSHDGNFYALDP 122 (354)
T ss_pred ceeeeeeEE----ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE-E-----cCCCceEEEecCCCcEEEecc
Confidence 345444443 46679999999999999999998776655332 22111 1 368899999999999999998
Q ss_pred c
Q 003423 211 D 211 (821)
Q Consensus 211 ~ 211 (821)
.
T Consensus 123 ~ 123 (354)
T KOG4649|consen 123 K 123 (354)
T ss_pred c
Confidence 8
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0013 Score=71.33 Aligned_cols=184 Identities=14% Similarity=0.052 Sum_probs=123.7
Q ss_pred CCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 132 ~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
.+.+.|++++ ++.++-|+-+|.|++.+..... .+...+... ..+|.++++++.||+|.|-.+.
T Consensus 39 ~D~is~~av~-----~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~----------~~~Gey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 39 NDAISCCAVH-----DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS----------ILEGEYVASCSDDGKVVIGSLF 101 (846)
T ss_pred hhHHHHHHhh-----cceeeeccccceEEEEecCCcc--ccccccccc----------ccCCceEEEecCCCcEEEeecc
Confidence 4678888875 4789999999999999865332 222222111 3579999999999999999887
Q ss_pred cCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCC-----CCEEEEEeCCCeEEEEecc
Q 003423 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-----GSKLVSVSDDRSARIWEVR 286 (821)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-----~~~l~s~s~Dg~i~iwd~~ 286 (821)
+......+. -..++.+|+++|+ .+.+++|+.-| +.++.-+
T Consensus 102 ---------------------------------~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~ 146 (846)
T KOG2066|consen 102 ---------------------------------TDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN 146 (846)
T ss_pred ---------------------------------CCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhh
Confidence 333333332 4568999999997 46899999988 7666432
Q ss_pred cCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC-CCceeeEeecccCC-----CeEEEEEecCC
Q 003423 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR-----GIWRCLYDSLS 360 (821)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~-----~i~~l~~~~~~ 360 (821)
--.. -. ...+..-.++|.++.|.+++++=+..+| ++++|. .++.+..+...... --..+.|.++
T Consensus 147 wlgn-----k~---~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~- 216 (846)
T KOG2066|consen 147 WLGN-----KD---SVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE- 216 (846)
T ss_pred hhcC-----cc---ceeeecCccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-
Confidence 2111 00 0245566789999999999999888776 899998 55555554433321 1224566654
Q ss_pred CEEEEEeCCCcEEEEEcC
Q 003423 361 SLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 361 ~~l~tg~~dg~I~iwd~~ 378 (821)
..|+.|-.| +|++..++
T Consensus 217 ~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 217 DRLVIGWGD-SVKICSIK 233 (846)
T ss_pred CeEEEecCC-eEEEEEEe
Confidence 456666555 68888885
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.70 E-value=0.0086 Score=68.27 Aligned_cols=217 Identities=14% Similarity=0.146 Sum_probs=122.4
Q ss_pred eeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCC
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~ 97 (821)
..|.++.|. -+ ...++++..+|.|.+-|.++......-.+ ...|.+++|+|+. ..+.++.+.+
T Consensus 69 ~~i~s~~fl--~d---~~~i~v~~~~G~iilvd~et~~~eivg~v--d~GI~aaswS~De----------e~l~liT~~~ 131 (1265)
T KOG1920|consen 69 DEIVSVQFL--AD---TNSICVITALGDIILVDPETLELEIVGNV--DNGISAASWSPDE----------ELLALITGRQ 131 (1265)
T ss_pred cceEEEEEe--cc---cceEEEEecCCcEEEEcccccceeeeeec--cCceEEEeecCCC----------cEEEEEeCCc
Confidence 578889988 44 34677777888888889988764332222 3369999999763 3566667777
Q ss_pred eEEEEEEeecCCCCCCCCCc-------ccc-ccceeeeccC---------------------CCCcEEEEEEeecCCCCC
Q 003423 98 RVKLFELNFELSPNSQYQPE-------TCV-NLSLVQSLPR---------------------LSHWVFDVCFLKVCNGNR 148 (821)
Q Consensus 98 ~v~i~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~---------------------h~~~I~~~~~~~~~~~~~ 148 (821)
++.+-.-...-..+.....+ .++ .++....+.| -.+.=+.+.|-- ||+
T Consensus 132 tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg---Dg~ 208 (1265)
T KOG1920|consen 132 TLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG---DGE 208 (1265)
T ss_pred EEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc---CCc
Confidence 77765432111000000000 000 1111111111 112234578877 899
Q ss_pred EEEEEE----CC-CcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEE---eeCCEEEEEEcccCCcccCCC
Q 003423 149 SLAIGC----SD-NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG---TIYNEIIVWKVDWEHVAPLLN 220 (821)
Q Consensus 149 ~l~t~~----~d-~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg---~~dg~i~vwd~~~~~~~~~~~ 220 (821)
++|+.. .+ +.|++||.+ |. +.....+....-.++.+ -|.|.++|+- +.|+.|.++.-++-
T Consensus 209 ~fAVs~~~~~~~~RkirV~drE-g~-Lns~se~~~~l~~~LsW---kPsgs~iA~iq~~~sd~~IvffErNGL------- 276 (1265)
T KOG1920|consen 209 YFAVSFVESETGTRKIRVYDRE-GA-LNSTSEPVEGLQHSLSW---KPSGSLIAAIQCKTSDSDIVFFERNGL------- 276 (1265)
T ss_pred EEEEEEEeccCCceeEEEeccc-ch-hhcccCcccccccceee---cCCCCeEeeeeecCCCCcEEEEecCCc-------
Confidence 998842 23 789999976 32 22222222211122222 2577788774 34567888876611
Q ss_pred CCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEE---EeCCCeEEEEecccCc
Q 003423 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS---VSDDRSARIWEVRAEY 289 (821)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s---~s~Dg~i~iwd~~~~~ 289 (821)
..+.....+......|..++|+.++..||. +.....|++|-+.+..
T Consensus 277 -----------------------~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 277 -----------------------RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred -----------------------cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 011111112223344899999999999887 5555669999988753
No 320
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.70 E-value=0.1 Score=55.45 Aligned_cols=123 Identities=12% Similarity=0.095 Sum_probs=83.4
Q ss_pred eeEEEEecCCCcEEEEEEcC-CCCEEEEE----eCCCeE----EEEecccCcccCCCCceeeeceEEeccceeEEEEEEc
Q 003423 247 VNLFRLVGHEGSIFRIEWSS-CGSKLVSV----SDDRSA----RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317 (821)
Q Consensus 247 ~~~~~~~~h~~~I~~l~~s~-~~~~l~s~----s~Dg~i----~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~ 317 (821)
+.+..... +....++.|+. +...+.|. +.+|.+ .+|+....+ ++.+. .+.....+.|.+++++
T Consensus 197 EvL~yirT-E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k------lqrvs-vtsipL~s~v~~ca~s 268 (545)
T PF11768_consen 197 EVLSYIRT-ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK------LQRVS-VTSIPLPSQVICCARS 268 (545)
T ss_pred EEEEEEEe-cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc------eeEEE-EEEEecCCcceEEecC
Confidence 34444332 33446778876 33445433 344443 456666543 34332 2555678889999998
Q ss_pred --CCEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 318 --DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 318 --~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
...++.|.+||+|.+||...+.....+. .- ..+.++|+|+|..+++|+..|.+.+||+.-
T Consensus 269 p~E~kLvlGC~DgSiiLyD~~~~~t~~~ka-~~-~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 269 PSEDKLVLGCEDGSIILYDTTRGVTLLAKA-EF-IPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cccceEEEEecCCeEEEEEcCCCeeeeeee-cc-cceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 4899999999999999985443333322 22 467899999999999999999999999943
No 321
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.70 E-value=0.05 Score=56.60 Aligned_cols=190 Identities=16% Similarity=0.197 Sum_probs=118.0
Q ss_pred CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCc-cceeeEEEEEc---------C-CeEEEEEEeecCCCCC
Q 003423 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVS-TRVTFEVALFG---------E-KRVKLFELNFELSPNS 112 (821)
Q Consensus 44 ~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~-~~~~~~l~~~g---------~-~~v~i~~~~~~~~~~~ 112 (821)
..|++.|..+.+.+.++.-...+.+.++....-. .++ ....++++..+ . |.+.++++....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~----~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~---- 73 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLK----GDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP---- 73 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEET----TS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEc----CccccccCEEEEEecccccccccccCcEEEEEEEEccc----
Confidence 4689999999999999988778788877654321 110 00133444433 2 889999998531
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc-eeEEEccCcceeEEEEeeccCCc
Q 003423 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHSPERCLLYSMKLWGDNL 191 (821)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~s~~~~~~s~ 191 (821)
....+++.+.... .+++|++++-. ++. |++|. .+.|.+|++...+ ....-..+....+.++..
T Consensus 74 ----~~~~~l~~i~~~~-~~g~V~ai~~~----~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~----- 137 (321)
T PF03178_consen 74 ----ENNFKLKLIHSTE-VKGPVTAICSF----NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV----- 137 (321)
T ss_dssp --------EEEEEEEEE-ESS-EEEEEEE----TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-----
T ss_pred ----ccceEEEEEEEEe-ecCcceEhhhh----CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec-----
Confidence 0111244444433 46889999865 444 55444 5899999999888 544433333334555543
Q ss_pred cCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEE
Q 003423 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (821)
Q Consensus 192 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l 271 (821)
.+.+|+.|+....+.++.+... ..+...+.. ......++++.|-++++.+
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~-----------------------------~~~l~~va~-d~~~~~v~~~~~l~d~~~~ 187 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEE-----------------------------NNKLILVAR-DYQPRWVTAAEFLVDEDTI 187 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETT-----------------------------TE-EEEEEE-ESS-BEEEEEEEE-SSSEE
T ss_pred cccEEEEEEcccCEEEEEEEcc-----------------------------CCEEEEEEe-cCCCccEEEEEEecCCcEE
Confidence 3568999999898988876610 001222222 2345668999998766799
Q ss_pred EEEeCCCeEEEEeccc
Q 003423 272 VSVSDDRSARIWEVRA 287 (821)
Q Consensus 272 ~s~s~Dg~i~iwd~~~ 287 (821)
+.+..+|.+.++....
T Consensus 188 i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 188 IVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEETTSEEEEEEE-S
T ss_pred EEEcCCCeEEEEEECC
Confidence 9999999999998874
No 322
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.68 E-value=0.0009 Score=73.27 Aligned_cols=187 Identities=13% Similarity=0.103 Sum_probs=125.2
Q ss_pred CcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCC
Q 003423 34 SLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (821)
Q Consensus 34 ~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~ 113 (821)
...++..|--..+..+|+.+.+..+...+..+ .|.=|.-.. ..++++--.|+|.+-|...
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~-~v~imR~Nn------------r~lf~G~t~G~V~LrD~~s------- 206 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS-GVTIMRYNN------------RNLFCGDTRGTVFLRDPNS------- 206 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCC-ceEEEEecC------------cEEEeecccceEEeecCCc-------
Confidence 33455555677899999999888877776443 355555431 1233333358888877763
Q ss_pred CCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC---------CCcEEEEEccCCceeEEEccCcceeEEEE
Q 003423 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---------DNSIRVWDISNSSIILEVHSPERCLLYSM 184 (821)
Q Consensus 114 ~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~s~ 184 (821)
++.++++..|++.|.++.. .|++|++|+. |.-|+|||++..+.+..+.-+..... +
T Consensus 207 --------~~~iht~~aHs~siSDfDv-----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~f--l 271 (1118)
T KOG1275|consen 207 --------FETIHTFDAHSGSISDFDV-----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQF--L 271 (1118)
T ss_pred --------Cceeeeeeccccceeeeec-----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchh--h
Confidence 6789999999999998876 6788988864 67799999998776655554443211 2
Q ss_pred eeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEE
Q 003423 185 KLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEW 264 (821)
Q Consensus 185 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 264 (821)
+|++. =...+++.+..|+..+-|..+-. .....+.........+.++.+
T Consensus 272 rf~Ps--l~t~~~V~S~sGq~q~vd~~~ls-----------------------------NP~~~~~~v~p~~s~i~~fDi 320 (1118)
T KOG1275|consen 272 RFHPS--LTTRLAVTSQSGQFQFVDTATLS-----------------------------NPPAGVKMVNPNGSGISAFDI 320 (1118)
T ss_pred hhccc--ccceEEEEecccceeeccccccC-----------------------------CCccceeEEccCCCcceeEEe
Confidence 33322 23467777778998888844100 011112222233445999999
Q ss_pred cCCCCEEEEEeCCCeEEEEecc
Q 003423 265 SSCGSKLVSVSDDRSARIWEVR 286 (821)
Q Consensus 265 s~~~~~l~s~s~Dg~i~iwd~~ 286 (821)
+++++.+|-+..+|.|.+|.-.
T Consensus 321 Ssn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 321 SSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred cCCCceEEEecccCcEeeecCC
Confidence 9999999999999999999833
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0019 Score=70.09 Aligned_cols=132 Identities=17% Similarity=0.108 Sum_probs=97.5
Q ss_pred cCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEE
Q 003423 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (821)
Q Consensus 192 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l 271 (821)
.+..++-|+-.|.|++.+... .+ .+...|... ..+|.++
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~----------------------------------~~-~~~~~~s~~------~~~Gey~ 86 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQG----------------------------------NP-KTNFDHSSS------ILEGEYV 86 (846)
T ss_pred hcceeeeccccceEEEEecCC----------------------------------cc-ccccccccc------ccCCceE
Confidence 456789999999999999871 11 222345444 5689999
Q ss_pred EEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC-------CEEEEEeCCCeEEEEcCC--Cceee-
Q 003423 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-------SFIITAGEDCTCRVWGSD--GKQLK- 341 (821)
Q Consensus 272 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-------~~l~s~~~dg~i~iwd~~--~~~~~- 341 (821)
+|||.||+|.|-.+.+.+. ........++.+++++| +.+++||.-| +.++.-. |....
T Consensus 87 asCS~DGkv~I~sl~~~~~-----------~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v 154 (846)
T KOG2066|consen 87 ASCSDDGKVVIGSLFTDDE-----------ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV 154 (846)
T ss_pred EEecCCCcEEEeeccCCcc-----------ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce
Confidence 9999999999999888765 35555677889999885 5899999999 7777641 22222
Q ss_pred EeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCc
Q 003423 342 MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (821)
Q Consensus 342 ~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~ 380 (821)
.+....| +|.++.|. |+++|=+..+| |++||...+
T Consensus 155 ~l~~~eG-~I~~i~W~--g~lIAWand~G-v~vyd~~~~ 189 (846)
T KOG2066|consen 155 VLSEGEG-PIHSIKWR--GNLIAWANDDG-VKVYDTPTR 189 (846)
T ss_pred eeecCcc-ceEEEEec--CcEEEEecCCC-cEEEecccc
Confidence 3455555 79999985 78888888777 899999553
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.011 Score=64.79 Aligned_cols=202 Identities=9% Similarity=0.053 Sum_probs=120.5
Q ss_pred cEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCC-----EEEEE
Q 003423 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN-----EIIVW 208 (821)
Q Consensus 134 ~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg-----~i~vw 208 (821)
.|.|+ ++ .+..+|.|+.+|.|.+.+- .-+.+..++....+++..+.. ..+..+|++-+.|+ .++||
T Consensus 27 ~isc~--~s---~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~---~~~~~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 27 AISCC--SS---STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYI---LNKQNFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred ceeEE--cC---CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhc---ccCceEEEEEeecCCCCceEEEEe
Confidence 45544 45 7889999999998877762 223335666555543222211 23445677665554 58999
Q ss_pred EcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeE--EEEec-----CCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 003423 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL--FRLVG-----HEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (821)
Q Consensus 209 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----h~~~I~~l~~s~~~~~l~s~s~Dg~i~ 281 (821)
+++... + + .+..++ .++.+ ...++.+++.+.+-+.+|.|-.||.|.
T Consensus 98 ~lek~~--~------------n-------------~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~ 150 (933)
T KOG2114|consen 98 DLEKVD--K------------N-------------NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVI 150 (933)
T ss_pred cccccC--C------------C-------------CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEE
Confidence 998211 0 0 011222 12222 245688899999988999999999999
Q ss_pred EEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcCCCce--eeEeecccCCCeEEEEEe
Q 003423 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQ--LKMIKEHIGRGIWRCLYD 357 (821)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~h~~~~i~~l~~~ 357 (821)
.+.-+--+-.. .+ ......-..+|+.+.+. +..++-+..-..|.+|.++|+. ...+..|.. ++.|..++
T Consensus 151 ~~~GDi~RDrg---sr---~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~-~lnCss~~ 223 (933)
T KOG2114|consen 151 CYKGDILRDRG---SR---QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGI-SLNCSSFS 223 (933)
T ss_pred EEcCcchhccc---cc---eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCc-cceeeecC
Confidence 88533211100 11 01222335689999997 3332333344578999997665 333444444 68888888
Q ss_pred cCCCEEEEEeCCCcEEEEEcCC
Q 003423 358 SLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 358 ~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
+....+++++.+ .+.+|+.++
T Consensus 224 ~~t~qfIca~~e-~l~fY~sd~ 244 (933)
T KOG2114|consen 224 DGTYQFICAGSE-FLYFYDSDG 244 (933)
T ss_pred CCCccEEEecCc-eEEEEcCCC
Confidence 766656666544 588998854
No 325
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.62 E-value=0.013 Score=62.80 Aligned_cols=150 Identities=8% Similarity=0.020 Sum_probs=81.6
Q ss_pred eeEEEEEeccCCCCCCcceEE-eec---CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEE-E
Q 003423 19 EISALCFVHLPSHLSSLPFLL-AGS---GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA-L 93 (821)
Q Consensus 19 ~Vt~l~~~~~p~~~~~~~~l~-~g~---~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~-~ 93 (821)
++..-.|+ || +..+++ +.. .+.|.++|+.+|+...... +.+ ......|+|++ + .++. .
T Consensus 189 ~~~~p~wS--pD---G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g-~~~~~~~SPDG-------~---~la~~~ 251 (419)
T PRK04043 189 LNIFPKWA--NK---EQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG-MLVVSDVSKDG-------S---KLLLTM 251 (419)
T ss_pred CeEeEEEC--CC---CCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC-cEEeeEECCCC-------C---EEEEEE
Confidence 45678899 99 333343 322 3789999999987644333 333 34456677553 2 2333 2
Q ss_pred Ec--CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC-CC--cEEEEEccCCc
Q 003423 94 FG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DN--SIRVWDISNSS 168 (821)
Q Consensus 94 ~g--~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~-d~--~i~iwd~~~~~ 168 (821)
.. +..|.++++..+. ...+..+........|+| ||+.|+-.+. .+ .|.+.|+.+++
T Consensus 252 ~~~g~~~Iy~~dl~~g~----------------~~~LT~~~~~d~~p~~SP---DG~~I~F~Sdr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 252 APKGQPDIYLYDTNTKT----------------LTQITNYPGIDVNGNFVE---DDKRIVFVSDRLGYPNIFMKKLNSGS 312 (419)
T ss_pred ccCCCcEEEEEECCCCc----------------EEEcccCCCccCccEECC---CCCEEEEEECCCCCceEEEEECCCCC
Confidence 22 3455555654321 223333333234567999 9987776553 23 57777887766
Q ss_pred eeEEEccCcceeEEEEeeccCCccCeEEEEEeeC---------CEEEEEEcc
Q 003423 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIY---------NEIIVWKVD 211 (821)
Q Consensus 169 ~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d---------g~i~vwd~~ 211 (821)
..+-....... ..+ +|++..|+..... ..|.+.|+.
T Consensus 313 ~~rlt~~g~~~----~~~---SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 313 VEQVVFHGKNN----SSV---STYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred eEeCccCCCcC----ceE---CCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 53322211111 122 5888877765543 256666655
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.021 Score=62.77 Aligned_cols=190 Identities=11% Similarity=0.126 Sum_probs=117.0
Q ss_pred CccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCc-EEEEEEcCCC
Q 003423 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS-IFRIEWSSCG 268 (821)
Q Consensus 190 s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-I~~l~~s~~~ 268 (821)
++.+..+|.|+.+|.|.+.+-. .+.++.+.++... |..+....+.
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s----------------------------------~~~~~~fqa~~~siv~~L~~~~~~ 77 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSS----------------------------------FQLIRGFQAYEQSIVQFLYILNKQ 77 (933)
T ss_pred cCCCceEEEeeccccEEEeccc----------------------------------ceeeehheecchhhhhHhhcccCc
Confidence 3577889999999998887754 3445667777777 5555444444
Q ss_pred CEEEEEeCCC-----eEEEEecccCcccCCCCceeeeceEEec-----cceeEEEEEEc--CCEEEEEeCCCeEEEEcCC
Q 003423 269 SKLVSVSDDR-----SARIWEVRAEYWKDSDSIEEVGSSVLYG-----HNARVWDCCLT--DSFIITAGEDCTCRVWGSD 336 (821)
Q Consensus 269 ~~l~s~s~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~~ 336 (821)
.+|++.+.|+ .++||++..-....+ .+++....... ...++.+++.+ -..++.|-.+|.|..+.-+
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~s--P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD 155 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNS--PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD 155 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCC--cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc
Confidence 7889888875 489999987533111 22331112233 24556777777 4788999999999988642
Q ss_pred ---Cceee-EeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccce
Q 003423 337 ---GKQLK-MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQI 412 (821)
Q Consensus 337 ---~~~~~-~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (821)
.+-.+ .+....+.+|+.+++..++..++-...-..|.+|.+.++.+ ..
T Consensus 156 i~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p----------------------------~~ 207 (933)
T KOG2114|consen 156 ILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTP----------------------------SL 207 (933)
T ss_pred chhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCc----------------------------ce
Confidence 11112 22222234799999988887633333345689998865320 01
Q ss_pred eccCCCCcceEEEEeecCCeEEEEecCCcEE
Q 003423 413 RLTDSKSEYVRCLHLTSEDTLYIATNHGYLY 443 (821)
Q Consensus 413 ~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~ 443 (821)
...+.++....|.+|++...-++++....++
T Consensus 208 ~~ld~~G~~lnCss~~~~t~qfIca~~e~l~ 238 (933)
T KOG2114|consen 208 KVLDNNGISLNCSSFSDGTYQFICAGSEFLY 238 (933)
T ss_pred eeeccCCccceeeecCCCCccEEEecCceEE
Confidence 1223445567888888765545555444554
No 327
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.004 Score=67.70 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=79.7
Q ss_pred EEEEEeecCCCCCEEEEEEC----CCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 136 FDVCFLKVCNGNRSLAIGCS----DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 136 ~~~~~~~~~~~~~~l~t~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
+-..|+| ...++|+++- .|+|.||- ++|+.-.....|.. +.|+++ .|...+|+.|-.-|.+.+|...
T Consensus 19 ti~SWHP---sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h--atSLCW---Hpe~~vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 19 TISSWHP---SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH--ATSLCW---HPEEFVLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred cccccCC---CCceeEEEEecCCCCceEEEEe-cCCCCCccccccee--hhhhcc---ChHHHHHhhccccceeEEEecC
Confidence 3456788 7778888753 57888874 55654333333322 223444 2678889999999999999987
Q ss_pred cCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeccc
Q 003423 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (821)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~ 287 (821)
..+.-.....|..+|..+.||++|..|+|+..-|.|.+|....
T Consensus 90 ---------------------------------~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 90 ---------------------------------TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ---------------------------------CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 2222333357999999999999999999999999999998764
No 328
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.48 E-value=0.031 Score=60.83 Aligned_cols=239 Identities=9% Similarity=-0.043 Sum_probs=127.1
Q ss_pred cceEEeec--CCeEEEEECCCCeeeeEEEeeccccEEeEEec--ccc----------CCCCCCccceeeEEEEEc--CCe
Q 003423 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN--FIN----------CTEGSVSTRVTFEVALFG--EKR 98 (821)
Q Consensus 35 ~~~l~~g~--~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~--~~~----------~~~~~~~~~~~~~l~~~g--~~~ 98 (821)
++||.... .+.|-..++...+.-+.++.+..+.+|++.+. |.- .+..+|++ .+.... .+.
T Consensus 141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk----~l~~~~ey~~~ 216 (635)
T PRK02888 141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGK----DLDDPKKYRSL 216 (635)
T ss_pred eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCC----EeecccceeEE
Confidence 67888876 58888888888777777777777778998875 221 23333433 111111 244
Q ss_pred EEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcc
Q 003423 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER 178 (821)
Q Consensus 99 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~ 178 (821)
+.+.|.+. .+...++.- .+...-++++| +|+++++.+.+. +.+..+..+.....
T Consensus 217 vSvID~et---------------meV~~qV~V-dgnpd~v~~sp---dGk~afvTsyNs-------E~G~tl~em~a~e~ 270 (635)
T PRK02888 217 FTAVDAET---------------MEVAWQVMV-DGNLDNVDTDY---DGKYAFSTCYNS-------EEGVTLAEMMAAER 270 (635)
T ss_pred EEEEECcc---------------ceEEEEEEe-CCCcccceECC---CCCEEEEeccCc-------ccCcceeeeccccC
Confidence 44444432 122222221 12334577888 888887775321 22222333322222
Q ss_pred eeEEEEee---ccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecC
Q 003423 179 CLLYSMKL---WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (821)
Q Consensus 179 ~~~~s~~~---~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 255 (821)
..+....+ ....+++.+...+ ++.|.+.|..+... ........+. -
T Consensus 271 d~~vvfni~~iea~vkdGK~~~V~--gn~V~VID~~t~~~----------------------------~~~~v~~yIP-V 319 (635)
T PRK02888 271 DWVVVFNIARIEEAVKAGKFKTIG--GSKVPVVDGRKAAN----------------------------AGSALTRYVP-V 319 (635)
T ss_pred ceEEEEchHHHHHhhhCCCEEEEC--CCEEEEEECCcccc----------------------------CCcceEEEEE-C
Confidence 11111100 0012455555543 57899999871000 0022333332 3
Q ss_pred CCcEEEEEEcCCCCEEEEE-eCCCeEEEEecccCcccCCCCce---eeeceEEeccceeEEEEEEc--CCEEEEEeCCCe
Q 003423 256 EGSIFRIEWSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIE---EVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT 329 (821)
Q Consensus 256 ~~~I~~l~~s~~~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~ 329 (821)
.....++.++|||++++.+ ..+.+|.|.|+.+.+..-...++ .+- ....- ...-...+|. ++...|...|..
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vv-aevev-GlGPLHTaFDg~G~aytslf~dsq 397 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVV-AEPEL-GLGPLHTAFDGRGNAYTTLFLDSQ 397 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEE-Eeecc-CCCcceEEECCCCCEEEeEeecce
Confidence 4456889999999987554 55899999999875420000000 000 01111 2223456676 467777889999
Q ss_pred EEEEcCC
Q 003423 330 CRVWGSD 336 (821)
Q Consensus 330 i~iwd~~ 336 (821)
|..|+++
T Consensus 398 v~kwn~~ 404 (635)
T PRK02888 398 IVKWNIE 404 (635)
T ss_pred eEEEehH
Confidence 9999983
No 329
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.47 E-value=0.046 Score=58.70 Aligned_cols=189 Identities=10% Similarity=0.110 Sum_probs=104.5
Q ss_pred cEEEEEEeecCCCCCE-EEEEEC---CCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEE-EEeeC--CEEE
Q 003423 134 WVFDVCFLKVCNGNRS-LAIGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIY--NEII 206 (821)
Q Consensus 134 ~I~~~~~~~~~~~~~~-l~t~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~-sg~~d--g~i~ 206 (821)
.+....|+| +|+. ++..+. +..|.++|+.+++...-..... ......+ +||+..|+ +.+.+ ..|.
T Consensus 189 ~~~~p~wSp---DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g--~~~~~~~---SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 189 LNIFPKWAN---KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG--MLVVSDV---SKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred CeEeEEECC---CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC--cEEeeEE---CCCCCEEEEEEccCCCcEEE
Confidence 788899999 9874 554433 3468889998876543322222 1222333 57886555 34434 4566
Q ss_pred EEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeC-CC--eEEEE
Q 003423 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR--SARIW 283 (821)
Q Consensus 207 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~-Dg--~i~iw 283 (821)
++++. ... ...+..+.+......|+|||+.|+-.++ .+ .|.+.
T Consensus 261 ~~dl~---------------------------------~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~ 306 (419)
T PRK04043 261 LYDTN---------------------------------TKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMK 306 (419)
T ss_pred EEECC---------------------------------CCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEE
Confidence 66765 111 2223333333345679999987765553 33 56666
Q ss_pred ecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC---------CeEEEEcCCCceeeEeecccCCCeE
Q 003423 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---------CTCRVWGSDGKQLKMIKEHIGRGIW 352 (821)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~h~~~~i~ 352 (821)
|+.+++. +.+ ...+.. ...|+ ++.++..... ..|.+.|+++...+.+.... ...
T Consensus 307 dl~~g~~------~rl---t~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~--~~~ 371 (419)
T PRK04043 307 KLNSGSV------EQV---VFHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG--VNQ 371 (419)
T ss_pred ECCCCCe------EeC---ccCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC--CcC
Confidence 7766543 111 111211 23566 4555544432 35777777555555555432 233
Q ss_pred EEEEecCCCEEEEEeCC-C--cEEEEEcCC
Q 003423 353 RCLYDSLSSLLVTAGFD-S--AIKVHQFQA 379 (821)
Q Consensus 353 ~l~~~~~~~~l~tg~~d-g--~I~iwd~~~ 379 (821)
...|+|||+.|+....+ + .+.+.++++
T Consensus 372 ~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 372 FPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 67899999987665543 2 244455544
No 330
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0077 Score=60.06 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=70.6
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCC-EEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEe
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (821)
++...-+++|...|.+++|+| ..+ +|..++.++.|+|.|+++...+.....+ ..+||+++.-+ +..+|.+|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp---~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDld--e~h~IYaGl 255 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSP---FNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLD--ERHVIYAGL 255 (463)
T ss_pred cchhhcccccchhhhhhccCc---cccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccC--CcceeEEec
Confidence 445557788999999999999 554 7888999999999999999888777766 45888887543 478999999
Q ss_pred eCCEEEEEEcccCC
Q 003423 201 IYNEIIVWKVDWEH 214 (821)
Q Consensus 201 ~dg~i~vwd~~~~~ 214 (821)
..|.|.|||++..+
T Consensus 256 ~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 256 QNGMVLVYDMRQPE 269 (463)
T ss_pred cCceEEEEEccCCC
Confidence 99999999998443
No 331
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.40 E-value=0.11 Score=50.63 Aligned_cols=206 Identities=8% Similarity=0.051 Sum_probs=108.9
Q ss_pred eeeccCCCCcEEEEEEeecCCCCC-EEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCC
Q 003423 125 VQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (821)
Q Consensus 125 ~~~~~~h~~~I~~~~~~~~~~~~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg 203 (821)
.+.+++-.+.+..++|.| +.+ ++++....+.|...+. +|+.++++.-..-.-.-.+.+ -.++.++++.-.++
T Consensus 14 ~~~l~g~~~e~SGLTy~p---d~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y---~g~~~~vl~~Er~~ 86 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNP---DTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITY---LGNGRYVLSEERDQ 86 (248)
T ss_dssp EEE-TT--S-EEEEEEET---TTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE----STTEEEEEETTTT
T ss_pred eeECCCccCCccccEEcC---CCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEE---ECCCEEEEEEcCCC
Confidence 356667777799999999 655 5555556677766675 577777765332111222333 24667777776789
Q ss_pred EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE-----ecCCCcEEEEEEcCCCCEEEEEeCCC
Q 003423 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-----VGHEGSIFRIEWSSCGSKLVSVSDDR 278 (821)
Q Consensus 204 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~I~~l~~s~~~~~l~s~s~Dg 278 (821)
.+.+.++...... ........+ ..+...+-+|+|+|.++.|+.+-...
T Consensus 87 ~L~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~ 139 (248)
T PF06977_consen 87 RLYIFTIDDDTTS---------------------------LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK 139 (248)
T ss_dssp EEEEEEE----TT-----------------------------EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESS
T ss_pred cEEEEEEeccccc---------------------------cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC
Confidence 9999998511000 011111111 13556799999999888887777777
Q ss_pred eEEEEecccCcccCCCCceeeec---eEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcCCCceeeEeecccC----
Q 003423 279 SARIWEVRAEYWKDSDSIEEVGS---SVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG---- 348 (821)
Q Consensus 279 ~i~iwd~~~~~~~~~~~~~~~~~---~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~---- 348 (821)
..+++.+..... ......... .........+.+++++ +.+++-..++..+...|.+|+.+..+.-..+
T Consensus 140 P~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl 217 (248)
T PF06977_consen 140 PKRLYEVNGFPG--GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGL 217 (248)
T ss_dssp SEEEEEEESTT---SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-
T ss_pred ChhhEEEccccC--ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCc
Confidence 778887765110 000111100 0011233456788887 4578888899999999999988776654331
Q ss_pred ----CCeEEEEEecCCCEEEEE
Q 003423 349 ----RGIWRCLYDSLSSLLVTA 366 (821)
Q Consensus 349 ----~~i~~l~~~~~~~~l~tg 366 (821)
...-.|+++++|++.+++
T Consensus 218 ~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 218 SKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp SS---SEEEEEE-TT--EEEEE
T ss_pred ccccCCccEEEECCCCCEEEEc
Confidence 236789999998655554
No 332
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.36 E-value=0.042 Score=58.83 Aligned_cols=225 Identities=13% Similarity=0.119 Sum_probs=115.4
Q ss_pred EEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCC
Q 003423 68 LHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (821)
Q Consensus 68 i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~ 147 (821)
...++.+|.+ ..+++.|++.-.||.-.. ++... .+.-...+|.+ .+
T Consensus 35 p~~ls~npng-----------r~v~V~g~geY~iyt~~~---------------~r~k~-----~G~g~~~vw~~---~n 80 (443)
T PF04053_consen 35 PQSLSHNPNG-----------RFVLVCGDGEYEIYTALA---------------WRNKA-----FGSGLSFVWSS---RN 80 (443)
T ss_dssp -SEEEE-TTS-----------SEEEEEETTEEEEEETTT---------------TEEEE-----EEE-SEEEE-T---SS
T ss_pred CeeEEECCCC-----------CEEEEEcCCEEEEEEccC---------------Ccccc-----cCceeEEEEec---Cc
Confidence 4556666553 588889999999988211 11111 13345688886 55
Q ss_pred CEEEEEECCCcEEEEEccCCceeEEEccCcc-eeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcc
Q 003423 148 RSLAIGCSDNSIRVWDISNSSIILEVHSPER-CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (821)
Q Consensus 148 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 226 (821)
+ +|+-...+.|.|+.--+......++.+.. .-++ . |.+|+..+ ++.|.+||+.
T Consensus 81 ~-yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If--------~-G~LL~~~~-~~~i~~yDw~--------------- 134 (443)
T PF04053_consen 81 R-YAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIF--------G-GNLLGVKS-SDFICFYDWE--------------- 134 (443)
T ss_dssp E-EEEE-TTS-EEEEETTEE-TT-----SS-EEEEE----------SSSEEEEE-TTEEEEE-TT---------------
T ss_pred c-EEEEECCCeEEEEEcCccccceEEcCCcccceEE--------c-CcEEEEEC-CCCEEEEEhh---------------
Confidence 5 66666688899963323333333443321 1122 1 55555554 3589999999
Q ss_pred cCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCccc--CCCCce-eeeceE
Q 003423 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK--DSDSIE-EVGSSV 303 (821)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~--~~~~~~-~~~~~~ 303 (821)
+.+.+.++... .|..+.|++++++++-.+.| ++.|++....... .....+ .+ ..
T Consensus 135 ------------------~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f--~~ 191 (443)
T PF04053_consen 135 ------------------TGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAF--EL 191 (443)
T ss_dssp ------------------T--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGE--EE
T ss_pred ------------------HcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhce--EE
Confidence 77778877633 48999999999999888865 6777765543000 000000 01 22
Q ss_pred EeccceeEEEEEEcCCEEEEEeCCCeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 304 LYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 304 ~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
...-..+|.+.+|.++.++-.... .++. +-+....++..-.. ++.-+.+.++.+.++....|+.|..+.++.
T Consensus 192 ~~E~~~~IkSg~W~~d~fiYtT~~-~lkY--l~~Ge~~~i~~ld~-~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 192 IHEISERIKSGCWVEDCFIYTTSN-HLKY--LVNGETGIIAHLDK-PLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEE-S--SEEEEETTEEEEE-TT-EEEE--EETTEEEEEEE-SS---EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEEecceeEEEEEEcCEEEEEcCC-eEEE--EEcCCcceEEEcCC-ceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 223266788888986655544444 6665 32233334433333 678888888888999999999999998743
No 333
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.024 Score=56.66 Aligned_cols=76 Identities=12% Similarity=0.182 Sum_probs=62.9
Q ss_pred eEEeccceeEEEEEEcC---CEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEE
Q 003423 302 SVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQ 376 (821)
Q Consensus 302 ~~~~~h~~~i~~v~~~~---~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~~~~~~-~~l~tg~~dg~I~iwd 376 (821)
..+.+|...|.+++|++ .++..++.+.+|++.|+ +...+..+..+. .+|+++|+-+. .+|+.|-.+|.|.+||
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~--~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN--QIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC--CceeeeeccCCcceeEEeccCceEEEEE
Confidence 35667888899999994 57899999999999999 556666777773 69999998765 6788888999999999
Q ss_pred cCC
Q 003423 377 FQA 379 (821)
Q Consensus 377 ~~~ 379 (821)
++.
T Consensus 265 ~R~ 267 (463)
T KOG1645|consen 265 MRQ 267 (463)
T ss_pred ccC
Confidence 965
No 334
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.33 E-value=0.18 Score=54.02 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=40.2
Q ss_pred eEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEe
Q 003423 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELN 105 (821)
Q Consensus 45 ~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~ 105 (821)
.|.||+. +|+++.++.-.. .+|.++.|..+ +.++++..+|.+++||+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~-~~iv~~~wt~~-----------e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS-GRIVGMGWTDD-----------EELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECC-CCCEeEEEEECC-CCEEEEEECCC-----------CeEEEEEcCCEEEEEeCC
Confidence 5999994 688888888655 68999999854 469999999999999985
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.035 Score=59.82 Aligned_cols=140 Identities=16% Similarity=0.180 Sum_probs=89.1
Q ss_pred EEEEEcCCEEEEEeCCCeEEEEcCCCceeeEeec--ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCc
Q 003423 312 WDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHP 389 (821)
Q Consensus 312 ~~v~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~ 389 (821)
+++.-..++++.|+.-|.+.+++-.+..+..++. ..+ .+..+.++++..++|.|+..|.|.++.++......
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~-~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~----- 112 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATG-ITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD----- 112 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccc-eEEEEEecchhHhhhhhcCCceEEeehhhccCCCc-----
Confidence 4555558999999999999999986655555544 333 35567788988999999999999999885421111
Q ss_pred cccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCC-eEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceE
Q 003423 390 EAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPII 468 (821)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~-~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~ 468 (821)
..++. . .-..|...|++++|++++ +++.+-..|.+....+............-.....+|.
T Consensus 113 --------~~~~t-~---------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IV 174 (726)
T KOG3621|consen 113 --------LDYVT-P---------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIV 174 (726)
T ss_pred --------ceeec-c---------ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceE
Confidence 00100 0 011256789999999998 5666667788877666542111111111123356677
Q ss_pred EEeccCC
Q 003423 469 CMDLLSN 475 (821)
Q Consensus 469 ~~~~~~~ 475 (821)
-++....
T Consensus 175 QlD~~q~ 181 (726)
T KOG3621|consen 175 QLDYLQS 181 (726)
T ss_pred Eeecccc
Confidence 7776553
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.32 E-value=0.16 Score=55.59 Aligned_cols=99 Identities=11% Similarity=0.025 Sum_probs=63.0
Q ss_pred CCCEEEEEeCCCeEEEEeccc----CcccCCCCceeeeceEEeccceeEEEEEEcC--CEE-EEEeCCCeEEEEcCCC-c
Q 003423 267 CGSKLVSVSDDRSARIWEVRA----EYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFI-ITAGEDCTCRVWGSDG-K 338 (821)
Q Consensus 267 ~~~~l~s~s~Dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l-~s~~~dg~i~iwd~~~-~ 338 (821)
+|++... .++.|.+.|..+ +.. + .....-....+.+.+++ .++ +++..+.++.+.|+.. +
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~-----v-----~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSA-----L-----TRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcc-----e-----EEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 4444333 245677888776 111 1 23333455667888883 555 4555789999999832 2
Q ss_pred ------------eeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 339 ------------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 339 ------------~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
.+....--. .-...+|+++|+...|-..|..|..|++..
T Consensus 355 ~~~~~~~~~~~~vvaevevGl--GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 355 DLFDGKIKPRDAVVAEPELGL--GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhccCCccceEEEeeccCC--CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 123333222 345788999999888888999999999954
No 337
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.32 E-value=0.00075 Score=43.99 Aligned_cols=38 Identities=34% Similarity=0.605 Sum_probs=33.8
Q ss_pred eeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 003423 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (821)
Q Consensus 247 ~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd 284 (821)
.+...+.+|...|.++.|.++++.+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566678999999999999999999999999999996
No 338
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.25 E-value=0.45 Score=52.64 Aligned_cols=97 Identities=8% Similarity=0.018 Sum_probs=54.1
Q ss_pred EEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEE------------------eCCCeEE
Q 003423 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITA------------------GEDCTCR 331 (821)
Q Consensus 270 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~------------------~~dg~i~ 331 (821)
.++.++.+|.+...|..+++. .-.. ... ...+...++.++.+ ..+|.+.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~-----~W~~---~~~-----~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~ 369 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKL-----ISAR---PEV-----EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLA 369 (488)
T ss_pred EEEEECCCceEEEEECCCCcE-----eeEe---Eee-----ccccccCCceEEEccccccccCcccccCCCCCCCceEEE
Confidence 577788899999999998865 2111 000 01122223333332 2356777
Q ss_pred EEcC-CCceeeEeecccC-------CCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 332 VWGS-DGKQLKMIKEHIG-------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 332 iwd~-~~~~~~~~~~h~~-------~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
..|. +|+.+-+...... .+...-.....+..|+.++.||.|..+|.++
T Consensus 370 AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 370 ALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred EEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCC
Confidence 7777 6665555433210 0111111112457899999999999999854
No 339
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.17 E-value=0.00039 Score=75.53 Aligned_cols=198 Identities=10% Similarity=0.125 Sum_probs=123.0
Q ss_pred ccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEe
Q 003423 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (821)
Q Consensus 121 ~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (821)
+++..+.+..|+...+|++|+- +.+.|++|+..|.|+++++.+|.......+|...+ .....+.++..+.+.+
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~---~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sav----T~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSG---GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAV----TLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred hcccchhhhccccceeeEEeec---CCceEEeeeccceEEEEEccCcccccccccccccc----ccccccCCcceeeeec
Confidence 4667788888999999999998 88999999999999999999998877777666532 2223356776666655
Q ss_pred eCC--EEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCC
Q 003423 201 IYN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (821)
Q Consensus 201 ~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg 278 (821)
... -..+|++. ..+.+.+++.+ -.++.|+...+.-+.|..-.
T Consensus 1163 s~S~PlsaLW~~~--------------------------------s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d 1206 (1516)
T KOG1832|consen 1163 SSSSPLSALWDAS--------------------------------STGGPRHSFDE----DKAVKFSNSLQFRALGTEAD 1206 (1516)
T ss_pred cccCchHHHhccc--------------------------------cccCccccccc----cceeehhhhHHHHHhccccc
Confidence 443 35678876 13444555443 34688887544333333335
Q ss_pred eEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEEeCCCeEEEEcC-CCceeeEeecccCCCeEEEE
Q 003423 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCL 355 (821)
Q Consensus 279 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~~i~~l~ 355 (821)
...+||++++.. ..... .-..+.+-.-.+..|+| .+++ .|| .+||. ..+.++.|..... --.-.
T Consensus 1207 ~a~~YDvqT~~~-----l~tyl-t~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~--~~~G~ 1273 (1516)
T KOG1832|consen 1207 DALLYDVQTCSP-----LQTYL-TDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTD--YGGGG 1273 (1516)
T ss_pred ceEEEecccCcH-----HHHhc-CcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhee--ccccc
Confidence 688999999765 22100 00111111114556663 3333 233 36887 3344555443332 12346
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCC
Q 003423 356 YDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 356 ~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
|+|.|..++.-+ .+||+++
T Consensus 1274 FHP~g~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1274 FHPSGNEVIINS-----EIWDMRT 1292 (1516)
T ss_pred ccCCCceEEeec-----hhhhhHH
Confidence 899999888766 4899865
No 340
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.17 E-value=0.67 Score=52.49 Aligned_cols=107 Identities=13% Similarity=0.180 Sum_probs=69.8
Q ss_pred CCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcc
Q 003423 533 LGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (821)
Q Consensus 533 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~ 612 (821)
-+|+++|. -+..|++|++.... ++ .. ...|..++..+...-.+..++.|+--+++.+-.....
T Consensus 838 fngkllA~--In~~vrLye~t~~~-------------eL-r~-e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 838 FNGKLLAG--INQSVRLYEWTTER-------------EL-RI-ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred hCCeEEEe--cCcEEEEEEccccc-------------ee-hh-hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 35677755 45679999998762 11 11 2466777899999999999999999998887665432
Q ss_pred cccccccccccccCcccccccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEeecC
Q 003423 613 LLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (821)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~ 672 (821)
........+.-+++ -.+++.+. ++ ..++-+-.+|.+.+-+.+.+
T Consensus 901 -----------eg~f~evArD~~p~-Wmtaveil---~~-d~ylgae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 901 -----------EGNFEEVARDYNPN-WMTAVEIL---DD-DTYLGAENSGNLFTVRKDSD 944 (1096)
T ss_pred -----------CCceEEeehhhCcc-ceeeEEEe---cC-ceEEeecccccEEEEEecCC
Confidence 21122233335544 45666676 33 44566667888888877643
No 341
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.10 E-value=0.046 Score=61.86 Aligned_cols=153 Identities=10% Similarity=0.069 Sum_probs=96.8
Q ss_pred cceEEeec--CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCC
Q 003423 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNS 112 (821)
Q Consensus 35 ~~~l~~g~--~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~ 112 (821)
..+|+... ...|+-.|+++|+++.....+...+|..+......-...+ ...+++..++.+..||......+
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~-----e~tflGls~n~lfriDpR~~~~k-- 565 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTN-----EQTFLGLSDNSLFRIDPRLSGNK-- 565 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCC-----CceEEEECCCceEEeccCCCCCc--
Confidence 45555543 4789999999999999999887766777776543322222 25888889999999998854200
Q ss_pred CCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCcc
Q 003423 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (821)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~ 192 (821)
+.....+.+ .......|++-+. +| +||+|+.+|.||+||- .+..-++.-..-+..+..+.. +.|
T Consensus 566 -------~v~~~~k~Y-~~~~~Fs~~aTt~---~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDv---t~D 629 (794)
T PF08553_consen 566 -------LVDSQSKQY-SSKNNFSCFATTE---DG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDV---TAD 629 (794)
T ss_pred -------eeecccccc-ccCCCceEEEecC---Cc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEe---cCC
Confidence 000011122 1234577777664 44 7999999999999994 333333322232334555555 578
Q ss_pred CeEEEEEeeCCEEEEEEcc
Q 003423 193 ALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 193 ~~~l~sg~~dg~i~vwd~~ 211 (821)
|.+|++.+ +..|.+.+..
T Consensus 630 GkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 630 GKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CcEEEEee-cceEEEEEEe
Confidence 88877554 4667777754
No 342
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.08 E-value=0.052 Score=44.58 Aligned_cols=69 Identities=22% Similarity=0.358 Sum_probs=48.8
Q ss_pred EEEEEEeecCCCC-CEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 135 VFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 135 I~~~~~~~~~~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
|+++++...+.+| +.|++|+.|..||+|+ ..+.+.++....... ++.. .....++.|..+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~--~L~~----~~~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVT--SLCS----LGGGRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceE--EEEE----cCCCEEEEEecCCEEEEEeCc
Confidence 6778887643333 6899999999999997 345666666555433 2222 234679999999999999865
No 343
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.07 E-value=0.15 Score=53.90 Aligned_cols=176 Identities=13% Similarity=0.095 Sum_probs=95.6
Q ss_pred eeeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeec-------cccEEeEEeccccCCCCCCcccee
Q 003423 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFH-------GIRLHGISCNFINCTEGSVSTRVT 88 (821)
Q Consensus 17 ~~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~-------~~~i~~i~~~~~~~~~~~~~~~~~ 88 (821)
.++|+|++.| . -.++++|. +|.|.|.|+.....+..-...+ ...|..|.|.-. ..+.|+....
T Consensus 86 ~g~vtal~~S--~-----iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm--~~~~D~ySSi 156 (395)
T PF08596_consen 86 QGPVTALKNS--D-----IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVM--TLGGDGYSSI 156 (395)
T ss_dssp S-SEEEEEE---B-----TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEE--E-TTSSSEEE
T ss_pred CCcEeEEecC--C-----CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEE--ecCCCcccce
Confidence 5889999998 2 35888887 7999999998888887744322 335777777632 2233433234
Q ss_pred eEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecC-------------------CCCCE
Q 003423 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC-------------------NGNRS 149 (821)
Q Consensus 89 ~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~-------------------~~~~~ 149 (821)
.+++....|.+.+|.+.... . +....+.......+.+.|..+..-..+ ....+
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~--~------g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSS--N------GRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-G--G------G-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred EEEEEeCCCCEEEEEEecCC--C------CceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 55666678999999997432 0 111222333334566777777643110 00123
Q ss_pred EEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccC--CccCeEEEEEeeCCEEEEEEcc
Q 003423 150 LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGD--NLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 150 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~--s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
+++ ..+..+|++...+.+...+.. .......++.+... ...+..|++-..+|.|+++.+-
T Consensus 229 vVv-vSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 229 VVV-VSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp EEE-E-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred EEE-EcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 444 447889999988877655544 22122222333211 1256678888899999999987
No 344
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.00 E-value=0.97 Score=51.30 Aligned_cols=77 Identities=10% Similarity=0.033 Sum_probs=48.3
Q ss_pred CCCcEEEEEEeecCCCCC---EEEEEECCCcEEEEEcc-CCceeEEEcc----CcceeEEEEeeccCCccCeEEEEEeeC
Q 003423 131 LSHWVFDVCFLKVCNGNR---SLAIGCSDNSIRVWDIS-NSSIILEVHS----PERCLLYSMKLWGDNLEALRIASGTIY 202 (821)
Q Consensus 131 h~~~I~~~~~~~~~~~~~---~l~t~~~d~~i~iwd~~-~~~~~~~~~~----~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (821)
....|.|++++|.+++.+ ++|+|..+..+.+--.. +...+..... -.+++++.. ...|..+|.++..|
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~----~e~d~~yLlvalgd 604 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTT----FEGDIHYLLVALGD 604 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEE----eeccceEEEEEcCC
Confidence 346799999998544444 88999877665544333 3332222211 223444443 23568899999999
Q ss_pred CEEEEEEcc
Q 003423 203 NEIIVWKVD 211 (821)
Q Consensus 203 g~i~vwd~~ 211 (821)
|.+.-+-++
T Consensus 605 G~l~~fv~d 613 (1096)
T KOG1897|consen 605 GALLYFVLD 613 (1096)
T ss_pred ceEEEEEEE
Confidence 999987766
No 345
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.91 E-value=0.04 Score=45.22 Aligned_cols=100 Identities=16% Similarity=0.117 Sum_probs=66.9
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEEE
Q 003423 259 IFRIEWSS---CG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (821)
Q Consensus 259 I~~l~~s~---~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iw 333 (821)
|+++++.. +| +.|+.|++|..||+|+-..- ..-..-...|.+++.. +..++.+-++|+|-+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~-------------~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY 68 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI-------------VAEITETDKVTSLCSLGGGRFAYALANGTVGVY 68 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE-------------EEEEecccceEEEEEcCCCEEEEEecCCEEEEE
Confidence 56666654 33 57999999999999986542 1233335567777766 6899999999999999
Q ss_pred cCCCceeeEeecccCCCeEEEEEe-cC--C-CEEEEEeCCCcEEE
Q 003423 334 GSDGKQLKMIKEHIGRGIWRCLYD-SL--S-SLLVTAGFDSAIKV 374 (821)
Q Consensus 334 d~~~~~~~~~~~h~~~~i~~l~~~-~~--~-~~l~tg~~dg~I~i 374 (821)
+-..+ +-..+... .+.++++. .+ | .-|++|-.+|.|-+
T Consensus 69 ~~~~R-lWRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 69 DRSQR-LWRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eCcce-eeeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 86322 22333222 36666553 33 2 47999999998743
No 346
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.86 E-value=0.3 Score=56.41 Aligned_cols=249 Identities=12% Similarity=0.119 Sum_probs=128.6
Q ss_pred CCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 132 ~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
++.|.++.|.. +++.++.+..+|.|.+-|.++.... +.+.....+-++.+ ++|+..++..+..+++.+-+..
T Consensus 68 d~~i~s~~fl~---d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aasw---S~Dee~l~liT~~~tll~mT~~ 139 (1265)
T KOG1920|consen 68 DDEIVSVQFLA---DTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASW---SPDEELLALITGRQTLLFMTKD 139 (1265)
T ss_pred CcceEEEEEec---ccceEEEEecCCcEEEEccccccee--eeeeccCceEEEee---cCCCcEEEEEeCCcEEEEEecc
Confidence 36899999998 8888999999999999987765431 22222222333433 6899999999888888876543
Q ss_pred cCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCccc
Q 003423 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (821)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~ 291 (821)
. .|....+. .... ...+....+-|-.....+ .|+. |....-+......
T Consensus 140 f---~~i~E~~L-------------------------~~d~-~~~sk~v~VGwGrkeTqf-rgs~-gr~~~~~~~~~ek- 187 (1265)
T KOG1920|consen 140 F---EPIAEKPL-------------------------DADD-ERKSKFVNVGWGRKETQF-RGSE-GRQAARQKIEKEK- 187 (1265)
T ss_pred c---cchhcccc-------------------------cccc-ccccccceecccccceee-ecch-hhhcccccccccc-
Confidence 1 11110000 0000 011112223332211111 1111 1111000000000
Q ss_pred CCCCceeeeceEEeccceeEEEEEEc--CCEEEEE----eCC-CeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEE
Q 003423 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA----GED-CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (821)
Q Consensus 292 ~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~----~~d-g~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~ 364 (821)
. . .... -...=.++.|. +.++++. ..+ ..+++||-+|..-.+-....+ -=.+++|-|.|..++
T Consensus 188 ----~--~--~~~~-~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~-l~~~LsWkPsgs~iA 257 (1265)
T KOG1920|consen 188 ----A--L--EQIE-QDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEG-LQHSLSWKPSGSLIA 257 (1265)
T ss_pred ----c--c--cchh-hccCCceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccc-cccceeecCCCCeEe
Confidence 0 0 0000 11122457776 3455552 233 799999987543322222222 235789999999998
Q ss_pred EEe---CCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEE-ecCC
Q 003423 365 TAG---FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHG 440 (821)
Q Consensus 365 tg~---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~-~~~g 440 (821)
+-. .|+.|.++.-++-.... |.++.| .....+..++|+.++.+|++ +...
T Consensus 258 ~iq~~~sd~~IvffErNGL~hg~----------------f~l~~p----------~de~~ve~L~Wns~sdiLAv~~~~~ 311 (1265)
T KOG1920|consen 258 AIQCKTSDSDIVFFERNGLRHGE----------------FVLPFP----------LDEKEVEELAWNSNSDILAVVTSNL 311 (1265)
T ss_pred eeeecCCCCcEEEEecCCccccc----------------cccCCc----------ccccchheeeecCCCCceeeeeccc
Confidence 854 45578888776521111 111111 11233889999999988877 2222
Q ss_pred cEEEEEecCCCcceee
Q 003423 441 YLYHTKLCDMDSVNWN 456 (821)
Q Consensus 441 ~~~~~~i~~~~~~~~~ 456 (821)
.-..+.+|...+..|-
T Consensus 312 e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 312 ENSLVQLWTTGNYHWY 327 (1265)
T ss_pred ccceEEEEEecCeEEE
Confidence 3223457776676664
No 347
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.82 E-value=0.17 Score=57.45 Aligned_cols=125 Identities=14% Similarity=0.028 Sum_probs=83.9
Q ss_pred ceeeEEEEecCCCc-EEEEEEcC-----CCCEEEEEeCCCeEEEEecccCcccCCCCceeee-ceEEeccceeEEEEEEc
Q 003423 245 TAVNLFRLVGHEGS-IFRIEWSS-----CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG-SSVLYGHNARVWDCCLT 317 (821)
Q Consensus 245 ~~~~~~~~~~h~~~-I~~l~~s~-----~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~h~~~i~~v~~~ 317 (821)
.++.+...+.|... |..++-.. +...-+.|-.+..+..||.+-... +.+. ....+.......|++-+
T Consensus 513 ~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~------k~v~~~~k~Y~~~~~Fs~~aTt 586 (794)
T PF08553_consen 513 RGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN------KLVDSQSKQYSSKNNFSCFATT 586 (794)
T ss_pred CCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC------ceeeccccccccCCCceEEEec
Confidence 66777777777644 55554321 123456677788999999986432 1110 01122344456777776
Q ss_pred -CCEEEEEeCCCeEEEEcCCCceeeE-eecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 318 -DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 318 -~~~l~s~~~dg~i~iwd~~~~~~~~-~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
..+|+.|+.+|.||+||-.|+.-++ +.+-. .+|..|.++.||++|+..+. ..+.+++.
T Consensus 587 ~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG-~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 587 EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLG-DPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred CCceEEEEeCCCcEEeecccchhhhhcCCCCC-CCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 6899999999999999985554444 44434 48999999999999887774 56777776
No 348
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.81 E-value=0.0025 Score=41.34 Aligned_cols=38 Identities=29% Similarity=0.488 Sum_probs=33.1
Q ss_pred ceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEE
Q 003423 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (821)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd 163 (821)
+....+..|.+.|.++.|.+ ++..+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP---DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC---CCCEEEEecCCCeEEEcC
Confidence 34566678889999999999 889999999999999996
No 349
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.74 E-value=0.78 Score=46.36 Aligned_cols=272 Identities=11% Similarity=0.095 Sum_probs=132.4
Q ss_pred cEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEe----------eCCEEEEEEcccCCcccCCCCCCCccc
Q 003423 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT----------IYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (821)
Q Consensus 158 ~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~ 227 (821)
.+.+.|..+++.+..+...-...+. + ++++..+++++ +.-.|.+||..
T Consensus 18 rv~viD~d~~k~lGmi~~g~~~~~~---~---spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~---------------- 75 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGFLGNVA---L---SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ---------------- 75 (342)
T ss_dssp EEEEEETTTTEEEEEEEEESSEEEE---E----TTSSEEEEEEEEEEETTEEEEEEEEEEEETT----------------
T ss_pred eEEEEECCCCcEEEEeecccCCcee---E---CCCCCEEEEEEEEEeccccccceeEEEEEecC----------------
Confidence 6888898888887766644332211 1 46777777644 34468899988
Q ss_pred CCCCCCcceeeecccccceeeEEEEecCC---C----cEEEEEEcCCCCEEEEE--eCCCeEEEEecccCcccCCCCcee
Q 003423 228 HGSSSDFKCFKLQDQQHTAVNLFRLVGHE---G----SIFRIEWSSCGSKLVSV--SDDRSARIWEVRAEYWKDSDSIEE 298 (821)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~----~I~~l~~s~~~~~l~s~--s~Dg~i~iwd~~~~~~~~~~~~~~ 298 (821)
+..+..++.-.. . ....++++.|+++++.. +--..|.|-|+..++. +.+
T Consensus 76 -----------------TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kv-----v~e 133 (342)
T PF06433_consen 76 -----------------TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKV-----VGE 133 (342)
T ss_dssp -----------------TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEE-----EEE
T ss_pred -----------------cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCce-----eee
Confidence 333333222111 1 11224666777765543 2334566777766554 322
Q ss_pred eeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEEEcC--CCceeeEeec---ccCCCeE-EEEEecCCCEEEEEeCCCc
Q 003423 299 VGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS--DGKQLKMIKE---HIGRGIW-RCLYDSLSSLLVTAGFDSA 371 (821)
Q Consensus 299 ~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~--~~~~~~~~~~---h~~~~i~-~l~~~~~~~~l~tg~~dg~ 371 (821)
+ . ....+.+-.. +..+.+.+.||++.-..+ +|+...+... ....++. .-++...+..++--+.+|.
T Consensus 134 i------~-~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~ 206 (342)
T PF06433_consen 134 I------D-TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGN 206 (342)
T ss_dssp E------E-GTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSE
T ss_pred e------c-CCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCE
Confidence 2 1 1112222222 578899999999998888 5666533211 1111222 3344555555655778898
Q ss_pred EEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeec-CCeEEEEecCCc-------EE
Q 003423 372 IKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS-EDTLYIATNHGY-------LY 443 (821)
Q Consensus 372 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~-~~~~l~~~~~g~-------~~ 443 (821)
|+--|+.+....-. .-+.+ -...+.-. .-..+.-.-+++++ .+.+++...+|. --
T Consensus 207 v~~~dlsg~~~~~~-------------~~~~~--~t~~e~~~--~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 207 VYSADLSGDSAKFG-------------KPWSL--LTDAEKAD--GWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp EEEEEETTSSEEEE-------------EEEES--S-HHHHHT--TEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred EEEEeccCCccccc-------------Ccccc--cCcccccc--CcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 88888865321110 00000 00000000 00112234456665 445555543322 11
Q ss_pred EEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCC
Q 003423 444 HTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (821)
Q Consensus 444 ~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~ 505 (821)
.+..++..+.+ .+.+.+.+.++.++.+..+. ...++++...++.+.+||..+++
T Consensus 270 eVWv~D~~t~k--rv~Ri~l~~~~~Si~Vsqd~------~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 270 EVWVYDLKTHK--RVARIPLEHPIDSIAVSQDD------KPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEEEETTTTE--EEEEEEEEEEESEEEEESSS------S-EEEEEETTTTEEEEEETTT--
T ss_pred EEEEEECCCCe--EEEEEeCCCccceEEEccCC------CcEEEEEcCCCCeEEEEeCcCCc
Confidence 22233444433 44444444455566665532 22344555678999999987754
No 350
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.67 E-value=0.81 Score=50.59 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=26.8
Q ss_pred EEEcCCEEEEEeCCCeEEEEcC-CCceeeEeecc
Q 003423 314 CCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (821)
Q Consensus 314 v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h 346 (821)
+...++.++.++.||.+..+|. +|+.+-+++..
T Consensus 402 ~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 402 LATAGNLVFAGAADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred eEecCCeEEEECCCCeEEEEECCCCceeeEEECC
Confidence 3445788999999999999998 88888777653
No 351
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.62 E-value=0.52 Score=50.65 Aligned_cols=224 Identities=13% Similarity=0.099 Sum_probs=110.6
Q ss_pred eeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEE-cCC
Q 003423 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEK 97 (821)
Q Consensus 19 ~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g~~ 97 (821)
....|.++ |+ +++++++.+|.-.||.....+....- .-..+.|.+. ..+++. ..+
T Consensus 34 ~p~~ls~n--pn----gr~v~V~g~geY~iyt~~~~r~k~~G------~g~~~vw~~~------------n~yAv~~~~~ 89 (443)
T PF04053_consen 34 YPQSLSHN--PN----GRFVLVCGDGEYEIYTALAWRNKAFG------SGLSFVWSSR------------NRYAVLESSS 89 (443)
T ss_dssp --SEEEE---TT----SSEEEEEETTEEEEEETTTTEEEEEE------E-SEEEE-TS------------SEEEEE-TTS
T ss_pred CCeeEEEC--CC----CCEEEEEcCCEEEEEEccCCcccccC------ceeEEEEecC------------ccEEEEECCC
Confidence 36788899 98 78999999999999995554433221 2344566643 134444 478
Q ss_pred eEEEEE-EeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccC
Q 003423 98 RVKLFE-LNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (821)
Q Consensus 98 ~v~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~ 176 (821)
.|.|+. ++... ...++- +..+..+- .|.+|+..+. +.|.+||+.+++.+.++..+
T Consensus 90 ~I~I~kn~~~~~----------------~k~i~~-~~~~~~If------~G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~ 145 (443)
T PF04053_consen 90 TIKIYKNFKNEV----------------VKSIKL-PFSVEKIF------GGNLLGVKSS-DFICFYDWETGKLIRRIDVS 145 (443)
T ss_dssp -EEEEETTEE-T----------------T------SS-EEEEE-------SSSEEEEET-TEEEEE-TTT--EEEEESS-
T ss_pred eEEEEEcCcccc----------------ceEEcC-CcccceEE------cCcEEEEECC-CCEEEEEhhHcceeeEEecC
Confidence 899963 32211 011110 01122221 3667776654 48999999999999999877
Q ss_pred c-ceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecC
Q 003423 177 E-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (821)
Q Consensus 177 ~-~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 255 (821)
. +.+.|+ +++.++|-.+. ..+.|++........ .+.+ + -...+..+..-
T Consensus 146 ~vk~V~Ws-------~~g~~val~t~-~~i~il~~~~~~~~~----------~~~~----------g--~e~~f~~~~E~ 195 (443)
T PF04053_consen 146 AVKYVIWS-------DDGELVALVTK-DSIYILKYNLEAVAA----------IPEE----------G--VEDAFELIHEI 195 (443)
T ss_dssp E-EEEEE--------TTSSEEEEE-S--SEEEEEE-HHHHHH----------BTTT----------B---GGGEEEEEEE
T ss_pred CCcEEEEE-------CCCCEEEEEeC-CeEEEEEecchhccc----------cccc----------C--chhceEEEEEe
Confidence 4 666665 77888888864 577787765110000 0000 0 00123333333
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEEEEEeCCCeEEEE
Q 003423 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVW 333 (821)
Q Consensus 256 ~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l~s~~~dg~i~iw 333 (821)
...|.+.+|..+ -++.|. .. .++- +-.+.. ..+..-..+++=+.+.+ +.++....|+.+..+
T Consensus 196 ~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~-----------~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 196 SERIKSGCWVED-CFIYTT-SN-HLKY--LVNGET-----------GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp -S--SEEEEETT-EEEEE--TT-EEEE--EETTEE-----------EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred cceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCc-----------ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEE
Confidence 567888888765 333433 33 6665 333332 23333344555555655 778878888888777
Q ss_pred cCC
Q 003423 334 GSD 336 (821)
Q Consensus 334 d~~ 336 (821)
.++
T Consensus 260 ~ld 262 (443)
T PF04053_consen 260 ELD 262 (443)
T ss_dssp E--
T ss_pred EEC
Confidence 664
No 352
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.54 Score=45.79 Aligned_cols=190 Identities=10% Similarity=0.035 Sum_probs=115.9
Q ss_pred ccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEE
Q 003423 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIV 207 (821)
Q Consensus 128 ~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~v 207 (821)
+.|-...+.++.|+| +.+.|.+......-.||=..+|+.+.++.-..-.-.-++.+ ..+++++++--+++.+.+
T Consensus 81 i~g~~~nvS~LTynp---~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Iey---ig~n~fvi~dER~~~l~~ 154 (316)
T COG3204 81 ILGETANVSSLTYNP---DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEY---IGGNQFVIVDERDRALYL 154 (316)
T ss_pred cccccccccceeeCC---CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEE---ecCCEEEEEehhcceEEE
Confidence 345555699999999 88888888878888888778888888765221111111222 257788888888999999
Q ss_pred EEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeccc
Q 003423 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (821)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~ 287 (821)
+.+....... .+ ....-.+.....-....-+++|.|..+.|..+-.-.-++|+.+..
T Consensus 155 ~~vd~~t~~~--------------------~~---~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 155 FTVDADTTVI--------------------SA---KVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred EEEcCCccEE--------------------ec---cceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 8887110000 00 000111111112255678899999988888888878888888774
Q ss_pred CcccCCCCceee-ec-eEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcCCCceeeEeecccC
Q 003423 288 EYWKDSDSIEEV-GS-SVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG 348 (821)
Q Consensus 288 ~~~~~~~~~~~~-~~-~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~ 348 (821)
.... ...... .+ ....-.-..|.++.|+ +..++-+.+++.+.-.|.+|..+..+..+.+
T Consensus 212 ~~~~--l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g 275 (316)
T COG3204 212 SPSS--LSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKG 275 (316)
T ss_pred CCcc--cccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccC
Confidence 3310 000000 00 0000112345667777 5788888899999999998887766655443
No 353
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.38 E-value=1.3 Score=44.74 Aligned_cols=275 Identities=14% Similarity=0.156 Sum_probs=128.5
Q ss_pred CCcceeeccceeeeeeE-----EEEEeccCCCCCCcceEEe----------ec-CCeEEEEECCCCeeeeEEEeeccccE
Q 003423 5 DLSEWRLDVGQYLGEIS-----ALCFVHLPSHLSSLPFLLA----------GS-GSQVLLYDLEAGTLIRPFQVFHGIRL 68 (821)
Q Consensus 5 ~i~~w~~~~~~~~~~Vt-----~l~~~~~p~~~~~~~~l~~----------g~-~~~i~iwd~~t~~~~~~~~~~~~~~i 68 (821)
++.+.|..+++.+|-|. .+..+ || ++.+.+ |. ...|.+||.+|-++...+..+...+.
T Consensus 18 rv~viD~d~~k~lGmi~~g~~~~~~~s--pd----gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGFLGNVALS--PD----GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEETTTTEEEEEEEEESSEEEEE---TT----SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred eEEEEECCCCcEEEEeecccCCceeEC--CC----CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 57788888888777765 45677 88 444443 22 25899999999999888876543122
Q ss_pred EeEEeccccCCCCCCccceeeEEEEE-cCCeEEEEEEeecCCCCCCCCCcccc---ccceeeeccCCCCcEEEEEEeecC
Q 003423 69 HGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCV---NLSLVQSLPRLSHWVFDVCFLKVC 144 (821)
Q Consensus 69 ~~i~~~~~~~~~~~~~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~I~~~~~~~~~ 144 (821)
.... .+ ..+..+ .++.+.++|+....+- .-+ ..+.+..+. -.+ |.-..|.
T Consensus 92 ~~~~-~~-------------~~~~ls~dgk~~~V~N~TPa~SV-------tVVDl~~~kvv~ei~-~PG---C~~iyP~- 145 (342)
T PF06433_consen 92 QVVP-YK-------------NMFALSADGKFLYVQNFTPATSV-------TVVDLAAKKVVGEID-TPG---CWLIYPS- 145 (342)
T ss_dssp -BS---G-------------GGEEE-TTSSEEEEEEESSSEEE-------EEEETTTTEEEEEEE-GTS---EEEEEEE-
T ss_pred eecc-cc-------------cceEEccCCcEEEEEccCCCCeE-------EEEECCCCceeeeec-CCC---EEEEEec-
Confidence 2111 11 122222 3455555655432100 000 011122211 111 1222342
Q ss_pred CCCCEEEEEECCCcEEEEEcc-CCceeEEE---ccCcceeEE-EEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCC
Q 003423 145 NGNRSLAIGCSDNSIRVWDIS-NSSIILEV---HSPERCLLY-SMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLL 219 (821)
Q Consensus 145 ~~~~~l~t~~~d~~i~iwd~~-~~~~~~~~---~~~~~~~~~-s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 219 (821)
..+-+.+-|.||.+.-..+. .|+...+. .......++ ...+ ...+..++--+..|.|+--|+......+
T Consensus 146 -~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~---~~~~~~~~F~Sy~G~v~~~dlsg~~~~~-- 219 (342)
T PF06433_consen 146 -GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAY---SRDGGRLYFVSYEGNVYSADLSGDSAKF-- 219 (342)
T ss_dssp -ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EE---ETTTTEEEEEBTTSEEEEEEETTSSEEE--
T ss_pred -CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccce---ECCCCeEEEEecCCEEEEEeccCCcccc--
Confidence 12346677889999998887 45554221 122222121 1111 1223334435677888887776221000
Q ss_pred CCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEe--------CCC--eEEEEecccCc
Q 003423 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS--------DDR--SARIWEVRAEY 289 (821)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s--------~Dg--~i~iwd~~~~~ 289 (821)
...|.+.... ....-. -.+.-.-+++++..++|..-- .|+ .|.++|+.+++
T Consensus 220 --------------~~~~~~~t~~-e~~~~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k 280 (342)
T PF06433_consen 220 --------------GKPWSLLTDA-EKADGW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK 280 (342)
T ss_dssp --------------EEEEESS-HH-HHHTTE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE
T ss_pred --------------cCcccccCcc-ccccCc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe
Confidence 0001100000 000000 001122356665554443321 122 46666777765
Q ss_pred ccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEE-eCCCeEEEEcC-CCceeeEeeccc
Q 003423 290 WKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITA-GEDCTCRVWGS-DGKQLKMIKEHI 347 (821)
Q Consensus 290 ~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~-~~dg~i~iwd~-~~~~~~~~~~h~ 347 (821)
. +. .+. -..++.++..+ ..+|++. ..++.+.+||. +|+.++++..-.
T Consensus 281 r-----v~-----Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 281 R-----VA-----RIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp E-----EE-----EEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred E-----EE-----EEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 5 32 222 23457788887 2466654 56899999999 898888877543
No 354
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.22 E-value=0.0017 Score=68.53 Aligned_cols=203 Identities=15% Similarity=0.193 Sum_probs=118.5
Q ss_pred cEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCcee-EEEccCcceeEEEEeeccCCccCeEEEEEee----CCEEEEE
Q 003423 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-LEVHSPERCLLYSMKLWGDNLEALRIASGTI----YNEIIVW 208 (821)
Q Consensus 134 ~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~----dg~i~vw 208 (821)
-+.|++..- +.+...+++|..+|.|.+-.+....-- .+...+......++++. +.|.+.||+|-. |-.+.||
T Consensus 58 y~kcva~~y-~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwn--eLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 58 YVKCVASFY-GNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWN--ELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred Cceeehhhc-CCchhhhhhccccCceEEeecCCcccccceecccccccccccccc--cccHHHHHhhhhhhcccCCccce
Confidence 466777664 113457889999999998877654322 33333333334444442 346778888743 5678999
Q ss_pred EcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccC
Q 003423 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (821)
Q Consensus 209 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~ 288 (821)
|+...-..|- ....+.. +-.....+++|..+.+++.+|...+.+.++|++..
T Consensus 135 di~s~ltvPk--------------------------e~~~fs~--~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs 186 (783)
T KOG1008|consen 135 DINSLLTVPK--------------------------ESPLFSS--STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS 186 (783)
T ss_pred ecccccCCCc--------------------------ccccccc--ccccCccccccccCcchhhcccccchhhhhhhhhh
Confidence 9882211110 0011111 12334558899888899999999999999999843
Q ss_pred cccCCCCceeeeceEEeccceeEEEEE---EcCCEEEEEeCCCeEEEEcC-C--CceeeEeecccC---CCeEEEEEecC
Q 003423 289 YWKDSDSIEEVGSSVLYGHNARVWDCC---LTDSFIITAGEDCTCRVWGS-D--GKQLKMIKEHIG---RGIWRCLYDSL 359 (821)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~h~~~i~~v~---~~~~~l~s~~~dg~i~iwd~-~--~~~~~~~~~h~~---~~i~~l~~~~~ 359 (821)
.. ....-.+..+..+. |.++++++-. ||.+.+||. . .+++..+..... +.+..++|+|.
T Consensus 187 ~~-----------~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt 254 (783)
T KOG1008|consen 187 LD-----------SVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT 254 (783)
T ss_pred hh-----------hhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC
Confidence 22 01111122233333 3467877766 999999994 1 222222221111 24889999996
Q ss_pred CC-EEEEEe-CCCcEEEEEcCC
Q 003423 360 SS-LLVTAG-FDSAIKVHQFQA 379 (821)
Q Consensus 360 ~~-~l~tg~-~dg~I~iwd~~~ 379 (821)
.. ++++.. ..++|+++++..
T Consensus 255 rtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 255 RTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CcchhhhhccCcceEEEecccc
Confidence 53 344444 457899999843
No 355
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.20 E-value=0.012 Score=40.08 Aligned_cols=32 Identities=16% Similarity=0.391 Sum_probs=29.3
Q ss_pred cCceEEEEEeecCCCEEEEEcCCCcEEEEecC
Q 003423 579 FGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (821)
Q Consensus 579 h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~ 610 (821)
....|.+++|||...+||.|+.+|.|.+|+++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 35669999999999999999999999999985
No 356
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.16 E-value=1.7 Score=43.88 Aligned_cols=251 Identities=15% Similarity=0.162 Sum_probs=121.8
Q ss_pred cceEEeec-CCeEEEEECCC-CeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCC
Q 003423 35 LPFLLAGS-GSQVLLYDLEA-GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNS 112 (821)
Q Consensus 35 ~~~l~~g~-~~~i~iwd~~t-~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~ 112 (821)
++.|+.|. +| |.+|+... .+.....+ ..+|..+...++. ..+++-.|+.+.++++..-.....
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~---~~~I~ql~vl~~~-----------~~llvLsd~~l~~~~L~~l~~~~~ 71 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK---LSSITQLSVLPEL-----------NLLLVLSDGQLYVYDLDSLEPVST 71 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEee---cceEEEEEEeccc-----------CEEEEEcCCccEEEEchhhccccc
Confidence 34555555 66 99999933 33333332 2238888888652 355565679999999874321110
Q ss_pred CCCCcccccc-ceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCC-----ceeEEEccCcceeEEEEee
Q 003423 113 QYQPETCVNL-SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-----SIILEVHSPERCLLYSMKL 186 (821)
Q Consensus 113 ~~~~~~~~~~-~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~s~~~ 186 (821)
.. +...... .....+. ....+...+..........|+++. .+.|.+|..... ...+++.-+.. +.++.+
T Consensus 72 ~~-~~~~~~~~~~~~~~~-~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~--~~~i~~ 146 (275)
T PF00780_consen 72 SA-PLAFPKSRSLPTKLP-ETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDP--PSSIAF 146 (275)
T ss_pred cc-ccccccccccccccc-ccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCC--cEEEEE
Confidence 00 0000000 0000111 122333343111111344556555 558999888753 35566665543 445555
Q ss_pred ccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcC
Q 003423 187 WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS 266 (821)
Q Consensus 187 ~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 266 (821)
. +..++.|.. +...+.|+.+....+..+ ..+ .............++..+...
T Consensus 147 ~-----~~~i~v~~~-~~f~~idl~~~~~~~l~~------------------~~~---~~~~~~~~~~~~~~~~~~~~~- 198 (275)
T PF00780_consen 147 L-----GNKICVGTS-KGFYLIDLNTGSPSELLD------------------PSD---SSSSFKSRNSSSKPLGIFQLS- 198 (275)
T ss_pred e-----CCEEEEEeC-CceEEEecCCCCceEEeC------------------ccC---CcchhhhcccCCCceEEEEeC-
Confidence 2 445666654 446777777221110000 000 000000111122233334433
Q ss_pred CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcC-CCceeeEeec
Q 003423 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (821)
Q Consensus 267 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~ 345 (821)
++.+|++. |..-.+-|.... . .+. ..+.- .....++++...+++..+.+ .|.+|++ +++.++++..
T Consensus 199 ~~e~Ll~~--~~~g~fv~~~G~-~-----~r~---~~i~W-~~~p~~~~~~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 199 DNEFLLCY--DNIGVFVNKNGE-P-----SRK---STIQW-SSAPQSVAYSSPYLIAFSSN-SIEVRSLETGELVQTIPL 265 (275)
T ss_pred CceEEEEe--cceEEEEcCCCC-c-----Ccc---cEEEc-CCchhEEEEECCEEEEECCC-EEEEEECcCCcEEEEEEC
Confidence 45566643 333334444332 2 110 12222 23556777777788887775 4999999 7888888775
Q ss_pred c
Q 003423 346 H 346 (821)
Q Consensus 346 h 346 (821)
.
T Consensus 266 ~ 266 (275)
T PF00780_consen 266 P 266 (275)
T ss_pred C
Confidence 4
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.036 Score=58.91 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=57.0
Q ss_pred CccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEE-EEEEcCCC
Q 003423 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF-RIEWSSCG 268 (821)
Q Consensus 190 s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~-~l~~s~~~ 268 (821)
+|.-.++|.++.+|+|.+..+. .+.+.++.-|...++ +++|.|||
T Consensus 29 nP~~dLiA~~t~~gelli~R~n----------------------------------~qRlwtip~p~~~v~~sL~W~~DG 74 (665)
T KOG4640|consen 29 NPKMDLIATRTEKGELLIHRLN----------------------------------WQRLWTIPIPGENVTASLCWRPDG 74 (665)
T ss_pred cCccchhheeccCCcEEEEEec----------------------------------cceeEeccCCCCccceeeeecCCC
Confidence 4778899999999999999876 244566665666666 99999999
Q ss_pred CEEEEEeCCCeEEEEecccCcc
Q 003423 269 SKLVSVSDDRSARIWEVRAEYW 290 (821)
Q Consensus 269 ~~l~s~s~Dg~i~iwd~~~~~~ 290 (821)
+.||.|-.||+|++-|+.++..
T Consensus 75 kllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 75 KLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred CEEEEEecCCeEEEEEccCCCc
Confidence 9999999999999999998765
No 358
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.77 E-value=2.2 Score=41.82 Aligned_cols=166 Identities=9% Similarity=0.063 Sum_probs=88.5
Q ss_pred eeeEEEEEeccCCCCCCcceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc-
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG- 95 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g- 95 (821)
..+..|++. |+ ++.++++.. .+.|..++. +|++++++........-+|.+...+ .++++..
T Consensus 22 ~e~SGLTy~--pd---~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~-----------~~vl~~Er 84 (248)
T PF06977_consen 22 DELSGLTYN--PD---TGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG-----------RYVLSEER 84 (248)
T ss_dssp S-EEEEEEE--TT---TTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT-----------EEEEEETT
T ss_pred CCccccEEc--CC---CCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC-----------EEEEEEcC
Confidence 459999999 98 344444444 589999996 5899988875333346777776432 3444443
Q ss_pred CCeEEEEEEeecCCCCCCCCCccccccceee-ec-cCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccC---Ccee
Q 003423 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQ-SL-PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN---SSII 170 (821)
Q Consensus 96 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~---~~~~ 170 (821)
.+.+.++++........ ....+... .+ ..++..+-.++|.| .++.|.++-...-.+++.+.. ...+
T Consensus 85 ~~~L~~~~~~~~~~~~~------~~~~~~~~l~~~~~~N~G~EGla~D~---~~~~L~v~kE~~P~~l~~~~~~~~~~~~ 155 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLD------RADVQKISLGFPNKGNKGFEGLAYDP---KTNRLFVAKERKPKRLYEVNGFPGGFDL 155 (248)
T ss_dssp TTEEEEEEE----TT--------EEEEEEEE---S---SS--EEEEEET---TTTEEEEEEESSSEEEEEEESTT-SS--
T ss_pred CCcEEEEEEeccccccc------hhhceEEecccccCCCcceEEEEEcC---CCCEEEEEeCCCChhhEEEccccCccce
Confidence 68888888854320000 00001111 11 23456689999999 777777777777778887764 2222
Q ss_pred EEE--cc-----CcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 171 LEV--HS-----PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 171 ~~~--~~-----~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
... .. ....-+-++.+++ ..+.+++-......|...|..
T Consensus 156 ~~~~~~~~~~~~~~~~d~S~l~~~p--~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 156 FVSDDQDLDDDKLFVRDLSGLSYDP--RTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp EEEE-HHHH-HT--SS---EEEEET--TTTEEEEEETTTTEEEEE-TT
T ss_pred eeccccccccccceeccccceEEcC--CCCeEEEEECCCCeEEEECCC
Confidence 111 10 0111234455543 456777778888999999865
No 359
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.70 E-value=3.4 Score=43.54 Aligned_cols=101 Identities=11% Similarity=0.012 Sum_probs=55.8
Q ss_pred cCCCCEEEEE---------eCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEE
Q 003423 265 SSCGSKLVSV---------SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVW 333 (821)
Q Consensus 265 s~~~~~l~s~---------s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iw 333 (821)
|||+++++.. +..+.+.++|+.+++. ..+......+....|+ ++.++-. .++.|.++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~-----------~~l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~ 68 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI-----------TPLTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLR 68 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE-----------EESS-EETTBSEEEE-SSSTEEEEE-ETTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce-----------EECcCCccccccceeecCCCeeEEE-ecCceEEE
Confidence 5777766553 2236788999998754 1222224556677787 3454444 57889999
Q ss_pred cCCCceeeEeecccC-----------------CCeEEEEEecCCCEEEEEe-CCCcEEEEEc
Q 003423 334 GSDGKQLKMIKEHIG-----------------RGIWRCLYDSLSSLLVTAG-FDSAIKVHQF 377 (821)
Q Consensus 334 d~~~~~~~~~~~h~~-----------------~~i~~l~~~~~~~~l~tg~-~dg~I~iwd~ 377 (821)
+..+.....+..... ..-..+-|+||+++|+... .+..|+.+.+
T Consensus 69 ~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 69 DLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp SSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred ECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence 873333332221110 0124578999999888765 4456666655
No 360
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.53 E-value=2.6 Score=41.11 Aligned_cols=131 Identities=13% Similarity=0.132 Sum_probs=77.9
Q ss_pred CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccc
Q 003423 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLS 123 (821)
Q Consensus 44 ~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~ 123 (821)
..|+.+|+.+|+.+.+.......---||....+ ....++|.++...+||..+ ++
T Consensus 68 S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-----------~l~qLTWk~~~~f~yd~~t---------------l~ 121 (264)
T PF05096_consen 68 SSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-----------KLYQLTWKEGTGFVYDPNT---------------LK 121 (264)
T ss_dssp EEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-----------EEEEEESSSSEEEEEETTT---------------TE
T ss_pred EEEEEEECCCCcEEEEEECCccccceeEEEECC-----------EEEEEEecCCeEEEEcccc---------------ce
Confidence 599999999999988887655544445666533 4788889999999999763 33
Q ss_pred eeeeccC-CCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcce----eEEEEeeccCCccCeEEEE
Q 003423 124 LVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERC----LLYSMKLWGDNLEALRIAS 198 (821)
Q Consensus 124 ~~~~~~~-h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~s~~~~~~s~~~~~l~s 198 (821)
.+.++.- ..+| .++ . +++.|+.......+.++|..+.+...++...... .+.-+.+ -++.+.|-
T Consensus 122 ~~~~~~y~~EGW--GLt--~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~----i~G~IyAN 190 (264)
T PF05096_consen 122 KIGTFPYPGEGW--GLT--S---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY----INGKIYAN 190 (264)
T ss_dssp EEEEEE-SSS----EEE--E---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE----ETTEEEEE
T ss_pred EEEEEecCCcce--EEE--c---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE----EcCEEEEE
Confidence 4444322 1344 343 3 7777887776778999998887776665432211 1223333 24555555
Q ss_pred EeeCCEEEEEEcc
Q 003423 199 GTIYNEIIVWKVD 211 (821)
Q Consensus 199 g~~dg~i~vwd~~ 211 (821)
--....|..-|..
T Consensus 191 VW~td~I~~Idp~ 203 (264)
T PF05096_consen 191 VWQTDRIVRIDPE 203 (264)
T ss_dssp ETTSSEEEEEETT
T ss_pred eCCCCeEEEEeCC
Confidence 5455556666655
No 361
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.51 E-value=3.8 Score=42.84 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=65.8
Q ss_pred CcEEEEEEeecCCCCCEEEEEE--------------------CCCcEEEEEccCCceeEEEccCc-ceeEEEEeeccCCc
Q 003423 133 HWVFDVCFLKVCNGNRSLAIGC--------------------SDNSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNL 191 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~~--------------------~d~~i~iwd~~~~~~~~~~~~~~-~~~~~s~~~~~~s~ 191 (821)
.--+++-+.| ..+.++|.. .-+++.+||+.+.+.++++.-.. ..+...++|... |
T Consensus 181 ~~gYDfw~qp---r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~-P 256 (461)
T PF05694_consen 181 PFGYDFWYQP---RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHD-P 256 (461)
T ss_dssp -----EEEET---TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SS-T
T ss_pred CCCCCeEEcC---CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCC-C
Confidence 3456677777 777777652 14689999999999999988654 345667777655 4
Q ss_pred cCeEEEEE-eeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEec----------------
Q 003423 192 EALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG---------------- 254 (821)
Q Consensus 192 ~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 254 (821)
+...-++| ....+|..|--.. ++.+..+.+..+..
T Consensus 257 ~~~~gFvg~aLss~i~~~~k~~----------------------------~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~ 308 (461)
T PF05694_consen 257 DANYGFVGCALSSSIWRFYKDD----------------------------DGEWAAEKVIDIPAKKVEGWILPEMLKPFG 308 (461)
T ss_dssp T--EEEEEEE--EEEEEEEE-E----------------------------TTEEEEEEEEEE--EE--SS---GGGGGG-
T ss_pred CccceEEEEeccceEEEEEEcC----------------------------CCCeeeeEEEECCCcccCcccccccccccc
Confidence 44443333 3445555554320 01112222222211
Q ss_pred -CCCcEEEEEEcCCCCEE-EEEeCCCeEEEEecccCcc
Q 003423 255 -HEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAEYW 290 (821)
Q Consensus 255 -h~~~I~~l~~s~~~~~l-~s~s~Dg~i~iwd~~~~~~ 290 (821)
-..-|+.|..|.|.++| +++-.+|.||.||+.+...
T Consensus 309 ~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 309 AVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred cCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 13458999999999987 6677899999999998765
No 362
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.63 Score=48.90 Aligned_cols=122 Identities=9% Similarity=0.007 Sum_probs=82.4
Q ss_pred ceeeEEEEecCCCcEEEEEEcCCCC--E-----EEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccc----eeEEE
Q 003423 245 TAVNLFRLVGHEGSIFRIEWSSCGS--K-----LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN----ARVWD 313 (821)
Q Consensus 245 ~~~~~~~~~~h~~~I~~l~~s~~~~--~-----l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~----~~i~~ 313 (821)
.++.+.+.+-|.. |+-+.+.|+.+ . =+.|-+|..|.-||.+-... . .+ ....+|+ ....|
T Consensus 365 ~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-----~-kl--~~~q~kqy~~k~nFsc 435 (644)
T KOG2395|consen 365 RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-----N-KL--AVVQSKQYSTKNNFSC 435 (644)
T ss_pred cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-----c-ee--eeeeccccccccccce
Confidence 5666777766666 77777888653 2 23466778899999885433 1 11 2333332 23445
Q ss_pred EEEc-CCEEEEEeCCCeEEEEcCCCceeeE-eecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 314 CCLT-DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 314 v~~~-~~~l~s~~~dg~i~iwd~~~~~~~~-~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
.+-. +.+++.|+.+|.||+||-.+...++ +.+.. .+|..+..+.+|++|+..+ +..+.+.+.
T Consensus 436 ~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG-~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 436 FATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLG-DAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eeecCCceEEEeecCCcEEeehhhhhhhhhcccccC-CceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 5544 6899999999999999986555555 44444 4799999999999887766 456777776
No 363
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=0.15 Score=57.85 Aligned_cols=99 Identities=18% Similarity=0.282 Sum_probs=67.7
Q ss_pred EEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce
Q 003423 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (821)
Q Consensus 90 ~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~ 169 (821)
++++...+.+-..|+... +.+.+.=..-..+|++++|+. +|..++.|-.+|.|.+||+.+++.
T Consensus 102 ivi~Ts~ghvl~~d~~~n--------------L~~~~~ne~v~~~Vtsvafn~---dg~~l~~G~~~G~V~v~D~~~~k~ 164 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGN--------------LGPLHQNERVQGPVTSVAFNQ---DGSLLLAGLGDGHVTVWDMHRAKI 164 (1206)
T ss_pred EEEEcCchhhhhhhhhcc--------------cchhhcCCccCCcceeeEecC---CCceeccccCCCcEEEEEccCCcc
Confidence 344444577777666532 122222233457899999999 999999999999999999999888
Q ss_pred eEEEc---cCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 170 ILEVH---SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 170 ~~~~~---~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
++.+. .++..++..... .++..+.++..-|. +|++.
T Consensus 165 l~~i~e~~ap~t~vi~v~~t----~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 165 LKVITEHGAPVTGVIFVGRT----SQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eeeeeecCCccceEEEEEEe----CCCcEEEEccCCCc--eEEEE
Confidence 76654 445555555444 34447888877776 67665
No 364
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.28 E-value=3.8 Score=41.40 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=77.1
Q ss_pred CCeEEEEecCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCc
Q 003423 430 EDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQ 509 (821)
Q Consensus 430 ~~~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~ 509 (821)
+..++++|++| ++.+.+.+ ...+.++... .++..+.+.+.. +.+++-+ |+.++++++..-.....
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~--~~~~~~i~~~---~~I~ql~vl~~~--------~~llvLs-d~~l~~~~L~~l~~~~~ 71 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSD--PSKPTRILKL---SSITQLSVLPEL--------NLLLVLS-DGQLYVYDLDSLEPVST 71 (275)
T ss_pred CCEEEEEECCC-EEEEEecC--CccceeEeec---ceEEEEEEeccc--------CEEEEEc-CCccEEEEchhhccccc
Confidence 55788888888 77666622 2223333332 236666665532 4433333 48999999876443221
Q ss_pred ce-eEEe-----eccCccceeeeeEE-eec-CCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCc
Q 003423 510 LS-FTFT-----WSAGIERQLLGTYW-CKS-LGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGA 581 (821)
Q Consensus 510 ~~-~~~~-----~~~~~~~~~~~~~~-~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 581 (821)
.. .... ...-...+-...+. ... .....|+++ ...+|.+|.+........ ...+++ .-..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~---------~~~ke~--~lp~ 139 (275)
T PF00780_consen 72 SAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFS---------KLLKEI--SLPD 139 (275)
T ss_pred cccccccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCccccc---------ceeEEE--EcCC
Confidence 10 0000 00000000111111 011 233455544 444899998876421110 222333 2246
Q ss_pred eEEEEEeecCCCEEEEEcCCCcEEEEecCc
Q 003423 582 RIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 582 ~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~ 611 (821)
.+.+++|. ++.|+.|..+ ...+.|+.+
T Consensus 140 ~~~~i~~~--~~~i~v~~~~-~f~~idl~~ 166 (275)
T PF00780_consen 140 PPSSIAFL--GNKICVGTSK-GFYLIDLNT 166 (275)
T ss_pred CcEEEEEe--CCEEEEEeCC-ceEEEecCC
Confidence 68899998 6688888765 478888874
No 365
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.02 E-value=3.3 Score=42.18 Aligned_cols=113 Identities=12% Similarity=-0.022 Sum_probs=66.5
Q ss_pred EEEEecCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEeccc--CcccCCCCceeeeceEEeccceeEEEEEEc-CCEEE-E
Q 003423 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRA--EYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFII-T 323 (821)
Q Consensus 249 ~~~~~~h~~~I~~l~~s~~~~~l~s~s~-Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~-s 323 (821)
...+..|-..-++|+||||++.|..+.. .+.|.-+++.. ... .............+..-.++.. +..+. +
T Consensus 155 ~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~-----~~~~~~~~~~~~~G~PDG~~vDadG~lw~~ 229 (307)
T COG3386 155 VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPI-----GGRRGFVDFDEEPGLPDGMAVDADGNLWVA 229 (307)
T ss_pred EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCcc-----CCcceEEEccCCCCCCCceEEeCCCCEEEe
Confidence 3333445555678999999987765544 47777777763 111 0000001121223444445554 34444 4
Q ss_pred EeCCC-eEEEEcCCCceeeEeecccCCCeEEEEEe-cCCCEEEEEe
Q 003423 324 AGEDC-TCRVWGSDGKQLKMIKEHIGRGIWRCLYD-SLSSLLVTAG 367 (821)
Q Consensus 324 ~~~dg-~i~iwd~~~~~~~~~~~h~~~~i~~l~~~-~~~~~l~tg~ 367 (821)
+..+| .|..|+.+|+.+..+..+.. .+++++|- ++.+.|+..+
T Consensus 230 a~~~g~~v~~~~pdG~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 230 AVWGGGRVVRFNPDGKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred cccCCceEEEECCCCcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 44443 89999999999999988865 58888884 4455554444
No 366
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.90 E-value=0.025 Score=60.03 Aligned_cols=115 Identities=10% Similarity=0.068 Sum_probs=78.2
Q ss_pred CcEEEEEEcCCC--CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC---CEEEEEe----CC
Q 003423 257 GSIFRIEWSSCG--SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAG----ED 327 (821)
Q Consensus 257 ~~I~~l~~s~~~--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~---~~l~s~~----~d 327 (821)
..+.|+++.-+. ..++.|..+|.|-+-.++.... .. .....+|..+.++++|.+ +.|+.|- .|
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-----Ss---~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnd 128 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-----SS---AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRND 128 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccc-----cc---ceecccccccccccccccccHHHHHhhhhhhccc
Confidence 345666665543 4688899999999988877543 10 036677888899999983 4455442 45
Q ss_pred CeEEEEcCC-C----ceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 328 CTCRVWGSD-G----KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 328 g~i~iwd~~-~----~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
..+.+||+. + +....+.+.......+++|..+.+++.+|.....++++|++.
T Consensus 129 s~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq 185 (783)
T KOG1008|consen 129 SSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ 185 (783)
T ss_pred CCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhh
Confidence 689999983 2 122223321222456888888889999999999999999864
No 367
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.84 E-value=6.9 Score=42.05 Aligned_cols=50 Identities=22% Similarity=0.243 Sum_probs=37.2
Q ss_pred eEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEEEcCCCce
Q 003423 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQ 339 (821)
Q Consensus 279 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~~~~~ 339 (821)
.|+||+...... ....-..++|.++.|. ...|+.-..||.++++|+.|+.
T Consensus 62 ~I~iys~sG~ll-----------~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSSGKLL-----------SSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCCCCEe-----------EEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce
Confidence 588888776433 1222222789999998 6788889999999999997766
No 368
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=0.14 Score=58.22 Aligned_cols=103 Identities=14% Similarity=0.236 Sum_probs=69.8
Q ss_pred eEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCccccc
Q 003423 536 RFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLN 615 (821)
Q Consensus 536 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~ 615 (821)
..++.|+..|.+...|+..... ++.. ...-+.+|++++|+.+|++++.|-.+|.|.+||+.+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~------------~~~~--ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~---- 161 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLG------------PLHQ--NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR---- 161 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccc------------hhhc--CCccCCcceeeEecCCCceeccccCCCcEEEEEccC----
Confidence 5688888999999988876421 0000 123467899999999999999999999999999884
Q ss_pred ccccccccccCcccccccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEe
Q 003423 616 DKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (821)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~ 669 (821)
.+++..+. -|+. +++++-+.-.......++|+.+-|. +|++
T Consensus 162 ---------~k~l~~i~-e~~a-p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 162 ---------AKILKVIT-EHGA-PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ---------Ccceeeee-ecCC-ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 23344331 3322 4444444333234457999988887 6666
No 369
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.81 E-value=8.5 Score=42.92 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=25.3
Q ss_pred cCCEEEEEeCCCeEEEEcC-CCceeeEeeccc
Q 003423 317 TDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (821)
Q Consensus 317 ~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~ 347 (821)
.+..++.+..||.++.+|. +|+.+-.++...
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 3567788888999999999 899888877653
No 370
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.68 E-value=0.11 Score=35.51 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=29.1
Q ss_pred CCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc
Q 003423 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 132 ~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
...|.+++|+| ..++||.|..+|.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P---~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCP---TMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECC---CCCEEEEEECCCeEEEEEC-CCc
Confidence 35699999999 9999999999999999998 444
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.61 E-value=3.2 Score=46.69 Aligned_cols=109 Identities=10% Similarity=0.110 Sum_probs=62.3
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEE---ecccCcccCCCCceeeeceEE-eccceeEEEEEEc-CCEEEEEeCCCe
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIW---EVRAEYWKDSDSIEEVGSSVL-YGHNARVWDCCLT-DSFIITAGEDCT 329 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~i~iw---d~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~v~~~-~~~l~s~~~dg~ 329 (821)
..+.|..+.|||||.+++... ++.|.+= ....+.. ....+..+ .+-...+.++.|. +..|+.+..++.
T Consensus 446 ~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~------~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~ 518 (591)
T PRK13616 446 VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQY------ALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPE 518 (591)
T ss_pred cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCce------eecccEEeecccCCccccceEecCCEEEEEecCCC
Confidence 356799999999999887665 4777663 3222221 11111112 2233345778887 555667766666
Q ss_pred EEEEcC--CCceeeEeecc--cCCCeEEEEEecCCCEEEEEeCCCcEE
Q 003423 330 CRVWGS--DGKQLKMIKEH--IGRGIWRCLYDSLSSLLVTAGFDSAIK 373 (821)
Q Consensus 330 i~iwd~--~~~~~~~~~~h--~~~~i~~l~~~~~~~~l~tg~~dg~I~ 373 (821)
-.+|.+ +|.....+... .. ++.+++-++ ..++....+|.+.
T Consensus 519 ~~v~~v~vDG~~~~~~~~~n~~~-~v~~vaa~~--~~iyv~~~~g~~~ 563 (591)
T PRK13616 519 HPVWYVNLDGSNSDALPSRNLSA-PVVAVAASP--STVYVTDARAVLQ 563 (591)
T ss_pred CceEEEecCCccccccCCCCccC-ceEEEecCC--ceEEEEcCCceEE
Confidence 666765 66554443321 33 467777665 3466666666443
No 372
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.52 E-value=7 Score=44.95 Aligned_cols=122 Identities=22% Similarity=0.244 Sum_probs=74.2
Q ss_pred ceEEeecCCeEEEEECCCCeeeeE-EEe--------------------eccccEEeEEeccccCCCCCCccceeeEEEEE
Q 003423 36 PFLLAGSGSQVLLYDLEAGTLIRP-FQV--------------------FHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (821)
Q Consensus 36 ~~l~~g~~~~i~iwd~~t~~~~~~-~~~--------------------~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~ 94 (821)
+-|++..|+.+.+||-....++.. ++. .....|+.|.+++++ ..++.+
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g-----------~~lal~ 102 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTG-----------SLLALV 102 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCC-----------CEEEEE
Confidence 567777788899999765433110 111 012346666666553 589999
Q ss_pred cCCeEEEEEEeecCCCCCCCCCc-cccccce-----eeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc
Q 003423 95 GEKRVKLFELNFELSPNSQYQPE-TCVNLSL-----VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 95 g~~~v~i~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
|...|.|..+...-.+...+... ..+..+. ......+...|..+.|+|.+.++..|++=..|+++|+||+....
T Consensus 103 G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 103 GPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred cCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 99999999886432212222111 1111111 11122345689999999966667788888889999999997543
No 373
>PHA02713 hypothetical protein; Provisional
Probab=94.46 E-value=2.7 Score=47.26 Aligned_cols=61 Identities=3% Similarity=0.103 Sum_probs=32.3
Q ss_pred EEcCCEEEEEeCC------CeEEEEcCCC--c--eeeEeecccCCCeEEEEEecCCCEEEEEeCCC--cEEEEEcC
Q 003423 315 CLTDSFIITAGED------CTCRVWGSDG--K--QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS--AIKVHQFQ 378 (821)
Q Consensus 315 ~~~~~~l~s~~~d------g~i~iwd~~~--~--~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg--~I~iwd~~ 378 (821)
.+.+...+.||.+ ..+..||.+. + .+..+..... ..+++. -++++.++||.|| .+..||..
T Consensus 461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~--~~~~~~-~~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS--ALHTIL-HDNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc--cceeEE-ECCEEEEEeeecceeehhhcCcc
Confidence 3345555666654 2456788743 2 2222322222 122222 2678889999888 55566653
No 374
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.41 E-value=0.11 Score=48.30 Aligned_cols=106 Identities=18% Similarity=0.136 Sum_probs=63.9
Q ss_pred CCCEEEEEECCCcEEEEEccCCcee-EEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCC
Q 003423 146 GNRSLAIGCSDNSIRVWDISNSSII-LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (821)
Q Consensus 146 ~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 224 (821)
-+..|++|+.+|.|.+|........ .........+..- .+...++.+..++..+|.|+.|+..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~---Ip~~~~~~~~c~~~~dg~ir~~n~~------------- 132 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG---IPNGRDSSLGCVGAQDGRIRACNIK------------- 132 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceec---cccccccceeEEeccCCceeeeccc-------------
Confidence 3457888999999999987622111 1111111111111 1223566789999999999999988
Q ss_pred cccCCCCCCcceeeecccccceeeEEEEecCC-CcEEEEEEcCCCCEEEEE--eCCCeEEEEeccc
Q 003423 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-GSIFRIEWSSCGSKLVSV--SDDRSARIWEVRA 287 (821)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~l~~s~~~~~l~s~--s~Dg~i~iwd~~~ 287 (821)
..+.+.....|+ .++..+..+..++.++.+ |.|..++.|++..
T Consensus 133 --------------------p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 133 --------------------PNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred --------------------cCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 344444445566 445555555555566666 6666667776654
No 375
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.31 E-value=8.7 Score=40.89 Aligned_cols=156 Identities=13% Similarity=0.146 Sum_probs=89.6
Q ss_pred ccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcC----
Q 003423 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS---- 266 (821)
Q Consensus 191 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~---- 266 (821)
.+...|++|+..|.++|++...++..+ . ..+.+ ..-+.+|..|..-+
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~---------------------------~-~lllE-~~l~~PILqv~~G~F~s~ 85 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQP---------------------------E-DLLLE-TQLKDPILQVECGKFVSG 85 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCC---------------------------c-cEEEE-EecCCcEEEEEeccccCC
Confidence 456789999999999999986221111 1 11111 12345676666532
Q ss_pred -CCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccce--eEEEEEEc-------CCEEEEEeCCCeEEEEcCC
Q 003423 267 -CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA--RVWDCCLT-------DSFIITAGEDCTCRVWGSD 336 (821)
Q Consensus 267 -~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~v~~~-------~~~l~s~~~dg~i~iwd~~ 336 (821)
+...||. ---+.+.+|.+....... .............|.- ..+.++.. ..++..-+.||.+.+++-+
T Consensus 86 ~~~~~LaV-LhP~kl~vY~v~~~~g~~-~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe 163 (418)
T PF14727_consen 86 SEDLQLAV-LHPRKLSVYSVSLVDGTV-EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE 163 (418)
T ss_pred CCcceEEE-ecCCEEEEEEEEecCCCc-ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC
Confidence 1223443 455788888874322100 0001111123333332 22333332 2688889999999999986
Q ss_pred CceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 337 GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 337 ~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
.-....+-...- -...+.|.+....+++++.+..+..|...
T Consensus 164 ~~~f~~~lp~~l-lPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 164 SFAFSRFLPDFL-LPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred cEEEEEEcCCCC-CCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 544333322221 13357888988999999999999999873
No 376
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.25 E-value=5.9 Score=38.77 Aligned_cols=184 Identities=11% Similarity=0.057 Sum_probs=97.8
Q ss_pred CcEEEEEEeecCCCCCEEEEEECCC--cEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEc
Q 003423 133 HWVFDVCFLKVCNGNRSLAIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~ 210 (821)
.....+.|.. ++.++-+.+.-| .|+.+|+.+++.+.+..-+.+-.--.+..+ ++.+..---.++...+||.
T Consensus 45 aFTQGL~~~~---~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~----~d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 45 AFTQGLEFLD---DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL----GDKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp -EEEEEEEEE---TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE----TTEEEEEESSSSEEEEEET
T ss_pred ccCccEEecC---CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE----CCEEEEEEecCCeEEEEcc
Confidence 3456677866 788777776655 799999999998877665544332233332 3334444456788899998
Q ss_pred ccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcc
Q 003423 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (821)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 290 (821)
. +.+.+.++. ..+.=++++. +++.|+.......+.++|..+.+.
T Consensus 118 ~---------------------------------tl~~~~~~~-y~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 118 N---------------------------------TLKKIGTFP-YPGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKE 161 (264)
T ss_dssp T---------------------------------TTEEEEEEE--SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred c---------------------------------cceEEEEEe-cCCcceEEEc--CCCEEEEECCccceEEECCcccce
Confidence 7 455555554 3345567773 566666665567899999877544
Q ss_pred cCCCCceeeeceEEeccce---eEEEEEEcCCEEEE-EeCCCeEEEEcC-CCceeeEeec------------c--cCCCe
Q 003423 291 KDSDSIEEVGSSVLYGHNA---RVWDCCLTDSFIIT-AGEDCTCRVWGS-DGKQLKMIKE------------H--IGRGI 351 (821)
Q Consensus 291 ~~~~~~~~~~~~~~~~h~~---~i~~v~~~~~~l~s-~~~dg~i~iwd~-~~~~~~~~~~------------h--~~~~i 351 (821)
.+.+ ....... .++.+.+.+..|++ .-....|...|. +|+.+..+.. . ...-.
T Consensus 162 -----~~~i---~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVL 233 (264)
T PF05096_consen 162 -----VRTI---QVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVL 233 (264)
T ss_dssp -----EEEE---E-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred -----EEEE---EEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCee
Confidence 2222 1111222 23334444332222 223333444444 4444433311 0 12246
Q ss_pred EEEEEecCCCEEEEEe
Q 003423 352 WRCLYDSLSSLLVTAG 367 (821)
Q Consensus 352 ~~l~~~~~~~~l~tg~ 367 (821)
..||++|....+...|
T Consensus 234 NGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 234 NGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EeEeEeCCCCEEEEEe
Confidence 7899998776655554
No 377
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.23 Score=53.14 Aligned_cols=72 Identities=10% Similarity=0.052 Sum_probs=58.3
Q ss_pred CcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
-.|.-+.|+| .-.++|++..+|.|.+..+. .+.+.++.-|......++++ .+||++||.|-.||+|++-|..
T Consensus 21 ~~i~~~ewnP---~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W---~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 21 INIKRIEWNP---KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCW---RPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred cceEEEEEcC---ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeee---cCCCCEEEEEecCCeEEEEEcc
Confidence 4578899999 88999999999999888876 66666676554444445554 4899999999999999999998
No 378
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.95 E-value=11 Score=40.82 Aligned_cols=165 Identities=12% Similarity=0.140 Sum_probs=89.6
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeec---CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEE
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~---~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~ 92 (821)
...||..++|. . |...+++.- +|.++.=| .+.+..|+ .|+|+.|.|.++...+ .++|
T Consensus 18 AiHPvhGlaWT--D----GkqVvLT~L~l~~gE~kfGd---s~viGqFE-----hV~GlsW~P~~~~~~p------aLLA 77 (671)
T PF15390_consen 18 AIHPVHGLAWT--D----GKQVVLTDLQLHNGEPKFGD---SKVIGQFE-----HVHGLSWAPPCTADTP------ALLA 77 (671)
T ss_pred hhccccceEec--C----CCEEEEEeeeeeCCccccCC---ccEeeccc-----eeeeeeecCcccCCCC------ceEE
Confidence 34578888887 2 245555532 45555433 23455544 4999999987644333 5899
Q ss_pred EEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEE
Q 003423 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (821)
Q Consensus 93 ~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~ 172 (821)
+-..+.|.+|.+.....+........ ..+.-..++-. -..+.|+| ....|++=.....-.+.++.......+
T Consensus 78 VQHkkhVtVWqL~~s~~e~~K~l~sQ--tcEi~e~~pvL---pQGCVWHP---k~~iL~VLT~~dvSV~~sV~~d~srVk 149 (671)
T PF15390_consen 78 VQHKKHVTVWQLCPSTTERNKLLMSQ--TCEIREPFPVL---PQGCVWHP---KKAILTVLTARDVSVLPSVHCDSSRVK 149 (671)
T ss_pred EeccceEEEEEeccCccccccceeee--eeeccCCcccC---CCcccccC---CCceEEEEecCceeEeeeeeeCCceEE
Confidence 99999999999985432221100000 00011111111 23478899 888777655544445566654333222
Q ss_pred EccCcceeEEEEeeccCCccCeEEEEE-eeCCEEEEEEcc
Q 003423 173 VHSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVD 211 (821)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg-~~dg~i~vwd~~ 211 (821)
..-.....+.++++ .+||.+|+.+ +..=.-++||-.
T Consensus 150 aDi~~~G~IhCACW---T~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 150 ADIKTSGLIHCACW---TKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EeccCCceEEEEEe---cCcCCEEEEEeCCeEEEEEecCc
Confidence 22233344555555 3567666554 223345688755
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.93 E-value=0.64 Score=48.85 Aligned_cols=144 Identities=17% Similarity=0.130 Sum_probs=90.8
Q ss_pred eEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCC--EE-----EEEECCCcEEE
Q 003423 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR--SL-----AIGCSDNSIRV 161 (821)
Q Consensus 89 ~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~--~l-----~t~~~d~~i~i 161 (821)
.++...+...=.|+.++.+. ++.+...+-|.+ |.-+.+.| +.+ .| +.|..|+.|.-
T Consensus 346 nlil~~~~~~~~l~klDIE~-------------GKIVeEWk~~~d-i~mv~~t~---d~K~~Ql~~e~TlvGLs~n~vfr 408 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIER-------------GKIVEEWKFEDD-INMVDITP---DFKFAQLTSEQTLVGLSDNSVFR 408 (644)
T ss_pred ceEeeCCCCcCcceeeeccc-------------ceeeeEeeccCC-cceeeccC---CcchhcccccccEEeecCCceEE
Confidence 46666666656666666553 466677766666 77788877 432 22 34777999999
Q ss_pred EEccC-Cc-eeEEEccC--cceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCccee
Q 003423 162 WDISN-SS-IILEVHSP--ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (821)
Q Consensus 162 wd~~~-~~-~~~~~~~~--~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (821)
||.+- +. .+.-.+++ .+..-+++.. .-...+||+|+.+|.|++||--
T Consensus 409 iDpRv~~~~kl~~~q~kqy~~k~nFsc~a---TT~sG~IvvgS~~GdIRLYdri-------------------------- 459 (644)
T KOG2395|consen 409 IDPRVQGKNKLAVVQSKQYSTKNNFSCFA---TTESGYIVVGSLKGDIRLYDRI-------------------------- 459 (644)
T ss_pred ecccccCcceeeeeeccccccccccceee---ecCCceEEEeecCCcEEeehhh--------------------------
Confidence 99873 22 22111211 1111122111 1345689999999999999965
Q ss_pred eecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 003423 238 KLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (821)
Q Consensus 238 ~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~ 286 (821)
.......+.|-..+|..|..+.+|++++..+. ..+.+-++.
T Consensus 460 -------~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t~ 500 (644)
T KOG2395|consen 460 -------GRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDTL 500 (644)
T ss_pred -------hhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEEe
Confidence 22333345677889999999999998765544 566666654
No 380
>PHA02713 hypothetical protein; Provisional
Probab=93.68 E-value=4.7 Score=45.40 Aligned_cols=61 Identities=5% Similarity=0.040 Sum_probs=33.6
Q ss_pred CCCEEEEEeCC------CeEEEEeccc-CcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCC--eEEEEcC
Q 003423 267 CGSKLVSVSDD------RSARIWEVRA-EYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC--TCRVWGS 335 (821)
Q Consensus 267 ~~~~l~s~s~D------g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg--~i~iwd~ 335 (821)
+++..+.|+.+ ..+..||..+ .+. ..+ ..+.........+.+.+...+.||.|+ ++-.||.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W------~~~--~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW------ELI--TTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCe------eEc--cccCcccccceeEEECCEEEEEeeecceeehhhcCc
Confidence 45666666654 2466788886 443 111 112222222334455577788888888 5666665
No 381
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.33 E-value=1.6 Score=48.89 Aligned_cols=125 Identities=10% Similarity=0.082 Sum_probs=76.2
Q ss_pred CCCeEEEEECCCCcEEEeeecCCCCccccc--CCc--cceeeeeEEEecccCceEEEEEee--cCCCEEEEEcCCCcEEE
Q 003423 533 LGHRFIFTADPKGRLKLWQLCDPFSSVCYE--SSK--TNNVFLVAEFSSCFGARIMCLDAS--FEDEVLFCGDLRGNLVL 606 (821)
Q Consensus 533 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~--~~~~~~~~~~~~~h~~~I~~l~~s--~~~~~L~sgs~dG~i~i 606 (821)
-+...|+++..||.|.+|..+.-....... ..+ .........|...-...+..+++. ...+++|.++....|.|
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 356789999999999999875321000000 000 000111111222335578899998 77889999999999999
Q ss_pred EecCcccccccccccccccCcccccccccCCcceEEEEEEecCCCc---eEEEEecCCCeEEEEEe
Q 003423 607 FPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQ---TEIRSTGGDGCICYLEY 669 (821)
Q Consensus 607 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~---~~l~t~g~Dg~i~iw~~ 669 (821)
|-+.... + ...........| .|-+|+|.+...+. ..+++++-.|.+-+|++
T Consensus 192 Faf~l~~-------~--r~~~~~s~~~~h---NIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVD-------E--RFYHVPSHQHSH---NIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccc-------c--cccccccccccc---CCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8766320 0 111111111234 79999999875322 37888999999999888
No 382
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=5.2 Score=44.42 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=42.7
Q ss_pred CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeec
Q 003423 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFE 107 (821)
Q Consensus 43 ~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~ 107 (821)
-..|+||+. +|+++.++.-.++ ++.+|.|+.+ ..++++..+|++.+|++..+
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs~~-----------eeLI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHG-ELIGMGWSDD-----------EELICVQKDGTVHVYGLLGE 114 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCC-CeeeecccCC-----------ceEEEEeccceEEEeecchh
Confidence 467999995 7899888877666 7889999854 36899999999999999754
No 383
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.81 E-value=10 Score=37.02 Aligned_cols=100 Identities=11% Similarity=0.119 Sum_probs=63.0
Q ss_pred EEEEeccCCCCCCcceEEeec--CCeEEEEECCCCeeeeEEEeeccccEEe-EEeccccCCCCCCccceeeEEEEEc---
Q 003423 22 ALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHG-ISCNFINCTEGSVSTRVTFEVALFG--- 95 (821)
Q Consensus 22 ~l~~~~~p~~~~~~~~l~~g~--~~~i~iwd~~t~~~~~~~~~~~~~~i~~-i~~~~~~~~~~~~~~~~~~~l~~~g--- 95 (821)
.++|+ |. ..+-++..- +....++|.++.+.+..+...++-.-.+ =.|++++ ..+.++-.
T Consensus 72 gi~~~--p~---~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG----------~~LYATEndfd 136 (366)
T COG3490 72 GIAFH--PA---LPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG----------RLLYATENDFD 136 (366)
T ss_pred CeecC--CC---CcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC----------cEEEeecCCCC
Confidence 45666 65 233333343 5688999999988776665433211111 1355443 23444443
Q ss_pred --CCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEE
Q 003423 96 --EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (821)
Q Consensus 96 --~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~ 153 (821)
.+.|-|||.... +..+..+..|.=.-..+.+.+ ||+.|+.+
T Consensus 137 ~~rGViGvYd~r~~--------------fqrvgE~~t~GiGpHev~lm~---DGrtlvva 179 (366)
T COG3490 137 PNRGVIGVYDAREG--------------FQRVGEFSTHGIGPHEVTLMA---DGRTLVVA 179 (366)
T ss_pred CCCceEEEEecccc--------------cceecccccCCcCcceeEEec---CCcEEEEe
Confidence 378999998843 456677778877777889999 99999877
No 384
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.80 E-value=0.4 Score=44.83 Aligned_cols=102 Identities=14% Similarity=0.051 Sum_probs=65.9
Q ss_pred CCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc---CCEEEEEeCCCeEEEEcC-CCceeeEe
Q 003423 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMI 343 (821)
Q Consensus 268 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~---~~~l~s~~~dg~i~iwd~-~~~~~~~~ 343 (821)
+..++.|+.||.|.+|+...... .. .....-...|-+.... +.+..+++.||.|+.|+. .++.+...
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~-----~~----d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~ 140 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGA-----HS----DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV 140 (238)
T ss_pred CceEEeecccceEEEecCCccch-----HH----HhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeee
Confidence 45789999999999998874321 10 0111112223232222 358899999999999999 56666666
Q ss_pred ecccCCCeEEEEEecCCCEEEEE--eCCCcEEEEEcC
Q 003423 344 KEHIGRGIWRCLYDSLSSLLVTA--GFDSAIKVHQFQ 378 (821)
Q Consensus 344 ~~h~~~~i~~l~~~~~~~~l~tg--~~dg~I~iwd~~ 378 (821)
..|...++........++.++.+ +.|..++.|++.
T Consensus 141 g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 141 GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 66663345565666666777777 777788888774
No 385
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.36 E-value=11 Score=40.83 Aligned_cols=121 Identities=16% Similarity=0.301 Sum_probs=63.5
Q ss_pred CcEEEEEEeecCCCC--CEEEEEECCCcEEEEEccC-----CceeEEEccCcc---eeEEEEeeccCCccCeEEEEEeeC
Q 003423 133 HWVFDVCFLKVCNGN--RSLAIGCSDNSIRVWDISN-----SSIILEVHSPER---CLLYSMKLWGDNLEALRIASGTIY 202 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~--~~l~t~~~d~~i~iwd~~~-----~~~~~~~~~~~~---~~~~s~~~~~~s~~~~~l~sg~~d 202 (821)
.-|..+.|.|....+ .+||+ .....|.||.+.. .+.+..-.++.+ .++-.-+.| .|....|++=+..
T Consensus 57 EhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVW--HPk~~iL~VLT~~ 133 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVW--HPKKAILTVLTAR 133 (671)
T ss_pred ceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccc--cCCCceEEEEecC
Confidence 458899999843222 35554 4567899999862 222221111110 001011111 1455555555444
Q ss_pred CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEe-CCCeEE
Q 003423 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-DDRSAR 281 (821)
Q Consensus 203 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s-~Dg~i~ 281 (821)
..-.+.++... ..+....+ .-.|-|.|.+|.+||++|+.+- ..=.-.
T Consensus 134 dvSV~~sV~~d-------------------------------~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSy 181 (671)
T PF15390_consen 134 DVSVLPSVHCD-------------------------------SSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSY 181 (671)
T ss_pred ceeEeeeeeeC-------------------------------CceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEE
Confidence 44445555400 12223333 3567899999999998876543 334567
Q ss_pred EEecccC
Q 003423 282 IWEVRAE 288 (821)
Q Consensus 282 iwd~~~~ 288 (821)
+||-...
T Consensus 182 iWd~~qK 188 (671)
T PF15390_consen 182 IWDSAQK 188 (671)
T ss_pred EecCchh
Confidence 8885543
No 386
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.19 E-value=20 Score=40.48 Aligned_cols=185 Identities=11% Similarity=0.110 Sum_probs=93.0
Q ss_pred CCCEEEEEECC------CcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeC-C-----EEEEEEcccC
Q 003423 146 GNRSLAIGCSD------NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY-N-----EIIVWKVDWE 213 (821)
Q Consensus 146 ~~~~l~t~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d-g-----~i~vwd~~~~ 213 (821)
.+.+++.|+.+ ..+..+|..++.-.....-+......++.. .++.+.++|+.| | .+..||...+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~----~~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV----LNGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE----ECCEEEEEccccCCCcccceEEEecCCCC
Confidence 45567777766 367888888775433222222222333333 356777888888 3 3455665511
Q ss_pred CcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEecccC
Q 003423 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR-----SARIWEVRAE 288 (821)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg-----~i~iwd~~~~ 288 (821)
+...+..+.......-...+ +|...|.||.|| ++-.||..+.
T Consensus 360 -------------------------------~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~ 406 (571)
T KOG4441|consen 360 -------------------------------QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTN 406 (571)
T ss_pred -------------------------------ceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCC
Confidence 11112222211111111111 677788888886 4667887776
Q ss_pred cccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCC------eEEEEcCC-C--ceeeEeecccCCCeEEEEEecC
Q 003423 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC------TCRVWGSD-G--KQLKMIKEHIGRGIWRCLYDSL 359 (821)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg------~i~iwd~~-~--~~~~~~~~h~~~~i~~l~~~~~ 359 (821)
+. ..+. .........-.+.+.+...+.||.++ ++..||.. + +.+..+..... -..++. -+
T Consensus 407 ~W------~~va--~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~--~~g~a~-~~ 475 (571)
T KOG4441|consen 407 KW------TPVA--PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS--GFGVAV-LN 475 (571)
T ss_pred cc------cccC--CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc--cceEEE-EC
Confidence 54 1110 11112222333445567777888665 45667762 2 22333322222 112332 35
Q ss_pred CCEEEEEeCCCc-----EEEEEcC
Q 003423 360 SSLLVTAGFDSA-----IKVHQFQ 378 (821)
Q Consensus 360 ~~~l~tg~~dg~-----I~iwd~~ 378 (821)
+.+.+.||.|+. |..||..
T Consensus 476 ~~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 476 GKIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred CEEEEECCccCCCccceEEEEcCC
Confidence 778888888873 4455553
No 387
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.93 E-value=0.058 Score=59.70 Aligned_cols=95 Identities=20% Similarity=0.263 Sum_probs=61.9
Q ss_pred CeEEEEECC--CCeeeeEEEee----ccccEEeEEeccccCCCCCCccceeeEEEEE-cCCeEEEEEEeecCCCCCCCCC
Q 003423 44 SQVLLYDLE--AGTLIRPFQVF----HGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQP 116 (821)
Q Consensus 44 ~~i~iwd~~--t~~~~~~~~~~----~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~-g~~~v~i~~~~~~~~~~~~~~~ 116 (821)
|.+.|||+. .|++...+.++ .+..+.-+.|.|-- .. ..++... .++.+++..++...
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~----~~----~~~ic~~~~~~~i~lL~~~ra~-------- 216 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIA----VN----KVYICYGLKGGEIRLLNINRAL-------- 216 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccc----cc----cceeeeccCCCceeEeeechHH--------
Confidence 789999986 56666555543 23334334444332 22 1223222 36888888877542
Q ss_pred ccccccceeeeccCCCCcEEEEEE-----------eecCCCCCEEEEEECCCcEEEEEcc
Q 003423 117 ETCVNLSLVQSLPRLSHWVFDVCF-----------LKVCNGNRSLAIGCSDNSIRVWDIS 165 (821)
Q Consensus 117 ~~~~~~~~~~~~~~h~~~I~~~~~-----------~~~~~~~~~l~t~~~d~~i~iwd~~ 165 (821)
..-+.+|..++.+++| +| ||+.+|+++.||.++.|.+.
T Consensus 217 --------~~l~rsHs~~~~d~a~~~~g~~~l~~lSp---DGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 217 --------RSLFRSHSQRVTDMAFFAEGVLKLASLSP---DGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred --------HHHHHhcCCCcccHHHHhhchhhheeeCC---CCcEEEEeecCCccceeeee
Confidence 2445668888888776 55 99999999999999999875
No 388
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.66 E-value=20 Score=37.79 Aligned_cols=242 Identities=13% Similarity=0.154 Sum_probs=98.5
Q ss_pred CeEEEEECCC-----CeeeeEEEeec-cccEEeEEecccc-CCCCCCccceeeEEEEEc--CCeEEEEEEeecCCCCCCC
Q 003423 44 SQVLLYDLEA-----GTLIRPFQVFH-GIRLHGISCNFIN-CTEGSVSTRVTFEVALFG--EKRVKLFELNFELSPNSQY 114 (821)
Q Consensus 44 ~~i~iwd~~t-----~~~~~~~~~~~-~~~i~~i~~~~~~-~~~~~~~~~~~~~l~~~g--~~~v~i~~~~~~~~~~~~~ 114 (821)
..|.+.|++- ++.++++.... +...|-.-|+... |.. .+......+|++-+ .+.|.|+|+.... ..
T Consensus 37 D~LatVDvdP~S~tYgqVIhrl~mp~~GDElHH~GWNaCSsc~~-~~~~~~Rr~Li~PgL~SsrIyviD~~~dP--r~-- 111 (461)
T PF05694_consen 37 DYLATVDVDPDSPTYGQVIHRLPMPNRGDELHHSGWNACSSCHY-GDPSKERRYLILPGLRSSRIYVIDTKTDP--RK-- 111 (461)
T ss_dssp -EEEEEE--TTSTTTTSEEEEEE-SSS---B---EES--GGSTT---TT--S-EEEEEBTTT--EEEEE--S-T--TS--
T ss_pred CeEEEEECCCCCCCcccEEEEEeCCCCCCccccccCcccccccC-CCCcccCCcEEeeeeccCcEEEEECCCCC--CC--
Confidence 3677777753 68889988755 3578888776321 221 11111134555555 6788888877432 10
Q ss_pred CCccccccceeeeccC---CC----CcEEEEEEeecCCCCCEEEEEEC------CCcEEEEEccCCceeEEEccCcceeE
Q 003423 115 QPETCVNLSLVQSLPR---LS----HWVFDVCFLKVCNGNRSLAIGCS------DNSIRVWDISNSSIILEVHSPERCLL 181 (821)
Q Consensus 115 ~~~~~~~~~~~~~~~~---h~----~~I~~~~~~~~~~~~~~l~t~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~ 181 (821)
.++.+.+.. +. ..-..+-..| +|+.++++-. -|-+.+.|-++.+.............
T Consensus 112 -------P~l~KvIe~~ev~~k~g~s~PHT~Hclp---~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~ 181 (461)
T PF05694_consen 112 -------PRLHKVIEPEEVFEKTGLSRPHTVHCLP---DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQP 181 (461)
T ss_dssp --------EEEEEE-HHHHHHHH-EEEEEEEEE-S---S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT--
T ss_pred -------CceEeeeCHHHHHhhcCCCCCceeeecC---CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCC
Confidence 122222221 11 1122223335 8888887632 34578888777777766665544445
Q ss_pred EEEeeccCCccCeEEEEEee--------------------CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecc
Q 003423 182 YSMKLWGDNLEALRIASGTI--------------------YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (821)
Q Consensus 182 ~s~~~~~~s~~~~~l~sg~~--------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (821)
+...||.. +..+.+++... -..+.+||+.
T Consensus 182 ~gYDfw~q-pr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~------------------------------ 230 (461)
T PF05694_consen 182 FGYDFWYQ-PRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS------------------------------ 230 (461)
T ss_dssp ----EEEE-TTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETT------------------------------
T ss_pred CCCCeEEc-CCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECC------------------------------
Confidence 55555544 45666666532 2579999998
Q ss_pred cccceeeEEEEecC-CC-cEEEEEEcCCC--CE-EEEEeCCCeEEEEec-ccCcccCCCCceeeeceEEec---------
Q 003423 242 QQHTAVNLFRLVGH-EG-SIFRIEWSSCG--SK-LVSVSDDRSARIWEV-RAEYWKDSDSIEEVGSSVLYG--------- 306 (821)
Q Consensus 242 ~~~~~~~~~~~~~h-~~-~I~~l~~s~~~--~~-l~s~s~Dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~--------- 306 (821)
..+.++++.-- ++ ....|.|..+. .+ ++.|.-..+|..|-- .+++.. ...+-.+......+
T Consensus 231 ---~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~-a~kVi~ip~~~v~~~~lp~ml~~ 306 (461)
T PF05694_consen 231 ---TRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA-AEKVIDIPAKKVEGWILPEMLKP 306 (461)
T ss_dssp ---TTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE-EEEEEEE--EE--SS---GGGGG
T ss_pred ---CCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee-eeEEEECCCcccCcccccccccc
Confidence 56666666532 22 45678876543 33 444444455555533 333220 00010111001111
Q ss_pred ---cceeEEEEEEc--CCEE-EEEeCCCeEEEEcC
Q 003423 307 ---HNARVWDCCLT--DSFI-ITAGEDCTCRVWGS 335 (821)
Q Consensus 307 ---h~~~i~~v~~~--~~~l-~s~~~dg~i~iwd~ 335 (821)
-..-|+++..+ +++| +++-.+|.++.||+
T Consensus 307 ~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDI 341 (461)
T PF05694_consen 307 FGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDI 341 (461)
T ss_dssp G-EE------EEE-TTS-EEEEEETTTTEEEEEE-
T ss_pred cccCCCceEeEEEccCCCEEEEEcccCCcEEEEec
Confidence 12446787777 5555 45668999999999
No 389
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.38 E-value=24 Score=38.17 Aligned_cols=199 Identities=15% Similarity=0.131 Sum_probs=96.2
Q ss_pred EEEEEEcCCCCEEEEE-eCC----CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC--CEE-EEEeCC---
Q 003423 259 IFRIEWSSCGSKLVSV-SDD----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFI-ITAGED--- 327 (821)
Q Consensus 259 I~~l~~s~~~~~l~s~-s~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~l-~s~~~d--- 327 (821)
+....++|+|+++|-+ +.. .++++.|+.+++. +. ..+.. ..-..+.|.+ ..| ++...+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~-----l~----d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF-----LP----DGIEN--PKFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE-----EE----EEEEE--EESEEEEECTTSSEEEEEECSTTTS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC-----cC----Ccccc--cccceEEEeCCCCEEEEEEeCcccc
Confidence 4467899999987643 333 3599999999754 21 11111 1122388873 344 444222
Q ss_pred -------CeEEEEcC-CCce--eeEeecccCCC-eEEEEEecCCCEEEEEeCCC----cEEEEEcCCcCCCcccCCcccc
Q 003423 328 -------CTCRVWGS-DGKQ--LKMIKEHIGRG-IWRCLYDSLSSLLVTAGFDS----AIKVHQFQAFLPGSLESHPEAK 392 (821)
Q Consensus 328 -------g~i~iwd~-~~~~--~~~~~~h~~~~-i~~l~~~~~~~~l~tg~~dg----~I~iwd~~~~~~~~~~~~~~~~ 392 (821)
..|..|.+ +... ...+....... ...+..++++++|+.....+ .+.+.++.....
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~---------- 264 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS---------- 264 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT----------
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC----------
Confidence 23677777 2221 23444444433 56788899999876544322 355555533100
Q ss_pred ccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecC----CcEEEEEecCCCcceeeEeeecc-CCcce
Q 003423 393 EFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH----GYLYHTKLCDMDSVNWNKILQVS-EGMPI 467 (821)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~----g~~~~~~i~~~~~~~~~~~~~~~-~~~~i 467 (821)
.... ...+......+....-...+.+++.++. +.+..+.+.+.....|..++-.+ ....+
T Consensus 265 ---~~~~------------~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l 329 (414)
T PF02897_consen 265 ---PDAK------------PKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL 329 (414)
T ss_dssp ---SS-S------------EEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE
T ss_pred ---CcCC------------cEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeE
Confidence 0000 0011111112222222336667776654 45666666666554566443333 33345
Q ss_pred EEEeccCCCCCCCCCCCcEEEEecCCc--cEEEEEec
Q 003423 468 ICMDLLSNEPKYPCGIDDWVALGDGKG--NMTIVRVV 502 (821)
Q Consensus 468 ~~~~~~~~~~~~s~~~~~~l~~g~~~g--~i~i~~~~ 502 (821)
..+.... +.+++....++ .|+++++.
T Consensus 330 ~~~~~~~---------~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 330 EDVSLFK---------DYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEET---------TEEEEEEEETTEEEEEEEETT
T ss_pred EEEEEEC---------CEEEEEEEECCccEEEEEECC
Confidence 4554422 24555555554 66777765
No 390
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=91.29 E-value=22 Score=37.50 Aligned_cols=48 Identities=15% Similarity=0.274 Sum_probs=36.3
Q ss_pred CCcceeecccee------eeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeee
Q 003423 5 DLSEWRLDVGQY------LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIR 58 (821)
Q Consensus 5 ~i~~w~~~~~~~------~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~ 58 (821)
.+.++|+.+++. ...+....+| |+ +..++...++.|.+++..+++..+
T Consensus 24 ~y~i~d~~~~~~~~l~~~~~~~~~~~~s--P~----g~~~~~v~~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 24 DYYIYDIETGEITPLTPPPPKLQDAKWS--PD----GKYIAFVRDNNLYLRDLATGQETQ 77 (353)
T ss_dssp EEEEEETTTTEEEESS-EETTBSEEEE---SS----STEEEEEETTEEEEESSTTSEEEE
T ss_pred eEEEEecCCCceEECcCCccccccceee--cC----CCeeEEEecCceEEEECCCCCeEE
Confidence 456778887751 2457788999 99 789999999999999998885543
No 391
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.26 E-value=0.72 Score=30.50 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=25.6
Q ss_pred eeeEEEEEeccCCCCCCc--ceEEeecC-CeEEEEECCC
Q 003423 18 GEISALCFVHLPSHLSSL--PFLLAGSG-SQVLLYDLEA 53 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~--~~l~~g~~-~~i~iwd~~t 53 (821)
|.|.+++|+ |+ .. ++|+-+++ +.|.|+|+.+
T Consensus 1 GAvR~~kFs--P~---~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFS--PE---PGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeC--CC---CCcccEEEEEccCCeEEEEEccc
Confidence 468899999 86 23 68888885 9999999985
No 392
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.82 E-value=5.1 Score=44.74 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=69.4
Q ss_pred cceEEeec-CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCC
Q 003423 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (821)
Q Consensus 35 ~~~l~~g~-~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~ 113 (821)
++..++.+ ...+.|||...+.+..+-.......|.++.|... ++++ .+++++-.+.|.+|.-..-+
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst-----~d~q---siLaVGf~~~v~l~~Q~R~d----- 107 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTST-----PDGQ---SILAVGFPHHVLLYTQLRYD----- 107 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeec-----CCCC---EEEEEEcCcEEEEEEccchh-----
Confidence 34444444 5799999999988655544334568999999865 4544 67788888999998653111
Q ss_pred CCCccccccceee--eccCCC-CcEEEEEEeecCCCCCEEEEEECCCcEEEEEc
Q 003423 114 YQPETCVNLSLVQ--SLPRLS-HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (821)
Q Consensus 114 ~~~~~~~~~~~~~--~~~~h~-~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~ 164 (821)
+.. ....+..++ .+..|+ ++|.+..|.+ +|.+++.+ .+.+.|+|-
T Consensus 108 y~~-~~p~w~~i~~i~i~~~T~h~Igds~Wl~---~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 108 YTN-KGPSWAPIRKIDISSHTPHPIGDSIWLK---DGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hhc-CCcccceeEEEEeecCCCCCccceeEec---CCeEEEEe--CCEEEEECC
Confidence 000 001122222 233444 6899999998 88765544 467888763
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=90.54 E-value=11 Score=42.54 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=38.9
Q ss_pred EEEEEEeecCCCCCEEEEEECC------CcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCE----
Q 003423 135 VFDVCFLKVCNGNRSLAIGCSD------NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE---- 204 (821)
Q Consensus 135 I~~~~~~~~~~~~~~l~t~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~---- 204 (821)
-.++++. ++...++|+.| +++..||..+.+-.....-.....-.++.. -++.+-|.|+.||.
T Consensus 325 ~~~~~~~----~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~----l~g~iYavGG~dg~~~l~ 396 (571)
T KOG4441|consen 325 RVGVAVL----NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV----LDGKLYAVGGFDGEKSLN 396 (571)
T ss_pred cccEEEE----CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE----ECCEEEEEeccccccccc
Confidence 3445554 56788888888 357788887766433111111111112221 36778888888864
Q ss_pred -EEEEEcc
Q 003423 205 -IIVWKVD 211 (821)
Q Consensus 205 -i~vwd~~ 211 (821)
+-.||..
T Consensus 397 svE~YDp~ 404 (571)
T KOG4441|consen 397 SVECYDPV 404 (571)
T ss_pred cEEEecCC
Confidence 5556655
No 394
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.54 E-value=41 Score=39.37 Aligned_cols=141 Identities=11% Similarity=0.098 Sum_probs=75.1
Q ss_pred cCCcEEEEEecCCCcceeeEeeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCCCCCcceeEEeec
Q 003423 438 NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS 517 (821)
Q Consensus 438 ~~g~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~ 517 (821)
++|.++.+++..... +.+-+.+.+...++..+. + -.+++.+|- ...+++|++..++...+...+. .
T Consensus 910 ~~g~~ytyk~~~~g~-~lellh~T~~~~~v~Ai~--~--------f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~--~ 975 (1205)
T KOG1898|consen 910 SSGFVYTYKFVRNGD-KLELLHKTEIPGPVGAIC--P--------FQGRVLAGV-GRFLRLYDLGKKKLLRKCELKF--I 975 (1205)
T ss_pred CCCceEEEEEEecCc-eeeeeeccCCCccceEEe--c--------cCCEEEEec-ccEEEEeeCChHHHHhhhhhcc--C
Confidence 345556555554433 223333333344443332 2 224444443 4589999998766644433332 1
Q ss_pred cCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEE
Q 003423 518 AGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFC 597 (821)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~s 597 (821)
| ..+..+. ..+..+++|+..-.+.++....... ++..-....-...|+++.+- |-..+|.
T Consensus 976 p---~~Is~iq----t~~~RI~VgD~qeSV~~~~y~~~~n------------~l~~fadD~~pR~Vt~~~~l-D~~tvag 1035 (1205)
T KOG1898|consen 976 P---NRISSIQ----TYGARIVVGDIQESVHFVRYRREDN------------QLIVFADDPVPRHVTALELL-DYDTVAG 1035 (1205)
T ss_pred c---eEEEEEe----ecceEEEEeeccceEEEEEEecCCC------------eEEEEeCCCccceeeEEEEe-cCCceee
Confidence 1 1122222 2235566666655566554444311 33333333445557887776 4557999
Q ss_pred EcCCCcEEEEecCcc
Q 003423 598 GDLRGNLVLFPLLRD 612 (821)
Q Consensus 598 gs~dG~i~iw~~~~~ 612 (821)
|++-|++.+-.+...
T Consensus 1036 aDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1036 ADRFGNIAVVRIPPD 1050 (1205)
T ss_pred ccccCcEEEEECCCc
Confidence 999999999988654
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.52 E-value=8.1 Score=36.51 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=37.2
Q ss_pred CCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCcc
Q 003423 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (821)
Q Consensus 146 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~ 192 (821)
+|++.+++-..++|...|..+|+.++++.-|.. .+.|++|-+.+.+
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~-qitsccFgGkn~d 267 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP-QITSCCFGGKNLD 267 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC-ceEEEEecCCCcc
Confidence 788888888889999999999999999988844 5678888654433
No 396
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=90.26 E-value=29 Score=37.39 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=50.6
Q ss_pred CeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEE-ECCCc--EEEEEccCCceeEEE
Q 003423 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNS--IRVWDISNSSIILEV 173 (821)
Q Consensus 97 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~-~~d~~--i~iwd~~~~~~~~~~ 173 (821)
..+.++++..+. ...+....++.. .-+|+| +|+.|+-+ ..|+. |.+.|+.++... ++
T Consensus 218 ~~i~~~~l~~g~-------------~~~i~~~~g~~~---~P~fsp---DG~~l~f~~~rdg~~~iy~~dl~~~~~~-~L 277 (425)
T COG0823 218 PRIYYLDLNTGK-------------RPVILNFNGNNG---APAFSP---DGSKLAFSSSRDGSPDIYLMDLDGKNLP-RL 277 (425)
T ss_pred ceEEEEeccCCc-------------cceeeccCCccC---CccCCC---CCCEEEEEECCCCCccEEEEcCCCCcce-ec
Confidence 468888887654 233444555544 478999 99877655 45665 555566665533 23
Q ss_pred ccCcceeEEEEeeccCCccCeEEEE-EeeCCEEEEEEcc
Q 003423 174 HSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVD 211 (821)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~~~~~l~s-g~~dg~i~vwd~~ 211 (821)
..... +-....+ +|||..|+- .+..|.-.||-+.
T Consensus 278 t~~~g-i~~~Ps~---spdG~~ivf~Sdr~G~p~I~~~~ 312 (425)
T COG0823 278 TNGFG-INTSPSW---SPDGSKIVFTSDRGGRPQIYLYD 312 (425)
T ss_pred ccCCc-cccCccC---CCCCCEEEEEeCCCCCcceEEEC
Confidence 32211 1112222 577776654 5556766666555
No 397
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.16 E-value=26 Score=36.47 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=40.7
Q ss_pred CCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEE
Q 003423 534 GHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLV 605 (821)
Q Consensus 534 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~ 605 (821)
.+.++++.-..+.|....++.... +.-...+......++..+++.|||.++++-+.+|.|+
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGS-----------VTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEE-----------EEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCC-----------ccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 567887777777888777754311 1111222244566899999999999999999999875
No 398
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.84 E-value=3.6 Score=47.73 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=39.2
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceee-eceEEeccceeEEEEEEcC
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV-GSSVLYGHNARVWDCCLTD 318 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~h~~~i~~v~~~~ 318 (821)
-....++++|+|.|++++.|-..|++.-|...-... ..+ .+-... ..+|.+++|..
T Consensus 197 ~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik------~~ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 197 VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK------SEIPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred cccceeeEEeccccceeeEecCCCeEEEeeccccee------ecccCCCcCC--CcceeEEEEec
Confidence 456789999999999999999999999887654322 000 000111 56889999974
No 399
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.55 E-value=26 Score=35.60 Aligned_cols=286 Identities=12% Similarity=0.051 Sum_probs=121.9
Q ss_pred cceeeccceeeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCC-CeeeeEEEe--ec--cccEEeEEeccccCCCC
Q 003423 7 SEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA-GTLIRPFQV--FH--GIRLHGISCNFINCTEG 81 (821)
Q Consensus 7 ~~w~~~~~~~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t-~~~~~~~~~--~~--~~~i~~i~~~~~~~~~~ 81 (821)
.-|......-..++.+++|. .+ ..-.++|..+.| +.... |+--..... .. ......|.+...
T Consensus 6 ~~W~~v~l~t~~~l~dV~F~--d~----~~G~~VG~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~----- 72 (302)
T PF14870_consen 6 NSWQQVSLPTDKPLLDVAFV--DP----NHGWAVGAYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN----- 72 (302)
T ss_dssp --EEEEE-S-SS-EEEEEES--SS----S-EEEEETTTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-----
T ss_pred CCcEEeecCCCCceEEEEEe--cC----CEEEEEecCCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-----
Confidence 45666665556688999998 43 455666777643 33332 332221111 11 223555665522
Q ss_pred CCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEE
Q 003423 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (821)
Q Consensus 82 ~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~i 161 (821)
...++...+ + |+....+. .+++.+..-...+.....+.... ++..+++ +..| .|
T Consensus 73 -------~g~ivG~~g-~-ll~T~DgG-----------~tW~~v~l~~~lpgs~~~i~~l~---~~~~~l~-~~~G--~i 126 (302)
T PF14870_consen 73 -------EGWIVGEPG-L-LLHTTDGG-----------KTWERVPLSSKLPGSPFGITALG---DGSAELA-GDRG--AI 126 (302)
T ss_dssp -------EEEEEEETT-E-EEEESSTT-----------SS-EE----TT-SS-EEEEEEEE---TTEEEEE-ETT----E
T ss_pred -------ceEEEcCCc-e-EEEecCCC-----------CCcEEeecCCCCCCCeeEEEEcC---CCcEEEE-cCCC--cE
Confidence 233333333 2 22222111 12333221112223334444444 4443333 3334 34
Q ss_pred EEccCCc-eeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeec
Q 003423 162 WDISNSS-IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (821)
Q Consensus 162 wd~~~~~-~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (821)
|-..++- .=+.+.......+..+.. ++++.+++++..-+-..-||...
T Consensus 127 y~T~DgG~tW~~~~~~~~gs~~~~~r---~~dG~~vavs~~G~~~~s~~~G~---------------------------- 175 (302)
T PF14870_consen 127 YRTTDGGKTWQAVVSETSGSINDITR---SSDGRYVAVSSRGNFYSSWDPGQ---------------------------- 175 (302)
T ss_dssp EEESSTTSSEEEEE-S----EEEEEE----TTS-EEEEETTSSEEEEE-TT-----------------------------
T ss_pred EEeCCCCCCeeEcccCCcceeEeEEE---CCCCcEEEEECcccEEEEecCCC----------------------------
Confidence 5444432 222222222233444433 47889998887766667788650
Q ss_pred ccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCce-eeeceEEeccceeEEEEEEc-C
Q 003423 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE-EVGSSVLYGHNARVWDCCLT-D 318 (821)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~h~~~i~~v~~~-~ 318 (821)
....+.. +.-...|..+.|.|++.+.+.+ ..|.|+.=+....... -. .+ .....-.-.+.+++|. +
T Consensus 176 ---~~w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~----w~~~~--~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 176 ---TTWQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET----WSEPI--IPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp ---SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE----E---B---TTSS--S-EEEEEESSS
T ss_pred ---ccceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc----ccccc--CCcccCceeeEEEEecCC
Confidence 0122222 2346789999999998776644 7788887772221100 00 00 0011122237888998 5
Q ss_pred CEEEEEeCCCeEEEEcCCCceeeEeec--ccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 003423 319 SFIITAGEDCTCRVWGSDGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVH 375 (821)
Q Consensus 319 ~~l~s~~~dg~i~iwd~~~~~~~~~~~--h~~~~i~~l~~~~~~~~l~tg~~dg~I~iw 375 (821)
+.+..++..|++..=.=.|+.=+..+. .....+..+.|.+..+-++ -|.+|.|.-|
T Consensus 244 ~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 244 NEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp S-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred CCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 677777777766554435554444432 1122478888876544444 4567877554
No 400
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.52 E-value=16 Score=35.78 Aligned_cols=47 Identities=26% Similarity=0.389 Sum_probs=32.0
Q ss_pred EEeccCCCCCCcceEEeecC------CeEEEEECCCC-eeeeEEEeeccccEEeEEecccc
Q 003423 24 CFVHLPSHLSSLPFLLAGSG------SQVLLYDLEAG-TLIRPFQVFHGIRLHGISCNFIN 77 (821)
Q Consensus 24 ~~~~~p~~~~~~~~l~~g~~------~~i~iwd~~t~-~~~~~~~~~~~~~i~~i~~~~~~ 77 (821)
.|| || +++|.+.++ |.|-|||...+ +.+.++.. .+..-|.+.+.+++
T Consensus 120 vfs--~d----G~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t-~GiGpHev~lm~DG 173 (366)
T COG3490 120 VFS--PD----GRLLYATENDFDPNRGVIGVYDAREGFQRVGEFST-HGIGPHEVTLMADG 173 (366)
T ss_pred ccC--CC----CcEEEeecCCCCCCCceEEEEecccccceeccccc-CCcCcceeEEecCC
Confidence 367 77 789998773 79999998743 34444443 34457778887554
No 401
>PRK13684 Ycf48-like protein; Provisional
Probab=89.31 E-value=24 Score=36.74 Aligned_cols=158 Identities=9% Similarity=-0.065 Sum_probs=83.8
Q ss_pred eeeeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc
Q 003423 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (821)
Q Consensus 16 ~~~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g 95 (821)
..+.+.++.+. |+ +.++++|..|.+..-.-..++.-..+.......++++.+.+.. ..+++..
T Consensus 171 ~~g~~~~i~~~--~~----g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g-----------~~~~vg~ 233 (334)
T PRK13684 171 AAGVVRNLRRS--PD----GKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDG-----------NLWMLAR 233 (334)
T ss_pred CcceEEEEEEC--CC----CeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCC-----------CEEEEec
Confidence 45678888888 87 6788888888665431122333333444445578888887542 3555655
Q ss_pred CCeEEEEEEeecCCCCCCCCCccccccceeeec-cCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEc
Q 003423 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSL-PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 96 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 174 (821)
.+.+++=.-+.+. .++....- ..-...+.++.+.| ++..+++ +.+|.+. .....++.-....
T Consensus 234 ~G~~~~~s~d~G~------------sW~~~~~~~~~~~~~l~~v~~~~---~~~~~~~-G~~G~v~-~S~d~G~tW~~~~ 296 (334)
T PRK13684 234 GGQIRFNDPDDLE------------SWSKPIIPEITNGYGYLDLAYRT---PGEIWAG-GGNGTLL-VSKDGGKTWEKDP 296 (334)
T ss_pred CCEEEEccCCCCC------------ccccccCCccccccceeeEEEcC---CCCEEEE-cCCCeEE-EeCCCCCCCeECC
Confidence 6655421112111 12211111 11123578899988 7776554 4566554 3444444433332
Q ss_pred c--CcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 175 S--PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 175 ~--~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
. ......+.+.+. ++......+..|.|.-|+-.
T Consensus 297 ~~~~~~~~~~~~~~~----~~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 297 VGEEVPSNFYKIVFL----DPEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred cCCCCCcceEEEEEe----CCCceEEECCCceEEEecCC
Confidence 2 122245666553 22334445567888887644
No 402
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.26 E-value=15 Score=34.22 Aligned_cols=97 Identities=10% Similarity=0.069 Sum_probs=55.3
Q ss_pred CCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCcccccc
Q 003423 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNL 122 (821)
Q Consensus 43 ~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~ 122 (821)
...|++||+.+|+.+.+..... ..+.+--.... .| ..+.++|.++....+|.++-
T Consensus 67 ~S~ir~~~L~~gq~~~s~~l~~-~~~FgEGit~~-----gd----~~y~LTw~egvaf~~d~~t~--------------- 121 (262)
T COG3823 67 FSKIRVSDLTTGQEIFSEKLAP-DTVFGEGITKL-----GD----YFYQLTWKEGVAFKYDADTL--------------- 121 (262)
T ss_pred cceeEEEeccCceEEEEeecCC-ccccccceeec-----cc----eEEEEEeccceeEEEChHHh---------------
Confidence 3789999999999887766432 12333221111 11 47888999999999987642
Q ss_pred ceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCcee
Q 003423 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (821)
Q Consensus 123 ~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~ 170 (821)
+.+..+. ..+.=..++ . ++.-|..+....+++.-|.++-...
T Consensus 122 ~~lg~~~-y~GeGWgLt--~---d~~~LimsdGsatL~frdP~tfa~~ 163 (262)
T COG3823 122 EELGRFS-YEGEGWGLT--S---DDKNLIMSDGSATLQFRDPKTFAEL 163 (262)
T ss_pred hhhcccc-cCCcceeee--c---CCcceEeeCCceEEEecCHHHhhhc
Confidence 2222221 112222333 2 5555666655556666676654443
No 403
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.84 E-value=9.2 Score=44.02 Aligned_cols=91 Identities=11% Similarity=0.161 Sum_probs=58.8
Q ss_pred CceEEEEEeecCCCEEEEEcCCCcEEEEecCccc-----ccccccccccccCccc-ccccccCCcceEEEEEEecCCCce
Q 003423 580 GARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDL-----LNDKSVALHVEVSPLN-YFKGAHGISTVSTLSVAKLRSNQT 653 (821)
Q Consensus 580 ~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~h~~~~Vt~i~~~~~~~~~~ 653 (821)
.-.|..+.++|+|++||..+..| |.|-.+.... ...+.....++..++. .+...+....|..+.|+|.+.++.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 34689999999999999998865 4555554321 0011111111211222 222234456899999999876667
Q ss_pred EEEEecCCCeEEEEEeec
Q 003423 654 EIRSTGGDGCICYLEYDK 671 (821)
Q Consensus 654 ~l~t~g~Dg~i~iw~~~~ 671 (821)
.|+.-..|+++|+|++..
T Consensus 163 ~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISD 180 (717)
T ss_pred eEEEEecCCEEEEEecCC
Confidence 888888899999999954
No 404
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=88.47 E-value=13 Score=41.76 Aligned_cols=111 Identities=12% Similarity=0.182 Sum_probs=63.2
Q ss_pred CeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEee--cCCCEEEEEcCCCcEEEEecCcc
Q 003423 535 HRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDAS--FEDEVLFCGDLRGNLVLFPLLRD 612 (821)
Q Consensus 535 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s--~~~~~L~sgs~dG~i~iw~~~~~ 612 (821)
++..++-+....+.|||..... ++....| .....|.+++|. |+++.+.+-+-...|.+|--.+-
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~------------lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGV------------LEYEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY 106 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcE------------EEEeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence 3444444445579999998762 2333333 347789999997 67887776667788888853211
Q ss_pred cccccccccccccCcccccc-cccCCcceEEEEEEecCCCceEEEEecCCCeEEEEE
Q 003423 613 LLNDKSVALHVEVSPLNYFK-GAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLE 668 (821)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~-~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~ 668 (821)
... ...+ .+.++.... ..|....|...+|. +++..++.+|. .+.|++
T Consensus 107 dy~---~~~p-~w~~i~~i~i~~~T~h~Igds~Wl---~~G~LvV~sGN--qlfv~d 154 (631)
T PF12234_consen 107 DYT---NKGP-SWAPIRKIDISSHTPHPIGDSIWL---KDGTLVVGSGN--QLFVFD 154 (631)
T ss_pred hhh---cCCc-ccceeEEEEeecCCCCCccceeEe---cCCeEEEEeCC--EEEEEC
Confidence 000 1111 222333221 13333478888899 56566666654 455553
No 405
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=87.80 E-value=41 Score=35.79 Aligned_cols=196 Identities=13% Similarity=0.122 Sum_probs=111.6
Q ss_pred EEEEeccCCCCCCcceEEe-ecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEc--CCe
Q 003423 22 ALCFVHLPSHLSSLPFLLA-GSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG--EKR 98 (821)
Q Consensus 22 ~l~~~~~p~~~~~~~~l~~-g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g--~~~ 98 (821)
.++++ ++ +.+..+. ..++.|.+.|..+.+.++...... ..+++.+++++ + ..+++-.+ ++.
T Consensus 78 ~i~v~--~~---~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~-------~--~vYV~n~~~~~~~ 141 (381)
T COG3391 78 GVAVN--PA---GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDG-------K--YVYVANAGNGNNT 141 (381)
T ss_pred ceeeC--CC---CCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCC-------C--EEEEEecccCCce
Confidence 45566 55 2323333 336899999988888887777644 46778887553 2 23333342 455
Q ss_pred EEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEE-CCCcEEEEEccCCceeE-E----
Q 003423 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSIIL-E---- 172 (821)
Q Consensus 99 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~-~d~~i~iwd~~~~~~~~-~---- 172 (821)
+.+.|-... +.......-..+ ..+++.| +|+.+.++. .++.|.+.|........ .
T Consensus 142 vsvid~~t~---------------~~~~~~~vG~~P-~~~a~~p---~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~ 202 (381)
T COG3391 142 VSVIDAATN---------------KVTATIPVGNTP-TGVAVDP---DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSL 202 (381)
T ss_pred EEEEeCCCC---------------eEEEEEecCCCc-ceEEECC---CCCeEEEEecCCCeEEEEeCCCcceeccccccc
Confidence 555554432 233333322233 8899999 998666554 78999999976665543 1
Q ss_pred EccCcceeEEEEeeccCCccCeEEEEEeeC---CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeE
Q 003423 173 VHSPERCLLYSMKLWGDNLEALRIASGTIY---NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (821)
Q Consensus 173 ~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (821)
...... -+.+.+ ++++..+...... +.+...|.. .....
T Consensus 203 ~~~~~~--P~~i~v---~~~g~~~yV~~~~~~~~~v~~id~~---------------------------------~~~v~ 244 (381)
T COG3391 203 VGVGTG--PAGIAV---DPDGNRVYVANDGSGSNNVLKIDTA---------------------------------TGNVT 244 (381)
T ss_pred cccCCC--CceEEE---CCCCCEEEEEeccCCCceEEEEeCC---------------------------------CceEE
Confidence 111111 111122 4666655544333 477777766 22222
Q ss_pred EE-EecCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEecccCcc
Q 003423 250 FR-LVGHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYW 290 (821)
Q Consensus 250 ~~-~~~h~~~I~~l~~s~~~~~l~s~s~-Dg~i~iwd~~~~~~ 290 (821)
.. ...-...-..+..+|+|+.+..... .+.+.+-|..+...
T Consensus 245 ~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 245 ATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred EeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 22 1111114567899999998876643 47788888776543
No 406
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.26 E-value=2.4 Score=28.08 Aligned_cols=33 Identities=15% Similarity=0.012 Sum_probs=26.5
Q ss_pred CcEEEEEEeecCCCC--CEEEEEECCCcEEEEEccCC
Q 003423 133 HWVFDVCFLKVCNGN--RSLAIGCSDNSIRVWDISNS 167 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~--~~l~t~~~d~~i~iwd~~~~ 167 (821)
+.|.++.|+|. ++ ++|+.+-..+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~--~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPE--PGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCC--CCcccEEEEEccCCeEEEEEcccC
Confidence 36899999982 33 68888888899999999853
No 407
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=86.65 E-value=73 Score=37.45 Aligned_cols=140 Identities=14% Similarity=0.156 Sum_probs=75.6
Q ss_pred CCccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeee
Q 003423 492 GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFL 571 (821)
Q Consensus 492 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 571 (821)
.+|.++.|++-.... .+.+..+...+ ++..+..|...++.+| -...+++|++.... +
T Consensus 910 ~~g~~ytyk~~~~g~----~lellh~T~~~----~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~--------------l 966 (1205)
T KOG1898|consen 910 SSGFVYTYKFVRNGD----KLELLHKTEIP----GPVGAICPFQGRVLAG-VGRFLRLYDLGKKK--------------L 966 (1205)
T ss_pred CCCceEEEEEEecCc----eeeeeeccCCC----ccceEEeccCCEEEEe-cccEEEEeeCChHH--------------H
Confidence 456677777654322 11222222222 2223334544455444 44579999998762 2
Q ss_pred eEEEecc-cCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccCCcceEEEEEEecCC
Q 003423 572 VAEFSSC-FGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRS 650 (821)
Q Consensus 572 ~~~~~~~-h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~ 650 (821)
.+.+... ....|+.+.+. +..++.|+..-+|.++...+. ...+-.+..---.-.||.+.+. +
T Consensus 967 LRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~------------~n~l~~fadD~~pR~Vt~~~~l---D 1029 (1205)
T KOG1898|consen 967 LRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRRE------------DNQLIVFADDPVPRHVTALELL---D 1029 (1205)
T ss_pred HhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecC------------CCeEEEEeCCCccceeeEEEEe---c
Confidence 2211111 24457777765 678999988777776665432 1112222210012248888776 3
Q ss_pred CceEEEEecCCCeEEEEEeecC
Q 003423 651 NQTEIRSTGGDGCICYLEYDKD 672 (821)
Q Consensus 651 ~~~~l~t~g~Dg~i~iw~~~~~ 672 (821)
...++-+.+-|.+.+-++..+
T Consensus 1030 -~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1030 -YDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred -CCceeeccccCcEEEEECCCc
Confidence 356888888899888887543
No 408
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.60 E-value=7.4 Score=45.36 Aligned_cols=92 Identities=14% Similarity=0.025 Sum_probs=57.7
Q ss_pred EEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCccccccc
Q 003423 538 IFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDK 617 (821)
Q Consensus 538 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~ 617 (821)
.++...|+.|++..+........ . -......+|++|+|.|+.|+.|...|++.-|.-.-.
T Consensus 171 ~av~l~dlsl~V~~~~~~~~~v~-------------s--~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le----- 230 (1405)
T KOG3630|consen 171 SAVDLSDLSLRVKSTKQLAQNVT-------------S--FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE----- 230 (1405)
T ss_pred hhhhccccchhhhhhhhhhhhhc-------------c--cCcccceeeEEeccccceeeEecCCCeEEEeecccc-----
Confidence 45566788888887665421111 1 133667899999999999999999999998864421
Q ss_pred ccccccccCcccccccccCCcceEEEEEEecCCCceEEEEec
Q 003423 618 SVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTG 659 (821)
Q Consensus 618 ~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g 659 (821)
.+..+..+|... ...|++|+|+ ....+++.-+
T Consensus 231 -ik~~ip~Pp~~e------~yrvl~v~Wl---~t~eflvvy~ 262 (1405)
T KOG3630|consen 231 -IKSEIPEPPVEE------NYRVLSVTWL---STQEFLVVYG 262 (1405)
T ss_pred -eeecccCCCcCC------CcceeEEEEe---cceeEEEEec
Confidence 111111222111 3469999999 4545555443
No 409
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.98 E-value=25 Score=39.87 Aligned_cols=122 Identities=11% Similarity=0.095 Sum_probs=76.8
Q ss_pred CcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCc-----e---e----------EEEccCcceeEEEEeeccCCccCe
Q 003423 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-----I---I----------LEVHSPERCLLYSMKLWGDNLEAL 194 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~-----~---~----------~~~~~~~~~~~~s~~~~~~s~~~~ 194 (821)
..|+-+..... .+...|+.|.+||.|.+|.+++-. . . -.+.-.....+|+++++.. ....
T Consensus 101 HtIN~i~v~~l-g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~-~~~r 178 (717)
T PF08728_consen 101 HTINFIKVGDL-GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDY-KKSR 178 (717)
T ss_pred ceeeEEEeccc-CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEec-Ccce
Confidence 44666654431 145688899999999999763200 0 0 0122223345888888633 4577
Q ss_pred EEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCC---C--
Q 003423 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG---S-- 269 (821)
Q Consensus 195 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~---~-- 269 (821)
+||+++....|.||-..... . ....... ..|...|-+|+|.++. .
T Consensus 179 lIAVSsNs~~VTVFaf~l~~------~-----------------------r~~~~~s-~~~~hNIP~VSFl~~~~d~~G~ 228 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVD------E-----------------------RFYHVPS-HQHSHNIPNVSFLDDDLDPNGH 228 (717)
T ss_pred EEEEecCCceEEEEEEeccc------c-----------------------ccccccc-cccccCCCeeEeecCCCCCccc
Confidence 89999999999998776100 0 0000001 1266778999998743 2
Q ss_pred -EEEEEeCCCeEEEEecc
Q 003423 270 -KLVSVSDDRSARIWEVR 286 (821)
Q Consensus 270 -~l~s~s~Dg~i~iwd~~ 286 (821)
.|++++-.|.+.+|++.
T Consensus 229 v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 229 VKVVATDISGEVWTFKIK 246 (717)
T ss_pred eEEEEEeccCcEEEEEEE
Confidence 78889999999998883
No 410
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=85.77 E-value=49 Score=34.59 Aligned_cols=91 Identities=12% Similarity=0.049 Sum_probs=44.5
Q ss_pred CcceEEeec-C--CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCC
Q 003423 34 SLPFLLAGS-G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSP 110 (821)
Q Consensus 34 ~~~~l~~g~-~--~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~ 110 (821)
+.++|.++. + ..+.+.|+++++..+-... .+....+..+++.. ..++.+..++.|+-.|+.+.+
T Consensus 47 G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg-~g~~~~g~~~s~~~----------~~~~Yv~~~~~l~~vdL~T~e-- 113 (386)
T PF14583_consen 47 GRKLLFASDFDGNRNLYLLDLATGEITQLTDG-PGDNTFGGFLSPDD----------RALYYVKNGRSLRRVDLDTLE-- 113 (386)
T ss_dssp S-EEEEEE-TTSS-EEEEEETTT-EEEE---S-S-B-TTT-EE-TTS----------SEEEEEETTTEEEEEETTT----
T ss_pred CCEEEEEeccCCCcceEEEEcccCEEEECccC-CCCCccceEEecCC----------CeEEEEECCCeEEEEECCcCc--
Confidence 457777766 3 5899999999987654443 22233455555331 234455667788777776432
Q ss_pred CCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEE
Q 003423 111 NSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (821)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~ 151 (821)
....+.-..+++-...|... .++..++
T Consensus 114 -------------~~~vy~~p~~~~g~gt~v~n-~d~t~~~ 140 (386)
T PF14583_consen 114 -------------ERVVYEVPDDWKGYGTWVAN-SDCTKLV 140 (386)
T ss_dssp -------------EEEEEE--TTEEEEEEEEE--TTSSEEE
T ss_pred -------------EEEEEECCcccccccceeeC-CCccEEE
Confidence 22333344667766777641 1444443
No 411
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.37 E-value=12 Score=44.60 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=49.9
Q ss_pred ccceeEEEEEEc-CCEEEEEeCCCeEEEEcC--C---C---c-e----------------eeEeecccCCCeEEEEEecC
Q 003423 306 GHNARVWDCCLT-DSFIITAGEDCTCRVWGS--D---G---K-Q----------------LKMIKEHIGRGIWRCLYDSL 359 (821)
Q Consensus 306 ~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~--~---~---~-~----------------~~~~~~h~~~~i~~l~~~~~ 359 (821)
.....|.++... +..++-+|.|| .+|.+ + | + + +-.+.+....+|..++++..
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 335667888865 56777777888 66665 1 1 1 0 11222122337999999998
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 003423 360 SSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 360 ~~~l~tg~~dg~I~iwd~~~ 379 (821)
.+.+++-+..|+|..|++.+
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 89999999999999999955
No 412
>PHA03098 kelch-like protein; Provisional
Probab=85.03 E-value=33 Score=38.62 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=15.3
Q ss_pred CCCEEEEEECCC------cEEEEEccCCce
Q 003423 146 GNRSLAIGCSDN------SIRVWDISNSSI 169 (821)
Q Consensus 146 ~~~~l~t~~~d~------~i~iwd~~~~~~ 169 (821)
++..++.|+.++ .+..||..+.+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW 323 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCee
Confidence 566667776432 567788776654
No 413
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=84.81 E-value=0.68 Score=51.79 Aligned_cols=123 Identities=13% Similarity=0.060 Sum_probs=71.0
Q ss_pred eccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEcc--CCceeEE----EccCcceeEEEEeeccCCccCeEEEEEe
Q 003423 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS--NSSIILE----VHSPERCLLYSMKLWGDNLEALRIASGT 200 (821)
Q Consensus 127 ~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~--~~~~~~~----~~~~~~~~~~s~~~~~~s~~~~~l~sg~ 200 (821)
-+++..+.|.++.|-.. +-..++ -.-|.+.|||+. .|+...+ ...+....+--+.+.+.-.+..++..+-
T Consensus 127 l~kgf~G~v~dl~fah~--~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~ 202 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHT--KCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGL 202 (1283)
T ss_pred HHhcCCCCccccccccc--CChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeecc
Confidence 35677788889998541 111222 233678899876 4544322 2222222111122222235667888888
Q ss_pred eCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEE-----------EcCCCC
Q 003423 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIE-----------WSSCGS 269 (821)
Q Consensus 201 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~-----------~s~~~~ 269 (821)
.+++|++..+... .. ..+.+|...+..++ .+|||.
T Consensus 203 ~~~~i~lL~~~ra-------------------------------~~---~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt 248 (1283)
T KOG1916|consen 203 KGGEIRLLNINRA-------------------------------LR---SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT 248 (1283)
T ss_pred CCCceeEeeechH-------------------------------HH---HHHHhcCCCcccHHHHhhchhhheeeCCCCc
Confidence 8899888766511 00 11223444433322 689999
Q ss_pred EEEEEeCCCeEEEEeccc
Q 003423 270 KLVSVSDDRSARIWEVRA 287 (821)
Q Consensus 270 ~l~s~s~Dg~i~iwd~~~ 287 (821)
.++.++.||.++.|.+.-
T Consensus 249 v~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 249 VFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred EEEEeecCCccceeeeee
Confidence 999999999999998754
No 414
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.40 E-value=57 Score=34.20 Aligned_cols=131 Identities=15% Similarity=0.130 Sum_probs=74.7
Q ss_pred eeeeEEeecC-CC-eEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCC
Q 003423 524 LLGTYWCKSL-GH-RFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLR 601 (821)
Q Consensus 524 ~~~~~~~~~~-~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~d 601 (821)
++++.+..++ ++ -+++..+.+|.+..|.+..... .....+++..|.. ...+-.+.......+|..|-++
T Consensus 158 ~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~-------g~v~~~lVR~f~~--~sQ~EGCVVDDe~g~LYvgEE~ 228 (381)
T PF02333_consen 158 PYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGD-------GKVSATLVREFKV--GSQPEGCVVDDETGRLYVGEED 228 (381)
T ss_dssp EEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TT-------SSEEEEEEEEEE---SS-EEEEEEETTTTEEEEEETT
T ss_pred ceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCC-------CcEeeEEEEEecC--CCcceEEEEecccCCEEEecCc
Confidence 3444443343 33 4677888999999998864321 1123366777733 3357888888888899999999
Q ss_pred CcEEEEecCcccccccccccccccCcccccccccCCcceEEEEEEecCCCceEEEEecC-CCeEEEEEeec
Q 003423 602 GNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGG-DGCICYLEYDK 671 (821)
Q Consensus 602 G~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~-Dg~i~iw~~~~ 671 (821)
--|.-|+.+... . .....+....+.|-..-|-.|+.....+...||+.++. |+++.+|+-+.
T Consensus 229 ~GIW~y~Aep~~-------~-~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 229 VGIWRYDAEPEG-------G-NDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp TEEEEEESSCCC---------S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred cEEEEEecCCCC-------C-CcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 777777665221 0 01111111212222346788888765455566655555 88999999865
No 415
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=84.33 E-value=61 Score=34.50 Aligned_cols=196 Identities=10% Similarity=0.057 Sum_probs=113.3
Q ss_pred EEEEEEeecCCCCC-EEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEee---CCEEEEEEc
Q 003423 135 VFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI---YNEIIVWKV 210 (821)
Q Consensus 135 I~~~~~~~~~~~~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~---dg~i~vwd~ 210 (821)
-..+++++ .++ ..++...++.|.+.|..+............ ...+.+ ++++..+..+.. ++.+.+.|.
T Consensus 76 p~~i~v~~---~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~--P~~~~~---~~~~~~vYV~n~~~~~~~vsvid~ 147 (381)
T COG3391 76 PAGVAVNP---AGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLG--PVGLAV---DPDGKYVYVANAGNGNNTVSVIDA 147 (381)
T ss_pred ccceeeCC---CCCeEEEecCCCCeEEEEcCcccceeeEeeeccC--CceEEE---CCCCCEEEEEecccCCceEEEEeC
Confidence 44577777 666 445555568999999877777666543332 222333 456655555544 577777776
Q ss_pred ccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEecccCc
Q 003423 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV-SDDRSARIWEVRAEY 289 (821)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~-s~Dg~i~iwd~~~~~ 289 (821)
. +.........-..+ ..++++|+|+.+..+ ..++.|.+.|.....
T Consensus 148 ~---------------------------------t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~ 193 (381)
T COG3391 148 A---------------------------------TNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS 193 (381)
T ss_pred C---------------------------------CCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc
Confidence 6 33333333322233 899999999966554 478999999976654
Q ss_pred ccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCC---CeEEEEcCC-CceeeE-eecccCCCeEEEEEecCCCE
Q 003423 290 WKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSD-GKQLKM-IKEHIGRGIWRCLYDSLSSL 362 (821)
Q Consensus 290 ~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~d---g~i~iwd~~-~~~~~~-~~~h~~~~i~~l~~~~~~~~ 362 (821)
. .+.. ......-...-..+.+. +.+++..... +.+...|.. +..... +..... ....+.++|+|+.
T Consensus 194 v-----~~~~-~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~ 266 (381)
T COG3391 194 V-----VRGS-VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKA 266 (381)
T ss_pred e-----eccc-cccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCE
Confidence 3 1000 00011112222445554 4544444333 588888874 333333 222222 2456789999998
Q ss_pred EEEEeC-CCcEEEEEcCC
Q 003423 363 LVTAGF-DSAIKVHQFQA 379 (821)
Q Consensus 363 l~tg~~-dg~I~iwd~~~ 379 (821)
+.+... .+.+.+.|...
T Consensus 267 ~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 267 AYVANSQGGTVSVIDGAT 284 (381)
T ss_pred EEEEecCCCeEEEEeCCC
Confidence 888744 47787777744
No 416
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=83.85 E-value=52 Score=35.48 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=68.0
Q ss_pred EEEecCCCcEEEEEEcCCCCEEEEEe---CC-CeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC---CEEE
Q 003423 250 FRLVGHEGSIFRIEWSSCGSKLVSVS---DD-RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFII 322 (821)
Q Consensus 250 ~~~~~h~~~I~~l~~s~~~~~l~s~s---~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~---~~l~ 322 (821)
+.+..-...+..-+|+|+++.++-.+ .. ..+.++++.+++. ... ..+.++ -..-.|++ ..++
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~-----~~i---~~~~g~---~~~P~fspDG~~l~f 254 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR-----PVI---LNFNGN---NGAPAFSPDGSKLAF 254 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc-----cee---eccCCc---cCCccCCCCCCEEEE
Confidence 33344445677788999998764432 22 3588999998765 211 122222 23345653 4566
Q ss_pred EEeCCCeEEEE--cCCCceeeEeecccCCCeEEEEEecCCCEEEEE-eCCCcEEEEEc
Q 003423 323 TAGEDCTCRVW--GSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA-GFDSAIKVHQF 377 (821)
Q Consensus 323 s~~~dg~i~iw--d~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg-~~dg~I~iwd~ 377 (821)
+...||...+| |+.++.+..+....+ .-+.=.|+|+|+.++-. +..|.-.+|-+
T Consensus 255 ~~~rdg~~~iy~~dl~~~~~~~Lt~~~g-i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~ 311 (425)
T COG0823 255 SSSRDGSPDIYLMDLDGKNLPRLTNGFG-INTSPSWSPDGSKIVFTSDRGGRPQIYLY 311 (425)
T ss_pred EECCCCCccEEEEcCCCCcceecccCCc-cccCccCCCCCCEEEEEeCCCCCcceEEE
Confidence 77777776665 456666666554444 23356789999877554 45565555544
No 417
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.60 E-value=20 Score=37.55 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=66.3
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEE
Q 003423 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVW 333 (821)
Q Consensus 254 ~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iw 333 (821)
..+|+|.++.|++|.+.||.--.|.+|.+.+....+. ..... ......+..|...+|..+.=+.--.+.-+-+|
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~-----~l~~~-~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y 137 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS-----QLEYT-QECKTKNANILGFCWTSSTEIAFITDQGIEFY 137 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCch-----hhHHH-HHhccCcceeEEEEEecCeeEEEEecCCeEEE
Confidence 3567999999999999999999999999998854332 11000 12233345578888874332222233345556
Q ss_pred cC--CCceeeEeecccCCCeEEEEEecCCCEEEE
Q 003423 334 GS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (821)
Q Consensus 334 d~--~~~~~~~~~~h~~~~i~~l~~~~~~~~l~t 365 (821)
.. ..+.++..+.|.. +|.--.|+++.+.++-
T Consensus 138 ~v~pekrslRlVks~~~-nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 138 QVLPEKRSLRLVKSHNL-NVNWYMYCPETAVILL 170 (657)
T ss_pred EEchhhhhhhhhhhccc-CccEEEEccccceEee
Confidence 55 4455566666666 5766777887765433
No 418
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=82.36 E-value=32 Score=29.74 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=62.9
Q ss_pred CeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeec-----CCCEEEEEcCCCcEEEEec
Q 003423 535 HRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASF-----EDEVLFCGDLRGNLVLFPL 609 (821)
Q Consensus 535 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-----~~~~L~sgs~dG~i~iw~~ 609 (821)
...|+++..-|+|.|++.......... ....+. . -.....|++++--+ +...|+.|+.. +|..||+
T Consensus 10 ~pcL~~aT~~gKV~IH~ph~~~~~~~~---~~~~i~---~--LNin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV 80 (136)
T PF14781_consen 10 HPCLACATTGGKVFIHNPHERGQRTGR---QDSDIS---F--LNINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDV 80 (136)
T ss_pred ceeEEEEecCCEEEEECCCcccccccc---ccCcee---E--EECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEc
Confidence 356888888999999987655321110 111111 1 12356688887654 35688888874 8999999
Q ss_pred CcccccccccccccccCcccccccccCCcceEEEEEEecCC-CceEEEEecCCCeEEEEEee
Q 003423 610 LRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRS-NQTEIRSTGGDGCICYLEYD 670 (821)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~-~~~~l~t~g~Dg~i~iw~~~ 670 (821)
.++. ..|.. --.++|++|.+-.... ....++.+| ...|.=|+.+
T Consensus 81 ~~N~---------------d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~ 125 (136)
T PF14781_consen 81 ENNS---------------DLFYK-EVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYE 125 (136)
T ss_pred ccCc---------------hhhhh-hCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCC
Confidence 8651 12211 1136888888765433 334444444 4444444443
No 419
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=81.81 E-value=33 Score=29.61 Aligned_cols=107 Identities=10% Similarity=0.155 Sum_probs=62.3
Q ss_pred eEEeecCCeEEEEECCCC--------eeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecC
Q 003423 37 FLLAGSGSQVLLYDLEAG--------TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFEL 108 (821)
Q Consensus 37 ~l~~g~~~~i~iwd~~t~--------~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~ 108 (821)
|.++...+.|.|++.... ..+..+.. +..|.+++-.+..-.... -.|+++....+..||+....
T Consensus 13 L~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--n~~italaaG~l~~~~~~------D~LliGt~t~llaYDV~~N~ 84 (136)
T PF14781_consen 13 LACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--NQEITALAAGRLKPDDGR------DCLLIGTQTSLLAYDVENNS 84 (136)
T ss_pred EEEEecCCEEEEECCCccccccccccCceeEEEC--CCceEEEEEEecCCCCCc------CEEEEeccceEEEEEcccCc
Confidence 555566899999998643 23444543 335888876543211111 36777778999999998543
Q ss_pred CCCCCCCCccccccceeeeccCCCCcEEEEEEeecCC-CCCEEEEEECCCcEEEEEccCCc
Q 003423 109 SPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN-GNRSLAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~-~~~~l~t~~~d~~i~iwd~~~~~ 168 (821)
. .-.+.-.+.|.++.+-.... ...++++| .+..|.-+|.+-.+
T Consensus 85 --------------d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e 128 (136)
T PF14781_consen 85 --------------D--LFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNE 128 (136)
T ss_pred --------------h--hhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcE
Confidence 1 11223447788888754222 23344444 46667777754433
No 420
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=81.70 E-value=0.17 Score=52.47 Aligned_cols=153 Identities=20% Similarity=0.280 Sum_probs=97.8
Q ss_pred EEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCc
Q 003423 136 FDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHV 215 (821)
Q Consensus 136 ~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~ 215 (821)
....|-| .+.-++.++.+..+..||- .++...++..+..++- +++ .-.-...++.+-..+.+.+||+..+.
T Consensus 38 i~~~w~~---e~~nlavaca~tiv~~YD~-agq~~le~n~tg~ald--m~w--DkegdvlavlAek~~piylwd~n~ey- 108 (615)
T KOG2247|consen 38 IIHRWRP---EGHNLAVACANTIVIYYDK-AGQVILELNPTGKALD--MAW--DKEGDVLAVLAEKTGPIYLWDVNSEY- 108 (615)
T ss_pred ceeeEec---CCCceehhhhhhHHHhhhh-hcceecccCCchhHhh--hhh--ccccchhhhhhhcCCCeeechhhhhh-
Confidence 3455666 5555888888888999984 4455444444444322 221 11123344556677999999998210
Q ss_pred ccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEe-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCC
Q 003423 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (821)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 294 (821)
..+. .+. .|..+. +.|++....++.+-..+.++|++..+.+.
T Consensus 109 -----------------------------tqqL--E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~---- 151 (615)
T KOG2247|consen 109 -----------------------------TQQL--ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRR---- 151 (615)
T ss_pred -----------------------------HHHH--hccCcchHHH--HhhccCCccccccccccceEEEeccchhh----
Confidence 1111 111 122322 77888888888888889999999988665
Q ss_pred CceeeeceEEec-cceeEEEEEEc-CCEEEEEeCCCeEEEEcCCCceee
Q 003423 295 SIEEVGSSVLYG-HNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLK 341 (821)
Q Consensus 295 ~~~~~~~~~~~~-h~~~i~~v~~~-~~~l~s~~~dg~i~iwd~~~~~~~ 341 (821)
....| |..++.++++. .++.+.++.|..+.+-...++...
T Consensus 152 -------iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~qegeta~ 193 (615)
T KOG2247|consen 152 -------IIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVTTQEGETAS 193 (615)
T ss_pred -------hhhhcccccceeEEEecccceeeecCcHHHHHHhhhccceee
Confidence 35556 99999999998 688999998887766555444333
No 421
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=81.43 E-value=80 Score=33.71 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=82.6
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEEEc
Q 003423 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWG 334 (821)
Q Consensus 256 ~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iwd 334 (821)
.+..+.+..++++.+++.+..-..++-||-..... + ..-......+.++.+. +..++..+.+|.+..=+
T Consensus 238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W------~----~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~ 307 (398)
T PLN00033 238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYW------Q----PHNRASARRIQNMGWRADGGLWLLTRGGGLYVSK 307 (398)
T ss_pred ccceeeEEEcCCCCEEEEECCccEEEecCCCCcce------E----EecCCCccceeeeeEcCCCCEEEEeCCceEEEec
Confidence 34466677888888777665533334454332110 0 1222234557788776 45566666778765544
Q ss_pred CCCc-----eeeEeecc-cCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCc
Q 003423 335 SDGK-----QLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNF 408 (821)
Q Consensus 335 ~~~~-----~~~~~~~h-~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (821)
-.++ ........ ....+..+.+.+++..+ .+|..|.+....-.++.-+...
T Consensus 308 d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~-a~G~~G~v~~s~D~G~tW~~~~---------------------- 364 (398)
T PLN00033 308 GTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAW-AAGGSGILLRSTDGGKSWKRDK---------------------- 364 (398)
T ss_pred CCCCcccccceeecccCCCCcceEEEEEcCCCcEE-EEECCCcEEEeCCCCcceeEcc----------------------
Confidence 4443 22222221 22248889988776654 5556776665543221100000
Q ss_pred ccceeccCCCCcceEEEEeecCCeEEEEecCCcEEE
Q 003423 409 SEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYH 444 (821)
Q Consensus 409 ~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~ 444 (821)
....-...+..+.|.++++.++...+|.+..
T Consensus 365 -----~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~ 395 (398)
T PLN00033 365 -----GADNIAANLYSVKFFDDKKGFVLGNDGVLLR 395 (398)
T ss_pred -----ccCCCCcceeEEEEcCCCceEEEeCCcEEEE
Confidence 0000123367888888889999999998764
No 422
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=81.39 E-value=74 Score=33.32 Aligned_cols=32 Identities=22% Similarity=0.028 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEecccCcc
Q 003423 259 IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (821)
Q Consensus 259 I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 290 (821)
..+...+|+.+.++-....+.|+--|+.+.+.
T Consensus 83 ~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 83 TFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred ccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence 44567788888887666678888888888654
No 423
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=80.76 E-value=23 Score=37.73 Aligned_cols=53 Identities=15% Similarity=0.153 Sum_probs=40.7
Q ss_pred cceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCc
Q 003423 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (821)
Q Consensus 122 ~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~ 177 (821)
+.....+......+.+++.+| ++++.|+...=|.|.++|+.++..++-.++..
T Consensus 297 l~~r~~l~D~~R~~~~i~~sP---~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR 349 (415)
T PF14655_consen 297 LPMRFGLPDSKREGESICLSP---SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR 349 (415)
T ss_pred cceEEeeccCCceEEEEEECC---CCCEEEEEcCCCcEEEEECCCChhhhhhccCc
Confidence 344555665666799999999 99888888777899999999988776665443
No 424
>PHA02790 Kelch-like protein; Provisional
Probab=80.75 E-value=78 Score=35.00 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=15.2
Q ss_pred CCCEEEEEeCCC---eEEEEecccCcc
Q 003423 267 CGSKLVSVSDDR---SARIWEVRAEYW 290 (821)
Q Consensus 267 ~~~~l~s~s~Dg---~i~iwd~~~~~~ 290 (821)
+|+..+.||.++ .+..||..+...
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 566667666543 466788776544
No 425
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=80.12 E-value=89 Score=33.46 Aligned_cols=157 Identities=12% Similarity=0.184 Sum_probs=93.2
Q ss_pred CcceEEeec-CCeEEEEECCCCe-----eeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeec
Q 003423 34 SLPFLLAGS-GSQVLLYDLEAGT-----LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFE 107 (821)
Q Consensus 34 ~~~~l~~g~-~~~i~iwd~~t~~-----~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~ 107 (821)
+...++.|+ .|.|+||+...++ ++-+.+ -..+|-++....- ..+++ ...+++---+.+.+|.+...
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~--l~~PILqv~~G~F--~s~~~----~~~LaVLhP~kl~vY~v~~~ 107 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ--LKDPILQVECGKF--VSGSE----DLQLAVLHPRKLSVYSVSLV 107 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe--cCCcEEEEEeccc--cCCCC----cceEEEecCCEEEEEEEEec
Confidence 356777776 8999999996543 232222 2457888886532 11122 46889999999999999644
Q ss_pred CCCCCCCCCccc--cccceeeeccCCCCcEEEEEEeecCC-C-CCEEEEEECCCcEEEEEccCCceeEEEc--cCcceeE
Q 003423 108 LSPNSQYQPETC--VNLSLVQSLPRLSHWVFDVCFLKVCN-G-NRSLAIGCSDNSIRVWDISNSSIILEVH--SPERCLL 181 (821)
Q Consensus 108 ~~~~~~~~~~~~--~~~~~~~~~~~h~~~I~~~~~~~~~~-~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~ 181 (821)
.... ..+.. +.....+.++ .....++.-|... . ...+++=+-||.+.+++-+.-.....+. -..+++.
T Consensus 108 ~g~~---~~g~~~~L~~~yeh~l~---~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~ 181 (418)
T PF14727_consen 108 DGTV---EHGNQYQLELIYEHSLQ---RTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLC 181 (418)
T ss_pred CCCc---ccCcEEEEEEEEEEecc---cceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeE
Confidence 3110 00011 1222233333 2334444444211 2 3578888999999999965443333332 2234556
Q ss_pred EEEeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 182 YSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 182 ~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
|+ +....+++++.+..+..|+..
T Consensus 182 Y~-------~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 182 YC-------PRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred Ee-------ecCCEEEEecCceeEEEecHH
Confidence 65 455678888888899999876
No 426
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=79.80 E-value=81 Score=32.80 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=35.0
Q ss_pred EEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce---eEEEc---cCcceeEEEEeeccCCccCeEEEE
Q 003423 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI---ILEVH---SPERCLLYSMKLWGDNLEALRIAS 198 (821)
Q Consensus 135 I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~---~~~~~---~~~~~~~~s~~~~~~s~~~~~l~s 198 (821)
.++|+|.| ++++++ +...|.|++++ .++.. +..+. ......+..+++++.-+...+|..
T Consensus 4 P~~~a~~p---dG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv 68 (331)
T PF07995_consen 4 PRSMAFLP---DGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYV 68 (331)
T ss_dssp EEEEEEET---TSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEE
T ss_pred ceEEEEeC---CCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEE
Confidence 57899999 887666 56799999999 44443 22331 223345677888664333334433
No 427
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=79.50 E-value=8 Score=36.40 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=48.3
Q ss_pred EeeccccEEeEEeccccCCC-CCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEE
Q 003423 61 QVFHGIRLHGISCNFINCTE-GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (821)
Q Consensus 61 ~~~~~~~i~~i~~~~~~~~~-~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~ 139 (821)
..|.++.|..+..-|..+.. ++| .++++.+++.|.+|++..+. .+....+..- +.|..+.
T Consensus 6 H~F~sQ~v~~~~~EP~~~c~~g~d-----~Lfva~~g~~Vev~~l~~~~-------------~~~~~~F~Tv-~~V~~l~ 66 (215)
T PF14761_consen 6 HPFGSQNVVPCEQEPTAVCCGGPD-----ALFVAASGCKVEVYDLEQEE-------------CPLLCTFSTV-GRVLQLV 66 (215)
T ss_pred cccCCceeeccccCcceeeccCCc-----eEEEEcCCCEEEEEEcccCC-------------CceeEEEcch-hheeEEE
Confidence 34445555555544443222 233 67777889999999998432 3455666544 7899999
Q ss_pred EeecCCCCCEEEEEE
Q 003423 140 FLKVCNGNRSLAIGC 154 (821)
Q Consensus 140 ~~~~~~~~~~l~t~~ 154 (821)
++. .|++|+|=-
T Consensus 67 y~~---~GDYlvTlE 78 (215)
T PF14761_consen 67 YSE---AGDYLVTLE 78 (215)
T ss_pred ecc---ccceEEEEE
Confidence 999 999999853
No 428
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.14 E-value=71 Score=31.78 Aligned_cols=180 Identities=14% Similarity=0.100 Sum_probs=95.4
Q ss_pred EeccceeEEEEEEcC--CEEEEEeCCCeEEEE-cCCCceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCc
Q 003423 304 LYGHNARVWDCCLTD--SFIITAGEDCTCRVW-GSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (821)
Q Consensus 304 ~~~h~~~i~~v~~~~--~~l~s~~~dg~i~iw-d~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~ 380 (821)
..|-...+.++.|++ +.|++......-.+| +.+|+.++++....-.....+.+..+++++++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 455566699999994 555555555444444 45899998875432223567888888898888889999999888432
Q ss_pred CCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCe-EEEEecCCcEEEEEecCCCcceeeEee
Q 003423 381 LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIATNHGYLYHTKLCDMDSVNWNKIL 459 (821)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~-~l~~~~~g~~~~~~i~~~~~~~~~~~~ 459 (821)
..+.... +..-++......+.....+|+.+.++ ++++-...-+..+.+..........+.
T Consensus 161 -----------------t~~~~~~--~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~ 221 (316)
T COG3204 161 -----------------TTVISAK--VQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHAS 221 (316)
T ss_pred -----------------ccEEecc--ceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccc
Confidence 1111111 00111111222245578899999664 444444333332222211111000111
Q ss_pred ecc-CCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCC
Q 003423 460 QVS-EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGD 504 (821)
Q Consensus 460 ~~~-~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~ 504 (821)
..+ ....++..+++. ..+....+.+++.+..++.+.-.+....
T Consensus 222 ~~~~~~~~~f~~DvSg--l~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 222 LDPTADRDLFVLDVSG--LEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCcccccceEeecccc--ceecCCCCcEEEEecCCceEEEEecCCC
Confidence 111 111222222211 1122345678888888888877776553
No 429
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=78.33 E-value=1.6e+02 Score=35.43 Aligned_cols=172 Identities=10% Similarity=0.134 Sum_probs=91.2
Q ss_pred CCcEEEEecC---------CccEEEEEecC-----CCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEE
Q 003423 483 IDDWVALGDG---------KGNMTIVRVVG-----DVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLK 548 (821)
Q Consensus 483 ~~~~l~~g~~---------~g~i~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 548 (821)
...++++|.. .|.+.||++-. ++...+.+.+..+.......+.. +..-.|.++ ++ ...+|.
T Consensus 1045 ~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsa---vceV~G~l~-~~-~GqKI~ 1119 (1366)
T KOG1896|consen 1045 KKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSA---VCEVRGHLL-SS-QGQKII 1119 (1366)
T ss_pred CcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEE---EEEeccEEE-Ec-cCcEEE
Confidence 3567887764 48999999754 21122223333333322221111 111233433 33 345799
Q ss_pred EeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcc
Q 003423 549 LWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPL 628 (821)
Q Consensus 549 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~ 628 (821)
+|++++.... .-++-+ .-++--.....-.++|..|+--..|.+..+... +.+...+
T Consensus 1120 v~~l~r~~~l-----------igVaFi----D~~~yv~s~~~vknlIl~gDV~ksisfl~fqee---------p~rlsL~ 1175 (1366)
T KOG1896|consen 1120 VRKLDRDSEL-----------IGVAFI----DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEE---------PYRLSLL 1175 (1366)
T ss_pred EEEeccCCcc-----------eeeEEe----ccceeEEehhhhhhheehhhhhhceEEEEEccC---------ceEEEEe
Confidence 9999554210 111111 111222222233679999999999998876632 1122111
Q ss_pred cccccccCCcceEEEEEEecCCCceEEEEecCCCeEEEEEeecCCceeeeeeeeeeeeee
Q 003423 629 NYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELS 688 (821)
Q Consensus 629 ~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 688 (821)
.. ....-.+.++.|.-. .++-.++.+.+|+.|++|-+.+.... .+.|...+++..
T Consensus 1176 sr---d~~~l~v~s~EFLVd-g~~L~flvsDa~rNi~vy~Y~Pe~~e-S~~G~RLv~rad 1230 (1366)
T KOG1896|consen 1176 SR---DFEPLNVYSTEFLVD-GSNLSFLVSDADRNIHVYMYAPENIE-SLSGQRLVRRAD 1230 (1366)
T ss_pred ec---CCchhhceeeeeEEc-CCeeEEEEEcCCCcEEEEEeCCCCcc-ccCcceeeeeee
Confidence 11 112346788877742 23467999999999999999765332 344565565544
No 430
>PHA03098 kelch-like protein; Provisional
Probab=78.21 E-value=68 Score=36.12 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=15.9
Q ss_pred CCCEEEEEECC-----CcEEEEEccCCce
Q 003423 146 GNRSLAIGCSD-----NSIRVWDISNSSI 169 (821)
Q Consensus 146 ~~~~l~t~~~d-----~~i~iwd~~~~~~ 169 (821)
++...+.|+.+ +.+..||..+.+-
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 66777777754 3477788776543
No 431
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=78.04 E-value=1.1e+02 Score=33.14 Aligned_cols=134 Identities=18% Similarity=0.182 Sum_probs=69.2
Q ss_pred eeEEEEEeccCCCCCCcceEEeec--C----CeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEE
Q 003423 19 EISALCFVHLPSHLSSLPFLLAGS--G----SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (821)
Q Consensus 19 ~Vt~l~~~~~p~~~~~~~~l~~g~--~----~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~ 92 (821)
.+...++| || ++++|-+. + ..|+|+|+.+|+.+... +....-.++.|.+++ + .++.
T Consensus 125 ~~~~~~~S--pd----g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--i~~~~~~~~~W~~d~-------~---~~~y 186 (414)
T PF02897_consen 125 SLGGFSVS--PD----GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--IENPKFSSVSWSDDG-------K---GFFY 186 (414)
T ss_dssp EEEEEEET--TT----SSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--EEEEESEEEEECTTS-------S---EEEE
T ss_pred EeeeeeEC--CC----CCEEEEEecCCCCceEEEEEEECCCCcCcCCc--ccccccceEEEeCCC-------C---EEEE
Confidence 44567788 98 66666543 2 47999999999876532 122122237887542 2 3333
Q ss_pred EE-cC--C------e--EEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC---C-C
Q 003423 93 LF-GE--K------R--VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---D-N 157 (821)
Q Consensus 93 ~~-g~--~------~--v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~---d-~ 157 (821)
+. .. . . |..|++.... . .-.++..-.....+...+..++ ++++|+.... + .
T Consensus 187 ~~~~~~~~~~~~~~~~~v~~~~~gt~~--~---------~d~lvfe~~~~~~~~~~~~~s~---d~~~l~i~~~~~~~~s 252 (414)
T PF02897_consen 187 TRFDEDQRTSDSGYPRQVYRHKLGTPQ--S---------EDELVFEEPDEPFWFVSVSRSK---DGRYLFISSSSGTSES 252 (414)
T ss_dssp EECSTTTSS-CCGCCEEEEEEETTS-G--G---------G-EEEEC-TTCTTSEEEEEE-T---TSSEEEEEEESSSSEE
T ss_pred EEeCcccccccCCCCcEEEEEECCCCh--H---------hCeeEEeecCCCcEEEEEEecC---cccEEEEEEEccccCC
Confidence 33 22 1 3 4444444321 0 0112333333333467888888 9998775433 2 3
Q ss_pred cEEEEEccCC----ceeEEEccCcceeEEEE
Q 003423 158 SIRVWDISNS----SIILEVHSPERCLLYSM 184 (821)
Q Consensus 158 ~i~iwd~~~~----~~~~~~~~~~~~~~~s~ 184 (821)
.+.+.|...+ .....+..+.....+.+
T Consensus 253 ~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 253 EVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred eEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 4777777764 23444444444444443
No 432
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=77.47 E-value=47 Score=35.46 Aligned_cols=124 Identities=15% Similarity=0.080 Sum_probs=71.6
Q ss_pred ceeeEEEEecCCCcEEEEEEcCCC--------CEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEE
Q 003423 245 TAVNLFRLVGHEGSIFRIEWSSCG--------SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL 316 (821)
Q Consensus 245 ~~~~~~~~~~h~~~I~~l~~s~~~--------~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~ 316 (821)
.++.+.+..-|... -+.|.|+. +.|+-.|. ..|.--|.+-... .+..... .-+.......+..-
T Consensus 499 rGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~-~svFrIDPR~~gN----Ki~v~es-KdY~tKn~Fss~~t 570 (776)
T COG5167 499 RGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSD-YSVFRIDPRARGN----KIKVVES-KDYKTKNKFSSGMT 570 (776)
T ss_pred cceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecc-cceEEecccccCC----ceeeeee-hhcccccccccccc
Confidence 55666666666665 46777743 34554444 4444445443321 0111000 00111111222222
Q ss_pred c-CCEEEEEeCCCeEEEEcCCCceeeE-eecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 317 T-DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 317 ~-~~~l~s~~~dg~i~iwd~~~~~~~~-~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
. ..+++.++..|.|++||--|...++ +.+.. ..|..+..+.+|.++++.+. ..+.+.|+.
T Consensus 571 TesGyIa~as~kGDirLyDRig~rAKtalP~lG-~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 571 TESGYIAAASRKGDIRLYDRIGKRAKTALPGLG-DAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ccCceEEEecCCCceeeehhhcchhhhcCcccc-cceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 2 5899999999999999985544444 44443 47999999999998887775 467777774
No 433
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=76.81 E-value=41 Score=35.89 Aligned_cols=146 Identities=18% Similarity=0.145 Sum_probs=84.3
Q ss_pred eEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecC-----CCCCEEEEEECCCcEEEEE
Q 003423 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC-----NGNRSLAIGCSDNSIRVWD 163 (821)
Q Consensus 89 ~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~-----~~~~~l~t~~~d~~i~iwd 163 (821)
.++..-|+..=++|.++.+. ++.+....-|.+- -+.|.|.. .+.+. ++|-.+..|.-.|
T Consensus 480 sli~~dg~~~~kLykmDIEr-------------GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqt-lvGlS~~svFrID 543 (776)
T COG5167 480 SLIYLDGGERDKLYKMDIER-------------GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQT-LVGLSDYSVFRID 543 (776)
T ss_pred ceEEecCCCcccceeeeccc-------------ceeeeEeecCCcc--eeecCCchhHHhcCccce-EEeecccceEEec
Confidence 46666666666666666543 4566666666664 56777611 01223 3465566665556
Q ss_pred cc-CCceeE--EEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeec
Q 003423 164 IS-NSSIIL--EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (821)
Q Consensus 164 ~~-~~~~~~--~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (821)
.+ .|..+. +.+...+..-++... .....+||+|+..|.|++||--
T Consensus 544 PR~~gNKi~v~esKdY~tKn~Fss~~---tTesGyIa~as~kGDirLyDRi----------------------------- 591 (776)
T COG5167 544 PRARGNKIKVVESKDYKTKNKFSSGM---TTESGYIAAASRKGDIRLYDRI----------------------------- 591 (776)
T ss_pred ccccCCceeeeeehhccccccccccc---cccCceEEEecCCCceeeehhh-----------------------------
Confidence 54 333322 222221111122111 1356699999999999999975
Q ss_pred ccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeccc
Q 003423 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (821)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~ 287 (821)
.......+.+-...|..|..+.+|+++++.+. ..+.+-|++-
T Consensus 592 ----g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 592 ----GKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred ----cchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 22223334566678899999999987655554 4677777653
No 434
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=76.78 E-value=71 Score=30.51 Aligned_cols=96 Identities=7% Similarity=-0.041 Sum_probs=54.5
Q ss_pred CCCCCCCcEEEEecCCccEEEEE--ecCCCC-CCcceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecC
Q 003423 478 KYPCGIDDWVALGDGKGNMTIVR--VVGDVH-TPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCD 554 (821)
Q Consensus 478 ~~s~~~~~~l~~g~~~g~i~i~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 554 (821)
.+......+..+-+.+-.|.-|+ ..++.. .++.++.+.-+...+. ...--++...+|.+.++.-..|+|...|..+
T Consensus 164 ~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~-~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t 242 (310)
T KOG4499|consen 164 AWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES-LEPDGMTIDTEGNLYVATFNGGTVQKVDPTT 242 (310)
T ss_pred cccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC-CCCCcceEccCCcEEEEEecCcEEEEECCCC
Confidence 33334456667777777886677 445443 2233333322111110 1111133445677877887888899999888
Q ss_pred CCCcccccCCccceeeeeEEEecccCceEEEEEee
Q 003423 555 PFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDAS 589 (821)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 589 (821)
+ +++.++ .-....|+|.+|-
T Consensus 243 G--------------K~L~ei-klPt~qitsccFg 262 (310)
T KOG4499|consen 243 G--------------KILLEI-KLPTPQITSCCFG 262 (310)
T ss_pred C--------------cEEEEE-EcCCCceEEEEec
Confidence 7 455554 2236779999997
No 435
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=76.45 E-value=96 Score=32.82 Aligned_cols=105 Identities=10% Similarity=-0.032 Sum_probs=54.9
Q ss_pred CcEEEEEEcCCCCEEEEEe-----------CCC-eEEEEecccCc-ccCCCCceeeeceEEeccceeEEEEEEcCCEEEE
Q 003423 257 GSIFRIEWSSCGSKLVSVS-----------DDR-SARIWEVRAEY-WKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIIT 323 (821)
Q Consensus 257 ~~I~~l~~s~~~~~l~s~s-----------~Dg-~i~iwd~~~~~-~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s 323 (821)
.....|+|.++|+++++.. ..+ .|.+++-.++. . .... ..+...-.....+++.++-|+.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~-----~d~~--~vfa~~l~~p~Gi~~~~~GlyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGK-----YDKS--NVFAEELSMVTGLAVAVGGVYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC-----ccee--EEeecCCCCccceeEecCCEEE
Confidence 3456799999999877753 223 67666544321 1 1111 1222223345778876322555
Q ss_pred EeCCCeEEEEcCCC------ceee---Eeecc---cCCCeEEEEEecCCCEEEEEeC
Q 003423 324 AGEDCTCRVWGSDG------KQLK---MIKEH---IGRGIWRCLYDSLSSLLVTAGF 368 (821)
Q Consensus 324 ~~~dg~i~iwd~~~------~~~~---~~~~h---~~~~i~~l~~~~~~~~l~tg~~ 368 (821)
+......++.+.++ +... .+... .......+++.|+|.+.++-+.
T Consensus 87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEeccc
Confidence 55555444556532 2111 12221 0113668899999987666553
No 436
>PRK13616 lipoprotein LpqB; Provisional
Probab=76.33 E-value=1.4e+02 Score=33.80 Aligned_cols=151 Identities=13% Similarity=0.142 Sum_probs=75.0
Q ss_pred EEEEEEeecCCCCCEEEEEECC-CcEEEE-----------EccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeC
Q 003423 135 VFDVCFLKVCNGNRSLAIGCSD-NSIRVW-----------DISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (821)
Q Consensus 135 I~~~~~~~~~~~~~~l~t~~~d-~~i~iw-----------d~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~d 202 (821)
.+.-.|+| +|..|++.... ..+++. ++..+...+.+.. .+.++.+ ++|+..+|.-. +
T Consensus 399 ~t~PsWsp---DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g----~Issl~w---SpDG~RiA~i~-~ 467 (591)
T PRK13616 399 LTRPSWSL---DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPG----PISELQL---SRDGVRAAMII-G 467 (591)
T ss_pred CCCceECC---CCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCC----CcCeEEE---CCCCCEEEEEE-C
Confidence 67788999 88888776533 122232 3322222111112 2444444 68999888754 4
Q ss_pred CEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE-ecCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 003423 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (821)
Q Consensus 203 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~ 281 (821)
|+|++=-+... .+ +.........+ .+-...+..+.|..++.++ .+..++...
T Consensus 468 g~v~Va~Vvr~-----~~---------------------G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~ 520 (591)
T PRK13616 468 GKVYLAVVEQT-----ED---------------------GQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHP 520 (591)
T ss_pred CEEEEEEEEeC-----CC---------------------CceeecccEEeecccCCccccceEecCCEEE-EEecCCCCc
Confidence 77776433300 00 00011111112 2233446789999998854 445555555
Q ss_pred EEecccCcccCCCCceeeeceEEec--cceeEEEEEEcCCEEEEEeCCCeEEE
Q 003423 282 IWEVRAEYWKDSDSIEEVGSSVLYG--HNARVWDCCLTDSFIITAGEDCTCRV 332 (821)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~v~~~~~~l~s~~~dg~i~i 332 (821)
+|.+.-... .. ..+.+ ...++.+++-.+..++....++.+.+
T Consensus 521 v~~v~vDG~-----~~----~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 521 VWYVNLDGS-----NS----DALPSRNLSAPVVAVAASPSTVYVTDARAVLQL 564 (591)
T ss_pred eEEEecCCc-----cc----cccCCCCccCceEEEecCCceEEEEcCCceEEe
Confidence 665543322 10 11112 24556666655555666666664443
No 437
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=76.03 E-value=11 Score=24.65 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=21.4
Q ss_pred cceEEeec-CCeEEEEECCCCeeeeEEEe
Q 003423 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQV 62 (821)
Q Consensus 35 ~~~l~~g~-~~~i~iwd~~t~~~~~~~~~ 62 (821)
+.++++.. ++.|.++|..+++.+.++..
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 33444444 68999999999999888876
No 438
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=74.89 E-value=16 Score=38.11 Aligned_cols=252 Identities=10% Similarity=0.107 Sum_probs=117.6
Q ss_pred CCCcEEEEecCCccEEEEEecCCCCCCcceeEEeeccCccceeeeeE--EeecCCCeEEEEECCCCcEEEeeecCCCCcc
Q 003423 482 GIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTY--WCKSLGHRFIFTADPKGRLKLWQLCDPFSSV 559 (821)
Q Consensus 482 ~~~~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 559 (821)
+...+++.|..+|.+.+..-+-....+.....+ .+.......... ....+-..+.++...+....+++.......-
T Consensus 125 ~gqp~~alglsngqv~v~qp~~s~t~p~pg~~F--p~g~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L 202 (733)
T COG4590 125 PGQPWFALGLSNGQVAVVQPQLSHTMPTPGREF--PPGLEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQIL 202 (733)
T ss_pred CCCceEEEeccCCeEEEEeccccccCCCCCccC--CCCCCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhh
Confidence 456899999999999997633211111111111 111100000000 0001112345556666666666655442211
Q ss_pred cccCC-ccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccCCc
Q 003423 560 CYESS-KTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGIS 638 (821)
Q Consensus 560 ~~~~~-~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 638 (821)
..+-+ ....+++.. .-...|..+-..||+++|..-+. ..+.++++.+.....+ +....-. ...+.
T Consensus 203 ~g~~t~q~e~i~~L~----~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r--------kl~~dsp-g~~~~ 268 (733)
T COG4590 203 RGDRTTQQEIIRLLS----VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR--------KLVDDSP-GDSRH 268 (733)
T ss_pred hcccCchhhhhhhcC----CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh--------hhhhcCC-CchHH
Confidence 11111 111112111 12345677888899998877666 6789999876421110 0000001 00112
Q ss_pred ceE-EEEEEecCCCceEEEEecCCCeEEEE-EeecCCceeeeeeeeeeeeeeeeeeeccCC-CccCCCCC-e-EEEeeec
Q 003423 639 TVS-TLSVAKLRSNQTEIRSTGGDGCICYL-EYDKDRESLEFIGMKQVKELSLIQSVSAEN-NSIDLASC-N-YAAGFAS 713 (821)
Q Consensus 639 ~Vt-~i~~~~~~~~~~~l~t~g~Dg~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-l~~g~~~ 713 (821)
.|| ++... .++..++....||-+..| +++++... ..+.++..+ +.+.. ..+-++.+ . +++=...
T Consensus 269 ~Vte~l~lL---~Gg~SLLv~~~dG~vsQWFdvr~~~~p----~l~h~R~f~----l~pa~~~~l~pe~~rkgF~~l~~~ 337 (733)
T COG4590 269 QVTEQLYLL---SGGFSLLVVHEDGLVSQWFDVRRDGQP----HLNHIRNFK----LAPAEVQFLLPETNRKGFYSLYRN 337 (733)
T ss_pred HHHHHHHHH---hCceeEEEEcCCCceeeeeeeecCCCC----cceeeeccc----cCcccceeeccccccceEEEEcCC
Confidence 344 22112 445678999999999888 55554432 111111111 11100 00111111 1 4555566
Q ss_pred ccEEEEECccccEEEEEeeCCCCccceeecCCCCCcceeEEEEeeceEEEEc
Q 003423 714 TDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKANQLWRLR 765 (821)
Q Consensus 714 ~~~~vW~~~~~~~l~~i~cgg~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 765 (821)
+++-++.-+.+..++.-+--.+.---++ .+++..++--+++.+++++
T Consensus 338 G~L~~f~st~~~~lL~~~~~~~~~~~~~-----Sp~~~~Ll~e~~gki~~~~ 384 (733)
T COG4590 338 GTLQSFYSTSEKLLLFERAYQAPQLVAM-----SPNQAYLLSEDQGKIRLAQ 384 (733)
T ss_pred CceeeeecccCcceehhhhhcCcceeee-----CcccchheeecCCceEEEE
Confidence 7777777666555554332222222233 2356667777778888877
No 439
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=74.81 E-value=25 Score=33.93 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=51.7
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCcCC-CcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEEEeecCCeEE
Q 003423 356 YDSLSSLLVTAGFDSAIKVHQFQAFLP-GSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLY 434 (821)
Q Consensus 356 ~~~~~~~l~tg~~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l 434 (821)
+..++.+|++-..+|.+++||+..... ..... -..++.... ... ......|..+.++.+|.-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~S---------i~pll~~~~--~~~-----~~~~~~i~~~~lt~~G~Pi 81 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVS---------IAPLLNSSP--VSD-----KSSSPNITSCSLTSNGVPI 81 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCcc---------HHHHhcccc--ccc-----CCCCCcEEEEEEcCCCCEE
Confidence 445688999999999999999965321 11000 000000000 000 0234568999999999888
Q ss_pred EEecCCcEEEEEecCCCcceeeEeee
Q 003423 435 IATNHGYLYHTKLCDMDSVNWNKILQ 460 (821)
Q Consensus 435 ~~~~~g~~~~~~i~~~~~~~~~~~~~ 460 (821)
+..++|..| .|+..-..|..+.+
T Consensus 82 V~lsng~~y---~y~~~L~~W~~vsd 104 (219)
T PF07569_consen 82 VTLSNGDSY---SYSPDLGCWIRVSD 104 (219)
T ss_pred EEEeCCCEE---EeccccceeEEecc
Confidence 888888877 44544555766543
No 440
>PHA02790 Kelch-like protein; Provisional
Probab=74.28 E-value=1.5e+02 Score=32.88 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=15.9
Q ss_pred CCCEEEEEECC---CcEEEEEccCCce
Q 003423 146 GNRSLAIGCSD---NSIRVWDISNSSI 169 (821)
Q Consensus 146 ~~~~l~t~~~d---~~i~iwd~~~~~~ 169 (821)
+++..+.|+.+ ..+..||..+.+-
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 67777777754 3477888776543
No 441
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=73.42 E-value=1e+02 Score=30.69 Aligned_cols=195 Identities=11% Similarity=0.022 Sum_probs=117.4
Q ss_pred CCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCc-ceeEEEEeeccCCccCeEEEEEeeCCEEEEEEc
Q 003423 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (821)
Q Consensus 132 ~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~ 210 (821)
.+-+.++.++. ++...+..+.-++|.|+.+...-..+..-. ....|.... .+++...+..|.-+.+.|+
T Consensus 86 ~~l~~Dv~vse-----~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v-----sGn~aYVadlddgfLivdv 155 (370)
T COG5276 86 RDLFADVRVSE-----EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV-----SGNYAYVADLDDGFLIVDV 155 (370)
T ss_pred hhhhheeEecc-----cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe-----cCCEEEEeeccCcEEEEEC
Confidence 35677788865 566667777889999998765433332211 134444433 6778888887777788888
Q ss_pred ccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcc
Q 003423 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (821)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 290 (821)
.+ ..+.....+.....+.-..++.| |++-..+..|+-+.|-|+.....
T Consensus 156 sd------------------------------pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~s 203 (370)
T COG5276 156 SD------------------------------PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHS 203 (370)
T ss_pred CC------------------------------CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCC
Confidence 71 11334444444455555667775 56666677889999999998765
Q ss_pred cCCCCceeeeceEEecc---ceeEEEEEEcCCEEEEEeCCCeEEEEcCCCce-eeEeecccCCCeEEE-EEecCCCEEEE
Q 003423 291 KDSDSIEEVGSSVLYGH---NARVWDCCLTDSFIITAGEDCTCRVWGSDGKQ-LKMIKEHIGRGIWRC-LYDSLSSLLVT 365 (821)
Q Consensus 291 ~~~~~~~~~~~~~~~~h---~~~i~~v~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~h~~~~i~~l-~~~~~~~~l~t 365 (821)
. .+.+| ...+.++..++++.+..-.+--+.+-|.++.. ...+.......+-++ .+.-.+++...
T Consensus 204 -----P------vli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yv 272 (370)
T COG5276 204 -----P------VLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYV 272 (370)
T ss_pred -----C------eEEEEEecCCceEEEEecCCeeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeee
Confidence 2 33333 22678888888777766666667777774432 222211111122222 22223566666
Q ss_pred EeCCCcEEEEEcCC
Q 003423 366 AGFDSAIKVHQFQA 379 (821)
Q Consensus 366 g~~dg~I~iwd~~~ 379 (821)
...+.-+.+-|++.
T Consensus 273 adga~gl~~idisn 286 (370)
T COG5276 273 ADGAKGLPIIDISN 286 (370)
T ss_pred eccccCceeEeccC
Confidence 66677777777754
No 442
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.17 E-value=80 Score=38.19 Aligned_cols=182 Identities=7% Similarity=0.075 Sum_probs=98.0
Q ss_pred ceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEe-ccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCC
Q 003423 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISC-NFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (821)
Q Consensus 36 ~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~-~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~ 114 (821)
..+....|..|.+|+.+++.....+...+. .|..+.. .|..-.+.++ ...+++++.-..|.++-+........
T Consensus 91 ~RaWiTiDn~L~lWny~~~~e~~~~d~~sh-tIl~V~LvkPkpgvFv~~---IqhlLvvaT~~ei~ilgV~~~~~~~~-- 164 (1311)
T KOG1900|consen 91 GRAWITIDNNLFLWNYESDNELAEYDGLSH-TILKVGLVKPKPGVFVPE---IQHLLVVATPVEIVILGVSFDEFTGE-- 164 (1311)
T ss_pred cceEEEeCCeEEEEEcCCCCccccccchhh-hheeeeeecCCCCcchhh---hheeEEecccceEEEEEEEeccccCc--
Confidence 467778899999999999777777665544 3444432 2221011122 12577777788888888775431110
Q ss_pred CCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCc-cC
Q 003423 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNL-EA 193 (821)
Q Consensus 115 ~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~-~~ 193 (821)
...+.....+....-.|.|+.... +|+.+.+| .|| .+|.+. |...--|++. -.
T Consensus 165 ----~~~f~~~~~i~~dg~~V~~I~~t~---nGRIF~~G-~dg--~lyEl~----------------Yq~~~gWf~~rc~ 218 (1311)
T KOG1900|consen 165 ----LSIFNTSFKISVDGVSVNCITYTE---NGRIFFAG-RDG--NLYELV----------------YQAEDGWFGSRCR 218 (1311)
T ss_pred ----ccccccceeeecCCceEEEEEecc---CCcEEEee-cCC--CEEEEE----------------EeccCchhhcccc
Confidence 000111122223344577777555 67666544 455 566531 1110000000 00
Q ss_pred eEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEE-ecCCCcEEEEEEcCCCCEEE
Q 003423 194 LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKLV 272 (821)
Q Consensus 194 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~s~~~~~l~ 272 (821)
++-.+++.-..+. .. +..+ ..+..+|..+......+.|.
T Consensus 219 Kiclt~s~ls~lv---------------------------------------Ps-~~~~~~~~~dpI~qi~ID~SR~IlY 258 (1311)
T KOG1900|consen 219 KICLTKSVLSSLV---------------------------------------PS-LLSVPGSSKDPIRQITIDNSRNILY 258 (1311)
T ss_pred cccCchhHHHHhh---------------------------------------hh-hhcCCCCCCCcceeeEeccccceee
Confidence 0111111000000 00 1112 36788999999988778899
Q ss_pred EEeCCCeEEEEecccCc
Q 003423 273 SVSDDRSARIWEVRAEY 289 (821)
Q Consensus 273 s~s~Dg~i~iwd~~~~~ 289 (821)
+-+..++|++||+....
T Consensus 259 ~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 259 VLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred eeccCceEEEEEccCCC
Confidence 99999999999998744
No 443
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=72.01 E-value=2.1e+02 Score=33.82 Aligned_cols=89 Identities=10% Similarity=0.029 Sum_probs=51.0
Q ss_pred ccCceEEEEEee---c----CCCEEEEEcCCCcEEEEecCcccc--cccccccccccCccccccc-ccCCcceEEEEEEe
Q 003423 578 CFGARIMCLDAS---F----EDEVLFCGDLRGNLVLFPLLRDLL--NDKSVALHVEVSPLNYFKG-AHGISTVSTLSVAK 647 (821)
Q Consensus 578 ~h~~~I~~l~~s---~----~~~~L~sgs~dG~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~-~h~~~~Vt~i~~~~ 647 (821)
....+|..+.|+ . ..++|++=.. -.+.|+...-... ............++..+.. .-|......++|.|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~-~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTE-TSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcC-CEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 457789999888 2 2246665544 5677776221100 0000111122233333321 11334567888887
Q ss_pred cCCCceEEEEecCCCeEEEEEe
Q 003423 648 LRSNQTEIRSTGGDGCICYLEY 669 (821)
Q Consensus 648 ~~~~~~~l~t~g~Dg~i~iw~~ 669 (821)
.+...|+.....|...+|++
T Consensus 156 --~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 156 --WDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred --CccceEEEEeccCcEEEEEe
Confidence 55568999999999999999
No 444
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=70.47 E-value=1.3e+02 Score=30.75 Aligned_cols=142 Identities=7% Similarity=-0.041 Sum_probs=78.1
Q ss_pred CcEEEEEEeecCCCCCEEEEEEC---------CCcEEEEEcc-CCceeEEEccCcceeEEEEeeccCCccCeEEEEE-ee
Q 003423 133 HWVFDVCFLKVCNGNRSLAIGCS---------DNSIRVWDIS-NSSIILEVHSPERCLLYSMKLWGDNLEALRIASG-TI 201 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~~~---------d~~i~iwd~~-~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg-~~ 201 (821)
...+++...| +|.+-++.-. -..-.+|-+. .+..++.+..+ -.+...++| |||+..+... +.
T Consensus 111 ~r~ND~~v~p---dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~-~~~~NGla~---SpDg~tly~aDT~ 183 (307)
T COG3386 111 NRPNDGVVDP---DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDD-LTIPNGLAF---SPDGKTLYVADTP 183 (307)
T ss_pred CCCCceeEcC---CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCc-EEecCceEE---CCCCCEEEEEeCC
Confidence 3456677777 7776554322 0112455555 34443333321 112233444 5888666555 44
Q ss_pred CCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCC-eE
Q 003423 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR-SA 280 (821)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg-~i 280 (821)
.+.|.-|++....... ........+..+.+..-+++...+|.+-+++..+| .|
T Consensus 184 ~~~i~r~~~d~~~g~~--------------------------~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v 237 (307)
T COG3386 184 ANRIHRYDLDPATGPI--------------------------GGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRV 237 (307)
T ss_pred CCeEEEEecCcccCcc--------------------------CCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceE
Confidence 5888888776100000 01122333334567777888888888776555554 89
Q ss_pred EEEecccCcccCCCCceeeeceEEeccceeEEEEEEcC
Q 003423 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD 318 (821)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~ 318 (821)
.+|+.. ++. . ....-....+.+++|.+
T Consensus 238 ~~~~pd-G~l-----~-----~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 238 VRFNPD-GKL-----L-----GEIKLPVKRPTNPAFGG 264 (307)
T ss_pred EEECCC-CcE-----E-----EEEECCCCCCccceEeC
Confidence 999988 544 3 23334446788888874
No 445
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=69.70 E-value=16 Score=23.84 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=26.1
Q ss_pred EEEeeecccEEEEECccccEEEEEeeCCCCccce
Q 003423 707 YAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHS 740 (821)
Q Consensus 707 l~~g~~~~~~~vW~~~~~~~l~~i~cgg~~r~~~ 740 (821)
+++--.+.++.++|..+.+.+.+++.|..+|...
T Consensus 7 yv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~ 40 (42)
T TIGR02276 7 YVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVA 40 (42)
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEECCCCCceEE
Confidence 4444457789999999999999999976665443
No 446
>PRK13684 Ycf48-like protein; Provisional
Probab=69.32 E-value=1.5e+02 Score=30.89 Aligned_cols=115 Identities=10% Similarity=-0.018 Sum_probs=62.8
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEEEE
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~iw 333 (821)
-...++++.+.++++.++.+ ..|.+++=..+.+.. -+... .........+.++.+. ++.++.++.+|.+..=
T Consensus 213 ~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s-----W~~~~-~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S 285 (334)
T PRK13684 213 SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES-----WSKPI-IPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVS 285 (334)
T ss_pred CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-----ccccc-CCccccccceeeEEEcCCCCEEEEcCCCeEEEe
Confidence 44678999999998876654 557665322333221 11000 0000112346777787 4567778888877543
Q ss_pred cCCCceeeEeec--ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 334 GSDGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 334 d~~~~~~~~~~~--h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
.-.|+.-..... ........+.+..+++.++ .|..|.|.-++-
T Consensus 286 ~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 286 KDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred CCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 223444333322 1111477777776666544 556788877654
No 447
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.29 E-value=35 Score=32.92 Aligned_cols=69 Identities=16% Similarity=0.124 Sum_probs=48.1
Q ss_pred eEEEEEEcCCEEEEEeCCCeEEEEcC-CCceeeE-------eec------ccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 003423 310 RVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKM-------IKE------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVH 375 (821)
Q Consensus 310 ~i~~v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~-------~~~------h~~~~i~~l~~~~~~~~l~tg~~dg~I~iw 375 (821)
++..+...+.++++...+|.+++||+ .++.+.. +.. .....|..+.++.+|.-+++-+ +|....|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence 44556666899999999999999999 4332211 111 1223688999998888777665 5788888
Q ss_pred EcCC
Q 003423 376 QFQA 379 (821)
Q Consensus 376 d~~~ 379 (821)
+.+-
T Consensus 93 ~~~L 96 (219)
T PF07569_consen 93 SPDL 96 (219)
T ss_pred cccc
Confidence 8743
No 448
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=68.70 E-value=8.9 Score=42.35 Aligned_cols=109 Identities=15% Similarity=0.133 Sum_probs=71.8
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcCC
Q 003423 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSD 336 (821)
Q Consensus 257 ~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~~ 336 (821)
..++++.-+|.++.+++++.||.|++++...... ..+.....+-..+.|.+.-++++..|..+.-|.-+
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q-----------ski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ-----------SKICEEAKPKENLVFTNHGLVTATSDRRALAWKED 83 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccch-----------hhhhhhcCCccceeeeccceEEEeccchhheeecc
Confidence 3467788889999999999999999999876544 12223333445566766678888889988899887
Q ss_pred CceeeEeec--ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 003423 337 GKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (821)
Q Consensus 337 ~~~~~~~~~--h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~ 377 (821)
|-..+.+.. ...+...++..+|..+. ++|.--|.|.-+|.
T Consensus 84 gvvqqqfdyndqsekefss~~cdptaqn-vvgtlcggv~q~dc 125 (1636)
T KOG3616|consen 84 GVVQQQFDYNDQSEKEFSSILCDPTAQN-VVGTLCGGVEQFDC 125 (1636)
T ss_pred CcchhhccccchhhhhccceecCchhhh-hhhhhccceeeehH
Confidence 755444432 23334566666775433 23444455666654
No 449
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=67.98 E-value=14 Score=21.74 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=21.2
Q ss_pred ceEEEEEeecCCCEEEEEcCCCcEEEEe
Q 003423 581 ARIMCLDASFEDEVLFCGDLRGNLVLFP 608 (821)
Q Consensus 581 ~~I~~l~~s~~~~~L~sgs~dG~i~iw~ 608 (821)
..|.+++.+ .++++.+...+.+++|.
T Consensus 2 E~i~aia~g--~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAG--DSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEcc--CCEEEEEeCCCeEEecC
Confidence 457888887 55999999999999983
No 450
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.95 E-value=25 Score=36.78 Aligned_cols=116 Identities=11% Similarity=0.139 Sum_probs=73.6
Q ss_pred eeeeEEEEEeccCCCCCCcceEEee-cCCeEEEEECCCCeee----eEEEeeccccEEeEEeccccCCCCCCccceeeEE
Q 003423 17 LGEISALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGTLI----RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (821)
Q Consensus 17 ~~~Vt~l~~~~~p~~~~~~~~l~~g-~~~~i~iwd~~t~~~~----~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l 91 (821)
.|+|.++.|| +| .+.||+- .+.+|.+.+....+.. .+.+. ....|+|+.|+.. .-+
T Consensus 66 ~G~I~SIkFS--lD----nkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~-k~~~IlGF~W~~s------------~e~ 126 (657)
T KOG2377|consen 66 KGEIKSIKFS--LD----NKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT-KNANILGFCWTSS------------TEI 126 (657)
T ss_pred CCceeEEEec--cC----cceEEEEecCceEEEEecCCCchhhHHHHHhcc-CcceeEEEEEecC------------eeE
Confidence 4789999999 99 5666654 4899999998543322 22222 3446999999844 356
Q ss_pred EEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCE--EEEEECCCcEEEEEccCCc
Q 003423 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRS--LAIGCSDNSIRVWDISNSS 168 (821)
Q Consensus 92 ~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~--l~t~~~d~~i~iwd~~~~~ 168 (821)
+.-.+.-+-+|...... ..++..+.|+-.|.=-.|.+ +-+. |+|+-..+++.-+.+.++.
T Consensus 127 A~i~~~G~e~y~v~pek--------------rslRlVks~~~nvnWy~yc~---et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 127 AFITDQGIEFYQVLPEK--------------RSLRLVKSHNLNVNWYMYCP---ETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred EEEecCCeEEEEEchhh--------------hhhhhhhhcccCccEEEEcc---ccceEeeeccccccccccEEEeece
Confidence 66667778888876542 33445556666666677777 5543 4444445555555555544
No 451
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=67.77 E-value=2.1e+02 Score=32.05 Aligned_cols=116 Identities=9% Similarity=-0.045 Sum_probs=59.6
Q ss_pred cceEEeecCCeEEEEECCCCeeeeEEEeeccccEEe---EEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCC
Q 003423 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHG---ISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPN 111 (821)
Q Consensus 35 ~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~---i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~ 111 (821)
+.+++++.++.|.-.|.+||+++-++.......+.. ......+... .+ ..+++...++.+.-+|..+++
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av-~~----~~v~v~t~dg~l~ALDa~TGk--- 141 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL-YD----GKVFFGTLDARLVALDAKTGK--- 141 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE-EC----CEEEEEcCCCEEEEEECCCCC---
Confidence 344555557899999999999988876422111211 0000000000 01 145555667887777776543
Q ss_pred CCCCCccccccceeeec--cCCC--CcEEEEEEeecCCCCCEEEEEE------CCCcEEEEEccCCceeEEEc
Q 003423 112 SQYQPETCVNLSLVQSL--PRLS--HWVFDVCFLKVCNGNRSLAIGC------SDNSIRVWDISNSSIILEVH 174 (821)
Q Consensus 112 ~~~~~~~~~~~~~~~~~--~~h~--~~I~~~~~~~~~~~~~~l~t~~------~d~~i~iwd~~~~~~~~~~~ 174 (821)
.+-.. ..+. ..+++.-..- ++ .++++. .+|.|.-+|.++|+.+-++.
T Consensus 142 ------------~~W~~~~~~~~~~~~~tssP~v~---~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 142 ------------VVWSKKNGDYKAGYTITAAPLVV---KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ------------EEeecccccccccccccCCcEEE---CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 22111 1111 0111111111 34 444443 26889999999999876554
No 452
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=67.59 E-value=1.5e+02 Score=32.26 Aligned_cols=63 Identities=8% Similarity=0.055 Sum_probs=38.6
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEe-ccceeEEEEEEcCCE
Q 003423 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY-GHNARVWDCCLTDSF 320 (821)
Q Consensus 254 ~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~v~~~~~~ 320 (821)
..-..-+.|+|.|||++|++--..|.|++++..+..... ...+. .... .-......++++|++
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~---~~~l~-~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKV---VFTLP-EIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceee---eecCC-ceeccCCCCceeeEEECCCc
Confidence 334567899999999888877657999999765432200 00000 0111 125667889998654
No 453
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=66.41 E-value=1.4e+02 Score=32.27 Aligned_cols=29 Identities=28% Similarity=0.261 Sum_probs=24.9
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 003423 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (821)
Q Consensus 350 ~i~~l~~~~~~~~l~tg~~dg~I~iwd~~ 378 (821)
.|.+++..+..+.+++...+|.|.+|++.
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 38999999989999999999999999995
No 454
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.82 E-value=2.3e+02 Score=32.28 Aligned_cols=43 Identities=23% Similarity=0.237 Sum_probs=32.5
Q ss_pred CcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcc
Q 003423 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER 178 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~ 178 (821)
..+..+..|| +.++||-=..+|.|.+-+++..+++.++..+..
T Consensus 217 ~~~~ki~VS~---n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~ 259 (829)
T KOG2280|consen 217 SSVVKISVSP---NRRFLALYTETGKIWVVSIDLSQILCEFNCTDH 259 (829)
T ss_pred ceEEEEEEcC---CcceEEEEecCCcEEEEecchhhhhhccCCCCC
Confidence 4566778888 888888888889888888877777766664443
No 455
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=61.82 E-value=3.6e+02 Score=32.66 Aligned_cols=168 Identities=14% Similarity=0.156 Sum_probs=89.6
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecCCcccceeccCCCCcceEEE-EeecCCeEE
Q 003423 356 YDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL-HLTSEDTLY 434 (821)
Q Consensus 356 ~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l-~f~~~~~~l 434 (821)
+-++...+++-+.+|.|+-.+...-..+... .... .... .+.+..+ .-+....++
T Consensus 512 lI~~E~v~v~lS~~GyIKr~~~~~~~~q~~g--~~~~---------------------~~ke-~D~i~~~~~~~T~d~LL 567 (957)
T PRK13979 512 LIVVEDVVITLSNEGFIKRIPLKSYNRSNSN--VEDI---------------------EYRE-GDFNKFLIQSNTKDTLL 567 (957)
T ss_pred cCCCcceEEEEecCCEEEEcccccccccccc--cccc---------------------ccCC-CCceEEEEEEcCCCEEE
Confidence 3456778899999999988765321100000 0000 0001 1223333 334456888
Q ss_pred EEecCCcEEEEEecCCCcceee----Eeeec----c-CCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEEEEecCCC
Q 003423 435 IATNHGYLYHTKLCDMDSVNWN----KILQV----S-EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (821)
Q Consensus 435 ~~~~~g~~~~~~i~~~~~~~~~----~~~~~----~-~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i~~~~~~~ 505 (821)
+.|+.|+++.++.++.....|. .+... . ....+..+-..... ....+++..+..|.++-..+..-.
T Consensus 568 ~FTn~Gkvy~ikvy~IPe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef-----~~~~~lv~~Tk~G~VKrt~L~ef~ 642 (957)
T PRK13979 568 IFTDKGNMYQIKGINIPEFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDF-----TPQKDFIFITDSGGIKKTSLDKFV 642 (957)
T ss_pred EEECCCeEEEEEeeeCCCCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccC-----CCCCEEEEEECCCeEEEEehhhcc
Confidence 9999999999988876554432 11111 1 12333332221111 234578889999999998876543
Q ss_pred CCCcceeEEeeccCccceeeeeEEeecC-CCeEEEEECCCCcEEEeeecC
Q 003423 506 HTPQLSFTFTWSAGIERQLLGTYWCKSL-GHRFIFTADPKGRLKLWQLCD 554 (821)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 554 (821)
........+.. .....+..+..+... +...++..+.+|....|+...
T Consensus 643 ~~r~~~~aikL--~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~e 690 (957)
T PRK13979 643 TNYTKLMALKL--KKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPE 690 (957)
T ss_pred ccccceEEEEc--CCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHH
Confidence 32222222222 223344444433322 235677888889888887754
No 456
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.60 E-value=85 Score=38.06 Aligned_cols=57 Identities=11% Similarity=-0.056 Sum_probs=35.7
Q ss_pred CCEEEEEeCCCeEEEEcCCCcee-eEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCc
Q 003423 318 DSFIITAGEDCTCRVWGSDGKQL-KMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (821)
Q Consensus 318 ~~~l~s~~~dg~i~iwd~~~~~~-~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~ 380 (821)
+.-+..+...+.+..|+...... ..+..... ...+++..++++-.||.+..||.+..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 209 PTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred CCCcceeeeeeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCCC
Confidence 34455555566666666533222 22222211 11778999999999999999999663
No 457
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=61.58 E-value=24 Score=39.84 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=25.2
Q ss_pred CcEEEEEEcC----CCCEEEEEeCCCeEEEEecccCcc
Q 003423 257 GSIFRIEWSS----CGSKLVSVSDDRSARIWEVRAEYW 290 (821)
Q Consensus 257 ~~I~~l~~s~----~~~~l~s~s~Dg~i~iwd~~~~~~ 290 (821)
+.+..++.++ +..+|++.+.|+++|+||+.++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 3455566655 667999999999999999999765
No 458
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=56.78 E-value=2.1e+02 Score=28.34 Aligned_cols=169 Identities=13% Similarity=0.001 Sum_probs=82.6
Q ss_pred cEEEEEEeecCCCCCEEEEEE-CCCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEE-cc
Q 003423 134 WVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWK-VD 211 (821)
Q Consensus 134 ~I~~~~~~~~~~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd-~~ 211 (821)
.+.+.++++ +++.+|... .++.-.+|-...+.....+.... .+....+ ++++.+.+....+...+++. ..
T Consensus 25 ~~~s~AvS~---dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~--~l~~PS~---d~~g~~W~v~~~~~~~~~~~~~~ 96 (253)
T PF10647_consen 25 DVTSPAVSP---DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG--SLTRPSW---DPDGWVWTVDDGSGGVRVVRDSA 96 (253)
T ss_pred cccceEECC---CCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC--ccccccc---cCCCCEEEEEcCCCceEEEEecC
Confidence 688899999 888776554 23333444333333322221111 1222222 35666666655555556553 12
Q ss_pred cCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEE-EEecCCCcEEEEEEcCCCCEEEEEe---CCCeEEEEeccc
Q 003423 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF-RLVGHEGSIFRIEWSSCGSKLVSVS---DDRSARIWEVRA 287 (821)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~I~~l~~s~~~~~l~s~s---~Dg~i~iwd~~~ 287 (821)
.. ...... ....-.+.|..+.+||||.++|... .++.|.+=-+..
T Consensus 97 ~g-------------------------------~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r 145 (253)
T PF10647_consen 97 SG-------------------------------TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR 145 (253)
T ss_pred CC-------------------------------cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence 00 111111 1111112899999999999876555 357777766553
Q ss_pred CcccCCCCceeeec-eEEeccceeEEEEEEc-CCEEEEE-e-CCCeEEE-EcCCCceeeEe
Q 003423 288 EYWKDSDSIEEVGS-SVLYGHNARVWDCCLT-DSFIITA-G-EDCTCRV-WGSDGKQLKMI 343 (821)
Q Consensus 288 ~~~~~~~~~~~~~~-~~~~~h~~~i~~v~~~-~~~l~s~-~-~dg~i~i-wd~~~~~~~~~ 343 (821)
.... .......+ .........+.++.|. +..|+.. . .++.+.. ...+|.....+
T Consensus 146 ~~~g--~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~~~~l 204 (253)
T PF10647_consen 146 DGDG--VPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGPSTPL 204 (253)
T ss_pred CCCC--CcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCccccc
Confidence 3220 00011111 1222335678999998 3434333 3 3333333 44466555554
No 459
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=56.25 E-value=1.3e+02 Score=30.30 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=36.6
Q ss_pred cEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEc------CCCcEEEEecCcc
Q 003423 546 RLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGD------LRGNLVLFPLLRD 612 (821)
Q Consensus 546 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs------~dG~i~iw~~~~~ 612 (821)
.|.+||.... +... +..+-.+.|+++.|..++++++.|. ....+..||+..+
T Consensus 17 ~lC~yd~~~~--------------qW~~-~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 17 GLCLYDTDNS--------------QWSS-PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred EEEEEECCCC--------------Eeec-CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 5889997764 1111 1233467899999997888888875 4567889998854
No 460
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=56.21 E-value=2.8e+02 Score=29.53 Aligned_cols=165 Identities=11% Similarity=0.065 Sum_probs=92.2
Q ss_pred EEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEec-cceeEE-EEE-Ec-CCEEEEE
Q 003423 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG-HNARVW-DCC-LT-DSFIITA 324 (821)
Q Consensus 249 ~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~i~-~v~-~~-~~~l~s~ 324 (821)
+..+......|..+-..|||+.|..-+. .++.++++.+.... .+.+. ....+ ....|+ ++. .+ +..+...
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~----~rkl~-~dspg~~~~~Vte~l~lL~Gg~SLLv~ 286 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQ----IRKLV-DDSPGDSRHQVTEQLYLLSGGFSLLVV 286 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccc----hhhhh-hcCCCchHHHHHHHHHHHhCceeEEEE
Confidence 3334445566777889999998765554 67889988775431 11000 00011 001111 111 11 4678889
Q ss_pred eCCCeEEEEcC---CCc-ee---eEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCC
Q 003423 325 GEDCTCRVWGS---DGK-QL---KMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGR 397 (821)
Q Consensus 325 ~~dg~i~iwd~---~~~-~~---~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 397 (821)
++||-+.-|-- ++. .. +.++-... .+..+.-..+.+-+++-..+|++.++.-.....-
T Consensus 287 ~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa-~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l-------------- 351 (733)
T COG4590 287 HEDGLVSQWFDVRRDGQPHLNHIRNFKLAPA-EVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL-------------- 351 (733)
T ss_pred cCCCceeeeeeeecCCCCcceeeeccccCcc-cceeeccccccceEEEEcCCCceeeeecccCcce--------------
Confidence 99999998853 222 12 22221112 2333333334566777788888877765321110
Q ss_pred cceEEeecCCcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEEEecCC
Q 003423 398 TEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDM 450 (821)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~~i~~~ 450 (821)
....--+.+.-++++|.+..++.-+.|++..+.+.+.
T Consensus 352 ----------------L~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr 388 (733)
T COG4590 352 ----------------LFERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENR 388 (733)
T ss_pred ----------------ehhhhhcCcceeeeCcccchheeecCCceEEEEecCC
Confidence 0001112367788999999999999899887777654
No 461
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=55.85 E-value=4.2e+02 Score=31.53 Aligned_cols=170 Identities=11% Similarity=0.044 Sum_probs=86.0
Q ss_pred EeecCCeEEEEecCCcEEEEEecCCCcceee----E---eeeccCCcceEEEeccCCCCCCCCCCCcEEEEecCCccEEE
Q 003423 426 HLTSEDTLYIATNHGYLYHTKLCDMDSVNWN----K---ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTI 498 (821)
Q Consensus 426 ~f~~~~~~l~~~~~g~~~~~~i~~~~~~~~~----~---~~~~~~~~~i~~~~~~~~~~~~s~~~~~~l~~g~~~g~i~i 498 (821)
.....+.+++.|+.|+++.+...+.....|. . +........+..+-..... .+...+++.+.+|.++-
T Consensus 542 ~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~-----~~~~~lvliT~~GyiKR 616 (800)
T TIGR01063 542 VASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEF-----DDGLYLFFATKNGVVKK 616 (800)
T ss_pred EecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccC-----CCCCEEEEEeCCCEEEE
Confidence 3344667999999999998876654443221 1 1222223333332211111 24467888999999888
Q ss_pred EEecCCCCCCc-ceeEEeeccCccceeeeeEEeecCCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEec
Q 003423 499 VRVVGDVHTPQ-LSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSS 577 (821)
Q Consensus 499 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (821)
.++..-..... ....+.+.. ...+..+..+.+. ..++..+..|.+..+....-..... . ....... .+
T Consensus 617 i~l~~~~~~~r~G~~aiklke--~D~lv~v~~~~~~--d~lll~Ts~Gr~~r~~v~eIp~~gr--~--~~Gv~~i-~L-- 685 (800)
T TIGR01063 617 TSLTEFSNIRSNGIIAIKLDD--GDELISVRLTSGD--DEVMLGSKNGKAVRFPEEDVRPMGR--A--ARGVRGI-KL-- 685 (800)
T ss_pred EEhHHhhhhccCCcccccCCC--CCEEEEEEEeCCC--CEEEEEECCCcEEEEEhhhcCCcCC--C--CCCeecc-cC--
Confidence 77654322111 111111111 2334444433322 3455555677666555443211110 0 0011111 11
Q ss_pred ccCceEEEEEeecCCCEEEEEcCCCcEEEEecCc
Q 003423 578 CFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (821)
Q Consensus 578 ~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~ 611 (821)
.-...|.++....++..++..+..|.++...++.
T Consensus 686 ~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e 719 (800)
T TIGR01063 686 KNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEE 719 (800)
T ss_pred CCCCEEEEEEEeccccEEEEEecCCcEEEEEHHH
Confidence 2244566665555666788999999999988763
No 462
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=54.22 E-value=53 Score=21.00 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=18.8
Q ss_pred cCCCcEEEEEEcCCCCEEEEEe-CC--CeEEEE
Q 003423 254 GHEGSIFRIEWSSCGSKLVSVS-DD--RSARIW 283 (821)
Q Consensus 254 ~h~~~I~~l~~s~~~~~l~s~s-~D--g~i~iw 283 (821)
...+.-....|+|||+.|+-++ .+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455677899999998876544 44 555554
No 463
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=53.43 E-value=27 Score=21.29 Aligned_cols=25 Identities=8% Similarity=-0.025 Sum_probs=21.9
Q ss_pred eEEEeeecccEEEEECccccEEEEE
Q 003423 706 NYAAGFASTDFIIWNLITEAKVVQI 730 (821)
Q Consensus 706 ~l~~g~~~~~~~vW~~~~~~~l~~i 730 (821)
.++++..++.+...|..+++.+++.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 4778888999999999999999875
No 464
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=51.18 E-value=2.3e+02 Score=28.60 Aligned_cols=37 Identities=19% Similarity=0.557 Sum_probs=27.6
Q ss_pred cCCCcEEEEEEcCCCCEEEEEe------CCCeEEEEecccCcc
Q 003423 254 GHEGSIFRIEWSSCGSKLVSVS------DDRSARIWEVRAEYW 290 (821)
Q Consensus 254 ~h~~~I~~l~~s~~~~~l~s~s------~Dg~i~iwd~~~~~~ 290 (821)
+-.+.|..|.|..+.++++.|. ....+..||..+...
T Consensus 34 ~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 34 GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 3567899999986666777664 456788899888654
No 465
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=50.98 E-value=2.8e+02 Score=28.06 Aligned_cols=246 Identities=14% Similarity=0.118 Sum_probs=123.3
Q ss_pred cEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccC-----CCCcEEEEEEe
Q 003423 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-----LSHWVFDVCFL 141 (821)
Q Consensus 67 ~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~I~~~~~~ 141 (821)
+-.+|+++|.. ...++-.+.+...+|+.....++... ..+...++. -....+.+.|+
T Consensus 24 N~WGia~~p~~----------~~WVadngT~~~TlYdg~~~~~~g~~--------~~L~vtiP~~~~~~~~~~PTGiVfN 85 (336)
T TIGR03118 24 NAWGLSYRPGG----------PFWVANTGTGTATLYVGNPDTQPLVQ--------DPLVVVIPAPPPLAAEGTPTGQVFN 85 (336)
T ss_pred ccceeEecCCC----------CEEEecCCcceEEeecCCcccccCCc--------cceEEEecCCCCCCCCCCccEEEEe
Confidence 46788888653 35666777899999998743211111 122333332 12457778887
Q ss_pred ecC-----CCC----CEEEEEECCCcEEEEEccCCce-----eEEEccCcceeEE-EEeeccCCccCeEEEEE-eeCCEE
Q 003423 142 KVC-----NGN----RSLAIGCSDNSIRVWDISNSSI-----ILEVHSPERCLLY-SMKLWGDNLEALRIASG-TIYNEI 205 (821)
Q Consensus 142 ~~~-----~~~----~~l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~-s~~~~~~s~~~~~l~sg-~~dg~i 205 (821)
... ..+ ..++.+++||+|.-|...-+.. ...+.......+| -+++... ..+.+|..+ -..++|
T Consensus 86 ~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~-~~~~~LYaadF~~g~I 164 (336)
T TIGR03118 86 GSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPT-GGGDYLYAANFRQGRI 164 (336)
T ss_pred CCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeec-CCCceEEEeccCCCce
Confidence 410 011 2356678899999998532211 1222222222233 3333322 234444443 456889
Q ss_pred EEEEcccCCcccCC---CCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 003423 206 IVWKVDWEHVAPLL---NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARI 282 (821)
Q Consensus 206 ~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~i 282 (821)
.|+|-......-.. +......+.+ --++.+. -.--|+-..-.++++.=+.+..-|.|-+
T Consensus 165 DVFd~~f~~~~~~g~F~DP~iPagyAP-----------------FnIqnig-~~lyVtYA~qd~~~~d~v~G~G~G~Vdv 226 (336)
T TIGR03118 165 DVFKGSFRPPPLPGSFIDPALPAGYAP-----------------FNVQNLG-GTLYVTYAQQDADRNDEVAGAGLGYVNV 226 (336)
T ss_pred EEecCccccccCCCCccCCCCCCCCCC-----------------cceEEEC-CeEEEEEEecCCcccccccCCCcceEEE
Confidence 99986632211000 0000000000 0011111 1111222222333333344444578888
Q ss_pred EecccCcccCCCCceeeeceEEeccceeEEEEEEc--------CCEEEEEeCCCeEEEEcC-CCceeeEeecccCC----
Q 003423 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--------DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR---- 349 (821)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--------~~~l~s~~~dg~i~iwd~-~~~~~~~~~~h~~~---- 349 (821)
+|....-. +.+ .-.+.-..-|.++.. +.+|+----||+|..+|. +|+.+..+....+.
T Consensus 227 Fd~~G~l~------~r~---as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i 297 (336)
T TIGR03118 227 FTLNGQLL------RRV---ASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKV 297 (336)
T ss_pred EcCCCcEE------EEe---ccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEe
Confidence 88765422 100 112223334666653 467777778999999998 68888777765542
Q ss_pred -CeEEEEEec
Q 003423 350 -GIWRCLYDS 358 (821)
Q Consensus 350 -~i~~l~~~~ 358 (821)
.+|.|+|..
T Consensus 298 ~GLWgL~fGn 307 (336)
T TIGR03118 298 DGLWSLTFGN 307 (336)
T ss_pred cCeEEeeeCC
Confidence 478888854
No 466
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=49.87 E-value=82 Score=29.02 Aligned_cols=31 Identities=13% Similarity=0.374 Sum_probs=25.9
Q ss_pred CcEEEEEEcCCC------CEEEEEeCCCeEEEEeccc
Q 003423 257 GSIFRIEWSSCG------SKLVSVSDDRSARIWEVRA 287 (821)
Q Consensus 257 ~~I~~l~~s~~~------~~l~s~s~Dg~i~iwd~~~ 287 (821)
..|..++|||.| -+|+....++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999954 2689999999999998664
No 467
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.87 E-value=3.8e+02 Score=29.25 Aligned_cols=90 Identities=10% Similarity=0.053 Sum_probs=48.9
Q ss_pred eEEEEEeecCCCEEEEEcCCCcEEEEe---cCccc-ccccccccccccCccc-ccccccCCcceEEEEEEecCCCceEEE
Q 003423 582 RIMCLDASFEDEVLFCGDLRGNLVLFP---LLRDL-LNDKSVALHVEVSPLN-YFKGAHGISTVSTLSVAKLRSNQTEIR 656 (821)
Q Consensus 582 ~I~~l~~s~~~~~L~sgs~dG~i~iw~---~~~~~-~~~~~~~~~~~~~~~~-~~~~~h~~~~Vt~i~~~~~~~~~~~l~ 656 (821)
.|..+..++.|..++..+.+|.+.++= +.++. ..+....-.++--++. .+......-.+-..+|+|.+-....|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 477788899999999999999776652 11100 0000000000000011 111111223456777888652235666
Q ss_pred EecCCCeEEEEEeec
Q 003423 657 STGGDGCICYLEYDK 671 (821)
Q Consensus 657 t~g~Dg~i~iw~~~~ 671 (821)
--..|..||+|++..
T Consensus 185 iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSE 199 (741)
T ss_pred EEecCcEEEEEecCC
Confidence 677788999999854
No 468
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=48.93 E-value=3.5e+02 Score=28.59 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=22.0
Q ss_pred CeEEEEcCCCceeeEeecccCCCeEEEEEecCCCEEEEEe
Q 003423 328 CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (821)
Q Consensus 328 g~i~iwd~~~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~ 367 (821)
|.+.-++.++.....+.... +..+.++|+++|+++++-.
T Consensus 164 g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 34455555554444443222 2467888888887766543
No 469
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=48.39 E-value=2.5e+02 Score=33.11 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=29.0
Q ss_pred CCeEEE-eeecccEEEEECccccEEEEEeeCCCC--ccceee
Q 003423 704 SCNYAA-GFASTDFIIWNLITEAKVVQIPCGGWR--RPHSYF 742 (821)
Q Consensus 704 ~~~l~~-g~~~~~~~vW~~~~~~~l~~i~cgg~~--r~~~~~ 742 (821)
+++++. |..|+.|+.+|.+|.++|++...+++- -|-.|.
T Consensus 691 gglvF~~gt~d~~l~A~D~~tGk~lW~~~l~~~~~a~P~tY~ 732 (764)
T TIGR03074 691 GGLVFIGATQDNYLRAYDLSTGKELWKARLPAGGQATPMTYM 732 (764)
T ss_pred CCEEEEEeCCCCEEEEEECCCCceeeEeeCCCCcccCCEEEE
Confidence 556665 678999999999999999988665443 344453
No 470
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=48.28 E-value=3.2e+02 Score=27.91 Aligned_cols=135 Identities=12% Similarity=0.077 Sum_probs=75.1
Q ss_pred EEEEEEeecCCCCCEEEEEECCCcEEEEEccCCceeEEEccCcceeEEE---EeeccCCccCeEEEEEeeCCEEEEEEcc
Q 003423 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYS---MKLWGDNLEALRIASGTIYNEIIVWKVD 211 (821)
Q Consensus 135 I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~s---~~~~~~s~~~~~l~sg~~dg~i~vwd~~ 211 (821)
|.++...+ +|++|+++-.-.+|.+.|-.+|+.+-.+.++... -+. ..|. ...+-..+-.+..++.|.++|-.
T Consensus 146 iNsV~~~~---~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~-df~~~~~~f~-~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 146 INSVDKDD---DGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNS-DFTLPATNFS-WQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred eeeeeecC---CccEEEEecccCEEEEEECCCCcEEEEeCCCCCC-cccccCCcEe-eccCCEEeccCCCCCEEEEEcCC
Confidence 66777666 8999999888888999999999999888766221 111 0111 12344455555678899999864
Q ss_pred cCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEE-----EEEcCCCCEEEEEeCCCeEEEEec
Q 003423 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFR-----IEWSSCGSKLVSVSDDRSARIWEV 285 (821)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~-----l~~s~~~~~l~s~s~Dg~i~iwd~ 285 (821)
.... .....+.. ..+.+.....+...+..+..|...+.+ +...|+|+.|++=+..+.+.-++.
T Consensus 221 ~~~~---------~~~~~s~~--~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~~ 288 (299)
T PF14269_consen 221 NSDF---------NGTEPSRG--LVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNNGRISEFTP 288 (299)
T ss_pred CCCC---------CCCcCCCc--eEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCCceEEEECC
Confidence 1111 00001111 122222222233444444334433333 455678888887777665554443
No 471
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=47.59 E-value=1.2e+02 Score=34.35 Aligned_cols=85 Identities=13% Similarity=0.072 Sum_probs=41.6
Q ss_pred cCCCEEEEEcCCCcEEEEecCccccccccccc--------ccccCccccc--cccc-CCcceEEEEEEec-CCCceEEEE
Q 003423 590 FEDEVLFCGDLRGNLVLFPLLRDLLNDKSVAL--------HVEVSPLNYF--KGAH-GISTVSTLSVAKL-RSNQTEIRS 657 (821)
Q Consensus 590 ~~~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~h-~~~~Vt~i~~~~~-~~~~~~l~t 657 (821)
++...|+.+..||.+................+ ...+..+-.. .+.. ....+.++..... ..+..+++|
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 46778999999999999887652111000000 0001000000 0000 1123344444432 135688999
Q ss_pred ecCCCeEEEEEeecCCc
Q 003423 658 TGGDGCICYLEYDKDRE 674 (821)
Q Consensus 658 ~g~Dg~i~iw~~~~~~~ 674 (821)
.++|+++|+|+++....
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999977543
No 472
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=46.78 E-value=44 Score=21.42 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=21.2
Q ss_pred eEEeecCCeEEEEECCCCeeeeEEEe
Q 003423 37 FLLAGSGSQVLLYDLEAGTLIRPFQV 62 (821)
Q Consensus 37 ~l~~g~~~~i~iwd~~t~~~~~~~~~ 62 (821)
+.+...+|.|.-.|.+||+.+-+++.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 34445589999999999999988875
No 473
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=46.36 E-value=2.4e+02 Score=25.93 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=25.4
Q ss_pred cceEEEEeecCC-------eEEEEecCCcEEEEEecCCCcceeeEeeec
Q 003423 420 EYVRCLHLTSED-------TLYIATNHGYLYHTKLCDMDSVNWNKILQV 461 (821)
Q Consensus 420 ~~i~~l~f~~~~-------~~l~~~~~g~~~~~~i~~~~~~~~~~~~~~ 461 (821)
..+..++++|.| -+.+.|++|.+..+.-.......|..+...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~v~dv 134 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNRVADV 134 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEeeeeeh
Confidence 379999999965 345557777776443222114556665543
No 474
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=43.11 E-value=6.3e+02 Score=29.89 Aligned_cols=66 Identities=18% Similarity=0.067 Sum_probs=44.7
Q ss_pred ceeEEEEEEc--CCEEEEEeCCCeEEEEcC-CCceeeEe----------ec--------ccCCCeEEEEEecCCCEEEEE
Q 003423 308 NARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMI----------KE--------HIGRGIWRCLYDSLSSLLVTA 366 (821)
Q Consensus 308 ~~~i~~v~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~----------~~--------h~~~~i~~l~~~~~~~~l~tg 366 (821)
.+.|.++... +..++.+-+||+|.+.|- +-+.+... .. ....++..++|+|.+..++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 4557777665 688999999999999986 32222111 00 000123457899999999999
Q ss_pred eCCCcEE
Q 003423 367 GFDSAIK 373 (821)
Q Consensus 367 ~~dg~I~ 373 (821)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9999866
No 475
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=43.02 E-value=55 Score=20.96 Aligned_cols=30 Identities=10% Similarity=-0.048 Sum_probs=25.4
Q ss_pred EEEeeecccEEEEECccccEEEEEeeCCCC
Q 003423 707 YAAGFASTDFIIWNLITEAKVVQIPCGGWR 736 (821)
Q Consensus 707 l~~g~~~~~~~vW~~~~~~~l~~i~cgg~~ 736 (821)
+.++..++.++..|..|++.+++..-++..
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~ 32 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQTGPPV 32 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEESSSGG
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeCCCCC
Confidence 567788999999999999999999776544
No 476
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=41.57 E-value=5.3e+02 Score=28.60 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=43.1
Q ss_pred eeeEEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCC
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~ 97 (821)
.+|.+|.+. -. ..+.+|.+.=+..||..+|+.++.-......+|..+..+.. ..+-++.++
T Consensus 165 ~~V~aLv~D--~~-----g~lWvgT~dGL~~fd~~~gkalql~s~~~dk~I~al~~d~q------------g~LWVGTdq 225 (671)
T COG3292 165 TPVVALVFD--AN-----GRLWVGTPDGLSYFDAGRGKALQLASPPLDKAINALIADVQ------------GRLWVGTDQ 225 (671)
T ss_pred ccceeeeee--cc-----CcEEEecCCcceEEccccceEEEcCCCcchhhHHHHHHHhc------------CcEEEEecc
Confidence 567788777 44 35566665558999999998876655444345666554433 245555566
Q ss_pred eEEEEEEe
Q 003423 98 RVKLFELN 105 (821)
Q Consensus 98 ~v~i~~~~ 105 (821)
-+.+.+..
T Consensus 226 Gv~~~e~~ 233 (671)
T COG3292 226 GVYLQEAE 233 (671)
T ss_pred ceEEEchh
Confidence 66666554
No 477
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=40.48 E-value=3.8e+02 Score=26.54 Aligned_cols=114 Identities=11% Similarity=0.040 Sum_probs=63.9
Q ss_pred cEEEEEEeecCCCCCEEEEEECCCcEEEEE-ccCCce-eEEEccCcce-eEEEEeeccCCccCeEEEEEe---eCCEEEE
Q 003423 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWD-ISNSSI-ILEVHSPERC-LLYSMKLWGDNLEALRIASGT---IYNEIIV 207 (821)
Q Consensus 134 ~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd-~~~~~~-~~~~~~~~~~-~~~s~~~~~~s~~~~~l~sg~---~dg~i~v 207 (821)
.++.-.|++ ++...+....+...+++. ..++.. ...+..+... .+.++++ ++|+.++|.-. .++.|.+
T Consensus 67 ~l~~PS~d~---~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~v---SpDG~RvA~v~~~~~~~~v~v 140 (253)
T PF10647_consen 67 SLTRPSWDP---DGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRV---SPDGTRVAVVVEDGGGGRVYV 140 (253)
T ss_pred ccccccccC---CCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEE---CCCCcEEEEEEecCCCCeEEE
Confidence 577778888 776666656566667664 233322 2223333221 4566666 78998887655 3577777
Q ss_pred EEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCC
Q 003423 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (821)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~D 277 (821)
=-+...... .+. ....+..........+..+.|.+++.+++.+...
T Consensus 141 a~V~r~~~g----~~~--------------------~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 141 AGVVRDGDG----VPR--------------------RLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred EEEEeCCCC----Ccc--------------------eeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence 665511100 000 0112222222345689999999999877655543
No 478
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.18 E-value=2.7e+02 Score=34.00 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=23.0
Q ss_pred cCCCCEEEEEeCCCeEEEEecccCc
Q 003423 265 SSCGSKLVSVSDDRSARIWEVRAEY 289 (821)
Q Consensus 265 s~~~~~l~s~s~Dg~i~iwd~~~~~ 289 (821)
++++..++++..||.+..||...+.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCc
Confidence 7789999999999999999999864
No 479
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.28 E-value=6.5e+02 Score=30.01 Aligned_cols=261 Identities=11% Similarity=0.062 Sum_probs=0.0
Q ss_pred eeE-EEEEeccCCCCCCcceEEeec-CCeEEEEECCC----------CeeeeEEEeeccccEEeEEeccccCCCCCCccc
Q 003423 19 EIS-ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA----------GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (821)
Q Consensus 19 ~Vt-~l~~~~~p~~~~~~~~l~~g~-~~~i~iwd~~t----------~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 86 (821)
+|. |++-. +..|.+|. +|.+..|.+.. .+.......+...+|..|...+..
T Consensus 17 ~vd~~va~~--------~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~--------- 79 (877)
T KOG2063|consen 17 EVDLCVAAY--------GNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASL--------- 79 (877)
T ss_pred ccchHHHHh--------CCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchh---------
Q ss_pred eeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCC--CEEEEEE-CCCcEEEEE
Q 003423 87 VTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN--RSLAIGC-SDNSIRVWD 163 (821)
Q Consensus 87 ~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~--~~l~t~~-~d~~i~iwd 163 (821)
.++.+-.|+.+.++++..-. .......++|-..-..++.-.. .+ .+.+..+ ....+++.-
T Consensus 80 --~~ll~l~dsqi~~~~l~~~~------------~~~~~~~~Kg~~~f~~~~~~~s---~~~~~~~i~~~~~k~~~~~~~ 142 (877)
T KOG2063|consen 80 --ELLLILSDSQIAVHKLPELE------------PVPSGTRLKGASLFTIDLRPIS---TGPSVYEICLSVRKRLIRFFW 142 (877)
T ss_pred --cchheecCCcceeeecCccc------------ccccccccccceeecccccccc---CCcceEEEEeeccceEEEEEe
Q ss_pred ccCCceeEEEccCcceeEEEEeeccCCccCeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccc
Q 003423 164 ISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (821)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (821)
......+....-....+..+.++ .+..+.+|-.+-...+|.-.
T Consensus 143 ~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~c~~~~~~~~ii~~~~-------------------------------- 185 (877)
T KOG2063|consen 143 NGRDGIVLVKELGFPDVPKARAW-----CGHIVCLGLKKSYYIINNTS-------------------------------- 185 (877)
T ss_pred cCCCceEEEEecccccchhhhcc-----cceeEEEeecceeEEEecCC--------------------------------
Q ss_pred cceeeEEEEecCCCcEEE---------EEEcCCCCEEEEEeCCCeEEEEecccCc-ccCCCCceeeeceEEeccceeEEE
Q 003423 244 HTAVNLFRLVGHEGSIFR---------IEWSSCGSKLVSVSDDRSARIWEVRAEY-WKDSDSIEEVGSSVLYGHNARVWD 313 (821)
Q Consensus 244 ~~~~~~~~~~~h~~~I~~---------l~~s~~~~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~h~~~i~~ 313 (821)
++ .++...+.+ |.-.+++..++.| .|....+-|..... . .....-.....+
T Consensus 186 -~~------~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~-kd~~gv~vd~~G~~~~-----------~~~l~ws~~P~~ 246 (877)
T KOG2063|consen 186 -KG------VGPNLFPSSMDNESRKPLIKSLSDQSELLLG-KDNIGVVVDLNGIIAQ-----------RGTLVWSEVPLS 246 (877)
T ss_pred -Cc------cccceeeeccccccCCCeEEEecCCceEEEc-cCceEEEEecCCcccC-----------CCceEecccchh
Q ss_pred EEEcCCEEEEEeCCCeEEEEcC-CCceeeEe-ecccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 003423 314 CCLTDSFIITAGEDCTCRVWGS-DGKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374 (821)
Q Consensus 314 v~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~-~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~i 374 (821)
+.+...++++-+.. .+-+|+. +++.++++ .-..+..+.+... +.+++.+..+...+
T Consensus 247 v~~~~PYlIa~~~~-~veI~s~~~~qlvQSI~~~~~~~~l~s~~~----~i~~~~~~s~v~~L 304 (877)
T KOG2063|consen 247 VVVESPYLIALLDR-SVEIRSKLDGQLVQSITPLSNGRSLLSAHN----GIIFVASLSNVWIL 304 (877)
T ss_pred hcccCceEEEEccc-cEEEEeccCHHHhhccccccccceeeecCC----cEEEEEeccceEEE
No 480
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=39.17 E-value=7e+02 Score=29.28 Aligned_cols=304 Identities=11% Similarity=0.031 Sum_probs=0.0
Q ss_pred EEEEEeccCCCCCCcceEEeecCCeEEEEECCCCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCCeEE
Q 003423 21 SALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVK 100 (821)
Q Consensus 21 t~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~ 100 (821)
+.+... +- .-.+++|..+.+.+=...+....-.+- +.++.++..-.. ..++.+-.-..++
T Consensus 826 ~f~~~v--gh----s~~fvTg~~pfl~~s~~~s~~k~f~~g---NIPlvsv~p~s~-----------rgy~~Vd~~~~vr 885 (1319)
T COG5161 826 VFIKAV--GH----SFMFVTGKGPFLCRSRYTSSSKAFHRG---NIPLVSVIPLSK-----------RGYLMVDNVLGVR 885 (1319)
T ss_pred EEeecc--Ce----EEEEEcCCccEEEEEeccCCcceeecC---CCceeeeeeccc-----------ccEEEEeccccee
Q ss_pred EEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEEC-------------------------
Q 003423 101 LFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS------------------------- 155 (821)
Q Consensus 101 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~------------------------- 155 (821)
++.+..+...-.. .-+.+..+.| ..+..++++| .+.+.++|+.
T Consensus 886 ~~~~~~dn~y~gn--------K~p~k~~~~~-Ktlqklvyh~---~~~~~~Vgsc~~~~f~~~gEdgE~~i~~D~Nvpha 953 (1319)
T COG5161 886 ASQYVFDNGYVGN--------KNPVKRTPKH-KTLQKLVYHC---AGRYMVVGSCEEAGFSPKGEDGESGIPVDTNVPHA 953 (1319)
T ss_pred EEEEEeccceecc--------cCceeecccc-ccccceeeec---cceEEEEEeeeecCccccCCCCCccCccCCCCccc
Q ss_pred ---CCcEEEEEccCCceeEEEccCcceeEEEEeeccCCccCe------EEEEEeeC---------CEEEEEEcccCCccc
Q 003423 156 ---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL------RIASGTIY---------NEIIVWKVDWEHVAP 217 (821)
Q Consensus 156 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~s~~~~~~s~~~~------~l~sg~~d---------g~i~vwd~~~~~~~~ 217 (821)
.+.|-++...+.+.+-+..-++..+++++++........ ++++|+.. |..+++++- +..|
T Consensus 954 eg~~~~vdL~spksw~vID~yef~~ne~v~~i~~~~l~~~~~tk~k~pyi~vgtt~~~gED~p~rG~~hv~eII--~VVP 1031 (1319)
T COG5161 954 EGYRFYVDLYSPKSWEVIDTYEFDENEYVFHIKYLILDDMQGTKGKSPYILVGTTFIEGEDRPARGRLHVLEII--SVVP 1031 (1319)
T ss_pred ccceeeEEEecCcceeEeeeeecccceeeeeeeeeeeeccccccCCCceEEEEeeecccCccCCcCceEEEEEE--EecC
Q ss_pred CCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCce
Q 003423 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE 297 (821)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 297 (821)
+++.+.... +.+.+..-+-....+.+... +|+++.+-+. .|.+.+++.... +-
T Consensus 1032 ~pg~P~t~~------------------KLK~~~~Ee~kGTV~~vcEV--~G~~~~~qgq--KV~Vr~i~~~~~-----ii 1084 (1319)
T COG5161 1032 SPGSPFTDC------------------KLKVLGIEETKGTVVRVCEV--RGKIALCQGQ--KVMVRKIDRSSG-----II 1084 (1319)
T ss_pred CCCCCcccc------------------eeeEEehhhcccEEEEEEEE--ccEEEeccCc--EEEEEEecccCC-----cc
Q ss_pred eeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEcCCCceeeEeecccC---CCeEEEEEecCCC--EEEEEeCCCcE
Q 003423 298 EVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIG---RGIWRCLYDSLSS--LLVTAGFDSAI 372 (821)
Q Consensus 298 ~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~h~~---~~i~~l~~~~~~~--~l~tg~~dg~I 372 (821)
++ .+..-..-+.++..-.++++.|..-.-+...-.+.++.+...-..+ ..+++..|--+|. +++++..+|.|
T Consensus 1085 pV---~F~Dl~~ft~s~k~~~Nlll~gD~~qg~~F~gF~~ePyRm~l~s~s~~~~n~~s~efLv~G~~lyf~~~Da~gni 1161 (1319)
T COG5161 1085 PV---GFYDLHIFTSSIKVVKNLLLAGDIYQGLSFFGFQSEPYRMHLISSSEPLRNATSTEFLVTGNELYFLCCDAKGNI 1161 (1319)
T ss_pred ee---EEEeeeeeeehhhhhhheeehhhhhcCcEEEEecCCcEEEEEecCCchhhcchhhHhhccCCeeEEEEEcCCCCE
Q ss_pred EEEEcCCcCCCcccCC
Q 003423 373 KVHQFQAFLPGSLESH 388 (821)
Q Consensus 373 ~iwd~~~~~~~~~~~~ 388 (821)
++....-.......+.
T Consensus 1162 h~l~Y~P~np~S~sG~ 1177 (1319)
T COG5161 1162 HGLTYSPNNPISMSGA 1177 (1319)
T ss_pred EEEecCCCCccccCcc
No 481
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=38.68 E-value=1.8e+02 Score=28.63 Aligned_cols=73 Identities=18% Similarity=0.157 Sum_probs=42.0
Q ss_pred cCceEEEEEeecC-------CCEEEEEcCCCcEEEEecCcccccccccccccccCcccccccccCCcceEEEEEEecCC-
Q 003423 579 FGARIMCLDASFE-------DEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRS- 650 (821)
Q Consensus 579 h~~~I~~l~~s~~-------~~~L~sgs~dG~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~- 650 (821)
+...|||++--.. -..|+.|.++|.|+|.|-.. ...+...+ .- .....|+..-..+
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~a-------------f~il~~~~-lp--svPv~i~~~G~~de 238 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQA-------------FTILKQVQ-LP--SVPVFISVSGQYDE 238 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchh-------------heeEEEEe-cC--CCceEEEEEeeeec
Confidence 3556777765421 24899999999999998542 22222221 11 1113333332223
Q ss_pred CceEEEEecCCCeEEEE
Q 003423 651 NQTEIRSTGGDGCICYL 667 (821)
Q Consensus 651 ~~~~l~t~g~Dg~i~iw 667 (821)
-.-.|+.++|||+|.+-
T Consensus 239 vdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 239 VDYRIVVACRDGKIYTI 255 (257)
T ss_pred cceEEEEEeCCCEEEEE
Confidence 45678888899987653
No 482
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=37.88 E-value=4.8e+02 Score=27.00 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=64.1
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCe------EEEEecccCcccCCCCceeeeceEEeccce--------eEEEEEEc--C
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRS------ARIWEVRAEYWKDSDSIEEVGSSVLYGHNA--------RVWDCCLT--D 318 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~--------~i~~v~~~--~ 318 (821)
.-+.+.+|.+.+++..+++.+++|. +...++..... ....+.......+..-.+ ..-++++. +
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 3467788999977778888889888 65555554110 000011111111111111 22356663 4
Q ss_pred CEEEEEeCC------CeEEEEcCCCceeeEeec--------------ccCCCeEEEEEecCCCEEEEEeC
Q 003423 319 SFIITAGED------CTCRVWGSDGKQLKMIKE--------------HIGRGIWRCLYDSLSSLLVTAGF 368 (821)
Q Consensus 319 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~--------------h~~~~i~~l~~~~~~~~l~tg~~ 368 (821)
.++++.-.+ ..|..++.+|+....+.. ...+++.+|+++|+|+.|+++-+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 555655555 678788877766544411 12246889999999997766654
No 483
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=37.22 E-value=5.3e+02 Score=27.30 Aligned_cols=199 Identities=16% Similarity=0.140 Sum_probs=106.9
Q ss_pred eEEEEEcCCeEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEee-cCCCCCE--EEEEEC-C---CcEEE
Q 003423 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK-VCNGNRS--LAIGCS-D---NSIRV 161 (821)
Q Consensus 89 ~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~-~~~~~~~--l~t~~~-d---~~i~i 161 (821)
.++.+-..+-+.+||++- +.+..+.. +.+.-+..-. ..-+++. ||+++. + ++|++
T Consensus 70 lIigTdK~~GL~VYdL~G----------------k~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~ 131 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDG----------------KELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRL 131 (381)
T ss_dssp EEEEEETTTEEEEEETTS-----------------EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEE
T ss_pred eEEEEeCCCCEEEEcCCC----------------cEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEE
Confidence 566666788999999873 34444431 2333333321 0002332 445543 2 57999
Q ss_pred EEccCC-ceeEEEccCc------ceeEEEEeeccCCcc-CeEEEEEeeCCEEEEEEcccCCcccCCCCCCCcccCCCCCC
Q 003423 162 WDISNS-SIILEVHSPE------RCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (821)
Q Consensus 162 wd~~~~-~~~~~~~~~~------~~~~~s~~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 233 (821)
|.+... ..+..+..+. -..+|.+++.....+ ..+++....+|.+..|.+....
T Consensus 132 f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~------------------- 192 (381)
T PF02333_consen 132 FRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDG------------------- 192 (381)
T ss_dssp EEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-T-------------------
T ss_pred EEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCC-------------------
Confidence 988632 2344443211 123677777654334 3577778889999999886110
Q ss_pred cceeeecccccceeeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEe--ccceeE
Q 003423 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY--GHNARV 311 (821)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~i 311 (821)
++......+++|.. ...+-++.......+|..+-.|.-|.-|+...... .....+ .... +....|
T Consensus 193 -------~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~---~~~~~v--~~~~g~~l~aDv 259 (381)
T PF02333_consen 193 -------DGKVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGG---NDRTLV--ASADGDGLVADV 259 (381)
T ss_dssp -------TSSEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC----S--EEE--EEBSSSSB-S-E
T ss_pred -------CCcEeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCC---Ccceee--ecccccccccCc
Confidence 01114466777764 44788999988888999999887777776654322 001111 1111 234566
Q ss_pred EEEEEc-----CCEE-EEEeCCCeEEEEcCCC
Q 003423 312 WDCCLT-----DSFI-ITAGEDCTCRVWGSDG 337 (821)
Q Consensus 312 ~~v~~~-----~~~l-~s~~~dg~i~iwd~~~ 337 (821)
-.++.- ..+| +|.-.+++..+|+.++
T Consensus 260 EGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 260 EGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred cceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 666653 1344 4555677899999754
No 484
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=36.89 E-value=2.5e+02 Score=27.71 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=50.2
Q ss_pred CCCcEEEEEEeecC----CCCCEEEEEECCCcEEEEEccCCceeEEEccCccee--EEEEeeccCCccCeEEEEEeeCCE
Q 003423 131 LSHWVFDVCFLKVC----NGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL--LYSMKLWGDNLEALRIASGTIYNE 204 (821)
Q Consensus 131 h~~~I~~~~~~~~~----~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~s~~~~~~s~~~~~l~sg~~dg~ 204 (821)
+...|+|++--..+ ..-..|+.|..+|.|.|.|.+.-..+.++.-+.-.. ..+-.| ..-+-+|+.+++||.
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~---devdyRI~Va~Rdg~ 251 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQY---DEVDYRIVVACRDGK 251 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeee---eccceEEEEEeCCCE
Confidence 34678998875421 122579999999999999998888777766543322 222222 113567888999999
Q ss_pred EEEE
Q 003423 205 IIVW 208 (821)
Q Consensus 205 i~vw 208 (821)
|++-
T Consensus 252 iy~i 255 (257)
T PF14779_consen 252 IYTI 255 (257)
T ss_pred EEEE
Confidence 8864
No 485
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=36.84 E-value=2.3e+02 Score=29.65 Aligned_cols=112 Identities=18% Similarity=0.256 Sum_probs=67.6
Q ss_pred CCeEEEEECCCCeeeeEEEeec-cccEEeEEeccccCCCCCCccceeeEEEEEcCCeEEEEEEeecCCCCCCCCCccccc
Q 003423 43 GSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121 (821)
Q Consensus 43 ~~~i~iwd~~t~~~~~~~~~~~-~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~~v~i~~~~~~~~~~~~~~~~~~~~ 121 (821)
+..+.+|...+++..+++.... +.-+-.+.|.-+ +.... ...-.+-+++..+++....+. +..+....
T Consensus 228 g~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~--p~~~~----~fvg~Al~s~i~~~~k~~~~t-----ws~~~vis 296 (476)
T KOG0918|consen 228 GSHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHN--PSKAT----GFVGCALSSNIFRFFKNSDDT-----WSAEVVIS 296 (476)
T ss_pred eeeeEEEecCCccceeEEecCCCCcceEEeeeccC--CCccc----ceeeeeccCCceeeeeccccc-----cceeEEEe
Confidence 5689999999999999998755 444555665422 11111 133344467777777655422 11111000
Q ss_pred --cc--eeeeccCCCCcEEEEEEeecCCCCCEEEEE-ECCCcEEEEEccCCc
Q 003423 122 --LS--LVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSS 168 (821)
Q Consensus 122 --~~--~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~-~~d~~i~iwd~~~~~ 168 (821)
.. .-..+++-.+-|+++-+|- |.++|..+ -.+|.||-||+.+..
T Consensus 297 vp~~kv~~w~~~eMP~LITDilISm---DDRFLYvs~WLHGDirQYdIsDP~ 345 (476)
T KOG0918|consen 297 VPPLKVENWILPEMPGLITDILISL---DDRFLYVSNWLHGDIRQYDISDPK 345 (476)
T ss_pred cCccccccccCcccchhhheeEEee---cCcEEEEEeeeecceeeeccCCCC
Confidence 00 0123344457799999998 88887654 569999999987654
No 486
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=36.05 E-value=8e+02 Score=29.05 Aligned_cols=72 Identities=14% Similarity=-0.088 Sum_probs=45.3
Q ss_pred CCeEEEEECCCCcEEEeeecCCCCcccc----cCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEE
Q 003423 534 GHRFIFTADPKGRLKLWQLCDPFSSVCY----ESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLV 605 (821)
Q Consensus 534 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~ 605 (821)
-+.+++.+-.||+|.++|..+.+..... .......-..-..|.-++...+..++|||++.-++.-+.+|.+.
T Consensus 270 ~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 270 LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 4568889999999999998776432221 00000000111122222333566799999999999999999976
No 487
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=35.59 E-value=5.9e+02 Score=27.39 Aligned_cols=44 Identities=14% Similarity=-0.040 Sum_probs=34.8
Q ss_pred eeEEEEecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcc
Q 003423 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (821)
Q Consensus 247 ~~~~~~~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 290 (821)
.....+......+.+|+.+|++++.|+...=|.|.++|+..+..
T Consensus 298 ~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v 341 (415)
T PF14655_consen 298 PMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV 341 (415)
T ss_pred ceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence 34555666777899999999988777766669999999988754
No 488
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=35.12 E-value=6.3e+02 Score=27.57 Aligned_cols=54 Identities=9% Similarity=0.099 Sum_probs=33.6
Q ss_pred CcEEEEEEeecCCCCCEEEEEECCCcEEEEEccCCce--eEEEc----cCcceeEEEEeeccC
Q 003423 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--ILEVH----SPERCLLYSMKLWGD 189 (821)
Q Consensus 133 ~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~--~~~~~----~~~~~~~~s~~~~~~ 189 (821)
+.-+.|+|.| ++++|++--..|.|++++-.++.. +..+. .....-+..+++++.
T Consensus 30 ~~Pw~maflP---DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 30 NKPWALLWGP---DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCceEEEEcC---CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 4568899999 998777654469999998655432 21111 112344667777654
No 489
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=34.88 E-value=4.9e+02 Score=26.22 Aligned_cols=112 Identities=7% Similarity=-0.006 Sum_probs=75.0
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEcCCEEEEEeCCCeEEEEc
Q 003423 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWG 334 (821)
Q Consensus 255 h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~l~s~~~dg~i~iwd 334 (821)
-.+.+..+.++. ++...+..+.-++|.|+.+... ...+ ....-.+--+++..++++.+.+..|.-+.+.|
T Consensus 85 ~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~s-----P~~~---~~lnt~gyaygv~vsGn~aYVadlddgfLivd 154 (370)
T COG5276 85 ARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDS-----PTLI---GFLNTDGYAYGVYVSGNYAYVADLDDGFLIVD 154 (370)
T ss_pred hhhhhheeEecc--cEEEEEcCCCceEEEeccCCCC-----ccee---ccccCCceEEEEEecCCEEEEeeccCcEEEEE
Confidence 345667788864 4666666777899999998765 3222 11222244567777899999998777777888
Q ss_pred CC----CceeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 003423 335 SD----GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (821)
Q Consensus 335 ~~----~~~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~ 379 (821)
+. ......+....+ .-+.++++ |++-..+..|+-+++.|+..
T Consensus 155 vsdpssP~lagrya~~~~-d~~~v~IS--Gn~AYvA~~d~GL~ivDVSn 200 (370)
T COG5276 155 VSDPSSPQLAGRYALPGG-DTHDVAIS--GNYAYVAWRDGGLTIVDVSN 200 (370)
T ss_pred CCCCCCceeeeeeccCCC-CceeEEEe--cCeEEEEEeCCCeEEEEccC
Confidence 82 233334444444 24667776 67788888999999999965
No 490
>PRK10115 protease 2; Provisional
Probab=34.19 E-value=8.2e+02 Score=28.59 Aligned_cols=50 Identities=8% Similarity=0.159 Sum_probs=31.8
Q ss_pred eeeEEEEEeccCCCCCCcceEEeecC------CeEEEEECCCCeeeeEEEeeccccEEeEEeccc
Q 003423 18 GEISALCFVHLPSHLSSLPFLLAGSG------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFI 76 (821)
Q Consensus 18 ~~Vt~l~~~~~p~~~~~~~~l~~g~~------~~i~iwd~~t~~~~~~~~~~~~~~i~~i~~~~~ 76 (821)
-.+..+.++ || +++|+-+.| -.|++.|+.+|+.+... ....+ ..+.|.++
T Consensus 127 ~~l~~~~~S--pd----g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~--i~~~~-~~~~w~~D 182 (686)
T PRK10115 127 YTLGGMAIT--PD----NTIMALAEDFLSRRQYGIRFRNLETGNWYPEL--LDNVE-PSFVWAND 182 (686)
T ss_pred EEEeEEEEC--CC----CCEEEEEecCCCcEEEEEEEEECCCCCCCCcc--ccCcc-eEEEEeeC
Confidence 446777888 98 667776553 47999999998744221 12222 34777754
No 491
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=34.18 E-value=5.2e+02 Score=26.37 Aligned_cols=155 Identities=16% Similarity=0.204 Sum_probs=76.9
Q ss_pred ecCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc-CCEEEEEeCCCeEE
Q 003423 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCR 331 (821)
Q Consensus 253 ~~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~l~s~~~dg~i~ 331 (821)
..-.+.+..+.-+++|++++.++.-....-||...... + ..-..-..+|..+.|. +..|......|.++
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w------~----~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~ 210 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW------Q----PHNRNSSRRIQSMGFSPDGNLWMLARGGQIQ 210 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-------E----EEE--SSS-EEEEEE-TTS-EEEEETTTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccc------e----EEccCccceehhceecCCCCEEEEeCCcEEE
Confidence 34558899999999999998887756666787654322 1 1333356789999998 35555566888888
Q ss_pred EEcC--CCceeeE--eec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCcccCCccccccCCCcceEEeecC
Q 003423 332 VWGS--DGKQLKM--IKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIP 406 (821)
Q Consensus 332 iwd~--~~~~~~~--~~~-h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (821)
.=+. +...-.. ... ..+..+..+++.+++...++|+ .|.+.. ..++.. -+...
T Consensus 211 ~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~-S~DgGk------------------tW~~~-- 268 (302)
T PF14870_consen 211 FSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLV-STDGGK------------------TWQKD-- 268 (302)
T ss_dssp EEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEE-ESSTTS------------------S-EE---
T ss_pred EccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEE-eCCCCc------------------cceEC--
Confidence 8772 2211111 111 1222488999998877666655 454433 222110 00000
Q ss_pred CcccceeccCCCCcceEEEEeecCCeEEEEecCCcEEEE
Q 003423 407 NFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (821)
Q Consensus 407 ~~~~~~~~~~~~~~~i~~l~f~~~~~~l~~~~~g~~~~~ 445 (821)
.....-..-+..+.|.++++-++...+|.+..+
T Consensus 269 ------~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 269 ------RVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp ------GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred ------ccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 000011223677888888888899988887654
No 492
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=32.51 E-value=1.1e+02 Score=18.00 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=17.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEE
Q 003423 259 IFRIEWSSCGSKLVSVSDDRSARIW 283 (821)
Q Consensus 259 I~~l~~s~~~~~l~s~s~Dg~i~iw 283 (821)
..+|+.+++|+.+++=+....|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4577788888777777666666653
No 493
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=32.43 E-value=3.3e+02 Score=26.76 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=23.1
Q ss_pred CCCCeEEEeeecccEEEEECccccEEEEEe-eCCCCc
Q 003423 702 LASCNYAAGFASTDFIIWNLITEAKVVQIP-CGGWRR 737 (821)
Q Consensus 702 ~~~~~l~~g~~~~~~~vW~~~~~~~l~~i~-cgg~~r 737 (821)
++++.++.+.+++ ++||..+++.+..+| --|+.|
T Consensus 179 PdG~lFi~an~~s--~i~d~~~n~v~~~lP~lPg~~R 213 (243)
T PF07250_consen 179 PDGNLFIFANRGS--IIYDYKTNTVVRTLPDLPGGPR 213 (243)
T ss_pred CCCCEEEEEcCCc--EEEeCCCCeEEeeCCCCCCCce
Confidence 5677776666554 888999998877764 223444
No 494
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=30.63 E-value=6.6e+02 Score=26.46 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=47.1
Q ss_pred CeEEEeeecccEEEEECccccEEEEEeeCCCCccceeecCCCCCcceeEEEEeeceEEEEccccCceeeEEee
Q 003423 705 CNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKANQLWRLRDLCSLIWWILHQ 777 (821)
Q Consensus 705 ~~l~~g~~~~~~~vW~~~~~~~l~~i~cgg~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 777 (821)
..+++|..++.++..|+.+.+++++.++++ . ..+.-.+...+...+...-++.++..++..-...|..+-
T Consensus 112 G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~--~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 112 GKIYVGSWDGKLYALDASTGTLVWSRNVGG-S--PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYET 181 (370)
T ss_pred CeEEEecccceEEEEECCCCcEEEEEecCC-C--eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEec
Confidence 348888888899999999999999999999 2 222211223344444444457777777665566676443
No 495
>PLN02193 nitrile-specifier protein
Probab=29.95 E-value=7.8e+02 Score=27.08 Aligned_cols=22 Identities=5% Similarity=0.081 Sum_probs=13.8
Q ss_pred CCeEEEEECCCC----cEEEeeecCC
Q 003423 534 GHRFIFTADPKG----RLKLWQLCDP 555 (821)
Q Consensus 534 ~~~~l~~~~~dg----~i~iwd~~~~ 555 (821)
++++++.++.++ .+.+||+...
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCC
Confidence 456666666553 4777877654
No 496
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=29.74 E-value=5.4e+02 Score=25.17 Aligned_cols=163 Identities=17% Similarity=0.166 Sum_probs=81.1
Q ss_pred CCCeEEEEECCCCcEEEeeecCCCCcccccCCccceeeeeEEEecccCceEEEEEeecCCCEEEEEcCCCcEEEEecCcc
Q 003423 533 LGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (821)
Q Consensus 533 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~~L~sgs~dG~i~iw~~~~~ 612 (821)
|+...+++....+-+++||+...... ..+.-+.+.+.+...| +--...|.-++.| | -....|.+|.++..
T Consensus 65 P~kS~vItt~Kk~Gl~VYDLsGkqLq-s~~~Gk~NNVDLrygF-~LgG~~idiaaAS-d-------R~~~~i~~y~Idp~ 134 (364)
T COG4247 65 PDKSLVITTVKKAGLRVYDLSGKQLQ-SVNPGKYNNVDLRYGF-QLGGQSIDIAAAS-D-------RQNDKIVFYKIDPN 134 (364)
T ss_pred cCcceEEEeeccCCeEEEecCCCeee-ecCCCcccccccccCc-ccCCeEEEEEecc-c-------ccCCeEEEEEeCCC
Confidence 44577888888888999999865321 1111233333443333 2122233222222 1 12457888888743
Q ss_pred cccccccccccccCccccc--ccccCCcceEEEEEEecCC-CceEEEEecCCCeEEEEEee-cCCceeeeeeeeeeeeee
Q 003423 613 LLNDKSVALHVEVSPLNYF--KGAHGISTVSTLSVAKLRS-NQTEIRSTGGDGCICYLEYD-KDRESLEFIGMKQVKELS 688 (821)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~--~~~h~~~~Vt~i~~~~~~~-~~~~l~t~g~Dg~i~iw~~~-~~~~~~~~~~~~~~~~~~ 688 (821)
. ..+..+..- .-..+...+-.++.+.... +.-+.+..+++|.++.|++- ....+ ++-+.++.+.
T Consensus 135 ~---------~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGk---v~~k~vR~fk 202 (364)
T COG4247 135 P---------QYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGK---VGTKLVRQFK 202 (364)
T ss_pred c---------cceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCce---EcceeeEeee
Confidence 1 111111100 0012234455666665432 44678888999999999994 33222 3334444444
Q ss_pred eeeeeccCCCccCCCCCeEEEeeecccEEEEEC
Q 003423 689 LIQSVSAENNSIDLASCNYAAGFASTDFIIWNL 721 (821)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~~vW~~ 721 (821)
... ..++...+.....|..+=. +.-+|..
T Consensus 203 ~~t--QTEG~VaDdEtG~LYIaeE--dvaiWK~ 231 (364)
T COG4247 203 IPT--QTEGMVADDETGFLYIAEE--DVAIWKY 231 (364)
T ss_pred cCC--cccceeeccccceEEEeec--cceeeec
Confidence 322 1233444443444444443 3467764
No 497
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=28.00 E-value=5.7e+02 Score=30.06 Aligned_cols=210 Identities=14% Similarity=0.145 Sum_probs=0.0
Q ss_pred eeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeecccccceeeEEEEecCCCcEEEEE--------EcCCCCEE
Q 003423 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIE--------WSSCGSKL 271 (821)
Q Consensus 200 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~--------~s~~~~~l 271 (821)
+.|+.+.+|+.. .....+.+..-+..|..++ |.+.=+.|
T Consensus 99 T~dnkLiLWnyn---------------------------------n~neyq~idd~shtIlkVkLvrPkantFvs~i~hl 145 (1263)
T COG5308 99 TNDNKLILWNYN---------------------------------NSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHL 145 (1263)
T ss_pred EcCCEEEEEecC---------------------------------CCcchhhhhhhhhheeEEEEeccCCcccHHhhhhh
Q ss_pred EEEeCCCeEEEEecccCcccCCCCceeeeceEEeccceeEEEEEEc--CCEEEEEeCCCeEEEEcC--CCc---------
Q 003423 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS--DGK--------- 338 (821)
Q Consensus 272 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~~l~s~~~dg~i~iwd~--~~~--------- 338 (821)
+-......+.++-+.-.+......+-..+. ......-.|.|+.-. ++.+++|-.| ..+|.+ .+.
T Consensus 146 L~vAT~~e~~ilgvs~d~~T~Els~fnTgl-~vsvqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcs 222 (1263)
T COG5308 146 LFVATEKEVMILGVSKDTKTGELSLFNTGL-VVSVQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCS 222 (1263)
T ss_pred hhhhhhheeeEEEEEeccccceeEEEecce-EEeccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhh
Q ss_pred -------------eeeEeecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEcCCcCCCc--------ccCCccccccCCC
Q 003423 339 -------------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGS--------LESHPEAKEFNGR 397 (821)
Q Consensus 339 -------------~~~~~~~h~~~~i~~l~~~~~~~~l~tg~~dg~I~iwd~~~~~~~~--------~~~~~~~~~~~~~ 397 (821)
+..-..+-.+..|..++++.....|.+-.....|+-|.+...-+.. +......... .
T Consensus 223 kiclTkS~l~sllPs~~~~~ipgetI~Ql~vDqsRg~ly~Lr~kS~Vray~itkngl~gpv~i~~a~i~r~a~~lna--~ 300 (1263)
T COG5308 223 KICLTKSILSSLLPSFFSFGIPGETIKQLAVDQSRGLLYVLRKKSAVRAYSITKNGLVGPVFISFASIDRNAAILNA--T 300 (1263)
T ss_pred ccCCcHHHHHhhcccccccCCcccchhheeecccccceeeecccceeeeEeeecccccccccccHHHHHhHHhhhcc--C
Q ss_pred cceEEeecCCcccceeccCCCCcceEEEEeecCC-eEEEEecCCcEEEEEe
Q 003423 398 TEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKL 447 (821)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f~~~~-~~l~~~~~g~~~~~~i 447 (821)
..++..+.-............+..+-+++....| +++.-++-|++..+.+
T Consensus 301 sPlL~pr~~kIvkIvsi~~~Enn~lflvaiT~tgcRlYf~Gs~gr~si~al 351 (1263)
T COG5308 301 SPLLEPRMYKIVKIVSIPAYENNQLFLVAITSTGCRLYFDGSRGRVSIVAL 351 (1263)
T ss_pred CcccCCceEEEEEEeecccccccceEEEEEeccceEEEEecCccceeeecc
No 498
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=26.99 E-value=1e+03 Score=27.40 Aligned_cols=261 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred eeEEEEEeccCCCCCCcceEEeecCCeEEEEECC-CCeeeeEEEeeccccEEeEEeccccCCCCCCccceeeEEEEEcCC
Q 003423 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLE-AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (821)
Q Consensus 19 ~Vt~l~~~~~p~~~~~~~~l~~g~~~~i~iwd~~-t~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~l~~~g~~ 97 (821)
.+.+..++ |+ +...-++-++..|--|=++ |.+++..+.......|.+|...... .+.+ -+.+.....+
T Consensus 29 ~~vs~~~s--~~---sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~----~~~~--~~~~glt~rK 97 (670)
T PF10395_consen 29 LQVSDDFS--PD---SNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKS----DGKK--LYCVGLTERK 97 (670)
T ss_pred eeeecccC--CC---CceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecC----CCcE--EEEEEEeeCC
Q ss_pred eEEEEEEeecCCCCCCCCCccccccceeeeccCCCCcEEEEEEeecCCCCCEEEEEECCCcEEEEEc--cCCceeEEEcc
Q 003423 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI--SNSSIILEVHS 175 (821)
Q Consensus 98 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~~~~l~t~~~d~~i~iwd~--~~~~~~~~~~~ 175 (821)
.-++..+..+.........+....-+....+. +.|-++.|.+ +++.+++...+|.|.+||. ...+.+..+..
T Consensus 98 k~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl~---~kvv~Ik~~~---~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~ 171 (670)
T PF10395_consen 98 KFKLLLIERKVGSTEDGTVNSETTNEFELKLD---DKVVGIKFSS---DGKIIYVVLENGSIQIYDFSENSLEKVPQLKL 171 (670)
T ss_pred eeEEEEEEccCccccccccCccccceEEEEcc---cceEEEEEec---CCCEEEEEEcCCcEEEEecccccccccccccc
Q ss_pred Ccce-eEEEEeeccCCc-----cCeEEEEE--eeCCEEEEEEcccCCcccCCCCCCCcccCCCCCCcceeeeccccccee
Q 003423 176 PERC-LLYSMKLWGDNL-----EALRIASG--TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (821)
Q Consensus 176 ~~~~-~~~s~~~~~~s~-----~~~~l~sg--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (821)
.... ++|+ .|...-. +-.++++. +..-..+++.+. ....
T Consensus 172 ~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~--------------------------------~~~~ 218 (670)
T PF10395_consen 172 KSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLSYKLISLS--------------------------------NESS 218 (670)
T ss_pred ccccceehh-hhhcccccccCCceEEEEEEcCCCcEEEEEEEec--------------------------------cCCc
Q ss_pred eEEEEe---cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecccCcccCCCCceeeeceEEeccc-eeEEEEEEcCCEEEE
Q 003423 248 NLFRLV---GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN-ARVWDCCLTDSFIIT 323 (821)
Q Consensus 248 ~~~~~~---~h~~~I~~l~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~v~~~~~~l~s 323 (821)
.+..+. -+........|.-....|.-- .+++|.+|++...+. .+.+....+.... ..+.++.--..-=+-
T Consensus 219 ~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~-----~~tI~l~~ii~~~~~~~vSl~~~s~nRvL 292 (670)
T PF10395_consen 219 SIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQI-----QKTISLPSIIDKESDDLVSLKPPSPNRVL 292 (670)
T ss_pred ceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceE-----EEEEEechhhccccccceEeecCCCCeEE
Q ss_pred EeCCCeEEEEcC
Q 003423 324 AGEDCTCRVWGS 335 (821)
Q Consensus 324 ~~~dg~i~iwd~ 335 (821)
-+.++.|.+.|+
T Consensus 293 Ls~~nkIyLld~ 304 (670)
T PF10395_consen 293 LSVNNKIYLLDL 304 (670)
T ss_pred EEcCCEEEEEee
No 499
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=26.51 E-value=7.4e+02 Score=25.71 Aligned_cols=189 Identities=11% Similarity=0.039 Sum_probs=0.0
Q ss_pred CCeEEEEecCCc---------EEEEEecCCCcceeeEeeeccCCcceEEEec-cCCCCCCCCCCCcEEEEecCC------
Q 003423 430 EDTLYIATNHGY---------LYHTKLCDMDSVNWNKILQVSEGMPIICMDL-LSNEPKYPCGIDDWVALGDGK------ 493 (821)
Q Consensus 430 ~~~~l~~~~~g~---------~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~s~~~~~~l~~g~~~------ 493 (821)
++.+++...... +..+..++.....|..+.........-.... ..+. ++.++|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g--------~IYviGG~~~~~~~~ 134 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNG--------QAYFTGGVNKNIFDG 134 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCC--------EEEEEcCcChHHHHH
Q ss_pred ---------------------------------ccEEEEEecCCCCCCcceeEEeeccCccceeeeeEEeecCCCeEEEE
Q 003423 494 ---------------------------------GNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFT 540 (821)
Q Consensus 494 ---------------------------------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 540 (821)
..+..||..+. .-...+..+.....-..+...++++.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~--------~W~~~~~~p~~~r~~~~~~~~~~~iyv~ 206 (346)
T TIGR03547 135 YFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN--------QWRNLGENPFLGTAGSAIVHKGNKLLLI 206 (346)
T ss_pred HHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCC--------ceeECccCCCCcCCCceEEEECCEEEEE
Q ss_pred ECCC------CcEEEeeecCCCCcccccCCccceeeeeEEEecc----cCceEEEEEeecCCCEEEEEcCCC--------
Q 003423 541 ADPK------GRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSC----FGARIMCLDASFEDEVLFCGDLRG-------- 602 (821)
Q Consensus 541 ~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~I~~l~~s~~~~~L~sgs~dG-------- 602 (821)
|+.+ ..+..|++... ...+.....+... |.....+.+...++++.+.|+.+.
T Consensus 207 GG~~~~~~~~~~~~~y~~~~~----------~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~ 276 (346)
T TIGR03547 207 NGEIKPGLRTAEVKQYLFTGG----------KLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYK 276 (346)
T ss_pred eeeeCCCccchheEEEEecCC----------CceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhh
Q ss_pred --------------cEEEEecCcccccccccccccccCcccccccccCCcceEEEEEEecCCCceEEEEecCCC
Q 003423 603 --------------NLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDG 662 (821)
Q Consensus 603 --------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~Vt~i~~~~~~~~~~~l~t~g~Dg 662 (821)
++.+||.+.+ .+..+..+ ...+..-.++..- +..++.+|.+.
T Consensus 277 ~~~~~~~~~~~~~~~~e~yd~~~~-----------~W~~~~~l--p~~~~~~~~~~~~-----~~iyv~GG~~~ 332 (346)
T TIGR03547 277 NGKLYAHEGLIKAWSSEVYALDNG-----------KWSKVGKL--PQGLAYGVSVSWN-----NGVLLIGGENS 332 (346)
T ss_pred cCCccccCCCCceeEeeEEEecCC-----------cccccCCC--CCCceeeEEEEcC-----CEEEEEeccCC
No 500
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=25.00 E-value=1.6e+02 Score=21.46 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=18.8
Q ss_pred ceEEEEecCCCeEEEEEeecCCcee
Q 003423 652 QTEIRSTGGDGCICYLEYDKDRESL 676 (821)
Q Consensus 652 ~~~l~t~g~Dg~i~iw~~~~~~~~~ 676 (821)
...+.--+.||.|+||.++.+....
T Consensus 29 ~N~Fav~~e~~~iKIfkyd~~tNei 53 (63)
T PF14157_consen 29 HNHFAVVDEDGQIKIFKYDEDTNEI 53 (63)
T ss_dssp TTEEEEE-ETTEEEEEEEETTTTEE
T ss_pred CCEEEEEecCCeEEEEEeCCCCCeE
Confidence 3556667999999999998876653
Done!